A predictive index of biotic integrity model for aquatic-vertebrate assemblages of Western U.S. streams

EPA Science Inventory

Because of natural environmental and faunal differences and scientific perspectives, numerous indices of biological integrity (IBIs) have been developed at local state, and regional scales in the USA. These multiple IBIs, plus different criteria for judging impairment, hinder ri...

Introducing the MIT Regional Climate Model (MRCM)

NASA Astrophysics Data System (ADS)

Eltahir, Elfatih A. B.; Winter, Jonathn M.; Marcella, Marc P.; Gianotti, Rebecca L.; Im, Eun-Soon

2013-04-01

During the last decade researchers at MIT have worked on improving the skill of Regional Climate Model version 3 (RegCM3) in simulating climate over different regions through the incorporation of new physical schemes or modification of original schemes. The MIT Regional Climate Model (MRCM) features several modifications over RegCM3 including coupling of Integrated Biosphere Simulator (IBIS), a new surface albedo assignment method, a new convective cloud and rainfall auto-conversion scheme, and a modified boundary layer height and cloud scheme. Here, we introduce the MRCM and briefly describe the major model modifications relative to RegCM3 and their impact on the model performance. The most significant difference relative to the RegCM3 original configuration is coupling the Integrated Biosphere Simulator (IBIS) land-surface scheme (Winter et al., 2009). Based on the simulations using IBIS over the North America, the Maritime Continent, Southwest Asia and West Africa, we demonstrate that the use of IBIS as the land surface scheme results in better representation of surface energy and water budgets in comparison to BATS. Furthermore, the addition of a new irrigation scheme to IBIS makes it possible to investigate the effects of irrigation over any region. Also a new surface albedo assignment method used together with IBIS brings further improvement in simulations of surface radiation (Marcella and Eltahir, 2013). Another important feature of the MRCM is the introduction of a new convective cloud and rainfall auto-conversion scheme (Gianotti and Eltahir, 2013). This modification brings more physical realism into an important component of the model, and succeeds in simulating convective-radiative feedback improving model performance across several radiation fields and rainfall characteristics. Other features of MRCM such as the modified boundary layer height and cloud scheme, and the improvements in the dust emission and transport representations will be discussed.

A preliminary index of biotic integrity for monitoring the condition of the Rio Paraiba do Sul, southeast Brazil.

PubMed

Araujo, Francisco Gerson; Fichberg, Ilana; Pinto, Benjamin Carvalho Teixeira; Peixoto, Magna Galvao

2003-10-01

The biodiversity of many Brazilian rivers is seriously threatened by industrial and municipal pollution, and Rio Paraiba do Sul, located between two major industrial centers is one example of this situation. A survey of the fish assemblage was conducted from October 1998 to September 1999 and the data were used to develop an index of biotic integrity (IBI). We sampled three zones in bracketing a large urban-industrial complex to evaluate water quality changes and the usefulness of the IBI as a monitoring tool. Water quality was classified as poor upstream of the effluent discharges, very poor near the discharges, and poor-fair downstream of the discharges, with this latter situation revealing the current biological capacity of the river. Physical and chemical habitat characteristics were also measured at each site to construct an independent environmental index to validate the IBI. The habitat and IBI indices were highly correlated, suggesting this IBI would be applicable to other large rivers in southeast Brazil.

A STRUCTURED APPROACH FOR DEVELOPING INDICES OF BIOTIC INTEGRITY: THREE EXAMPLES FROM STREAMS AND RIVERS IN THE WESTERN USA

EPA Science Inventory

In the late 1990s the Environmental Monitoring and Assessment Program of the U.S. Environmental Protection Agency developed a structured set of tests to evaluate and facilitate selection of metrics for indices of biotic integrity (IBIs). These IBIs were designed to be applicable ...

Implementation of a Marauding Insect Module (MIM, version 1.0) in the Integrated BIosphere Simulator (IBIS, version 2.6b4) Dynamic Vegetation-Land Surface Model

NASA Astrophysics Data System (ADS)

Landry, J.-S.; Price, D. T.; Ramankutty, N.; Parrott, L.; Matthews, H. D.

2015-12-01

Insects defoliate and kill plants in many ecosystems worldwide. The consequences of these natural processes on terrestrial ecology and nutrient cycling are well established, and their potential climatic effects resulting from modified land-atmosphere exchanges of carbon, energy, and water are increasingly being recognized. We developed a Marauding Insect Module (MIM) to quantify, in the Integrated BIosphere Simulator (IBIS), the consequences of insect activity on biogeochemical and biogeophysical fluxes, also accounting for the effects of altered vegetation dynamics. MIM can simulate damage from broadleaf defoliators, needleleaf defoliators, and bark beetles, with the resulting impacts being estimated by IBIS based on the new, insect-modified state of the vegetation. MIM further accounts for the physical presence and gradual fall of insect-killed dead standing trees. The design of MIM should facilitate the addition of other insect types besides the ones already included and could guide the development of similar modules for other process-based vegetation models. After describing IBIS-MIM, we illustrate the usefulness of the model by presenting results spanning daily to centennial timescales for vegetation dynamics and cycling of carbon, energy, and water following a simulated outbreak of the mountain pine beetle. We then show that these simulated impacts agree with many previous studies based on field measurements, satellite data, or modelling. MIM and similar tools should therefore be of great value in assessing the wide array of impacts resulting from insect-induced plant damage in the Earth system.

Using two classification schemes to develop vegetation indices of biological integrity for wetlands in West Virginia, USA.

PubMed

Veselka, Walter; Rentch, James S; Grafton, William N; Kordek, Walter S; Anderson, James T

2010-11-01

Bioassessment methods for wetlands, and other bodies of water, have been developed worldwide to measure and quantify changes in "biological integrity." These assessments are based on a classification system, meant to ensure appropriate comparisons between wetland types. Using a local site-specific disturbance gradient, we built vegetation indices of biological integrity (Veg-IBIs) based on two commonly used wetland classification systems in the USA: One based on vegetative structure and the other based on a wetland's position in a landscape and sources of water. The resulting class-specific Veg-IBIs were comprised of 1-5 metrics that varied in their sensitivity to the disturbance gradient (R2=0.14-0.65). Moreover, the sensitivity to the disturbance gradient increased as metrics from each of the two classification schemes were combined (added). Using this information to monitor natural and created wetlands will help natural resource managers track changes in biological integrity of wetlands in response to anthropogenic disturbance and allows the use of vegetative communities to set ecological performance standards for mitigation banks.

Determining a regional framework for assessing biotic integrity of virginia streams

USGS Publications Warehouse

Smogor, Roy A.; Angermeier, P.L.

2001-01-01

The utility of an index of biotic integrity (IBI) depends on its ability to distinguish anthropogenic effects on biota amid natural biological variability. To enhance this ability, we examined fish assemblage data from least-disturbed stream sites in Virginia to determine the best way to regionally stratify natural variation in candidate IBI metrics and their scoring criteria. Specifically, we examined metric variation among physiographic regions, U.S. Environmental Protection Agency ecoregions, and drainage basins to judge their utility as regions in which to develop and use distinct versions of the IBI for Virginia warmwater streams. Statewide, metrics differed most among physiographic regions; thus, we recommend their use as IBI regions. Largest differences were found for taxonomic metrics between coastal plain and mountain sites, particularly in numbers of native minnow (Cyprinidae), sunfish (Centrarchidae), and darter (Percidae) species. Trophic and reproductive metrics also differed between coastal plain and more-upland streams, presumably reflecting differences in functional adaptations of fishes to upland versus lowland stream habitats. We suggest three preliminary regional IBis for Virginia, each having a distinctive set of taxonomic, trophic, and reproductive metrics and corresponding scoring criteria.

Influences of upland and riparian land use patterns on stream biotic integrity

USGS Publications Warehouse

Snyder, C.D.; Young, J.A.; Villella, R.; Lemarie, D.P.

2003-01-01

We explored land use, fish assemblage structure, and stream habitat associations in 20 catchments in Opequon Creek watershed, West Virginia. The purpose was to determine the relative importance of urban and agriculture land use on stream biotic integrity, and to evaluate the spatial scale (i.e., whole-catchment vs riparian buffer) at which land use effects were most pronounced. We found that index of biological integrity (IBI) scores were strongly associated with extent of urban land use in individual catchments. Sites that received ratings of poor or very poor based on IBI scores had > 7% of urban land use in their respective catchments. Habitat correlations suggested that urban land use disrupted flow regime, reduced water quality, and altered stream channels. In contrast, we found no meaningful relationship between agricultural land use and IBI at either whole-catchment or riparian scales despite strong correlations between percent agriculture and several important stream habitat measures, including nitrate concentrations, proportion of fine sediments in riffles, and the abundance of fish cover. We also found that variation in gradient (channel slope) influenced responses of fish assemblages to land use. Urban land use was more disruptive to biological integrity in catchments with steeper channel slopes. Based on comparisons of our results in the topographically diverse Opequon Creek watershed with results from watersheds in flatter terrains, we hypothesize that the potential for riparian forests to mitigate effects of deleterious land uses in upland portions of the watershed is inversely related to gradient.

Metric Similarity in Vegetation-Based Wetland Assessment Methods

EPA Science Inventory

Wetland vegetation is a recognized indicator group for wetland assessments, but until recently few published protocols used plant-based indicators. To examine the proliferation of such protocols since 1999, this report reviewed 20 published index of biotic integrity (IBI) type p...

Implementation of a Marauding Insect Module (MIM, version 1.0) in the Integrated BIosphere Simulator (IBIS, version 2.6b4) dynamic vegetation-land surface model

NASA Astrophysics Data System (ADS)

Landry, Jean-Sébastien; Price, David T.; Ramankutty, Navin; Parrott, Lael; Damon Matthews, H.

2016-04-01

Insects defoliate and kill plants in many ecosystems worldwide. The consequences of these natural processes on terrestrial ecology and nutrient cycling are well established, and their potential climatic effects resulting from modified land-atmosphere exchanges of carbon, energy, and water are increasingly being recognized. We developed a Marauding Insect Module (MIM) to quantify, in the Integrated BIosphere Simulator (IBIS), the consequences of insect activity on biogeochemical and biogeophysical fluxes, also accounting for the effects of altered vegetation dynamics. MIM can simulate damage from three different insect functional types: (1) defoliators on broadleaf deciduous trees, (2) defoliators on needleleaf evergreen trees, and (3) bark beetles on needleleaf evergreen trees, with the resulting impacts being estimated by IBIS based on the new, insect-modified state of the vegetation. MIM further accounts for the physical presence and gradual fall of insect-killed dead standing trees. The design of MIM should facilitate the addition of other insect types besides the ones already included and could guide the development of similar modules for other process-based vegetation models. After describing IBIS-MIM, we illustrate the usefulness of the model by presenting results spanning daily to centennial timescales for vegetation dynamics and cycling of carbon, energy, and water in a simplified setting and for bark beetles only. More precisely, we simulated 100 % mortality events from the mountain pine beetle for three locations in western Canada. We then show that these simulated impacts agree with many previous studies based on field measurements, satellite data, or modelling. MIM and similar tools should therefore be of great value in assessing the wide array of impacts resulting from insect-induced plant damage in the Earth system.

Using the index of biotic integrity (IBI) to measure environmental quality in warmwater streams of Wisconsin.

Treesearch

John Lyons

1992-01-01

Describes an index based on attributes of fish assemblages that has proven effective in assessing biotic integrity and environmental health in intermediate-sized, warmwater (i.e., too warm for salmonids) streams and rivers of Wisconsin. Provides detailed guidelines for applying this index.

Unlocking the relationship of biotic integrity of impaired waters to anthropogenic stresses.

PubMed

Novotny, Vladimir; Bartosová, Alena; O'Reilly, Neal; Ehlinger, Timothy

2005-01-01

The Clean Water Act expressed its goals in terms of restoring and preserving the physical, chemical and biological integrity of the Nation's waters. Integrity has been defined as the ability of the water body's ecological system to support and maintain a balanced integrated, adaptive community of organisms comparable to that of a natural biota of the region. Several indices of biotic integrity (IBIs) have been developed to measure quantitatively the biotic composition and, hence, the integrity. Integrity can be impaired by discharges of pollutants from point and nonpoint sources and by other pollution-related to watershed/landscape and channel stresses, including channel and riparian zone modifications and habitat impairment. Various models that link the stressors to the biotic assessment endpoints, i.e., the IBIs, have been presented and discussed. Simple models that link IBIs directly to single or multiple surrogate stressors such as percent imperviousness are inadequate because they may not represent a true cause-effect proximate relationship. Furthermore, some surrogate landscape parameters are irreversible and the relationships cannot be used for development of plans for restoration of the water body integrity. A concept of a layered hierarchical model that will link the watershed, landscape and stream morphology pollution stressors to the biotic assessment endpoints (IBIs) is described. The key groups of structural components of the model are: IBIs and their metrics in the top layer, chemical water and sediment risks and a habitat quality index in the layer below, in-stream concentrations in water and sediments and channel/habitat impairment parameters in the third layer, and watershed/landscaper pollution generating stressors, land use change rates, and hydrology in the lowest layer of stressors. A modified and expanded Maximum Species Richness concept is developed and used to reveal quantitatively the functional relationships between the top two layers of the structural components and parameters of the model.

39 CFR 501.7 - Postage Evidencing System requirements.

Code of Federal Regulations, 2013 CFR

2013-07-01

... Performance Criteria for Information-Based Indicia and Security Architecture for Open IBI Postage Evidencing Systems or Performance Criteria for Information-Based Indicia and Security Architecture for Closed IBI... Information-Based Indicia and Security Architecture for Open IBI Postage Evidencing Systems or Performance...

39 CFR 501.7 - Postage Evidencing System requirements.

Code of Federal Regulations, 2012 CFR

2012-07-01

... Performance Criteria for Information-Based Indicia and Security Architecture for Open IBI Postage Evidencing Systems or Performance Criteria for Information-Based Indicia and Security Architecture for Closed IBI... Information-Based Indicia and Security Architecture for Open IBI Postage Evidencing Systems or Performance...

NABS RESPONSE OF A MULTI-METRIC FISH BIOTIC INDEX TO SPECIES DECLINES

EPA Science Inventory

Multi-metric indices of biotic integrity (IBI) are commonly used to compare fish communities among streams, but ability to monitor trends within streams is largely unknown. We assessed the IBI trend detection ability using simulations which progressively degraded the fish assembl...

Development of a bacteria-based index of biotic integrity (Ba-IBI) for assessing ecological health of the Three Gorges Reservoir in different operation periods.

PubMed

Li, Yi; Yang, Nan; Qian, Bao; Yang, Zhengjian; Liu, Defu; Niu, Lihua; Zhang, Wenlong

2018-05-30

It is urgently needed to quantitatively assess ecological health of the Three Gorges Reservoir (TGR) when considering its special environmental conditions and temporal variations caused by reservoir operation. This study developed a bacteria-based index of biotic integrity (Ba-IBI) based on sediment samples collected along the TGR in low water level period, impoundment period and sluicing period, respectively. Reference conditions were defined using 8 ecological variables describing the hydromorphology and anthropogenic disturbances around the sites. Five core metrics, including % Acidobacteria, % Gemmatimonadetes, % Geobacter, Methanotroph and Phototroph, were selected after the screening processes. The developed index could clearly discriminate reference and impaired conditions and exhibited significant relationship with environmental parameters according to the redundancy (p < 0.01) and multivariable linear regression analysis (R 2  = 0.76). By implementing Ba-IBI in the TGR, the ecological health of the sampling sites was defined as "Excellent" (25%), "Good" (50%) and "Fair" (25%) separately. The spatial variation of biotic integrity was closely associated with environmental and ecological changes, especially the increase of nutrient concentrations. This study revealed a significant tendency that the ecological health in the low water level and sluicing periods was better than that in the impoundment period, which could be attributed to the hydrodynamic changes due to water level fluctuation. This study provides a comprehensive understanding of ecological health of the TGR in different operation periods and the index offers a guideline for the reservoir regulation in the similar areas. Copyright © 2018. Published by Elsevier B.V.

Predicting biological condition in southern California streams

USGS Publications Warehouse

Brown, Larry R.; May, Jason T.; Rehn, Andrew C.; Ode, Peter R.; Waite, Ian R.; Kennen, Jonathan G.

2012-01-01

As understanding of the complex relations among environmental stressors and biological responses improves, a logical next step is predictive modeling of biological condition at unsampled sites. We developed a boosted regression tree (BRT) model of biological condition, as measured by a benthic macroinvertebrate index of biotic integrity (BIBI), for streams in urbanized Southern Coastal California. We also developed a multiple linear regression (MLR) model as a benchmark for comparison with the BRT model. The BRT model explained 66% of the variance in B-IBI, identifying watershed population density and combined percentage agricultural and urban land cover in the riparian buffer as the most important predictors of B-IBI, but with watershed mean precipitation and watershed density of manmade channels also important. The MLR model explained 48% of the variance in B-IBI and included watershed population density and combined percentage agricultural and urban land cover in the riparian buffer. For a verification data set, the BRT model correctly classified 75% of impaired sites (B-IBI < 40) and 78% of unimpaired sites (B-IBI = 40). For the same verification data set, the MLR model correctly classified 69% of impaired sites and 87% of unimpaired sites. The BRT model should not be used to predict B-IBI for specific sites; however, the model can be useful for general applications such as identifying and prioritizing regions for monitoring, remediation or preservation, stratifying new bioassessments according to anticipated biological condition, or assessing the potential for change in stream biological condition based on anticipated changes in population density and development in stream buffers.

An evaluation of the discriminating power of an Integrated Ballistics Identification System® Heritage™system with the NIST standard cartridge case (Standard Reference Material 2461).

PubMed

Morris, Keith B; Law, Eric F; Jefferys, Roger L; Dearth, Elizabeth C; Fabyanic, Emily B

2017-11-01

Through analysis and comparison of firing pin, breech face, and ejector impressions, where appropriate, firearm examiners may connect a cartridge case to a suspect firearm with a certain likelihood in a criminal investigation. When a firearm is not present, an examiner may use the Integrated Ballistics Identification System (IBIS ® ), an automated search and retrieval system coupled with the National Integrated Ballistics Information Network (NIBIN), a database of images showing the markings on fired cartridge cases and bullets from crime scenes along with test fired firearms. For the purpose of measurement quality control of these IBIS ® systems the National Institute of Standards and Technology (NIST) initiated the Standard Reference Material (SRM) 2460/2461 standard bullets and cartridge cases project. The aim of this study was to evaluate the overall performance of the IBIS ® system by using NIST standard cartridge cases. By evaluating the resulting correlation scores, error rates, and percent recovery, both the variability between and within examiners when using IBIS ® , in addition to any inter- and intra-variability between SRM cartridge cases was observed. Copyright © 2017 Elsevier B.V. All rights reserved.

An Index of Biotic Integrity for shallow streams of the Hondo River basin, Yucatan Peninsula.

PubMed

Schmitter-Soto, Juan J; Ruiz-Cauich, Lissie E; Herrera, Roberto L; González-Solís, David

2011-01-15

An Index of Biotic Integrity (IBI) is proposed, based on the fish communities and populations in streams of the Hondo River basin, Mexico-Belize. Freshwater environments in this area are threatened by exotic fishes, eutrophication, and pesticide pollution, among other problems. This IBI should allow to identify the most vulnerable sites and eventually guide rehabilitation efforts. Data on composition, structure, and function of fish communities were evaluated. Twenty-three sites in the Mexican part of the basin were explored; a stratified sample of 13 sites was used to design the IBI, and the rest were used to test and refine the index. Thirty-four candidate indicator metrics were scanned for their correlation with an index of water and habitat quality (IWHQ), as well as for the possible influence of stream width and altitude or distance to the Hondo River mainstem. Twelve variables were selected to constitute the IBI: relative abundances of Astyanax aeneus, 'Cichlasoma' urophthalmus, Poecilia mexicana, Poecilia sp. (a new species, probably endemic to the upper Hondo River basin), Xiphophorus hellerii, and X. maculatus; relative abundances of bentholimnetic, herbivore, and sensitive species; percentage of native and tolerant species; and Pielou's evenness index. Most of the sites have a low-medium quality and integrity, showing impact due to partial channelization or to suboptimal water quality, reflected in scarcity or absence of sensitive species, frequent excess of tolerant species, occasional presence of exotics, dominance of herbivores (perhaps due to proliferation of filamentous algae), or dominance of the opportunistic species P. mexicana. The streams with better water and habitat quality are those farthest away from the river mainstem, probably because of lower human population and economical production. Copyright © 2010 Elsevier B.V. All rights reserved.

Development and validation of a bacteria-based index of biotic integrity for assessing the ecological status of urban rivers: A case study of Qinhuai River basin in Nanjing, China.

PubMed

Li, Jie; Li, Yi; Qian, Bao; Niu, Lihua; Zhang, Wenlong; Cai, Wei; Wu, Hainan; Wang, Peifang; Wang, Chao

2017-07-01

With the increasing human disturbance to urban rivers, the extinction and biodiversity losses of some macroorganism species decreased the accuracy of bioassessment. In this study, a novel index of biotic integrity based on bacteria (Ba-IBI) was first developed for Qinhuai River in Nanjing city, China. Thirty-two biofilm samples were collected along the river bank and the bacterial communities were identified by high-throughput sequencing. By the range, responsive, and redundancy tests, four core metrics were selected from the dataset of 78 candidate metrics, including Pielou's evenness index, proportion of Paenibacillus, proportion of OTUs tolerant to organic pollution and proportion of Nitrosomonas. The results showed that the Ba-IBI was able to effectively discriminate different impaired site groups, and had a good correlation with the index of water quality (r = 0.79, p < 0.01) and the qualitative habitat evaluation index (r = 0.51, p < 0.01). Moreover, the Ba-IBI was negatively correlated with the number of population within a 1 km buffer (r = -0.71, p < 0.01). Application of the index showed that most of the sites were in the poor or bad class in the river. Our study revealed that the Ba-IBI is an effective and reliable approach for assessing the ecological status of Qinhuai River basin, which can complement the existing ecological assessment approaches for urban rivers. Meanwhile, repeted surveys and field validations are still needed to further improve the applicability of the index in future studies. Copyright © 2017 Elsevier Ltd. All rights reserved.

The CMEMS IBI-MFC Forecasting Service in 2017: Evolution and Novelties associated to the CMEMS service release

NASA Astrophysics Data System (ADS)

Lorente, Pablo; Sotillo, Marcos G.; Gutknecht, Elodie; Dabrowski, Tomasz; Aouf, Lotfi; Toledano, Cristina; Amo-Baladron, Arancha; Aznar, Roland; De Pascual, Alvaro; Levier, Bruno; Bowyer, Peter; Rainaud, Romain; Alvarez-Fanjul, Enrique

2017-04-01

The IBI-MFC (Iberia-Biscay-Ireland Monitoring & Forecasting Centre) has been providing daily ocean model estimates and forecasts of diverse physical parameters for the IBI regional seas since 2011, first in the frame of MyOcean projects and later as part of the Copernicus Marine Environment Monitoring Service (CMEMS). By April 2017, coincident with the V3 CMEMS Service Release, the IBI-MFC will extend their near real time (NRT) forecast capabilities. Two new operational IBI forecast systems will be operationally run to generate high resolution biochemical (BIO) and wave (WAV) products on the IBI area. The IBI-NRT-BIO forecast system, based on a 1/36° NEMO-PISCES model application, is run once a week coupled with the IBI physical forecast solution and nested to the CMEMS GLOBAL-BIO solution. On the other hand, the IBI-NRT-WAV system, based on a MeteoFrance-WAM 10km resolution model application, runs twice a day using ECMWF wind forcing. Among other novelties related to the evolution of the IBI physical (PHY) solution, it is worthwhile mentioning the provision, as part of the IBI-NRT-PHY product daily updated, of three-dimensional hourly data on specific areas within the IBI domain. The delivery of these new hourly data along the whole water column has been achieved after the request from IBI users, in order to foster downscaling approaches by providing coherent open boundary conditions to any potential high-resolution coastal model nested to IBI regional solution. An extensive skill assessment of IBI-NRT forecast products has been conducted through the NARVAL (North Atlantic Regional VALidation) web tool, by means of the automatic computation of statistical metrics and quality indicators. By now, this tool has been focused on the validation of the IBI-NRT-PHY system. Nowadays, NARVAL is facing a significant upgrade to validate the aforementioned new biogeochemical and wave IBI products. To this aim, satellite derived observations of chlorophyll and significant wave height will be used, together with in-situ wave parameters measured by mooring buoys. Within this validation framework, special emphasis has been placed on the intercomparison of different forecast model solutions in overlapping areas in order to evaluate models' performances and prognostic capabilities. This common uncertainty estimates of IBI and other model solution is currently performed by NARVAL using both CMEMS forecast model sources (i.e. GLOBAL-MFC, MED-MFC and NWS-MFC) and non-CMEMS operational forecast solutions (mostly downstream application nested to the IBI solution). With respect to the IBI multi-year (MY) products, it is worth mentioning that the actual biogeochemical and physical reanalysis products will be re-run along year 2017, extending its time coverage backwards until 1992. Based on these IBI-MY products, a variety of climatic indicators related to essential oceanographic processes (i.e. western coastal upwelling or the Mediterranean Outflow Water) are currently being computed.

COMPARISON OF TWO INDICES OF BENTHIC COMMUNITY CONDITION IN CHESAPEAKE BAY

EPA Science Inventory

The Chesapeake Benthic Index of Biotic Integrity (B-IBI) and the EMAP-VP Benthic Index were applied to samples from 239 sites in Chesapeake Bay. The B-IBI weights several community measures equally and uses a simple scoring system while the EMAP-VP Benthic Index uses discriminant...

Electrofishing effort required to estimate biotic condition in southern Idaho Rivers

USGS Publications Warehouse

Maret, Terry R.; Ott, Douglas S.; Herlihy, Alan T.

2007-01-01

An important issue surrounding biomonitoring in large rivers is the minimum sampling effort required to collect an adequate number of fish for accurate and precise determinations of biotic condition. During the summer of 2002, we sampled 15 randomly selected large-river sites in southern Idaho to evaluate the effects of sampling effort on an index of biotic integrity (IBI). Boat electrofishing was used to collect sample populations of fish in river reaches representing 40 and 100 times the mean channel width (MCW; wetted channel) at base flow. Minimum sampling effort was assessed by comparing the relation between reach length sampled and change in IBI score. Thirty-two species of fish in the families Catostomidae, Centrarchidae, Cottidae, Cyprinidae, Ictaluridae, Percidae, and Salmonidae were collected. Of these, 12 alien species were collected at 80% (12 of 15) of the sample sites; alien species represented about 38% of all species (N = 32) collected during the study. A total of 60% (9 of 15) of the sample sites had poor IBI scores. A minimum reach length of about 36 times MCW was determined to be sufficient for collecting an adequate number of fish for estimating biotic condition based on an IBI score. For most sites, this equates to collecting 275 fish at a site. Results may be applicable to other semiarid, fifth-order through seventh-order rivers sampled during summer low-flow conditions.

INTEGRAL IBIS, SPI, and JEM-X observations of LVT151012

NASA Astrophysics Data System (ADS)

Savchenko, V.; Bazzano, A.; Bozzo, E.; Brandt, S.; Chenevez, J.; Courvoisier, T. J.-L.; Diehl, R.; Ferrigno, C.; Hanlon, L.; von Kienlin, A.; Kuulkers, E.; Laurent, P.; Lebrun, F.; Lutovinov, A.; Martin-Carrillo, A.; Mereghetti, S.; Natalucci, L.; Roques, J. P.; Siegert, T.; Sunyaev, R.; Ubertini, P.

2017-07-01

During the first observing run of LIGO, two gravitational wave events and one lower-significance trigger (LVT151012) were reported by the LIGO/Virgo collaboration. At the time of LVT151012, the INTErnational Gamma-Ray Astrophysics Laboratory (INTEGRAL) was pointing at a region of the sky coincident with the high localization probability area of the event and thus permitted us to search for its electromagnetic counterpart (both prompt and afterglow emission). The imaging instruments on board INTEGRAL (IBIS/ISGRI, IBIS/PICsIT, SPI, and the two JEM-X modules) have been exploited to attempt the detection of any electromagnetic emission associated with LVT151012 over three decades in energy (from 3 keV to 8 MeV). The omni-directional instruments on board the satellite, I.e., the SPI-ACS and the IBIS/Veto, complemented the capabilities of the IBIS/ISGRI and IBIS/PICsIT for detections outside their imaging field of view in order to provide an efficient monitoring of the entire LVT151012 localization region at energies above 75 keV. We did not find any significant transient source that was spatially and/or temporally coincident with LVT151012, obtaining tight upper limits on the associated hard X-ray and γ-ray radiation. For typical spectral models, the upper limits on the fluence of the emission from any 1 s counterpart of LVT151012 ranges from Fγ = 3.5 × 10-8 erg cm-2 (20-200 keV), within the field of view of the imaging instruments, to Fγ = 7.1 × 10-7 erg cm-2 (75-2000 keV), considering the least favorable location of the counterpart for a detection by the omni-directional instruments. These results can be interpreted as a tight constraint on the ratio of the isotropic equivalent energy released in the electromagnetic emission to the total energy of the gravitational waves: E75-2000 keV/EGW< 4.4 × 10-5. Finally, we provide an exhaustive summary of the capabilities of all instruments on board INTEGRAL to hunt for γ-ray counterparts of gravitational wave events, exploiting both serendipitousand pointed follow-up observations. This will serve as a reference for all future searches.

Biomonitoring of fish communities, using the Index of Biotic Integrity (IBI) in Rabbit Creek-Cat Creek Watershed, Summer 1992

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1993-08-01

The Index of Biotic Integrity (IBI) is a method for evaluating the health of water bodies and watersheds by analyzing sample catches of fishes. Sites are scored on a numerical scale of 12--60 and on that basis assigned to a ``bioclass`` ranging from ``very poor`` to ``excellent.`` Overall, the major causes of depressed IBI scores in the Rabbit Creek watershed would appear to be: Organic pollution, mostly from livestock, but also from agricultural runoff and possible septic tank failures; sedimentation, principally from stream bank damage by cattle, also possibly from agriculture and construction; toxic pollution from agrochemicals applied to Hollymore » Springs Golf course and agricultural fields` and Warming of water and evaporation loss due to elimination of shade on stream banks and construction of ponds.« less

Establishing Consistent Fish Sampling Methods for Biological Assessments on Inter-state Great Rivers: A Case Study on the Upper Mississippi River.

EPA Science Inventory

The use of Indices of Biotic Integrity (IBI) to assess aquatic waters has become an acceptable practice for many Clean Water Act (CWA) agencies. For states that share waters such as Minnesota and Wisconsin along the Mississippi River, the states’ respective IBIs may show vastly d...

C–IBI: Targeting cumulative coordination within an iterative protocol to derive coarse-grained models of (multi-component) complex fluids

DOE PAGES

de Oliveira, Tiago E.; Netz, Paulo A.; Kremer, Kurt; ...

2016-05-03

We present a coarse-graining strategy that we test for aqueous mixtures. The method uses pair-wise cumulative coordination as a target function within an iterative Boltzmann inversion (IBI) like protocol. We name this method coordination iterative Boltzmann inversion (C–IBI). While the underlying coarse-grained model is still structure based and, thus, preserves pair-wise solution structure, our method also reproduces solvation thermodynamics of binary and/or ternary mixtures. In addition, we observe much faster convergence within C–IBI compared to IBI. To validate the robustness, we apply C–IBI to study test cases of solvation thermodynamics of aqueous urea and a triglycine solvation in aqueous urea.

An index of biological integrity (IBI) for Pacific Northwest rivers

USGS Publications Warehouse

Mebane, C.A.; Maret, T.R.; Hughes, R.M.

2003-01-01

The index of biotic integrity (IBI) is a commonly used measure of relative aquatic ecosystem condition; however, its application to coldwater rivers over large geographic areas has been limited. A seven-step process was used to construct and test an IBI applicable to fish assemblages in coldwater rivers throughout the U.S. portion of the Pacific Northwest. First, fish data from the region were compiled from previous studies and candidate metrics were selected. Second, reference conditions were estimated from historical reports and minimally disturbed reference sites in the region. Third, data from the upper Snake River basin were used to test metrics and develop the initial index. Fourth, candidate metrics were evaluated for their redundancy, variability, precision, and ability to reflect a wide range of conditions while distinguishing reference sites from disturbed sites. Fifth, the selected metrics were standardized by being scored continuously from 0 to 1 and then weighted as necessary to produce an IBI ranging from 0 to 100. The resulting index included 10 metrics: number of native coldwater species, number of age-classes of sculpins Cottus spp., percentage of sensitive native individuals, percentage of coldwater individuals, percentage of tolerant individuals, number of alien species, percentage of common carp Cyprinus carpio individuals, number of selected salmonid age-classes, catch per unit effort of coldwater individuals, and percentage of individuals with selected anomalies. Sixth, the IBI responses were tested with additional data sets from throughout the Pacific Northwest. Last, scores from two minimally disturbed reference rivers were evaluated for longitudinal gradients along the river continuum. The IBI responded to environmental disturbances and was spatially and temporally stable at over 150 sites in the Pacific Northwest. The results support its use across a large geographic area to describe the relative biological condition of coolwater and coldwater rivers with low species richness.

Marine ecosystem health status assessment through integrative biomarker indices: a comparative study after the Prestige oil spill "Mussel Watch".

PubMed

Marigómez, Ionan; Garmendia, Larraitz; Soto, Manu; Orbea, Amaia; Izagirre, Urtzi; Cajaraville, Miren P

2013-04-01

Five integrative biomarker indices are compared: Bioeffects Assessment Index (BAI), Health Status Index (HSI), integrated biological response (IBR), ecosystem health condition chart (EHCC) and Integrative Biomarker Index (IBI). They were calculated on the basis of selected biomarker data collected in the framework of the Prestige oil spill (POS) Mussel Watch monitoring (2003-2006) carried out in Galicia and the Bay of Biscay. According to the BAI, the health status of mussels was severely affected by POS and signals of recovery were evidenced in Galicia after April-04 and in Biscay Bay after April-05. The HSI (computed by an expert system) revealed high levels of environmental stress in 2003 and a recovery trend from April-04 to April-05. In July-05, the health status of mussels worsened but in October-05 and April-06 healthy condition was again recorded in almost all localities. IBR/n and IBI indicated that mussel health was severely affected in 2003 and improved from 2004 onwards. EHCC reflected a deleterious environmental condition in 2003 and a recovery trend after April-04, although a healthy ecosystem condition was not achieved in April-06 yet. Whereas BAI and HSI provide a basic indication of the ecosystem health status, star plots accompanying IBR/n and IBI provide complementary information concerning the mechanisms of biological response to environmental insult. Overall, although the integrative indices based on biomarkers show different sensitivity, resolution and informative output, all of them provide coherent information, useful to simplify the interpretation of biological effects of pollution in marine pollution monitoring. Each others' advantages, disadvantages and applicability for ecosystem health assessment are discussed.

Comparison of Amplitude-Integrated EEG and Conventional EEG in a Cohort of Premature Infants.

PubMed

Meledin, Irina; Abu Tailakh, Muhammad; Gilat, Shlomo; Yogev, Hagai; Golan, Agneta; Novack, Victor; Shany, Eilon

2017-03-01

To compare amplitude-integrated EEG (aEEG) and conventional EEG (EEG) activity in premature neonates. Biweekly aEEG and EEG were simultaneously recorded in a cohort of infants born less than 34 weeks gestation. aEEG recordings were visually assessed for lower and upper border amplitude and bandwidth. EEG recordings were compressed for visual evaluation of continuity and assessed using a signal processing software for interburst intervals (IBI) and frequencies' amplitude. Ten-minute segments of aEEG and EEG indices were compared using regression analysis. A total of 189 recordings from 67 infants were made, from which 1697 aEEG/EEG pairs of 10-minute segments were assessed. Good concordance was found for visual assessment of continuity between the 2 methods. EEG IBI, alpha and theta frequencies' amplitudes were negatively correlated to the aEEG lower border while conceptional age (CA) was positively correlated to aEEG lower border ( P < .001). IBI and all frequencies' amplitude were positively correlated to the upper aEEG border ( P ≤ .001). CA was negatively correlated to aEEG span while IBI, alpha, beta, and theta frequencies' amplitude were positively correlated to the aEEG span. Important information is retained and integrated in the transformation of premature neonatal EEG to aEEG. aEEG recordings in high-risk premature neonates reflect reliably EEG background information related to continuity and amplitude.

IBIS integrated biological imaging system: electron micrograph image-processing software running on Unix workstations.

PubMed

Flifla, M J; Garreau, M; Rolland, J P; Coatrieux, J L; Thomas, D

1992-12-01

'IBIS' is a set of computer programs concerned with the processing of electron micrographs, with particular emphasis on the requirements for structural analyses of biological macromolecules. The software is written in FORTRAN 77 and runs on Unix workstations. A description of the various functions and the implementation mode is given. Some examples illustrate the user interface.

Linking multimetric and multivariate approaches to assess the ecological condition of streams.

PubMed

Collier, Kevin J

2009-10-01

Few attempts have been made to combine multimetric and multivariate analyses for bioassessment despite recognition that an integrated method could yield powerful tools for bioassessment. An approach is described that integrates eight macroinvertebrate community metrics into a Principal Components Analysis to develop a Multivariate Condition Score (MCS) from a calibration dataset of 511 samples. The MCS is compared to an Index of Biotic Integrity (IBI) derived using the same metrics based on the ratio to the reference site mean. Both approaches were highly correlated although the MCS appeared to offer greater potential for discriminating a wider range of impaired conditions. Both the MCS and IBI displayed low temporal variability within reference sites, and were able to distinguish between reference conditions and low levels of catchment modification and local habitat degradation, although neither discriminated among three levels of low impact. Pseudosamples developed to test the response of the metric aggregation approaches to organic enrichment, urban, mining, pastoral and logging stressor scenarios ranked pressures in the same order, but the MCS provided a lower score for the urban scenario and a higher score for the pastoral scenario. The MCS was calculated for an independent test dataset of urban and reference sites, and yielded similar results to the IBI. Although both methods performed comparably, the MCS approach may have some advantages because it removes the subjectivity of assigning thresholds for scoring biological condition, and it appears to discriminate a wider range of degraded conditions.

Buried Quasars in Ultraluminous Infrared Galaxies

NASA Technical Reports Server (NTRS)

Sanders, David B.

2004-01-01

We were awarded l00OkS of INTEGRAL spacecraft time (Priority A) to observe the ultraluminous infrared galaxy (ULIG) Mrk 2273 in order io measure the integrated flux of the 20-1003 KeV gamma-Ray emission, and to use this information to search for the presence of an highly obscured active galactic nucleus (AGN). With this observation we hope to be able to better assess the role of AGN in the complete class of ULIGs and therefore to better constrain their contribution to the hard X-ray and soft gamma-ray backgrounds. Our Priority A 100 kS observation of Mrk 273 was successfully carried out during revolution #73 using 4 separate exposures with the IBIS camera during May, 2003. Our IBIS observations of Mrk 273 were successfully executed, and the source was properly centered in the Field-of-view of the detectors. We are still in the process of interpreting the IBIS gamma-ray data.

Buried Quasars in Ultra-luminous Infrared Galaxies

NASA Technical Reports Server (NTRS)

2004-01-01

We were awarded l00kS of INTEGRAL spacecraft time (Priority A) to observe the ultraluminous infrared galaxy (ULIG) Mrk 2273 in order to measure the integrated flux of the 20-1003 KeV gamma-Ray emission, and to use this information to search for the presence of an highly obscured active galactic nucleus (AGN). With this observation we hope to be able to better assess the role of AGN in the complete class of ULIGs and therefore to better constrain their contribution to the hard X-ray and soft gamma-ray backgrounds. Our Priority A 100 kS observation of Mrk 273 was successfully carried out during revolution #73 using 4 separate exposures with the IBIS camera during May, 2003. Our IBIS observations of Mrk 273 were successfully executed, and the source was properly centered in the Field-of-view of the detectors. We are still in the process of interpreting the IBIS gamma-ray data.

INTEGRAL/IBIS 7-year All-Sky Hard X-ray Survey. I. Image reconstruction

NASA Astrophysics Data System (ADS)

Krivonos, R.; Revnivtsev, M.; Tsygankov, S.; Sazonov, S.; Vikhlinin, A.; Pavlinsky, M.; Churazov, E.; Sunyaev, R.

2010-09-01

This paper is the first in a series devoted to the hard X-ray whole sky survey performed by the INTEGRAL observatory over seven years. Here we present an improved method for image reconstruction with the IBIS coded mask telescope. The main improvements are related to the suppression of systematic effects that strongly limit sensitivity in the region of the Galactic plane (GP), especially in the crowded field of the Galactic center (GC). We extended the IBIS/ISGRI background model to take into account the Galactic ridge X-ray emission (GRXE). To suppress residual systematic artifacts on a reconstructed sky image, we applied nonparametric sky image filtering based on wavelet decomposition. The implemented modifications of the sky reconstruction method decrease the systematic noise in the ~20 Ms deep field of GC by ~44%, and practically remove it from the high-latitude sky images. New observational data sets, along with an improved reconstruction algorithm, allow us to conduct the hard X-ray survey with the best currently available minimal sensitivity 3.7 × 10-12 erg s-1 cm-2 ~ 0.26 mCrab in the 17-60 keV band at a 5σ detection level. The survey covers 90% of the sky down to the flux limit of 6.2 × 10-11 erg s-1 cm-2 (~4.32 mCrab) and 10% of the sky area down to the flux limit of 8.6 × 10-12 erg s-1 cm-2 (~0.60 mCrab). Based on observations with INTEGRAL, an ESA project with the instruments and science data center funded by ESA member states (especially the PI countries: Denmark, France, Germany, Italy, Switzerland, Spain), Czech Republic, and Poland, and with the participation of Russia and the USA.

Construction of non-Markovian coarse-grained models employing the Mori-Zwanzig formalism and iterative Boltzmann inversion

NASA Astrophysics Data System (ADS)

Yoshimoto, Yuta; Li, Zhen; Kinefuchi, Ikuya; Karniadakis, George Em

2017-12-01

We propose a new coarse-grained (CG) molecular simulation technique based on the Mori-Zwanzig (MZ) formalism along with the iterative Boltzmann inversion (IBI). Non-Markovian dissipative particle dynamics (NMDPD) taking into account memory effects is derived in a pairwise interaction form from the MZ-guided generalized Langevin equation. It is based on the introduction of auxiliary variables that allow for the replacement of a non-Markovian equation with a Markovian one in a higher dimensional space. We demonstrate that the NMDPD model exploiting MZ-guided memory kernels can successfully reproduce the dynamic properties such as the mean square displacement and velocity autocorrelation function of a Lennard-Jones system, as long as the memory kernels are appropriately evaluated based on the Volterra integral equation using the force-velocity and velocity-velocity correlations. Furthermore, we find that the IBI correction of a pair CG potential significantly improves the representation of static properties characterized by a radial distribution function and pressure, while it has little influence on the dynamic processes. Our findings suggest that combining the advantages of both the MZ formalism and IBI leads to an accurate representation of both the static and dynamic properties of microscopic systems that exhibit non-Markovian behavior.

Historical and current perspectives on fish assemblages of the Snake River, Idaho and Wyoming

USGS Publications Warehouse

Maret, T.R.; Mebane, C.A.

2005-01-01

The Snake River is the tenth longest river in the United States, extending 1,667 km from its origin in Yellowstone National Park in western Wyoming to its union with the Columbia River at Pasco, Washington. Historically, the main-stem Snake River upstream from the Hells Canyon Complex supported at least 26 native fish species, including anadromous stocks of Chinook salmon Oncorhynchus tshawytscha, steelhead O. mykiss, Pacific lamprey Lampetra tridentata, and white sturgeon Acipenser transmontanus. Of these anadromous species, only the white sturgeon remains in the Snake River between the Hells Canyon Complex and Shoshone Falls. Today, much of the Snake River has been transformed into a river with numerous impoundments and flow diversions, increased pollutant loads, and elevated water temperatures. Current (1993-2002) fish assemblage collections from 15 sites along the Snake River and Henrys Fork contained 35 fish species, including 16 alien species. Many of these alien species such as catfish (Ictaluridae), carp (Cyprinidae), and sunfish (Centrarchidae) are adapted for warmwater impounded habitats. Currently, the Snake River supports 19 native species. An index of biotic integrity (IBI), developed to evaluate large rivers in the Northwest, was used to evaluate recent (1993-2002) fish collections from the Snake River and Henrys Fork in southern Idaho and western Wyoming. Index of biotic integrity site scores and component metrics revealed a decline in biotic integrity from upstream to downstream in both the Snake River and Henrys Fork. Two distinct groups of sites were evident that correspond to a range of IBI scores-an upper Snake River and Henrys Fork group with relatively high biotic integrity (mean IBI scores of 46-84) and a lower Snake River group with low biotic integrity (mean IBI scores of 10-29). Sites located in the lower Snake River exhibited fish assemblages that reflect poor-quality habitat where coldwater and sensitive species are rare or absent, and where tolerant, less desirable species predominate. Increases in percentages of agricultural land, total number of diversions, and number of constructed channels were strongly associated with these decreasing IBI scores.

Some technical considerations on the evolution of the IBIS system. [Image Based Information System

NASA Technical Reports Server (NTRS)

Bryant, N. A.; Zobrist, A. L.

1982-01-01

In connection with work related to the use of earth-resources images, it became apparent by 1974, that certain system improvements are necessary for the efficient processing of digital data. To resolve this dilemma, Billingsley and Bryant (1975) proposed the use of image processing technology. Bryant and Zobrist (1976) reported the development of the Image Based Information System (IBIS) as a subset of an overall Video Image Communication and Retrieval (VICAR) image processing system. A description of IBIS is presented, and its employment in connection with advanced applications is discussed. It is concluded that several important lessons have been learned from the development of IBIS. The development of a flexible system such as IBIS is found to rest upon the prior development of a general purpose image processing system, such as VICAR.

39 CFR 501.7 - Postage Evidencing System requirements.

Code of Federal Regulations, 2014 CFR

2014-07-01

... Information-Based Indicia and Security Architecture for Open IBI Postage Evidencing Systems or Performance Criteria for Information-Based Indicia and Security Architecture for Closed IBI Postage Metering Systems...

When a Standard Candle Flickers: Crab Nebula Variations in Hard X-rays

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, M. L.; Case, G. L.; Baumgartner, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camero-Arranz, A.; Chaplin, V.; Connaughton, V.;

Using dual classifications in the development of avian wetland indices of biological integrity for wetlands in West Virginia, USA.

PubMed

Veselka, Walter; Anderson, James T; Kordek, Walter S

2010-05-01

Considerable resources are being used to develop and implement bioassessment methods for wetlands to ensure that "biological integrity" is maintained under the United States Clean Water Act. Previous research has demonstrated that avian composition is susceptible to human impairments at multiple spatial scales. Using a site-specific disturbance gradient, we built avian wetland indices of biological integrity (AW-IBI) specific to two wetland classification schemes, one based on vegetative structure and the other based on the wetland's position in the landscape and sources of water. The resulting class-specific AW-IBI was comprised of one to four metrics that varied in their sensitivity to the disturbance gradient. Some of these metrics were specific to only one of the classification schemes, whereas others could discriminate varying levels of disturbance regardless of classification scheme. Overall, all of the derived biological indices specific to the vegetative structure-based classes of wetlands had a significant relation with the disturbance gradient; however, the biological index derived for floodplain wetlands exhibited a more consistent response to a local disturbance gradient. We suspect that the consistency of this response is due to the inherent nature of the connectivity of available habitat in floodplain wetlands.

Grazed Riparian Management and Stream Channel Response in Southeastern Minnesota (USA) Streams

NASA Astrophysics Data System (ADS)

Magner, Joseph A.; Vondracek, Bruce; Brooks, Kenneth N.

2008-09-01

The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response.

Grazed riparian management and stream channel response in southeastern Minnesota (USA) streams

USGS Publications Warehouse

Magner, J.A.; Vondracek, B.; Brooks, K.N.

2008-01-01

The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response. ?? 2008 Springer Science+Business Media, LLC.

Development of an IBI-based assessment of depressional wetlands in Maryland and Delaware

USGS Publications Warehouse

Sparling, D.W.; Keller, Michael; Lowe, T.P.; Perry, M.; Teels, B.; Brown, L.; Mazanti, L.; Melvin, N.

1997-01-01

The hydrogeomorphic approach (HGM) of wetland assessment emphasizes functional components of wetlands such as water storage, transformation and cycling of elements, accumulation of sediments, and preservation of habitats. Many of the elements measured in HGM are physical rather than ecological or biological. The HGM approach, therefore, provides information on certain aspects of wetlands and omits other aspects. In contrast, the Index of Biological Integrity (IBI) approach focuses on biological components of wetlands such as species richness, the presence or proportion of certain 'indicator' species, representation of different trophic levels, and measures of wildlife or fish health. Here too, some aspects of a wetland are omitted and others not covered by HGM are included. We contend that these differences in focus add strengths and weaknesses to each method. This paper reviews progress on the development of IBIs for restored depressional wetlands in the Mid-Atlantic States, especially Maryland and Delaware. During our first field season we identified 25 wetlands ranging from 1-10 acres, most of which were restored with federal, state, and private landowner cooperation over hydric soils. Separate IBIs are being created for macrophytes, macroinvertebrates, amphibians, and data on mammal and avian populations are being collected. Simultaneously, chemical and physical data are being collected on water DO, turbidity, temperature, conductivity, nitrates, ammonia, chlorophyll, pH; soil metal levels and texture; and wetland size, configuration, hydrology, drainage area, and surrounding land use.

Ictalurids in Iowa’s streams and rivers: Status, distribution, and relationships with biotic integrity

USGS Publications Warehouse

Sindt, Anthony R.; Fischer, Jesse R.; Quist, Michael C.; Pierce, Clay

2011-01-01

Anthropogenic alterations to Iowa’s landscape have greatly altered lotic systems with consequent effects on the biodiversity of freshwater fauna. Ictalurids are a diverse group of fishes and play an important ecological role in aquatic ecosystems. However, little is known about their distribution and status in lotic systems throughout Iowa. The purpose of this study was to describe the distribution of ictalurids in Iowa and examine their relationship with ecological integrity of streams and rivers. Historical data (i.e., 1884–2002) compiled for the Iowa Aquatic Gap Analysis Project (IAGAP) were used to detect declines in the distribution of ictalurids in Iowa streams and rivers at stream segment and watershed scales. Eight variables characterizing ictalurid assemblages were used to evaluate relationships with index of biotic integrity (IBI) ratings. Comparisons of recent and historic data from the IAGAP database indicated that 9 of Iowa’s 10 ictalurid species experienced distribution declines at one or more spatial scales. Analysis of variance indicated that ictalurid assemblages differed among samples with different IBI ratings. Specifically, total ictalurid, sensitive ictalurid, and Noturus spp. richness increased as IBI ratings increased. Results indicate declining ictalurid species distributions and biotic integrity are related, and management strategies aimed to improve habitat and increase biotic integrity will benefit ictalurid species.

COMPARABILITY OF A REGIONAL AND STATE SURVEY: EFFECTS ON FISH IBI ASSESSMENT FOR WEST VIRGINIA, U.S.A.

EPA Science Inventory

The comparability of different survey designs needs to be established to facilitate integration of data across scales and interpretation of trends over time. Probability-based survey designs are now being investigated to allow condition to be assessed at the watershed scale, an...

Use of survey data to develop sediment criteria for protecting aquatic vertebrates in mountain streams

EPA Science Inventory

We examined the relationship of aquatic vertebrate taxa abundances and an index of biotic integrity (IBI) to reachwide measures of areal percent streambed surficial fines (≤ 0.06 mm) and sand and fines (≤ 2 mm), based on data collected from 557 wadeable streams in the Western Mou...

Developing terrestrial, multi-taxon indices of biological integrity: An example from coastal sage scrub

USGS Publications Warehouse

Diffendorfer, J.E.; Fleming, G.M.; Duggan, J.M.; Chapman, R.E.; Rahn, M.E.; Mitrovich, M.J.; Fisher, R.N.

2007-01-01

We screened 351 species or genera for their response to disturbance in coastal sage scrub (CSS) to develop a 15-metric, 5-taxon Index of Biological Integrity (IBI). We collected data on ants, birds, herpetofauna, small mammals, and plants for two years on 46 sites established across a gradient of disturbance in three reserves. The gradient spanned relatively intact CSS with thick stands of shrubs, to former CSS stands type-converted to exotic grasses. ANOVAs and clustering analyses indicated the IBI could distinguish four levels of disturbance in CSS. General measures of community structure, such as richness, did not show changes across the gradient for most taxa, and responses of taxa across the gradient were varied and rarely correlated. However, turnover in species or genera across the gradient was common across all taxa as shrub-obligate life forms were replaced by those favoring grassy or disturbed habitats. Our data indicate index-based approaches based on data collected across disturbance gradients may outperform more traditional community level metrics when responses to anthropogenic influences are complex and vary across species. ?? 2007 Elsevier Ltd. All rights reserved.

Index of cyber integrity

NASA Astrophysics Data System (ADS)

Anderson, Gustave

2014-05-01

Unfortunately, there is no metric, nor set of metrics, that are both general enough to encompass all possible types of applications yet specific enough to capture the application and attack specific details. As a result we are left with ad-hoc methods for generating evaluations of the security of our systems. Current state of the art methods for evaluating the security of systems include penetration testing and cyber evaluation tests. For these evaluations, security professionals simulate an attack from malicious outsiders and malicious insiders. These evaluations are very productive and are able to discover potential vulnerabilities resulting from improper system configuration, hardware and software flaws, or operational weaknesses. We therefore propose the index of cyber integrity (ICI), which is modeled after the index of biological integrity (IBI) to provide a holistic measure of the health of a system under test in a cyber-environment. The ICI provides a broad base measure through a collection of application and system specific metrics. In this paper, following the example of the IBI, we demonstrate how a multi-metric index may be used as a holistic measure of the health of a system under test in a cyber-environment.

Evaluating temporal changes in stream condition in three New Jersey rive basins by using an index of biotic integrity

USGS Publications Warehouse

Chang, Ming; Kennen, Jonathan G.; Del Corso, Ellyn

2000-01-01

An index of biotic integrity (!B!) modified for New Jersey streams was used to compare changes in stream condition from the 1970s to the 1990s in Delaware, Passaic, and Raritan River Basins. Stream condition was assessed at 88 sampling locations. Mean IBI scores for all basins increased from the 1970s to the 1990s, but the stream-condition category improved (from fair to good) only for the Delaware River Basin. The number of benthic insectivores and the proportion of insectivorous cyprinds increased in all three basins; however, the number of white suckers decreased significantly only in the Delaware River Basin. Results of linear-regression analysis indicate a significant correlation between the percentage of altered land in the basin and change in IBI score (1970s to 1990s) for Delaware River sites. Results of analysis of variance of the rank-transformed IBI scores for the 1970s and 1990s indicate that the three basins was equal in the 1970s. Results of a multiple-comparison test demonstrated that the 1990s IBI values for the Delaware River Basin differed significantly from those for the Passaic and Raritan River Basins. Many factors, such as the imposition of the more stringent standards on water-water and industrial discharges during the 1980s and changes in land-use practices, likely contributed to the change in the Delaware River Basin. A general increase in IBI values for the Passaic, Raritan, and Delaware River Basins over the past 25 years appears to reflect overall improvements in water quality.

Increasing the acceptance of internet-based mental health interventions in primary care patients with depressive symptoms. A randomized controlled trial.

PubMed

Ebert, D D; Berking, M; Cuijpers, P; Lehr, D; Pörtner, M; Baumeister, H

2015-05-01

Internet-based interventions (IBI) are effective in treating depression. However, uptake rates in routine care are still limited. Hence, this study aimed to (1) assess the acceptance of IBIs in primary care patients with depressive symptoms and to (2) examine the effects of a brief acceptance facilitating intervention in the form of an informational video on patients' acceptance of IBIs. Primary care patients (N=128) with Minor or Major Depression were randomly assigned to an intervention (IG) or control group (CG). Patients in the IG were shown a brief informational video about IBIs before receiving a questionnaire that assessed their acceptance of IBIs and other secondary outcomes. Patients of the CG filled out the questionnaire immediately. Baseline acceptance of IBIs in the CG was high for 6.3%, moderate for 53.1% and low for 40.6% of patients. Acceptance of IBIs was significantly higher in the IG when compared to the CG (d=.71, 95%-CI:.09-2.91). Except for social influence and the general attitude towards psychological treatment, all secondary outcomes were also significantly improved (e.g. effort- (d=.40) and performance-expectancy: d=.65; knowledge about Internet interventions d=.35). Depression of the participants was only assessed using a self-report measure (PHQ-9). Primary care patients' acceptance of IBIs for depressive symptoms was low but could be increased significantly using a brief acceptance facilitating intervention on the basis of an informational video. Future studies should further examine the potential of acceptance facilitating interventions for patients and health care providers to exploit the public health impact of IBIs. Copyright © 2015 Elsevier B.V. All rights reserved.

Boosted Regression Tree Models to Explain Watershed ...

EPA Pesticide Factsheets

Boosted regression tree (BRT) models were developed to quantify the nonlinear relationships between landscape variables and nutrient concentrations in a mesoscale mixed land cover watershed during base-flow conditions. Factors that affect instream biological components, based on the Index of Biotic Integrity (IBI), were also analyzed. Seasonal BRT models at two spatial scales (watershed and riparian buffered area [RBA]) for nitrite-nitrate (NO2-NO3), total Kjeldahl nitrogen, and total phosphorus (TP) and annual models for the IBI score were developed. Two primary factors — location within the watershed (i.e., geographic position, stream order, and distance to a downstream confluence) and percentage of urban land cover (both scales) — emerged as important predictor variables. Latitude and longitude interacted with other factors to explain the variability in summer NO2-NO3 concentrations and IBI scores. BRT results also suggested that location might be associated with indicators of sources (e.g., land cover), runoff potential (e.g., soil and topographic factors), and processes not easily represented by spatial data indicators. Runoff indicators (e.g., Hydrological Soil Group D and Topographic Wetness Indices) explained a substantial portion of the variability in nutrient concentrations as did point sources for TP in the summer months. The results from our BRT approach can help prioritize areas for nutrient management in mixed-use and heavily impacted watershed

Physical, chemical, and biological characteristics of selected headwater streams along the Allegheny Front, Blair County, Pennsylvania, July 2011–September 2013

USGS Publications Warehouse

Low, Dennis J.; Brightbill, Robin A.; Eggleston, Heather L.; Chaplin, Jeffrey J.

2016-02-29

Biotic health was characterized at 10 of 12 stream sites; the two sites excluded were established late in the study period (May 2013) for refinement of water quality in the headwaters of Poplar Run and the location of Marcellus Formation gas wells. On the basis of the Maryland Index of Biotic Integrity (MdIBI) for fish assemblages, 8 of 10 streams can be considered in fair health. Tipton Run had the highest MdIBI score (3.75) and the greatest number of native species. South Poplar Run had the lowest MdIBI score (1.75); pollution tolerant blacknose dace was dominant. On the basis of the Pennsylvania Department of Environmental Protection macroinvertebrate index of biotic integrity, 9 of 10 streams were characterized as attaining, with scores as high as 88.9 at Tipton Run. Only Sugar Run was characterized as impaired, with a score of 40.4.

Integrated Blade Inspection System (IBIS) Upgrade Study

DTIC Science & Technology

1992-12-01

the maintenance contract for the IBIS is equally divided among its 4-1 three major components, then the FPIM’s maintenance costs account for 33% of...network to the blade inspection problem, the output of the network must be interpreted in a slightly different manner to account for the cost of the...missed detections, respectively. The costs associated with the two types of error are drastically different and should be accounted for in the

CONTROLLING FOR NATURAL VARIABILITY IN ASSESSING THE RESPONSE OF FISH METRICS TO HUMAN PRESSURES FOR LAKES IN NORTHEAST USA

EPA Science Inventory

1 While fish-based Indices of Biotic Integrity (IBIs) have been developed for a wide array of lotic systems, equivalent tools have seldom been adapted to the monitoring and assessment of lakes. Major difficulties arise in such work: (i) collecting data that allow statistically robus...

Wetland habitat disturbance best predicts metrics of an amphibian index of biotic integrity

USGS Publications Warehouse

Stapanian, Martin A.; Micacchion, Mick; Adams, Jean V.

2015-01-01

Regression and classification trees were used to identify the best predictors of the five component metrics of the Ohio Amphibian Index of Biotic Integrity (AmphIBI) in 54 wetlands in Ohio, USA. Of the 17 wetland- and surrounding landscape-scale variables considered, the best predictor for all AmphIBI metrics was habitat alteration and development within the wetland. The results were qualitatively similar to the best predictors for a wetland vegetation index of biotic integrity, suggesting that similar management practices (e.g., reducing or eliminating nutrient enrichment from agriculture, mowing, grazing, logging, and removing down woody debris) within the boundaries of the wetland can be applied to effectively increase the quality of wetland vegetation and amphibian communities.

Army technology development. IBIS query. Software to support the Image Based Information System (IBIS) expansion for mapping, charting and geodesy

NASA Technical Reports Server (NTRS)

Friedman, S. Z.; Walker, R. E.; Aitken, R. B.

1986-01-01

The Image Based Information System (IBIS) has been under development at the Jet Propulsion Laboratory (JPL) since 1975. It is a collection of more than 90 programs that enable processing of image, graphical, tabular data for spatial analysis. IBIS can be utilized to create comprehensive geographic data bases. From these data, an analyst can study various attributes describing characteristics of a given study area. Even complex combinations of disparate data types can be synthesized to obtain a new perspective on spatial phenomena. In 1984, new query software was developed enabling direct Boolean queries of IBIS data bases through the submission of easily understood expressions. An improved syntax methodology, a data dictionary, and display software simplified the analysts' tasks associated with building, executing, and subsequently displaying the results of a query. The primary purpose of this report is to describe the features and capabilities of the new query software. A secondary purpose of this report is to compare this new query software to the query software developed previously (Friedman, 1982). With respect to this topic, the relative merits and drawbacks of both approaches are covered.

Provably secure identity-based identification and signature schemes from code assumptions

PubMed Central

Zhao, Yiming

2017-01-01

Code-based cryptography is one of few alternatives supposed to be secure in a post-quantum world. Meanwhile, identity-based identification and signature (IBI/IBS) schemes are two of the most fundamental cryptographic primitives, so several code-based IBI/IBS schemes have been proposed. However, with increasingly profound researches on coding theory, the security reduction and efficiency of such schemes have been invalidated and challenged. In this paper, we construct provably secure IBI/IBS schemes from code assumptions against impersonation under active and concurrent attacks through a provably secure code-based signature technique proposed by Preetha, Vasant and Rangan (PVR signature), and a security enhancement Or-proof technique. We also present the parallel-PVR technique to decrease parameter values while maintaining the standard security level. Compared to other code-based IBI/IBS schemes, our schemes achieve not only preferable public parameter size, private key size, communication cost and signature length due to better parameter choices, but also provably secure. PMID:28809940

Provably secure identity-based identification and signature schemes from code assumptions.

PubMed

Song, Bo; Zhao, Yiming

2017-01-01

Code-based cryptography is one of few alternatives supposed to be secure in a post-quantum world. Meanwhile, identity-based identification and signature (IBI/IBS) schemes are two of the most fundamental cryptographic primitives, so several code-based IBI/IBS schemes have been proposed. However, with increasingly profound researches on coding theory, the security reduction and efficiency of such schemes have been invalidated and challenged. In this paper, we construct provably secure IBI/IBS schemes from code assumptions against impersonation under active and concurrent attacks through a provably secure code-based signature technique proposed by Preetha, Vasant and Rangan (PVR signature), and a security enhancement Or-proof technique. We also present the parallel-PVR technique to decrease parameter values while maintaining the standard security level. Compared to other code-based IBI/IBS schemes, our schemes achieve not only preferable public parameter size, private key size, communication cost and signature length due to better parameter choices, but also provably secure.

Narrow-line Seyfert 1 galaxies at hard X-rays

NASA Astrophysics Data System (ADS)

Panessa, F.; de Rosa, A.; Bassani, L.; Bazzano, A.; Bird, A.; Landi, R.; Malizia, A.; Miniutti, G.; Molina, M.; Ubertini, P.

2011-11-01

Narrow-line Seyfert 1 (NLSy1) galaxies are a peculiar class of type 1 active galactic nuclei (broad-line Seyfert 1 galaxies, hereinafter BLSy1). The X-ray properties of individual objects belonging to this class are often extreme and associated with accretion at high Eddington ratios. Here, we present a study on a sample of 14 NLSy1 galaxies selected at hard X-rays (>20 keV) from the fourth INTEGRAL/IBIS catalogue. The 20-100 keV IBIS spectra show hard-X-ray photon indices flatly distributed (Γ20-100 keV ranging from ˜1.3 to ˜3.6) with an average value of <Γ20-100 keV>= 2.3 ± 0.7, compatible with a sample of hard-X-ray BLSy1 average slopes. Instead, NLSy1 galaxies show steeper spectral indices with respect to BLSy1 galaxies when broad-band spectra are considered. Indeed, we combine XMM-Newton and Swift/XRT with INTEGRAL/IBIS data sets to obtain a wide energy spectral coverage (0.3-100 keV). A constraint on the high energy cut-off and on the reflection component is achieved only in one source, SWIFT J2127.4+5654 (Ecut-off˜ 50 keV, R= 1.0+0.5- 0.4). Hard-X-ray-selected NLSy1 galaxies do not display particularly strong soft excess emission, while absorption fully or partially covering the continuum is often measured as well as Fe line emission features. Variability is a common trait in this sample, both at X-rays and at hard X-rays. The fraction of NLSy1 galaxies in the hard-X-ray sky is likely to be ˜15 per cent, in agreement with estimates derived in optically selected NLSy1 samples. We confirm the association of NLSy1 galaxies with small black hole masses with a peak at 107 M⊙ in the distribution; however, hard-X-ray NLSy1 galaxies seem to occupy the lower tail of the Eddington ratio distribution of classical NLSy1 galaxies. Based on observations obtained with the INTEGRAL/IBIS, XMM-Newton and Swift/XRT.

Application of digital image processing techniques and information systems to water quality monitoring of Lake Tahoe

NASA Technical Reports Server (NTRS)

Smith, A. Y.; Blackwell, R. J.

1981-01-01

The Tahoe basin occupies over 500 square miles of territory located in a graben straddling the boundary between California and Nevada. Lake Tahoe contains 126 million acre-feet of water. Since the 1950's the basin has experienced an ever increasing demand for land development at the expense of the natural watershed. Discharge of sediment to the lake has greatly increased owing to accelerated human interference, and alterations to the natural drainage patterns are evident in some areas. In connection with an investigation of the utility of a comprehensive system that takes into account the causes as well as the effects of lake eutrophication, it has been attempted to construct an integrated and workable data base, comprised of currently available data sources for the Lake Tahoe region. Attention is given to the image based information system (IBIS), the construction of the Lake Tahoe basin data base, and the application of the IBIS concept to the Lake Tahoe basin.

78 FR 7820 - Notice of Intelligent Mail Indicia Performance Criteria

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-04

... FURTHER INFORMATION CONTACT: Marlo Kay Ivey, Business Programs Specialist, Payment Technology, U.S. Postal... Performance Criteria and Security Architecture for Open Information Based Indicia (IBI) Postage Evidencing Systems and the Performance Criteria and Security Architecture for Closed Information Based Indicia (IBI...

A Qualitative Phenomenology of Christian Middle School Implementation of Inquiry-based Science Instruction

NASA Astrophysics Data System (ADS)

Ferrin, Patricia Ann

The purpose of this qualitative phenomenology study will be to explore curriculum coordinators, teachers, and principals' implementation of Inquiry-Based Instruction (IBI) in Christian middle school science classes in the central Virginia area. IBI will be referred to as "a teaching method that combines the curiosity of students and the scientific method to enhance the development of critical thinking skills while learning science" (Warner & Myers, 2008, p.3). A qualitative phenomenology study will be made to consider the requirements and implementation of IBI in the Christian middle schools as compared to the requirements and implementation of IBI in the National Science Education Standard (NSES). Curriculum coordinators, teachers, and principals, and participated in this study from five Christian middle schools in the central Virginia area. The guiding theories include John Dewey's (1948) Constructivism, Lev Vygotsky's (1998) Social Constructivism, and William Glasser's (2005) Choice Theory as they relate to the beliefs curriculum coordinators, teachers, and principals have regarding the implementation of IBI. A primary research question for this study is, "If research supports successful outcomes of IBI, then how and why do Christian CMSST, principals, and curriculum coordinators implement or not implement IBI?" Interviews, classroom observations, and document reviews were used for triangulation and data collection. The data analysis used in this study were completed by using Moustakas' (1994) seven step thematic coding derived from the observations, interview transcriptions, and school documents in the form of lesson plans and objectives (Merriam, 2009; Moustakas, 1994).

Patterns of resource partitioning by nesting herons and ibis: how are odonata exploited?

PubMed

Samraoui, Farrah; Nedjah, Riad; Boucheker, Abdennour; Alfarhan, Ahmed H; Samraoui, Boudjéma

2012-04-01

Herons and ibis are colonially nesting waders which, owing to their number, mobility and trophic role as top predators, play a key role in aquatic ecosystems. They are also good biological models to investigate interspecific competition between sympatric species and predation; two processes which structure ecological communities. Odonata are also numerous, diverse, mobile and can play an important role in aquatic ecosystems by serving as prey for herons and ibis. A relationship between prey size and bird predator has been observed in Numidia wetlands (NE Algeria) after analyzing food boluses regurgitated by six species of birds (Purple Heron, Black-crowned Night Heron, Glossy Ibis, Little Egret, Squacco Heron and Cattle Egret) during the breeding period, which also shows a temporal gradient for the six species. Both the Levins index and preliminary multivariate analysis of the Odonata as prey fed to nestling herons and ibis, indicated a high degree of resource overlap. However, a distinction of prey based on taxonomy (suborder and family) and developmental stage (larvae or adults) reveals a clear size dichotomy with large-sized predators (Purple Heron, Black-crowned Night Heron and Glossy Ibis) preying on large preys like Aeshnids and Libellulids and small-sized predators feeding mainly on small prey like Zygoptera. Overall, the resource utilization suggests a pattern of resource segregation by coexisting nesting herons and ibis based on the timing of reproduction, prey types, prey size and foraging microhabitats. Copyright © 2012 Académie des sciences. Published by Elsevier SAS. All rights reserved.

Effects of urbanization on the geomorphology, habitat, hydrology, and fish index of biotic integrity of streams in the Chicago area, Illinois and Wisconsin

USGS Publications Warehouse

Fitzpatrick, F.A.; Diebel, M.W.; Harris, M.A.; Arnold, T.L.; Lutz, M.A.; Richards, K.D.

2005-01-01

Effects of urbanization on geomorphic, habitat, and hydrologic characteristics and fish biotic integrity of 45 streams in the Chicago area were examined by the U.S. Geological Survey from 2000 to 2001. An agricultural to urban land-cover gradient approach was used. Landscape characteristics such as texture of surficial deposits, slope, riparian land cover, and stream network position also were examined to determine if these factors influenced the effects of urbanization. Among geomorphic characteristics, channel enlargement occurred in urban streams with a high percent of watershed clayey surficial deposits. Other geomorphic and habitat characteristics such as stream power, fine substrate, and amount of riffles did not correlate with percent watershed urban land but instead correlated with reach slope. Bank erosion, habitat variability, and two habitat indexes did not correlate with watershed urban land. Below 30% watershed urban land, the unit area discharge for a 2-year flood increased with increasing urban land; however, above 30% urban land, unit area discharges for a 2-year flood were variable, most likely due to variations in stormwater management practices, point-source contributions, and the transport index. Streams with greater than 33% watershed urban land had low base flow, but the effects of urbanization on base flow were offset by point-source contributions. Fish index of biotic integrity (IBI) scores were low in streams with greater than 25% watershed urban land. Fish IBI scores also were low in streams with high percentages of watershed clayey surficial deposits and enlarged channels. The amount of riparian forest/wetland buffer had no moderating effect on geomorphic/habitat/hydrologic characteristics and fish IBI scores. Variations in the texture and topography of glacial landforms affected reach slope and some habitat characteristics. Longitudinal profiles were useful for distinguishing differences in local geologic settings among sampled sites.

Comparison of manually produced and automated cross country movement maps using digital image processing techniques

NASA Technical Reports Server (NTRS)

Wynn, L. K.

1985-01-01

The Image-Based Information System (IBIS) was used to automate the cross country movement (CCM) mapping model developed by the Defense Mapping Agency (DMA). Existing terrain factor overlays and a CCM map, produced by DMA for the Fort Lewis, Washington area, were digitized and reformatted into geometrically registered images. Terrain factor data from Slope, Soils, and Vegetation overlays were entered into IBIS, and were then combined utilizing IBIS-programmed equations to implement the DMA CCM model. The resulting IBIS-generated CCM map was then compared with the digitized manually produced map to test similarity. The numbers of pixels comprising each CCM region were compared between the two map images, and percent agreement between each two regional counts was computed. The mean percent agreement equalled 86.21%, with an areally weighted standard deviation of 11.11%. Calculation of Pearson's correlation coefficient yielded +9.997. In some cases, the IBIS-calculated map code differed from the DMA codes: analysis revealed that IBIS had calculated the codes correctly. These highly positive results demonstrate the power and accuracy of IBIS in automating models which synthesize a variety of thematic geographic data.

Science Teachers' Understanding and Practice of Inquiry-Based Instruction in Uganda

NASA Astrophysics Data System (ADS)

Ssempala, Fredrick

High school students in Uganda perform poorly in science subjects despite the Ugandan government's efforts to train science teachers and build modern science laboratories in many public high schools. The poor performance of students in science subjects has been largely blamed on the inability by many science teachers to teach science through Inquiry-Based Instruction (IBI) to motivate the students to learn science. However, there have been no empirical studies done to establish the factors that influence science teachers' understanding and practice of IBI in Uganda. Most of the published research on IBI has been conducted in developed countries, where the prevailing contexts are very different from the contexts in developing countries such as Uganda. Additionally, few studies have explored how professional development (PD) training workshops on inquiry and nature of science (NOS) affect chemistry teachers' understanding and practice of IBI. My purpose in this multi-case exploratory qualitative study was to explore the effect of a PD workshop on inquiry and NOS on chemistry teachers' understanding and practice of IBI in Kampala city public schools in Uganda. I also explored the relationship between chemistry teachers' NOS understanding and the nature of IBI implemented in their classrooms and the internal and external factors that influence teachers' understanding and practice of IBI. I used a purposive sampling procedure to identify two schools of similar standards from which I selected eight willing chemistry teachers (four from each school) to participate in the study. Half of the teachers (those from School A) attended the PD workshop on inquiry and NOS for six days, while the control group (those from School B) did not. I collected qualitative data through semi-structured interviews, classroom observation, and document analysis. I analyzed these data by structural, conceptual and theoretical coding approach. I established that all the participating chemistry teachers had insufficient understanding of IBI at the beginning of the study. However, teachers from School A improved their understanding and practice of IBI after attending the PD workshop. I also found that the participating chemistry teachers' NOS epistemological views were, to some extent, related to the nature of IBI implemented in their classroom. The main internal factors the participating teachers perceived to influence their understanding and practice of IBI were their attitudes and teaching experience, whereas the external factors were lack of motivation, lack of necessary instructional materials, mode of assessment, class size, the nature of pre-service and in-service training, support from peer teachers and limited time in relation to many lessons and much content to cover Based on the above findings, I conclude that the current science teacher training in Uganda may not be improving science teachers' understanding and practice of IBI, and most of the factors are beyond their control (external). Hence, there is an urgent need for teacher educators and policymakers in Uganda to address the internal and external factors influencing science teachers' understanding and practice of IBI to improve the teaching and learning of science subjects. Additionally, more quantitative and qualitative studies should be done among teachers of different disciplines to establish how the above factors and others affect teachers' understanding and practice of IBI in developing countries like Uganda.

Intercomparison of different operational oceanographic forecast products in the CMEMS IBI area

NASA Astrophysics Data System (ADS)

Lorente, Pablo; Sotillo, Marcos G.; Dabrowski, Tomasz; Amo-Baladrón, Arancha; Aznar, Roland; De Pascual, Alvaro; Levier, Bruno; Bowyer, Peter; Cossarini, Gianpiero; Salon, Stefano; Tonani, Marina; Alvarez-Fanjul, Enrique

2017-04-01

The development of skill assessment software packages and dedicated web applications is a relatively novel theme in operational oceanography. Within the CMEMS IBI-MFC, the quality of IBI (Iberia-Biscay-Ireland) forecast products is assessed by means of NARVAL (North Atlantic Regional VALidation) web-based tool. The validation of IBI against independent in situ and remote-sensing measurements is routinely conducted to evaluate model's veracity and prognostic capabilities. Noticeable efforts are in progress to define meaningful skill scores and statistical metrics to quantitatively assess the quality and reliability of the IBI model solution. Likewise, the IBI-MFC compares the IBI forecast products with other model solutions by setting up specific intercomparison exercises on overlapping areas at diverse timescales. In this context, NARVAL web tool already includes a specific module to evaluate strengths and weaknesses of IBI versus other CMEMS operational ocean forecasting systems (OOFSs). In particular, the IBI physical ocean solution is compared against the CMEMS MED and NWS OOFSs. These CMEMS regional services delivered for the Mediterranean and the North West Shelves include data assimilation schemes in their respective operational chains and generate analogous ocean forecast products to the IBI ones. A number of physical parameters (i.e. sea surface temperature, salinity and current velocities) are evaluated through NARVAL on a daily basis in the overlapping areas existing between these three regional systems. NARVAL is currently being updated in order to extend this intercomparison of ocean model parameters to the biogeochemical solutions provided by the aforementioned OOFSs. More specifically, the simulated chlorophyll concentration is evaluated over several subregions of particular concern by using as benchmark the CMEMS satellite-derived observational products. In addition to this IBI comparison against other regional CMEMS products on overlapping areas, a specific intercomparison between the CMEMS GLOBAL solution and the IBI (regional application dynamically embedded in the former) is conducted in order to check its consistency and ability to outperform the parent model solution. Particular emphasis is placed on the comparison of time-series at specified locations (class-2 metrics). The standardized validation methodology presented here is particularly useful and could encompass the intercomparison of the regional application (IBI) and other nested higher resolution models at coastal/shelf scales to quantify the added value of downscaling in local downstream approaches.

The All-Sky Swift - INTEGRAL X-Ray Survey

NASA Astrophysics Data System (ADS)

Michelson, Peter

All-sky surveys at hard X-ray energies (above 15 keV) have proven to be a powerful technique in detecting Galactic and extragalactic source populations. Most of the radiation at hard X-ray energies originates in non-thermal processes. These processes take place in extreme conditions of gravitational fields, of electromagnetic field, and also in explosive events. Such extreme conditions can be found in the Milk Way in the vicinity of neutron stars, black holes, and supernovae. Also extragalactic sources are known to be hard X-ray emitters like Active Galactic Nuclei (AGNs), blazars, and Clusters of Galaxies. Currently the most sensitive flying hard X-ray detectors are the Burst Alert Telescope (BAT) on board the NASA mission Swift and the INTEGRAL Soft-Gamma Ray Imager (IBIS/ISGRI) on board the ESA mission INTEGRAL. BAT and IBIS/ISGRI are coded- mask telescopes that shed continuously light on the Galactic and the extragalactic source populations. However, coded-mask telescopes suffer from heavy systematic effects (errors) preventing them from reaching their theoretical limiting sensitivity. Furthermore, by design, they block ~50% of the incident photons causing and increase of statistical noise. As a consequence BAT and IBIS/ISGRI are not sensitive enough to detect faint objects. In addition it has been proven that the Galactic survey of these instruments is limited by systematic uncertainties. Therefore, further observations on the Galactic plane will not improve the sensitivity of the survey of BAT and IBIS/ISGRI. In this project we show that it is possible to overcome the limits of BAT and of IBIS/ISGRI by combining their observations in the 18 55 keV energy range. We call it the SIX survey that stands for Swift - INTEGRAL X-ray survey. Two major advantages are obtained by merging the observations of BAT and IBIS/ISGRI: 1) the exposure is greatly enhanced (sum of BAT and IBIS/ISGRI) and therefore the sensitivity is improved; 2) the systematic errors of both instruments are not correlated and therefore the resulting SIX survey suffers less from systematic uncertainties. We propose to perform the all-sky SIX survey. We have performed a pilot SIX survey on 6200 deg2 (~15%) of sky area. The results obtained from this survey allow us to make precise predictions on the results that we expect when surveying the entire sky with the SIX. We aim to study extragalactic and Galactic source populations. The AGN sample will be used to address their evolution in the local Universe (z < 0.4), that is marginally detected in the pilot SIX survey. Blazars will be detected at high redshift (z>4) and we will probe their evolution. We expect to detect new Clusters of Galaxies constraining their physical environment. With the sample derived from the Galactic plane we will perform the X-ray luminosity function of High Mass X-ray Binaries and study their connection to the Star Formation Rate of the Milky Way. Finally we expect new discoveries as it is likely possible with a survey of a virtual new mission.

Can we trust intraoperative culture results in nonunions?

PubMed

Palmer, Michael P; Altman, Daniel T; Altman, Gregory T; Sewecke, Jeffrey J; Ehrlich, Garth D; Hu, Fen Z; Nistico, Laura; Melton-Kreft, Rachel; Gause, Trent M; Costerton, John W

2014-07-01

To identify the presence of bacterial biofilms in nonunions comparing molecular techniques (multiplex polymerase chain reaction and mass spectrometry, fluorescent in situ hybridization) with routine intraoperative cultures. Thirty-four patients with nonunions were scheduled for surgery and enrolled in this ongoing prospective study. Intraoperative specimens were collected from removed implants, surrounding tissue membrane, and local soft tissue followed by standard culture analysis, Ibis's second generation molecular diagnostics (Ibis Biosystems), and bacterial 16S rRNA-based fluorescence in situ hybridization (FISH). Confocal microscopy was used to visualize the tissue specimens reacted with the FISH probes, which were chosen based on the Ibis analysis. Thirty-four patient encounters were analyzed. Eight were diagnosed as infected nonunions by positive intraoperative culture results. Ibis confirmed the presence of bacteria in all 8 samples. Ibis identified bacteria in a total of 30 of 34 encounters, and these data were confirmed by FISH. Twenty-two of 30 Ibis-positive samples were culture-negative. Four samples were negative by all methods of analysis. No samples were positive by culture, but negative by molecular techniques. Our preliminary data indicate that molecular diagnostics are more sensitive for identifying bacteria than cultures in cases of bony nonunion. This is likely because of the inability of cultures to detect biofilms and bacteria previously exposed to antibiotic therapy. Diagnostic Level I. See Instructions for Authors for a complete description of levels of evidence.

Cost-effectiveness of Wait Time Reduction for Intensive Behavioral Intervention Services in Ontario, Canada.

PubMed

Piccininni, Caroline; Bisnaire, Lise; Penner, Melanie

2017-01-01

Earlier access to intensive behavioral intervention (IBI) is associated with improved outcomes for children with severe autism spectrum disorder (ASD); however, there are long waiting times for this program. No analyses have been performed modeling the cost-effectiveness of wait time reduction for IBI. To model the starting age for IBI with reduced wait time (RWT) (by half) and eliminated wait time (EWT), and perform a cost-effectiveness analysis comparing RWT and EWT with current wait time (CWT) from government and societal perspectives. Published waiting times were used to model the mean starting age for IBI for CWT, RWT, and EWT in children diagnosed with severe ASD who were treated at Ontario's Autism Intervention Program. Inputs were loaded into a decision analytic model, with an annual discount rate of 3% applied. Incremental cost-effectiveness ratios (ICERs) were determined. One-way and probabilistic sensitivity analyses were performed to assess the effect of model uncertainty. We used data from the year 2012 (January 1 through December 31) provided from the Children's Hospital of Eastern Ontario IBI center for the starting ages. Data analysis was done from May through July 2015. The outcome was independence measured in dependency-free life-years (DFLYs) to 65 years of age. To derive this, expected IQ was modeled based on probability of early (age <4 years) or late (age ≥4 years) access to IBI. Probabilities of having an IQ in the normal (≥70) or intellectual disability (<70) range were calculated. The IQ strata were assigned probabilities of achieving an independent (60 DFLYs), semidependent (30 DFLYs), or dependent (0 DFLYs) outcome. Costs were calculated for provincial government and societal perspectives in Canadian dollars (Can$1 = US$0.78). The mean starting ages for IBI were 5.24 years for CWT, 3.89 years for RWT, and 2.71 years for EWT. From the provincial government perspective, EWT was the dominant strategy, generating the most DFLYs for Can$53 000 less per individual to 65 years of age than CWT. From the societal perspective, EWT produced lifetime savings of Can$267 000 per individual compared with CWT. The ICERs were most sensitive to uncertainty in the starting age for IBI and in achieving a normal IQ based on starting age. This study predicts the long-term effect of the current disparity between IBI service needs and the amount of IBI being delivered in the province of Ontario. The results suggest that providing timely access optimizes IBI outcomes, improves future independence, and lessens costs from provincial and societal perspectives.

Modeling the spatial-temporal dynamics of net primary production in Yangtze River Basin using IBIS model

USGS Publications Warehouse

Zhang, Z.; Jiang, H.; Liu, J.; Zhu, Q.; Wei, X.; Jiang, Z.; Zhou, G.; Zhang, X.; Han, J.

2011-01-01

The climate change has significantly affected the carbon cycling in Yangtze River Basin. To better understand the alternation pattern for the relationship between carbon cycling and climate change, the net primary production (NPP) were simulated in the study area from 1956 to 2006 by using the Integrated Biosphere Simulator (IBIS). The results showed that the average annual NPP per square meter was about 0.518 kg C in Yangtze River Basin. The high NPP levels were mainly distributed in the southeast area of Sichuan, and the highest value reached 1.05 kg C/m2. The NPP increased based on the simulated temporal trends. The spatiotemporal variability of the NPP in the vegetation types was obvious, and it was depended on the climate and soil condition. We found the drought climate was one of critical factor that impacts the alterations of the NPP in the area by the simulation. ?? 2011 IEEE.

Simulation of the West African Monsoon using the MIT Regional Climate Model

NASA Astrophysics Data System (ADS)

Im, Eun-Soon; Gianotti, Rebecca L.; Eltahir, Elfatih A. B.

2013-04-01

We test the performance of the MIT Regional Climate Model (MRCM) in simulating the West African Monsoon. MRCM introduces several improvements over Regional Climate Model version 3 (RegCM3) including coupling of Integrated Biosphere Simulator (IBIS) land surface scheme, a new albedo assignment method, a new convective cloud and rainfall auto-conversion scheme, and a modified boundary layer height and cloud scheme. Using MRCM, we carried out a series of experiments implementing two different land surface schemes (IBIS and BATS) and three convection schemes (Grell with the Fritsch-Chappell closure, standard Emanuel, and modified Emanuel that includes the new convective cloud scheme). Our analysis primarily focused on comparing the precipitation characteristics, surface energy balance and large scale circulations against various observations. We document a significant sensitivity of the West African monsoon simulation to the choices of the land surface and convection schemes. In spite of several deficiencies, the simulation with the combination of IBIS and modified Emanuel schemes shows the best performance reflected in a marked improvement of precipitation in terms of spatial distribution and monsoon features. In particular, the coupling of IBIS leads to representations of the surface energy balance and partitioning that are consistent with observations. Therefore, the major components of the surface energy budget (including radiation fluxes) in the IBIS simulations are in better agreement with observation than those from our BATS simulation, or from previous similar studies (e.g Steiner et al., 2009), both qualitatively and quantitatively. The IBIS simulations also reasonably reproduce the dynamical structure of vertically stratified behavior of the atmospheric circulation with three major components: westerly monsoon flow, African Easterly Jet (AEJ), and Tropical Easterly Jet (TEJ). In addition, since the modified Emanuel scheme tends to reduce the precipitation amount, it improves the precipitation over regions suffering from systematic wet bias.

Video Information Communication and Retrieval/Image Based Information System (VICAR/IBIS)

NASA Technical Reports Server (NTRS)

Wherry, D. B.

1981-01-01

The acquisition, operation, and planning stages of installing a VICAR/IBIS system are described. The system operates in an IBM mainframe environment, and provides image processing of raster data. System support problems with software and documentation are discussed.

Relations between retired agricultural land, water quality, and aquatic-community health, Minnesota River Basin

USGS Publications Warehouse

Christensen, Victoria G.; Lee, Kathy E.; McLees, James M.; Niemela, Scott L.

2012-01-01

The relative importance of agricultural land retirement on water quality and aquatic-community health was investigated in the Minnesota River Basin. Eighty-two sites, with drainage areas ranging from 4.3 to 2200 km2, were examined for nutrient concentrations, measures of aquatic-community health (e.g., fish index of biotic integrity [IBI] scores), and environmental factors (e.g., drainage area and amount of agricultural land retirement). The relation of proximity of agricultural land retirement to the stream was determined by calculating the land retirement percent in various riparian zones. Spearman's rho results indicated that IBI score was not correlated to the percentage of agricultural land retirement at the basin scale (p = 0.070); however, IBI score was correlated to retired land percentage in the 50- to 400-m riparian zones surrounding the streams (p < 0.05), indicating that riparian agricultural land retirement may have more influence on aquatic-community health than does agricultural land retirement in upland areas. Multivariate analysis of covariance and analysis of covariance models indicated that other environmental factors (such as drainage area and lacustrine and palustrine features) commonly were correlated to aquatic-community health measures, as were in-stream factors (standard deviation of water depth and substrate type). These results indicate that although agricultural land retirement is significantly related to fish communities as measured by the IBI scores, a combination of basin, riparian, and in-stream factors act together to influence IBI scores.

DEVELOPMENT AND EVALUATION OF A FISH ASSEMBLAGE INDEX OF BIOTIC INTEGRITY FOR NORTHWESTERN GREAT PLAINS STREAMS

EPA Science Inventory

Quantitative indicators of biological integrity are needed for streams in the Great Plains of North America, but it was not known if the Index of Biotic Integrity (IBI) approach would be effective in this semi-arid region. Great Plains streams have a depauperate and tolerant i...

Associations of benthic macroinvertebrate assemblages with environmental variables in the upper Clear Creek watershed, California

USGS Publications Warehouse

Brown, Larry R.; May, Jason T.; Wulff, Marissa

2012-01-01

Benthic macroinvertebrates are integral components of stream ecosystems and are often used to assess the ecological integrity of streams. We sampled streams in the upper Clear Creek drainage in the Klamath—Siskiyou Ecoregion of northwestern California in fall 2004 (17 sites) and 2005 (original 17 plus 4 new sites) with the objectives of documenting the benthic macroinvertebrate assemblages supported by the streams in the area, determining how those assemblages respond to environmental variables, assessing the biological condition of the streams using a benthic index of biotic integrity (IBI), and understanding the assemblages in the context of biodiversity of the ecoregion. We collected both reach-wide (RW) and targeted-riffle (TR) macroinvertebrate samples at each site. The macroinvertebrate assemblages were diverse, with over 150 genera collected for each sampling protocol. The macroinvertebrate assemblages appeared to be most responsive to a general habitat gradient based on stream size, gradient, flow, and dominance of riffles. A second important habitat gradient was based on elevation and dominance of riffles. A gradient in water quality based on concentrations of dissolved ions and metals was also important. Models based on these 3 gradients had Spearman's rank correlations with macroinvertebrate taxonomic composition of 0.60 and 0.50 for the TR and RW samples, respectively. The majority (>50%) of the sites were in good or very good biological condition based on IBI scores. The diversity of macroinvertebrate assemblages is associated with the diversity of habitats available in the Klamath—Siskiyou Ecoregion. Maintaining the aquatic habitats in good condition is important in itself but is also vital to maintaining biodiversity in this diverse and unique ecoregion.

Nitrogen controls on ecosystem carbon sequestration: a model implementation and application to Saskatchewan, Canada

USGS Publications Warehouse

Liu, J.; Price, D.T.; Chen, J.M.

2005-01-01

A plant–soil nitrogen (N) cycling model was developed and incorporated into the Integrated BIosphere Simulator (IBIS) of Foley et al. [Foley, J.A., Prentice, I.C., Ramankutty, N., Levis, S., Pollard, D., Sitch, S., Haxeltine, A., 1996. An integrated biosphere model of land surface process, terrestrial carbon balance and vegetation dynamics. Global Biogeochem. Cycles 10, 603–628]. In the N-model, soil mineral N regulates ecosystem carbon (C) fluxes and ecosystem C:N ratios. Net primary productivity (NPP) is controlled by feedbacks from both leaf C:N and soil mineral N. Leaf C:N determines the foliar and canopy photosynthesis rates, while soil mineral N determines the N availability for plant growth and the efficiency of biomass construction. Nitrogen controls on the decomposition of soil organic matter (SOM) are implemented through N immobilization and mineralization separately. The model allows greater SOM mineralization at lower mineral N, and conversely, allows greater N immobilization at higher mineral N. The model's seasonal and inter-annual behaviours are demonstrated. A regional simulation for Saskatchewan, Canada, was performed for the period 1851–2000 at a 10 km × 10 km resolution. Simulated NPP was compared with high-resolution (1 km × 1 km) NPP estimated from remote sensing data using the boreal ecosystem productivity simulator (BEPS) [Liu, J., Chen, J.M., Cihlar, J., Park, W.M., 1997. A process-based boreal ecosystem productivity simulator using remote sensing inputs. Remote Sens. Environ. 44, 81–87]. The agreement between IBIS and BEPS, particularly in NPP spatial variation, was considerably improved when the N controls were introduced into IBIS.

Comparison of NASA-TLX scale, Modified Cooper-Harper scale and mean inter-beat interval as measures of pilot mental workload during simulated flight tasks.

PubMed

Mansikka, Heikki; Virtanen, Kai; Harris, Don

2018-04-30

The sensitivity of NASA-TLX scale, modified Cooper-Harper (MCH) scale and the mean inter-beat interval (IBI) of successive heart beats, as measures of pilot mental workload (MWL), were evaluated in a flight training device (FTD). Operational F/A-18C pilots flew instrument approaches with varying task loads. Pilots' performance, subjective MWL ratings and IBI were measured. Based on the pilots' performance, three performance categories were formed; high-, medium- and low-performance. Values of the subjective rating scales and IBI were compared between categories. It was found that all measures were able to differentiate most task conditions and there was a strong, positive correlation between NASA-TLX and MCH scale. An explicit link between IBI, NASA-TLX, MCH and performance was demonstrated. While NASA-TLX, MCH and IBI have all been previously used to measure MWL, this study is the first one to investigate their association in a modern FTD, using a realistic flying mission and operational pilots.

EMAP - WEST COMMUNICATIONS, INDICES OF BIOTIC INTEGRITY

EPA Science Inventory

One of the key elements of EMAP-West is to develop biological indicators of condition of the streams and rivers of the West. The development and use of Indicators of Biological Integrity (IBI) are described for the 12 western State in EMAP-West. A key addition to the early work...

DEVELOPMENT OF A FISH INDEX OF BIOTIC INTEGRITY FOR ASSESSING WADEABLE STREAMS IN WEST VIRGINIA

EPA Science Inventory

We used Environmental Monitoring Assessment Program (EMAP) data from the Mid-Atlantic Highlands Assessment (MAHA) to develop an Index of Biotic Integrity (IBI) for West Virginia (WV). Standard techniques were used to evaluate a candidate pool of 58 fish assemblage metrics. Resp...

76 FR 39299 - Shortpaid and Unpaid Information-Based Indicia (IBI) Postage and Shortpaid Express Mail Postage

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-06

... process to appeal USPS decisions relative to shortpaid and unpaid IBI postage. During this process... the Postal Service's proposal to use an electronic notification process to recover revenue... an agreement and a process in place to obtain e-mail addresses will receive an electronic...

Effects of landscape and riparian condition on a fish index of biotic integrity in a large southeastern Brazil river

EPA Science Inventory

Environmental conditions of a large river in southeastern Brazil were assessed by evaluating fish assemblage structure (index of biotic integrity, IBI), landscape use (forest, pasture, urban area, and tributary water) and riparian condition. A survey of the 338 km-long middle rea...

[Influence of road on breeding habitat of Nipponia nippon based on MaxEnt model].

PubMed

Zhang, Hui; Gao, Ji Xi; Ma, Meng Xiao; Shao, Fang Ze; Wang, Qiao; Li, Guang Yu; Qiu, Jie; Zhou, Ke Xin

2017-04-18

Quantitative study on effects of roads on suitable breeding habitats of wildlife is one of topics that need in-depth research in road ecology. Crested ibis (Nipponia nippon), a first class nationally protected bird species, is the species of interest in this research. Using the Maximum Entropy Models (MaxEnt) in the Species Distribution Model (SDM) toolbox of ArcGIS, autocorrelation of environmental variables were analyzed and environmental variables with r>0.8 were removed. Ten environmental variables were chosen as impact factors for the breeding habitat of crested ibis, including mean temperature of coldest quarter, landscape type, normalized difference vegetation index(NDVI), slope, aspect, distance to waters, distance to paddy field, distance to high-grade roads (expressway, national way, provincial way), and distance to low-grade roads (country road). By analyzing the contribution rate of each environmental variable, the results showed that the mean temperature of coldest quarter, landscape type, distance to paddy field, and distance to high-grade roads were the main factors determining breeding habitat of crested ibis. The suitable distribution of crested ibis' nesting area was under the following scenarios: variable road present (scenario1), high-grade road absent (scenario2), and low-grade road absent (scenario 3). The results showed that the presence of roads affected suitable nesting areas of crested ibis with high-grade roads showing a larger influence than low-grade roads. The presence of high-grade roads and low-grade roads decreased the suitable nesting areas of crested ibis by 66.23 and 35.69 km 2 , respectively. The crested ibis preferred to nest in areas distant from high-grade roads, with an average road avoidance distance of 1500 m. This study was of great significance for formulating management measures to protect crested ibis and provide a reference for quantitative assessment on impacts of engineering and construction projects on wildlife.

Are two systemic fish assemblage sampling programmes on the upper Mississippi River telling us the same thing?

USGS Publications Warehouse

Dukerschein, J.T.; Bartels, A.D.; Ickes, B.S.; Pearson, M.S.

2013-01-01

We applied an Index of Biotic Integrity (IBI) used on Wisconsin/Minnesota waters of the upper Mississippi River (UMR) to compare data from two systemic sampling programmes. Ability to use data from multiple sampling programmes could extend spatial and temporal coverage of river assessment and monitoring efforts. We normalized for effort and tested fish community data collected by the Environmental Monitoring and Assessment Program-Great Rivers Ecosystems (EMAP-GRE) 2004–2006 and the Long Term Resource Monitoring Program (LTRMP) 1993–2006. Each programme used daytime electrofishing along main channel borders but with some methodological and design differences. EMAP-GRE, designed for baseline and, eventually, compliance monitoring, used a probabilistic, continuous design. LTRMP, designed primarily for baseline and trend monitoring, used a stratified random design in five discrete study reaches. Analysis of similarity indicated no significant difference between EMAP-GRE and LTRMP IBI scores (n=238; Global R= 0.052; significance level=0.972). Both datasets distinguished clear differences only between 'Fair' and 'Poor' condition categories, potentially supporting a 'pass–fail' assessment strategy. Thirteen years of LTRMP data demonstrated stable IBI scores through time in four of five reaches sampled. LTRMP and EMAPGRE IBI scores correlated along the UMR's upstream to downstream gradient (df [3, 25]; F=1.61; p=0.22). A decline in IBI scores from upstream to downstream was consistent with UMR fish community studies and a previous, empirically modelled human disturbance gradient. Comparability between EMAP-GRE (best upstream to downstream coverage) and LTRMP data (best coverage over time and across the floodplain) supports a next step of developing and testing a systemic, multi-metric fish index on the UMR that both approaches could inform.

Hydrologic variability and the application of Index of Biotic Integrity metrics to wetlands: a Great Lakes evaluation

USGS Publications Warehouse

Wilcox, Douglas A.; Meeker, James E.; Hudson, Patrick L.; Armitage, Brian J.; Black, M. Glen; Uzarski, Donald G.

2002-01-01

Interest by land-management and regulatory agencies in using biological indicators to detect wetland degradation, coupled with ongoing use of this approach to assess water quality in streams, led to the desire to develop and evaluate an Index of Biotic Integrity (IBI) for wetlands that could be used to categorize the level of degradation. We undertook this challenge with data from coastal wetlands of the Great Lakes, which have been degraded by a variety of human disturbances. We studied six barrier beach wetlands in western Lake Superior, six drowned-river-mouth wetlands along the eastern shore of Lake Michigan, and six open shoreline wetlands in Saginaw Bay of Lake Huron. Plant, fish, and invertebrate communities were sampled in each wetland. The resulting data were assessed in various forms against gradients of human disturbance to identify potential metrics that could be used in IBI development. Our results suggested that the metrics proposed as potential components of an IBI for barrier beach wetlands of Lake Superior held promise. The metrics for Lake Michigan drowned-river-mouth wetlands were inconsistent in identifying gradients of disturbance; those for Lake Huron open embayment wetlands were yet more inconsistent. Despite the potential displayed by the Lake Superior results within the year sampled, we concluded that an IBI for use in Great Lakes wetlands would not be valid unless separate scoring ranges were derived for each of several sequences of water-level histories. Variability in lake levels from year to year can produce variability in data and affect the reproducibility of data collected, primarily due to extreme changes in plant communities and the faunal habitat they provide. Substantially different results could be obtained in the same wetland in different years as a result of the response to lake-level change, with no change in the level of human disturbance. Additional problems included limited numbers of comparable sites, potential lack of undisturbed reference sites, and variable effects of different disturbance types. We also evaluated our conclusions with respect to hydrologic variability and other major natural disturbances affecting wetlands in other regions. We concluded that after segregation of wetland types by geographic, geomorphic, and hydrologic features, a functional IBI may be possible for wetlands with relatively stable hydrology. However, an IBI for wetlands with unpredictable yet recurring influences of climate-induced, long-term high water periods, droughts, or drought-related fires or weather-related catastrophic floods or high winds (hurricanes) would also require differing scales of measurement for years that differ in the length of time since the last major natural disturbance. A site-specific, detailed ecological analysis of biological indicators may indeed be of value in determining the quality or status of wetlands, but we recommend that IBI scores not be used unless the scoring ranges are calibrated for the specific hydrologic history pre-dating any sampling year.

Bioassessment in nonperennial streams: Hydrologic stability influences assessment validity

NASA Astrophysics Data System (ADS)

Mazor, R. D.; Stein, E. D.; Schiff, K.; Ode, P.; Rehn, A.

2011-12-01

Nonperennial streams pose a challenge for bioassessment, as assessment tools developed in perennial streams may not work in these systems. For example, indices of biotic integrity (IBIs) developed in perennial streams may give improper indications of impairment in nonperennial streams, or may be unstable. We sampled benthic macroinvertebrates from 12 nonperennial streams in southern California. In addition, we deployed loggers to obtain continuous measures of flow. 3 sites were revisited over 2 years. For each site, we calculated several metrics, IBIs, and O/E scores to determine if assessments were consistent and valid throughout the summer. Hydrology varied widely among the streams, with several streams drying between sampling events. IBIs suggested good ecological health at the beginning of the study, but declined sharply at some sites. Multivariate ordination suggested that, despite differences among sites, changes in community structure were similar, with shifts from Ephemeroptera, Plecoptera, and Trichoptera to Coleoptera and more tolerant organisms. Site revisits revealed a surprising level of variability, as 2 of the 3 revisited sites had perennial or near-perennial flow in the second year of sampling. IBI scores were more consistent in streams with stable hydrographs than in those with strongly intermittent hydrographs. These results suggest that nonperennial streams can be monitored successfully, but they may require short index periods and distinct metrics from those used in perennial streams. In addition, better approaches to mapping nonperennial streams are required.

A fatigue monitoring system based on time-domain and frequency-domain analysis of pulse data

NASA Astrophysics Data System (ADS)

Shen, Jiaai

2018-04-01

Fatigue is almost a problem that everyone would face, and a psychosis that everyone hates. If we can test people's fatigue condition and remind them of the tiredness, dangers in life, for instance, traffic accidents and sudden death will be effectively reduced, people's fatigued operations will be avoided. And people can be assisted to have access to their own and others' physical condition in time to alternate work with rest. The article develops a wearable bracelet based on FFT Pulse Frequency Spectrum Analysis and IBI's standard deviation and range calculation, according to people's heart rate (BPM) and inter-beat interval (IBI) while being tired and conscious. The hardware part is based on Arduino, pulse rate sensor, and Bluetooth module, and the software part is relied on network micro database and APP. By doing sample experiment to get more accurate standard value to judge tiredness, we prove that we can judge people's fatigue condition based on heart rate (BPM) and inter-beat interval (IBI).

Effectiveness of Large-Scale Community-Based Intensive Behavioral Intervention: A Waitlist Comparison Study Exploring Outcomes and Predictors

ERIC Educational Resources Information Center

Flanagan, Helen E.; Perry, Adrienne; Freeman, Nancy L.

2012-01-01

File review data were used to explore the impact of a large-scale publicly funded Intensive Behavioral Intervention (IBI) program for young children with autism. Outcomes were compared for 61 children who received IBI and 61 individually matched children from a waitlist comparison group. In addition, predictors of better cognitive outcomes were…

Atmospheric lifetimes, infrared spectra and degradation products of a series of hydrofluoroethers

NASA Astrophysics Data System (ADS)

Cavalli, F.; Glasius, M.; Hjorth, J.; Rindone, B.; Jensen, N. R.

The rate constants of the reactions between the OH radical and a series of hydrofluoroethers (HFE) have been measured. The reaction of OH with CHF 2OCF 2OCHF 2 (1), CHF 2OCF 2CF 2OCHF 2 (2), CHF 2OCF 2CF 2OCF 2OCHF 2 (3) and CH 3OC 4F 9 (4) were investigated at 295±3 K and 740±5 Torr total pressure. The following values of the rate constants were determined for the reaction with the OH radical: k1=(2.4±0.7)×10 -15 cm 3 molecule -1 s -1, k2=(4.7±1.6)×10 -15 cm 3 molecule -1 s -1, k3=(4.6±1.6)×10 -15 cm 3 molecule -1 s -1 and k4=(7.2±1.6)×10 -15 cm 3 molecule -1 s -1. (All values are given with 2 σ uncertainties). Infrared spectra were obtained for all four HFEs in the range from 600 to 4000 cm -1 (3 to 17 μm), with the following IBI-values (integrated band intensities): IBI 1= (5.19±0.23)×10 -16 cm molecule -1 for the 978-1584 cm -1 band, IBI 2=(6.04±0.13)×10 -16 cm molecule -1 for the 930-1501 cm -1 band, IBI 3=(8.49±0.34)×10 -16 cm molecule -1 from the 963-1587 cm -1 band and IBI 4=(4.23±0.14)×10 -16 cm molecule -1 for the 845-1428 cm -1 band. Carbonyl fluoride, CF 2O, was the only fluorine-containing degradation product that was found from the Cl atom-initiated reactions of both CHF 2OCF 2OCF 2CF 2OCHF 2 and CH 3OC 4F 9, with measured product yields of 60-97% and 20-40% (based on carbon atoms), respectively. Due to the high uptake parameter of CF 2O to liquid water, its lifetime in the atmosphere is very short (with an upper limit between 15 and 30 d). It is rapidly incorporated into raindrops/aerosols, where it eventually degrades to HF and CO 2. The GWP of CF 2O is therefore negligible compared to those of CFC-11 and CFC-12.

A Prospective Multicenter Study of Leukopenia in Infants Younger Than Ninety Days With Fever Without Source.

PubMed

Gomez, Borja; Mintegi, Santiago; Benito, Javier

2016-01-01

Little is known about the value of leukopenia for assessing the risk of having a bacterial infection in young febrile infants. Infants younger than 90 days with fever without source were prospectively recruited between October 2011 and September 2013 in 19 Spanish Pediatric Emergency Departments. We analyzed the prevalence of invasive bacterial infection (IBI, positive blood or cerebrospinal fluid culture) and non-IBI (urinary tract infections and any other microbiologically confirmed bacterial infection excluding IBIs) by leukocyte count and general appearance. Among the 3401 infants recruited, 680 were diagnosed with non-IBIs (19.9%) and 107 with IBIs (3.1%). Overall, 244 infants had leukopenia (<5000 cells/mcL), 2369 a normal leukocyte count and 790 leukocytosis (>15,000 cells/mcL). Among the 3034 well-appearing patients, those with leukopenia had a lower prevalence of non-IBI [8.1% vs. 14.7%; odds ratio (OR) 0.51 (95% confidence interval (CI): 0.29-0.88)] and a similar prevalence of IBI [2.5% vs. 2.0%; OR, 1.20 (95% CI: 0.44-3.44)] compared with those with a normal leukocyte count. Among the 367 not-well-appearing infants, those with leukopenia had a similar prevalence of non-IBI [8.9% vs. 14.7%; OR, 0.57 (95% CI: 0.16-1.79)] and a higher prevalence of IBI [17.8% vs. 6.9%; OR, 2.90 (95% CI: 1.06-7.78)]. In the subgroup of well-appearing infants 22-90 days old without leukocyturia according to urine dipstick results, prevalence of both non-IBIs and IBIs was similar in patients with leukopenia and those with a normal leukocyte count. Leukopenia in well-appearing young febrile infants should not be considered a risk factor for having a bacterial infection.

Spatial inventory integrating raster databases and point sample data. [Geographic Information System for timber inventory

NASA Technical Reports Server (NTRS)

Strahler, A. H.; Woodcock, C. E.; Logan, T. L.

1983-01-01

A timber inventory of the Eldorado National Forest, located in east-central California, provides an example of the use of a Geographic Information System (GIS) to stratify large areas of land for sampling and the collection of statistical data. The raster-based GIS format of the VICAR/IBIS software system allows simple and rapid tabulation of areas, and facilitates the selection of random locations for ground sampling. Algorithms that simplify the complex spatial pattern of raster-based information, and convert raster format data to strings of coordinate vectors, provide a link to conventional vector-based geographic information systems.

The cost-effectiveness of expanding intensive behavioural intervention to all autistic children in Ontario: in the past year, several court cases have been brought against provincial governments to increase funding for Intensive Behavioural Intervention (IBI). This economic evaluation examines the costs and consequences of expanding an IBI program.

PubMed

Motiwala, Sanober S; Gupta, Shamali; Lilly, Meredith B; Ungar, Wendy J; Coyte, Peter C

2006-01-01

Intensive Behavioural Intervention (IBI) describes behavioural therapies provided to autistic children to overcome intellectual and functional disabilities. The high cost of IBI has caused concern regarding access, and recently, several court cases have been brought against provincial governments to increase funding for this intervention. This economic evaluation assessed the costs and consequences of expanding an IBI program from current coverage for one-third of children to all autistic children aged two to five in Ontario, Canada. Data on the hours and costs of IBI, and costs of educational and respite services, were obtained from the government. Data on program efficacy were obtained from the literature. These data were modelled to determine the incremental cost savings and gains in dependency-free life years. Total savings from expansion of the current program were $45,133,011 in 2003 Canadian dollars. Under our model parameters, expansion of IBI to all eligible children represents a cost-saving policy whereby total costs of care for autistic individuals are lower and gains in dependency-free life years are higher. Sensitivity analyses carried out to address uncertainty and lack of good evidence for IBI efficacy and appropriate discount rates yielded mixed results: expansion was not cost saving with discount rates of 5% or higher and with lower IBI efficacy beyond a certain threshold. Further research on the efficacy of IBI is recommended.

IGR J16318-4848: 7 Years of INTEGRAL Observations

NASA Technical Reports Server (NTRS)

Barragan, Laura; Wilms, Joern; kreykenbohm, Ingo; Hanke, manfred; Fuerst, Felix; Pottschmidt, Katja; Rothschild, Richard

2011-01-01

Since the discovery of IGR 116318-4848 in 2003 January, INTEGRAL has accumulated more than 5.8 Ms in IBIS/ISGRI. We present the first extensive analysis of the archival INTEGRAL data (IBIS/ISGRI, and JEM-X when available) for this source, together with the observations carried out by XMM-Newton (twice in 2003, and twice in 2004) and Suzaku (2006). The source is very variable in the long-term, with periods of low activity, where the source is almost not detected, and flares with a luminosity approximately 10 times greater than its average value (5.4 cts/s). IGR 116318-4848 is a HMXB containing a sgB[e] star and a compact object (most probably a neutron star) deeply embedded in the stellar wind of the mass donor. The variability of the source (also in the short-term) can be ascribed to the wind of the optical star being very clumpy. We study the variation of the spectral parameters in time scales of INTEGRAL revolutions. The photoelectric absorption is, with NH around 10(exp 24)/ square cm, unusually high. During brighter phases the strong K-alpha iron line known from XMM-Newton and Suzaku observations is also detectable with the JEM-X instrument.

Development of a socio-ecological environmental justice model for watershed-based management

NASA Astrophysics Data System (ADS)

Sanchez, Georgina M.; Nejadhashemi, A. Pouyan; Zhang, Zhen; Woznicki, Sean A.; Habron, Geoffrey; Marquart-Pyatt, Sandra; Shortridge, Ashton

2014-10-01

The dynamics and relationships between society and nature are complex and difficult to predict. Anthropogenic activities affect the ecological integrity of our natural resources, specifically our streams. Further, it is well-established that the costs of these activities are born unequally by different human communities. This study considered the utility of integrating stream health metrics, based on stream health indicators, with socio-economic measures of communities, to better characterize these effects. This study used a spatial multi-factor model and bivariate mapping to produce a novel assessment for watershed management, identification of vulnerable areas, and allocation of resources. The study area is the Saginaw River watershed located in Michigan. In-stream hydrological and water quality data were used to predict fish and macroinvertebrate measures of stream health. These measures include the Index of Biological Integrity (IBI), Hilsenhoff Biotic Index (HBI), Family IBI, and total number of Ephemeroptera, Plecoptera, and Trichoptera (EPT) taxa. Stream health indicators were then compared to spatially coincident socio-economic data, obtained from the United States Census Bureau (2010), including race, income, education, housing, and population size. Statistical analysis including spatial regression and cluster analysis were used to examine the correlation between vulnerable human populations and environmental conditions. Overall, limited correlation was observed between the socio-economic data and ecological measures of stream health, with the highest being a negative correlation of 0.18 between HBI and the social parameter household size. Clustering was observed in the datasets with urban areas representing a second order clustering effect over the watershed. Regions with the worst stream health and most vulnerable social populations were most commonly located nearby or down-stream to highly populated areas and agricultural lands.

Automatic burst detection for the EEG of the preterm infant.

PubMed

Jennekens, Ward; Ruijs, Loes S; Lommen, Charlotte M L; Niemarkt, Hendrik J; Pasman, Jaco W; van Kranen-Mastenbroek, Vivianne H J M; Wijn, Pieter F F; van Pul, Carola; Andriessen, Peter

2011-10-01

To aid with prognosis and stratification of clinical treatment for preterm infants, a method for automated detection of bursts, interburst-intervals (IBIs) and continuous patterns in the electroencephalogram (EEG) is developed. Results are evaluated for preterm infants with normal neurological follow-up at 2 years. The detection algorithm (MATLAB®) for burst, IBI and continuous pattern is based on selection by amplitude, time span, number of channels and numbers of active electrodes. Annotations of two neurophysiologists were used to determine threshold values. The training set consisted of EEG recordings of four preterm infants with postmenstrual age (PMA, gestational age + postnatal age) of 29-34 weeks. Optimal threshold values were based on overall highest sensitivity. For evaluation, both observers verified detections in an independent dataset of four EEG recordings with comparable PMA. Algorithm performance was assessed by calculation of sensitivity and positive predictive value. The results of algorithm evaluation are as follows: sensitivity values of 90% ± 6%, 80% ± 9% and 97% ± 5% for burst, IBI and continuous patterns, respectively. Corresponding positive predictive values were 88% ± 8%, 96% ± 3% and 85% ± 15%, respectively. In conclusion, the algorithm showed high sensitivity and positive predictive values for bursts, IBIs and continuous patterns in preterm EEG. Computer-assisted analysis of EEG may allow objective and reproducible analysis for clinical treatment.

Information processing of earth resources data

NASA Technical Reports Server (NTRS)

Zobrist, A. L.; Bryant, N. A.

1982-01-01

Current trends in the use of remotely sensed data include integration of multiple data sources of various formats and use of complex models. These trends have placed a strain on information processing systems because an enormous number of capabilities are needed to perform a single application. A solution to this problem is to create a general set of capabilities which can perform a wide variety of applications. General capabilities for the Image-Based Information System (IBIS) are outlined in this report. They are then cross-referenced for a set of applications performed at JPL.

When A Standard Candle Flickers

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, Michael L.; Case, Gary L.; Baumgartner, Wayne H.; Beklen Elif; Bhat, P. Narayana; Briggs, Michael S.; Camero-Arranz, Ascension; Chaplin, Vandiver; Connaughton, Valerie;

Stream Health Sensitivity to Landscape Changes due to Bioenergy Crops Expansion

NASA Astrophysics Data System (ADS)

Nejadhashemi, A.; Einheuser, M. D.; Woznicki, S. A.

2012-12-01

Global demand for bioenergy has increased due to uncertainty in oil markets, environmental concerns, and expected increases in energy consumption worldwide. To develop a sustainable biofuel production strategy, the adverse environmental impacts of bioenergy crops expansion should be understood. To study the impact of bioenergy crops expansion on stream health, the adaptive neural-fuzzy inference system (ANFIS) was used to predict macroinvertebrate and fish stream health measures. The Hilsenhoff Biotic Index (HBI), Family Index of Biological Integrity (Family IBI), and Number of Ephemeroptera, Plecoptera, and Trichoptera taxa (EPT taxa) were used as macroinvertebrate measures, while the Index of Biological Integrity (IBI) was used for fish. A high-resolution biophysical model built using the Soil and Water Assessment Tool was used to obtain water quantity and quality variables for input into the ANFIS stream health predictive models. Twenty unique crop rotations were developed to examine impacts of bioenergy crops expansion on stream health in the Saginaw Bay basin. Traditional intensive row crops generated more pollution than current landuse conditions, while second-generation biofuel crops associated with less intensive agricultural activities resulted in water quality improvement. All three macroinvertebrate measures were negatively impacted during intensive row crop productions but improvement was predicted when producing perennial crops. However, the expansion of native grass, switchgrass, and miscanthus production resulted in reduced IBI relative to first generation row crops. This study demonstrates that ecosystem complexity requires examination of multiple stream health measures to avoid potential adverse impacts of landuse change on stream health.

Electrofishing distance needed to estimate consistent Index of Biotic Integrity (IBI) scores in raftable Oregon rivers

EPA Science Inventory

An important issue surrounding assessment of riverine fish assemblages is the minimum amount of sampling distance needed to adequately determine biotic condition. Determining adequate sampling distance is important because sampling distance affects estimates of fish assemblage c...

VizieR Online Data Catalog: Update of INTEGRAL/IBIS AGN catalogue (Malizia+, 2016)

NASA Astrophysics Data System (ADS)

Malizia, A.; Landi, R.; Molina, M.; Bassani, L.; Bazzano, A.; Bird, A. J.; Ubertini, P.

2017-09-01

In this paper we present the X-ray and optical follow-up work on 107 new AGN recently detected by INTEGRAL. Luckily, we have been able to obtain full X-ray coverage of the entire sample making use of data from Swift/XRT, Newton-XMM and NuSTAR archives or through Swift/XRT follow up observations triggered by us. (2 data files).

Trafficking of the signature protein of intra-erythrocytic Plasmodium berghei-induced structures, IBIS1, to P. falciparum Maurer's clefts.

PubMed

Petersen, Wiebke; Matuschewski, Kai; Ingmundson, Alyssa

2015-01-01

Remodeling of the host red blood cell by Plasmodium falciparum is well established and crucial for infection and parasite virulence. Host cell modifications are not exclusive to human Plasmodium parasites and also occur in hepatocytes and erythrocytes infected with murine Plasmodium parasites. The recently described intra-erythrocytic P. berghei-induced structures (IBIS) share similarities to P. falciparum Maurer's clefts. It is shown here that a potential candidate IBIS1 homologue in P. falciparum, PfHYP12 (PF3D7_1301400), is partially exported into the erythrocyte cytoplasm. To analyze a potential similarity between IBIS and Maurer's clefts we expressed the signature protein of IBIS in P. falciparum parasites. Visualization of the tagged protein revealed that PbIBIS1 can be exported by P. falciparum and localizes to Maurer's clefts in P. falciparum-infected erythrocytes, which indicates that IBIS and Maurer's clefts may be evolutionarily conserved parasite-induced structures in infected erythrocytes. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Impact of an acceptance facilitating intervention on diabetes patients' acceptance of Internet-based interventions for depression: a randomized controlled trial.

PubMed

Baumeister, H; Nowoczin, L; Lin, J; Seifferth, H; Seufert, J; Laubner, K; Ebert, D D

2014-07-01

To (1) determine diabetes patients' acceptance of Internet-based interventions (IBIs) for depression, to (2) examine the effectiveness of an acceptance facilitating intervention (AFI) and to (3) explore subgroup specific effects. 141 diabetes patients from two inpatient rehabilitation units and one outpatient clinic in Germany were randomly allocated to an intervention (IG) and a no-intervention control group (CG). The IG received an AFI consisting of a personal information session before filling-out a questionnaire on patients' acceptance of IBIs, predictors of acceptance (performance expectancy, effort expectancy, social influence, facilitating conditions, and Internet anxiety) as well as sociodemographic, depression-related and diabetes-related variables. The CG filled out the questionnaire immediately. Patients' acceptance of IBIs was measured with a four-item scale (sum-score ranging from 4 to 20). The CG showed a low (50.7%) to medium (40.8%) acceptance with only 8.5% of all diabetes patients reporting a high acceptance of IBIs for depression. The AFI had no significant effect on acceptance (IG: M=10.55, SD=4.69, n=70; KG: M=9.65, SD=4.27, n=71; d=0.20 [95%-CI: -0.13;0.53]) and the predictors of acceptance. Yet, subgroup analyses yielded a trend for depressed, diabetes-related distressed, female and younger (<59) participants and for those who do not frequently use the Internet to profit from the AFI. Diabetes patients show a rather low acceptance toward IBIs for depression. Findings indicate that the AFI is likely to be effective in the subgroup of depressed, diabetes-related distressed, female or younger diabetes patients, but not in the whole target population. Hence, AFIs might need to be tailored to the specific needs of subpopulations. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Assessment of fish assemblages and minimum sampling effort required to determine botic integrity of large rivers in southern Idaho, 2002

USGS Publications Warehouse

Maret, Terry R.; Ott, D.S.

2004-01-01

width was determined to be sufficient for collecting an adequate number of fish to estimate species richness and evaluate biotic integrity. At most sites, about 250 fish were needed to effectively represent 95 percent of the species present. Fifty-three percent of the sites assessed, using an IBI developed specifically for large Idaho rivers, received scores of less than 50, indicating poor biotic integrity.

Predicting Summer Dryness Under a Warmer Climate: Modeling Land Surface Processes in the Midwestern United States

NASA Astrophysics Data System (ADS)

Winter, J. M.; Eltahir, E. A.

2009-12-01

One of the most significant impacts of climate change is the potential alteration of local hydrologic cycles over agriculturally productive areas. As the world’s food supply continues to be taxed by its burgeoning population, a greater percentage of arable land will need to be utilized and land currently producing food must become more efficient. This study seeks to quantify the effects of climate change on soil moisture in the American Midwest. A series of 24-year numerical experiments were conducted to assess the ability of Regional Climate Model Version 3 coupled to Integrated Biosphere Simulator (RegCM3-IBIS) and Biosphere-Atmosphere Transfer Scheme 1e (RegCM3-BATS1e) to simulate the observed hydroclimatology of the midwestern United States. Model results were evaluated using NASA Surface Radiation Budget, NASA Earth Radiation Budget Experiment, Illinois State Water Survey, Climate Research Unit Time Series 2.1, Global Soil Moisture Data Bank, and regional-scale estimations of evapotranspiration. The response of RegCM3-IBIS and RegCM3-BATS1e to a surrogate climate change scenario, a warming of 3oC at the boundaries and doubling of CO2, was explored. Precipitation increased significantly during the spring and summer in both RegCM3-IBIS and RegCM3-BATS1e, leading to additional runoff. In contrast, enhancement of evapotranspiration and shortwave radiation were modest. Soil moisture remained relatively unchanged in RegCM3-IBIS, while RegCM3-BATS1e exhibited some fall and winter wetting.

INTEGRAL detection of hard X-ray emission from NGC 1566

NASA Astrophysics Data System (ADS)

Ducci, L.; Siegert, T.; Diehl, R.; Sanchez-Fernandez, C.; Ferrigno, C.; Savchenko, V.; Bozzo, E.

2018-06-01

During the observations of the Reticulum II region carried out from 2018 June 12 to 2018 June 19 (total exposure time of 208 ks), the IBIS/ISGRI instrument on board INTEGRAL detected significant hard X-ray emission from a source with coordinates: RA: 4:19:49 Dec: -54:56:28, with 3.5 arcmin 90% confinement radius and spatially coincident with the Seyfert galaxy NGC 1566.

FISH AND AMPHIBIAN TOLERANCE VALUES AND AN ASSEMBLAGE TOLERANCE INDEX FOR STEAMS AND RIVERS IN THE WESTERN USA

EPA Science Inventory

Aquatic species' tolerances to overall human disturbance are key components of biological assessments of aquatic ecosystems. These tolerance classifications enable development of metrics for use in multimetric indexes, such as the index of biotic integrity (IBI). Usually, species...

Application of modified VICAR/IBIS GIS to analysis of July 1991 Flevoland AIRSAR data

NASA Technical Reports Server (NTRS)

Norikane, L.; Broek, B.; Freeman, A.

1992-01-01

Three overflights of the Flevoland calibration/agricultural site were made by the JPL Airborne Synthetic Aperture Radar (AIRSAR) on 3, 12, and 28 July 1991 as part of MAC-Europe '92. A polygon map was generated at TNO-FEL which overlayed the slant range projected July 3 data set. Each polygon was identified by a sequence of points and a crop label. The polygon map was composed of 452 uniquely identified polygons and 15 different crop types. Analysis of the data was done using our modified Video Image Communication and Retrieval/Image Based Information System Geographic Information System (VICAR/IBIS GIS). This GIS is an extension of the VICAR/IBIS GIS first developed by Bryant in the 1970's which is itself an extension of the VICAR image processing system also developed at JPL.

BIOTIC INTEGRITY OF STREAMS IN THE SAVANNAH RIVER SITE INTEGRATOR OPERABLE UNITS, 1996 TO 2003

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paller, M; Susan Dyer, S

2004-11-08

The Savannah River Site (SRS) has been divided into six Integrator Operable Units (IOUs) that correspond to the watersheds of the five major streams on the SRS (Upper Three Runs, Fourmile Branch, Pen Branch, Steel Creek, and Lower Three Runs) and the portions of the Savannah River and Savannah River Swamp associated with the SRS. The streams are the primary integrators within each IOU because they potentially receive, through surface or subsurface drainage, soluble contaminants from all waste sites within their watersheds. If these contaminants reach biologically significant levels, they would be expected to effect the numbers, types, and healthmore » of stream organisms. In this study, biological sampling was conducted within each IOU as a measure of the cumulative ecological effects of the waste sites within the IOUs. The use of information from biological sampling to assess environmental quality is often termed bioassessment. The IOU bioassessment program included 38 sites in SRS streams and nine sites in the Savannah River. Sampling was conducted in 1996 to 1998, 2000, and 2003. Four bioassessment methods were used to evaluate ecological conditions in the IOU streams: the Index of Biotic Integrity, the Fish Health Assessment Index, measurement of fish tissue contaminant levels, and two benthic macroinvertebrate indices. The Index of Biotic Integrity (IBI) is an EPA supported method based on comparison of ecologically important and sensitive fish assemblage variables between potentially disturbed and reference (i.e., undisturbed) sites. It is designed to assess the ability of a stream to support a self-sustaining biological community and ecological processes typical of undisturbed, natural conditions. Since many types of contaminants can bioaccumulate, fish tissue contaminant data were used to determine the types of chemicals fish were exposed to and their relative magnitudes among IOUs. The Fish Health Assessment Index (HAI) is an EPA supported method for assessing the health and condition of individual fish based on dissection and internal examination. It helped to determine whether contaminant concentrations were high enough to adversely affect the health of individual fish. The benthic macroinvertebrate multimetric index (HDMI), used in 1997 to 2000, is a method for assessing stream health based on macroinvertebrate data collected with Hester-Dendy artificial substrates. In 2003 it was replaced with the Multiple Habitat Sampling protocol, a SCDHEC method for collecting and analyzing benthic macroinvertebrate data from natural substrate. These two macroinvertebrate based methods were used in conjunction with the fish based IBI to provide a more comprehensive assessment of ecological conditions. Lastly, habitat data were collected from each stream to assist in determining whether ecological integrity was compromised by physical factors (e.g., erosion) or chemical factors (e.g., discharge of toxic materials). Fish from many SRS streams exhibited evidence of contamination as a result of current or former SRS operations. The most prevalent radiological contaminants were cesium-137 (highest in fish from Lower Three Runs followed by Steel Creek and Fourmile Branch), tritium (highest in fish from Fourmile Branch followed by Pen Branch, and the Savannah River swamp), and strontium (highest in fish from Fourmile Branch followed by Pen Branch). Radiological contaminants were also found in fish collected from the Savannah River near the mouths of contaminated SRS streams; however, contaminant levels were substantially lower than in fish from the streams themselves. Mercury levels were moderately elevated in fish from some streams, particularly Lower Three Runs, and in fish from the Savannah River. Despite the occurrence of contaminants, most SRS streams exhibited comparatively high biotic integrity (based on IBI, HDMI, and MHSP scores) and minimal levels of pathology among individual fish (e.g., presence of tumors or extreme thinness), indicating that contaminant levels were generally insufficient to cause significant ecological degradation.« less

Status of the White-faced Ibis: Breeding colony dynamics of the Great Basin population, 1985-1997

USGS Publications Warehouse

Earnst, S.L.; Neel, L.; Ivey, G.L.; Zimmerman, T.

1998-01-01

The status of the White-faced Ibis (Plegadis chihi) in the Great Basin is of concern because of its small population size and the limited and dynamic nature of its breeding habitat. We analyzed existing annual survey data for the White-faced Ibis breeding in the Great Basin and surrounding area for 1985-1997. Methods varied among colonies and included flight-line counts and fixed-wing aircraft and helicopter surveys. The number of White-faced Ibis breeding pairs in the Great Basin area has nearly tripled since 1985, despite years of severe flooding and drought at major breeding areas. This growth is reflected in both peripheral (i.e., Oregon, California, Idaho) and core (i.e., Nevada and Utah) components of the population. Our data on colony dynamics in Oregon and Nevada illustrate the ability of the highly nomadic White-faced Ibis to compensate for poor conditions at traditional colony sites by moving among colonies and rapidly colonizing newly available wetlands. We suggest that the White-faced Ibis would benefit from a landscape mosaic of well-distributed peripheral wetlands and persistent colony sites. The nomadic nature of the White-faced Ibis and the dynamic nature of their breeding habitat necessitates that wetland management decisions and population monitoring be conducted in a regional context.

Status of the white-faced ibis: Breeding colony dynamics of the Great Basin population, 1985-1997

USGS Publications Warehouse

Earnst, Susan L.; Neel, L.; Ivey, G.L.; Zimmerman, T.

1998-01-01

The status of the White-faced Ibis (Plegadis chihi) in the Great Basin is of concern because of its small population size and the limited and dynamic nature of its breeding habitat. We analyzed existing annual survey data for the White-faced Ibis breeding in the Great Basin and surrounding area for 1985-1997. Methods varied among colonies and included flight-line counts and fixed-wing aircraft and helicopter surveys. The number of White-faced Ibis breeding pairs in the Great Basin area has nearly tripled since 1985, despite years of severe flooding and drought at major breeding areas. This growth is reflected in both peripheral (i.e., Oregon, California, Idaho) and core (i.e., Nevada and Utah) components of the population. Our data on colony dynamics in Oregon and Nevada illustrate the ability of the highly nomadic White-faced Ibis to compensate for poor conditions at traditional colony sites by moving among colonies and rapidly colonizing newly available wetlands. We suggest that the White-faced Ibis would benefit from a landscape mosaic of well-distributed peripheral wetlands and persistent colony sites. The nomadic nature of the White-faced Ibis and the dynamic nature of their breeding habitat necessitates that wetland management decisions and population monitoring be conducted in a regional context.

INTEGRAL observation of SWIFT J1756.9-2508 in outburst

NASA Astrophysics Data System (ADS)

Mazzola, S.; Bozzo, E.; Kuulkers, E.; Ferrigno, C.; Savchenko, V.; Ducci, L.

2018-04-01

Following the discovery of a new outburst from the accreting millisecond X-ray pulsar SWIFT J1756.9-2508 (ATel #11497, #11502, #11505), a dedicated target of opportunity observation with INTEGRAL was carried out from 2018 April 1 at 08:30 to 23:15 (UTC; total exposure time 85 ks). The source was detected in the 20-40 keV IBIS/ISGRI mosaic at a significance level of 20 sigma.

Search for HRV-parameters that detect a sympathetic shift in heart failure patients on β-blocker treatment.

PubMed

Zhang, Yanru; de Peuter, Olav R; Kamphuisen, Pieter W; Karemaker, John M

2013-01-01

A sympathetic shift in heart rate variability (HRV) from high to lower frequencies may be an early signal of deterioration in a monitored patient. Most chronic heart failure (CHF) patients receive β-blockers. This tends to obscure HRV observation by increasing the fast variations. We tested which HRV parameters would still detect the change into a sympathetic state. β-blocker (Carvedilol®) treated CHF patients underwent a protocol of 10 min supine rest, followed by 10 min active standing. CHF patients (NYHA Class II-IV) n = 15, 10m/5f, mean age 58.4 years (47-72); healthy controls n = 29, 18m/11f, mean age 62.9 years (49-78). Interbeat intervals (IBI) were extracted from the finger blood pressure wave (Nexfin®). Both linear and non-linear HRV analyses were applied that (1) might be able to differentiate patients from healthy controls under resting conditions and (2) detect the change into a sympathetic state in the present short recordings. Linear: mean-IBI, SD-IBI, root mean square of successive differences (rMSSD), pIBI-50 (the proportion of intervals that differs by more than 50 ms from the previous), LF, HF, and LF/HF ratio. Non-linear: Sample entropy (SampEn), Multiscale entropy (MSE), and derived: Multiscale variance (MSV) and Multiscale rMSSD (MSD). In the supine resting situation patients differed from controls by having higher HF and, consequently, lower LF/HF. In addition their longer range (τ = 6-10) MSE was lower as well. The sympathetic shift was, in controls, detected by mean-IBI, rMSSD, pIBI-50, and LF/HF, all going down; in CHF by mean-IBI, rMSSD, pIBI-50, and MSD (τ = 6-10) going down. MSD6-10 introduced here works as a band-pass filter favoring frequencies from 0.02 to 0.1 Hz. In β-blocker treated CHF patients, traditional time domain analysis (mean-IBI, rMSSD, pIBI-50) and MSD6-10 provide the most useful information to detect a condition change.

The cultivable autochthonous microbiota of the critically endangered Northern bald ibis (Geronticus eremita)

PubMed Central

Loncaric, Igor; Tichy, Alexander; Fritz, Johannes; Scope, Alexandra

2018-01-01

The critically endangered Northern bald ibis (Geronticus eremita) is a migratory bird that became extinct in Europe centuries ago. Since 2014, the Northern bald ibis is subject to an intensive rehabilitation and conservation regime aiming to reintroduce the bird in its original distribution range in Central Europe and concurrently to maintain bird health and increase population size. Hitherto, virtually nothing is known about the microbial communities associated with the ibis species; an information pivotal for the veterinary management of these birds. Hence, the present study was conducted to provide a baseline description of the cultivable microbiota residing in the Northern bald ibis. Samples derived from the choana, trachea, crop and cloaca were examined employing a culturomic approach in order to identify microbes at each sampling site and to compare their frequency among age classes, seasonal appearances and rearing types. In total, 94 microbial species including 14 potentially new bacterial taxa were cultivated from the Northern bald ibis with 36, 58 and 59 bacterial species isolated from the choana, crop and cloaca, respectively. The microbiota of the Northern bald ibis was dominated by members of the phylum Firmicutes, followed by Proteobacteria, Actinobacteria, Bacteroidetes and Fusobacteria, altogether phylotypes commonly observed within avian gut environments. Differences in relative abundances of various microbial taxa were evident among sample types indicating mucosa-specific colonisation properties and tissue tropism. Besides, results of the present study indicate that the composition of microbiota was also affected by age, season (environment) and rearing type. While the prevalence of traditional pathogenic microbial species was extremely low, several opportunists including Clostridium perfringens toxotype A were frequently present in samples indicating that the Northern bald ibis may represent an important animal reservoir for these pathogens. In summary, the presented study provides a first inventory of the cultivable microbiota residing in the critically endangered Northern bald ibis and represents a first step in a wider investigation of the ibis microbiome with the ultimate goal to contribute to the management and survival of this critically endangered bird. PMID:29617453

Are Two Systemic Fish Assemblage Sampling Programmes on the Upper Mississippi River Telling Us the Same Thing?

EPA Science Inventory

We applied an Index of Biotic Integrity (IBI) used on the Upper Mississippi River (UMR) to compare data from three sampling programs. Ability to use multiple sampling programs could greatly extend spatial and temporal coverage of river assessment and monitoring efforts. We an...

[Estimation of individual breast cancer risk: relevance and limits of risk estimation models].

PubMed

De Pauw, A; Stoppa-Lyonnet, D; Andrieu, N; Asselain, B

2009-10-01

Several risk estimation models for breast or ovarian cancers have been developed these last decades. All these models take into account the family history, with different levels of sophistication. Gail model was developed in 1989 taking into account the family history (0, 1 or > or = 2 affected relatives) and several environmental factors. In 1990, Claus model was the first to integrate explicit assumptions about genetic effects, assuming a single gene dominantly inherited occurring with a low frequency in the population. BRCAPRO model, posterior to the identification of BRCA1 and BRCA2, assumes a restricted transmission with only these two dominantly inherited genes. BOADICEA model adds the effect of a polygenic component to the effect of BRCA1 and BRCA2 to explain the residual clustering of breast cancer. At last, IBIS model assumes a third dominantly inherited gene to explain this residual clustering. Moreover, this model incorporates environmental factors. We applied the Claus, BRCAPRO, BOADICEA and IBIS models to four clinical situations, corresponding to more or less heavy family histories, in order to study the consistency of the risk estimates. The three more recent models (BRCAPRO, BOADICEA and IBIS) gave the closer estimations. These estimates could be useful in clinical practice in front of complex analysis of breast and/or ovarian cancers family history.

Sensori-motor synchronisation variability decreases as the number of metrical levels in the stimulus signal increases.

PubMed

Madison, Guy

2014-03-01

Timing performance becomes less precise for longer intervals, which makes it difficult to achieve simultaneity in synchronisation with a rhythm. The metrical structure of music, characterised by hierarchical levels of binary or ternary subdivisions of time, may function to increase precision by providing additional timing information when the subdivisions are explicit. This hypothesis was tested by comparing synchronisation performance across different numbers of metrical levels conveyed by loudness of sounds, such that the slowest level was loudest and the fastest was softest. Fifteen participants moved their hand with one of 9 inter-beat intervals (IBIs) ranging from 524 to 3,125 ms in 4 metrical level (ML) conditions ranging from 1 (one movement for each sound) to 4 (one movement for every 8th sound). The lowest relative variability (SD/IBI<1.5%) was obtained for the 3 longest IBIs (1600-3,125 ms) and MLs 3-4, significantly less than the smallest value (4-5% at 524-1024 ms) for any ML 1 condition in which all sounds are identical. Asynchronies were also more negative with higher ML. In conclusion, metrical subdivision provides information that facilitates temporal performance, which suggests an underlying neural multi-level mechanism capable of integrating information across levels. © 2013.

Regularity of beating of small clusters of embryonic chick ventricular heart-cells: experiment vs. stochastic single-channel population model

NASA Astrophysics Data System (ADS)

Krogh-Madsen, Trine; Kold Taylor, Louise; Skriver, Anne D.; Schaffer, Peter; Guevara, Michael R.

2017-09-01

The transmembrane potential is recorded from small isopotential clusters of 2-4 embryonic chick ventricular cells spontaneously generating action potentials. We analyze the cycle-to-cycle fluctuations in the time between successive action potentials (the interbeat interval or IBI). We also convert an existing model of electrical activity in the cluster, which is formulated as a Hodgkin-Huxley-like deterministic system of nonlinear ordinary differential equations describing five individual ionic currents, into a stochastic model consisting of a population of ˜20 000 independently and randomly gating ionic channels, with the randomness being set by a real physical stochastic process (radio static). This stochastic model, implemented using the Clay-DeFelice algorithm, reproduces the fluctuations seen experimentally: e.g., the coefficient of variation (standard deviation/mean) of IBI is 4.3% in the model vs. the 3.9% average value of the 17 clusters studied. The model also replicates all but one of several other quantitative measures of the experimental results, including the power spectrum and correlation integral of the voltage, as well as the histogram, Poincaré plot, serial correlation coefficients, power spectrum, detrended fluctuation analysis, approximate entropy, and sample entropy of IBI. The channel noise from one particular ionic current (IKs), which has channel kinetics that are relatively slow compared to that of the other currents, makes the major contribution to the fluctuations in IBI. Reproduction of the experimental coefficient of variation of IBI by adding a Gaussian white noise-current into the deterministic model necessitates using an unrealistically high noise-current amplitude. Indeed, a major implication of the modelling results is that, given the wide range of time-scales over which the various species of channels open and close, only a cell-specific stochastic model that is formulated taking into consideration the widely different ranges in the frequency content of the channel-noise produced by the opening and closing of several different types of channels will be able to reproduce precisely the various effects due to membrane noise seen in a particular electrophysiological preparation.

Effects of urbanization on benthic macroinvertebrate assemblages in contrasting environmental settings: Boston, Massachusetts; Birmingham, Alabama; and Salt Lake City, Utah

USGS Publications Warehouse

Cuffney, T.F.; Zappia, H.; Giddings, E.M.P.; Coles, J.F.

2005-01-01

Responses of invertebrate assemblages along gradients of urban intensity were examined in three metropolitan areas with contrasting climates and topography (Boston, Massachusetts; Birmingham, Alabama; Salt Lake City, Utah). Urban gradients were defined using an urban intensity index (UII) derived from basin-scale population, infrastructure, land-use, land-cover, and socioeconomic characteristics. Responses based on assemblage metrics, indices of biotic integrity (B-IBI), and ordinations were readily detected in all three urban areas and many responses could be accurately predicted simply using regional UIIs. Responses to UII were linear and did not indicate any initial resistance to urbanization. Richness metrics were better indicators of urbanization than were density metrics. Metrics that were good indicators were specific to each study except for a richness-based tolerance metric (TOLr) and one B-IBI. Tolerances to urbanization were derived for 205 taxa. These tolerances differed among studies and with published tolerance values, but provided similar characterizations of site conditions. Basin-scale land-use changes were the most important variables for explaining invertebrate responses to urbanization. Some chemical and instream physical habitat variables were important in individual studies, but not among studies. Optimizing the study design to detect basin-scale effects may have reduced the ability to detect local-scale effects. ?? 2005 by the American Fisheries Society.

IGR J12319-0749: Evidence for Another Extreme Blazar Found with INTEGRAL

NASA Technical Reports Server (NTRS)

Bassani, L.; Landi, R.; Marshall, F. E.; Malizia, A.; Bazzano, A.; Bird, A. J.; Gehrels, N.; Ubertini, P.; Masetti, N.

2012-01-01

We report on the identification of a new soft gamma-ray source, IGR J12319-0749, detected with the IBIS imager on board the INTEGRAL satellite. The source, which has an observed 20-100 keV flux of approx 8.3 × 10(exp -12) erg/sq. cm/ s, is spatially coincident with an active galactic nucleus (AGN) at redshift z = 3.12. The broad-band continuum, obtained by combining XRT and IBIS data, is flat (Gamma = 1.3) with evidence for a spectral break around 25 keV (100 keV in the source restframe). X-ray observations indicate flux variability, which is also supported by a comparison with a previous ROSAT measurement. IGR J12319-0749 is also a radio-emitting object likely characterised by a flat spectrum and high radio loudness; optically it is a broad-line emitting object with a massive black hole (2.8 × 10(exp 9) solar masses) at its centre. The source spectral energy distribution is similar to another high-redshift blazar, 225155+2217 at z = 3.668: both objects are bright, with a high accretion disk luminosity and a Compton peak located in the hard X-ray/soft gamma-ray band. IGR J12319-0749 is likely the second-most distant blazar detected so far by INTEGRAL.

IGR J12319-0749: Evidence for Another Extreme Blazar Found with INTEGRAL

NASA Technical Reports Server (NTRS)

Bassani, L.; Landi, R.; Marshall, F. E.; Malizia, A.; Bazzano, A.; Bird, A. J.; Gehrels, N.; Ubertini, P.; Masetti, N.

2012-01-01

We report on the identification of a new soft gamma-ray source, IGR J12319 C0749, detected with the IBIS imager on board the INTEGRAL satellite. The source, which has an observed 20 C100 keV flux of 8.3 10.12 erg cm.2 s.1, is spatially coincident with an AGN at redshift z = 3.12. The broad-band continuum, obtained by combining XRT and IBIS data, is flat ( =1.3) with evidence for a spectral break around 25 keV (100 keV in the source rest frame). X-ray observations indicate flux variability which is further supported by a comparison with a previous ROSAT measurement. IGR J12319 C0749 is also a radio emitting object likely characterized by a flat spectrum and high radio loudness; optically it is a broad-line emitting object with a massive black hole (2.8 109 solar masses) at its center. The source Spectral Energy Distribution is similar to another high redshift blazar, 225155+2217 at z = 3.668: both objects are bright, with a large accretion disk luminosity and a Compton peak located in the hard X-ray/soft gamma-ray band. IGR J12319 C0749 is likely the second most distant blazar detected so far by INTEGRAL.

Conceptual assessment framework for forested wetland restoration: the Pen Branch experience

Treesearch

Randy K. Kolka; E. A. Nelson; C. C. Trettin

2000-01-01

Development of an assessment framework and associated indicators that can be used to evaluate the effectiveness of a wetland restoration is critical to demonstrating the sustainability of restored sites. Current wetland restoration assessment techniques such as the index of biotic integrity (IBI) or the hydrogeomorphic method (HGM) generally focus on either the biotic...

Assessing relationships between human land uses and the decline of native mussels, fish, and macroinvertebrates in the Clinch and Powell River watershed, USA.

PubMed

Diamond, Jerome M; Bressler, David W; Serveiss, Victor B

2002-06-01

The free-flowing Clinch and Powell watershed in Virginia, USA, harbors a high number of endemic mussel and fish species but they are declining or going extinct at an alarming rate. To prioritize resource management strategies with respect to these fauna, a geographical information system was developed and various statistical approaches were used to relate human land uses with available fish, macroinvertebrate, and native mussel assemblage data. Both the Ephemeroptera, Plecoptera, Trichoptera (EPT) family-level index, and the fish index of biotic integrity (IBI) were lowest in a subwatershed with the greatest coal mining activity (analysis of variance [ANOVA], p < 0.05). Limited analyses in two other subwatersheds suggested that urban and agricultural land uses within a specified riparian corridor were more related to mussel species richness and fish IBI than land uses in entire catchments. Based on land uses within a riparian corridor of 200 m x 2 km for each biological site in the watershed, fish IBI was inversely related to percent cropland and urban area and positively related to pasture area (stepwise multiple regression, R2 = 0.55, p < 0.05). Sites less than 2 km downstream of urban areas, major highways, or coal mine activities had a significantly lower mean IBI value than those more than 2 km away (ANOVA, p < .05). Land use effects included poorer instream cover and higher substrate embeddedness (t test, p < 0.05). Weaker land use relationships were observed for EPT and mussel species richness. Episodic spills of toxic materials, originating from transportation corridors, mines, and industrial facilities, also have resulted in local extirpations of native species. particularly mussels. The number of co-occurring human activities was directly related to stream elevation in the Clinch River, with more human land uses in headwater areas. Approximately 60% of known U.S. Fish and Wildlife mussel concentration sites in the watershed are located within 2 km of at least two land use sources identified as potentially stressful in our analyses. Our results indicate that a number of land uses and stressors are probably responsible for the decline in native species. However, protection of naturally vegetated riparian corridors may help mitigate some of these effects.

Using Ant Communities For Rapid Assessment Of Terrestrial Ecosystem Health

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wike, L

2005-06-01

Measurement of ecosystem health is a very important but often difficult and sometimes fractious topic for applied ecologists. It is important because it can provide information about effects of various external influences like chemical, nuclear, and physical disturbance, and invasive species. Ecosystem health is also a measure of the rate or trajectory of degradation or recovery of systems that are currently suffering impact or those where restoration or remediation have taken place. Further, ecosystem health is the single best indicator of the quality of long term environmental stewardship because it not only provides a baseline condition, but also the meansmore » for future comparison and evaluation. Ecosystem health is difficult to measure because there are a nearly infinite number of variables and uncertainty as to which suites of variables are truly indicative of ecosystem condition. It would be impossible and prohibitively expensive to measure all those variables, or even all the ones that were certain to be valid indicators. Measurement of ecosystem health can also be a fractious topic for applied ecologists because there are a myriad of opinions as to which variables are the most important, most easily measured, most robust, and so forth. What is required is an integrative means of evaluating ecosystem health. All ecosystems are dynamic and undergo change either stochastically, intrinsically, or in response to external influences. The basic assumption about change induced by exogenous antropogenic influences is that it is directional and measurable. Historically measurements of surrogate parameters have been used in an attempt to quantify these changes, for example extensive water chemistry data in aquatic systems. This was the case until the 1980's when the Index of Biotic Integrity (IBI) (Karr et al. 1986), was developed. This system collects an array of metrics and fish community data within a stream ecosystem and develops a score or rating for the relative health of the ecosystem. The IBI, though originally for Midwestern streams, has been successfully adapted to other ecoregions and taxa (macroinvertebrates, Lombard and Goldstein, 2004) and has become an important tool for scientists and regulatory agencies alike in determining health of stream ecosystems. The IBI is a specific type of a larger group of methods and procedures referred to as Rapid Bioassessment (RBA). These protocols have the advantage of directly measuring the organisms affected by system perturbations, thus providing an integrated evaluation of system health because the organisms themselves integrate all aspects of their environment and its condition. In addition to the IBI, the RBA concept has also been applied to seep wetlands (Paller et al. 2005) and terrestrial systems (O'Connell et al. 1998, Kremen et al. 1993, Rodriguez et al. 1998, Rosenberg et al. 1986). Terrestrial RBA methods have lagged somewhat behind those for aquatic systems because terrestrial systems are less distinctly defined and seem to have a less universal distribution of an all-inclusive taxon, such as fish in the IBI, upon which to base an RBA. In the last decade, primarily in Australia, extensive development of an RBA using ant communities has shown great promise. Ants have the same advantage for terrestrial RBAs that fish do for aquatic systems in that they are an essential and ubiquitous component of virtually all terrestrial ecosystems. They occupy a broad range of niches, functional groups, and trophic levels and they possess one very important characteristic that makes them ideal for RBA because, similar to the fishes, there is a wide range of tolerance to conditions within the larger taxa. Within ant communities there are certain groups, genera, or species that may be very robust and abundant under even the harshest impacts. There are also taxa that are very sensitive to disturbance and change and their presence or absence is also indicative of the local conditions. Also, as with the aquatic RBAs using macroinvertebrates, ants have a wide variety of functional foraging or feeding groups, by whose abundance or scarcity an evaluation of the system health may be made. Much of the ground work has been done for useful ant RBAs, but it has primarily been in Australia, Europe, the US desert Southwest, and South America. However, the work already done will transport well to other ecoregions and as has been done with the IBI, it could be adapted with an appropriate investment of time and resources. It would be necessary to establish taxonomic expertise, allocate the local ant fauna to functional groups, and evaluation and modification of metrics and characteristics used to develop indices in the existing methods. Successful adaptation and application of an ant RBA would provide a cost effective, useful, and robust tool for evaluating the health of terrestrial ecosystems anywhere in the region.« less

The INTEGRAL long monitoring of persistent ultra compact X-ray bursters

NASA Astrophysics Data System (ADS)

Fiocchi, M.; Bazzano, A.; Ubertini, P.; Bird, A. J.; Natalucci, L.; Sguera, V.

2008-12-01

Context: The combination of compact objects, short period variability and peculiar chemical composition of the ultra compact X-ray binaries make up a very interesting laboratory to study accretion processes and thermonuclear burning on the neutron star surface. Improved large optical telescopes and more sensitive X-ray satellites have increased the number of known ultra compact X-ray binaries allowing their study with unprecedented detail. Aims: We analyze the average properties common to all ultra compact bursters observed by INTEGRAL from 0.2 keV to 150 keV. Methods: We have performed a systematic analysis of the INTEGRAL public data and Key-Program proprietary observations of a sample of the ultra compact X-ray binaries. In order to study their average properties in a very broad energy band, we combined INTEGRAL with BeppoSAX and SWIFT data whenever possible. For sources not showing any significant flux variations along the INTEGRAL monitoring, we build the average spectrum by combining all available data; in the case of variable fluxes, we use simultaneous INTEGRAL and SWIFT observations when available. Otherwise we compared IBIS and PDS data to check the variability and combine BeppoSAX with INTEGRAL /IBIS data. Results: All spectra are well represented by a two component model consisting of a disk-blackbody and Comptonised emission. The majority of these compact sources spend most of the time in a canonical low/hard state, with a dominating Comptonised component and accretion rate dot {M} lower than 10-9 {M⊙}/yr, not depending on the model used to fit the data. INTEGRAL is an ESA project with instruments and Science Data Center funded by ESA member states (especially the PI countries: Denmark, France, Germany, Italy, Switzerland, Spain), Czech Republic and Poland, and with the participation of Russia and the USA.

IBIS: An Interferometer-Based Imaging System for Detecting Extrasolar Planets with a Next Generation Space Telescope

NASA Technical Reports Server (NTRS)

Diner, David J.

1989-01-01

The direct detection of extrasolar planetary systems is a challenging observational objective. The observing system must be able to detect faint planetary signals against the background of diffracted and scattered starlight, zodiacal light, and in the IR, mirror thermal radiation. As part of a JPL study, we concluded that the best long-term approach is a 10-20 m filled-aperture telescope operating in the thermal IR (10-15 microns). At these wavelengths, the star/planet flux ratio is on the order of 10(exp 6)-10(exp 8). Our study supports the work of Angel et al., who proposed a cooled 16-m IR telescope and a special apodization mask to suppress the stellar light within a limited angular region around the star. Our scheme differs in that it is capable of stellar suppression over a much broader field-of- view, enabling more efficient planet searches. To do this, certain key optical signal-processing components are needed, including a coronagraph to apodize the stellar diffraction pattern, an infrared interferometer to provide further starlight suppression, a complementary visible-wavelength interferometer to sense figure errors in the telescope optics, and a deformable mirror to adaptively compensate for these errors. Because of the central role of interferometry we have designated this concept the Interferometer-Based Imaging System (IBIS). IBIS incorporates techniques originally suggested by Ken Knight for extrasolar planet detection at visible wavelengths. The type of telescope discussed at this workshop is well suited to implementation of the IBIS concept.

A comparison of macroinvertebrate and habitat methods of data collection in the Little Colorado River Watershed, Arizona 2007

USGS Publications Warehouse

Spindler, Patrice; Paretti, Nick V.

2007-01-01

The Arizona Department of Environmental Quality (ADEQ) and the U.S. Environmental Protection Agency (USEPA) Ecological Monitoring and Assessment Program (EMAP), use different field methods for collecting macroinvertebrate samples and habitat data for bioassessment purposes. Arizona’s Biocriteria index was developed using a riffle habitat sampling methodology, whereas the EMAP method employs a multi-habitat sampling protocol. There was a need to demonstrate comparability of these different bioassessment methodologies to allow use of the EMAP multi-habitat protocol for both statewide probabilistic assessments for integration of the EMAP data into the national (305b) assessment and for targeted in-state bioassessments for 303d determinations of standards violations and impaired aquatic life conditions. The purpose of this study was to evaluate whether the two methods yield similar bioassessment results, such that the data could be used interchangeably in water quality assessments. In this Regional EMAP grant funded project, a probabilistic survey of 30 sites in the Little Colorado River basin was conducted in the spring of 2007. Macroinvertebrate and habitat data were collected using both ADEQ and EMAP sampling methods, from adjacent reaches within these stream channels.

All analyses indicated that the two macroinvertebrate sampling methods were significantly correlated. ADEQ and EMAP samples were classified into the same scoring categories (meeting, inconclusive, violating the biocriteria standard) 82% of the time. When the ADEQ-IBI was applied to both the ADEQ and EMAP taxa lists, the resulting IBI scores were significantly correlated (r=0.91), even though only 4 of the 7 metrics in the IBI were significantly correlated. The IBI scores from both methods were significantly correlated to the percent of riffle habitat, even though the average percent riffle habitat was only 30% of the stream reach. Multivariate analyses found that the percent riffle was an important attribute for both datasets in classifying IBI scores into assessment categories.

Habitat measurements generated from EMAP and ADEQ methods were also significantly correlated; 13 of 16 habitat measures were significantly correlated (p<0.01). The visual-based percentage estimates of percent riffle and pool habitats, vegetative cover and percent canopy cover, and substrate measurements of percent fine substrate and embeddedness were all remarkably similar, given the different field methods used. A multivariate analysis identified substrate and flow conditions, as well as canopy cover as important combinations of habitat attributes affecting both IBI scores. These results indicate that similar habitat measures can be obtained using two different field sampling protocols. In addition, similar combinations of these habitat parameters were important to macroinvertebrate community condition in multivariate analyses of both ADEQ and EMAP datasets.

These results indicate the two sampling methods for macroinvertebrates and habitat data were very similar in terms of bioassessment results and stressors. While the bioassessment category was not identical for all sites, overall the assessments were significantly correlated, providing similar bioassessment results for the cold water streams used in this study. The findings of this study indicate that ADEQ can utilize either a riffle-based sampling methodology or a multi-habitat sampling approach in cold water streams as both yield similar results relative to the macroinvertebrate assemblage. These results will allow for use of either macroinvertebrate dataset to determine water quality standards compliance with the ADEQ Indexes of Biological Integrity, for which threshold values were just recently placed into the Arizona Surface Water Quality Standards. While this survey did not include warm water desert streams of Arizona, we would predict that EMAP and ADEQ sampling methodologies would provide similar bioassessment results and would not be significantly different, as we have found that the percent riffle habitat in cold and warm water perennial, wadeable streams is not significantly different. However, a comparison study of sampling methodologies in warm water streams should be conducted to confirm the predicted similarity of bioassessment results. ADEQ will continue to implement a monitoring strategy that includes probabilistic monitoring for a statewide ecological assessment of stream conditions. Conclusions from this study will guide decisions regarding the most appropriate sampling methods for future probabilistic monitoring sample plans.

Estimating Ecosystem Carbon Stock Change in the Conterminous United States from 1971 to 2010

NASA Astrophysics Data System (ADS)

Liu, J.; Sleeter, B. M.; Zhu, Z.; Loveland, T. R.; Sohl, T.; Howard, S. M.; Hawbaker, T. J.; Liu, S.; Heath, L. S.; Cochrane, M. A.; Key, C. H.; Jiang, H.; Price, D. T.; Chen, J. M.

2015-12-01

There is significant geographic variability in U.S. ecosystem carbon sequestration due to natural and human environmental conditions. Climate change, natural disturbance and human land use are the major driving forces that can alter local and regional carbon sequestration rates. In this study, a comprehensive environmental input dataset (1-km resolution) was developed and used in the process-based Integrated Biosphere Simulator (IBIS) to quantify the U.S. carbon stock changes from 1971-2010, which potentially forms a baseline for future U.S. carbon scenarios. The key environmental data sources include land cover change information from more than 2,600 sample blocks across U.S. (10-km by 10-km in size, 60-m resolution, 1973-2000), wildland fire scar and burn severity information (30-m resolution, 1984-2010), vegetation canopy percentage and live biomass level (30-m resolution, ~2000), spatially heterogeneous atmospheric carbon dioxide and nitrogen deposition (~50-km resolution, 2003-2009), and newly available climate (4-km resolution, 1895-2010) and soil variables (1-km resolution, ~2000). The IBIS simulated the effects of atmospheric CO2 fertilization, nitrogen deposition, climate change, fire, logging, and deforestation/devegetation on ecosystem carbon changes. Multiple comparable simulations were implemented to quantify the contributions of key environmental drivers.

Effects of empathy and conflict resolution strategies on psychophysiological arousal and satisfaction in romantic relationships.

PubMed

Perrone-McGovern, Kristin M; Oliveira-Silva, Patrícia; Simon-Dack, Stephanie; Lefdahl-Davis, Erin; Adams, David; McConnell, John; Howell, Desiree; Hess, Ryan; Davis, Andrew; Gonçalves, Oscar F

2014-03-01

The present research builds upon the extant literature as it assesses psychophysiological factors in relation to empathy, conflict resolution, and romantic relationship satisfaction. In this study, we examined physiological reactivity of individuals in the context of emotionally laden interactions with their romantic partners. Participants (N = 31) completed self-report measures and attended in-person data collection sessions with their romantic partners. Participants were guided through discussions of problems and strengths of their relationships in vivo with their partners while we measured participants' skin conductance level (SCL) and interbeat interval (IBI) of the heart. We hypothesized that participants' level of empathy towards their partners would be reflected by physiological arousal (as measured by SCL and IBI) and relationship satisfaction, such that higher levels of empathy would be linked to changes in physiological arousal and higher relationship satisfaction. Further, we hypothesized that differences would be found in physiological arousal (as measured by SCL and IBI) based on the type of conflict resolution strategy used by participants. Finally, we hypothesized that differences would be found in empathy towards partner and relationship satisfaction based on the type of conflict resolution strategies used by participants. Results partially supported hypotheses and were discussed in light of existing knowledge based on empirical and theoretical sources.

Propofol protects hippocampal neurons from apoptosis in ischemic brain injury by increasing GLT-1 expression and inhibiting the activation of NMDAR via the JNK/Akt signaling pathway.

PubMed

Gong, Hong-Yan; Zheng, Fang; Zhang, Chao; Chen, Xi-Yan; Liu, Jing-Jing; Yue, Xiu-Qin

2016-09-01

Ischemic brain injury (IBI) can cause nerve injury and is a leading cause of morbidity and mortality worldwide. The neuroprotective effects of propofol against IBI have been previously demonstrated. However, the neuroprotective effects of propofol on hippocampal neurons are not yet entirely clear. In the present study, models of IBI were established in hypoxia-exposed hippocampal neuronal cells. Cell viability assay and apoptosis assay were performed to examine the neuroprotective effects of propofol on hippocampal neurons in IBI. A significant decrease in cell viability and a significant increase in cell apoptosis were observed in the IBI group compared with the control group, accompanied by a decrease in glial glutamate transporter-1 (GLT‑1) expression as determined by RT-qPCR and western blot analysis. The effects of IBI were reversed by propofol treatment. The siRNA-mediated knockdown of GLT‑1 in the hypoxia-exposed hippocampal neuronal cells led to an increase in cell apoptosis, Jun N-terminal kinase (JNK) activation and N-methyl-D‑aspartate (NMDA) receptor (NR1 and NR2B) activation, as well as to a decrease in cell viability and a decrease in Akt activation. The effects of RNA interference-mediated GLT‑1 gene silencing on cell viability, JNK activation, NMDAR activation, cell apoptosis and Akt activation in the hippocampal neuronal cells were slightly reversed by propofol treatment. The JNK agonist, anisomycin, and the Akt inhibitor, LY294002, both significantly blocked the effects of propofol on hippocampal neuronal cell viability and apoptosis in IBI. The decrease in JNK activation and the increase in Akt activation caused by GLT‑1 overexpression were reversed by NMDA. Collectively, our findings suggest that propofol treatment protects hippocampal neurons against IBI by enhancing GLT‑1 expression and inhibiting the activation of NMDAR via the JNK/Akt signaling pathway.

The first report of a Pelecaniformes defensin cluster: Characterization of β-defensin genes in the crested ibis based on BAC libraries

PubMed Central

Lan, Hong; Chen, Hui; Chen, Li-Cheng; Wang, Bei-Bing; Sun, Li; Ma, Mei-Ying; Fang, Sheng-Guo; Wan, Qiu-Hong

2014-01-01

Defensins play a key role in the innate immunity of various organisms. Detailed genomic studies of the defensin cluster have only been reported in a limited number of birds. Herein, we present the first characterization of defensins in a Pelecaniformes species, the crested ibis (Nipponia nippon), which is one of the most endangered birds in the world. We constructed bacterial artificial chromosome libraries, including a 4D-PCR library and a reverse-4D library, which provide at least 40 equivalents of this rare bird's genome. A cluster including 14 β-defensin loci within 129 kb was assigned to chromosome 3 by FISH, and one gene duplication of AvBD1 was found. The ibis defensin genes are characterized by multiform gene organization ranging from two to four exons through extensive exon fusion. Splicing signal variations and alternative splice variants were also found. Comparative analysis of four bird species identified one common and multiple species-specific duplications, which might be associated with high GC content. Evolutionary analysis revealed birth-and-death mode and purifying selection for avian defensin evolution, resulting in different defensin gene numbers among bird species and functional conservation within orthologous genes, respectively. Additionally, we propose various directions for further research on genetic conservation in the crested ibis. PMID:25372018

Operational skill assessment of the IBI-MFC Ocean Forecasting System within the frame of the CMEMS.

NASA Astrophysics Data System (ADS)

Lorente Jimenez, Pablo; Garcia-Sotillo, Marcos; Amo-Balandron, Arancha; Aznar Lecocq, Roland; Perez Gomez, Begoña; Levier, Bruno; Alvarez-Fanjul, Enrique

2016-04-01

Since operational ocean forecasting systems (OOFSs) are increasingly used as tools to support high-stakes decision-making for coastal management, a rigorous skill assessment of model performance becomes essential. In this context, the IBI-MFC (Iberia-Biscay-Ireland Monitoring & Forecasting Centre) has been providing daily ocean model estimates and forecasts for the IBI regional seas since 2011, first in the frame of MyOcean projects and later as part of the Copernicus Marine Environment Monitoring Service (CMEMS). A comprehensive web validation tool named NARVAL (North Atlantic Regional VALidation) has been developed to routinely monitor IBI performance and to evaluate model's veracity and prognostic capabilities. Three-dimensional comparisons are carried out on a different time basis ('online mode' - daily verifications - and 'delayed mode' - for longer time periods -) using a broad variety of in-situ (buoys, tide-gauges, ARGO-floats, drifters and gliders) and remote-sensing (satellite and HF radars) observational sources as reference fields to validate against the NEMO model solution. Product quality indicators and meaningful skill metrics are automatically computed not only averaged over the entire IBI domain but also over specific sub-regions of particular interest from a user perspective (i.e. coastal or shelf areas) in order to determine IBI spatial and temporal uncertainty levels. A complementary aspect of NARVAL web tool is the intercomparison of different CMEMS forecast model solutions in overlapping areas. Noticeable efforts are in progress in order to quantitatively assess the quality and consistency of nested system outputs by setting up specific intercomparison exercises on different temporal and spatial scales, encompassing global configurations (CMEMS Global system), regional applications (NWS and MED ones) and local high-resolution coastal models (i.e. the PdE SAMPA system in the Gibraltar Strait). NARVAL constitutes a powerful approach to increase our knowledge on the IBI-MFC forecast system and aids us to inform CMEMS end users about the provided ocean forecasting products' confidence level by routinely delivering QUality Information Documents (QUIDs). It allows the detection of strengths and weaknesses in the modeling of several key physical processes and the understanding of potential sources of discrepancies in IBI predictions. Once the numerical model shortcomings are identified, potential improvements can be achieved thanks to reliable upgrades, making evolve IBI OOFS towards more refined and advanced versions.

The Effects of Increasing Ocular Surface Stimulation on Blinking and Sensation

PubMed Central

Wu, Ziwei; Begley, Carolyn G.; Situ, Ping; Simpson, Trefford

2014-01-01

Purpose. The purpose of this study was to determine how increasing ocular surface stimulation affected blinking and sensation, while controlling task concentration. Methods. Ten healthy subjects concentrated on a task while a custom pneumatic device generated air flow toward the central cornea. Six flow rates (FRs) were randomly presented three times each and subjects used visual analog scales to record their sensory responses. The interblink interval (IBI) and the FR were recorded simultaneously and the IBI, sensory response, and corresponding FR were determined for each trial. The FR associated with a statistically significant decrease in IBI, the blink increase threshold (BIT), was calculated for each subject. Results. Both the mean and SD of IBI were decreased with increasing stimulation, from 5.69 ± 3.96 seconds at baseline to 1.02 ± 0.37 seconds at maximum stimulation. The average BIT was 129 ± 20 mL/min flow rate with an IBI of 2.33 ± 1.10 seconds (permutation test, P < 0.001). After log transformation, there was a significant linear function between increasing FR and decreasing IBI within each subject (Pearson's r ≤ −0.859, P < 0.05). The IBI was highly correlated with wateriness, discomfort, and cooling ratings (Pearson's r ≤ −0.606, P < 0.001). Conclusions. There was a dose-response–like relationship between increased surface stimulation and blinking in healthy subjects, presumably for protection of the ocular surface. The blink response was highly correlated with ocular surface sensation, which is not surprising given their common origins. The BIT, a novel metric, may provide an additional end point for studies on dry eye or other conditions. PMID:24557346

Validation of the "Step-by-Step" Approach in the Management of Young Febrile Infants.

PubMed

Gomez, Borja; Mintegi, Santiago; Bressan, Silvia; Da Dalt, Liviana; Gervaix, Alain; Lacroix, Laurence

2016-08-01

A sequential approach to young febrile infants on the basis of clinical and laboratory parameters, including procalcitonin, was recently described as an accurate tool in identifying patients at risk for invasive bacterial infection (IBI). Our aim was to prospectively validate the Step-by-Step approach and compare it with the Rochester criteria and the Lab-score. Prospective study including infants ≤90 days with fever without source presenting in 11 European pediatric emergency departments between September 2012 and August 2014. The accuracy of the Step-by-Step approach, the Rochester criteria, and the Lab-score in identifying patients at low risk of IBI (isolation of a bacterial pathogen in a blood or cerebrospinal fluid culture) was compared. Eighty-seven of 2185 infants (4.0%) were diagnosed with an IBI. The prevalence of IBI was significantly higher in infants classified as high risk or intermediate risk according to the Step by Step than in low risk patients. Sensitivity and negative predictive value for ruling out an IBI were 92.0% and 99.3% for the Step by Step, 81.6% and 98.3% for the Rochester criteria, and 59.8% and 98.1% for the Lab-score. Seven infants with an IBI were misclassified by the Step by Step, 16 by Rochester criteria, and 35 by the Lab-score. We validated the Step by Step as a valuable tool for the management of infants with fever without source in the emergency department and confirmed its superior accuracy in identifying patients at low risk of IBI, compared with the Rochester criteria and the Lab-score. Copyright © 2016 by the American Academy of Pediatrics.

Forecasting carbon budget under climate change and CO2 fertilization for subtropical region in China using integrated biosphere simulator (IBIS) model

USGS Publications Warehouse

Zhu, Q.; Jiang, H.; Liu, J.; Peng, C.; Fang, X.; Yu, S.; Zhou, G.; Wei, X.; Ju, W.

2011-01-01

The regional carbon budget of the climatic transition zone may be very sensitive to climate change and increasing atmospheric CO2 concentrations. This study simulated the carbon cycles under these changes using process-based ecosystem models. The Integrated Biosphere Simulator (IBIS), a Dynamic Global Vegetation Model (DGVM), was used to evaluate the impacts of climate change and CO2 fertilization on net primary production (NPP), net ecosystem production (NEP), and the vegetation structure of terrestrial ecosystems in Zhejiang province (area 101,800 km2, mainly covered by subtropical evergreen forest and warm-temperate evergreen broadleaf forest) which is located in the subtropical climate area of China. Two general circulation models (HADCM3 and CGCM3) representing four IPCC climate change scenarios (HC3AA, HC3GG, CGCM-sresa2, and CGCM-sresb1) were used as climate inputs for IBIS. Results show that simulated historical biomass and NPP are consistent with field and other modelled data, which makes the analysis of future carbon budget reliable. The results indicate that NPP over the entire Zhejiang province was about 55 Mt C yr-1 during the last half of the 21st century. An NPP increase of about 24 Mt C by the end of the 21st century was estimated with the combined effects of increasing CO2 and climate change. A slight NPP increase of about 5 Mt C was estimated under the climate change alone scenario. Forests in Zhejiang are currently acting as a carbon sink with an average NEP of about 2.5 Mt C yr-1. NEP will increase to about 5 Mt C yr-1 by the end of the 21st century with the increasing atmospheric CO2 concentration and climate change. However, climate change alone will reduce the forest carbon sequestration of Zhejiang's forests. Future climate warming will substantially change the vegetation cover types; warm-temperate evergreen broadleaf forest will be gradually substituted by subtropical evergreen forest. An increasing CO2 concentration will have little contribution to vegetation changes. Simulated NPP shows geographic patterns consistent with temperature to a certain extent, and precipitation is not the limiting factor for forest NPP in the subtropical climate conditions. There is no close relationship between the spatial pattern of NEP and climate condition.

Forecasting carbon budget under climate change and CO 2 fertilization for subtropical region in China using integrated biosphere simulator (IBIS) model

USGS Publications Warehouse

Zhu, Q.; Jiang, H.; Liu, J.; Peng, C.; Fang, X.; Yu, S.; Zhou, G.; Wei, X.; Ju, W.

2011-01-01

The regional carbon budget of the climatic transition zone may be very sensitive to climate change and increasing atmospheric CO 2 concentrations. This study simulated the carbon cycles under these changes using process-based ecosystem models. The Integrated Biosphere Simulator (IBIS), a Dynamic Global Vegetation Model (DGVM), was used to evaluate the impacts of climate change and CO 2 fertilization on net primary production (NPP), net ecosystem production (NEP), and the vegetation structure of terrestrial ecosystems in Zhejiang province (area 101,800 km 2, mainly covered by subtropical evergreen forest and warm-temperate evergreen broadleaf forest) which is located in the subtropical climate area of China. Two general circulation models (HADCM3 and CGCM3) representing four IPCC climate change scenarios (HC3AA, HC3GG, CGCM-sresa2, and CGCM-sresb1) were used as climate inputs for IBIS. Results show that simulated historical biomass and NPP are consistent with field and other modelled data, which makes the analysis of future carbon budget reliable. The results indicate that NPP over the entire Zhejiang province was about 55 Mt C yr -1 during the last half of the 21 st century. An NPP increase of about 24 Mt C by the end of the 21 st century was estimated with the combined effects of increasing CO 2 and climate change. A slight NPP increase of about 5 Mt C was estimated under the climate change alone scenario. Forests in Zhejiang are currently acting as a carbon sink with an average NEP of about 2.5 Mt C yr -1. NEP will increase to about 5 Mt C yr -1 by the end of the 21 st century with the increasing atmospheric CO 2 concentration and climate change. However, climate change alone will reduce the forest carbon sequestration of Zhejiang's forests. Future climate warming will substantially change the vegetation cover types; warm-temperate evergreen broadleaf forest will be gradually substituted by subtropical evergreen forest. An increasing CO 2 concentration will have little contribution to vegetation changes. Simulated NPP shows geographic patterns consistent with temperature to a certain extent, and precipitation is not the limiting factor for forest NPP in the subtropical climate conditions. There is no close relationship between the spatial pattern of NEP and climate condition.

Decline of traditional rice farming constrains the recovery of the endangered Asian crested ibis (Nipponia nippon).

PubMed

Sun, Yiwen; Wang, Tiejun; Skidmore, Andrew K; Wang, Qi; Ding, Changqing

2015-12-01

Traditional agriculture benefits a rich diversity of plants and animals. The winter-flooded rice fields in the Qinling Mountains, China, are the last refuge for the endangered Asian crested ibis (Nipponia nippon), and intensive efforts have been made to protect this anthropogenic habitat. Analyses of multi-temporal satellite data indicate that winter-flooded rice fields have been continuously reduced across the current range of crested ibis during the past two decades. The rate of loss of these fields in the core-protected areas has unexpectedly increased to a higher level than that in non-protected areas in the past decade. The best fit (R (2) = 0.87) numerical response model of the crested ibis population shows that a reduction of winter-flooded rice fields decreases population growth and predicts that the population growth will be constrained by the decline of traditional winter-flooded rice fields in the coming decades. Our findings suggest that the decline of traditional rice farming is likely to continue to pose a threat to the long-term survival and recovery of the crested ibis population in China.

A summary of the benthic-invertebrate and fish-community data from streams in the Indianapolis metropolitan area, Indiana, 1981-2012

USGS Publications Warehouse

Voelker, David C.; Bunch, Aubrey R.; Dobrowolski, Edward G.; Shoda, Megan E.

2015-01-01

Beginning in 1994, the Ephemeroptera, Plecoptera, and Trichoptera (EPT) Index and Hilsenhoff Biotic Index (HBI) were calculated. Beginning in 1999, the Invertebrate Community Index (ICI) also was calculated from the benthic-invertebrate data. Fish-community data were collected periodically from 1999 to 2012, from which an Index of Biotic Integrity (IBI) was calculated.

An automated system for terrain database construction

NASA Technical Reports Server (NTRS)

Johnson, L. F.; Fretz, R. K.; Logan, T. L.; Bryant, N. A.

1987-01-01

An automated Terrain Database Preparation System (TDPS) for the construction and editing of terrain databases used in computerized wargaming simulation exercises has been developed. The TDPS system operates under the TAE executive, and it integrates VICAR/IBIS image processing and Geographic Information System software with CAD/CAM data capture and editing capabilities. The terrain database includes such features as roads, rivers, vegetation, and terrain roughness.

Feather mercury concentrations and physiological condition of great egret and white ibis nestlings in the Florida Everglades

USGS Publications Warehouse

Herring, G.; Gawlik, D.E.; Rumbold, D.G.

2009-01-01

Mercury contamination in the Florida Everglades has reportedly played a role in the recent decline of wading birds, although no studies have identified a mechanism leading to population-level effects. We assessed feather mercury levels in great egret (Ardea alba; n = 91) and white ibis (Eudocimus albus; n = 46) nestlings at breeding colonies in the Florida Everglades during a year (2006) with excellent breeding conditions (characterized by hydrology leading to concentrated prey) and a year with below average breeding conditions (2007). We also assessed the physiological condition of those nestlings based on levels of plasma and fecal corticosterone metabolites, and stress proteins 60 and 70. Mercury levels were higher in both species during the good breeding condition year (great egret = 6.25????g/g ?? 0.81 SE, white ibis = 1.47????g/g ?? 0.41 SE) and lower in the below average breeding year (great egret = 1.60????g/g ?? 0.11 SE, white ibis = 0.20????g/g ?? 0.03 SE). Nestlings were in better physiological condition in 2006, the year with higher feather mercury levels. These results support the hypothesis that nestlings are protected from the harmful effects of mercury through deposition of mercury in growing feathers. We found evidence to suggest shifts in diets of the two species, as a function of prey availability, thus altering their exposure profiles. However, we found no evidence to suggest they respond differently to mercury exposure. ?? 2008 Elsevier B.V. All rights reserved.

Built-up land mapping capabilities of the ASTER and Landsat ETM+ sensors in coastal areas of southeastern China

NASA Astrophysics Data System (ADS)

Xu, Hanqiu; Huang, Shaolin; Zhang, Tiejun

2013-10-01

Worldwide urbanization has accelerated expansion of urban built-up lands and resulted in substantial negative impacts on the global environments. Precisely measuring the urban sprawl is becoming an increasing need. Among the satellite-based earth observation systems, the Landsat and ASTER data are most suitable for mesoscale measurements of urban changes. Nevertheless, to date the difference in the capability of mapping built-up land between the two sensors is not clear. Therefore, this study compared the performances of the Landsat-7 ETM+ and ASTER sensors for built-up land mapping in the coastal areas of southeastern China. The comparison was implemented on three date-coincident image pairs and achieved by using three approaches, including per-band-based, index-based, and classification-based comparisons. The index used is the Index-based Built-up Index (IBI), while the classification algorithm employed is the Support Vector Machine (SVM). Results show that in the study areas, ETM+ and ASTER have an overall similar performance in built-up land mapping but also differ in several aspects. The IBI values determined from ASTER were consistently higher than from ETM+ by up to 45.54% according to percentage difference. The ASTER also estimates more built-up land area than ETM+ by 5.9-6.3% estimated with the IBI-based approach or 3.9-6.1% with the SVM classification. The differences in the spectral response functions and spatial resolution between relative spectral bands of the two sensors are attributed to these different performances.

Structure-based coarse-graining for inhomogeneous liquid polymer systems.

PubMed

Fukuda, Motoo; Zhang, Hedong; Ishiguro, Takahiro; Fukuzawa, Kenji; Itoh, Shintaro

2013-08-07

The iterative Boltzmann inversion (IBI) method is used to derive interaction potentials for coarse-grained (CG) systems by matching structural properties of a reference atomistic system. However, because it depends on such thermodynamic conditions as density and pressure of the reference system, the derived CG nonbonded potential is probably not applicable to inhomogeneous systems containing different density regimes. In this paper, we propose a structure-based coarse-graining scheme to devise CG nonbonded potentials that are applicable to different density bulk systems and inhomogeneous systems with interfaces. Similar to the IBI, the radial distribution function (RDF) of a reference atomistic bulk system is used for iteratively refining the CG nonbonded potential. In contrast to the IBI, however, our scheme employs an appropriately estimated initial guess and a small amount of refinement to suppress transfer of the many-body interaction effects included in the reference RDF into the CG nonbonded potential. To demonstrate the application of our approach to inhomogeneous systems, we perform coarse-graining for a liquid perfluoropolyether (PFPE) film coated on a carbon surface. The constructed CG PFPE model favorably reproduces structural and density distribution functions, not only for bulk systems, but also at the liquid-vacuum and liquid-solid interfaces, demonstrating that our CG scheme offers an easy and practical way to accurately determine nonbonded potentials for inhomogeneous systems.

Hidden costs associated with venous thromboembolism: impact of lost productivity on employers and employees.

PubMed

Page, Robert L; Ghushchyan, Vahram; Gifford, Brian; Read, Richard Allen; Raut, Monika; Bookhart, Brahim K; Naim, Ahmad B; Damaraju, C V; Nair, Kavita V

2014-09-01

To determine productivity loss and indirect costs with deep vein thrombosis (DVT) and pulmonary embolism (PE). Medical and pharmacy claims with short-term disability (STD) and long-term disability (LTD) claims from 2007 to 2010 were analyzed from the Integrated Benefits Institute's Health and Productivity Benchmarking (IBI-HPB) database (STD and LTD claims) and IMS LifeLink™ data (medical and pharmacy claims), which were indirectly linked using a weighting approach matching from IBI-HPB patients' demographic distribution. A total of 5442 DVT and 6199 PE claims were identified. Employees with DVT lost 57 STD and 440 LTD days per disability incident. The average per claim productivity loss from STD and LTD was $7414 and $58181, respectively. Employees with PE lost 56 STD and 364 LTD days per disability incident. The average per claim productivity loss from STD and LTD was $7605 and $48,751, respectively. Deep vein thrombosis and PE impose substantial economic burdens.

Organochlorine residues in six species of estuarine birds, South Carolina, 1971-75

USGS Publications Warehouse

Blus, L.J.; Lamont, T.G.

1979-01-01

In South Carolina between 1971 and 1975, authors evaluated the occurrence of organochlorine residues in the laughing gull (Larus atricilla), white ibis (Eudocimus albus), glossy ibis (Plegadis falcinellus), American oystercatcher (Haematopus palliatus), willet (Catoptrophorus semipalmatus), and ruddy turnstone (Arenaria interpres). Tissues of birds found dead and eggs were analyzed, eggshell thicknesses were measured, and incidental observations were made of reproductive success and population status. Eggshell thickness of the white bis, American oystercatcher, and laughing gull were not significantly different (P less than 0.05) from the pre-1947 norms. DDE and polychlorinated biphenyls (PCBs) were found most frequently and at the highest concentration in eggs. DDE residues declined significantly in oystercatcher eggs, and declined slightly in laughing gull eggs; no change was noted in white ibis eggs. No consistent trends were found for dieldrin and PCBs. Authors found no obvious problems with reproductive success of any species. Populations of the five species breeding in South Carolina appear stable. The white ibis and laughing gull in South Carolina have experienced population explosions over the past 50 years; the glossy ibis has increased substantially since the first documented breeding records in 1947.

New X-ray outburst of accreting millisecond pulsar SWIFT J1756.9-2508 detected by INTEGRAL

NASA Astrophysics Data System (ADS)

Mereminskiy, I. A.; Grebenev, S. A.; Krivonos, R. A.; Sunyaev, R. A.

2018-04-01

During recent observations (1-2 Apr 2018, PI: E.Bozzo) of the weak X-ray burster IGR J17379-3747 (#11447,#11487, Chelovekov et al. 2006, AstL, 32, 456) and regular observations of Galactic center region (2-3 Apr 2018, PI: R.A. Sunyaev) we detected a new X-ray transient in 20-60 keV sky maps obtained by IBIS/ISGRI.

A multi-year comparison of IPCI scores for prairie pothole wetlands: implications of temporal and spatial variation

USGS Publications Warehouse

Euliss, Ned H.; Mushet, David M.

2011-01-01

In the prairie pothole region of North America, development of Indices of Biotic Integrity (IBIs) to detect anthropogenic impacts on wetlands has been hampered by naturally dynamic inter-annual climate fluctuations. Of multiple efforts to develop IBIs for prairie pothole wetlands, only one, the Index of Plant Community Integrity (IPCI), has reported success. We evaluated the IPCI and its ability to distinguish between natural and anthropogenic variation using plant community data collected from 16 wetlands over a 4-year-period. We found that under constant anthropogenic influence, IPCI metric scores and condition ratings varied annually in response to environmental variation driven primarily by natural climate variation. Artificially forcing wetlands that occur along continuous hydrologic gradients into a limited number of discrete classes (e.g., temporary, seasonal, and semi-permanent) further confounded the utility of IPCI metrics. Because IPCI scores vary significantly due to natural climate dynamics as well as human impacts, methodology must be developed that adequately partitions natural and anthropogenically induced variation along continuous hydrologic gradients. Until such methodology is developed, the use of the IPCI to evaluate prairie pothole wetlands creates potential for misdirected corrective or regulatory actions, impairment of natural wetland functional processes, and erosion of public confidence in the wetland sciences.

Applying Benthic Index of Biotic Integrity in a soft bottom ecosystem in North of the Persian Gulf.

PubMed

Doustshenas, B; Savari, A; Nabavi, S M B; Kochanian, P; Sadrinasab, M

2009-06-15

In this study, the Chesapeake Bay Benthic Index of Biotic Integrity (B-IBI) was selected in an attempt to describe ecological health of soft bottom channels (Khowr-e Musa) in North of the Persian Gulf. Most of study area was found to be in degraded or severely degraded conditions. B-IBI scores were ranged between 1 and 3.86. Comparison ofmacrobenthos abundance and organic content between two developmental periods showed significant difference (p < 0.05). After the establishment and development of petrochemical industries, the abundance of macrofauna decreased (809 to 239 individuals m(-2)) and organic content increased leading to organic enrichment (15.3 to 22.4%). Three new sources of organic matter were found to be important namely industrial waste, sewage and mangrove litter. After 1999 about 6 millions Avicennia marina tree were planted near petrochemical zone in the area. Study area changed rapidly in the last decade and region is under severely anthropogenic impacts. The present study showed that Khowr-e Musa is under both natural stress and anthropogenic impacts and two main impacts could be attributed to the organic enrichment and to the dredging. Choice of suitable management plans and metric controls could help to the salvage of the largest tidal channel complex in Persian Gulf.

Syntheses, crystal structures and luminescent properties of two salts with 2-((1H-imidazol-1-yl)methyl)-1H-benzimidazole

NASA Astrophysics Data System (ADS)

Wang, Yong-Tao; Lü, Lin-Rui; Tang, Gui-Mei

2018-03-01

Two new benzimidazole salts, namely, [H2IBI]2+ 2X (X = NO3- (1), ClO4- (2) [IBI = 2-((1H-imidazol-1-yl)methyl)-1H-benzimidazole], were grown through reacting IBI and two different inorganic acids by slow evaporation method, respectively. Compounds 1 and 2 have been characterized by single-crystal X-ray diffraction, IR, UV-Vis, and thermogravimetric analyses (TGA). In both compounds, a set of hydrogen bonds (C/Nsbnd H⋯O) can be clearly observed, through which a three-dimensional framework will be generated. The luminescent spectra show the emission peaks in compounds 1 and 2 are found at 375 and 371 nm, respectively. By comparison with the free IBI, the emission maxima of compounds 1 and 2 are obviously red-shifted about 67 and 63 nm, respectively.

KSC-06pd0228

NASA Image and Video Library

2006-02-07

KENNEDY SPACE CENTER, FLA. - At NASA Kennedy Space Center, a roseate spoonbill (front) and white ibis search the murky canal for food. Spoonbills inhabit areas of mangrove such as on the coasts of southern Florida and Texas. These birds feed on shrimps and fish in the shallow water, sweeping their bills from side to side. White ibis inhabit marshy sloughs, mud flats, lagoons and swamp forests along the coast from South Carolina to Florida and Texas and south to northern South America. The ibis with the brown wings is an immature ibis. The Center shares a boundary with the Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the Refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Jim Grossmann

Efficient and Provable Secure Pairing-Free Security-Mediated Identity-Based Identification Schemes

PubMed Central

Chin, Ji-Jian; Tan, Syh-Yuan; Heng, Swee-Huay; Phan, Raphael C.-W.

2014-01-01

Security-mediated cryptography was first introduced by Boneh et al. in 2001. The main motivation behind security-mediated cryptography was the capability to allow instant revocation of a user's secret key by necessitating the cooperation of a security mediator in any given transaction. Subsequently in 2003, Boneh et al. showed how to convert a RSA-based security-mediated encryption scheme from a traditional public key setting to an identity-based one, where certificates would no longer be required. Following these two pioneering papers, other cryptographic primitives that utilize a security-mediated approach began to surface. However, the security-mediated identity-based identification scheme (SM-IBI) was not introduced until Chin et al. in 2013 with a scheme built on bilinear pairings. In this paper, we improve on the efficiency results for SM-IBI schemes by proposing two schemes that are pairing-free and are based on well-studied complexity assumptions: the RSA and discrete logarithm assumptions. PMID:25207333

Efficient and provable secure pairing-free security-mediated identity-based identification schemes.

PubMed

Chin, Ji-Jian; Tan, Syh-Yuan; Heng, Swee-Huay; Phan, Raphael C-W

2014-01-01

Security-mediated cryptography was first introduced by Boneh et al. in 2001. The main motivation behind security-mediated cryptography was the capability to allow instant revocation of a user's secret key by necessitating the cooperation of a security mediator in any given transaction. Subsequently in 2003, Boneh et al. showed how to convert a RSA-based security-mediated encryption scheme from a traditional public key setting to an identity-based one, where certificates would no longer be required. Following these two pioneering papers, other cryptographic primitives that utilize a security-mediated approach began to surface. However, the security-mediated identity-based identification scheme (SM-IBI) was not introduced until Chin et al. in 2013 with a scheme built on bilinear pairings. In this paper, we improve on the efficiency results for SM-IBI schemes by proposing two schemes that are pairing-free and are based on well-studied complexity assumptions: the RSA and discrete logarithm assumptions.

Transferable coarse-grained model for perfluorosulfonic acid polymer membranes

NASA Astrophysics Data System (ADS)

Kuo, An-Tsung; Okazaki, Susumu; Shinoda, Wataru

2017-09-01

Perfluorosulfonic acid (PFSA) polymer membranes are widely used as proton exchange membranes. Because the structure of the aqueous domain within the PFSA membrane is expected to directly influence proton conductance, many coarse-grained (CG) simulation studies have been performed to investigate the membrane morphology; these studies mostly used phenomenological models, such as dissipative particle dynamics. However, a chemically accurate CG model is required to investigate the morphology in realistic membranes and to provide a concrete molecular design. Here, we attempt to construct a predictive CG model for the structure and morphology of PFSA membranes that is compatible with the Sinoda-DeVane-Klein (SDK) CG water model [Shinoda et al., Mol. Simul. 33, 27 (2007)]. First, we extended the parameter set for the SDK CG force field to examine a hydrated PFSA membrane based on thermodynamic and structural data from experiments and all-atom (AA) molecular dynamics (MD) simulations. However, a noticeable degradation of the morphology motivated us to improve the structural properties by using the iterative Boltzmann inversion (IBI) approach. Thus, we explored a possible combination of the SDK and IBI approaches to describe the nonbonded interaction. The hybrid SDK/IBI model improved the structural issues of SDK, showing a better agreement with AA-MD in the radial distribution functions. The hybrid SDK/IBI model was determined to reasonably reproduce both the thermodynamic and structural properties of the PFSA membrane for all examined water contents. In addition, the model demonstrated good transferability and has considerable potential for application to realistic long-chained PFSA membranes.

On the nature of the SWIFT/INTEGRAL source SWIFT J1508.6-4953 (also PMN J1508-4953)

NASA Astrophysics Data System (ADS)

Landi, R.; Bassani, L.; Masetti, N.; Bazzano, A.; Parisi, P.; Drave, S.; Goossens, M.

2012-06-01

This source is listed in the recent INTEGRAL/IBIS 9-year Galactic Hard X-ray Survey (Krivonos et al. 2012, arXiv:1205.3941) and also appears in the BAT 58-month catalogue (http://heasarc.nasa.gov/docs/swift/results/bs58mon/). It has been associated with the radio source PMN J1508-4953, also reported as a GeV emitter in the 2nd Fermi catalogue (Nolan et al. 2012, ApJS, 199, 31). We use archival Swift/XRT data to investigate its nature.

The Private Military Industry: Economic Analysis, Uses & Considerations

DTIC Science & Technology

2007-03-01

Intelligence US (cont.) Flour International SAIC Pacific Architects and Engineers Ibis Tek MVM Ibis Tek Samson Int’l Parsons ICI, Oregon New...Vinnell Meyer and Associates Prasons Parsons Worldwide Security MVM Protective Operation Corporate Training Raytheon New Bridge Strategies

Crisis water management and ibis breeding at Narran Lakes in arid Australia.

PubMed

Brandis, K J; Kingsford, R T; Ren, S; Ramp, D

2011-09-01

Narran Lakes is a Ramsar site recognised for its importance for colonial waterbird breeding, which only occurs after large highly variable flooding events. In 2008, 74,095 pairs of ibis bred for the first time in seven years, establishing two contiguous colonies, a month apart. Most (97%) of the colony consisted of the straw-necked ibis (Threskiornis spinicollis) with the remainder consisting of glossy ibis (2%, Plegadis falcinellus) and Australian white ibis (1%, T. molucca). Following cessation of river flows, water levels fell rapidly in the colony site, resulting in a crisis management decision by governments to purchase and deliver water (10,423 Ml) to avert mass desertion of the colonies. There were significant differences in the reproductive success of each colony. In colony 1 60% of eggs hatched and 94% of chicks fledged, while in colony 2 40% of eggs hatched with only 17% of chicks fledging. Statistical analyses found that water depth was a significant variable in determining reproductive success. Rapid falls in water level during the chick stage in colony 2 resulted in decreased chick and overall offspring success. The results of this study identify the impact of upstream water resource development on colonial waterbird breeding and have implications for water management policies.

Manufacturing Methods & Technology Project Execution Report. First Half CY 80

DTIC Science & Technology

1980-08-01

1 80 7371 INTEGRATED BLADE INSPECTION SYSTEM (IBIS) INSPECTION OF TURBINE ENGINE BLADES AND VANES NECESSITATES HIGH ACCURACY. THE EFFORT IS TIME...OPTICAL INSP OF PRINTED CIRCUIT BOARDS OPERATOR FATIGUE ALLOWS MANY BAD PCBSS TO PASS VISUAL INSPECTION . 29 PROJECTS ADDED IN 1ST HALF» CY80...2631 TITLED "CRITICAL ELECTROHAGNETIC INSPECTION PROBLEMS WITHIN THE ARMY." FUTURE STATUS WILL BE INCLUDED IN THE PROJECT STATUS FOR M 80 6350

Effects of contaminants on reproductive success of aquatic birds nesting at Edwards Air Force Base, California

USGS Publications Warehouse

Hothem, R.L.; Crayon, J.J.; Law, M.A.

2006-01-01

Contamination by organochlorine pesticides (OCs), polychlorinated biphenyls, metals, and trace elements at Edwards Air Force Base (EAFB), located in the Mojave Desert, could adversely affect nesting aquatic birds, especially at the sewage lagoons that comprise Piute Ponds. Estimates of avian reproduction, in conjunction with analyses of eggs and avian foods for contaminant residues, may indicate the potential for negative effects on avian populations. From 1996 to 1999, we conducted studies at the Piute Ponds area of EAFB to evaluate the impacts of contaminants on nesting birds. Avian reproduction was evaluated in 1999. Eggs were collected for chemical analyses in 1996 and 1999, and African clawed frogs (Xenopus laevis), a likely food source, were collected for chemical analyses in 1998. Avian species occupying the higher trophic levels-black-crowned night-heron (Nycticorax nycticorax), white-faced ibis (Plegadis chihi), and American avocet (Recurvirostra americana)-generally bioaccumulated higher concentrations of contaminants in their eggs. Reproductive success and egg hatchability of night-herons and white-faced ibises in the Piute Ponds were similar to results observed at other western colonies. Deformities were observed in only one embryo in this study, but concentrations of contaminants evaluated in this ibis embryo were considered insufficient to have caused the deformities. Because clawed frogs, a primary prey item for night-herons at Piute Ponds, had no detectable levels of any OCs, it is likely that OCs found in night-heron eggs were acquired from the wintering grounds rather than from EAFB. The presence of isomers of dichlorodiphenyltrichloroethane (DDT) in ibis eggs indicated recent exposure, but invertebrates used for food by ibises were not sampled at Piute Ponds, and conclusions about the source of OCs in ibis eggs could not be made. Concentrations of contaminants in random and failed eggs of individual species were not different, and we concluded that contaminants did not cause the observed egg failures. ?? 2006 Springer Science+Business Media, Inc.

Effects of multi-scale environmental characteristics on agricultural stream biota in eastern Wisconsin

USGS Publications Warehouse

Fitzpatrick, F.A.; Scudder, B.C.; Lenz, B.N.; Sullivan, D.J.

2001-01-01

The U.S. Geological Survey examined 25 agricultural streams in eastern Wisconsin to determine relations between fish, invertebrate, and algal metrics and multiple spatial scales of land cover, geologic setting, hydrologic, aquatic habitat, and water chemistry data. Spearman correlation and redundancy analyses were used to examine relations among biotic metrics and environmental characteristics. Riparian vegetation, geologic, and hydrologic conditions affected the response of biotic metrics to watershed agricultural land cover but the relations were aquatic assemblage dependent. It was difficult to separate the interrelated effects of geologic setting, watershed and buffer land cover, and base flow. Watershed and buffer land cover, geologic setting, reach riparian vegetation width, and stream size affected the fish IBI, invertebrate diversity, diatom IBI, and number of algal taxa; however, the invertebrate FBI, percentage of EPT, and the diatom pollution index were more influenced by nutrient concentrations and flow variability. Fish IBI scores seemed most sensitive to land cover in the entire stream network buffer, more so than watershed-scale land cover and segment or reach riparian vegetation width. All but one stream with more than approximately 10 percent buffer agriculture had fish IBI scores of fair or poor. In general, the invertebrate and algal metrics used in this study were not as sensitive to land cover effects as fish metrics. Some of the reach-scale characteristics, such as width/depth ratios, velocity, and bank stability, could be related to watershed influences of both land cover and geologic setting. The Wisconsin habitat index was related to watershed geologic setting, watershed and buffer land cover, riparian vegetation width, and base flow, and appeared to be a good indicator of stream quality. Results from this study emphasize the value of using more than one or two biotic metrics to assess water quality and the importance of environmental characteristics at multiple scales.

Classification of a Driver's cognitive workload levels using artificial neural network on ECG signals.

PubMed

Tjolleng, Amir; Jung, Kihyo; Hong, Wongi; Lee, Wonsup; Lee, Baekhee; You, Heecheon; Son, Joonwoo; Park, Seikwon

2017-03-01

An artificial neural network (ANN) model was developed in the present study to classify the level of a driver's cognitive workload based on electrocardiography (ECG). ECG signals were measured on 15 male participants while they performed a simulated driving task as a primary task with/without an N-back task as a secondary task. Three time-domain ECG measures (mean inter-beat interval (IBI), standard deviation of IBIs, and root mean squared difference of adjacent IBIs) and three frequencydomain ECG measures (power in low frequency, power in high frequency, and ratio of power in low and high frequencies) were calculated. To compensate for individual differences in heart response during the driving tasks, a three-step data processing procedure was performed to ECG signals of each participant: (1) selection of two most sensitive ECG measures, (2) definition of three (low, medium, and high) cognitive workload levels, and (3) normalization of the selected ECG measures. An ANN model was constructed using a feed-forward network and scaled conjugate gradient as a back-propagation learning rule. The accuracy of the ANN classification model was found satisfactory for learning data (95%) and testing data (82%). Copyright © 2016 Elsevier Ltd. All rights reserved.

Identifying sources of stress to native aquatic fauna using a watershed ecological risk assessment framework.

PubMed

Diamond, J M; Serveiss, V B

2001-12-15

The free-flowing Clinch and Powell River Basin, located in southwestern Virginia, United States, historically had one of the richest assemblages of native fish and freshwater mussels in the world. Nearly half of the species once residing here are now extinct, threatened, or endangered. The United States Environmental Protection Agency's framework for conducting an ecological risk assessment was used to structure a watershed-scale analysis of human land use, in-stream habitat quality, and their relationship to native fish and mussel populations in order to develop future management strategies and prioritize areas in need of enhanced protection. Our analyses indicate that agricultural and urban land uses as well as proximity to mining activities and transportation corridors are inversely related to fish index of biotic integrity (IBI) and mussel species diversity. Forward stepwise multiple regression analyses indicated that coal mining had the most impact on fish IBI followed by percent cropland and urban area in the riparian corridor (R2 = 0.55, p = 0.02); however, these analyses suggest that other site-specific factors are important. Habitat quality measures accounted for as much as approximately half of the variability in fish IBI values if the analysis was limited to sites within a relatively narrow elevation range. These results, in addition to other data collected in this watershed, suggest that nonhabitat-related stressors (e.g., accidental chemical spills) also have significant effects on biota in this basin. The number of co-occurring human land uses was inversely related to fish IBI (r = -0.49, p < 0.01). Sites with > or = 2 co-occurring land uses had >90% probability of having <2 mussel species present. Our findings predict that many mussel concentration sites are vulnerable to future extirpation. In addition, our results suggest that protection and enhancement of naturally vegetated riparian corridors, better controls of mine effluents and urban runoff, and increased safeguards against accidental chemical spills, as well as reintroduction or augmentation of threatened and endangered species, may help sustain native fish and mussel populations in this watershed.

Wintering area DDE source to migratory white-faced ibis revealed by satellite telemetry and prey sampling.

PubMed

Yates, Michael A; Fuller, Mark R; Henny, Charles J; Seegar, William S; Garcia, Jaqueline

2010-01-01

Locations of contaminant exposure for nesting migratory species are difficult to fully understand because of possible additional sources encountered during migration or on the wintering grounds. A portion of the migratory white-faced ibis (Plegadis chihi) nesting at Carson Lake, Nevada continues to be exposed to dichloro-diphenyldichloro-ethylene (DDE) with no change, which is unusual, observed in egg concentrations between 1985 and 2000. About 45-63% of the earliest nesting segment shows reduced reproductive success correlated with elevated egg concentrations of >4 microg/g wet weight (ww). Local prey (primarily earthworms) near nests contained little DDE so we tracked the migration and wintering movements of 20 adult males during 2000-2004 to determine the possible source. At various wintering sites, we found a correlation (r (2) = 0.518, P = 0.0125, N = 11) between DDE in earthworm composites and DDE in blood plasma of white-faced ibis wintering there, although the plasma was collected on their breeding grounds soon after arrival. The main source of DDE was wintering areas in the Mexicali Valley of Baja California Norte, Mexico, and probably the adjacent Imperial Valley, California, USA. This unusual continuing DDE problem for white-faced ibis is associated with: the long-term persistence in soil of DDE; the earthworms' ability to bioconcentrate DDE from soil; the proclivity of white-faced ibis to feed on earthworms in agricultural fields; the species's extreme sensitivity to DDE in their eggs; and perhaps its life history strategy of being a "capital breeder". We suggest surveying and sampling white-faced ibis eggs at nesting colonies, especially at Carson Lake, to monitor the continuing influence of DDE.

The Effects of Increasing Ocular Surface Stimulation on Blinking and Tear Secretion

PubMed Central

Wu, Ziwei; Begley, Carolyn G.; Port, Nicholas; Bradley, Arthur; Braun, Richard; King-Smith, Ewen

2015-01-01

Purpose. To investigate the effect of varying levels of ocular surface stimulation on the timing and amplitude of the blink and tear secretion. Methods. Following instillation of fluorescein dye, increasing levels of air flow were directed toward the central corneas of 10 healthy subjects. Interblink interval (IBI), tear meniscus height (TMH), and fluorescence intensity were measured simultaneously. Because blinking can obscure changes in TMH, we developed novel measures of tear secretion by calculating tear meniscus fluorescein concentration (TMFC) from intensity using a mathematical model. The change of TMH and TMFC over trials and the slope of the TMFC within each IBI (IBI-TTR) were further calculated. Results. The mean IBI was decreased by 8.08 ± 8.54 seconds from baseline to maximum air stimulation. The TMH increase was highly variable (0.41 ± 0.39 mm) among subjects, compared to the fluorescence tear turnover metrics: decrease in TMFC of 2.84 ± 0.98 natural logarithm or ln(%) and IBI-TTR of 0.065 ± 0.032 ln(%)/sec. Ocular surface stimulation was highly correlated with the TMFC and IBI-TTR, but less so with TMH (Pearson's r = 0.71, 0.69, and 0.40, P < 0.01, respectively). Blinking and tearing were significantly correlated with each other (Pearson's r = 0.56, P < 0.01), but tearing lagged behind by an average of 6.54 ± 4.07 seconds. Conclusions. Blinking and tearing share a common origin with sensory stimulation at the ocular surface. Both showed a dose–response increase with surface stimulation and were correlated with each other. These methods can potentially be used to understand alterations in ocular surface sensory function and associated protective responses in dry eye and other disorders of the ocular surface. PMID:26132780

The Effects of Increasing Ocular Surface Stimulation on Blinking and Tear Secretion.

PubMed

Wu, Ziwei; Begley, Carolyn G; Port, Nicholas; Bradley, Arthur; Braun, Richard; King-Smith, Ewen

2015-07-01

To investigate the effect of varying levels of ocular surface stimulation on the timing and amplitude of the blink and tear secretion. Following instillation of fluorescein dye, increasing levels of air flow were directed toward the central corneas of 10 healthy subjects. Interblink interval (IBI), tear meniscus height (TMH), and fluorescence intensity were measured simultaneously. Because blinking can obscure changes in TMH, we developed novel measures of tear secretion by calculating tear meniscus fluorescein concentration (TMFC) from intensity using a mathematical model. The change of TMH and TMFC over trials and the slope of the TMFC within each IBI (IBI-TTR) were further calculated. The mean IBI was decreased by 8.08 ± 8.54 seconds from baseline to maximum air stimulation. The TMH increase was highly variable (0.41 ± 0.39 mm) among subjects, compared to the fluorescence tear turnover metrics: decrease in TMFC of 2.84 ± 0.98 natural logarithm or ln(%) and IBI-TTR of 0.065 ± 0.032 ln(%)/sec. Ocular surface stimulation was highly correlated with the TMFC and IBI-TTR, but less so with TMH (Pearson's r = 0.71, 0.69, and 0.40, P < 0.01, respectively). Blinking and tearing were significantly correlated with each other (Pearson's r = 0.56, P < 0.01), but tearing lagged behind by an average of 6.54 ± 4.07 seconds. Blinking and tearing share a common origin with sensory stimulation at the ocular surface. Both showed a dose-response increase with surface stimulation and were correlated with each other. These methods can potentially be used to understand alterations in ocular surface sensory function and associated protective responses in dry eye and other disorders of the ocular surface.

Wintering area DDE source to migratory white-faced ibis revealed by satellite telemetry and prey sampling

USGS Publications Warehouse

Yates, M.A.; Fuller, M.R.; Henny, C.J.; Seegar, W.S.; Garcia, Jorge H.

2010-01-01

Locations of contaminant exposure for nesting migratory species are difficult to fully understand because of possible additional sources encountered during migration or on the wintering grounds. A portion of the migratory white-faced ibis (Plegadis chihi) nesting at Carson Lake, Nevada continues to be exposed to dichloro-diphenyldichloro-ethylene (DDE) with no change, which is unusual, observed in egg concentrations between 1985 and 2000. About 45-63% of the earliest nesting segment shows reduced reproductive success correlated with elevated egg concentrations of >4 ??g/g wet weight (ww). Local prey (primarily earthworms) near nests contained little DDE so we tracked the migration and wintering movements of 20 adult males during 2000-2004 to determine the possible source. At various wintering sites, we found a correlation (r 2 = 0.518, P = 0.0125, N = 11) between DDE in earthworm composites and DDE in blood plasma of white-faced ibis wintering there, although the plasma was collected on their breeding grounds soon after arrival. The main source of DDE was wintering areas in the Mexicali Valley of Baja California Norte, Mexico, and probably the adjacent Imperial Valley, California, USA. This unusual continuing DDE problem for white-faced ibis is associated with: the long-term persistence in soil of DDE; the earthworms' ability to bioconcentrate DDE from soil; the proclivity of white-faced ibis to feed on earthworms in agricultural fields; the species's extreme sensitivity to DDE in their eggs; and perhaps its life history strategy of being a "capital breeder". We suggest surveying and sampling white-faced ibis eggs at nesting colonies, especially at Carson Lake, to monitor the continuing influence of DDE. ?? 2009 Springer Science+Business Media, LLC.

Patient choice, Internet based information sources, and perceptions of health care: Evidence from Sweden using survey data from 2010 and 2013.

PubMed

Wahlstedt, Emma; Ekman, Björn

2016-08-01

Several countries have increased patients' abilities to choose their health care providers, frequently under the assumption that patients are themselves the best agents to make such decisions. In parallel, national and regional health authorities have enhanced access to Internet based information sources (IBIS) to assist patients in making an informed choice. Relatively little, however, is known about the effect that the use of such sources has on key outcomes, including patients' perceptions of care. The aim of this study is to analyze the role of the Internet for patients' confidence in the provider and perceived access to care in the context of choice based reforms in Sweden. The study uses a regional, population health survey from the southern part of Sweden. Non-parametric chi-square tests are used to assess the nature of Internet users, including their gender, age and socioeconomic status. Logistic regression models are specified to analyze the role of IBIS on patient perceptions of care while controlling for other factors. Actual use of Internet based information sources for health care was relatively low in 2010 and only somewhat higher in 2013. The characteristics of IBIS users varied significantly across different population groups, such that they were younger, more educated, female, and also considered themselves to be in better health compared with those who reported not using this source of health care information. Finally, the average IBIS user was less likely to report having a high level of satisfaction with respect to their primary care use; OR 0.69 [95 % CI: 0.54-0,87] and OR 0.52 [95 % CI: 0,41-0,66], for confidence in provider and perceived access to care, respectively, in 2013. Despite health agencies' attempts to make information on health care providers available on the Internet, this source of health care information is not used to any large extent in the current sample. The fact that some people use this source of information more compared with others suggests the need to consider alternative ways of informing the general public about choice options. The use of Internet based sources may also be linked with the experience of actually using health services, which suggests a need to further analyze this complex consumer behavior process.

The SIX survey: evolution and properties of AGN in the local universe

NASA Astrophysics Data System (ADS)

Bottacini, Eugenio

2014-07-01

Current most sensitive surveys at soft X-ray (~ 0.5-10 keV) energies by Chandra and XMM-Newton preferably sample AGN at high-redshift (z > 0.5). At low-redshift (z < 0.5), where AGN are supposed to be in their evolution end-stage, these sources are very sparsely sampled. The low-redshift universe is best fathomed at hard X-ray energies (> 15 keV) by the INTEGRAL and the Swift missions with their coded-mask telescopes IBIS/ISGRI and BAT respectively. These instruments have two major advantages: 1) they have a huge field of view, hence allowing to sample a large number of AGN at low-redshift; 2) they operate at energies above 15 keV, hence allowing detecting photons with enough power to efficiently pierce even through the Compton-thick torus of AGN. Estimates based on observations with PDS on board the BeppoSAX satellite predict that Compton-thick AGN should dominate over unabsorbed AGN in the local universe playing an important role in reproducing the shape and intensity of the cosmic X-ray background (CXB). However coded-mask detectors suffer from heavy systematic effects preventing them from reaching their theoretical limiting sensitivity. We overcome this limit with a new and alternative approach, which has been designed ad hoc to improve the sensitivity of hard X-ray surveys by using IBIS/ISGRI and BAT. Both telescopes are so close in design that their observations can be combined to obtain a more sensitive survey. The observations are combined with resampling, merging, and cross-calibration techniques. We are able to sample limiting fluxes of the order of ~3.3 times 10-12 erg cm-2 s-1 in the 18-55 keV energy range. This is called the SIX survey, that stands for Swift-INTEGRAL X-ray survey. The SIX survey extends over a wide sky area of 6200 deg2 and it is used to obtain a persistent sample of faint AGN. The source number density (log N - log S) is a factor of 3 better than current parent surveys of BAT and IBIS/ISGRI alone. I will present a study of the evolution of AGN in the local universe discussing the X-ray luminosity function. The properties of the AGN circum-nuclear environment will be discussed checking the consistency with the AGN unification scheme. Also I will compare the results from the SIX survey to the results predicted for the NuSTAR survey. Finally preliminary results of the all-sky SIX survey are presented.

EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species

PubMed Central

Nascimento, Leandro Costa; Salazar, Marcela Mendes; Lepikson-Neto, Jorge; Camargo, Eduardo Leal Oliveira; Parreiras, Lucas Salera; Carazzolle, Marcelo Falsarella

2017-01-01

Abstract Tree species of the genus Eucalyptus are the most valuable and widely planted hardwoods in the world. Given the economic importance of Eucalyptus trees, much effort has been made towards the generation of specimens with superior forestry properties that can deliver high-quality feedstocks, customized to the industrýs needs for both cellulosic (paper) and lignocellulosic biomass production. In line with these efforts, large sets of molecular data have been generated by several scientific groups, providing invaluable information that can be applied in the development of improved specimens. In order to fully explore the potential of available datasets, the development of a public database that provides integrated access to genomic and transcriptomic data from Eucalyptus is needed. EUCANEXT is a database that analyses and integrates publicly available Eucalyptus molecular data, such as the E. grandis genome assembly and predicted genes, ESTs from several species and digital gene expression from 26 RNA-Seq libraries. The database has been implemented in a Fedora Linux machine running MySQL and Apache, while Perl CGI was used for the web interfaces. EUCANEXT provides a user-friendly web interface for easy access and analysis of publicly available molecular data from Eucalyptus species. This integrated database allows for complex searches by gene name, keyword or sequence similarity and is publicly accessible at http://www.lge.ibi.unicamp.br/eucalyptusdb. Through EUCANEXT, users can perform complex analysis to identify genes related traits of interest using RNA-Seq libraries and tools for differential expression analysis. Moreover, all the bioinformatics pipeline here described, including the database schema and PERL scripts, are readily available and can be applied to any genomic and transcriptomic project, regardless of the organism. Database URL: http://www.lge.ibi.unicamp.br/eucalyptusdb PMID:29220468

NDVI statistical distribution of pasture areas at different times in the Community of Madrid (Spain)

NASA Astrophysics Data System (ADS)

Martín-Sotoca, Juan J.; Saa-Requejo, Antonio; Díaz-Ambrona, Carlos G. H.; Tarquis, Ana M.

2015-04-01

The severity of drought has many implications for society, including its impacts on the water supply, water pollution, reservoir management and ecosystem. However, its impacts on rain-fed agriculture are especially direct. Because of the importance of drought, there have been many attempts to characterize its severity, resulting in the numerous drought indices that have been developed (Niemeyer 2008). 'Biomass index' based on satellite image derived Normalized Difference Vegetation Index (NDVI) has been used in countries like United States of America, Canada and Spain for pasture and forage crops for some years (Rao, 2010). This type of agricultural insurance is named as 'index-based insurance' (IBI). IBI is perceived to be substantially less costly to operate and manage than multiple peril insurance. IBI contracts pay indemnities based not on the actual yield (or revenue) losses experienced by the insurance purchaser but rather based on realized NDVI values (historical data) that is correlated with farm-level losses (Xiaohui Deng et al., 2008). Definition of when drought event occurs is defined on NDVI threshold values mainly based in statistical parameters, average and standard deviation that characterize a normal distribution. In this work a pasture area at the north of Community of Madrid (Spain) has been delimited. Then, NDVI historical data was reconstructed based on remote sensing imaging MODIS, with 500x500m2 resolution. A statistical analysis of the NDVI histograms at consecutives 46 intervals of that area was applied to search for the best statistical distribution based on the maximum likelihood criteria. The results show that the normal distribution is not the optimal representation when IBI is available; the implications in the context of crop insurance are discussed (Martín-Sotoca, 2014). References Kolli N Rao. 2010. Index based Crop Insurance. Agriculture and Agricultural Science Procedia 1, 193-203. Martín-Sotoca, J.J. (2014) Estructura Espacial de la Sequía en Pastos y sus Aplicaciones en el Seguro Agrario. Master Thesis, UPM (In Spanish). Niemeyer, S., 2008: New drought indices. First Int. Conf. on Drought Management: Scientific and Technological Innovations, Zaragoza, Spain, Joint Research Centre of the European Commission. [Available online at http://www.iamz.ciheam.org/medroplan/zaragoza2008/Sequia2008/Session3/S.Niemeyer.pdf.] Xiaohui Deng, Barry J. Barnett, Gerrit Hoogenboom, Yingzhuo Yu and Axel Garcia y Garcia 2008. Alternative Crop Insurance Indexes. Journal of Agricultural and Applied Economics, 40(1), 223-237. Acknowledgements First author acknowledges the Research Grant obtained from CEIGRAM in 2014

Computer Supported Argument Visualisation: Modelling in Consultative Democracy Around Wicked Problems

NASA Astrophysics Data System (ADS)

Ohl, Ricky

In this case study, computer supported argument visualisation has been applied to the analysis and representation of the draft South East Queensland Regional Plan Consultation discourse, demonstrating how argument mapping can help deliver the transparency and accountability required in participatory democracy. Consultative democracy for regional planning falls into a category of problems known as “wicked problems”. Inherent in this environment is heterogeneous viewpoints, agendas and voices, built on disparate and often contradictory logic. An argument ontology and notation that was designed specifically to deal with consultative urban planning around wicked problems is the Issue Based Information System (IBIS) and IBIS notation (Rittel & Webber, 1984). The software used for argument visualisation in this case was Compendium, a derivative of IBIS. The high volume of stakeholders and discourse heterogeneity in this environment calls for a unique approach to argument mapping. The map design model developed from this research has been titled a “Consultation Map”. The design incorporates the IBIS ontology within a hybrid of mapping approaches, amalgamating elements from concept, dialogue, argument, debate, thematic and tree-mapping. The consultation maps developed from the draft South East Queensland Regional Plan Consultation provide a transparent visual record to give evidence of the themes of citizen issues within the consultation discourse. The consultation maps also link the elicited discourse themes to related policies from the SEQ Regional Plan providing explicit evidence of SEQ Regional Plan policy-decisions matching citizen concerns. The final consultation map in the series provides explicit links between SEQ Regional Plan policy items and monitoring activities reporting on the ongoing implementation of the SEQ Regional Plan. This map provides updatable evidence of and accountability for SEQ Regional Plan policy implementation and developments.

Climate Change Implications to Irrigated Rice Production in Southern Brazil: A Modelling Approach

NASA Astrophysics Data System (ADS)

Dos Santos, Thiago

Rice is one of the staple foods for more than three billion people worldwide. When cultivated under irrigated conditions (i.e. lowland rice), rice is one of the most intensive water consumer crops globally. Therefore, representation of rice growth should be integrated into the latest land surface models to allow studies on food security and to ensure that accurate simulations of the bidirectional feedbacks between the land surface and atmosphere take place. In this study, I present a new process-based model for rice fields that includes rice growth and rice irrigation as modules within the Agro-IBIS dynamic agro-ecosystem model. The model includes a series of equations, agricultural management parameters and an irrigation scheme that are specifically tailored for rice crops. The model was evaluated against leaf area index and biomass observations, obtained for one growing season in Rio Grande do Sul state (southern Brazil), and in Los Banos, Philippines. The model accurately captured the temporal dynamics of leaf area index in both the Brazilian and the Philippine sites, and predicted end-of-season biomass with an error of between -9.5% and 11.3% depending on the location and the plant organ. Rice phenology is predicted by the model based on experimentally-derived growth rates, and was evaluated by comparing simulated and observed durations of the four growth phases considered by the model. Agro-IBIS showed a tendency to overestimate the duration of the growth stages between 3% and 16%, but underestimated by 8% the duration of the panicle formation phase in one growing season. The new irrigation model is based on the water balance at the surface and applies irrigation in order to keep the water layer at the paddy field always in the optimum level. A set of climate projections from global climate models under two emission scenarios, and excluding and considering CO2 fertilizations effects, was used to drive the updated Agro-IBIS to estimate the effects of climate change on rice phenology, productivity and irrigation demand in southern Brazil during the 21st century. The results suggest that rice yields in southern Brazil can increase in average by 10-30%, but by up to 80% in regions where the current temperature is below optimum for rice growth and therefore will be benefited by warming. However, the same region might experience higher water demand for rice irrigation, which might pose a challenge for rice production in that region.

75 FR 68430 - Domestic Shipping Services Pricing and Mailing Standards Changes

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-08

... has eliminated the requirement for a postal routing barcode when paying postage with permit imprint... minimum volume threshold applies, except the permit imprint requirement of 200 pieces or 50 pounds of mail... permit imprint. Customers using USPS-approved IBI postage meters that print the IBI with the appropriate...

Gene integrated set profile analysis: a context-based approach for inferring biological endpoints

PubMed Central

Kowalski, Jeanne; Dwivedi, Bhakti; Newman, Scott; Switchenko, Jeffery M.; Pauly, Rini; Gutman, David A.; Arora, Jyoti; Gandhi, Khanjan; Ainslie, Kylie; Doho, Gregory; Qin, Zhaohui; Moreno, Carlos S.; Rossi, Michael R.; Vertino, Paula M.; Lonial, Sagar; Bernal-Mizrachi, Leon; Boise, Lawrence H.

2016-01-01

The identification of genes with specific patterns of change (e.g. down-regulated and methylated) as phenotype drivers or samples with similar profiles for a given gene set as drivers of clinical outcome, requires the integration of several genomic data types for which an ‘integrate by intersection’ (IBI) approach is often applied. In this approach, results from separate analyses of each data type are intersected, which has the limitation of a smaller intersection with more data types. We introduce a new method, GISPA (Gene Integrated Set Profile Analysis) for integrated genomic analysis and its variation, SISPA (Sample Integrated Set Profile Analysis) for defining respective genes and samples with the context of similar, a priori specified molecular profiles. With GISPA, the user defines a molecular profile that is compared among several classes and obtains ranked gene sets that satisfy the profile as drivers of each class. With SISPA, the user defines a gene set that satisfies a profile and obtains sample groups of profile activity. Our results from applying GISPA to human multiple myeloma (MM) cell lines contained genes of known profiles and importance, along with several novel targets, and their further SISPA application to MM coMMpass trial data showed clinical relevance. PMID:26826710

Biological assessment of the lower Boise River, October 1995 through January 1998, Ada and Canyon Counties, Idaho

USGS Publications Warehouse

Mullins, William H.

1999-01-01

The lower Boise River, between Lucky Peak Dam and the mouth of the river near Parma, Idaho, is adversely affected by various land- and water-use activities. To assess the biotic integrity of the river and the effects of environmental perturbations on aquatic community structure, and to provide a baseline from which to identify future changes in habitat conditions, biological data were collected from October 1995 through January 1998 and evaluated using protocols developed for the U.S. Geological Survey National Water-Quality Assessment Program. Aquatic biological communities were sampled according to the following schedule: epilithic periphyton were collected in October 1995, October 1996, and August 1997; benthic macroinvertebrates were collected in October 1995, 1996, and 1997; and fish were collected in December 1996 and August 1997. Qualitative measurements of instream and riparian habitat indicated an overall decrease in instream habitat quality in a downstream direction. Embeddedness was high at all sites but was lower at the Eckert Road site than at the downstream sites near Middleton and Parma. Silt/sand substrate increased from 17 percent at the Eckert Road site to 49 percent near the mouth of the river. The Eckert Road site had a mix of geomorphic channel units (pool/riffle/run), whereas the Middleton and Parma sites were dominated by runs with very little pool or riffle habitat. Epilithic periphyton chlorophyll-a and ashfree dry weight values tended to increase downstream to the Middleton site and decrease from Middleton to the downstream sites near Caldwell and near Parma. Benthic index of biotic integrity (B-IBI) scores for macroinvertebrates collected in 1995, 1996, and 1997 were highest at the Eckert Road site and decreased at sites downstream. IBI scores for fish collected in 1996 were similar at the Glenwood Bridge and Middleton sites (17 and 16, respectively) and were indicative of a low to moderate level of disturbance. In contrast, the IBI score of 6 at the site near Parma was markedly lower and was indicative of more degraded conditions.

ARTiiFACT: a tool for heart rate artifact processing and heart rate variability analysis.

PubMed

Kaufmann, Tobias; Sütterlin, Stefan; Schulz, Stefan M; Vögele, Claus

2011-12-01

The importance of appropriate handling of artifacts in interbeat interval (IBI) data must not be underestimated. Even a single artifact may cause unreliable heart rate variability (HRV) results. Thus, a robust artifact detection algorithm and the option for manual intervention by the researcher form key components for confident HRV analysis. Here, we present ARTiiFACT, a software tool for processing electrocardiogram and IBI data. Both automated and manual artifact detection and correction are available in a graphical user interface. In addition, ARTiiFACT includes time- and frequency-based HRV analyses and descriptive statistics, thus offering the basic tools for HRV analysis. Notably, all program steps can be executed separately and allow for data export, thus offering high flexibility and interoperability with a whole range of applications.

Predicting relapse in major depressive disorder using patient-reported outcomes of depressive symptom severity, functioning, and quality of life in the Individual Burden of Illness Index for Depression (IBI-D).

PubMed

Ishak, Waguih William; Greenberg, Jared M; Cohen, Robert M

2013-10-01

Patients with Major Depressive Disorder (MDD) often experience unexpected relapses, despite achieving remission. This study examines the utility of a single multidimensional measure that captures variance in patient-reported Depressive Symptom Severity, Functioning, and Quality of Life (QOL), in predicting MDD relapse. Complete data from remitted patients at the completion of 12 weeks of citalopram in the STAR*D study were used to calculate the Individual Burden of Illness index for Depression (IBI-D), and predict subsequent relapse at six (n=956), nine (n=778), and twelve months (n=479) using generalized linear models. Depressive Symptom Severity, Functioning, and QOL were all predictors of subsequent relapse. Using Akaike information criteria (AIC), the IBI-D provided a good model for relapse even when Depressive Symptom Severity, Functioning, and QOL were combined in a single model. Specifically, an increase of one in the IBI-D increased the odds ratio of relapse by 2.5 at 6 months (β=0.921 ± 0.194, z=4.76, p<2 × 10(-6)), by 2.84 at 9 months (β=1.045 ± 0.22, z=4.74, p<2.2 × 10(-6)), and by 4.1 at 12 months (β=1.41 ± 0.29, z=4.79, p<1.7 × 10(-6)). Self-report poses a risk to measurement precision. Using highly valid and reliable measures could mitigate this risk. The IBI-D requires time and effort for filling out the scales and index calculation. Technological solutions could help ease these burdens. The sample suffered from attrition. Separate analysis of dropouts would be helpful. Incorporating patient-reported outcomes of Functioning and QOL in addition to Depressive Symptom Severity in the IBI-D is useful in assessing the full burden of illness and in adequately predicting relapse, in MDD. © 2013 Elsevier B.V. All rights reserved.

Validation of a predictive model for identifying febrile young infants with altered urinalysis at low risk of invasive bacterial infection.

PubMed

Velasco, R; Gómez, B; Hernández-Bou, S; Olaciregui, I; de la Torre, M; González, A; Rivas, A; Durán, I; Rubio, A

2017-02-01

In 2015, a predictive model for invasive bacterial infection (IBI) in febrile young infants with altered urine dipstick was published. The aim of this study was to externally validate a previously published set of low risk criteria for invasive bacterial infection in febrile young infants with altered urine dipstick. Retrospective multicenter study including nine Spanish hospitals. Febrile infants ≤90 days old with altered urinalysis (presence of leukocyturia and/or nitrituria) were included. According to our predictive model, an infant is classified as low-risk for IBI when meeting all the following: appearing well at arrival to the emergency department, being >21 days old, having a procalcitonin value <0.5 ng/mL and a C-reactive protein value <20 mg/L. IBI was considered as secondary to urinary tract infection if the same pathogen was isolated in the urine culture and in the blood or cerebrospinal fluid culture. A total of 391 patients with altered urine dipstick were included. Thirty (7.7 %) of them developed an IBI, with 26 (86.7 %) of them secondary to UTI. Prevalence of IBI was 2/104 (1.9 %; CI 95% 0.5-6.7) among low-risk patients vs 28/287 (9.7 %; CI 95% 6.8-13.7) among high-risk patients (p < 0.05). Sensitivity of the model was 93.3 % (CI 95% 78.7-98.2) and negative predictive value was 98.1 % (93.3-99.4). Although our predictive model was shown to be less accurate in the validation cohort, it still showed a good discriminatory ability to detect IBI. Larger prospective external validation studies, taking into account fever duration as well as the role of ED observation, should be undertaken before its implementation into clinical practice.

Publications - GMC 139 | Alaska Division of Geological & Geophysical

Science.gov Websites

and Facilities Staff Seismic and Well Data Data Reports Contact Us Frequently Asked Questions Ask a . OCS Y-0113-1 (Ibis #1) well Authors: Unknown Publication Date: 1989 Publisher: Alaska Division of of cuttings from the Arco Alaska Inc. OCS Y-0113-1 (Ibis #1) well: Alaska Division of Geological &

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.

PubMed

Li, Shengbin; Li, Bo; Cheng, Cheng; Xiong, Zijun; Liu, Qingbo; Lai, Jianghua; Carey, Hannah V; Zhang, Qiong; Zheng, Haibo; Wei, Shuguang; Zhang, Hongbo; Chang, Liao; Liu, Shiping; Zhang, Shanxin; Yu, Bing; Zeng, Xiaofan; Hou, Yong; Nie, Wenhui; Guo, Youmin; Chen, Teng; Han, Jiuqiang; Wang, Jian; Wang, Jun; Chen, Chen; Liu, Jiankang; Stambrook, Peter J; Xu, Ming; Zhang, Guojie; Gilbert, M Thomas P; Yang, Huanming; Jarvis, Erich D; Yu, Jun; Yan, Jianqun

2014-01-01

Nearly one-quarter of all avian species is either threatened or nearly threatened. Of these, 73 species are currently being rescued from going extinct in wildlife sanctuaries. One of the previously most critically-endangered is the crested ibis, Nipponia nippon. Once widespread across North-East Asia, by 1981 only seven individuals from two breeding pairs remained in the wild. The recovering crested ibis populations thus provide an excellent example for conservation genomics since every individual bird has been recruited for genomic and demographic studies. Using high-quality genome sequences of multiple crested ibis individuals, its thriving co-habitant, the little egret, Egretta garzetta, and the recently sequenced genomes of 41 other avian species that are under various degrees of survival threats, including the bald eagle, we carry out comparative analyses for genomic signatures of near extinction events in association with environmental and behavioral attributes of species. We confirm that both loss of genetic diversity and enrichment of deleterious mutations of protein-coding genes contribute to the major genetic defects of the endangered species. We further identify that genetic inbreeding and loss-of-function genes in the crested ibis may all constitute genetic susceptibility to other factors including long-term climate change, over-hunting, and agrochemical overuse. We also establish a genome-wide DNA identification platform for molecular breeding and conservation practices, to facilitate sustainable recovery of endangered species. These findings demonstrate common genomic signatures of population decline across avian species and pave a way for further effort in saving endangered species and enhancing conservation genomic efforts.

Heart Rate and Systolic Blood Pressure Variability in the Time Domain in Patients with Recent and Long-Standing Diabetes Mellitus

PubMed Central

Rivera, Ana Leonor; Estañol, Bruno; Sentíes-Madrid, Horacio; Fossion, Ruben; Toledo-Roy, Juan C.; Mendoza-Temis, Joel; Morales, Irving O.; Landa, Emmanuel; Robles-Cabrera, Adriana; Moreno, Rene; Frank, Alejandro

2016-01-01

Diabetes Mellitus (DM) affects the cardiovascular response of patients. To study this effect, interbeat intervals (IBI) and beat-to-beat systolic blood pressure (SBP) variability of patients during supine, standing and controlled breathing tests were analyzed in the time domain. Simultaneous noninvasive measurements of IBI and SBP for 30 recently diagnosed and 15 long-standing DM patients were compared with the results for 30 rigorously screened healthy subjects (control). A statistically significant distinction between control and diabetic subjects was provided by the standard deviation and the higher moments of the distributions (skewness, and kurtosis) with respect to the median. To compare IBI and SBP for different populations, we define a parameter, α, that combines the variability of the heart rate and the blood pressure, as the ratio of the radius of the moments for IBI and the same radius for SBP. As diabetes evolves, α decreases, standard deviation of the IBI detrended signal diminishes (heart rate signal becomes more “rigid”), skewness with respect to the median approaches zero (signal fluctuations gain symmetry), and kurtosis increases (fluctuations concentrate around the median). Diabetes produces not only a rigid heart rate, but also increases symmetry and has leptokurtic distributions. SBP time series exhibit the most variable behavior for recently diagnosed DM with platykurtic distributions. Under controlled breathing, SBP has symmetric distributions for DM patients, while control subjects have non-zero skewness. This may be due to a progressive decrease of parasympathetic and sympathetic activity to the heart and blood vessels as diabetes evolves. PMID:26849653

Heart Rate and Systolic Blood Pressure Variability in the Time Domain in Patients with Recent and Long-Standing Diabetes Mellitus.

PubMed

Rivera, Ana Leonor; Estañol, Bruno; Sentíes-Madrid, Horacio; Fossion, Ruben; Toledo-Roy, Juan C; Mendoza-Temis, Joel; Morales, Irving O; Landa, Emmanuel; Robles-Cabrera, Adriana; Moreno, Rene; Frank, Alejandro

2016-01-01

Diabetes Mellitus (DM) affects the cardiovascular response of patients. To study this effect, interbeat intervals (IBI) and beat-to-beat systolic blood pressure (SBP) variability of patients during supine, standing and controlled breathing tests were analyzed in the time domain. Simultaneous noninvasive measurements of IBI and SBP for 30 recently diagnosed and 15 long-standing DM patients were compared with the results for 30 rigorously screened healthy subjects (control). A statistically significant distinction between control and diabetic subjects was provided by the standard deviation and the higher moments of the distributions (skewness, and kurtosis) with respect to the median. To compare IBI and SBP for different populations, we define a parameter, α, that combines the variability of the heart rate and the blood pressure, as the ratio of the radius of the moments for IBI and the same radius for SBP. As diabetes evolves, α decreases, standard deviation of the IBI detrended signal diminishes (heart rate signal becomes more "rigid"), skewness with respect to the median approaches zero (signal fluctuations gain symmetry), and kurtosis increases (fluctuations concentrate around the median). Diabetes produces not only a rigid heart rate, but also increases symmetry and has leptokurtic distributions. SBP time series exhibit the most variable behavior for recently diagnosed DM with platykurtic distributions. Under controlled breathing, SBP has symmetric distributions for DM patients, while control subjects have non-zero skewness. This may be due to a progressive decrease of parasympathetic and sympathetic activity to the heart and blood vessels as diabetes evolves.

Attractor structure discriminates sleep states: recurrence plot analysis applied to infant breathing patterns.

PubMed

Terrill, Philip Ian; Wilson, Stephen James; Suresh, Sadasivam; Cooper, David M; Dakin, Carolyn

2010-05-01

Breathing patterns are characteristically different between infant active sleep (AS) and quiet sleep (QS), and statistical quantifications of interbreath interval (IBI) data have previously been used to discriminate between infant sleep states. It has also been identified that breathing patterns are governed by a nonlinear controller. This study aims to investigate whether nonlinear quantifications of infant IBI data are characteristically different between AS and QS, and whether they may be used to discriminate between these infant sleep states. Polysomnograms were obtained from 24 healthy infants at six months of age. Periods of AS and QS were identified, and IBI data extracted. Recurrence quantification analysis (RQA) was applied to each period, and recurrence calculated for a fixed radius in the range of 0-8 in steps of 0.02, and embedding dimensions of 4, 6, 8, and 16. When a threshold classifier was trained, the RQA variable recurrence was able to correctly classify 94.3% of periods in a test dataset. It was concluded that RQA of IBI data is able to accurately discriminate between infant sleep states. This is a promising step toward development of a minimal-channel automatic sleep state classification system.

Quantification of fetal magnetoencephalographic activity in low-risk fetuses using burst duration and interburst interval.

PubMed

Vairavan, Srinivasan; Govindan, Rathinaswamy B; Haddad, Naim; Preissl, Hubert; Lowery, Curtis L; Siegel, Eric; Eswaran, Hari

2014-07-01

To identify quantitative MEG indices of spontaneous brain activity for fetal neurological maturation in normal pregnancies and examine the effect of fetal state on these indices. Spontaneous MEG brain activity was examined in 22 low-risk fetal recordings with gestational age (GA) ranging from 30 to 37 weeks. As major quantitative characteristics of spontaneous activity, burst duration (BD) and interburst interval (IBI) were studied in correlation with GA and fetal state. IBI showed a decrease with gestational age (-0.21 s/week, P=0.0031). This trend was only maintained in the quiet-sleep state. With respect to BD, no significant trends were detected with GA and state. IBI can be quantified as a fetal brain maturational parameter. The decrease in IBI over gestation was similar to the trend reported in the preterm neonatal EEG studies. Quiet sleep could be the optimal state to study such MEG maturational indices. With further investigation, indices extracted from spontaneous fetal brain activity may serve as an early warning for fetal neurological distress. Copyright © 2013 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights reserved.

Hydrologic, ecologic, and geomorphic responses of Brewery Creek to construction of a residential subdivision, Dane County, Wisconsin, 1999-2002

USGS Publications Warehouse

Selbig, William R.; Jopke, Peter L.; Marhshall, David W.; Sorge, Michael J.

2004-01-01

Other physical, biological, and ecological surveys including macroinvertebrates, fish, habitat, and geomorphology were done on segments of Brewery Creek affected by the study area. Macroinvertebrate sampling results (Hilsenhoff Biotic Index value, or HBI), on Brewery Creek ranged from 'very good' to 'good' water-quality with no appreciable differences during any phase of construction activity. Results for fish-community composition, however, were within the 'poor' range (Index of Biotic Integrity value, or IBI) during each year of testing. A general absence of intolerant species, with the exception of brown trout, reflects the low IBI values. Habitat values did not change significantly from preconstruction to postconstruction phases. Although installation of a double-celled culvert in Brewery Creek most likely altered the width-to-depth ratio in that reach, the overall habitat rating remained 'fair'. Fluvial geomorphology classifications including channel cross sections, bed- and bank-erosion surveys, and pebble counts did not indicate that stream geomorphic characteristics were altered by home-construction activity in the study area. Increases in fine-grained sediment at various cross sections were attributed to instream erosion processes, such as bank slumping, rather than increases in sediment delivery from the nearby construction site.

Simulated effects of nitrogen saturation the global carbon budget using the IBIS model

USGS Publications Warehouse

Lu, Xuehe; Jiang, Hong; Liu, Jinxun; Zhang, Xiuying; Jin, Jiaxin; Zhu, Qiuan; Zhang, Zhen; Peng, Changhui

2016-01-01

Over the past 100 years, human activity has greatly changed the rate of atmospheric N (nitrogen) deposition in terrestrial ecosystems, resulting in N saturation in some regions of the world. The contribution of N saturation to the global carbon budget remains uncertain due to the complicated nature of C-N (carbon-nitrogen) interactions and diverse geography. Although N deposition is included in most terrestrial ecosystem models, the effect of N saturation is frequently overlooked. In this study, the IBIS (Integrated BIosphere Simulator) was used to simulate the global-scale effects of N saturation during the period 1961–2009. The results of this model indicate that N saturation reduced global NPP (Net Primary Productivity) and NEP (Net Ecosystem Productivity) by 0.26 and 0.03 Pg C yr−1, respectively. The negative effects of N saturation on carbon sequestration occurred primarily in temperate forests and grasslands. In response to elevated CO2 levels, global N turnover slowed due to increased biomass growth, resulting in a decline in soil mineral N. These changes in N cycling reduced the impact of N saturation on the global carbon budget. However, elevated N deposition in certain regions may further alter N saturation and C-N coupling.

Pesticide mortality of young white-faced ibis in Texas

USGS Publications Warehouse

Flickinger, Edward L.; Meeker, D.L.

1972-01-01

The combination of the symptoms observed in sick and dying birds and the high brain residues in the three birds collected dying, as well as in two of the four collected dead, implicate dieldrin as at least one of the causes of mortality of young ibis at the Lavaca Bay colony. Mercury residues in the kidneys of all four dead young, including those with low brain residues of dieldrin, suggest that birds were exposed to mercury in rice fields and that mercury may also have contributed to the mortality. Since adult ibis normally feed their young on invertebrates collected in rice fields treated with aldrin and Ceresan L, the use of these rice pesticides appears to be a serious hazard to this species, and probably to other wild birds with similar habits.

Flat-Spectrum Radio Sources as Likely Counterparts of Unidentified INTEGRAL Sources (Research Note)

NASA Technical Reports Server (NTRS)

Molina, M.; Landi, R.; Bassani, L.; Malizia, A.; Stephen, J. B.; Bazzano, A.; Bird, A. J.; Gehrels, N.

2012-01-01

Many sources in the fourth INTEGRAL/IBIS catalogue are still unidentified since they lack an optical counterpart. An important tool that can help in identifying and classifying these sources is the cross-correlation with radio catalogues, which are very sensitive and positionally accurate. Moreover, the radio properties of a source, such as the spectrum or morphology, could provide further insight into its nature. In particular, flat-spectrum radio sources at high Galactic latitudes are likely to be AGN, possibly associated to a blazar or to the compact core of a radio galaxy. Here we present a small sample of 6 sources extracted from the fourth INTEGRAL/IBIS catalogue that are still unidentified or unclassified, but which are very likely associated with a bright, flat-spectrum radio object. To confirm the association and to study the source X-ray spectral parameters, we performed X-ray follow-up observations with Swift/XRT of all objects. We report in this note the overall results obtained from this search and discuss the nature of each individual INTEGRAL source. We find that 5 of the 6 radio associations are also detected in X-rays; furthermore, in 3 cases they are the only counterpart found. More specifically, IGR J06073-0024 is a flat-spectrum radio quasar at z = 1.08, IGR J14488-4008 is a newly discovered radio galaxy, while IGR J18129-0649 is an AGN of a still unknown type. The nature of two sources (IGR J07225-3810 and IGR J19386-4653) is less well defined, since in both cases we find another X-ray source in the INTEGRAL error circle; nevertheless, the flat-spectrum radio source, likely to be a radio loud AGN, remains a viable and, in fact, a more convincing association in both cases. Only for the last object (IGR J11544-7618) could we not find any convincing counterpart since the radio association is not an X-ray emitter, while the only X-ray source seen in the field is a G star and therefore unlikely to produce the persistent emission seen by INTEGRAL.

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental Contaminants and their Effects on Fish in the Mississippi River Basin

DTIC Science & Technology

2002-06-01

irrespective of species, is used as a health metric in the IBI (Karr, 1981; Leonard and Orth, 1986) and the estuarine biotic integrity index (EIB— Deegan and...gonadosomatic index: Comparative Biochemistry and Physiology, v. 73A, p. 31-39. Deegan , L.A., Finn, J.T., Ayvazian, S.G., Ryder- Kieffer, C.A., and...study: Aquatic Toxicology, v. 45, p. 223-239. Keith, R.F., Crummett, W., Deegan , J., Jr., Libby, R.A., Taylor, J.K., and Wentler, G., 1983, Principles

Analyzing the Effects of One-to-One Learning on Inquiry-Based Instruction

ERIC Educational Resources Information Center

Henderson-Rosser, Aleigha; Sauers, Nicholas J.

2017-01-01

This study examined the impact of a one-to-one iPad program on inquiry-based instruction (IBI) in an all-girls science, technology, engineering, and mathematics-focused school with 99% African American students. Case study research was used and included three teachers at the school for the purpose of this study. Data collection included pre- and…

Cannabinoid receptor antagonist-induced striated muscle toxicity and ethylmalonic-adipic aciduria in beagle dogs.

PubMed

Tomlinson, Lindsay; Tirmenstein, Mark A; Janovitz, Evan B; Aranibar, Nelly; Ott, Karl-Heinz; Kozlosky, John C; Patrone, Laura M; Achanzar, William E; Augustine, Karen A; Brannen, Kimberly C; Carlson, Kenneth E; Charlap, Jeffrey H; Dubrow, Katherine M; Kang, Liya; Rosini, Laura T; Panzica-Kelly, Julieta M; Flint, Oliver P; Moulin, Frederic J; Megill, John R; Zhang, Haiying; Bennett, Michael J; Horvath, Joseph J

2012-10-01

Ibipinabant (IBI), a potent cannabinoid-1 receptor (CB1R) antagonist, previously in development for the treatment of obesity, causes skeletal and cardiac myopathy in beagle dogs. This toxicity was characterized by increases in muscle-derived enzyme activity in serum and microscopic striated muscle degeneration and accumulation of lipid droplets in myofibers. Additional changes in serum chemistry included decreases in glucose and increases in non-esterified fatty acids and cholesterol, and metabolic acidosis, consistent with disturbances in lipid and carbohydrate metabolism. No evidence of CB1R expression was detected in dog striated muscle as assessed by polymerase chain reaction, immunohistochemistry, Western blot analysis, and competitive radioligand binding. Investigative studies utilized metabonomic technology and demonstrated changes in several intermediates and metabolites of fatty acid metabolism including plasma acylcarnitines and urinary ethylmalonate, methylsuccinate, adipate, suberate, hexanoylglycine, sarcosine, dimethylglycine, isovalerylglycine, and 2-hydroxyglutarate. These results indicated that the toxic effect of IBI on striated muscle in beagle dogs is consistent with an inhibition of the mitochondrial flavin-containing enzymes including dimethyl glycine, sarcosine, isovaleryl-CoA, 2-hydroxyglutarate, and multiple acyl-CoA (short, medium, long, and very long chain) dehydrogenases. All of these enzymes converge at the level of electron transfer flavoprotein (ETF) and ETF oxidoreductase. Urinary ethylmalonate was shown to be a biomarker of IBI-induced striated muscle toxicity in dogs and could provide the ability to monitor potential IBI-induced toxic myopathy in humans. We propose that IBI-induced toxic myopathy in beagle dogs is not caused by direct antagonism of CB1R and could represent a model of ethylmalonic-adipic aciduria in humans.

M aritrema corai n. sp. (Digenea: Microphallidae) from the white ibis Eudocimus albus (Linnaeus) (Aves: Threskiornithidae) in Mexico.

PubMed

Hernández-Orts, Jesús S; Pinacho-Pinacho, Carlos D; García-Varela, Martín; Kostadinova, Aneta

2016-02-01

M aritrema corai n. sp. is described based on material from the intestine of the white ibis Eudocimus albus (L.) (Threskiornithidae) in Mexico. The new species can be distinguished morphologically from all congeners by the unique combination of the following morphological features: a very long cirrus sac attenuated distally [cirrus sac to body length ratio 1:0.90-1.29 (mean 1:1.07)]; a large, elongate-oval seminal receptacle, located dorsally between the cirrus sac and ovary; and long, filiform, unarmed, evaginable cirrus. Phylogenetic analyses of 28S ribosomal DNA (rDNA) sequences for the new species and for Maritrema spp. and Microphallus spp. depicted strong support for the two genera (excluding Microphallus fusiformis) and revealed close relationships between Ma. corai n. sp. and the clade formed by Maritrema novaezealandense Martorelli, Fredensborg, Mouritsen & Poulin, 2004, Maritrema heardi (Kinsella & Deblock, 1994) and Maritrema cf. eroliae.

Improving decision making about clinical trial participation - a randomised controlled trial of a decision aid for women considering participation in the IBIS-II breast cancer prevention trial.

PubMed

Juraskova, I; Butow, P; Bonner, C; Bell, M L; Smith, A B; Seccombe, M; Boyle, F; Reaby, L; Cuzick, J; Forbes, J F

2014-07-08

Decision aids may improve informed consent in clinical trial recruitment, but have not been evaluated in this context. This study investigated whether decision aids (DAs) can reduce decisional difficulties among women considering participation in the International Breast Cancer Intervention Study-II (IBIS-II) trial. The IBIS-II trial investigated breast cancer prevention with anastrazole in two cohorts: women with increased risk (Prevention), and women treated for ductal carcinoma in situ (DCIS). Australia, New Zealand and United Kingdom participants were randomised to receive a DA (DA group) or standard trial consent materials (control group). Questionnaires were completed after deciding about participation in IBIS-II (post decision) and 3 months later (follow-up). Data from 112 Prevention and 34 DCIS participants were analysed post decision (73 DA; 73 control); 95 Prevention and 24 DCIS participants were analysed at follow-up (58 DA; 61 control). There was no effect on the primary outcome of decisional conflict. The DCIS-DA group had higher knowledge post decision, and the Prevention-DA group had lower decisional regret at follow-up. This was the first study to evaluate a DA in the clinical trial setting. The results suggest DAs can potentially increase knowledge and reduce decisional regret about clinical trial participation.

Environmental clustering of lakes to evaluate performance of a macrophyte index of biotic integrity

USGS Publications Warehouse

Vondracek, Bruce C.; Vondracek, Bruce; Hatch, Lorin K.

2013-01-01

Proper classification of sites is critical for the use of biological indices that can distinguish between natural and human-induced variation in biological response. The macrophyte-based index of biotic integrity was developed to assess the condition of Minnesota lakes in relation to anthropogenic stressors, but macrophyte community composition varies naturally across the state. The goal of the study was to identify environmental characteristics that naturally influence macrophyte index response and establish a preliminary lake classification scheme for biological assessment (bioassessment). Using a comprehensive set of environmental variables, we identified similar groups of lakes by clustering using flexible beta classification. Variance partitioning analysis of IBI response indicated that evaluating similar lake clusters could improve the ability of the macrophyte index to identify community change to anthropogenic stressors, although lake groups did not fully account for the natural variation in macrophyte composition. Diagnostic capabilities of the index could be improved when evaluating lakes with similar environmental characteristics, suggesting the index has potential for accurate bioassessment provided comparable groups of lakes are evaluated.

Effects of grade control structures on fish passage, biological assemblages, and hydraulic environments in western Iowa streams: a multidisciplinary review

USGS Publications Warehouse

Thomas, J.T.; Culler, M.E.; Dermisis, D.C.; Pierce, Clay; Papanicolaou, A.N.; Stewart, T.W.; Larson, C.J.

2011-01-01

Land use changes and channelization of streams in the deep loess region of western Iowa have led to stream channel incision, altered flow regimes, increased sediment inputs, decreased habitat diversity and reduced lateral connectivity of streams and floodplains. Grade control structures (GCSs) are built in streams to prevent further erosion, protect infrastructure and reduce sediment loads. However, GCS can have a detrimental impact on fisheries and biological communities. We review three complementary biological and hydraulic studies on the effects of GCS in these streams. GCS with steep (≥1:4 rise : run) downstream slopes severely limited fish passage, but GCS with gentle slopes (≤1:15) allowed greater passage. Fish assemblages were dominated by species tolerant of degradation, and Index of Biotic Integrity (IBI) scores were indicative of fair or poor biotic integrity. More than 50% of fish species had truncated distributions. After modification of GCS to reduce slopes and permit increased passage, IBI scores increased and several species were detected further upstream than before modification. Total macroinvertebrate density, biomass and taxonomic diversity and abundance of ecologically sensitive taxa were greater at GCS than in reaches immediately upstream, downstream or ≥1 km from GCS. A hydraulic study confirmed results from fish passage studies; minimum depths and maximum current velocities at GCS with gentle slopes (≤1:15) were more likely to meet minimum criteria for catfish passage than GCS with steeper slopes. Multidisciplinary approaches such as ours will increase understanding of GCS-associated factors influencing fish passage, biological assemblage structure and other ecological relationships in streams.

A Design Support Framework through Dynamic Deployment of Hypothesis and Verification in the Design Process

NASA Astrophysics Data System (ADS)

Nomaguch, Yutaka; Fujita, Kikuo

This paper proposes a design support framework, named DRIFT (Design Rationale Integration Framework of Three layers), which dynamically captures and manages hypothesis and verification in the design process. A core of DRIFT is a three-layered design process model of action, model operation and argumentation. This model integrates various design support tools and captures design operations performed on them. Action level captures the sequence of design operations. Model operation level captures the transition of design states, which records a design snapshot over design tools. Argumentation level captures the process of setting problems and alternatives. The linkage of three levels enables to automatically and efficiently capture and manage iterative hypothesis and verification processes through design operations over design tools. In DRIFT, such a linkage is extracted through the templates of design operations, which are extracted from the patterns embeded in design tools such as Design-For-X (DFX) approaches, and design tools are integrated through ontology-based representation of design concepts. An argumentation model, gIBIS (graphical Issue-Based Information System), is used for representing dependencies among problems and alternatives. A mechanism of TMS (Truth Maintenance System) is used for managing multiple hypothetical design stages. This paper also demonstrates a prototype implementation of DRIFT and its application to a simple design problem. Further, it is concluded with discussion of some future issues.

White-faced ibis DDE-related reproductive problems continue at Carson Lake, Nevada

USGS Publications Warehouse

Henny, C.J.; Herron, G.B.

1988-01-01

Organochlorine, mercury, and selenium contamination was studied in White-faced Ibis (Plegadis chihi) nesting at Carson Lake, Nevada in 1985 and 1986. DDE was detected in 138 of 140 eggs sampled. Eggshell thickness was negatively correlated with residues of DDE. DDE residues in ibis eggs, unlike residues in most other wading bird eggs from the Great Basin have not declined during the last decade. At DDE levels in eggs above 4 ppm (wet weight), clutch size and productivity decreased, and the incidence of cracked eggs increased. Assuming that 4 ppm DOE is the critical residue level, 40% of the nesting population in 1985 and 1986 was adversely impacted by DDE, with a net loss of 20% of the population' s expected .production. Most eggs containing high levels (up to 29 ppm) also contained DDT, which implies the source was recently-used DDT. No evidence of breeding ground DDE-DDT contamination was found.

Evaluation of magical thinking: validation of the Illusory Beliefs Inventory.

PubMed

Shihata, Sarah; Egan, Sarah J; Rees, Clare S

2014-01-01

Magical thinking has been related to obsessive-compulsive disorder; yet, little research has examined this construct in other anxiety disorders. The Illusory Beliefs Inventory (IBI) is a recently developed measure of magical thinking. The aim of this study was to investigate the psychometric properties of this new measure and to determine if magical thinking accounts for pathological worry beyond the well-researched constructs of intolerance of uncertainty (IU) and perfectionism. A sample of 502 participants completed an online survey. Confirmatory factor analysis identified a three-factor solution for the IBI, and the measure had good internal consistency (α = .92), test-retest reliability (r = .94) and discriminant validity. Magical thinking, IU, and perfectionism all predicted pathological worry; however, magical thinking accounted for less than 1% of unique variance in worry, suggesting that it is not strongly related to worry. Further investigation regarding the validity and clinical utility of the IBI is required.

Determining the impact of urban components on land surface temperature of Istanbul by using remote sensing indices.

PubMed

Bektaş Balçik, Filiz

2014-02-01

For the past 60 years, Istanbul has been experiencing an accelerated urban expansion. This urban expansion is leading to the replacement of natural surfaces by various artificial materials. This situation has a critical impact on the environment due to the alteration of heat energy balance. In this study, the effect upon the urban heat island (UHI) of Istanbul was analyzed using 2009 dated Landsat 5 Thematic Mapper (TM) data. An Index Based Built-up Index (IBI) was used to derive artificial surfaces in the study area. To produce the IBI index, Soil-Adjusted Vegetation Index, Normalized Difference Built-up Index, and Modified Normalized Difference Water Index were calculated. Land surface temperature (LST) distribution was derived from Landsat 5 TM images using a mono-window algorithm. In addition, 24 transects were selected, and different regression models were applied to explore the correlation between LST and IBI index. The results show that artificial surfaces have a positive exponential relationship with LST rather than a simple linear one. An ecological evaluation index of the region was calculated to explore the impact of both the vegetated land and the artificial surfaces on the UHI. Therefore, the quantitative relationship of urban components (artificial surfaces, vegetation, and water) and LST was examined using multivariate statistical analysis, and the correlation coefficient was obtained as 0.829. This suggested that the areas with a high rate of urbanization will accelerate the rise of LST and UHI in Istanbul.

Analyzing indicators of stream health for Minnesota streams

USGS Publications Warehouse

Singh, U.; Kocian, M.; Wilson, B.; Bolton, A.; Nieber, J.; Vondracek, B.; Perry, J.; Magner, J.

2005-01-01

Recent research has emphasized the importance of using physical, chemical, and biological indicators of stream health for diagnosing impaired watersheds and their receiving water bodies. A multidisciplinary team at the University of Minnesota is carrying out research to develop a stream classification system for Total Maximum Daily Load (TMDL) assessment. Funding for this research is provided by the United States Environmental Protection Agency and the Minnesota Pollution Control Agency. One objective of the research study involves investigating the relationships between indicators of stream health and localized stream characteristics. Measured data from Minnesota streams collected by various government and non-government agencies and research institutions have been obtained for the research study. Innovative Geographic Information Systems tools developed by the Environmental Science Research Institute and the University of Texas are being utilized to combine and organize the data. Simple linear relationships between index of biological integrity (IBI) and channel slope, two-year stream flow, and drainage area are presented for the Redwood River and the Snake River Basins. Results suggest that more rigorous techniques are needed to successfully capture trends in IBI scores. Additional analyses will be done using multiple regression, principal component analysis, and clustering techniques. Uncovering key independent variables and understanding how they fit together to influence stream health are critical in the development of a stream classification for TMDL assessment.

Simulated effects of nitrogen saturation on the global carbon budget using the IBIS model

PubMed Central

Lu, Xuehe; Jiang, Hong; Liu, Jinxun; Zhang, Xiuying; Jin, Jiaxin; Zhu, Qiuan; Zhang, Zhen; Peng, Changhui

2016-01-01

Over the past 100 years, human activity has greatly changed the rate of atmospheric N (nitrogen) deposition in terrestrial ecosystems, resulting in N saturation in some regions of the world. The contribution of N saturation to the global carbon budget remains uncertain due to the complicated nature of C-N (carbon-nitrogen) interactions and diverse geography. Although N deposition is included in most terrestrial ecosystem models, the effect of N saturation is frequently overlooked. In this study, the IBIS (Integrated BIosphere Simulator) was used to simulate the global-scale effects of N saturation during the period 1961–2009. The results of this model indicate that N saturation reduced global NPP (Net Primary Productivity) and NEP (Net Ecosystem Productivity) by 0.26 and 0.03 Pg C yr−1, respectively. The negative effects of N saturation on carbon sequestration occurred primarily in temperate forests and grasslands. In response to elevated CO2 levels, global N turnover slowed due to increased biomass growth, resulting in a decline in soil mineral N. These changes in N cycling reduced the impact of N saturation on the global carbon budget. However, elevated N deposition in certain regions may further alter N saturation and C-N coupling. PMID:27966643

Technologies in the evaluation of irritable bowel syndrome.

PubMed

Smout, A J P M; Azpiroz, F; Brummer, R-J; Coremans, G; Dapoigny, M; Müller-Lissner, S A; Pace, F; Stockbrügger, R M; Vatn, M; Whorwell, P J

2004-01-01

During a meeting in The Hague, The Netherlands, the IBiS Club evaluated the most important techniques that can be used in the investigation of irritable bowel syndrome, either in the context of scientific research or as a clinical diagnostic tool. In each of these, the relevance of findings made in irritable bowel syndrome was balanced against the applicability of the technique. The discussion of the group is summarized in this paper. Copyright 2004 S. Karger AG, Basel

Quality of life and illness costs in irritable bowel syndrome.

PubMed

Simrén, Magnus; Brazier, John; Coremans, Georges; Dapoigny, Michel; Müller-Lissner, Stefan A; Pace, Fabio; Smout, André J P M; Stockbrügger, Reinhold W; Vatn, Morten H; Whorwell, Peter J

2004-01-01

Quality of life is reduced in patients with irritable bowel syndrome, and the costs for this disease are substantial to society. During a meeting in London, UK, the IBiS club reviewed the literature on these subjects. Drawbacks and advantages with existing instruments to assess quality of life and costs were discussed and the clinical and scientific relevance of the current knowledge was assessed. A summary from the meeting is presented in this paper.

Organochlorine contaminants in white-faced ibis eggs in southern Texas

USGS Publications Warehouse

Custer, T.W.; Mitchell, C.A.

1989-01-01

White-faced ibis eggs collected from 2 colonies in southern Texas in 1985 had low mean concentrations of DDE. DDD, the only other organochlorine contaminant detected, was found in only 1 of 20 eggs. DDE concentrations in eggs were not significantly correlated with eggshell thickness. Mean DDE concentrations were significantly higher in eggs collected from nests where not all of the remaining eggs hatched than in eggs collected from nests where all the remaining eggs hatched.

Coarse-grained modeling of polyethylene melts: Effect on dynamics

DOE PAGES

Peters, Brandon L.; Salerno, K. Michael; Agrawal, Anupriya; ...

2017-05-23

The distinctive viscoelastic behavior of polymers results from a coupled interplay of motion on multiple length and time scales. Capturing the broad time and length scales of polymer motion remains a challenge. Using polyethylene (PE) as a model macromolecule, we construct coarse-grained (CG) models of PE with three to six methyl groups per CG bead and probe two critical aspects of the technique: pressure corrections required after iterative Boltzmann inversion (IBI) to generate CG potentials that match the pressure of reference fully atomistic melt simulations and the transferability of CG potentials across temperatures. While IBI produces nonbonded pair potentials thatmore » give excellent agreement between the atomistic and CG pair correlation functions, the resulting pressure for the CG models is large compared with the pressure of the atomistic system. We find that correcting the potential to match the reference pressure leads to nonbonded interactions with much deeper minima and slightly smaller effective bead diameter. However, simulations with potentials generated by IBI and pressure-corrected IBI result in similar mean-square displacements (MSDs) and stress autocorrelation functions G( t) for PE melts. While the time rescaling factor required to match CG and atomistic models is the same for pressure- and non-pressure-corrected CG models, it strongly depends on temperature. Furthermore, transferability was investigated by comparing the MSDs and stress autocorrelation functions for potentials developed at different temperatures.« less

Coarse-grained modeling of polyethylene melts: Effect on dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Peters, Brandon L.; Salerno, K. Michael; Agrawal, Anupriya

The distinctive viscoelastic behavior of polymers results from a coupled interplay of motion on multiple length and time scales. Capturing the broad time and length scales of polymer motion remains a challenge. Using polyethylene (PE) as a model macromolecule, we construct coarse-grained (CG) models of PE with three to six methyl groups per CG bead and probe two critical aspects of the technique: pressure corrections required after iterative Boltzmann inversion (IBI) to generate CG potentials that match the pressure of reference fully atomistic melt simulations and the transferability of CG potentials across temperatures. While IBI produces nonbonded pair potentials thatmore » give excellent agreement between the atomistic and CG pair correlation functions, the resulting pressure for the CG models is large compared with the pressure of the atomistic system. We find that correcting the potential to match the reference pressure leads to nonbonded interactions with much deeper minima and slightly smaller effective bead diameter. However, simulations with potentials generated by IBI and pressure-corrected IBI result in similar mean-square displacements (MSDs) and stress autocorrelation functions G( t) for PE melts. While the time rescaling factor required to match CG and atomistic models is the same for pressure- and non-pressure-corrected CG models, it strongly depends on temperature. Furthermore, transferability was investigated by comparing the MSDs and stress autocorrelation functions for potentials developed at different temperatures.« less

Improving decision making about clinical trial participation – a randomised controlled trial of a decision aid for women considering participation in the IBIS-II breast cancer prevention trial

PubMed Central

Juraskova, I; Butow, P; Bonner, C; Bell, M L; Smith, A B; Seccombe, M; Boyle, F; Reaby, L; Cuzick, J; Forbes, J F

2014-01-01

Background: Decision aids may improve informed consent in clinical trial recruitment, but have not been evaluated in this context. This study investigated whether decision aids (DAs) can reduce decisional difficulties among women considering participation in the International Breast Cancer Intervention Study-II (IBIS-II) trial. Methods: The IBIS-II trial investigated breast cancer prevention with anastrazole in two cohorts: women with increased risk (Prevention), and women treated for ductal carcinoma in situ (DCIS). Australia, New Zealand and United Kingdom participants were randomised to receive a DA (DA group) or standard trial consent materials (control group). Questionnaires were completed after deciding about participation in IBIS-II (post decision) and 3 months later (follow-up). Results: Data from 112 Prevention and 34 DCIS participants were analysed post decision (73 DA; 73 control); 95 Prevention and 24 DCIS participants were analysed at follow-up (58 DA; 61 control). There was no effect on the primary outcome of decisional conflict. The DCIS–DA group had higher knowledge post decision, and the Prevention-DA group had lower decisional regret at follow-up. Conclusions: This was the first study to evaluate a DA in the clinical trial setting. The results suggest DAs can potentially increase knowledge and reduce decisional regret about clinical trial participation. PMID:24892447

Is ideal body image related to obesity and lifestyle behaviours in African American adolescents?

PubMed

Chen, X; Wang, Y

2012-03-01

Childhood obesity epidemic has become a public health issue in the USA, especially among African American youths. Research on the association between ideal body image (IBI) and obesity and related lifestyle factors among African American children and adolescents is limited. Data collected from 402 low-income African American adolescents aged 10-14 years in four Chicago public schools were used. Questionnaires were used to assess IBI, weight perception, weight control practices, and self-efficacy towards food and physical activity. Body mass index was calculated using measured weight and height. Associations between IBI and weight perception, overweight/obesity and lifestyle behaviours were assessed using linear and logistic regression models. The most frequently chosen ideal body size was the fourth of eight silhouettes (from thinnest to heaviest) for boys (55%) and girls (49%). Overweight and obese girls selected larger ideal body figures than the others (trend test: P < 0.001). Compared with those with middle ideal body figures, girls who selected smaller ones were twice as likely to have an unhealthy diet as indicated by less fruit and milk consumption; the odds ratios (ORs) and 95% confidence intervals (95% CIs) were 2.40 (1.15-5.02) for fruits intake (

A Framework to Assess the Impacts of Climate Change on ...

EPA Pesticide Factsheets

Climate change is projected to alter watershed hydrology and potentially amplify nonpoint source pollution transport. These changes have implications for fish and macroinvertebrates, which are often used as measures of aquatic ecosystem health. By quantifying the risk of adverse impacts to aquatic ecosystem health at the reach-scale, watershed climate change adaptation strategies can be developed and prioritized. The objective of this research was to quantify the impacts of climate change on stream health in seven Michigan watersheds. A process-based watershed model, the Soil and Water Assessment Tool (SWAT), was linked to adaptive neuro-fuzzy inferenced (ANFIS) stream health models. SWAT models were used to simulate reach-scale flow regime (magnitude, frequency, timing, duration, and rate of change) and water quality variables. The ANFIS models were developed based on relationships between the in-stream variables and sampling points of four stream health indicators: the fish index of biotic integrity (IBI), macroinvertebrate family index of biotic integrity (FIBI), Hilsenhoff biotic index (HBI), and number of Ephemeroptera, Plecoptera, and Trichoptera (EPT) taxa. The combined SWAT-ANFIS models extended stream health predictions to all watershed reaches. A climate model ensemble from the Coupled Model Intercomparison Project Phase 5 (CMIP5) was used to develop projections of changes to flow regime (using SWAT) and stream health indicators (using ANFIS) from a ba

Image-based information, communication, and retrieval

NASA Technical Reports Server (NTRS)

Bryant, N. A.; Zobrist, A. L.

1980-01-01

IBIS/VICAR system combines video image processing and information management. Flexible programs require user to supply only parameters specific to particular application. Special-purpose input/output routines transfer image data with reduced memory requirements. New application programs are easily incorporated. Program is written in FORTRAN IV, Assembler, and OS JCL for batch execution and has been implemented on IBM 360.

The rectum: a window to irritable bowel syndrome?

PubMed

Coremans, G; Azpiroz, F; Collins, S; Dapoigny, M; Müller-Lissner, S A; Pace, F; Smout, A; Stockbrügger, R W; Whorwell, P J

2002-01-01

This report summarizes current concepts and information gathered to date about the rectum in the irritable bowel syndrome (IBS) that were presented at the 10th meeting of IBiS Club held in Leuven, Belgium. A working group of experts in the field of IBS discussed whether the rectum or the whole colon is the better site to test in IBS patients and provided suggestions for a number of areas where further advances are required. Copyright 2002 S. Karger AG, Basel

Statistical Analysis of Firearms/Toolmarks Interpretation of Cartridge Case Evidence Using IBIS and Bayesian Networks

DTIC Science & Technology

2015-10-24

reference material (SRM) was entered into IBIS 10 times by each of three users (EBF, RLJ, and EFL). Each of these users has more than 12 months...bullet leaves the muzzle. In a recoil action (locked breech) pistol, the barrel and slide are securely locked together at the moment of firing. They...travel backward together until the barrel unlocks, forced down by a link or inclined plane, and continues rearward under its own momentum. A

INTEGRAL hard X-ray spectra of the cosmic X-ray background and Galactic ridge emission

NASA Astrophysics Data System (ADS)

Türler, M.; Chernyakova, M.; Courvoisier, T. J.-L.; Lubiński, P.; Neronov, A.; Produit, N.; Walter, R.

2010-03-01

Aims: We derive the spectra of the cosmic X-ray background (CXB) and of the Galactic ridge X-ray emission (GRXE) in the ~20-200 keV range from the data of the IBIS instrument aboard the INTEGRAL satellite obtained during the four dedicated Earth-occultation observations in early 2006. Methods: We analyze the modulation of the IBIS/ISGRI detector counts induced by the passage of the Earth through the field of view of the instrument. Unlike previous studies, we do not fix the spectral shape of the various contributions, but model instead their spatial distribution and derive for each of them the expected modulation of the detector counts. The spectra of the diffuse emission components are obtained by fitting the normalizations of the model lightcurves to the observed modulation in different energy bins. Because of degeneracy, we guide the fits with a realistic choice of the input parameters and a constraint for spectral smoothness. Results: The obtained CXB spectrum is consistent with the historic HEAO-1 results and falls slightly below the spectrum derived with Swift/BAT. A 10% higher normalization of the CXB cannot be completely excluded, but it would imply an unrealistically high albedo of the Earth. The derived spectrum of the GRXE confirms the presence of a minimum around 80 keV with improved statistics and yields an estimate of ~0.6 M⊙ for the average mass of white dwarfs in the Galaxy. The analysis also provides updated normalizations for the spectra of the Earth's albedo and the cosmic-ray induced atmospheric emission. Conclusions: This study demonstrates the potential of INTEGRAL Earth-occultation observations to derive the hard X-ray spectra of three fundamental components: the CXB, the GRXE and the Earth emission. Further observations would be extremely valuable to confirm our results with improved statistics.

The Illusory Beliefs Inventory: a new measure of magical thinking and its relationship with obsessive compulsive disorder.

PubMed

Kingdon, Bianca L; Egan, Sarah J; Rees, Clare S

2012-01-01

Magical thinking has been proposed to have an aetiological role in obsessive compulsive disorder (OCD). To address the limitations of existing measures of magical thinking we developed and validated a new 24-item measure of magical thinking, the Illusory Beliefs Inventory (IBI). The validation sample comprised a total of 1194 individuals across two samples recruited via an Internet based survey. Factor analysis identified three subscales representing domains relevant to the construct of magical thinking: Magical Beliefs, Spirituality, and Internal State and Thought Action Fusion. The scale had excellent internal consistency and evidence of convergent and discriminant validity. Evidence of criterion-related concurrent validity confirmed that magical thinking is a cognitive domain associated with OCD and is largely relevant to neutralizing, obsessing and hoarding symptoms. It is important for future studies to extend the evidence of the psychometric properties of the IBI in new populations and to conduct longitudinal studies to examine the aetiological role of magical thinking.

Heart Activity and Autistic Behavior in Infants and Toddlers with Fragile X Syndrome

PubMed Central

Roberts, Jane E.; Tonnsen, Bridgette; Robinson, Ashley; Shinkareva, Svetlana V.

2014-01-01

The present study contrasted physiological arousal in infants and toddlers with fragile X syndrome to typically developing control participants and examined physiological predictors early in development to autism severity later in development in fragile X syndrome. Thirty-one males with fragile X syndrome (ages 8–40 months) and 25 age-matched control participants were included. The group with fragile X syndrome showed shorter interbeat intervals (IBIs), lower vagal tone (VT), and less modulation of IBI. Data suggested a nonlinear effect with IBI and autistic behavior; however, a linear effect with VT and autistic behavior emerged. These findings suggest that atypical physiological arousal emerges within the first year and predicts severity of autistic behavior in fragile X syndrome. These relationships are complex and dynamic, likely reflecting endogenous factors assumed to reflect atypical brain function secondary to reduced fragile X mental retardation protein. This research has important implications for the early identification and treatment of autistic behaviors in young children with fragile X syndrome. PMID:22515825

Effects of coalbed natural gas development on fish assemblages in tributary streams of the Powder and Tongue rivers

USGS Publications Warehouse

Davis, W.N.; Bramblett, R.G.; Zale, A.V.

2010-01-01

1. Extraction of coalbed natural gas (CBNG) often results in disposal of large quantities of CBNG product water, which may affect aquatic ecosystems. We evaluated the effects of CBNG development on fish assemblages in tributary streams of the Powder and Tongue rivers. We used treatment and control, impact versus reference sites comparisons, surveys of CBNG product-water streams and in situ fish survival approaches to determine if CBNG development affected fish assemblages.2. Several of our results suggested that CBNG development did not affect fish assemblages. Species richness and index of biotic integrity (IBI) scores were similar in streams with and streams without CBNG development, and overall biotic integrity was not related to the number or density of CBNG wells. Fish occurred in one stream that was composed largely or entirely of CBNG product water. Sentinel fish survived in cages at treatment sites where no or few fish were captured, suggesting that factors such as lack of stream connectivity rather than water quality limited fish abundance at these sites. Fish species richness did not differ significantly from 1994 to 2006 in comparisons of CBNG-developed and undeveloped streams. Biotic integrity declined from 1994 to 2006; however, declines occurred at both impact and reference sites, possibly because of long-term drought.3. Some evidence suggested that CBNG development negatively affected fish assemblages, or may do so over time. Specific conductivity was on average higher in treatment streams and was negatively related to biotic integrity. Four IBI species richness metrics were negatively correlated with the number or density of CBNG wells in the catchment above sampling sites. Bicarbonate, one of the primary ions in product water, was significantly higher in developed streams and may have limited abundance of longnose dace (Rhinichthys cataractae). Total dissolved solids, alkalinity, magnesium and sulphate were significantly higher in developed streams.4. Biological monitoring conducted before the development of CBNG, and continuing through the life of development and reclamation, together with data on the quantity, quality and fate of CBNG product water will allow robust assessment of potential effects of future CBNG development worldwide. ?? 2010 Blackwell Publishing Ltd.

Fish communities and related environmental conditions of the lower Boise River, southwestern Idaho, 1974-2004

USGS Publications Warehouse

MacCoy, Dorene E.

2006-01-01

Within the last century, the lower Boise River has been transformed from a meandering, braided, gravel-bed river that supported large runs of salmon to a channelized, regulated, urban river that provides flood control and irrigation water to more than 1,200 square miles of land. An understanding of the current status of the river's fish communities and related environmental conditions is important to support the ongoing management of the Boise River. Therefore, fish community data from the U.S. Geological Survey and the Idaho Department of Fish and Game collected since 1974 were analyzed to describe the status of fish communities in the lower Boise River. Each set of data was collected to address different study objectives, but is combined here to provide an overall distribution of fish in the lower Boise River over the last 30 years. Twenty-two species of fish in 7 families have been identified in the lower Boise River-3 salmonidae, trout and whitefish; 2 cottidae, sculpins; 3 catostomidae, suckers; 7 cyprinidae, minnows; 4 centrarchidae, sunfish; 2 ictaluridae, catfish; and 1 cobitidae, loach. Analysis of fish community data using an Index of Biotic Integrity (IBI) for Northwest rivers shows a decrease in the biotic integrity in a downstream direction, with the lowest IBI near the mouth of the Boise River. The number of tolerant and introduced fish were greater in the lower reaches of the river. Changes in land use, habitat, and water quality, as well as regulated streamflow have affected the lower Boise River fish community. IBI scores were negatively correlated with maximum instantaneous water temperature, specific conductance, and suspended sediment; as well as the basin land-use metrics, area of developed land, impervious surface area, and the number of major diversions upstream of a site. Fish communities in the upstream reaches were dominated by piscivorous fish, whereas the downstream reaches were dominated by tolerant, omnivorous fish. The percentage of sculpin in the river decreased in a downstream direction, and sculpin disappear completely at sites downstream of Glenwood Bridge. The sculpin population increased downstream of the Lander wastewater-treatment facility within the last decade, possibly as a result of improved wastewater treatment. The condition of the mountain whitefish (Prosopium williamsoni) throughout the lower Boise River was good and was similar both to the condition of mountain whitefish from least-disturbed rivers in southern Idaho and to the North American standard weight for mountain whitefish.

[Predictive model based multimetric index of macroinvertebrates for river health assessment].

PubMed

Chen, Kai; Yu, Hai Yan; Zhang, Ji Wei; Wang, Bei Xin; Chen, Qiu Wen

2017-06-18

Improving the stability of integrity of biotic index (IBI; i.e., multi-metric indices, MMI) across temporal and spatial scales is one of the most important issues in water ecosystem integrity bioassessment and water environment management. Using datasets of field-based macroinvertebrate and physicochemical variables and GIS-based natural predictors (e.g., geomorphology and climate) and land use variables collected at 227 river sites from 2004 to 2011 across the Zhejiang Province, China, we used random forests (RF) to adjust the effects of natural variations at temporal and spatial scales on macroinvertebrate metrics. We then developed natural variations adjusted (predictive) and unadjusted (null) MMIs and compared performance between them. The core me-trics selected for predictive and null MMIs were different from each other, and natural variations within core metrics in predictive MMI explained by RF models ranged between 11.4% and 61.2%. The predictive MMI was more precise and accurate, but less responsive and sensitive than null MMI. The multivariate nearest-neighbor test determined that 9 test sites and 1 most degraded site were flagged outside of the environmental space of the reference site network. We found that combination of predictive MMI developed by using predictive model and the nearest-neighbor test performed best and decreased risks of inferring type I (designating a water body as being in poor biological condition, when it was actually in good condition) and type II (designating a water body as being in good biological condition, when it was actually in poor condition) errors. Our results provided an effective method to improve the stability and performance of integrity of biotic index.

Organochlorine contaminants in white-faced ibis eggs in southern Texas

USGS Publications Warehouse

Custer, T.W.; Mitchell, C.A.

1989-01-01

White-faced Ibis (Plegadis chihi ) eggs collected from two colonies in southern Texas in 1985 had low mean concentrations of DDE (0.14-0.27 ppm wet weight). DDD, the only other organochlorine contaminant detected, was found in only 1 of 20 eggs. DDE concentrations in eggs were not significantly correlated with eggshell thickness. Mean DDE concentrations were significantly higher in eggs collected from nests where not all of the remaining eggs hatched (1.0 ppm) than in eggs collected from nests where all the remaining eggs hatched (0.15 ppm).

Swift/XRT detection of the hard X-ray source IGR J14549-6459

NASA Astrophysics Data System (ADS)

Fiocchi, M.; Bazzano, A.; Landi, R.; Bassani, L.; Gehrels, N.; Kennea, J.; Bird, A. J.

2010-04-01

We report the result of a short (900 sec) Swift/XRT observation of the field containing IGR J14549-6459, a new INTEGRAL source recently reported in the 4th IBIS catalogue (Bird et al. 2010, ApJS, 186, 1). The XRT data analysis is performed using the standard procedure described in details in Landi et al. 2010 (MNRAS, 403, 945). The XRT observation locates the X-ray counterpart of IGR J14549-6459 at RA(J2000)= 14h 55m 23.9s, Dec(J2000)= -65d 00m 03.2s with an error of 6".

On how Cattle Egret (Bubulcus ibis) spread to the Americas: meteorological tools to assess probable colonization trajectories.

PubMed

Massa, Carolina; Doyle, Moira; Fortunato, Roberta Callicó

2014-11-01

The Cattle Egret (Bubulcus ibis) is native to the old world. Before 1877 no Cattle Egrets had been sighted in the Americas. There are no written records of this species being transported to or escaping from captivity in South America and there is enough evidence to suggest that individuals are capable of making the crossing from Africa to the Americas unaided. Since long-distance movements of species are partly dependent on meteorological events we analyze the possibility of B. ibis crossing the Atlantic Ocean aided only by wind conditions evaluating existing theories and shedding light on their feasibility through the analysis of weather patterns and atmospheric circulation. Zonal and meridional wind components taken from the Twentieth Century Reanalysis Project were used to calculate trajectories between different points along the West African coast and South America between 1871 and 1920 in two seasons (March-April and September-October). From a total of 192,864 trajectories analyzed, 1,695 with origin in the west coast of Africa reached the NE coast of South America or the Caribbean islands in less than a week (successful trajectories). The probability of these successful trajectories originating in Central Africa was above 0.65 for the majority of the destinations analyzed. Particularly, in Guyana and Suriname where B. ibis was first sighted, the probability of the origin being Central Africa was 0.84, most of them occurring during March. Several weather events favored not only the colonization of the Cattle Egret but also its establishment and spread all throughout the Americas.

Effects of climate change on soil moisture over China from 1960-2006

USGS Publications Warehouse

Zhu, Q.; Jiang, H.; Liu, J.

2009-01-01

Soil moisture is an important variable in the climate system and it has sensitive impact on the global climate. Obviously it is one of essential components in the climate change study. The Integrated Biosphere Simulator (IBIS) is used to evaluate the spatial and temporal patterns of soil moisture across China under the climate change conditions for the period 1960-2006. Results show that the model performed better in warm season than in cold season. Mean errors (ME) are within 10% for all the months and root mean squared errors (RMSE) are within 10% except winter season. The model captured the spatial variability higher than 50% in warm seasons. Trend analysis based on the Mann-Kendall method indicated that soil moisture in most area of China is decreased especially in the northern China. The areas with significant increasing trends in soil moisture mainly locate at northwestern China and small areas in southeastern China and eastern Tibet plateau. ?? 2009 IEEE.

Community-level response of fishes and aquatic macroinvertebrates to stream restoration in a third-order tributary of the Potomac River, USA

USGS Publications Warehouse

Selego, S.M.; Rose, C.L.; Merovich, G.T.; Welsh, S.A.; Anderson, James T.

2012-01-01

Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010). Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI), the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions. Copyright ?? 2012 Stephen M. Selego et al.

Community-level response of fishes and aquatic macroinvertebrates to stream restoration in a third-order tributary of the Potomac River, USA

USGS Publications Warehouse

Selego, Stephen M.; Rose, Charnee L.; Merovich, George T.; Welsh, Stuart A.; Anderson, James T.

2012-01-01

Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010). Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI), the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

76 FR 9702 - Shortpaid and Unpaid Information-Based Indicia (IBI) Postage and Shortpaid Express Mail Postage...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-22

... days from the date that the Postal Service sends the revenue deficiency electronic notification to pay... associated with the mailpiece. After 14 days, if a mailer has not taken action to pay or dispute a revenue... associated with the mailpiece. After 7 days, if a mailer has not taken action to pay or appeal the revenue...

Relationship between perceived body image and recorded body mass index among Kuwaiti female university students.

PubMed

Kabir, Yearul; Zafar, Tasleem A; Waslien, Carol

2013-01-01

The associations between body image and attitudes toward obesity and thinness and their associations with measured body mass index (BMI) among female students of Kuwait University (n = 137) was examined in 2008. The body image perceptions were assessed using nine female silhouettes figures. The difference between current perceived body image (PBI) and ideal body image (IBI) was used as a measure of body image dissatisfaction (BID). Students tended to have a bigger PBI and smaller IBI than would be expected from their BMI category, leading to high levels of BID in each BMI category. PBI, IBI, BID, RBI were highly correlated with each other, and BMI was significantly correlated with each of them. The coefficients of these associations were not significantly altered in multiple regression analysis by the addition of potential confounding variables, such as age, marital status, physical activity, dieting behavior, parental education, and family size. These results suggest that PBI and a desire to be thinner were strongly related to BID and that thinness is becoming more desired in Kuwaiti society than the plump body image of the past.

The mineral resource potential of the Wadi al Jarir and Al Jurdhawiyah quadrangles, sheets 25/42C and 25/42D, Kingdom of Saudi Arabia

USGS Publications Warehouse

Fenton, Michael D.

1983-01-01

Areas with potential for metallic mineral deposits in the Wadi al Jarir and Al Jurdhawiyah quadrangles, northeastern Arabian Shield, have been identified by reconnaissance rock geochemistry, inspection of ancient prospects, and interpretation of previous work. The ancient prospects of Abraq Shawfan, Abraq Shawfan South, Ad Du'ibi, Ad Du'ibi West, and Ad Dirabi are not recommended for further study. The Bald al Jimalah East ancient lead-silver mine should be drilled to investigate its mineral potential at depth and to.determine its apparent relationship to the nearby Baid al Jimalah West tungsten-tin prospect. High precious metal and copper contents confirmed at the Jarrar ancient prospect suggest additional study. Preliminary results of core and percussion drilling at the Bald al Jimalah West tungsten-tin prospect indicate that the mineralized rocks decrease in grade with depth and are not suitable for current economic exploitation. Geochemically anomalous areas in both plutonic and layered volcanic and clastic terrane are possible sites of significant base metal, molybdenum, tin, tungsten, and rare-earth element mineralization.

Rapid diagnostic test for G6PD deficiency in Plasmodium vivax-infected men: a budget impact analysis based in Brazilian Amazon.

PubMed

Peixoto, Henry Maia; Brito, Marcelo Augusto Mota; Romero, Gustavo Adolfo Sierra; Monteiro, Wuelton Marcelo; de Lacerda, Marcus Vinícius Guimarães; de Oliveira, Maria Regina Fernandes

2017-01-01

The aim of this study was to estimate the incremental budget impact (IBI) of a rapid diagnostic test to detect G6PDd in male patients infected with Plasmodium vivax in the Brazilian Amazon, as compared with the routine protocol recommended in Brazil which does not include G6PDd testing. The budget impact analysis was performed from the perspective of the Brazilian health system, in the Brazilian Amazon for the years 2013, 2014 and 2015. The analysis used a decision model to compare two scenarios: the first consisting of the routine recommended in Brazil which does not include prior diagnosis of dG6PD, and the second based on the use of RDT CareStart™ G6PD (CS-G6PD) in all male subjects diagnosed with vivax malaria. The expected implementation of the diagnostic test was 30% in the first year, 70% the second year and 100% in the third year. The analysis identified negative IBIs which were progressively smaller in the 3 years evaluated. The sensitivity analysis showed that the uncertainties associated with the analytical model did not significantly affect the results. A strategy based on the use of CS-G6PD would result in better use of public resources in the Brazilian Amazon. © 2016 John Wiley & Sons Ltd.

Coarse graining of atactic polystyrene and its derivatives

NASA Astrophysics Data System (ADS)

Agrawal, Anupriya; Perahia, Dvora; Grest, Gary S.

2014-03-01

Capturing large length scales in polymers and soft matter while retaining atomistic properties is imperative to computational studies of dynamic systems. Here we present a new methodology developing coarse-grain model based on atomistic simulation of atactic polystyrene (PS). Similar to previous work by Fritz et al., each monomer is described by two coarse grained beads. In contrast to this earlier work where intramolecular potentials were based on Monte Carlo simulation of both isotactic and syndiotactic single PS molecule to capture stereochemistry, we obtained intramolecular interactions from a single molecular dynamics simulation of an all-atom atactic PS melts. The non-bonded interactions are obtained using the iterative Boltzmann inversion (IBI) scheme. This methodology has been extended to coarse graining of poly-(t-butyl-styrene) (PtBS). An additional coarse-grained bead is used to describe the t-butyl group. Similar to the process for PS, the intramolecular interactions are obtained from a single all atom atactic melt simulation. Starting from the non-bonded interactions for PS, we show that the IBI method for the non-bonded interactions of PtBS converges relatively fast. A generalized scheme for substituted PS is currently in development. We would like to acknowledge Prof. Kurt Kremer for helpful discussions during this work.

Landscape factors and hydrology influence mercury concentrations in wading birds breeding in the Florida Everglades, USA.

PubMed

Herring, Garth; Eagles-Smith, Collin A; Ackerman, Joshua T; Gawlik, Dale E; Beerens, James M

2013-08-01

The hydrology of wetland ecosystems is a key driver of both mercury (Hg) methylation and waterbird foraging ecology, and hence may play a fundamental role in waterbird exposure and risk to Hg contamination. However, few studies have investigated hydrological factors that influence waterbird Hg exposure. We examined how several landscape-level hydrological variables influenced Hg concentrations in great egret and white ibis adults and chicks in the Florida Everglades. The great egret is a visual "exploiter" species that tolerates lower prey densities and is less sensitive to hydrological conditions than is the white ibis, which is a tactile "searcher" species that pursues higher prey densities in shallow water. Mercury concentrations in adult great egrets were most influenced by the spatial region that they occupied in the Everglades (higher in the southern region); whereas the number of days a site was dry during the previous dry season was the most important factor influencing Hg concentrations in adult ibis (Hg concentrations increased with the number of days dry). In contrast, Hg concentrations in egret chicks were most influenced by calendar date (increasing with date), whereas Hg concentrations in ibis chicks were most influenced by chick age, region, and water recession rate (Hg concentrations decreased with age, were higher in the southern regions, and increased with positive water recession rates). Our results indicate that both recent (preceding two weeks) hydrological conditions, and those of the prior year, influence Hg concentrations in wading birds. Further, these results suggest that Hg exposure in wading birds is driven by complex relationships between wading bird behavior and life stage, landscape hydrologic patterns, and biogeochemical processes. Published by Elsevier B.V.

Landscape factors and hydrology influence mercury concentrations in wading birds breeding in the Florida Everglades, USA

USGS Publications Warehouse

Herring, Garth; Eagles-Smith, Collin A.; Ackerman, Joshua T.; Gawlik, Dale E.; Beerens, James M.

2013-01-01

The hydrology of wetland ecosystems is a key driver of both mercury (Hg) methylation and waterbird foraging ecology, and hence may play a fundamental role in waterbird exposure and risk to Hg contamination. However, few studies have investigated hydrological factors that influence waterbird Hg exposure. We examined how several landscape-level hydrological variables influenced Hg concentrations in great egret and white ibis adults and chicks in the Florida Everglades. The great egret is a visual “exploiter” species that tolerates lower prey densities and is less sensitive to hydrological conditions than is the white ibis, which is a tactile “searcher” species that pursues higher prey densities in shallow water. Mercury concentrations in adult great egrets were most influenced by the spatial region that they occupied in the Everglades (higher in the southern region); whereas the number of days a site was dry during the previous dry season was the most important factor influencing Hg concentrations in adult ibis (Hg concentrations increased with the number of days dry). In contrast, Hg concentrations in egret chicks were most influenced by calendar date (increasing with date), whereas Hg concentrations in ibis chicks were most influenced by chick age, region, and water recession rate (Hg concentrations decreased with age, were higher in the southern regions, and increased with positive water recession rates). Our results indicate that both recent (preceding two weeks) hydrological conditions, and those of the prior year, influence Hg concentrations in wading birds. Further, these results suggest that Hg exposure in wading birds is driven by complex relationships between wading bird behavior and life stage, landscape hydrologic patterns, and biogeochemical processes.

Monitoring the Crab Nebula with LOFT

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.

2012-01-01

From 2008-2010, the Crab Nebula was found to decline by 7% in the 15-50 keV band, consistently in Fermi GBM, INTEGRAL IBIS, SPI, and JEMX, RXTE PCA, and Swift BAT. From 2001-2010, the 15-50 keV flux from the Crab Nebula typically varied by about 3.5% per year. Analysis of RXTE PCA data suggests possible spectral variations correlated with the flux variations. I will present estimates of the LOFT sensitivity to these variations. Prior to 2001 and since 2010, the observed flux variations have been much smaller. Monitoring the Crab with the LOFT WFM and LAD will provide precise measurements of flux variations in the Crab Nebula if it undergoes a similarly active episode.

Dynamic RSA: Examining parasympathetic regulatory dynamics via vector-autoregressive modeling of time-varying RSA and heart period.

PubMed

Fisher, Aaron J; Reeves, Jonathan W; Chi, Cyrus

2016-07-01

Expanding on recently published methods, the current study presents an approach to estimating the dynamic, regulatory effect of the parasympathetic nervous system on heart period on a moment-to-moment basis. We estimated second-to-second variation in respiratory sinus arrhythmia (RSA) in order to estimate the contemporaneous and time-lagged relationships among RSA, interbeat interval (IBI), and respiration rate via vector autoregression. Moreover, we modeled these relationships at lags of 1 s to 10 s, in order to evaluate the optimal latency for estimating dynamic RSA effects. The IBI (t) on RSA (t-n) regression parameter was extracted from individual models as an operationalization of the regulatory effect of RSA on IBI-referred to as dynamic RSA (dRSA). Dynamic RSA positively correlated with standard averages of heart rate and negatively correlated with standard averages of RSA. We propose that dRSA reflects the active downregulation of heart period by the parasympathetic nervous system and thus represents a novel metric that provides incremental validity in the measurement of autonomic cardiac control-specifically, a method by which parasympathetic regulatory effects can be measured in process. © 2016 Society for Psychophysiological Research.

The transfer functions of cardiac tissue during stochastic pacing.

PubMed

de Lange, Enno; Kucera, Jan P

2009-01-01

The restitution properties of cardiac action potential duration (APD) and conduction velocity (CV) are important factors in arrhythmogenesis. They determine alternans, wavebreak, and the patterns of reentrant arrhythmias. We developed a novel approach to characterize restitution using transfer functions. Transfer functions relate an input and an output quantity in terms of gain and phase shift in the complex frequency domain. We derived an analytical expression for the transfer function of interbeat intervals (IBIs) during conduction from one site (input) to another site downstream (output). Transfer functions can be efficiently obtained using a stochastic pacing protocol. Using simulations of conduction and extracellular mapping of strands of neonatal rat ventricular myocytes, we show that transfer functions permit the quantification of APD and CV restitution slopes when it is difficult to measure APD directly. We find that the normally positive CV restitution slope attenuates IBI variations. In contrast, a negative CV restitution slope (induced by decreasing extracellular [K(+)]) amplifies IBI variations with a maximum at the frequency of alternans. Hence, it potentiates alternans and renders conduction unstable, even in the absence of APD restitution. Thus, stochastic pacing and transfer function analysis represent a powerful strategy to evaluate restitution and the stability of conduction.

Electrical properties of a novel 1,3-bis-(p-iminobenzoic acid) indane Langmuir-Blodgett films containing ZnS nanoparticles.

PubMed

Sari, H; Uzunoglu, T; Capan, R; Serin, N; Serin, T; Tarimci, C; Hassan, A K; Namli, H; Turhan, O

2007-08-01

ZnS nanoparticles have been formed in a newly synthesized 1,3-bis-(p-iminobenzoic acid) indane (IBI) by exposing Zn2+ doped multilayered Langmuir-Blodgett (LB) film to H2S gas after the growth. The formation of ZnS nanoparticles in the LB film structure was verified by measuring UV-Visible absorption spectra. DC electrical measurements were carried out for thin films of IBI prepared in a metal/LB films/metal sandwich structure with and without ZnS nanoparticles. It was observed that ZnS nanoparticles in the LB films cause a blue-shift in the absorption spectra as well as a decrease in both capacitance and conductivity values. By analysing I-V curves and assuming a Schottky conduction mechanism the barrier height was found to be about 1.13 eV and 1.21 eV for IBI LB films without and with ZnS nanoparticles, respectively. It is thought that the presence of ZnS nanoparticles influences the barrier height at the metal-organic film interface and causes a change in electrical conduction properties of LB films.

3C 279 IN OUTBURST IN 2015 JUNE: A BROADBAND SED STUDY BASED ON THE INTEGRAL DETECTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bottacini, Eugenio; Böttcher, Markus; Pian, Elena

2016-11-20

Blazars radiate from radio through gamma-ray frequencies and thereby make ideal targets for multifrequency studies. Such studies allow the properties of the emitting jet to be constrained. 3C 279 is among the most notable blazars and therefore subject to extensive multifrequency campaigns. We report the results of a campaign ranging from near-IR to gamma-ray energies that targeted an outburst of 3C 279 in 2015 June. The campaign pivots around the detection in only 50 ks by INTEGRAL , whose IBIS/ISGRI data pin down the high-energy component of the spectral energy distribution (SED) between Swift -XRT data and Fermi -LAT data. The overallmore » SED from near-IR to gamma rays can be well represented by either a leptonic or a lepto-hadronic radiation transfer model. Even though the data are equally well represented by the two models, their inferred parameters challenge the physical conditions in the jet. In fact, the leptonic model requires parameters with a magnetic field far below equipartition with the relativistic particle energy density. In contrast, equipartition may be achieved with the lepto-hadronic model, although this implies an extreme total jet power close to the Eddington luminosity.« less

Improvement in Mechanical Properties through Structural Hierarchies in Bio-Inspired Materials

DTIC Science & Technology

2011-02-01

alloys , ceramics and their composites which show improvement in one mechanical property (e.g. stiffness) at the cost of another disparate one (e.g... properties of their base constituents. This is in contrast to many engineering materials, such as metals, alloys , ceramics and their composites which show...mnechanical properties seen in many synthetic nanoma- Collagen (a) Ccellous bone Collagen Collagen Lamella fibr ibi Cortical nBone Osteon C Crystak H I nm

Modelling methane emissions from natural wetlands by development and application of the TRIPLEX-GHG model

USGS Publications Warehouse

Zhu, Qing; Liu, Jinxun; Peng, C.; Chen, H.; Fang, X.; Jiang, H.; Yang, G.; Zhu, D.; Wang, W.; Zhou, X.

2014-01-01

A new process-based model TRIPLEX-GHG was developed based on the Integrated Biosphere Simulator (IBIS), coupled with a new methane (CH4) biogeochemistry module (incorporating CH4 production, oxidation, and transportation processes) and a water table module to investigate CH4 emission processes and dynamics that occur in natural wetlands. Sensitivity analysis indicates that the most sensitive parameters to evaluate CH4 emission processes from wetlands are r (defined as the CH4 to CO2 release ratio) and Q10 in the CH4 production process. These two parameters were subsequently calibrated to data obtained from 19 sites collected from approximately 35 studies across different wetlands globally. Being heterogeneously spatially distributed, r ranged from 0.1 to 0.7 with a mean value of 0.23, and the Q10 for CH4 production ranged from 1.6 to 4.5 with a mean value of 2.48. The model performed well when simulating magnitude and capturing temporal patterns in CH4 emissions from natural wetlands. Results suggest that the model is able to be applied to different wetlands under varying conditions and is also applicable for global-scale simulations.

An integrated approach to modeling changes in land use, land cover, and disturbance and their impact on ecosystem carbon dynamics: a case study in the Sierra Nevada Mountains of California

USGS Publications Warehouse

Sleeter, Benjamin M.; Liu, Jinxun; Daniel, Colin; Frid, Leonardo; Zhu, Zhiliang

2015-01-01

Increased land-use intensity (e.g. clearing of forests for cultivation, urbanization), often results in the loss of ecosystem carbon storage, while changes in productivity resulting from climate change may either help offset or exacerbate losses. However, there are large uncertainties in how land and climate systems will evolve and interact to shape future ecosystem carbon dynamics. To address this we developed the Land Use and Carbon Scenario Simulator (LUCAS) to track changes in land use, land cover, land management, and disturbance, and their impact on ecosystem carbon storage and flux within a scenario-based framework. We have combined a state-and-transition simulation model (STSM) of land change with a stock and flow model of carbon dynamics. Land-change projections downscaled from the Intergovernmental Panel on Climate Change’s (IPCC) Special Report on Emission Scenarios (SRES) were used to drive changes within the STSM, while the Integrated Biosphere Simulator (IBIS) ecosystem model was used to derive input parameters for the carbon stock and flow model. The model was applied to the Sierra Nevada Mountains ecoregion in California, USA, a region prone to large wildfires and a forestry sector projected to intensify over the next century. Three scenario simulations were conducted, including a calibration scenario, a climate-change scenario, and an integrated climate- and land-change scenario. Based on results from the calibration scenario, the LUCAS age-structured carbon accounting model was able to accurately reproduce results obtained from the process-based biogeochemical model. Under the climate-only scenario, the ecoregion was projected to be a reliable net sink of carbon, however, when land use and disturbance were introduced, the ecoregion switched to become a net source. This research demonstrates how an integrated approach to carbon accounting can be used to evaluate various drivers of ecosystem carbon change in a robust, yet transparent modeling environment.

A Multimetric Benthic Macroinvertebrate Index for the Assessment of Stream Biotic Integrity in Korea

PubMed Central

Jun, Yung-Chul; Won, Doo-Hee; Lee, Soo-Hyung; Kong, Dong-Soo; Hwang, Soon-Jin

2012-01-01

At a time when anthropogenic activities are increasingly disturbing the overall ecological integrity of freshwater ecosystems, monitoring of biological communities is central to assessing the health and function of streams. This study aimed to use a large nation-wide database to develop a multimetric index (the Korean Benthic macroinvertebrate Index of Biological Integrity—KB-IBI) applicable to the biological assessment of Korean streams. Reference and impaired conditions were determined based on watershed, chemical and physical criteria. Eight of an initial 34 candidate metrics were selected using a stepwise procedure that evaluated metric variability, redundancy, sensitivity and responsiveness to environmental gradients. The selected metrics were number of taxa, percent Ephemeroptera-Plecoptera-Trichoptera (EPT) individuals, percent of a dominant taxon, percent taxa abundance without Chironomidae, Shannon’s diversity index, percent gatherer individuals, ratio of filterers and scrapers, and the Korean saprobic index. Our multimetric index successfully distinguished reference from impaired conditions. A scoring system was established for each core metric using its quartile range and response to anthropogenic disturbances. The multimetric index was classified by aggregating the individual metric ..scores and the value range was quadrisected to provide a narrative criterion (Poor, Fair, Good and Excellent) to describe the biological integrity of the streams in the study. A validation procedure showed that the index is an effective method for evaluating stream conditions, and thus is appropriate for use in future studies measuring the long-term status of streams, and the effectiveness of restoration methods. PMID:23202765

KSC-07pd0152

NASA Image and Video Library

2007-01-19

KENNEDY SPACE CENTER, FLA. -- In a marshy area of NASA's Kennedy Space Center, this white ibis may be looking for sticks to build its nest in a nearby tree. White ibis range from coastal South Carolina to Florida and Texas, as well as South America. They inhabit marshy sloughs, mud flats, lagoons and swamp forests. KSC shares a boundary with the Merritt Island Wildlife Nature Refuge. The refuge is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the Refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Ken Thornsley

KSC-07pd0768

NASA Image and Video Library

2007-04-02

KENNEDY SPACE CENTER, FLA. -- A white ibis stops on a fence rail in the Launch Complex 39 Area at NASA's Kennedy Space Center. White ibis range along the coast from South Carolina to Florida and Texas, as far as the northern area of South America. They prefer marshy sloughs, mud flats, lagoons and swamp forests. KSC shares a boundary with the Merritt Island National Wildlife Refuge, which surrounds it. The refuge is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Jim Grossmann

Iterative Overlap FDE for Multicode DS-CDMA

NASA Astrophysics Data System (ADS)

Takeda, Kazuaki; Tomeba, Hiromichi; Adachi, Fumiyuki

Recently, a new frequency-domain equalization (FDE) technique, called overlap FDE, that requires no GI insertion was proposed. However, the residual inter/intra-block interference (IBI) cannot completely be removed. In addition to this, for multicode direct sequence code division multiple access (DS-CDMA), the presence of residual interchip interference (ICI) after FDE distorts orthogonality among the spreading codes. In this paper, we propose an iterative overlap FDE for multicode DS-CDMA to suppress both the residual IBI and the residual ICI. In the iterative overlap FDE, joint minimum mean square error (MMSE)-FDE and ICI cancellation is repeated a sufficient number of times. The bit error rate (BER) performance with the iterative overlap FDE is evaluated by computer simulation.

KSC-07pd0870

NASA Image and Video Library

2007-04-11

KENNEDY SPACE CENTER, FLA. -- A white ibis looks for food from the edge of a sunken tree in the river near Kennedy Space Center. White ibis range along the coast from South Carolina to Florida and Texas, as far as the northern area of South America. They prefer marshy sloughs, mud flats, lagoons and swamp forests. KSC shares a boundary with the Merritt Island Wildlife Nature Refuge. The refuge is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the Refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Dimitri Gerondidakis

ESA's Integral solves thirty-year old gamma-ray mystery

NASA Astrophysics Data System (ADS)

Integral solves mystery hi-res Size hi-res: 60 kb Credits: Credit: ESA, F. Lebrun (CEA-Saclay). ESA's Integral solves thirty-year old gamma-ray mystery The central regions of our galaxy, the Milky Way, as seen by Integral in gamma rays. With its superior ability to see faint details, Integral correctly reveals the individual sources that comprised the foggy, gamma-ray background seen by previous observatories. The brightest 91 objects seen in this image were classified by Integral as individual sources, while the others appear too faint to be properly characterized at this stage. During the spring and autumn of 2003, Integral observed the central regions of our Galaxy, collecting some of the perpetual glow of diffuse low-energy gamma rays that bathe the entire Galaxy. These gamma rays were first discovered in the mid-1970s by high-flying balloon-borne experiments. Astronomers refer to them as the 'soft' Galactic gamma-ray background, with energies similar to those used in medical X-ray equipment. Initially, astronomers believed that the glow was caused by interactions involving the atoms of the gas that pervades the Galaxy. Whilst this theory could explain the diffuse nature of the emission, since the gas is ubiquitous, it failed to match the observed power of the gamma rays. The gamma rays produced by the proposed mechanisms would be much weaker than those observed. The mystery has remained unanswered for decades. Now Integral's superb gamma-ray telescope IBIS, built for ESA by an international consortium led by Principal Investigator Pietro Ubertini (IAS/CNR, Rome, Italy), has seen clearly that, instead of a fog produced by the interstellar medium, most of the gamma-rays are coming from individual celestial objects. In the view of previous, less sensitive instruments, these objects appeared to merge together. In a paper published today in "Nature", Francois Lebrun (CEA Saclay, Gif sur Yvette, France) and his collaborators report the discovery of 91 gamma-ray sources towards the direction of the Galactic centre. Lebrun's team includes Ubertini and seventeen other European scientists with long-standing experience in high-energy astrophysics. Much to the team's surprise, almost half of these sources do not fall in any class of known gamma-ray objects. They probably represent a new population of gamma-ray emitters. The first clues about a new class of gamma-ray objects came last October, when Integral discovered an intriguing gamma-ray source, known as IGRJ16318-4848. The data from Integral and ESA's other high-energy observatory XMM-Newton suggested that this object is a binary system, probably including a black hole or neutron star, embedded in a thick cocoon of cold gas and dust. When gas from the companion star is accelerated and swallowed by the black hole, energy is released at all wavelengths, mostly in the gamma rays. However, Lebrun is cautious to draw premature conclusions about the sources detected in the Galactic centre. Other interpretations are also possible that do not involve black holes. For instance, these objects could be the remains of exploded stars that are being energised by rapidly rotating celestial 'powerhouses', known as pulsars. Observations with another Integral instrument (SPI, the Spectrometer on Integral) could provide Lebrun and his team with more information on the nature of these sources. SPI measures the energy of incoming gamma rays with extraordinary accuracy and allows scientist to gain a better understanding of the physical mechanisms that generate them. However, regardless of the precise nature of these gamma-ray sources, Integral's observations have convincingly shown that the energy output from these new objects accounts for almost ninety per cent of the soft gamma-ray background coming from the centre of the Galaxy. This result raises the tantalising possibility that objects of this type hide everywhere in the Galaxy, not just in its centre. Again, Lebrun is cautious, saying, "It is tempting to think that we can simply extrapolate our results to the entire Galaxy. However, we have only looked towards its centre and that is a peculiar place compared to the rest." Next on Integral's list of things to do is to extend this work to the rest of the Galaxy. Christoph Winkler, ESA's Integral Project Scientist, says, "We now have to work on the whole disc region of the Galaxy. This will be a tough and long job for Integral. But at the end, the reward will be an exhaustive inventory of the most energetic celestial objects in the Galaxy." Note to editors The paper explaining these results will appear on the 18 March 2004 issue of "Nature". The author list includes F. Lebrun, R. Terrier, A. Bazzano, G. Belanger, A. Bird, L. Bouchet, A. Dean, M. Del Santo, A. Goldwurm, N. Lund, H. Morand, A. Parmar, J. Paul, J.-P. Roques, V. Schoenfelder, A. Strong, P. Ubertini, R. Walter and C. Winkler. For information about the related INTEGRAL and XMM-Newton discovery of IGRJ16318-4848, see: http://www.esa.int/esaSC/Pr_21_2003_s_en.html Integral The International Gamma Ray Astrophysics Laboratory (Integral) is the first space observatory that can simultaneously observe celestial objects in gamma rays, X-rays and visible light. Integral was launched on a Russian Proton rocket on 17 October 2002 into a highly elliptical orbit around Earth. Its principal targets include regions of the galaxy where chemical elements are being produced and compact objects, such as black holes. IBIS, Imager on Board the Integral Satellite - IBIS provides sharper gamma-ray images than any previous gamma-ray instrument. It can locate sources to a precision of 30 arcseconds, the equivalent of measuring the height of a person standing in a crowd, 1.3 kilometres away. The Principal Investigators that built the instrument are P. Ubertini (IAS/CNR, Rome, Italy), F. Lebrun (CEA Saclay, Gif sur Yvette, France), G. Di Cocco (ITESRE, Bologna, Italy). IBIS is equipped with the first un-cooled semiconductor gamma-ray camera, called ISGRI, which is responsible for its outstanding sensitivity. ISGRI was developed and built for ESA by CEA Saclay, France. SPI, Spectrometer on Integral - SPI measures the energy of incoming gamma rays with extraordinary accuracy. It is more sensitive to faint radiation than any previous gamma ray instrument and allows the precise nature of gamma ray sources to be determined. The Principal Investigators that developed SPI are J.-P. Roques, (CESR, Toulouse, France) and V. Schoenfelder (MPE, Garching, Germany). XMM-Newton XMM-Newton can detect more X-ray sources than any previous observatory and is helping to solve many cosmic mysteries of the violent Universe, from black holes to the formation of galaxies. It was launched on 10 December 1999, using an Ariane-5 rocket from French Guiana. Its orbit takes it almost a third of the way to the Moon, so that astronomers can enjoy long, uninterrupted views of celestial objects.

Prostate Cancer Skeletal Metastases: Pathobiology and Interventions

DTIC Science & Technology

2005-02-01

promoter-reporter vectors (Months 7-10). ii. Create and characterize activity of 50 bp deletion mutants based on information from Task Ibi (Months 11-14...iii. Clone into reporter vector and characterize activity of 50 bp fragment (from Task lbii) (Months 15-19). iv. Create and characterize activity of...Gowen M, Lazner F, Dodds R, Kapadia R, Feild J, Tavaria M, Bertoncello I, Drake F, Zavarselk S, Tellis I, Hertzog P, Debouck C, Kola I. Cathepsin K

Hard X-ray Variations in the Crab Nebula

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, M. L.; Case, G. L.; Baumgartner, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camero-Arranz, A.; Chaplin, V.; Connaughton, V.;

Hard X-ray Variations in the Crab Nebula

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, M. L.; Case, G. L.; Baumgartner, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camero-Arranz, A.; Connaughton, V.; Finger, M. H.;

A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105

PubMed Central

Iwasaka, Hiroaki; Satoh, Ryota; Nagano, Akiko; Watanabe, Kenshi; Hisata, Kanako; Satoh, Noriyuki

2018-01-01

Labyrinthulomycetes have been regarded as a promising industrial source of xanthophylls, including astaxanthin and canthaxanthin, polyunsaturated fatty acids such as docosahexaenoic acid and docosapentaenoic acid, ω-3 oils, and terpenic hydrocarbons, such as sterols and squalene. A Thraustochytrid, Aurantiochytrium sp. KH105 produces carotenoids, including astaxanthin, with strong antioxidant activity. To gain genomic insights into this capacity, we decoded its 97-Mbp genome and characterized genes for enzymes involved in carotenoid biosynthesis. Interestingly, all carotenogenic genes, as well as other eukaryotic genes, appeared duplicated, suggesting that this strain is diploid. In addition, among the five genes involved in the pathway from geranylgeranyl pyrophosphate to astaxanthin, geranylgeranyl phytoene synthase (crtB), phytoene desaturase (crtI) and lycopene cyclase (crtY) were fused into single gene (crtIBY) with no internal stop codons. Functionality of the trifunctional enzyme, CrtIBY, to catalyze the reaction from geranylgeranyl diphosphate to β-carotene was confirmed using a yeast assay system and mass spectrometry. Furthermore, analyses of differential gene expression showed characteristic up-regulation of carotenoid biosynthetic genes during stationary and starvation phases under these culture conditions. This suggests genetic engineering events to promote more efficient production of carotenoids. We also showed an occurrence of crtIBY in other Thraustochytrid species. PMID:29642531

A Possible Trifunctional β-Carotene Synthase Gene Identified in the Draft Genome of Aurantiochytrium sp. Strain KH105.

PubMed

Iwasaka, Hiroaki; Koyanagi, Ryo; Satoh, Ryota; Nagano, Akiko; Watanabe, Kenshi; Hisata, Kanako; Satoh, Noriyuki; Aki, Tsunehiro

2018-04-09

Labyrinthulomycetes have been regarded as a promising industrial source of xanthophylls, including astaxanthin and canthaxanthin, polyunsaturated fatty acids such as docosahexaenoic acid and docosapentaenoic acid, ω-3 oils, and terpenic hydrocarbons, such as sterols and squalene. A Thraustochytrid, Aurantiochytrium sp. KH105 produces carotenoids, including astaxanthin, with strong antioxidant activity. To gain genomic insights into this capacity, we decoded its 97-Mbp genome and characterized genes for enzymes involved in carotenoid biosynthesis. Interestingly, all carotenogenic genes, as well as other eukaryotic genes, appeared duplicated, suggesting that this strain is diploid. In addition, among the five genes involved in the pathway from geranylgeranyl pyrophosphate to astaxanthin, geranylgeranyl phytoene synthase ( crtB ), phytoene desaturase ( crtI ) and lycopene cyclase ( crtY ) were fused into single gene ( crtIBY ) with no internal stop codons. Functionality of the trifunctional enzyme, CrtIBY, to catalyze the reaction from geranylgeranyl diphosphate to β-carotene was confirmed using a yeast assay system and mass spectrometry. Furthermore, analyses of differential gene expression showed characteristic up-regulation of carotenoid biosynthetic genes during stationary and starvation phases under these culture conditions. This suggests genetic engineering events to promote more efficient production of carotenoids. We also showed an occurrence of crtIBY in other Thraustochytrid species.

Evaluating the performance of the breast cancer genetic risk models BOADICEA, IBIS, BRCAPRO and Claus for predicting BRCA1/2 mutation carrier probabilities: a study based on 7352 families from the German Hereditary Breast and Ovarian Cancer Consortium.

PubMed

Fischer, Christine; Kuchenbäcker, Karoline; Engel, Christoph; Zachariae, Silke; Rhiem, Kerstin; Meindl, Alfons; Rahner, Nils; Dikow, Nicola; Plendl, Hansjörg; Debatin, Irmgard; Grimm, Tiemo; Gadzicki, Dorothea; Flöttmann, Ricarda; Horvath, Judit; Schröck, Evelin; Stock, Friedrich; Schäfer, Dieter; Schwaab, Ira; Kartsonaki, Christiana; Mavaddat, Nasim; Schlegelberger, Brigitte; Antoniou, Antonis C; Schmutzler, Rita

2013-06-01

Risk prediction models are widely used in clinical genetic counselling. Despite their frequent use, the genetic risk models BOADICEA, BRCAPRO, IBIS and extended Claus model (eCLAUS), used to estimate BRCA1/2 mutation carrier probabilities, have never been comparatively evaluated in a large sample from central Europe. Additionally, a novel version of BOADICEA that incorporates tumour pathology information has not yet been validated. Using data from 7352 German families we estimated BRCA1/2 carrier probabilities under each model and compared their discrimination and calibration. The incremental value of using pathology information in BOADICEA was assessed in a subsample of 4928 pedigrees with available data on breast tumour molecular markers oestrogen receptor, progesterone receptor and human epidermal growth factor 2. BRCAPRO (area under receiver operating characteristic curve (AUC)=0.80 (95% CI 0.78 to 0.81)) and BOADICEA (AUC=0.79 (0.78-0.80)), had significantly higher diagnostic accuracy than IBIS and eCLAUS (p<0.001). The AUC increased when pathology information was used in BOADICEA: AUC=0.81 (95% CI 0.80 to 0.83, p<0.001). At carrier thresholds of 10% and 15%, the net reclassification index was +3.9% and +5.4%, respectively, when pathology was included in the model. Overall, calibration was best for BOADICEA and worst for eCLAUS. With eCLAUS, twice as many mutation carriers were predicted than observed. Our results support the use of BRCAPRO and BOADICEA for decision making regarding genetic testing for BRCA1/2 mutations. However, model calibration has to be improved for this population. eCLAUS should not be used for estimating mutation carrier probabilities in clinical settings. Whenever possible, breast tumour molecular marker information should be taken into account.

Land-Use Impacts on the Terrestrial Carbon Cycle: An Integrative Tool for Resource Assessment and Planning

NASA Astrophysics Data System (ADS)

Sleeter, B. M.; Liu, J.; Zhu, Z.; Hawbaker, T. J.

2014-12-01

Human land use and natural processes contribute to the ability of ecosystems to store and sequester carbon and offset greenhouse gas emissions. Changes in land use (e.g. agricultural cultivation, timber harvest, urban development, and other land management strategies) and natural processes (e.g. climate, wildfire, disease, storm, and insect outbreak) drive the dynamics of ecosystem carbon pools. These carbon dynamics operate at different spatial and temporal scales, making it challenging to track the changes in a single integrative framework. Landowners, managers, and policy makers require data, information, and tools on the relative contributions of these drivers of ecosystem carbon stocks and fluxes in order to evaluate alternative policies and management strategies designed to increase carbon storage and sequestration. In this paper we explore preliminary results from efforts to simulate changes in ecosystem carbon at ecoregional scales, resulting from anthropogenic land use, wildfire, natural vegetation change, and climate variability under a range of future conditions coherent with a range of global change scenarios. Simulations track the fate of carbon across several pools, including living biomass, deadwood, litter, soil, and wood products. Carbon fluxes are estimated based on simulations from the Integrated Biosphere Simulator model (IBIS). Downscaled land-use projections from the Special Report on Emission Scenarios and Representative Concentration Pathways drive changes in land use, along with extrapolations based on local-scale data. We discuss the sensitivity of the model to individual drivers, and the overall uncertainty associated with the wide range of scenario projections, as well as explore alternative policy and management outcomes and their ability to increase carbon storage in terrestrial ecosystems.

How is the surface Atlantic water inflow through the Gibraltar Strait forecasted? A lagrangian validation of operational oceanographic services in the Alboran Sea and the Western Mediterranean

NASA Astrophysics Data System (ADS)

Sotillo, M. G.; Amo-Baladrón, A.; Padorno, E.; Garcia-Ladona, E.; Orfila, A.; Rodríguez-Rubio, P.; Conti, D.; Madrid, J. A. Jiménez; de los Santos, F. J.; Fanjul, E. Alvarez

2016-11-01

An exhaustive validation of some of the operational ocean forecast products available in the Gibraltar Strait and the Alboran Sea is here presented. The skill of two ocean model solutions (derived from the Eulerian ocean forecast systems, such as the regional CMEMS IBI and the high resolution PdE SAMPA) in reproducing the complex surface dynamics in the above areas is evaluated. To this aim, in-situ measurements from the MEDESS-GIB drifter buoy database (comprising the Lagrangian positions, derived velocities and SST values) are used as the observational reference and the temporal coverage for the validation is 3 months (September to December 2014). Two metrics, a Lagrangian separation distance and a skill score, have been applied to evaluate the performance of the modelling systems in reproducing the observed trajectories. Furthermore, the SST validation with in-situ data is carried out by means of validating the model solutions with L3 satellite SST products. The Copernicus regional IBI products are evaluated in an extended domain, beyond the Alboran Sea, and covering western Mediterranean waters. This analysis reveals some strengths of the presented regional solution (i.e. realistic values of the Atlantic Jet in the Strait of Gibraltar area, realistic simulation of the Algerian Current). However, some shortcomings are also identified, with the major one being related to the simulated geographical position and intensity of the Alboran Gyres, particularly the western one. This performance limitation affects the IBI-modelled surface circulation in the entire Alboran Sea. On the other hand, the SAMPA system shows a more accurate model performance and it realistically reproduces the observed surface circulation in the area. The results reflect the effectiveness of the dynamical downscaling performed through the SAMPA system with respect to the regional IBI solution (in which SAMPA is nested), providing an objective measure of the potential added values introduced by the SAMPA downscaling solution in the Alboran Sea.

Spectroscopic measurements of soybeans used to parameterize physiological traits in the AgroIBIS ecosystem model

NASA Astrophysics Data System (ADS)

Singh, A.; Serbin, S.; Kucharik, C. J.; Townsend, P. A.

2014-12-01

Ecosystem models such AgroIBIS require detailed parameterizations of numerous vegetation traits related to leaf structure, biochemistry and photosynthetic capacity to properly assess plant carbon assimilation and yield response to environmental variability. In general, these traits are estimated from a limited number of field measurements or sourced from the literature, but rarely is the full observed range of variability in these traits utilized in modeling activities. In addition, pathogens and pests, such as the exotic soybean aphid (Aphis glycines), which affects photosynthetic pathways in soybean plants by feeding on phloem and sap, can potentially impact plant productivity and yields. Capturing plant responses to pest pressure in conjunction with environmental variability is of considerable interest to managers and the scientific community alike. In this research, we employed full-range (400-2500 nm) field and laboratory spectroscopy to rapidly characterize the leaf biochemical and physiological traits, namely foliar nitrogen, specific leaf area (SLA) and the maximum rate of RuBP carboxylation by the enzyme RuBisCo (Vcmax) in soybean plants, which experienced a broad range of environmental conditions and soybean aphid pressures. We utilized near-surface spectroscopic remote sensing measurements as a means to capture the spatial and temporal patterns of aphid impacts across broad aphid pressure levels. In addition, we used the spectroscopic data to generate a much larger dataset of key model parameters required by AgroIBIS than would be possible through traditional measurements of biochemistry and leaf-level gas exchange. The use of spectroscopic retrievals of soybean traits allowed us to better characterize the variability of plant responses associated with aphid pressure to more accurately model the likely impacts of soybean aphid on soybeans. Our next steps include the coupling of the information derived from our spectral measurements with the AgroIBIS model to project the impacts of increasing aphid pressures on yields expected with continued global change and altered environmental conditions.

Effect of contact lens wear and a near task on tear film break-up.

PubMed

Jansen, Meredith E; Begley, Carolyn G; Himebaugh, Nikole H; Port, Nicholas L

2010-05-01

To study the effect of extrinsic controls on blinking by examining blink parameters and tear stability among adapted soft contact lens (CL) wearers performing tasks that require varying amounts of visual concentration. The Demographic Questionnaire, Contact Lens Dry Eye Questionnaire, and Current Symptoms Questionnaire were completed by 15 adapted soft CL wearers (nine females). Three 55 s simultaneous measurements of tear film stability via retroillumination and blinking were obtained with a slit-lamp biomicroscope and 200 Hz video camera while subjects listened to music and played a video game with and without their habitual CLs. Interblink interval (IBI) and blink amplitude (BA) were calculated. The area of break-up (AB) was calculated for the retroillumination image before each blink. The Current Symptoms Questionnaire was completed four times throughout testing. With the game compared to music, IBI was significantly longer and BA significantly decreased without CLs (p < or = 0.001). With CLs, the IBI did not significantly change between tasks but the BA significantly decreased (p = 0.100). The AB significantly increased with CL and the game (paired t-test, p < or = 0.001). The BA was significantly correlated with self-reported severity of dry eye for all testing scenarios (Spearman r > or = 0.5579, p < 0.0001) and several symptom measures (Spearman r > or = 0.6262, p < 0.0001). The AB was significantly correlated with symptom measures including bothersome discomfort for the game with and without CLs (Spearman r > or = 0.5064, p < 0.0001). During tasks requiring concentration, the IBI increased (blink rate decreased) and many blinks were incomplete without CLs. With CLs, tear film instability increased. Blinking frequency also increased, but it remained high when subjects played the game, and symptoms of ocular irritation increased. This suggests that wearing soft CLs, even when fully adapted, provides enough extrinsic ocular surface stimulation to override internal controls and affect blink parameters.

Comparing simulated carbon budget of a Lei bamboo forest with flux tower data

USGS Publications Warehouse

Li, Xuehe; Jiang, Hong; Liu, Jinxun; Sun, Cheng; Wang, Ying; Jin, Jiaxin

2014-01-01

Bamboo forest ecosystem is the part of the forest ecosystem. The distribution area of bamboo forest is limited, but in somewhere, like south China, it has been cultivate for a long time with human management. As the climate change has been take great effect on forest carbon budget, many researchers pay attention to the carbon budget in bamboo forest. Moreover cultivative management had a significant impact on the bamboo forest carbon budget. In this study, we modified a terrestrial ecosystem model named Integrated Biosphere Simulator (IBIS) according the management of Lei bamboo forest. Some management, like fertilization, shoots harvesting and organic mulching in winter, had been incorporated into model. Then we had compared model results with the observation data from a Lei bamboo flux tower. The simulated and observed results had achieved good consistency. Our simulated Lei bamboo forest yearly net ecosystem productivity (NEP) was 0.41 kgC a-1 of carbon, which is very close to the observation data 0.45 kgC a-1 of carbon. And the monthly simulated results can take the change of carbon budget in each month, similar to the data we got from flux tower. It reflects that the modified IBIS model can characterize the growth of bamboo forest and perform the simulation well. And then two groups of simulations were set to evaluate effects of cultivative managements on Lei bamboo forests carbon budget. And results showed that both fertilization and organic mulching had taken positive effects on Lei bamboo forests carbon sequestration.

Industrial landfill affects on fish communities at Indiana Dunes National Lakeshore (INDU)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stewart, P.M.; Simon, T.P.

1995-12-31

INDU, an urban park near the third largest metropolitan area in the US, provides access to over two million visitors per year. The Grand Calumet River/Indiana Harbor Ship Canal is the only Area of Concern (AOC) with all 14 designated uses impaired. The Grand Calumet Lagoons are the former mouth of the Grand Calumet River and form part of the western boundary of INDU, adjacent to Gary, IN. An industrial landfill (slag and other industrial waste) forms the westernmost boundary of the lagoon and a dunal pond. A least-impacted lagoon and a pond lying across a dune ridge were comparedmore » to sites adjacent to the landfill. Fish communities censused from twelve sites during the summer of 1994 were analyzed for several community metrics including species richness and composition, trophic structure, and community and individual health. A modified headwater Index of Biotic Integrity (IBI) was utilized to evaluate lacustrine community health. Results include the first record of the Iowa darter (Etheostoma exile) found in northwest Indiana. Examination of the fish community found the least impacted lagoon to contain Erimyzon sucetta, Esox americanus, and Lepomis gulosus. The landfill lagoon lacked these species, with the exception of fewer L. gulosus, while Pimephales notatus was found at all sites in the impacted lake but not at all in the least impacted lagoon. Statistically significant differences in species diversity and IBI can be attributed to landfill proximity. Whole fish analyses of a benthic omnivore (Cyprinus carpio) revealed PAH levels near 1 mg/kg of total PAH in several fish analyzed.« less

Fish assemblages in a western Iowa stream modified by grade control structures

USGS Publications Warehouse

Litvan, M.E.; Pierce, C.L.; Stewart, T.W.; Larson, C.J.

2008-01-01

Over 400 riprap grade control structures (GCSs) have been built in streams of western Iowa to reduce erosion and protect bridges, roads, and farmland. In conjunction with a companion study evaluating fish passage over GCSs in Turkey Creek, we evaluated the differences in fish assemblage and habitat characteristics in reaches immediately downstream from GCSs (GCS sites) and reaches at least 1 km from any GCS (non-GCS sites). The GCS sites were characterized by greater proportions of pool habitat, maximum depths, fish biomass, and abundance of juvenile largemouth bass Micropterus salmoides than were non-GCS sites. Index of biotic integrity (IBI) scores were poor or fair (<43 on a 0-100 scale) and not significantly different between the GCS and non-GCS sites. Additionally, we investigated both the longitudinal changes in fish assemblages in this GCS-fragmented stream and the changes in fish assemblages after slope modifications of three GCSs to facilitate fish passage. Thirteen fish species were present throughout the study area, whereas another 15 species exhibited truncated distributions not extending to the most upstream sampling location. After modification of the GCSs, IBI scores increased at seven of nine sites (mean increase =4.6 points). Also, channel catfish Ictalurus punctatus were detected 7.3 km upstream at sites where, 2 years before GCS modification, they had been absent from collections. Given the number and distribution of GCSs in western Iowa streams, understanding the effects of these structures is vital to the conservation and management of fish assemblages in this and other regions where GCSs or similar structures are used. ?? Copyright by the American Fisheries Society 2008.

Template Based Low Data Rate Speech Encoder

DTIC Science & Technology

1993-09-30

Nasality Distinguishes In/ from d/ 95.6 96.9 1m/ from /b/, etc. Sustention Distinguishes /f/ from /p/, $7.5 88.3 ibi from N/, Al from /0 8. etc. Sibilation...processor performs mainly Processor Workstation input/output (I/O) operations. The dynamic random access memory (DRAM) has 16 million bytes of...storage capacity. To execute the 800-b/s voice algorithm, the following amount of memory is needed: 5 MB for tables, 1.5 MB for it "program, and 30 KB for

Design to Cost and Life Cycle Cost.

DTIC Science & Technology

1980-07-01

The data are also based on a sample of reporting squadrons. Though the VAMOSC MS offers an excellent capability to deal with design-related issues...levels as predictions in the early design phase of a program. Figure 4 presents sample FY-78 costs from the VAMOSC MS report. The costs are on a cost...equlipmlent before attachlmenlt to adjacent sectionls. Ibis allows tile work tol be performed within thC reachl of tile most1 efficient equipment and w4ithl

Felicity Conditions for Human Skill Acquisition: Validating an AI (Artificial Intelligence)-Based Theory.

DTIC Science & Technology

1983-11-01

a stack, and productions are often not grouped into subroutines. For some reason, when psychologists think of temporary memory, whether for control ...Sierra cannot gcncrate. ’I7he third group contains 76 bug sets that have non -empty intersections with at least one bug set from Sierra’s predictions. This...that have non -empty intersections when interesected with at least one observed bug set. ’Ibis third group of bug sets is printed a little differently

Spectropolarimetry of the photosphere and the chromosphere with IBIS

NASA Astrophysics Data System (ADS)

Kleint, L.; Sainz Dalda, A.

2012-03-01

We have obtained quasi-simultaneous spectropolarimetric imaging observations of various chromospheric and photospheric features in the lines Fe I 6302 A, Ca II 8542 A, H-alpha 6563 A and Na I 5896 A with the IBIS instrument at Sac Peak. Our targets include the quiet Sun, pores, sunspots, and flaring regions and our goal is to analyze the 3D magnetic field structure of the solar atmosphere. We carry out NTLE inversions with the NICOLE code to investigate interpretation techniques for chromospheric spectropolarimetric observations. The very faint polarization signatures make chromospheric inversions of the quiet Sun challenging. On the other hand, they are quite pronounced during flares and show us that the chromospheric magnetic structure is seemingly unrelated to the photosphere during these events.

Spectropolarimetric Observations of a Small Active Region with IBIS

NASA Astrophysics Data System (ADS)

Tarr, Lucas; Judge, Philip G.

2014-06-01

We have used the Interferometric BI--dimensional Spectrograph (IBIS) instrument at the Dunn Solar Telescope to measure the polarimetric Stokes IQUV signals for the small active region, NOAA 11304. We used three lines generally corresponding to three atmospheric heights ranging from the photosphere to low corona: Fe I 6302Å, NaI 5896Å, and CaII 8542Å. Each set of profiles has been inverted using the NICOLE code to determine the vector magnetic field at the three heights throughout the field of view, or the line--of--sight field, as allowed by the level of polarization signal. Comparisons are made between the magnetic and thermal structures with the goal of constraining chromospheric models with the information obtained at multiple heights.

Fish communities of benchmark streams in agricultural areas of eastern Wisconsin

USGS Publications Warehouse

Sullivan, D.J.; Peterson, E.M.

1997-01-01

Fish communities were surveyed at 20 stream sites in agricultural areas in eastern Wisconsin in 1993 and 1995 as part of the National Water-Quality Assessment (NAWQA) Program. These streams, designated "benchmark streams," were selected for study because of their potential use as regional references for healthy streams in agricultural areas, based on aquatic communities, habitat, and water chemistry. The agricultural benchmark streams were selected from four physical settings, or relatively homogeneous units (RHU's), that differ in bedrock type, texture of surficial deposits, and land use. Additional data were collected along with the fish-community data, including measures of habitat, water chemistry, and population surveys of algae and benthic invertebrates. Of the 20 sites, 19 are classified as trout (salmonid) streams. Fish species that require cold or cool water were the most commonly collected. At least one species of trout was collected at 18 sites, and trout were the most abundant species at 13 sites. The species with the greatest collective abundance, and collected at 18 of the 20 sites, were mottled sculpin (Cottus bairdi), a coldwater species. The next most abundant species were brown trout (Salmo trutta), followed by brook trout (Salvelinusfontinalis), creek chub (Semotilus atromaculatus), and longnose dace (Rhinichthys cataractae). In all, 31 species of fish were collected. The number of species per stream ranged from 2 to 14, and the number of individuals collected ranged from 19 to 264. According to Index of Biotic Integrity (IBI) scores, 5 sites were rated excellent, 10 sites rated good, 4 rated fair, and 1 rated poor. The ratings of the five sites in the fair to poor range were low for various reasons. Two sites appeared to have more warmwater species than was ideal for a high-quality coldwater stream. One was sampled during high flow and the results may not be valid for periods of normal flow; the other may have been populated by migrating warmwater species. Two sites had insufficient deep-water habitat to support large numbers offish, especially top carnivores. Finally, one stream may be too cool to support enough warmwater species and too warm to support trout. In general, two methods of evaluating site habitat indicate that habitat is not a limiting factor for fish communities. However, two sites were rated as fair according to both habitat evaluation methods due to low base flow. Two sites rated below good according to one habitat evaluation method but rated good or excellent according to the other. Detrended correspondence analysis (DCA) of data for 17 sites showed three station groupings. These groupings fell along RHU divisions and each group was associated with one of three trout species. A species-richness gradient was evident on the station-ordination diagram. Intolerant species were associated with each grouping, a reflection of the generally high water quality at the sites. However, no significant differences were found between IBI scores or habitat indices among the site groupings. The DCA axis 1 and 2 scores correlated with average velocity and percent pool as well as RHU factors percent sandy surficial deposits, percent wetland, percent agriculture, and bedrock. Average velocity was highest at three sites which also had among the highest measured flow and largest drainage areas. Percent pool was generally lower at sites with smaller percentages of sandy surficial deposits, with one exception. The usefulness of ordination methods in conjunction with more traditional methods of defining biotic integrity (IB I) has been noted in previous studies. In this study, however, perhaps because of the relative homogeneity of the benchmark streams, the IBI did not correlate with the same kinds of factors as the DCA axis scores did. 

PROBING THE TRANSITION BETWEEN THE SYNCHROTRON AND INVERSE-COMPTON SPECTRAL COMPONENTS OF 1ES 1959+650

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bottacini, E.; Schady, P.; Rau, A.

1ES 1959+650 is one of the most remarkable high-peaked BL Lacertae objects (HBL). In 2002, it exhibited a TeV {gamma}-ray flare without a similar brightening of the synchrotron component at lower energies. This orphan TeV flare remained a mystery. We present the results of a multifrequency campaign, triggered by the INTEGRAL IBIS detection of 1ES 1959+650. Our data range from the optical to hard X-ray energies, thus covering the synchrotron and inverse-Compton components simultaneously. We observed the source with INTEGRAL, the Swift X-Ray Telescope, and the UV-Optical Telescope, and nearly simultaneously with a ground-based optical telescope. The steep spectral componentmore » at X-ray energies is most likely due to synchrotron emission, while at soft {gamma}-ray energies the hard spectral index may be interpreted as the onset of the high-energy component of the blazar spectral energy distribution (SED). This is the first clear measurement of a concave X-ray-soft {gamma}-ray spectrum for an HBL. The SED can be well modeled with a leptonic synchrotron self-Compton model. When the SED is fitted this model requires a very hard electron spectral index of q {approx} 1.85, possibly indicating the relevance of second-order Fermi acceleration.« less

Organochlorine residues and eggshell thinning in anhingas and waders

USGS Publications Warehouse

Ohlendorf, Harry M.; Klaas, Erwin E.; Kaiser, T. Earl; Southern, William E.

1978-01-01

Residues of organochlorine compounds occur commonly in environmental samples and have been associated with adverse effects in numerous avian species (Cooke 1973; L. F. Stickel 1973; W. H. Stickel 1975; Ohlendorf et al. 1977; H. M. Ohlendorf, R. W. Risebrough, and K. Vermeer, unpublished manuscript). The affected species are usually terminal consumers, generally those feeding on aquatic organisms (primarily fish) or birds. Brown Pelicans (Pelecanus occidentalis), Double-crested Cormorants (Phalacrocorax auritus), and certain herons are among the species that have exhibited shell thinning in some regions (see Ohlendorf et al. 1977 for review). In 1972, we began a study to determine: (1) geographic differences in the occurrence of environmental pollutants in Anhingas (Anhinga anhinga) and waders in the eastern United States; (2) differences in environmental pollutant levels among those species nesting at the same localities; and (3) whether eggshell thickness had changed since the widespread use of organochlorine pesticides began in the mid-1940's. The wader species included in our study were: Great Blue Heron (Ardea herodias), Green Heron (Butorides virescens), Little Blue Heron (Florida caerulea), Cattle Egret (Bubulcus ibis), Reddish Egret (Dichromanassa rufescens), Great Egret (Casmerodius albus), Snowy Egret (Egretta thula), Louisiana Heron (Hydranassa tricolor), Black-crowned Night Heron (Nycticorax nycticorax), Yellow-crowned Night Heron (Nyctanassa violacea), Least Bittern (Ixobrychus exilis), American Bittern (Botaurus lentiginosus), Wood Stork (Mycteria americana), Glossy Ibis (Plegadis falcinellus), White Ibis (Eudocimus albus), and Roseate Spoonbill (Ajaia ajaja).

Matching times of leading and following suggest cooperation through direct reciprocity during V-formation flight in ibis

PubMed Central

Voelkl, Bernhard; Portugal, Steven J.; Unsöld, Markus; Usherwood, James R.; Wilson, Alan M.; Fritz, Johannes

2015-01-01

One conspicuous feature of several larger bird species is their annual migration in V-shaped or echelon formation. When birds are flying in these formations, energy savings can be achieved by using the aerodynamic up-wash produced by the preceding bird. As the leading bird in a formation cannot profit from this up-wash, a social dilemma arises around the question of who is going to fly in front? To investigate how this dilemma is solved, we studied the flight behavior of a flock of juvenile Northern bald ibis (Geronticus eremita) during a human-guided autumn migration. We could show that the amount of time a bird is leading a formation is strongly correlated with the time it can itself profit from flying in the wake of another bird. On the dyadic level, birds match the time they spend in the wake of each other by frequent pairwise switches of the leading position. Taken together, these results suggest that bald ibis cooperate by directly taking turns in leading a formation. On the proximate level, we propose that it is mainly the high number of iterations and the immediacy of reciprocation opportunities that favor direct reciprocation. Finally, we found evidence that the animals' propensity to reciprocate in leading has a substantial influence on the size and cohesion of the flight formations. PMID:25646487

Matching times of leading and following suggest cooperation through direct reciprocity during V-formation flight in ibis.

PubMed

Voelkl, Bernhard; Portugal, Steven J; Unsöld, Markus; Usherwood, James R; Wilson, Alan M; Fritz, Johannes

2015-02-17

One conspicuous feature of several larger bird species is their annual migration in V-shaped or echelon formation. When birds are flying in these formations, energy savings can be achieved by using the aerodynamic up-wash produced by the preceding bird. As the leading bird in a formation cannot profit from this up-wash, a social dilemma arises around the question of who is going to fly in front? To investigate how this dilemma is solved, we studied the flight behavior of a flock of juvenile Northern bald ibis (Geronticus eremita) during a human-guided autumn migration. We could show that the amount of time a bird is leading a formation is strongly correlated with the time it can itself profit from flying in the wake of another bird. On the dyadic level, birds match the time they spend in the wake of each other by frequent pairwise switches of the leading position. Taken together, these results suggest that bald ibis cooperate by directly taking turns in leading a formation. On the proximate level, we propose that it is mainly the high number of iterations and the immediacy of reciprocation opportunities that favor direct reciprocation. Finally, we found evidence that the animals' propensity to reciprocate in leading has a substantial influence on the size and cohesion of the flight formations.

The Irrational Beliefs Inventory: psychometric properties and cross-cultural validation of its Arabic version.

PubMed

Al-Heeti, Khalaf N M; Hamid, Abdalla A R M; Alghorani, Mohammad A

2012-08-01

The purpose of this study was to examine the psychometric properties of the adapted Irrational Beliefs Inventory (IBI-34) and thus begin the process of assessing its adequacy for use in an Arab culture. The scale was translated and then administered to two samples of undergraduate students from the United Arab Emirates University. Data from 384 students were used in the main analysis, and data from 251 students were used for cross-validation. Principal components analysis (PCA) with varimax rotation followed by PCA with oblimin rotation yielded the same five components in both the main sample and the validation sample, thus consistent with the original Dutch study. Only 34 of the original 50 items were adequate to represent the five constructs. Cronbach's alpha coefficient for the overall scale was .76 and for the subscales ranged between .71 and .76, except for the Rigidity subscale, which was .54. The adapted IBI-34 correlated significantly and negatively with the General Health Questionnaire and Beck Depression Inventory, providing support for concurrent validity. Due to the non-significant differences between male and female participants on the total score of the IBI-34, the scale can be used for both sexes by summing across all items to give a total score that can be used as a general indicator of the irrational thinking.

Evaluation of long-term trends in hydrologic and water-quality conditions, and estimation of water budgets through 2013, Chester County, Pennsylvania

USGS Publications Warehouse

Sloto, Ronald A.; Reif, Andrew G.

2017-06-02

An evaluation of trends in hydrologic and water quality conditions and estimation of water budgets through 2013 was done by the U.S. Geological Survey in cooperation with the Chester County Water Resources Authority. Long-term hydrologic, meteorologic, and biologic data collected in Chester County, Pennsylvania, which included streamflow, groundwater levels, surface-water quality, biotic integrity, precipitation, and air temperature were analyzed to determine possible trends or changes in hydrologic conditions. Statistically significant trends were determined by applying the Kendall rank correlation test; the magnitudes of the trends were determined using the Sen slope estimator. Water budgets for eight selected watersheds were updated and a new water budget was developed for the Marsh Creek watershed. An average water budget for Chester County was developed using the eight selected watersheds and the new Marsh Creek water budget.Annual and monthly mean streamflow, base flow, and runoff were analyzed for trends at 10 streamgages. The periods of record at the 10 streamgages ranged from 1961‒2013 to 1988‒2013. The only statistically significant trend for annual mean streamflow was for West Branch Brandywine Creek near Honey Brook, Pa. (01480300) where annual mean streamflow increased 1.6 cubic feet per second (ft3/s) per decade. The greatest increase in monthly mean streamflow was for Brandywine Creek at Chadds Ford, Pa. (01481000) for December; the increase was 47 ft3/s per decade. No statistically significant trends in annual mean base flow or runoff were determined for the 10 streamgages. The greatest increase in monthly mean base flow was for Brandywine Creek at Chadds Ford, Pa. (01481000) for December; the increase was 26 ft3/s per decade.The magnitude of peaks greater than a base streamflow was analyzed for trends for 12 streamgages. The period of record at the 12 stream gages ranged from 1912‒2012 to 2004–11. Fifty percent of the streamgages showed a small statistically significant increase in peaks greater than the base streamflow. The greatest increase was for Brandywine Creek at Chadds Ford, Pa. (01481000) during 1962‒2012; the increase was 1.8 ft3/s per decade. There were no statistically significant trends in the number of floods equal to or greater than the 2-year recurrence interval flood flow.Twenty‒one monitoring wells were evaluated for statistically significant trends in annual mean water level, minimum annual water level, maximum annual water level, and annual range in water-level fluctuations. For four wells, a small statistically significant increase in annual mean water level was determined that ranged from 0.16 to 0.7 feet per decade. There was poor or no correlation between annual mean groundwater levels and annual mean streamflow and base flow. No correlation was determined between annual mean groundwater level and annual precipitation. Despite rapid population growth and land-use change since 1950, there appears to have been little or no detrimental effects on groundwater levels in 21 monitoring wells.Long-term precipitation and temperature data were available from the West Chester (1893‒2013) and Phoenixville, Pa. (1915‒2013) National Oceanic and Atmospheric Administration (NOAA) weather stations. No statistically significant trends in annual mean precipitation or annual mean temperature were determined for either station. Both weather stations had a significant decrease in the number of days per year with precipitation greater than or equal to 0.1 inch. Annual mean minimum and maximum temperatures from the NOAA Southeastern Piedmont Climate Division increased 0.2 degrees Fahrenheit (F) per decade between 1896 and 2014. The number of days with a maximum temperature equal to or greater than 90 degrees F increased at West Chester and decreased at Phoenixville. No statistically significant trend was determined for annual snowfall amounts.Data from 1974 to 2013 for three stream water-quality monitors in the Brandywine Creek watershed were evaluated. The monitors are on the West Branch Brandywine Creek at Modena, Pa. (01480617), East Branch Brandywine Creek below Downingtown, Pa. (01480870), and Brandywine Creek at Chadds Ford, Pa. (01481000). Statistically significant upward trends were determined for annual mean specific conductance at all three stations, indicating the total dissolved solids load has been increasing. If the current trend continues, the annual mean specific conductance could almost double from 1974 to 2050. The increase in specific conductance likely is due to increases in chloride concentrations, which have been increasing steadily over time at all three stations. No correlation was found between monthly mean specific conductance and monthly mean streamflow or base flow. Statistically significant upward trends in pH were determined for all three stations. Statistically significant upward trends in stream temperature were determined for East Branch Brandywine Creek below Downingtown, Pa. (01480870) and Brandywine Creek at Chadds Ford, Pa. (01481000). The stream water-quality data indicate substantial increases in the minimum daily dissolved oxygen concentrations in the Brandywine Creek over time.The Chester County Index of Biotic Integrity (CC-IBI) determined for 1998‒2013 was evaluated for the five biological sampling sites collocated with streamgages. CC-IBI scores are based on a 0‒100 scale with higher scores indicating better stream quality. Statistically significant upward trends in the CC-IBI were determined for West Branch Brandywine Creek at Modena, Pa. (01480617) and East Branch Brandywine Creek below Downingtown, Pa. (01480870). No correlation was found between the CC-IBI and streamflow, precipitation, or stream specific conductance, pH, temperature, or dissolved oxygen concentration.A Chester County average water budget was developed using the nine estimated watershed water budgets. Average precipitation was 48.4 inches, and average streamflow was 21.4 inches. Average runoff and base flow were 8.3 and 13.1 inches, respectively, and average evapotranspiration and estimation of errors was 27.2 inches."

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Zhen; Bian, Xin; Karniadakis, George Em, E-mail: george-karniadakis@brown.edu

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamicsmore » based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.« less

Simultaneous Multiwavelength Observations of V404 Cygni during its 2015 June Outburst Decay Strengthen the Case for an Extremely Energetic Jet-base

NASA Astrophysics Data System (ADS)

Maitra, Dipankar; Scarpaci, John F.; Grinberg, Victoria; Reynolds, Mark T.; Markoff, Sera; Maccarone, Thomas J.; Hynes, Robert I.

2017-12-01

We present results of multiband optical photometry of the black hole X-ray binary system V404 Cyg obtained using Wheaton College Observatory’s 0.3 m telescope, along with strictly simultaneous INTEGRAL and Swift observations during 2015 June 25.15–26.33 UT, and 2015 June 27.10–27.34 UT. These observations were made during the 2015 June outburst of the source when it was going through an epoch of violent activity in all wavelengths ranging from radio to γ-rays. The multiwavelength variability timescale favors a compact emission region, most likely originating in a jet outflow, for both observing epochs presented in this work. The simultaneous INTEGRAL/Imager on Board the Integral Satellite (IBIS) 20–40 keV light curve obtained during the June 27 observing run correlates very strongly with the optical light curve, with no detectable delay between the optical bands as well as between the optical and hard X-rays. The average slope of the dereddened spectral energy distribution was roughly flat between the {I}C- and V-bands during the June 27 run, even though the optical and X-ray flux varied by >25× during the run, ruling out an irradiation origin for the optical and suggesting that the optically thick to optically thin jet synchrotron break during the observations was at a frequency larger than that of V-band, which is quite extreme for X-ray binaries. These observations suggest that the optical emission originated very close to the base of the jet. A strong {{H}}α emission line, probably originating in a quasi-spherical nebula around the source, also contributes significantly in the R C -band. Our data, in conjunction with contemporaneous data at other wavelengths presented by other groups, strongly suggest that the jet-base was extremely compact and energetic during this phase of the outburst.

Fish passage and abundance around grade control structures on incised streams

USGS Publications Warehouse

Thomas, J.T.; Papanicolaou, A.N.; Pierce, C.L.; Dermisis, D.C.; Litvan, M.E.; Larson, C.J.

2009-01-01

This paper summarizes research from separate studies of fish passage over weirs (Larson et al., 2004; Litvan, 2006; Litvan, et al., 2008a-c) and weir hydraulics (Papanicolaou and Dermisis, 2006; Papanicolaou and Dermisis, in press). Channel incision in the deep loess region of western Iowa has caused decreased biodiversity because streams have high sediment loads, altered flow regimes, lost habitat, and lost lateral connectivity with their former floodplains. In-stream grade control structures (GCS) are built to prevent further erosion, protect infrastructure, and reduce sediment loads. However, GCS can have a detrimental impact on fisheries abundance and migration, biodiversity, and longitudinal connectivity. Fish mark-recapture studies were performed on stretches of streams with and without GCS. GCS with vertical or 1:4 (rise/run) downstream slopes did not allow fish migration, but GCS with slopes ??? 1:15 did. GCS sites were characterized by greater proportions of pool habitat, maximum depths, fish biomass, slightly higher index of biotic integrity (IBI) scores, and greater macroinvertebrate abundance and diversity than non-GCS sites. After modification of three GCS, IBI scores increased and fish species exhibiting truncated distributions before were found throughout the study area. Another study examined the hydraulic performance of GCS to facilitate unimpeded fish passage by determining the mean and turbulent flow characteristics in the vicinity of the GCS via detailed, non-intrusive field tests. Mean flow depth (Y) and velocity (V) atop the GCS were critical for evaluating GCS performance. Turbulent flow measurements illustrated that certain GCS designs cause sudden constrictions which form eddies large enough to disorient fish. GCS with slopes ??? 1:15 best met the minimum requirements to allow catfish passage of a flow depth of ??? 0.31 m and a mean flow velocity of ??? 1.22 m/s. ?? 2009 ASCE.

Estimating carbon sequestration in the piedmont ecoregion of the United States from 1971 to 2010

USGS Publications Warehouse

Liu, Jinxun; Sleeter, Benjamin M.; Zhu, Zhiliang; Heath, Linda S.; Tan, Zhengxi; Wilson, Tamara; Sherba, Jason T.; Zhou, Decheng

2016-01-01

Background: Human activities have diverse and profound impacts on ecosystem carbon cycles. The Piedmont ecoregion in the eastern United States has undergone significant land use and land cover change in the past few decades. The purpose of this study was to use newly available land use and land cover change data to quantify carbon changes within the ecoregion. Land use and land cover change data (60-m spatial resolution) derived from sequential remotely sensed Landsat imagery were used to generate 960-m resolution land cover change maps for the Piedmont ecoregion. These maps were used in the Integrated Biosphere Simulator (IBIS) to simulate ecosystem carbon stock and flux changes from 1971 to 2010. Results: Results show that land use change, especially urbanization and forest harvest had significant impacts on carbon sources and sinks. From 1971 to 2010, forest ecosystems sequestered 0.25 Mg C ha−1 yr−1, while agricultural ecosystems sequestered 0.03 Mg C ha−1 yr−1. The total ecosystem C stock increased from 2271 Tg C in 1971 to 2402 Tg C in 2010, with an annual average increase of 3.3 Tg C yr−1. Conclusions: Terrestrial lands in the Piedmont ecoregion were estimated to be weak net carbon sink during the study period. The major factors contributing to the carbon sink were forest growth and afforestation; the major factors contributing to terrestrial emissions were human induced land cover change, especially urbanization and forest harvest. An additional amount of carbon continues to be stored in harvested wood products. If this pool were included the carbon sink would be stronger. Keywords: Land-use change, Carbon change, Piedmont ecoregion, IBIS model

Hard X-ray Variations in the Crab Nebula

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, M. L.; Case, G. L.; Baumgarter, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camero-Arranz, A.; Chaplin, V.; Connaughton, V.;

A test of systematic coarse-graining of molecular dynamics simulations: Thermodynamic properties

NASA Astrophysics Data System (ADS)

Fu, Chia-Chun; Kulkarni, Pandurang M.; Scott Shell, M.; Gary Leal, L.

2012-10-01

Coarse-graining (CG) techniques have recently attracted great interest for providing descriptions at a mesoscopic level of resolution that preserve fluid thermodynamic and transport behaviors with a reduced number of degrees of freedom and hence less computational effort. One fundamental question arises: how well and to what extent can a "bottom-up" developed mesoscale model recover the physical properties of a molecular scale system? To answer this question, we explore systematically the properties of a CG model that is developed to represent an intermediate mesoscale model between the atomistic and continuum scales. This CG model aims to reduce the computational cost relative to a full atomistic simulation, and we assess to what extent it is possible to preserve both the thermodynamic and transport properties of an underlying reference all-atom Lennard-Jones (LJ) system. In this paper, only the thermodynamic properties are considered in detail. The transport properties will be examined in subsequent work. To coarse-grain, we first use the iterative Boltzmann inversion (IBI) to determine a CG potential for a (1-ϕ)N mesoscale particle system, where ϕ is the degree of coarse-graining, so as to reproduce the radial distribution function (RDF) of an N atomic particle system. Even though the uniqueness theorem guarantees a one to one relationship between the RDF and an effective pairwise potential, we find that RDFs are insensitive to the long-range part of the IBI-determined potentials, which provides some significant flexibility in further matching other properties. We then propose a reformulation of IBI as a robust minimization procedure that enables simultaneous matching of the RDF and the fluid pressure. We find that this new method mainly changes the attractive tail region of the CG potentials, and it improves the isothermal compressibility relative to pure IBI. We also find that there are optimal interaction cutoff lengths for the CG system, as a function of ϕ, that are required to attain an adequate potential while maintaining computational speedup. To demonstrate the universality of the method, we test a range of state points for the LJ liquid as well as several LJ chain fluids.

Multi-level stressor analysis from the DNA/biochemical level to community levels in an urban stream and integrative health response (IHR) assessments.

PubMed

Lee, Jae Hoon; Kim, Joon Ha; Oh, Hee-Mock; An, Kwang-Guk

2013-01-01

The objectives of this study were to identify multi-level stressors at the DNA/biochemical level to the community level in fish in an urban stream and to develop an integrative health response (IHR) model for ecological health diagnosis. A pristine control site (S (c) ) and an impacted site (S (i) ) were selected from among seven pre-screened sites studied over seven years. Various chemical analyses indicated that nutrient enrichment (Nitrogen, Phosphorus) and organic pollution were significantly greater (t > 8.783, p < 0.01) at the S (i) site compared to the S (c) site. Single-cell gel electrophoresis (comet assays) of DNA-level impairment indicated significantly (t = 5.678, p < 0.01) greater tail intensity, expressed as % tail-DNA, at the S (i) site and genotoxic responses were detected in the downstream reach. Ethoxyresorufin-O-deethylase (EROD) assays, as a physiological bioindicator, were 2.8-fold higher (p < 0.05, NK-test after ANOVA) at the S (i) site. Tissue analysis using a necropsy-based health assessment index (NHAI) showed distinct internal organ disorders in three tissues, i.e., liver, kidney, and gill, at the S (i) site. Population-level analysis using the sentinel species Zacco platypus showed that the regression coefficient (b) was 3.012 for the S (i) site and 2.915 for the S (c) site, indicating population skewness in the downstream reach. Community-level health was impaired at the S (i) site based on an index of biological integrity (IBI), and physical habitat modifications were identified by a qualitative habitat evaluation index (QHEI). Overall, the model values for the integrative health response (IHR), developed using the star plot approach, were 3.22 (80.5%) at the S (c) site and 0.74 (18.5%) at the S (i) site, indicating that, overall, ecological health impairments were evident in the urban reach. Our study was based on multi-level approaches using biological organization and the results suggest that there is a pivotal point of linkage between mechanistic understanding and real ecological consequences of environmental stressors.

UNC-Utah NA-MIC framework for DTI fiber tract analysis.

PubMed

Verde, Audrey R; Budin, Francois; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Ahn, Mihye; Johnson, Hans; Matsui, Joy; Hazlett, Heather C; Sharma, Anuja; Goodlett, Casey; Shi, Yundi; Gouttard, Sylvain; Vachet, Clement; Piven, Joseph; Zhu, Hongtu; Gerig, Guido; Styner, Martin

2014-01-01

Diffusion tensor imaging has become an important modality in the field of neuroimaging to capture changes in micro-organization and to assess white matter integrity or development. While there exists a number of tractography toolsets, these usually lack tools for preprocessing or to analyze diffusion properties along the fiber tracts. Currently, the field is in critical need of a coherent end-to-end toolset for performing an along-fiber tract analysis, accessible to non-technical neuroimaging researchers. The UNC-Utah NA-MIC DTI framework represents a coherent, open source, end-to-end toolset for atlas fiber tract based DTI analysis encompassing DICOM data conversion, quality control, atlas building, fiber tractography, fiber parameterization, and statistical analysis of diffusion properties. Most steps utilize graphical user interfaces (GUI) to simplify interaction and provide an extensive DTI analysis framework for non-technical researchers/investigators. We illustrate the use of our framework on a small sample, cross sectional neuroimaging study of eight healthy 1-year-old children from the Infant Brain Imaging Study (IBIS) Network. In this limited test study, we illustrate the power of our method by quantifying the diffusion properties at 1 year of age on the genu and splenium fiber tracts.

UNC-Utah NA-MIC framework for DTI fiber tract analysis

PubMed Central

Verde, Audrey R.; Budin, Francois; Berger, Jean-Baptiste; Gupta, Aditya; Farzinfar, Mahshid; Kaiser, Adrien; Ahn, Mihye; Johnson, Hans; Matsui, Joy; Hazlett, Heather C.; Sharma, Anuja; Goodlett, Casey; Shi, Yundi; Gouttard, Sylvain; Vachet, Clement; Piven, Joseph; Zhu, Hongtu; Gerig, Guido; Styner, Martin

2014-01-01

Diffusion tensor imaging has become an important modality in the field of neuroimaging to capture changes in micro-organization and to assess white matter integrity or development. While there exists a number of tractography toolsets, these usually lack tools for preprocessing or to analyze diffusion properties along the fiber tracts. Currently, the field is in critical need of a coherent end-to-end toolset for performing an along-fiber tract analysis, accessible to non-technical neuroimaging researchers. The UNC-Utah NA-MIC DTI framework represents a coherent, open source, end-to-end toolset for atlas fiber tract based DTI analysis encompassing DICOM data conversion, quality control, atlas building, fiber tractography, fiber parameterization, and statistical analysis of diffusion properties. Most steps utilize graphical user interfaces (GUI) to simplify interaction and provide an extensive DTI analysis framework for non-technical researchers/investigators. We illustrate the use of our framework on a small sample, cross sectional neuroimaging study of eight healthy 1-year-old children from the Infant Brain Imaging Study (IBIS) Network. In this limited test study, we illustrate the power of our method by quantifying the diffusion properties at 1 year of age on the genu and splenium fiber tracts. PMID:24409141

KSC-06pd0229

NASA Image and Video Library

2006-02-07

KENNEDY SPACE CENTER, FLA. - At NASA Kennedy Space Center, roseate spoonbills (front) and white ibis search the murky canal for food. Spoonbills inhabit areas of mangroves such as on the coasts of southern Florida and Texas. These birds feed on shrimp and fish in the shallow water, sweeping their bills from side to side. White ibis inhabit marshy sloughs, mud flats, lagoons and swamp forests along the coast from South Carolina to Florida and Texas and south to northern South America. The Center shares a boundary with the Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the Refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Jim Grossmann

The repetition timing of high frequency afferent stimulation drives the bidirectional plasticity at central synapses in the rat medial vestibular nuclei.

PubMed

Scarduzio, M; Panichi, R; Pettorossi, V E; Grassi, S

2012-10-25

In this study we show that high frequency stimulation (HFS, 100Hz) of afferent fibers to the medial vestibular nucleus (MVN) can induce opposite long-term modifications of synaptic responses in the type B neurons depending upon the stimulation pattern. Long burst stimulation (LBS: 2s) and short burst stimulation (SBS: 0.55s) were applied with different burst number (BN) and inter-burst intervals (IBI). It results that both LBS and SBS can induce either N-methyl-d aspartate receptors (NMDARs)-mediated long-term potentiation (LTP) or long-term depression (LTD), depending on temporal organization of repetitive bursts. In particular, the IBI plays a relevant role in guiding the shift from LTP to LTD since by using both LBS and SBS LTP is induced by shorter IBI than LTD. By contrast, the sign of long-term effect does not depend on the mean impulse frequency evaluated within the entire stimulation period. Therefore, the patterns of repetitive vestibular activation with different ratios between periods of increased activity and periods of basal activity may lead to LTP or LTD probably causing different levels of postsynaptic Ca(2+). On the whole, this study demonstrates that glutamatergic vestibular synapse in the MVN can undergo NMDAR-dependent bidirectional plasticity and puts forward a new aspect for understanding the adaptive and compensatory plasticity of the oculomotor responses. Copyright © 2012 IBRO. Published by Elsevier Ltd. All rights reserved.

[The impact of load density differences on land subsidence based on build-up index and PS-InSAR technology].

PubMed

Chen, Bei-Bei; Gong, Hui-Li; Li, Xiao-Juan; Lei, Kun-Chao; Lin, Zhu; Wang, Yan-Bing

2013-08-01

The excessive mining for underground water is the main reason inducing the land subsidence in Beijing, while, increasing of load brought by the urban construction aggravate the local land subsidence in a certain degree. As an international metropolis, the problems of land subsidence that caused by urban construction are becoming increasingly highlights, so revealing the relationship between regional load increase and the response of land subsidence also becomes one of the key problems in the land subsidence research field. In order to analyze the relationship between the load changes in construction and the land subsidence quantitatively, the present study selected the TM remote sensing image covering Beijing plain and used Erdas Modeler tool to invert the index based on building site (IBI), acquired the spatial and temporal change information in research area further; Based on results monitored by PS-InSAR (permanent scatterer interferometry) and IBI index method, and combined with the GIS spatial analysis method in the view of pixels in different scales, this paper analyzes the correlation between typical area load change and land subsidence, The conclusions show that there is a positive correlation between the density of load and the homogeneity of subsidence, especially in area which has a high sedimentation rate. Owing to such characteristics as the complexity and hysteretic nature of soil and geological structure, it is not obvious that the land subsidence caused by the increase of load in a short period. But with the increasing of local land load made by high density buildings and additional settlement of each monomer building superposed with each other, regional land subsidence is still a question that cannot be ignored and needs long-term systematic research and discussion.

Polarized Gamma-Ray Emission from the Galactic Black Hole Cygnus X-1

NASA Technical Reports Server (NTRS)

Laurent, P.; Rodriquez, J.; Wilms, J.; Bel, M. Cadolle; Pottschmidt, K.; Grinberg, V.

2011-01-01

Because of their inherently high flux allowing the detection of clear signals, black hole X-ray binaries are interesting candidates for polarization studies, even if no polarization signals have been observed from them before. Such measurements would provide further detailed insight into these sources' emission mechanisms. We measured the polarization of the gamma-ray emission from the black hole binary system Cygnus X-I with the INTEGRAL/IBIS telescope. Spectral modeling ofthe data reveals two emission mechanisms: The 250-400 keY data are consistent with emission dominated by Compton scattering on thermal electrons and are weakly polarized. The second spectral component seen in the 400keV-2MeV band is by contrast strongly polarized, revealing that the MeV emission is probably related to the jet first detected in the radio band.

Relief influence on the spatial distribution of the Atlantic Forest cover on the Ibiúna Plateau, SP.

PubMed

Silva, W G; Metzger, J P; Simões, S; Simonetti, C

2007-08-01

Several studies suggest that, on a large scale, relief conditions influence the Atlantic Forest cover. The aim of this work was to explore these relationships on a local scale, in Caucaia do Alto, on the Ibiúna Plateau. Within an area of about 78 km(2), the distribution of forest cover, divided into two successional stages, was associated with relief attribute data (slope, slope orientation and altitude). The mapping of the vegetation was based on the interpretation of stereoscopic pairs of aerial photographs, from April 2000, on a scale of 1:10,000, while the relief attributes were obtained by geoprocessing from digitalized topographic maps on a scale of 1:10,000. Statistical analyses, based on qui-square tests, revealed that there was a more extensive forest cover, irrespective of the successional stage, in steeper areas (>10 degrees) located at higher altitudes (>923 m), but no influence of the slope orientation. There was no sign of direct influence of relief on the forest cover through environmental gradients that might have contributed to the forest regeneration. Likewise, there was no evidence that these results could have been influenced by the distance from roads or urban areas or with respect to permanent preservation areas. Relief seems to influence the forest cover indirectly, since agricultural land use is preferably made in flatter and lower areas. These results suggest a general distribution pattern of the forest remnants, independent of the scale of study, on which relief indirectly has a strong influence, since it determines human occupation.

A comparative study of coarse-graining methods for polymeric fluids: Mori-Zwanzig vs. iterative Boltzmann inversion vs. stochastic parametric optimization

NASA Astrophysics Data System (ADS)

Li, Zhen; Bian, Xin; Yang, Xiu; Karniadakis, George Em

2016-07-01

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.

Do patients with chronic pain show autonomic arousal when confronted with feared movements? An experimental investigation of the fear-avoidance model.

PubMed

Glombiewski, Julia Anna; Riecke, Jenny; Holzapfel, Sebastian; Rief, Winfried; König, Stephan; Lachnit, Harald; Seifart, Ulf

2015-03-01

The relevance of a phobia-based conceptualization of fear for individuals with chronic pain has been much debated in the literature. This study investigated whether patients with highly fearful chronic low back pain show distinct physiological reaction patterns compared with less fearful patients when anticipating aversive back pain-related movements. We used an idiosyncratic fear induction paradigm and collected 2 different measures of autonomic nervous system activation and muscle tension in the lower back. We identified 2 distinct psychophysiological response patterns. One pattern was characterized by a moderate increase in skin conductance, interbeat interval (IBI) increase, and muscle tension increase in the lower back. This response was interpreted as an attention reaction to a moderately stressful event. The other pattern, found in 58% of the participants, was characterized by a higher skin conductance response, IBI decrease, and muscle tension increase in the lower back. According to Bradley and Lang defense cascade model, this response is typical of a fear reaction. Participants showing the psychophysiological pattern typical of fear also had elevated scores on some self-report measures of components of the fear-avoidance model, relative to participants showing the reaction pattern characteristic of attention. This study is the first to provide psychophysiological evidence for the fear-avoidance model of chronic pain.

A comparative study of coarse-graining methods for polymeric fluids: Mori-Zwanzig vs. iterative Boltzmann inversion vs. stochastic parametric optimization.

PubMed

Li, Zhen; Bian, Xin; Yang, Xiu; Karniadakis, George Em

2016-07-28

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of a star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics based on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models cannot be selected arbitrarily. If the free parameters are properly defined, the reverse CG procedure also yields an accurate effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces the many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.

Skeletogenesis in sea urchin larvae under modified gravity conditions.

PubMed

Marthy, H J; Gasset, G; Tixador, R; Eche, B; Schatt, P; Dessommes, A; Marthy, U; Bacchieri, R

1998-01-01

From many points of view, skeletogenesis in sea urchins has been well described. Based on this scientific background and considering practical aspects of sea urchin development (i.e. availability of material, size of larvae, etc.), we wanted to know whether orderly skeletogenesis requires the presence of gravity. The objective has been approached by three experiments successfully performed under genuine microgravity conditions (in the STS-65 IML-2 mission of 1994; in the Photon-10 IBIS mission of 1995 and in the STS-76 S/MM-03 mission of 1996). Larvae of the sea urchin Sphaerechinus granularis were allowed to develop in microgravity conditions for several days from blastula stage onwards (onset of skeletogenesis). At the end of the missions, the recovered skeletal structures were studied with respect to their mineral composition, architecture and size. Live larvae were also recovered for post-flight culture. The results obtained clearly show that the process of mineralisation is independent of gravity: that is, the skeletogenic cells differentiate correctly in microgravity. However, abnormal skeleton architectures were encountered, particularly in the IML-2 mission, indicating that the process of positioning of the skeletogenic cells may be affected, directly or indirectly, by environmental factors, including gravity. Larvae exposed to microgravity from blastula to prism/early pluteus stage for about 2 weeks (IBIS mission), developed on the ground over the next 2 months into normal metamorphosing individuals.

First INTEGRAL Observations of V404 Cygni during the 2015 Outburst: Spectral Behavior in the 20-650 keV Energy Range

NASA Astrophysics Data System (ADS)

Roques, Jean-Pierre; Jourdain, Elisabeth; Bazzano, Angela; Fiocchi, Mariateresa; Natalucci, Lorenzo; Ubertini, Pietro

2015-11-01

In 2015 June, the source V404 Cygni (= GS2023+38) underwent an extraordinary outburst. We present the results obtained during the first revolution dedicated to this target by the INTEGRAL mission and focus on the spectral behavior in the hard X-ray domain, using both SPI and IBIS instruments. The source exhibits extreme variability and reaches fluxes of several tens of Crab. However, the emission between 20 and 650 keV can be understood in terms of two main components, varying on all the observable timescales, similar to what is observed in the persistent black hole system Cyg X-1. The low-energy component (up to ˜200 keV) presents a rather unusual shape, probably due to the intrinsic source variability. Nonetheless, a satisfactory description is obtained with a Comptonization model, if an unusually hot population of seed photons (kT0 ˜ 7 keV) is introduced. Above this first component, a clear excess extending up to 400-600 keV leads us to investigate a scenario where an additional (cutoff) power law could correspond to the contribution of the jet synchrotron emission, as proposed in Cyg X-1. A search for an annihilation feature did not provide any firm detection, with an upper limit of 2 × 10-4 ph cm-2 s-1 (2σ) for a narrow line centered at 511 keV, on the averaged obtained spectrum. Based on observations with INTEGRAL, an ESA project with instruments and science data center funded by ESA member states (especially the PI countries: Denmark, France, Germany, Italy, Spain, and Switzerland), Czech Republic, and Poland with the participation of Russia and USA.

Diversity and prevalence of hemoparasites of wading birds in southern Florida, USA.

PubMed

Coker, Sarah M; Hernandez, Sonia M; Kistler, Whitney M; Curry, Shannon E; Welch, Catharine N; Barron, Heather W; Harsch, Stefan; Murray, Maureen H; Yabsley, Michael J

2017-12-01

Relatively few studies on hemoparasites have been conducted on wading birds in the families Ardeidae and Threskiornithidae (order Pelecaniformes), especially in the United States. In this study, we obtained baseline data on the prevalence and genetic diversity of haemosporidian parasites in wading birds opportunistically sampled from southern Florida, USA. We detected blood parasites in White Ibis ( Eudocimus albus ), Glossy Ibis ( Plegadis falcinellus ), Green Heron ( Butorides virescens ), and Roseate Spoonbill ( Platalea ajaja ) with several novel host-parasite relationships. Infected birds had low parasitemias (average 0.77%, range 0-4%) suggesting that infections were chronic. Despite the low sample sizes for several of our sampled species, these data highlight the diversity of parasites in this understudied group of birds and suggest that additional studies are needed to investigate the potential impacts of these parasites on their health, especially since southern Florida is becoming increasingly urbanized which can alter parasite transmission or host susceptibility.

Water-Quality and Biological Assessment of the Iowa River and Tributaries Within and Contiguous to the Meskwaki Settlement of the Sac and Fox Tribe of the Mississippi in Iowa, 2006-07

USGS Publications Warehouse

Littin, Gregory R.; McVay, Jason C.

2009-01-01

In cooperation with the Sac and Fox Tribe of the Mississippi in Iowa (Meskwaki Nation), the U.S. Geological Survey conducted a 2-year baseline assessment of the chemical and biological quality of streams within the Meskwaki Settlement in central Iowa. The Meskwaki Nation is a federally recognized tribe that wishes to establish water-quality standards to safeguard the integrity of surface waters and aquatic biota within the settlement for the health and welfare of the tribal community. The settlement is drained by the Iowa River and four tributaries (Onion, Cattail, Raven, and Bennett Creeks). Water-quality samples were collected at three sites on the Iowa River, two sites on Onion Creek, and one site each on Cattail, Raven, and Bennett Creeks from April 2006 through July 2007. Biological and habitat assessments were conducted at all three sites on the Iowa River and the downstream-most site on Onion Creek from June through August 2007. Analysis of physical properties, major ions, nutrients, trace compounds, bacteria, and total suspended solids in water, and trace metals and organic compounds in streambed sediment provided information about the effects of anthropogenic (human related) activities on the water quality of settlement streams. Analysis of biological samples collected during the summer of 2007, including fish community, benthic macroinvertebrates, and periphyton samples, as well as physical habitat characteristics, provided information on the effects of water quality on the condition of the aquatic environment. The majority of surface water sampled within the settlement was predominately a calcium bicarbonate type. Nitrates (nitrate plus nitrite as nitrogen) exceeded the U.S. Environmental Protection Agency's (USEPA) primary drinking-water Maximum Contaminant Level of 10 ug/L in 19 of 36 samples from sites on the Iowa River and Raven and Bennett Creeks but not in samples from Onion and Cattail Creeks. None of the samples analyzed for pesticides, trace metals, wastewater, or fuel contaminants were found to exceed drinking-water regulations for the USEPA or State of Iowa targeted constituents. Bacteria densities for Escherichia coli (E. coli) ranged from less than 10 to more than 600,000 colony-forming units per 100 milliliters of water and were largest following intense rainfall runoff. The largest densities were recorded in samples collected from the tributaries, most notably from Cattail Creek downstream from the tribal headquarters area and Onion Creek downstream from the sewage lagoons. Arsenic and nickel concentrations in bottom sediment from Onion Creek exceeded the USEPA threshold effects level in a composite sample collected during the habitat assessment in July 2007. Suspended-sediment concentration was estimated in terms of total suspended solids. Overall, Onion and Bennett Creeks were the least turbid, whereas the ephemeral Cattail Creek had the most turbid samples. Aquatic-community data were collected at four sites on the Meskwaki Settlement during the summer of 2007 to provide a baseline biological assessment of stream conditions. This assessment was based on sampling of the fish, benthic macroinvertebrate, and periphyton communities along with physical habitat characteristics. Individual biological metrics were derived from the data collected during the community surveys. These metrics were used to calculate Indexes of Biological Integrity (IBIs). The calculated values from the IBIs provided a numerical value that was used to provide an assessment of the biological condition at each biological sampling site. The fish community samples indicated that all of the sampling sites would be considered in fair condition, with one exception being a collection site on the Iowa River at Highway 49 near Tama, Iowa, which was classified in poor condition. The benthic macroinvertebrate IBI indicated a classification of good for three of the four biological sampling sites, with the Iowa River near Montour, Iowa,

Dynamic habitat selection by two wading bird species with divergent foraging strategies in a seasonally fluctuating wetland

USGS Publications Warehouse

Beerens, James M.; Gawlik, Dale E.; Herring, Garth; Cook, Mark I.

2011-01-01

Seasonal and annual variation in food availability during the breeding season plays an influential role in the population dynamics of many avian species. In highly dynamic ecosystems like wetlands, finding and exploiting food resources requires a flexible behavioral response that may produce different population trends that vary with a species' foraging strategy. We quantified dynamic foraging-habitat selection by breeding and radiotagged White Ibises (Eudocimus albus) and Great Egrets (Ardea alba) in the Florida Everglades, where fluctuation in food resources is pronounced because of seasonal drying and flooding. The White Ibis is a tactile “searcher” species in population decline that specializes on highly concentrated prey, whereas the Great Egret, in a growing population, is a visual “exploiter” species that requires lower prey concentrations. In a year with high food availability, resource-selection functions for both species included variables that changed over multiannual time scales and were associated with increased prey production. In a year with low food availability, resource-selection functions included short-term variables that concentrated prey (e.g., water recession rates and reversals in drying pattern), which suggests an adaptive response to poor foraging conditions. In both years, the White Ibis was more restricted in its use of habitats than the Great Egret. Real-time species—habitat suitability models were developed to monitor and assess the daily availability and quality of spatially explicit habitat resources for both species. The models, evaluated through hindcasting using independent observations, demonstrated that habitat use of the more specialized White Ibis was more accurately predicted than that of the more generalist Great Egret.

When a Standard Candle Flickers: Hard X-Ray Variations in the Crab Nebula

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.; Cherry, M. L.; Case, G. L.; Baumgartner, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camaro-Arranz, A.; Connaughton, V.; Diehl, R.;

When a Standard Candle Flickers: Hard X-ray Variations in the Crab Nebula

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen; Cherry, Michael L.; Case, Gary L.; Baumgartner, Wayne H.; Beklen, Elif; Bhat, Narayana P.; Briggs, Michael S.; Buehler, Rolf; Camero-Arranz, Ascension; Connaughton, Valerie;

When a Standard Candle Flickers: Crab Nebula Variations in Hard X-rays

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Collen A.; Cherry, M. L.; Case, G. L.; Baumgartner, W. H.; Beklen, E.; Bhat, P. N.; Briggs, M. S.; Camero-Arranz, A.; Chaplin, V.; Connaughton, V.;

Comparison of iterative inverse coarse-graining methods

NASA Astrophysics Data System (ADS)

Rosenberger, David; Hanke, Martin; van der Vegt, Nico F. A.

2016-10-01

Deriving potentials for coarse-grained Molecular Dynamics (MD) simulations is frequently done by solving an inverse problem. Methods like Iterative Boltzmann Inversion (IBI) or Inverse Monte Carlo (IMC) have been widely used to solve this problem. The solution obtained by application of these methods guarantees a match in the radial distribution function (RDF) between the underlying fine-grained system and the derived coarse-grained system. However, these methods often fail in reproducing thermodynamic properties. To overcome this deficiency, additional thermodynamic constraints such as pressure or Kirkwood-Buff integrals (KBI) may be added to these methods. In this communication we test the ability of these methods to converge to a known solution of the inverse problem. With this goal in mind we have studied a binary mixture of two simple Lennard-Jones (LJ) fluids, in which no actual coarse-graining is performed. We further discuss whether full convergence is actually needed to achieve thermodynamic representability.

The Hard X-ray 20-40 keV AGN Luminosity Function

NASA Technical Reports Server (NTRS)

Beckmann, V.; Soldi, S.; Shrader, C. R.; Gehrels, N.; Produit, N.

2006-01-01

We have compiled a complete, significance limited extragalactic sample based on approximately 25,000 deg(sup 2) to a limiting flux of 3 x 10(exp -11) ergs per square centimeter per second. (approximately 7,000 deg(sup 2)) to a flux limit of 10(exp -11) ergs per square centimeter per second)) in the 20 - 40 keV band with INTEGRAL. We have constructed a detailed exposure map to compensate for effects of non-uniform exposure. The flux-number relation is best described by a power-law with a slope of alpha = 1.66 plus or minus 0.11. The integration of the cumulative flux per unit area leads to f(sub 20-40 keV) = 2.6 x 10(exp -10) ergs per square centimeter per second per sr(sup -1) which is about 1% of the known 20-40 keV X-ray background. We present the first luminosity function of AGN in the 20-40 keV energy range, based on 68 extragalactic objects detected by the imager IBIS/ISGRI on-board INTEGRAL. The luminosity function shows a smoothly connected two power-law form, with an index of gamma (sub 1) = 0.9 below, and gamma (sub 2) = 2.2 above the turn-over luminosity of L(sub *), = 4.6 x 10(sup 43) ergs per second. The emissivity of all INTEGRAL AGNs per unit volume is W(sub 20-40keV)(greater than 10(sup 41) ergs per second) = 2.8 x 10(sup 38) ergs per second h(sup 3)(sub 70) Mpc(sup -3). These results are consistent with those derived in the 2-20keV energy band and do not show a significant contribution by Compton-thick objects. Because the sample used in this study is truly local (z(raised bar) = 0.022)), only limited conclusions can be drawn for the evolution of AGNs in this energy band. But the objects explaining the peak in the cosmic X-ray background are likely to be either low luminosity AGN (L(sub x) less than 10(sup 41) ergs per second) or of other type, such as intermediate mass black holes, clusters, and star forming regions.

Analysing the Terrorist Threat

DTIC Science & Technology

2001-09-01

through subterfuge, several vials of Yersinia pestis ( bubonic plague -culture) which he stored along with explosives in his home. None of his ’equipment’ was...public release, distribution unlimited Ibis paper is part of the following report: TITLE: Chemical and Biological Medical Treatment Symposium

Comparison of benthos and plankton for selected areas of concern and non-areas of concern in western Lake Michigan Rivers and Harbors in 2012

USGS Publications Warehouse

Eikenberry, Barbara C. Scudder; Bell, Amanda H.; Olds, Hayley T.; Burns, Daniel J.

2016-07-25

Recent data are lacking to assess whether impairments still exist at four of Wisconsin’s largest Lake Michigan harbors that were designated as Areas of Concern (AOCs) in the late 1980s due to sediment contamination and multiple Beneficial Use Impairments (BUIs), such as those affecting benthos (macroinvertebrates) and plankton (zooplankton and phytoplankton) communities. During three seasonal sampling events (“seasons”) in May through August 2012, the U.S. Geological Survey collected sediment benthos and water plankton at the four AOCs as well as six less-degraded non-AOCs along the western Lake Michigan shoreline to assess whether AOC communities were degraded in comparison to non-AOC communities. The four AOCs are the Lower Menominee River, the Lower Green Bay and Fox River, the Sheboygan River, and the Milwaukee Estuary. Due to their size and complexity, multiple locations or “subsites” were sampled within the Lower Green Bay and Fox River AOC (Lower Green Bay, the Fox River near Allouez, and the Fox River near De Pere) and within the Milwaukee Estuary AOC (the Milwaukee River, the Menomonee River, and the Milwaukee Harbor) and single locations were sampled at the other AOCs and non-AOCs. The six non-AOCs are the Escanaba River in Michigan, and the Oconto River, Ahnapee River, Kewaunee River, Manitowoc River, and Root River in Wisconsin. Benthos samples were collected by using Hester-Dendy artificial substrates deployed for 30 days and by using a dredge sampler; zooplankton were collected by net and phytoplankton by whole-water sampler. Except for the Lower Green Bay and Milwaukee Harbor locations, communities at each AOC were compared to all non-AOCs as a group and to paired non-AOCs using taxa relative abundances and metrics, including richness, diversity, and an Index of Biotic Integrity (IBI, for Hester-Dendy samples only). Benthos samples collected during one or more seasons were rated as degraded for at least one metric at all AOCs. In the Milwaukee Estuary, benthos richness was lower in the Milwaukee River subsite spring and summer samples and in the Menomonee River subsite spring sample relative to the paired non-AOCs. Benthos diversity and IBIs at the Menomonee River subsite and IBIs at the Milwaukee River subsite and Sheboygan River were significantly lower than at all non-AOCs as a group across all seasons and therefore were rated as degraded. In addition, IBIs at the Lower Menominee River were significantly lower than those at the paired non-AOCs during all seasons and were therefore rated degraded. Benthos at both Fox River subsites and the Milwaukee River subsite were significantly different from their paired non-AOCs during all three seasons, based on a comparison of the relative abundances of taxa using multivariate testing. Metrics for plankton at AOCs were not significantly lower than those at the paired or group non-AOCs during all seasons; however, zooplankton richness in spring at the Sheboygan River and in fall at the Menomonee River subsite was rated as degraded in comparison to paired non-AOCs. Also, zooplankton richness in fall at the Fox River near Allouez subsite and in spring at the Milwaukee River subsite was rated degraded overall because values were lower than at all non-AOCs as a group and lower than at the paired non-AOCs. Zooplankton diversity in fall at the Fox River near Allouez subsite and the Lower Menominee River was rated degraded in comparison to paired non-AOC comparison sites. Zooplankton communities at the Fox River near Allouez subsite were significantly different from the paired non-AOCs when multivariate comparisons were made without rotifers other than A. priodonta. Overall, benthos and zooplankton BUIs remained at the AOCs in 2012 but no AOCs with a phytoplankton BUI were rated degraded in comparison to non-AOCs. The use of a multiple ecological measures, structural and functional, and multiple statistical analyses, biological metrics and multivariate statistics, provided assessments that defined 2012 status of communities relative to less-impaired non-AOCs in the Great Lakes area.

Convective Cloud and Rainfall Processes Over the Maritime Continent: Simulation and Analysis of the Diurnal Cycle

NASA Astrophysics Data System (ADS)

Gianotti, Rebecca L.

The Maritime Continent experiences strong moist convection, which produces significant rainfall and drives large fluxes of heat and moisture to the upper troposphere. Despite the importance of these processes to global circulations, current predictions of climate change over this region are still highly uncertain, largely due to inadequate representation of the diurnally-varying processes related to convection. In this work, a coupled numerical model of the land-atmosphere system (RegCM3-IBIS) is used to investigate how more physically-realistic representations of these processes can be incorporated into large-scale climate models. In particular, this work improves simulations of convective-radiative feedbacks and the role of cumulus clouds in mediating the diurnal cycle of rainfall. Three key contributions are made to the development of RegCM3-IBIS. Two pieces of work relate directly to the formation and dissipation of convective clouds: a new representation of convective cloud cover, and a new parameterization of convective rainfall production. These formulations only contain parameters that can be directly quantified from observational data, are independent of model user choices such as domain size or resolution, and explicitly account for subgrid variability in cloud water content and nonlinearities in rainfall production. The third key piece of work introduces a new method for representation of cloud formation within the boundary layer. A comprehensive evaluation of the improved model was undertaken using a range of satellite-derived and ground-based datasets, including a new dataset from Singapore's Changi airport that documents diurnal variation of the local boundary layer height. The performance of RegCM3-IBIS with the new formulations is greatly improved across all evaluation metrics, including cloud cover, cloud liquid water, radiative fluxes and rainfall, indicating consistent improvement in physical realism throughout the simulation. This work demonstrates that: (1) moist convection strongly influences the near surface environment by mediating the incoming solar radiation and net radiation at the surface; (2) dissipation of convective cloud via rainfall plays an equally important role in the convectiveradiative feedback as the formation of that cloud; and (3) over parts of the Maritime Continent, rainfall is a product of diurnally-varying convective processes that operate at small spatial scales, on the order of 1 km. (Copies available exclusively from MIT Libraries, libraries.mit.edu/docs - docs@mit.edu)

Depression is associated with increased vagal withdrawal during unpleasant emotional imagery after cardiac surgery.

PubMed

Patron, Elisabetta; Messerotti Benvenuti, Simone; Favretto, Giuseppe; Gasparotto, Renata; Palomba, Daniela

2015-05-01

The aim of this study was to examine the influence of depression on heart rate and heart rate variability (HRV) during emotional imagery in patients after cardiac surgery. Based on the scores of the Center for Epidemiological Studies of Depression (CES-D) scale, 28 patients after cardiac surgery were assigned either to the group with depression (CES-D scores ≥ 16; N = 14) or the one without depression (CES-D scores<16; N = 14). Each patient completed a rest period and an emotional imagery including pleasant, neutral and unpleasant scripts. Inter-beat intervals (IBIs) and HRV were measured during the entire protocol. Compared to nondepressed patients, those with depression had greater reductions in high frequency expressed in normalized units (HF n.u.) during the imaging of the unpleasant script (p = .003, Cohen's d = 1.34). Moreover, HF n.u. were lower during the imaging of the unpleasant script than the pleasant one in depressed patients only (p = .020, Cohen's d = 0.55). CES-D scores were also inversely correlated with residualized changes in IBIs (r = -.38, p = .045) and HF n.u. (r = -.49, p = .008) from rest to the imaging of the unpleasant script. The relationship between depression and increased vagal withdrawal during unpleasant emotional imagery extends to patients after cardiac surgery. The present study suggests that increased vagal withdrawal to negative emotions in patients after cardiac surgery may mediate the conferral of cardiac risk by depression. Copyright © 2014 Elsevier B.V. All rights reserved.

The reference ballistic imaging database revisited.

PubMed

De Ceuster, Jan; Dujardin, Sylvain

2015-03-01

A reference ballistic image database (RBID) contains images of cartridge cases fired in firearms that are in circulation: a ballistic fingerprint database. The performance of an RBID was investigated a decade ago by De Kinder et al. using IBIS(®) Heritage™ technology. The results of that study were published in this journal, issue 214. Since then, technologies have evolved quite significantly and novel apparatus have become available on the market. The current research article investigates the efficiency of another automated ballistic imaging system, Evofinder(®) using the same database as used by De Kinder et al. The results demonstrate a significant increase in correlation efficiency: 38% of all matches were on first position of the Evofinder correlation list in comparison to IBIS(®) Heritage™ where only 19% were on the first position. Average correlation times are comparable to the IBIS(®) Heritage™ system. While Evofinder(®) demonstrates specific improvement for mutually correlating different ammunition brands, ammunition dependence of the markings is still strongly influencing the correlation result because the markings may vary considerably. As a consequence a great deal of potential hits (36%) was still far down in the correlation lists (positions 31 and lower). The large database was used to examine the probability of finding a match as a function of correlation list verification. As an example, the RBID study on Evofinder(®) demonstrates that to find at least 90% of all potential matches, at least 43% of the items in the database need to be compared on screen and this for breech face markings and firing pin impression separately. These results, although a clear improvement to the original RBID study, indicate that the implementation of such a database should still not be considered nowadays. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels.

PubMed

Kasahara, Kota; Kinoshita, Kengo

2016-01-01

Ion conduction mechanisms of ion channels are a long-standing conundrum. Although the molecular dynamics (MD) method has been extensively used to simulate ion conduction dynamics at the atomic level, analysis and interpretation of MD results are not straightforward due to complexity of the dynamics. In our previous reports, we proposed an analytical method called ion-binding state analysis to scrutinize and summarize ion conduction mechanisms by taking advantage of a variety of analytical protocols, e.g., the complex network analysis, sequence alignment, and hierarchical clustering. This approach effectively revealed the ion conduction mechanisms and their dependence on the conditions, i.e., ion concentration and membrane voltage. Here, we present an easy-to-use computational toolkit for ion-binding state analysis, called IBiSA_tools. This toolkit consists of a C++ program and a series of Python and R scripts. From the trajectory file of MD simulations and a structure file, users can generate several images and statistics of ion conduction processes. A complex network named ion-binding state graph is generated in a standard graph format (graph modeling language; GML), which can be visualized by standard network analyzers such as Cytoscape. As a tutorial, a trajectory of a 50 ns MD simulation of the Kv1.2 channel is also distributed with the toolkit. Users can trace the entire process of ion-binding state analysis step by step. The novel method for analysis of ion conduction mechanisms of ion channels can be easily used by means of IBiSA_tools. This software is distributed under an open source license at the following URL: http://www.ritsumei.ac.jp/~ktkshr/ibisa_tools/.

TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.

PubMed

Menges, Fabian; Narzisi, Giuseppe; Mishra, Bud

2011-09-01

Currently, re-sequencing approaches use multiple modules serially to interpret raw sequencing data from next-generation sequencing platforms, while remaining oblivious to the genomic information until the final alignment step. Such approaches fail to exploit the full information from both raw sequencing data and the reference genome that can yield better quality sequence reads, SNP-calls, variant detection, as well as an alignment at the best possible location in the reference genome. Thus, there is a need for novel reference-guided bioinformatics algorithms for interpreting analog signals representing sequences of the bases ({A, C, G, T}), while simultaneously aligning possible sequence reads to a source reference genome whenever available. Here, we propose a new base-calling algorithm, TotalReCaller, to achieve improved performance. A linear error model for the raw intensity data and Burrows-Wheeler transform (BWT) based alignment are combined utilizing a Bayesian score function, which is then globally optimized over all possible genomic locations using an efficient branch-and-bound approach. The algorithm has been implemented in soft- and hardware [field-programmable gate array (FPGA)] to achieve real-time performance. Empirical results on real high-throughput Illumina data were used to evaluate TotalReCaller's performance relative to its peers-Bustard, BayesCall, Ibis and Rolexa-based on several criteria, particularly those important in clinical and scientific applications. Namely, it was evaluated for (i) its base-calling speed and throughput, (ii) its read accuracy and (iii) its specificity and sensitivity in variant calling. A software implementation of TotalReCaller as well as additional information, is available at: http://bioinformatics.nyu.edu/wordpress/projects/totalrecaller/ fabian.menges@nyu.edu.

WV R-EMAP STUDY: MULTIPLE-OBJECTIVE SAMPLING DESIGN FRAMEWORK

EPA Science Inventory

A multi-objective sampling design has been implemented through Regional Monitoring and Assessment Program (R-EMAP) support of a cooperative agreement with the state of West Virginia. Goals of the project include: 1) development and testing of a temperature-adjusted fish IBI for t...

78 FR 8407 - Authorization To Manufacture and Distribute Postage Evidencing Systems; Discontinued Indicia

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-06

... discontinuing the non-IBI or non-IMI indicia over such a short period of time it would put them at risk in the... has discussed with the industry the need to discontinue these indicia. Since the introduction of the...

Differences in SEM-AVS and ERM-ERL predictions of sediment impacts from metals in two US Virgin Islands marinas.

PubMed

Hinkey, Lynne M; Zaidi, Baqar R

2007-02-01

Two US Virgin Islands marinas were examined for potential metal impacts by comparing sediment chemistry data with two sediment quality guideline (SQG) values: the ratio of simultaneously extractable metals to acid volatile sulfides (SEM-AVS), and effects range-low and -mean (ERL-ERM) values. ERL-ERMs predicted the marina/boatyard complex (IBY: 2118 microg/g dry weight total metals, two exceeded ERMs) would have greater impacts than the marina with no boatyard (CBM: 231 microg/g dry weight total metals, no ERMs exceeded). The AVS-SEM method predicted IBY would have fewer effects due to high AVS-forming metal sulfide complexes, reducing trace metal bioavailability. These contradictory predictions demonstrate the importance of validating the results of either of these methods with other toxicity measures before making any management or regulatory decisions regarding boating and marina impacts. This is especially important in non-temperate areas where sediment quality guidelines have not been validated.

Isolation of Salmonella spp. in cattle egrets (Bubulcus ibis) from Fernando de Noronha Archipelago, Brazil.

PubMed

Silva, Marcio A; Fernandes, Érika F S T; Santana, Sandra C; Marvulo, Maria Fernanda V; Barros, Mércia R; Vilela, Sineide M O; Reis, Eliane M F; Mota, Rinaldo A; Silva, Jean C R

2018-03-03

The growth of the population of cattle egrets (Bubulcus ibis) in the archipelago of Fernando de Noronha constitutes a threat to public health and biological diversity because of their competition with and predation on native species and the possibility of transmission of pathogens to human beings, livestock and native wildlife. The aim here was to search for, isolate and identify serovars of Salmonella in clinically healthy local cattle egrets. Cloacal swabs were obtained from 456 clinically healthy cattle egrets of both sexes and a variety of ages. The swabs were divided into 51 pools. Six of these (11.7%) presented four serovars of Salmonella enterica subspecies enterica: Salmonella serovar Typhimurium; Salmonella serovar Newport; Salmonella serovar Duisburg; and Salmonella serovar Zega. One sample was identified as S. enterica subspecies enterica O16:y:-. Results in this study suggest that cattle egrets may be reservoirs of this agent on Fernando de Noronha and represent a risk to public health and biological diversity. Copyright © 2018. Published by Elsevier Editora Ltda.

Wildlife Photography - Birds

NASA Image and Video Library

2017-05-04

A juvenile white ibis stands in a waterway at NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. More than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles call Kennedy and the wildlife refuge home.

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI)

USDA-ARS?s Scientific Manuscript database

The scientific presentations at the First International Brachypodium Conference (abstracts available at www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic s...

Wildlife Photography - Birds

NASA Image and Video Library

2017-05-04

A glossy ibis searches for food in a marshy area at NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. More than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles call Kennedy and the wildlife refuge home.

Climatology of the Occurrence Rate and Amplitudes of Local Time Distinguished Equatorial Plasma Depletions Observed by Swarm Satellite

NASA Astrophysics Data System (ADS)

Wan, Xin; Xiong, Chao; Rodriguez-Zuluaga, Juan; Kervalishvili, Guram N.; Stolle, Claudia; Wang, Hui

2018-04-01

In this study, we developed an autodetection technique for the equatorial plasma depletions (EPDs) and their occurrence and depletion amplitudes based on in situ electron density measurements gathered by Swarm A satellite. For the first time, comparisons are made among the detected EPDs and their amplitudes with the loss of Global Positioning System (GPS) signal of receivers onboard Swarm A, and the Swarm Level-2 product, Ionospheric Bubble Index (IBI). It has been found that the highest rate of EPD occurrence takes place generally between 2200 and 0000 magnetic local time (MLT), in agreement with the IBI. However, the largest amplitudes of EPD are detected earlier at about 1900-2100 MLT. This coincides with the moment of higher background electron density and the largest occurrence of GPS signal loss. From a longitudinal perspective, the higher depletion amplitude is always witnessed in spatial bins with higher background electron density. At most longitudes, the occurrence rate of postmidnight EPDs is reduced compared to premidnight ones; while more postmidnight EPDs are observed at African longitudes. CHAMP observations confirm this point regardless of high or low solar activity condition. Further by comparing with previous studies and the plasma vertical drift velocity from ROCSAT-1, we suggest that while the F region vertical plasma drift plays a key role in dominating the occurrence of EPDs during premidnight hours, the postmidnight EPDs are the combined results from the continuing of former EPDs and newborn EPDs, especially during June solstice. And these newborn EPDs during postmidnight hours seem to be less related to the plasma vertical drift.

A SMALL WATERSHED CHARACTERIZATION, CLASSIFICATION, AND ASSESSMENT FOR WEST VIRGINIA UTILIZING EMAP DESIGN AND TOOLS

EPA Science Inventory

A multi-objective sampling design has been implemented through R-EMAP support of a cooperative agreement with the state of West Virginia. Goals of the project include: 1) development and testing of a temperature-adjusted fish IBI for the Central Appalachian Plateau and Western Al...

My General Education: "'Discovering" Amitav Ghosh

ERIC Educational Resources Information Center

Richards, Sandra L.

2015-01-01

Asked to recommend a faculty reading that might counteract our habits of overspecialization, I nominate Amitav Ghosh's "Sea of Poppies" (2008), the first novel in his "Ibis" trilogy. Reading Ghosh has offered me not only a fascinating introduction to the Indian Ocean world but also an occasion to reflect upon the dynamics of a…

Tuberculosis Reports - UDOH-EPI

Science.gov Websites

Tuberculosis Tuberculosis Reports Tuberculosis Reports Tuberculosis Utah Reports Tuberculosis in Utah - Five (IBIS-PH) Tuberculosis 2015 Monthy Reports January February March April May June Tuberculosis National Reports National TB Data and Statistics Tuberculosis Global Reports TB Incidence Map by country TB

Communications Satellite Tariffs for Television. IBI Monograph Number 3.

ERIC Educational Resources Information Center

Passell, Peter; Ross, Leonard

Dealing with the experiences of and the conditions for international and intercontinental satellite transmissions as they have been carried out during the past decade, this paper focuses on the rules and practices applied within the Intelsat system. The purpose of the paper is to explore the issues involved in establishing tariffs in accord with…

Student Science Teachers' Ideas about Endangered Bird Species: Hermit Ibis, Chukar Partridge

ERIC Educational Resources Information Center

Cardak, Osman; Dikmenli, Musa

2009-01-01

In this study, student science teachers' ideas and views of endangered bird species and their protection are analysed. 173 student science teachers studying at Selcuk University in the department of science education, participated in the study. Data analysis provides evidence that the majority of students thought that human intervention is…

Analyzing key ecological functions for transboundary subbasin assessments.

Treesearch

B.G Marcot; T.A. O' Neil; J.B. Nyberg; A. MacKinnon; P.J. Paquet; D.H. Johnson

2007-01-01

We present an evaluation of the ecological roles ("key ecological functions" or KEFs) of 618 wildlife species as one facet of subbasin assessment in the Columbia River basin (CRB) of the United States and Canada. Using a wildlife-habitat relationships database (IBIS) and geographic information system, we have mapped KEFs as levels of functional redundancy (...

Land cover classification for Puget Sound, 1974-1979

NASA Technical Reports Server (NTRS)

Eby, J. R.

1981-01-01

Digital analysis of LANDSAT data for land cover classification projects in the Puget Sound region is surveyed. Two early rural and urban land use classifications and their application are described. After acquisition of VICAR/IBIs software, another land use classification of the area was performed, and is described in more detail. Future applications are considered.

IBIS FOR FISH AND MACROINVERTEBRATES DEVELOPED FOR GREAT LAKES COASTAL WETLANDS: AN EPA REGIONAL ENVIRONMENTAL MONITORING AND ASSESSMENT PROGRAM (REMAP) PROJECT

EPA Science Inventory

The research from this REMAP project produced results that demonstrate various stages of an assessment strategy and produced tools including an inventory classification, field methods and multimetric biotic indices that are now available for use by environmental resource managers...

Two Echinostome Species, Pegosomum bubulcum and Nephrostomum ramosum (Digenea: Echinostomatidae), from an Eastern Cattle Egret, Bubulcus ibis coromandus, in Republic of Korea

PubMed Central

Choe, Seongjun; Lee, Dongmin; Park, Hansol; Jeon, Hyeong-Kyu; Lee, Youngsun; Kim, Eunju; Na, Ki-Jeong; Eom, Keeseon S.

2016-01-01

We describe 2 echinostome species recovered from an Eastern cattle egret, Bubulcus ibis coromandus, from Cheongju-si (city), Chungcheongbuk-do (province), Korea. Total 72 Pegosomum bubulcum specimens were recovered from the bile duct. They were 7,566×2,938 μm in average size and had 27 collar spines with vitelline extension from anterior 1/3 level of the esophagus to mid-level of the posterior testis as characteristic features. Total 9 specimens of Nephrostomum ramosum were recovered in the small intestines of the bird. They were ribbon-shaped, 11,378×2,124 μm in average size, and morphologically variable in some organs, i.e., the number of collar spines (47-50), the shape of ovary and testes, and the extension of vitelline follicles. These morphological variations observed in a single host indicated that these features are not critical for the classification of Nephrostomum species and thus were reconsidered taxonomically as synonym of N. ramosum. This study is the first report documenting and describing both flukes and their associated genera in Korea. PMID:27658601

Two Echinostome Species, Pegosomum bubulcum and Nephrostomum ramosum (Digenea: Echinostomatidae), from an Eastern Cattle Egret, Bubulcus ibis coromandus, in Republic of Korea.

PubMed

Choe, Seongjun; Lee, Dongmin; Park, Hansol; Jeon, Hyeong-Kyu; Lee, Youngsun; Kim, Eunju; Na, Ki-Jeong; Eom, Keeseon S

2016-08-01

We describe 2 echinostome species recovered from an Eastern cattle egret, Bubulcus ibis coromandus, from Cheongju-si (city), Chungcheongbuk-do (province), Korea. Total 72 Pegosomum bubulcum specimens were recovered from the bile duct. They were 7,566×2,938 μm in average size and had 27 collar spines with vitelline extension from anterior 1/3 level of the esophagus to mid-level of the posterior testis as characteristic features. Total 9 specimens of Nephrostomum ramosum were recovered in the small intestines of the bird. They were ribbon-shaped, 11,378×2,124 μm in average size, and morphologically variable in some organs, i.e., the number of collar spines (47-50), the shape of ovary and testes, and the extension of vitelline follicles. These morphological variations observed in a single host indicated that these features are not critical for the classification of Nephrostomum species and thus were reconsidered taxonomically as synonym of N. ramosum. This study is the first report documenting and describing both flukes and their associated genera in Korea.

Shell thinning and pesticide residues in Texas aquatic bird eggs, 1970

USGS Publications Warehouse

King, K.A.; Flickinger, Edward L.; Hildebrand, H.H.

1978-01-01

Significant decreases in eggshell thickness were found in 15 of 22 species of aquatic birds in Texas in 1970. Shell thickness reductions of 9 to 15 percent were found in white pelicans (Pelecanus erythrorhynchos), brown pelicans (P .occidentalis), and great blue herons (Ardea herodias). DDT family compounds were found in all eggs, and mean residues ranged from 0.4 ppm in white ibis (Eudocimus albus) to 23.2 ppm in great egrets (Casmerodius albus). GDDT residues were negatively correlated with shell thickness in five species; PCBs were negatively correlated in two. Residues in marine birds were generally lower and more uniform than levels in birds feeding in fresh and brackish water. DDT and dieldrin residues were higher in eggs from colonies near agricultural areas where these insecticides were heavily used; higher PCB residues were consistently associated with urban and industrial areas. Populations of five species have declined and deserve continued study: brown pelican, reddish egret (Dichromanassa rufescens), white-faced ibis (Plegadis chihi), laughing gull (Larus atricilla), and Forster's tern (Sterna forsteri). Population trends of four other species were undetermined and should be followed closely in future years.

The tempo of human childhood: a maternal foot on the accelerator, a paternal foot on the brake.

PubMed

Kotler, Jennifer; Haig, David

2018-03-01

Relative to the life history of other great apes, that of humans is characterized by early weaning and short interbirth intervals (IBIs). We propose that in modern humans, birth until adrenarche, or the rise in adrenal androgens, developmentally corresponds to the period from birth until weaning in great apes and ancestral hominins. According to this hypothesis, humans achieved short IBIs by subdividing ancestral infancy into a nurseling phase, during which offspring fed at the breast, and a weanling phase, during which offspring fed specially prepared foods. Imprinted genes influence the timing of human weaning and adrenarche, with paternally expressed genes promoting delays in childhood maturation and maternally expressed genes promoting accelerated maturation. These observations suggest that the tempo of human development has been shaped by consequences for the fitness of kin, with faster development increasing maternal fitness at a cost to child fitness. The effects of imprinted genes suggest that the duration of the juvenile period (adrenarche until puberty) has also been shaped by evolutionary conflicts within the family. © 2018 The Authors Evolutionary Anthropology Published by Wiley Periodicals, Inc.

The tempo of human childhood: a maternal foot on the accelerator, a paternal foot on the brake

PubMed Central

Haig, David

2018-01-01

Abstract Relative to the life history of other great apes, that of humans is characterized by early weaning and short interbirth intervals (IBIs). We propose that in modern humans, birth until adrenarche, or the rise in adrenal androgens, developmentally corresponds to the period from birth until weaning in great apes and ancestral hominins. According to this hypothesis, humans achieved short IBIs by subdividing ancestral infancy into a nurseling phase, during which offspring fed at the breast, and a weanling phase, during which offspring fed specially prepared foods. Imprinted genes influence the timing of human weaning and adrenarche, with paternally expressed genes promoting delays in childhood maturation and maternally expressed genes promoting accelerated maturation. These observations suggest that the tempo of human development has been shaped by consequences for the fitness of kin, with faster development increasing maternal fitness at a cost to child fitness. The effects of imprinted genes suggest that the duration of the juvenile period (adrenarche until puberty) has also been shaped by evolutionary conflicts within the family. PMID:29575348

Investigating parameters participating in the infant respiratory control system attractor.

PubMed

Terrill, Philip I; Wilson, Stephen J; Suresh, Sadasivam; Cooper, David M; Dakin, Carolyn

2008-01-01

Theoretically, any participating parameter in a non-linear system represents the dynamics of the whole system. Taken's time delay embedding theory provides the fundamental basis for allowing non-linear analysis to be performed on physiological, time-series data. In practice, only one measurable parameter is required to be measured to convey an accurate representation of the system dynamics. In this paper, the infant respiratory control system is represented using three variables-a digitally sampled respiratory inductive plethysmography waveform, and the derived parameters tidal volume and inter-breath interval time series data. For 14 healthy infants, these data streams were analysed using recurrence plot analysis across one night of sleep. The measured attractor size of these variables followed the same qualitative trends across the nights study. Results suggest that the attractor size measures of the derived IBI and tidal volume are representative surrogates for the raw respiratory waveform. The extent to which the relative attractor sizes of IBI and tidal volume remain constant through changing sleep state could potentially be used to quantify pathology, or maturation of breathing control.

A framework to assess the impacts of climate change on stream health indicators in Michigan watersheds

NASA Astrophysics Data System (ADS)

Woznicki, S. A.; Nejadhashemi, A. P.; Tang, Y.; Wang, L.

2016-12-01

Climate change is projected to alter watershed hydrology and potentially amplify nonpoint source pollution transport. These changes have implications for fish and macroinvertebrates, which are often used as measures of aquatic ecosystem health. By quantifying the risk of adverse impacts to aquatic ecosystem health at the reach-scale, watershed climate change adaptation strategies can be developed and prioritized. The objective of this research was to quantify the impacts of climate change on stream health in seven Michigan watersheds. A process-based watershed model, the Soil and Water Assessment Tool (SWAT), was linked to adaptive neuro-fuzzy inferenced (ANFIS) stream health models. SWAT models were used to simulate reach-scale flow regime (magnitude, frequency, timing, duration, and rate of change) and water quality variables. The ANFIS models were developed based on relationships between the in-stream variables and sampling points of four stream health indicators: the fish index of biotic integrity (IBI), macroinvertebrate family index of biotic integrity (FIBI), Hilsenhoff biotic index (HBI), and number of Ephemeroptera, Plecoptera, and Trichoptera (EPT) taxa. The combined SWAT-ANFIS models extended stream health predictions to all watershed reaches. A climate model ensemble from the Coupled Model Intercomparison Project Phase 5 (CMIP5) was used to develop projections of changes to flow regime (using SWAT) and stream health indicators (using ANFIS) from a baseline of 1980-2000 to 2020-2040. Flow regime variables representing variability, duration of extreme events, and timing of low and high flow events were sensitive to changes in climate. The stream health indicators were relatively insensitive to changing climate at the watershed scale. However, there were many instances of individual reaches that were projected to experience declines in stream health. Using the probability of stream health decline coupled with the magnitude of the decline, maps of vulnerable stream ecosystems were developed, which can be used in the watershed management decision-making process.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wike, L.D.

Environmental impact can be difficult to assess, especially at the ecosystem level. Any impact assessment methodology that can give cost effective and timely results is highly desirable. Rapid bioassessment (RBA) is cost effective and produces timely results. Several types of RBA have been used at the Savannah River Site (SRS) to assess stream conditions, including the Index of Biotic Integrity (IBI) based on fish community characteristics, and various techniques using aquatic macroinvertebrate species diversity and abundance. In an attempt to broaden the applicability of the RBA concept, we have also begun to develop RBA techniques for seep-fed wetlands and terrestrialmore » habitats. These techniques will focus on vertebrate and macroinvertebrate assemblages for seep-fed wetlands and arthropod assemblages for terrestrial habitats. In situ bioassay is another technique that could be used for rapid and economical assessment of the effects of anthropogenic disturbance. We propose the development of two methods of in situ bioassay that can address bioavailability of constituents of concern. The use of caged bioassay organisms can be applied to terrestrial systems such as capped or existing waste sites using the common house cricket. Another proposed bioassay could use a resident species, such as the imported red fire ant, which is found in disturbed habitats and open areas such as waste sites. Combining in situ techniques with RBA methodologies has the potential to provide a comprehensive assessment of chemical and physical impacts to a wide range of ecosystem types.« less

Factors Affecting P Loads to Surface Waters: Comparing the Roles of Precipitation and Land Management Practices

NASA Astrophysics Data System (ADS)

Motew, M.; Booth, E.; Carpenter, S. R.; Kucharik, C. J.

2014-12-01

Surface water quality is a major concern in the Yahara watershed (YW) of southern Wisconsin, home to a thriving dairy industry, the city of Madison, and five highly valued lakes that are eutrophic. Despite management interventions to mitigate runoff, there has been no significant trend in P loading to the lakes since 1975. Increases in manure production and heavy rainfall events over this time period may have offset any effects of management. We developed a comprehensive, integrated modeling framework that can simulate the effects of multiple drivers on ecosystem services, including surface water quality. The framework includes process-based representation of terrestrial ecosystems (Agro-IBIS) and groundwater flow (MODFLOW), hydrologic routing of water and nutrients across the landscape (THMB), and assessment of lake water quality (YWQM). Biogeochemical cycling and hydrologic transport of P have been added to the framework to enable detailed simulation of P dynamics within the watershed, including interactions with climate and management. The P module features in-soil cycling of organic, inorganic, and labile forms of P; manure application, decomposition, and subsequent loss of dissolved P in runoff; loss of particulate-bound P with erosion; and transport of dissolved and particulate P within waterways. Model results will compare the effects of increased heavy rainfall events, increased manure production, and implementation of best management practices on P loads to the Yahara lakes.

The Nature of the X-Ray Binary IGR J19294+1816 from INTEGRAL, RXTE, and Swift Observations

NASA Technical Reports Server (NTRS)

Rodriquez, J.; Tomsick, J. A.; Bodaghee, A.; ZuritaHeras, J.-A.; Chaty, S.; Paizis, A.; Corbel, S.

2009-01-01

We report the results of a high-energy multi-instrumental campaign with INTEGRAL, RXTE, and Swift of the recently discovered INTEGRAL source IGR J19294+ 1816. The Swift/XRT data allow us to refine the position of the source to R.A. (J2000) = 19h 29m 55.9s, Decl. (J2000) = +18 deg 18 feet 38 inches . 4 (+/- 3 inches .5), which in turn permits us to identify a candidate infrared counterpart. The Swift and RXTE spectra are well fitted with absorbed power laws with hard (Gamma approx 1) photon indices. During the longest Swift observation, we obtained evidence of absorption in true excess to the Galactic value, which may indicate some intrinsic absorption in this source. We detected a strong (P = 40%) pulsations at 12.43781 (+/- 0.00003) s that we interpret as the spin period of a pulsar. All these results, coupled with the possible 117 day orbital period, point to IGR J19294+ 1816 being an high-mass X-ray binary (HMXB) with a Be companion star. However, while the long-term INTEGRAL/IBIS/ISGRI 18-40 keV light curve shows that the source spends most of its time in an undetectable state, we detect occurrences of short (2000-3000 s) and intense flares that are more typical of supergiant fast X-ray transients. We therefore cannot make firm conclusions on the type of system, and we discuss the possible implication of IGR J19294+1816 being an Supergiant Fast X-ray Transient (SFXT).

Linking Hydrologic Alteration to Biological Impairment in Urbanizing Streams of the Puget Lowland, Washington, USA1

PubMed Central

DeGasperi, Curtis L; Berge, Hans B; Whiting, Kelly R; Burkey, Jeff J; Cassin, Jan L; Fuerstenberg, Robert R

2009-01-01

We used a retrospective approach to identify hydrologic metrics with the greatest potential for ecological relevance for use as resource management tools (i.e., hydrologic indicators) in rapidly urbanizing basins of the Puget Lowland. We proposed four criteria for identifying useful hydrologic indicators: (1) sensitive to urbanization consistent with expected hydrologic response, (2) demonstrate statistically significant trends in urbanizing basins (and not in undeveloped basins), (3) be correlated with measures of biological response to urbanization, and (4) be relatively insensitive to potentially confounding variables like basin area. Data utilized in the analysis included gauged flow and benthic macroinvertebrate data collected at 16 locations in 11 King County stream basins. Fifteen hydrologic metrics were calculated from daily average flow data and the Pacific Northwest Benthic Index of Biological Integrity (B-IBI) was used to represent the gradient of response of stream macroinvertebrates to urbanization. Urbanization was represented by percent Total Impervious Area (%TIA) and percent urban land cover (%Urban). We found eight hydrologic metrics that were significantly correlated with B-IBI scores (Low Pulse Count and Duration; High Pulse Count, Duration, and Range; Flow Reversals, TQmean, and R-B Index). Although there appeared to be a great deal of redundancy among these metrics with respect to their response to urbanization, only two of the metrics tested – High Pulse Count and High Pulse Range – best met all four criteria we established for selecting hydrologic indicators. The increase in these high pulse metrics with respect to urbanization is the result of an increase in winter high pulses and the occurrence of high pulse events during summer (increasing the frequency and range of high pulses), when practically none would have occurred prior to development. We performed an initial evaluation of the usefulness of our hydrologic indicators by calculating and comparing hydrologic metrics derived from continuous hydrologic simulations of selected basin management alternatives for Miller Creek, one of the most highly urbanized basins used in our study. We found that the preferred basin management alternative appeared to be effective in restoring some flow metrics close to simulated fully forested conditions (e.g., TQmean), but less effective in restoring other metrics such as High Pulse Count and Range. If future research continues to support our hypothesis that the flow regime, particularly High Pulse Count and Range, is an important control of biotic integrity in Puget Lowland streams, it would have significant implications for stormwater management. PMID:22457566

KSC-02pd0435

NASA Image and Video Library

2002-03-29

KENNEDY SPACE CENTER, FLA. -- A mixed group of water birds searches for food in a lake near Kennedy Space Center. Identified are a Great Egret (background, with yellow beak), White Ibis (far right and center, orange beak), and Roseate Spoonbills. All prefer marshes, mud flats, ponds, lagoons and tidal flats as habitat. They are frequently found in the warm, coastal areas of Florida

Bilingual Education: Will the Benefits Last? Bilingual Education Paper Series, Vol. 5 No. 8.

ERIC Educational Resources Information Center

McConnell, Beverly B.

The effects of early education bilingual programs on subsequent educational achievement were studied with Spanish-speaking children of migrant farm workers in southern Texas. The children were enrolled in the Individualized Bilingual Instruction (IBI) program for at least one year from preschool through grade 3. About 30-50 children were tested at…

Creative Photography - Wildlife

NASA Image and Video Library

2016-03-25

Two juvenile roseate spoonbills are joined by a white ibis, foreground, as the trio wades in a shallow waterway at Merritt Island National Wildlife Refuge in Florida. NASA’s Kennedy Space Center shares boundaries with the refuge, which is home to more than 330 native and migratory bird species, along with 25 mammal, 117 fish, and 65 amphibian and reptile species.

Regional climate modeling over the Maritime Continent: Assessment of RegCM3-BATS1e and RegCM3-IBIS

NASA Astrophysics Data System (ADS)

Gianotti, R. L.; Zhang, D.; Eltahir, E. A.

2010-12-01

Despite its importance to global rainfall and circulation processes, the Maritime Continent remains a region that is poorly simulated by climate models. Relatively few studies have been undertaken using a model with fine enough resolution to capture the small-scale spatial heterogeneity of this region and associated land-atmosphere interactions. These studies have shown that even regional climate models (RCMs) struggle to reproduce the climate of this region, particularly the diurnal cycle of rainfall. This study builds on previous work by undertaking a more thorough evaluation of RCM performance in simulating the timing and intensity of rainfall over the Maritime Continent, with identification of major sources of error. An assessment was conducted of the Regional Climate Model Version 3 (RegCM3) used in a coupled system with two land surface schemes: Biosphere Atmosphere Transfer System Version 1e (BATS1e) and Integrated Biosphere Simulator (IBIS). The model’s performance in simulating precipitation was evaluated against the 3-hourly TRMM 3B42 product, with some validation provided of this TRMM product against ground station meteorological data. It is found that the model suffers from three major errors in the rainfall histogram: underestimation of the frequency of dry periods, overestimation of the frequency of low intensity rainfall, and underestimation of the frequency of high intensity rainfall. Additionally, the model shows error in the timing of the diurnal rainfall peak, particularly over land surfaces. These four errors were largely insensitive to the choice of boundary conditions, convective parameterization scheme or land surface scheme. The presence of a wet or dry bias in the simulated volumes of rainfall was, however, dependent on the choice of convection scheme and boundary conditions. This study also showed that the coupled model system has significant error in overestimation of latent heat flux and evapotranspiration from the land surface, and specifically overestimation of interception loss with concurrent underestimation of transpiration, irrespective of the land surface scheme used. Discussion of the origin of these errors is provided, with some suggestions for improvement.

[An experimental model of mass-type brain damage in the rat: expression of brain damage based on neurospecific enolase and protein S100B].

PubMed

Egea-Guerrero, J J; Murillo-Cabezas, F; Rodríguez-Rodríguez, A; Gordillo-Escobar, E; Revuelto-Rey, J; Muñoz-Sánchez, M A; León-Justel, A; Vilches-Arenas, A

2014-05-01

To determine whether a model of transient mass-type brain damage (MTBD) in the rat produces early release of neurospecific enolase (NSE) and protein S100B in peripheral blood, as an expression of the induced brain injury. An experimental study with a control group. Experimental operating room of the Institute of Biomedicine (IBiS) of Virgen del Rocío University Hospital (Seville, Spain). Fourteen adult Wistar rats. Blood was sampled at baseline, followed by: MTBD group, a trephine perforation was used to insert and inflate the balloon of a catheter at a rate of 500 μl/20 sec, followed by 4 blood extractions every 20 min. Control group, the same procedure as before was carried out, though without trephine perforation. Weight, early mortality, serum NSE and S100B concentration. Differences in NSE and S100B concentration were observed over time within the MTBD group (P<.001), though not so in the control group. With the exception of the baseline determination, differences were observed between the two groups in terms of the mean NSE and S100B values. Following MTBD, NSE and S100B progressively increased at all measurement timepoints, with r=0.765; P=.001 and r=0.628; P=.001, respectively. In contrast, the control group showed no such correlation for either biomarker. Serum NSE and S100B concentrations offer an early indication of brain injury affecting the gray and white matter in an experimental model of mass-type MTBD in the rat. Copyright © 2013 Elsevier España, S.L. and SEMICYUC. All rights reserved.

Symposium on Machine Processing of Remotely Sensed Data, Purdue University, West Lafayette, Ind., June 29-July 1, 1976, Proceedings

NASA Technical Reports Server (NTRS)

1976-01-01

Papers are presented on the applicability of Landsat data to water management and control needs, IBIS, a geographic information system based on digital image processing and image raster datatype, and the Image Data Access Method (IDAM) for the Earth Resources Interactive Processing System. Attention is also given to the Prototype Classification and Mensuration System (PROCAMS) applied to agricultural data, the use of Landsat for water quality monitoring in North Carolina, and the analysis of geophysical remote sensing data using multivariate pattern recognition. The Illinois crop-acreage estimation experiment, the Pacific Northwest Resources Inventory Demonstration, and the effects of spatial misregistration on multispectral recognition are also considered. Individual items are announced in this issue.

3 CFR 8632 - Proclamation 8632 of February 28, 2011. Death of Army Corporal Frank W. Buckles, the Last...

Code of Federal Regulations, 2012 CFR

2012-01-01

... Army Corporal Frank W. Buckles, the Last Surviving American Veteran of World War I 8632 Proclamation... Army Corporal Frank W. Buckles, the Last Surviving American Veteran of World War IBy the President of... W. Buckles, the last surviving American veteran of World War I, and in remembrance of the generation...

Ubi Materia, Ibi Geometria

DTIC Science & Technology

2000-09-29

of the birth of new physics and astronomy , and as contribution to obscure rhetoric in speculative quantum physics texts. In fact, not only...Copernican system has to be valid (Myaterium Cosmographicum). (One might, however, with justification doubt that the system presented by Copernicus in his...Kepleri astronomi Opera Omnia, Vol. I. Editit Christian Frisch. Frankofurti a.M.-Erlangae, Heyder & Zimmer 1858-1871. (Johannes Kepler, Gesammelte Werke

Evaluation of Flammability of Footwear Upper Materials. Patent and Regular Shoe Upper Leather vs. Porvair and Clarino Poromerics

DTIC Science & Technology

1984-09-01

leather is thus designated ŗ-ounce leather." -ll specimens, except the UL, had high-gloss polyurethane finishes. The UL ’eLi wr contained a...ITT Research Institute, October 1965, p. 18. 4.4 %d :i.bie 2. Comparativ ~e heat transfer values of shoe uppe materials vs. shoe upper materials with

Correlated microtiming deviations in jazz and rock music.

PubMed

Sogorski, Mathias; Geisel, Theo; Priesemann, Viola

2018-01-01

Musical rhythms performed by humans typically show temporal fluctuations. While they have been characterized in simple rhythmic tasks, it is an open question what is the nature of temporal fluctuations, when several musicians perform music jointly in all its natural complexity. To study such fluctuations in over 100 original jazz and rock/pop recordings played with and without metronome we developed a semi-automated workflow allowing the extraction of cymbal beat onsets with millisecond precision. Analyzing the inter-beat interval (IBI) time series revealed evidence for two long-range correlated processes characterized by power laws in the IBI power spectral densities. One process dominates on short timescales (t < 8 beats) and reflects microtiming variability in the generation of single beats. The other dominates on longer timescales and reflects slow tempo variations. Whereas the latter did not show differences between musical genres (jazz vs. rock/pop), the process on short timescales showed higher variability for jazz recordings, indicating that jazz makes stronger use of microtiming fluctuations within a measure than rock/pop. Our results elucidate principles of rhythmic performance and can inspire algorithms for artificial music generation. By studying microtiming fluctuations in original music recordings, we bridge the gap between minimalistic tapping paradigms and expressive rhythmic performances.

Characterization of Bacterial Communities in Venous Insufficiency Wounds by Use of Conventional Culture and Molecular Diagnostic Methods▿

PubMed Central

Tuttle, Marie S.; Mostow, Eliot; Mukherjee, Pranab; Hu, Fen Z.; Melton-Kreft, Rachael; Ehrlich, Garth D.; Dowd, Scot E.; Ghannoum, Mahmoud A.

2011-01-01

Microbial infections delay wound healing, but the effect of the composition of the wound microbiome on healing parameters is unknown. To better understand bacterial communities in chronic wounds, we analyzed debridement samples from lower-extremity venous insufficiency ulcers using the following: conventional anaerobic and aerobic bacterial cultures; the Ibis T5000 universal biosensor (Abbott Molecular); and 16S 454 FLX titanium series pyrosequencing (Roche). Wound debridement samples were obtained from 10 patients monitored clinically for at least 6 months, at which point 5 of the 10 sampled wounds had healed. Pyrosequencing data revealed significantly higher bacterial abundance and diversity in wounds that had not healed at 6 months. Additionally, Actinomycetales was increased in wounds that had not healed, and Pseudomonadaceae was increased in wounds that had healed by the 6-month follow-up. Baseline wound surface area, duration, or analysis by Ibis or conventional culture did not reveal significant differences between wounds that healed after 6 months and those that did not. Thus, pyrosequencing identified distinctive baseline characteristics of wounds that did not heal by the 6-month follow-up, furthering our understanding of potentially unique microbiome characteristics of chronic wounds. PMID:21880958

Using Structured e-Forum to Support the Legislation Formation Process

NASA Astrophysics Data System (ADS)

Xenakis, Alexandros; Loukis, Euripides

Many public policy problems are 'wicked', being characterised by high complexity, many heterogeneous views and conflicts among various stakeholders, and also lack of mathematically 'optimal' solutions and predefined algorithms for calculating them. The best approach for addressing such problems is through consultation and argumentation among stakeholders. The e-participation research has investigated and suggested several ICT tools for this purpose, such as e-forum, e-petition and e-community tools. This paper investigates the use of an advanced ICT tool, the structured e-forum, for addressing such wicked problems associated with the legislation formation. For this purpose we designed, implemented and evaluated two pilot e-consultations on legislation under formation in the Parliaments of Austria and Greece using a structured e-forum tool based on the Issue Based Information Systems (IBIS) framework. The conclusions drawn reveal the advantages offered by the structured e-forum, but also its difficulties as well.

The black hole binary V404 Cygni: a highly accreting obscured AGN analogue

NASA Astrophysics Data System (ADS)

Motta, S. E.; Kajava, J. J. E.; Sánchez-Fernández, C.; Giustini, M.; Kuulkers, E.

2017-06-01

Typical black hole binaries in outburst show spectral states and transitions, characterized by a clear connection between the inflow on to the black hole and outflows from its vicinity. The transient stellar mass black hole binary V404 Cyg apparently does not fit in this picture. Its outbursts are characterized by intense flares and intermittent plateau and low-luminosity states, with a dynamical intensity range of several orders of magnitude on time-scales of hours. During the 2015 June-July X-ray outburst a joint Swift and INTEGRAL observing campaign captured V404 Cyg in one of these plateau states. The simultaneous Swift/XRT + INTRGRAL/JEM-X + INTEGRAL/IBIS-ISGRI spectrum is reminiscent of that of obscured/absorbed active galactic nuclei (AGN). It can be modelled as a Comptonization spectrum, heavily absorbed by a partial covering, high column density material (NH ≈ 1-3 × 1024 cm-2), and a dominant reprocessed component, including a narrow iron Kα line. Such spectral distribution can be produced by a geometrically thick accretion flow able to launch a clumpy outflow, likely responsible for both the high intrinsic absorption and the intense reprocessed emission observed. Similarly to what happens in certain obscured AGN, the low-flux states might not be (solely) related to a decrease in the intrinsic luminosity, but could instead be caused by an almost complete obscuration of the inner accretion flow.

KSC-08pd4101

NASA Image and Video Library

2008-12-19

CAPE CANAVERAL, Fla. -- Roseate spoonbills and white ibis search the water for food at NASA's Kennedy Space Center in Florida. The center shares a boundary with the Merritt Island National Wildlife Refuge that includes salt-water estuaries, brackish marshes, hardwood hammocks and pine flatwoods. The diverse landscape provides habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. Photo credit: NASA/Tim Jacobs

A Source Manual of Raptors Occurring on Corps of Engineers Lands in the Pacific Northwest Region.

DTIC Science & Technology

1986-10-01

From Ibis 107(1), 1965.) In Norwegian with English summary. Pasanen, S., and S. Sulkava. 1971. On the nutritional biology of the rough- legged buzzard...Nebraska. Nebraska Bird Review 43(4): 78-79. lon"g, W. S. 1934. The western pigeon hawk in Yucatan and Kansas. Auk 51(4): 515-516. Lowery, G. H., Jr

Service Level Agreements in Service-Oriented Architecture Environments

DTIC Science & Technology

2008-09-01

the WS-Agreement [ Seidel 2007]. Indeed, core concepts of the WSLA were brought into the WS-Agreement, which also contains ideas from the Service...A Categorization Scheme for SLA Metrics. http://ibis.in.tum.de/staff/paschke/docs/MKWI2006_SLA_Paschke.pdf (2006). [ Seidel 2007] Seidel , Jan...addr-metadata-20070731/(2007). [Wohlstadter 2004] Wohlstadter, Eric; Tai, Stefan ; Mikalsen, Thomas; Rouvellou, Isabelle; & Devanbu, Premkumar

Comparison of breaking strength and shell thickness as evaluators of white-faced ibis eggshell quality

USGS Publications Warehouse

Henny, C.J.; Bennett, J.K.

1990-01-01

Data from a 1986 field study of white-faced ibis (Plegadis chihi) nesting at Carson Lake, Nevada, were used to compare the utility of eggshell strength measurement and eggshell thickness as indicators of eggshell quality. The ibis population had a history of reproductive failure correlated with elevated egg concentrations of p,p`DDE, hereafter referred to as DDE. Eggs from 80 nests (one egg/nest) were tested for shell strength and thickness. Egg contents were analyzed for organochlorines, mercury and selenium; productivity at each nest (minus one egg) was monitored in the field. DDE-DDT concentrations in the eggs ranged from none detected (less than 0.1) to 29 ppm (wet weight). Shell thickness and shell strength were both negatively correlated with DDE (0.60, 0.61, respectively), but shell strength deteriorated at a faster rate than shell thickness. Scanning electron micrographs indicated the deterioration in strength was related to changes in ultrastructure as well as to decreased thickness. Fourteen eggs with less than 0.40 ppm DDE were used to exemplify normal control eggs. Of the eggs with higher concentrations of DDE (i.e., greater than or equal to 0.40 ppm), 11 of 66 were thinner (greater than 2 SD below 'control' mean) than normal, 11 of 59 were weaker than normal and 7 eggs were cracked so their strength could not be tested, although thickness was measured. Therefore, 17% of the eggs with greater than or equal to 0.40 ppm DDE were thinner than normal and 27% were either weaker than normal or cracked. Further, six eggs (four with greater than or equal to 15 ppm DDE) did not have abnormally thin shells, but did have abnormally weak shells. Nests with abnormal test eggs (thinner, weaker or cracked) produced fewer young than nests with normal eggs. Use of the shell strength parameter provides additional information for better evaluations of reproductive problems. The potential utility of monitoring eggshell quality goes beyond evaluating effects of organochlorines since recent work indicates that other environmental hazards can affect shell quality.

Urbanized White Ibises (Eudocimus albus) as Carriers of Salmonella enterica of Significance to Public Health and Wildlife

PubMed Central

Hernandez, Sonia M.; Welch, Catharine N.; Peters, Valerie E.; Lipp, Erin K.; Curry, Shannon; Yabsley, Michael J.; Sanchez, Susan; Presotto, Andrea; Gerner-Smidt, Peter; Hise, Kelley B.; Hammond, Elizabeth; Kistler, Whitney M.; Madden, Marguerite; Conway, April L.; Kwan, Tiffany; Maurer, John J.

2016-01-01

Worldwide, Salmonella spp. is a significant cause of disease for both humans and wildlife, with wild birds adapted to urban environments having different opportunities for pathogen exposure, infection, and transmission compared to their natural conspecifics. Food provisioning by people may influence these factors, especially when high-density mixed species flocks aggregate. White Ibises (Eudocimus albus), an iconic Everglades species in decline in Florida, are becoming increasingly common in urbanized areas of south Florida where most are hand-fed. We examined the prevalence of Salmonella shedding by ibises to determine the role of landscape characteristics where ibis forage and their behavior, on shedding rates. We also compared Salmonella isolated from ibises to human isolates to better understand non-foodborne human salmonellosis. From 2010–2013, 13% (n = 261) adult/subadult ibises and 35% (n = 72) nestlings sampled were shedding Salmonella. The prevalence of Salmonella shedding by ibises significantly decreased as the percent of Palustrine emergent wetlands and herbaceous grasslands increased, and increased as the proportion of open-developed land types (e.g. parks, lawns, golf courses) increased, suggesting that natural ecosystem land cover types supported birds with a lower prevalence of infection. A high diversity of Salmonella serotypes (n = 24) and strain types (43 PFGE types) were shed by ibises, of which 33% of the serotypes ranked in the top 20 of high significance for people in the years of the study. Importantly, 44% of the Salmonella Pulsed-Field Gel Electrophoresis patterns for ibis isolates (n = 43) matched profiles in the CDC PulseNet USA database. Of these, 20% came from Florida in the same three years we sampled ibis. Importantly, there was a negative relationship between the amount of Palustrine emergent wetland and the number of Salmonella isolates from ibises that matched human cases in the PulseNet database (p = 0.056). Together, our results indicate that ibises are good indicators of salmonellae strains circulating in their environment and they have both the potential and opportunity to transmit salmonellae to people. Finally, they may act as salmonellae carriers to natural environments where other more highly-susceptible groups (nestlings) may be detrimentally affected. PMID:27768705

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.

PubMed

Emond-Rheault, Jean-Guillaume; Jeukens, Julie; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Colavecchio, Anna; Barrere, Virginie; Cadieux, Brigitte; Arya, Gitanjali; Bekal, Sadjia; Berry, Chrystal; Burnett, Elton; Cavestri, Camille; Chapin, Travis K; Crouse, Alanna; Daigle, France; Danyluk, Michelle D; Delaquis, Pascal; Dewar, Ken; Doualla-Bell, Florence; Fliss, Ismail; Fong, Karen; Fournier, Eric; Franz, Eelco; Garduno, Rafael; Gill, Alexander; Gruenheid, Samantha; Harris, Linda; Huang, Carol B; Huang, Hongsheng; Johnson, Roger; Joly, Yann; Kerhoas, Maud; Kong, Nguyet; Lapointe, Gisèle; Larivière, Line; Loignon, Stéphanie; Malo, Danielle; Moineau, Sylvain; Mottawea, Walid; Mukhopadhyay, Kakali; Nadon, Céline; Nash, John; Ngueng Feze, Ida; Ogunremi, Dele; Perets, Ann; Pilar, Ana V; Reimer, Aleisha R; Robertson, James; Rohde, John; Sanderson, Kenneth E; Song, Lingqiao; Stephan, Roger; Tamber, Sandeep; Thomassin, Paul; Tremblay, Denise; Usongo, Valentine; Vincent, Caroline; Wang, Siyun; Weadge, Joel T; Wiedmann, Martin; Wijnands, Lucas; Wilson, Emily D; Wittum, Thomas; Yoshida, Catherine; Youfsi, Khadija; Zhu, Lei; Weimer, Bart C; Goodridge, Lawrence; Levesque, Roger C

2017-01-01

The Salmonella Syst-OMICS consortium is sequencing 4,500 Salmonella genomes and building an analysis pipeline for the study of Salmonella genome evolution, antibiotic resistance and virulence genes. Metadata, including phenotypic as well as genomic data, for isolates of the collection are provided through the Salmonella Foodborne Syst-OMICS database (SalFoS), at https://salfos.ibis.ulaval.ca/. Here, we present our strategy and the analysis of the first 3,377 genomes. Our data will be used to draw potential links between strains found in fresh produce, humans, animals and the environment. The ultimate goals are to understand how Salmonella evolves over time, improve the accuracy of diagnostic methods, develop control methods in the field, and identify prognostic markers for evidence-based decisions in epidemiology and surveillance.

Coupling habitat suitability and ecosystem health with AEHRA to estimate E-flows under intensive human activities

NASA Astrophysics Data System (ADS)

Zhao, C. S.; Yang, S. T.; Zhang, H. T.; Liu, C. M.; Sun, Y.; Yang, Z. Y.; Zhang, Y.; Dong, B. E.; Lim, R. P.

2017-08-01

Sustaining adequate environmental flows (e-flows) is a key principle for maintaining river biodiversity and ecosystem health, and for supporting sustainable water resource management in basins under intensive human activities. But few methods could correctly relate river health to e-flows assessment at the catchment scale when they are applied to rivers highly impacted by human activities. An effective method is presented in this study to closely link river health to e-flows assessment for rivers at the catchment scale. Key fish species, as indicators of ecosystem health, were selected by using the foodweb model. A multi-species-based habitat suitability model (MHSI) was improved, and coupled with dominance of the key fish species as well as the Index of Biological Integrity (IBI) to enhance its accuracy in determining the fish-preferred key hydrologic habitat variables related to ecosystem health. Taking 5964 fish samples and concurrent hydrological habitat variables as the basis, the combination of key variables of flow-velocity and water-depth were determined and used to drive the Adapted Ecological Hydraulic Radius Approach (AEHRA) to study e-flows in a Chinese urban river impacted by intensive human activities. Results showed that upstream urbanization resulted in abnormal river-course geomorphology and consequently abnormal e-flows under intensive human activities. Selection of key species based on the foodweb and trophic levels of aquatic ecosystems can reflect a comprehensive requirement on e-flows of the whole aquatic ecosystem, which greatly increases its potential to be used as a guidance tool for rehabilitation of degraded ecosystems at large spatial scales. These findings have significant ramifications for catchment e-flows assessment under intensive human activities and for river ecohealth restoration in such rivers globally.

Evaluating the effects of future climate change and elevated CO2 on the water use efficiency in terrestrial ecosystems of China

USGS Publications Warehouse

Zhu, Q.; Jiang, H.; Peng, C.; Liu, J.; Wei, X.; Fang, X.; Liu, S.; Zhou, G.; Yu, S.

2011-01-01

Water use efficiency (WUE) is an important variable used in climate change and hydrological studies in relation to how it links ecosystem carbon cycles and hydrological cycles together. However, obtaining reliable WUE results based on site-level flux data remains a great challenge when scaling up to larger regional zones. Biophysical, process-based ecosystem models are powerful tools to study WUE at large spatial and temporal scales. The Integrated BIosphere Simulator (IBIS) was used to evaluate the effects of climate change and elevated CO2 concentrations on ecosystem-level WUE (defined as the ratio of gross primary production (GPP) to evapotranspiration (ET)) in relation to terrestrial ecosystems in China for 2009–2099. Climate scenario data (IPCC SRES A2 and SRES B1) generated from the Third Generation Coupled Global Climate Model (CGCM3) was used in the simulations. Seven simulations were implemented according to the assemblage of different elevated CO2 concentrations scenarios and different climate change scenarios. Analysis suggests that (1) further elevated CO2concentrations will significantly enhance the WUE over China by the end of the twenty-first century, especially in forest areas; (2) effects of climate change on WUE will vary for different geographical regions in China with negative effects occurring primarily in southern regions and positive effects occurring primarily in high latitude and altitude regions (Tibetan Plateau); (3) WUE will maintain the current levels for 2009–2099 under the constant climate scenario (i.e. using mean climate condition of 1951–2006 and CO2concentrations of the 2008 level); and (4) WUE will decrease with the increase of water resource restriction (expressed as evaporation ratio) among different ecosystems.

An algorithmic and information-theoretic approach to multimetric index construction

USGS Publications Warehouse

Schoolmaster, Donald R.; Grace, James B.; Schweiger, E. William; Guntenspergen, Glenn R.; Mitchell, Brian R.; Miller, Kathryn M.; Little, Amanda M.

2013-01-01

The use of multimetric indices (MMIs), such as the widely used index of biological integrity (IBI), to measure, track, summarize and infer the overall impact of human disturbance on biological communities has been steadily growing in recent years. Initially, MMIs were developed for aquatic communities using pre-selected biological metrics as indicators of system integrity. As interest in these bioassessment tools has grown, so have the types of biological systems to which they are applied. For many ecosystem types the appropriate biological metrics to use as measures of biological integrity are not known a priori. As a result, a variety of ad hoc protocols for selecting metrics empirically has developed. However, the assumptions made by proposed protocols have not be explicitly described or justified, causing many investigators to call for a clear, repeatable methodology for developing empirically derived metrics and indices that can be applied to any biological system. An issue of particular importance that has not been sufficiently addressed is the way that individual metrics combine to produce an MMI that is a sensitive composite indicator of human disturbance. In this paper, we present and demonstrate an algorithm for constructing MMIs given a set of candidate metrics and a measure of human disturbance. The algorithm uses each metric to inform a candidate MMI, and then uses information-theoretic principles to select MMIs that capture the information in the multidimensional system response from among possible MMIs. Such an approach can be used to create purely empirical (data-based) MMIs or can, optionally, be influenced by expert opinion or biological theory through the use of a weighting vector to create value-weighted MMIs. We demonstrate the algorithm with simulated data to demonstrate the predictive capacity of the final MMIs and with real data from wetlands from Acadia and Rocky Mountain National Parks. For the Acadia wetland data, the algorithm identified 4 metrics that combined to produce a -0.88 correlation with the human disturbance index. When compared to other methods, we find this algorithmic approach resulted in MMIs that were more predictive and comprise fewer metrics.

Estrogen-Induced Depurination of DNA: A Novel Target for Breast Cancer Prevention

DTIC Science & Technology

2008-05-01

incubation with Vectastain Elite avidin- biotin complex kit (Vector Laboratories), washed in PBS buffer, and incubated in peroxidase substrate solution...major efforts in prevention involve placebo-controlled trials of exemestane (MAP.3) involving almost 5,000 patients, and anastrazole (IBIS 2) that...and will compare the levels with those in serum from women with breast cancer. The Analytical Core is interacting with the other investigators in

KSC-08pd4103

NASA Image and Video Library

2008-12-19

CAPE CANAVERAL, Fla. -- Great white herons, roseate spoonbills and white ibis search the water for food at NASA's Kennedy Space Center in Florida. The center shares a boundary with the Merritt Island National Wildlife Refuge that includes salt-water estuaries, brackish marshes, hardwood hammocks and pine flatwoods. The diverse landscape provides habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. Photo credit: NASA/Tim Jacobs

KSC-08pd4102

NASA Image and Video Library

2008-12-19

CAPE CANAVERAL, Fla. -- A great white heron joins roseate spoonbills and white ibis searching the water for food at NASA's Kennedy Space Center in Florida. The center shares a boundary with the Merritt Island National Wildlife Refuge that includes salt-water estuaries, brackish marshes, hardwood hammocks and pine flatwoods. The diverse landscape provides habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. Photo credit: NASA/Tim Jacobs

Exploring the Ability of a Coarse-grained Potential to Describe the Stress-strain Response of Glassy Polystyrene

DTIC Science & Technology

2012-10-01

using the open-source code Large-scale Atomic/Molecular Massively Parallel Simulator ( LAMMPS ) (http://lammps.sandia.gov) (23). The commercial...parameters are proprietary and cannot be ported to the LAMMPS 4 simulation code. In our molecular dynamics simulations at the atomistic resolution, we...IBI iterative Boltzmann inversion LAMMPS Large-scale Atomic/Molecular Massively Parallel Simulator MAPS Materials Processes and Simulations MS

What do men want? Re-examining whether men benefit from higher fertility than is optimal for women

PubMed Central

Sear, Rebecca

2016-01-01

Several empirical observations suggest that when women have more autonomy over their reproductive decisions, fertility is lower. Some evolutionary theorists have interpreted this as evidence for sexual conflicts of interest, arguing that higher fertility is more adaptive for men than women. We suggest the assumptions underlying these arguments are problematic: assuming that women suffer higher costs of reproduction than men neglects the (different) costs of reproduction for men; the assumption that men can repartner is often false. We use simple models to illustrate that (i) men or women can prefer longer interbirth intervals (IBIs), (ii) if men can only partner with wives sequentially they may favour shorter IBIs than women, but such a strategy would only be optimal for a few men who can repartner. This suggests that an evolved universal male preference for higher fertility than women prefer is implausible and is unlikely to fully account for the empirical data. This further implies that if women have more reproductive autonomy, populations should grow, not decline. More precise theoretical explanations with clearly stated assumptions, and data that better address both ultimate fitness consequences and proximate psychological motivations, are needed to understand under which conditions sexual conflict over reproductive timing should arise. PMID:27022076

Correlated microtiming deviations in jazz and rock music

PubMed Central

Sogorski, Mathias; Geisel, Theo

2018-01-01

Musical rhythms performed by humans typically show temporal fluctuations. While they have been characterized in simple rhythmic tasks, it is an open question what is the nature of temporal fluctuations, when several musicians perform music jointly in all its natural complexity. To study such fluctuations in over 100 original jazz and rock/pop recordings played with and without metronome we developed a semi-automated workflow allowing the extraction of cymbal beat onsets with millisecond precision. Analyzing the inter-beat interval (IBI) time series revealed evidence for two long-range correlated processes characterized by power laws in the IBI power spectral densities. One process dominates on short timescales (t < 8 beats) and reflects microtiming variability in the generation of single beats. The other dominates on longer timescales and reflects slow tempo variations. Whereas the latter did not show differences between musical genres (jazz vs. rock/pop), the process on short timescales showed higher variability for jazz recordings, indicating that jazz makes stronger use of microtiming fluctuations within a measure than rock/pop. Our results elucidate principles of rhythmic performance and can inspire algorithms for artificial music generation. By studying microtiming fluctuations in original music recordings, we bridge the gap between minimalistic tapping paradigms and expressive rhythmic performances. PMID:29364920

Energy Expenditure and Metabolic Changes of Free-Flying Migrating Northern Bald Ibis.

PubMed

Bairlein, Franz; Fritz, Johannes; Scope, Alexandra; Schwendenwein, Ilse; Stanclova, Gabriela; van Dijk, Gertjan; Meijer, Harro A J; Verhulst, Simon; Dittami, John

2015-01-01

Many migrating birds undertake extraordinary long flights. How birds are able to perform such endurance flights of over 100-hour durations is still poorly understood. We examined energy expenditure and physiological changes in Northern Bald Ibis Geronticus eremite during natural flights using birds trained to follow an ultra-light aircraft. Because these birds were tame, with foster parents, we were able to bleed them immediately prior to and after each flight. Flight duration was experimentally designed ranging between one and almost four hours continuous flights. Energy expenditure during flight was estimated using doubly-labelled-water while physiological properties were assessed through blood chemistry including plasma metabolites, enzymes, electrolytes, blood gases, and reactive oxygen compounds. Instantaneous energy expenditure decreased with flight duration, and the birds appeared to balance aerobic and anaerobic metabolism, using fat, carbohydrate and protein as fuel. This made flight both economic and tolerable. The observed effects resemble classical exercise adaptations that can limit duration of exercise while reducing energetic output. There were also in-flight benefits that enable power output variation from cruising to manoeuvring. These adaptations share characteristics with physiological processes that have facilitated other athletic feats in nature and might enable the extraordinary long flights of migratory birds as well.

A surveillance network for meningococcal disease in Europe.

PubMed

Trotter, Caroline L; Chandra, Manosree; Cano, Rosa; Larrauri, Amparo; Ramsay, Mary E; Brehony, Carina; Jolley, Keith A; Maiden, Martin C J; Heuberger, Sigrid; Frosch, Matthias

2007-01-01

Between 1999 and 2004, the European Union Invasive Bacterial Infections Surveillance Network (EU-IBIS) received c. 50,000 reports of meningococcal disease from 27 participating countries. Analysis has demonstrated a major decline in the incidence of invasive disease in those countries that have introduced routine vaccination against serogroup C infection. The establishment of rapid reporting of W135 and B2a/B2b strains has been able to provide early reassurance that these strains are not emerging as major public health problems in Europe. Between September 2001 and February 2005, the EU-MenNet project offered further opportunities for enhancing this data resource. Collaborative projects included: improving the EU-IBIS website; reviewing case ascertainment in Europe; reviewing cost-effectiveness studies for meningococcal serogroup C conjugate (MCC) vaccination; international comparisons of MCC vaccine efficacy; and mathematical modelling studies. In addition, linking of data from the European Meningococcal Multi-locus Sequence Type Centre to epidemiological data was performed. Particular clonal complexes were found to be preferentially associated with certain serogroups. Case fatality was also found to vary with clonal complex, suggesting that genotype can be a marker for hypervirulence. The importance of close collaboration between networks of epidemiologists, microbiologists, and the wider scientific and public health community is demonstrated.

Dynamics in entangled polyethylene melts using coarse-grained models

NASA Astrophysics Data System (ADS)

Peters, Brandon L.; Grest, Gary S.; Salerno, K. Michael; Agrawal, Anupriya; Perahia, Dvora

Polymer dynamics creates distinctive viscoelastic behavior as a result of a coupled interplay of motion on multiple length scales. Capturing the broad time and length scales of polymeric motion however, remains a challenge. Using polyethylene (PE) as a model system, we probe the effects of the degree of coarse graining on polymer dynamics. Coarse-grained (CG) potentials are derived using iterative Boltzmann inversion (iBi) with 2-6 methyl groups per CG bead from all fully atomistic melt simulations for short chains. While the iBi methods produces non-bonded potentials which give excellent agreement for the atomistic and CG pair correlation functions, the pressure P = 100-500MPa for the CG model. Correcting for potential so P 0 leads to non-bonded models with slightly smaller effective diameter and much deeper minimum. However, both the pressure and non-pressure corrected CG models give similar results for mean squared displacement (MSD) and the stress auto correlation function G(t) for PE melts above the melting point. The time rescaling factor between CG and atomistic models is found to be nearly the same for both CG models. Transferability of potential for different temperatures was tested by comparing the MSD and G(t) for potentials generated at different temperatures.

Prevalent emm types and superantigen gene patterns of group A Streptococcus in Thailand.

PubMed

Paveenkittiporn, W; Nozawa, T; Dejsirilert, S; Nakagawa, I; Hamada, S

2016-03-01

Group A Streptococcus (GAS) are globally distributed bacterial pathogens. We examined the emm genotypes, which are important indicators of virulence, of 349 clinical GAS isolates collected using two surveillance systems, i.e. Invasive Bacterial Infection Surveillance (IBIS) from 2010 to 2011 (234 isolates) and routine surveillance of clinically isolated bacteria from various hospitals during 1996-2011 (115 isolates) in Thailand. The major emm genotypes in IBIS samples were emm44 (12·0%), emm104 (6·8%), emm22 (5·6%), and emm81 (5·6%), whereas only one isolate (0·4%) had the emm1 genotype, which is significantly more common in invasive cases in the Western world. In samples collected during routine surveillance, emm238 (10·4%), emm44 (8·7%), and emm165 (7·0%) were dominant. The major superantigen gene profiles were similar between the groups, and 30·1% of isolates did not possess the phage-encoded superantigens (speA, speC, speH, speI, speK, speL, speM, ssa). Although most isolates exhibited limited gene profiles, emm44 isolates had highly variable gene profiles (15 patterns). We conclude that emm44 is the predominant GAS genotype in Thailand, and isolates varied in superantigen gene profiles.

Reproductive parameters of female orangutans (Pongo pygmaeus wurmbii) 1971-2011, a 40-year study at Tanjung Puting National Park, Central Kalimantan, Indonesia.

PubMed

Galdikas, Biruté Mary; Ashbury, Alison

2013-01-01

This study presents reproductive parameter data gathered by direct observation over a 40-year period (1971-2011) of the provisioned free-ranging population of orangutans at Camp Leakey in Tanjung Puting National Park, Central Kalimantan, Indonesia. Age at first reproduction, interbirth interval (IBI), sex ratio at birth, and infant mortality for 19 female orangutans (11 first-generation wild-born ex-captive mothers and 8 second-generation mothers) are included in this analysis. Age at first reproduction among the first-generation mothers was similar to that among wild orangutans, while second-generation mothers had a significantly earlier age at first reproduction. IBIs were similar among first- and second-generation mothers and were significantly shorter than those recorded in studies of wild orangutan populations. There was an expected male-biased sex ratio at birth and a slightly higher than expected rate of infant mortality when compared to wild populations. Infant mortality was primarily seen among second-generation mothers who gave birth before the age of 12, and among first births of some first-generation mothers. These results lend support to the ecological energetics hypothesis, which predicts that increased diet quality leads to a faster rate of reproduction.

A comparison of heart rate variability, n-3 PUFA status and lipid mediator profile in age- and BMI-matched middle-aged vegans and omnivores.

PubMed

Pinto, Ana M; Sanders, Thomas A B; Kendall, Alexandra C; Nicolaou, Anna; Gray, Robert; Al-Khatib, Haya; Hall, Wendy L

2017-03-01

Low heart rate variability (HRV) predicts sudden cardiac death. Long-chain (LC) n-3 PUFA (C20-C22) status is positively associated with HRV. This cross-sectional study investigated whether vegans aged 40-70 years (n 23), whose diets are naturally free from EPA (20 : 5n-3) and DHA (22 : 6n-3), have lower HRV compared with omnivores (n 24). Proportions of LC n-3 PUFA in erythrocyte membranes, plasma fatty acids and concentrations of plasma LC n-3 PUFA-derived lipid mediators were significantly lower in vegans. Day-time interbeat intervals (IBI), adjusted for physical activity, age, BMI and sex, were significantly shorter in vegans compared with omnivores (mean difference -67 ms; 95 % CI -130, -3·4, P50 % and high-frequency power) were similarly lower in vegans, with no differences during sleep. In conclusion, vegans have higher 24 h SDNN, but lower day-time HRV and shorter day-time IBI relative to comparable omnivores. Vegans may have reduced availability of precursor markers for pro-resolving lipid mediators; it remains to be determined whether there is a direct link with impaired cardiac function in populations with low-n-3 status.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Zhen; Bian, Xin; Yang, Xiu

We construct effective coarse-grained (CG) models for polymeric fluids by employing two coarse-graining strategies. The first one is a forward-coarse-graining procedure by the Mori-Zwanzig (MZ) projection while the other one applies a reverse-coarse-graining procedure, such as the iterative Boltzmann inversion (IBI) and the stochastic parametric optimization (SPO). More specifically, we perform molecular dynamics (MD) simulations of star polymer melts to provide the atomistic fields to be coarse-grained. Each molecule of star polymer with internal degrees of freedom is coarsened into a single CG particle and the effective interactions between CG particles can be either evaluated directly from microscopic dynamics basedmore » on the MZ formalism, or obtained by the reverse methods, i.e., IBI and SPO. The forward procedure has no free parameters to tune and recovers the MD system faithfully. For the reverse procedure, we find that the parameters in CG models are not interchangeable. If the free parameters are properly selected, the reverse CG procedure also yields an effective potential. Moreover, we explain how an aggressive coarse-graining procedure introduces many-body effect, which makes the pairwise potential invalid for the same system at densities away from the training point. From this work, general guidelines for coarse-graining of polymeric fluids can be drawn.« less

Energy Expenditure and Metabolic Changes of Free-Flying Migrating Northern Bald Ibis

PubMed Central

Bairlein, Franz; Fritz, Johannes; Scope, Alexandra; Schwendenwein, Ilse; Stanclova, Gabriela; van Dijk, Gertjan; Meijer, Harro A. J.; Verhulst, Simon

2015-01-01

Many migrating birds undertake extraordinary long flights. How birds are able to perform such endurance flights of over 100-hour durations is still poorly understood. We examined energy expenditure and physiological changes in Northern Bald Ibis Geronticus eremite during natural flights using birds trained to follow an ultra-light aircraft. Because these birds were tame, with foster parents, we were able to bleed them immediately prior to and after each flight. Flight duration was experimentally designed ranging between one and almost four hours continuous flights. Energy expenditure during flight was estimated using doubly-labelled-water while physiological properties were assessed through blood chemistry including plasma metabolites, enzymes, electrolytes, blood gases, and reactive oxygen compounds. Instantaneous energy expenditure decreased with flight duration, and the birds appeared to balance aerobic and anaerobic metabolism, using fat, carbohydrate and protein as fuel. This made flight both economic and tolerable. The observed effects resemble classical exercise adaptations that can limit duration of exercise while reducing energetic output. There were also in-flight benefits that enable power output variation from cruising to manoeuvring. These adaptations share characteristics with physiological processes that have facilitated other athletic feats in nature and might enable the extraordinary long flights of migratory birds as well. PMID:26376193

Cloud cover estimation: Use of GOES imagery in development of cloud cover data base for insolation assessment

NASA Technical Reports Server (NTRS)

Huning, J. R.; Logan, T. L.; Smith, J. H.

1982-01-01

The potential of using digital satellite data to establish a cloud cover data base for the United States, one that would provide detailed information on the temporal and spatial variability of cloud development are studied. Key elements include: (1) interfacing GOES data from the University of Wisconsin Meteorological Data Facility with the Jet Propulsion Laboratory's VICAR image processing system and IBIS geographic information system; (2) creation of a registered multitemporal GOES data base; (3) development of a simple normalization model to compensate for sun angle; (4) creation of a variable size georeference grid that provides detailed cloud information in selected areas and summarized information in other areas; and (5) development of a cloud/shadow model which details the percentage of each grid cell that is cloud and shadow covered, and the percentage of cloud or shadow opacity. In addition, comparison of model calculations of insolation with measured values at selected test sites was accomplished, as well as development of preliminary requirements for a large scale data base of cloud cover statistics.

Tamoxifen for prevention of breast cancer: extended long-term follow-up of the IBIS-I breast cancer prevention trial.

PubMed

Cuzick, Jack; Sestak, Ivana; Cawthorn, Simon; Hamed, Hisham; Holli, Kaija; Howell, Anthony; Forbes, John F

2015-01-01

Four previously published randomised clinical trials have shown that tamoxifen can reduce the risk of breast cancer in healthy women at increased risk of breast cancer in the first 10 years of follow-up. We report the long-term follow-up of the IBIS-I trial, in which the participants and investigators remain largely masked to treatment allocation. In the IBIS-I randomised controlled trial, premenopausal and postmenopausal women 35-70 years of age deemed to be at an increased risk of developing breast cancer were randomly assigned (1:1) to receive oral tamoxifen 20 mg daily or matching placebo for 5 years. Patients were randomly assigned to the two treatment groups by telephone or fax according to a block randomisation schedule (permuted block sizes of six or ten). Patients and investigators were masked to treatment assignment by use of central randomisation and coded drug supply. The primary endpoint was the occurrence of breast cancer (invasive breast cancer and ductal carcinoma in situ), analysed by intention to treat. Cox proportional hazard models were used to assess breast cancer occurrence and mortality. The trial is closed to recruitment and active treatment is completed, but long-term follow-up is ongoing. This trial is registered with controlledtrials.com, number ISRCTN91879928. Between April 14, 1992, and March 30, 2001, 7154 eligible women recruited from genetics clinics and breast care clinics in eight countries were enrolled into the IBIS-I trial and were randomly allocated to the two treatment groups: 3579 to tamoxifen and 3575 to placebo. After a median follow up of 16.0 years (IQR 14.1-17.6), 601 breast cancers have been reported (251 [7.0%] in 3579 patients in the tamoxifen group vs 350 [9.8%] in 3575 women in the placebo group; hazard ratio [HR] 0.71 [95% CI 0.60-0.83], p<0.0001). The risk of developing breast cancer was similar between years 0-10 (226 [6.3%] in 3575 women in the placebo group vs 163 [4.6%] in 3579 women in the tamoxifen group; hazard ratio [HR] 0.72 [95% CI 0.59-0.88], p=0.001) and after 10 years (124 [3.8%] in 3295 women vs 88 [2.6%] in 3343, respectively; HR 0.69 [0.53-0.91], p=0.009). The greatest reduction in risk was seen in invasive oestrogen receptor-positive breast cancer (HR 0.66 [95% CI 0.54-0.81], p<0.0001) and ductal carcinoma in situ (0.65 [0.43-1.00], p=0.05), but no effect was noted for invasive oestrogen receptor-negative breast cancer (HR 1.05 [95% CI 0.71-1.57], p=0.8). These results show that tamoxifen offers a very long period of protection after treatment cessation, and thus substantially improves the benefit-to-harm ratio of the drug for breast cancer prevention. Cancer Research UK (UK) and the National Health and Medical Research Council (Australia). Copyright © 2015 Cuzick et al. Open Access article distributed under the terms of CC BY. Published by Elsevier Ltd. All rights reserved.

Toward a Model of Expert Knowledge Structure and Their Role in Cognitive Task Performance

DTIC Science & Technology

1993-11-01

ONR. I I ’Ibis project addressed the role of knowledge organization in skilled cognitive task performance. In particular, this work focused on three...aspects. I EDETERMKNOWLEDGES STRUCTURE MEASURES Figure 1. Knowledge Structure Domain. The work performed under this contract is divided into three...for knowledge structure development would lead to a more global training approach. As such, this effort attempted to define the scope of further work

Aspects of the breeding biology of the Cattle Egret (Bubulcus ibis) in Montserrat, West Indies, and its impact on nest vegetation

Treesearch

W.J. Arendt; A.I. Arendt

1988-01-01

Aspects of the Cattle Egret's reproductive ecology and habitat use in an insular environment were studied on Montserrat, West Indies. Average size of 290 nests (17.9 cm) was smaller than sizes reported in the literature and was attributed to a paucity of available nesting materials. We measured 330 eggs to determine: egg volume (24,117.04 mm3), fresh egg weight (...

A PC-based single-ADC multi-parameter data acquisition system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woodring, M.; Kegel, G.H.R.; Egan, J.J.

1995-10-01

A personal computer (PC) based mult parameter data acquisition system using the Microsoft Window operating environment has been designed and constructed. An IBI AT compatible personal computer with an Intel 486DX5 microprocessor was combined with a National Instruments ATIDIO 32 digital I/O card, a single Canberra 8713 ADC with 13-bit resolution and a modified Canberra 8223 8-input analog multiplexer to acquil data from experiments carried out at the UML Van de Graa accelerator. The accelerator data acquisition (ADAC) computer environment was programmed in Microsoft Visual BASIC for use i Windows. ADAC allows event-mode data acquisition with up to eight parametersmore » (modifiable to 64) and the simultaneous display parameters during acquisition. Additional features of ADAC include replay of event-mode data and graphical analysis/display of data. TV ADAC environment is easy to upgrade or expand, inexpensive 1 implement, and is specifically designed to meet the needs of nuclei spectroscopy.« less

Two giant outbursts of V0332+53 observed with INTEGRAL

NASA Astrophysics Data System (ADS)

Ferrigno, Carlo; Ducci, Lorenzo; Bozzo, Enrico; Kretschmar, Peter; Kühnel, Matthias; Malacaria, Christian; Pottschmidt, Katja; Santangelo, Andrea; Savchenko, Volodymyr; Wilms, Jörn

2016-10-01

Context. In July 2015, the high-mass X-ray binary V0332+53 underwent a giant outburst, a decade after the previous one. V0332+53 hosts a strongly magnetized neutron star. During the 2004-2005 outburst, an anti-correlation between the centroid energy of its fundamental cyclotron resonance scattering features (CRSFs) and the X-ray luminosity was observed. Aims: The long (≈100 d) and bright (Lx ≈ 1038 erg s-1) 2015 outburst provided the opportunity to study the unique properties of the fundamental CRSF during another outburst and to study its dependence on the X-ray luminosity. Methods: The source was observed by the INTEGRAL satellite for ~330 ks. We exploit the spectral resolution at high energies of the SPectrometer on INTEGRAL (SPI) and the Joint European X-ray Monitors to characterize its spectral properties, focusing in particular on the CRSF-luminosity dependence. We complement the data of the 2015 outburst with those collected by SPI in 2004-2005, which have so far been left unpublished. Results: We find a highly significant anti-correlation of the centroid energy of the fundamental CRSF and the 3-100 keV luminosity of E1 ∝ -0.095(8)L37 keV. This trend is observed for both outbursts. We confirm the correlation between the width of the fundamental CRSF and the X-ray luminosity previously found in the JEM-X and IBIS dataset of the 2004-2005 outburst. By exploiting the RXTE/ASM and Swift/BAT monitoring data, we also report on the detection of a ~34 d modulation superimposed on the mean profiles and roughly consistent with the orbital period of the pulsar. We discuss possible interpretations of such variability.

Design strategies for human & earth systems modeling to meet emerging multi-scale decision support needs

NASA Astrophysics Data System (ADS)

Spak, S.; Pooley, M.

2012-12-01

The next generation of coupled human and earth systems models promises immense potential and grand challenges as they transition toward new roles as core tools for defining and living within planetary boundaries. New frontiers in community model development include not only computational, organizational, and geophysical process questions, but also the twin objectives of more meaningfully integrating the human dimension and extending applicability to informing policy decisions on a range of new and interconnected issues. We approach these challenges by posing key policy questions that require more comprehensive coupled human and geophysical models, identify necessary model and organizational processes and outputs, and work backwards to determine design criteria in response to these needs. We find that modular community earth system model design must: * seamlessly scale in space (global to urban) and time (nowcasting to paleo-studies) and fully coupled on all component systems * automatically differentiate to provide complete coupled forward and adjoint models for sensitivity studies, optimization applications, and 4DVAR assimilation across Earth and human observing systems * incorporate diagnostic tools to quantify uncertainty in couplings, and in how human activity affects them * integrate accessible community development and application with JIT-compilation, cloud computing, game-oriented interfaces, and crowd-sourced problem-solving We outline accessible near-term objectives toward these goals, and describe attempts to incorporate these design objectives in recent pilot activities using atmosphere-land-ocean-biosphere-human models (WRF-Chem, IBIS, UrbanSim) at urban and regional scales for policy applications in climate, energy, and air quality.

Evaluating the spatiotemporal variations of water budget across China over 1951-2006 using IBIS model

USGS Publications Warehouse

Zhu, Q.; Jiang, H.; Liu, J.; Wei, X.; Peng, C.; Fang, X.; Liu, S.; Zhou, G.; Yu, S.; Ju, W.

2010-01-01

The Integrated Biosphere Simulator is used to evaluate the spatial and temporal patterns of the crucial hydrological variables [run-off and actual evapotranspiration (AET)] of the water balance across China for the period 1951–2006 including a precipitation analysis. Results suggest three major findings. First, simulated run-off captured 85% of the spatial variability and 80% of the temporal variability for 85 hydrological gauges across China. The mean relative errors were within 20% for 66% of the studied stations and within 30% for 86% of the stations. The Nash–Sutcliffe coefficients indicated that the quantity pattern of run-off was also captured acceptably except for some watersheds in southwestern and northwestern China. The possible reasons for underestimation of run-off in the Tibetan plateau include underestimation of precipitation and uncertainties in other meteorological data due to complex topography, and simplified representations of the soil depth attribute and snow processes in the model. Second, simulated AET matched reasonably with estimated values calculated as the residual of precipitation and run-off for watersheds controlled by the hydrological gauges. Finally, trend analysis based on the Mann–Kendall method indicated that significant increasing and decreasing patterns in precipitation appeared in the northwest part of China and the Yellow River region, respectively. Significant increasing and decreasing trends in AET were detected in the Southwest region and the Yangtze River region, respectively. In addition, the Southwest region, northern China (including the Heilongjiang, Liaohe, and Haihe Basins), and the Yellow River Basin showed significant decreasing trends in run-off, and the Zhemin hydrological region showed a significant increasing trend.

Effect of heterogeneousatmospheric CO2 on simulated global carbon budget

USGS Publications Warehouse

Zhang, Zhen; Jiang, Hong; Liu, Jinxun; Ju, Weimin; Zhang, Xiuying

2013-01-01

The effects of rising atmospheric carbon dioxide (CO2) on terrestrial carbon (C) sequestration have been a key focus in global change studies. As anthropological CO2 emissions substantially increase, the spatial variability of atmospheric CO2 should be considered to reduce the potential bias on C source and sink estimations. In this study, the global spatial–temporal patterns of near surface CO2 concentrations for the period 2003-2009 were established using the SCIAMACHY satellite observations and the GLOBALVIEW-CO2 field observations. With this CO2 data and the Integrated Biosphere Simulator (IBIS), our estimation of the global mean annual NPP and NEP was 0.5% and 7% respectively which differs from the traditional C sequestration assessments. The Amazon, Southeast Asia, and Tropical Africa showed higher C sequestration than the traditional assessment, and the rest of the areas around the world showed slightly lower C sequestration than the traditional assessment. We find that the variability of NEP is less intense under heterogeneous CO2 pattern on a global scale. Further studies of the cause of CO2 variation and the interactions between natural and anthropogenic processes of C sequestration are needed.

Psychological Analyses of Courageous Performance in Military Personnel

DTIC Science & Technology

1986-11-01

schedule HR heart rate IBI inter- beat interval N number of subjects NS not statistically significant P probability PCA principal components analysis RAQ...tones in the range of 400 to 600 Hz, set at a level of 60 dB, transmitted for 1 sec binaurally through earphones from a commercial oscillator. The...because of interference on the recording trace. Cardiac activity was measured in terms of heart rate (HR). The number of beats /minute was estimared by

DDT Contamination of Migrating Birds Using White-faced Ibis as an Indicator Species

DTIC Science & Technology

2005-02-01

en Alimentación y Desarrollo A.C. (Dr. Jaqueline Garcia) and the Universidad de Guadalajara (Dr. Eduardo Santana and Rodrigo Esparza). Mary Gustafson...Argos were processed by Earthspan and files created (.xls, .dbf, and shapefiles) for use in ArcGIS (ESRI GIS and Mapping Software ). Locations were...the latter. The critical task of collecting invertebrates and detailing avian associates in Mexico was ably performed by the Centro de Investigación

The Army Family Research Program: Program Development Increment Package Defense Information and General Officer Steering Committee Materials

DTIC Science & Technology

1990-08-01

If you want more, call us.] IBI. 6% of enlisted personnel and 5% of officers are riiarried to another soldier. This varies by sex and pay grade. For...societal openness about sex and accessibility pregnancy-related rates for teenagers. The Only one measure of sex education-the of contraceptive services...headed households correlates positively receiving sex educalion--proved signifi- betveen countries in explaining variation ir with abortion and pr

Salmonellosis in a captive heron colony

USGS Publications Warehouse

Locke, L.N.; Ohlendorf, H.M.; Shillinger, R.B.; Jareed, T.

1974-01-01

Salmonellosis caused by Salmonella typhimurium was one of several factors responsible for losses among young herons being held at the Patuxent Wildlife Research Center. The infection was demonstrated in five black-crowned night herons (Nycticorax nycticorax), three common egrets (Casmerodius albus), two little blue herons (Florida caerulea), one cattle egret (Bubulcus ibis), one snowy egret (Leucophoyx thula) and one Louisiana heron (Hydranassa tricolor). The disease was characterized by emaciation, focal liver necrosis, and frequently by a caseo-necrotic enteritis.

Lower Interbreath Interval Complexity Is Associated With Extubation Failure in Mechanically Ventilated Patients During Spontaneous Breathing Trials

DTIC Science & Technology

2010-06-01

patient tolerated the SBT, then measurement of respiratory rate (RR), rapid shallow breathing index (RSBI), and negative inspiratory force ( NIF ) were...no deaths in either cohort during the study period. The characteristics of the two groups, along with RR, duration of IBI, NIF , and RSBI calculated... NIF , and RSBI did not differ between groups, and that all subjects who were extubated had weaning parameters predictive of success. To explore the

Analysis of Long Bone and Vertebral Failure Patterns.

DTIC Science & Technology

1982-03-01

Roberts, B., 1976. Pathology of degenerative spondylosis in The Lumbar Spine and Back Pain (ed. M. Jayson), New York, Grune & Stratton, Inc., pp. 55-75...compressive loading failed by end plate or vertebral body fracture (Percy, 1957). The fractures were most common in the upper lumbar level, and the fracture...and upper lumbar regions which is supported Iby Perey’s findings (1957). The debris in the hematopoietic spaces appears Ito be bone fragments, but it

Corrosion-Inhibiting Coating Composition.

DTIC Science & Technology

1990-03-01

acrylic polymers were designed for compatibility with the alkyd resins and are useful therefore in preparing coatings of improved hardness...Hydrocarbon solvents 10 to 50 Componentam PatIbyWih Acrylic resin (B-67) 17.3 Silicone resin (SR-80M) 17.3 Silicone- alkyd resin 8.6 (V(ARKYD 385-50E...aichol e.6 VM&P Naphtha 17.1 Example II I ComponentPatbyWgh Acrylic resin 17.3 15 Silicone resin 17.3 Silicone- alkyd resin 8.6 Alkyl

Complex organic chemical balms of Pharaonic animal mummies.

PubMed

Buckley, Stephen A; Clark, Katherine A; Evershed, Richard P

2004-09-16

Millions of votive mummies of mammals, birds and reptiles were produced throughout ancient Egypt, with their popularity increasing during the reign of Amenhotep III (1400 bc) and thereafter. The scale of production has been taken to indicate that relatively little care and expense was involved in their preparation compared with human mummies. The accepted view is that animals were merely wrapped in coarse linen bandages and/or dipped in 'resin' before death. However, as with human mummification there was a range of qualities of treatments, and visual inspection of animal mummies suggests that the procedures used were often as complex as those used in humans (for example, evisceration and elaborate bandaging). Moreover, the ancient Egyptians treated animals with great respect, regarding them both as domestic pets and representatives of the gods; for example, the cat symbolized the goddess Bastet; the hawk, Horus; the ibis, Thoth, and so on. We report here the results of chemical investigations of tissues and wrappings from Pharaonic cat, hawk and ibis mummies using gas chromatography, gas chromatography-mass spectrometry, thermal desorption-gas chromatography-mass spectrometry and pyrolysis-gas chromatography-mass spectrometry. The analyses reveal the presence of highly complex mixtures of n-alkyl and cyclic biomarker components characteristic of fats, oils, beeswax, sugar gum, petroleum bitumen, and coniferous, Pistacia and possibly cedar resins. The mixture of balms is of comparable complexity to those used to mummify humans from the same period.

Seasonal differences of corticosterone metabolite concentrations and parasite burden in northern bald ibis (Geronticus eremita): The role of affiliative interactions

PubMed Central

Wascher, Claudia A. F.; Loretto, Matthias-Claudio; Palme, Rupert; Stoewe, Mareike; Kotrschal, Kurt; Frigerio, Didone

2018-01-01

The reproductive season is energetically costly as revealed by elevated glucocorticoid concentrations, constrained immune functions and an increased risk of infections. Social allies and affiliative interactions may buffer physiological stress responses and thereby alleviate associated effects. In the present study, we investigated the seasonal differences of immune reactive corticosterone metabolite concentrations, endoparasite burden (nematode eggs and coccidian oocysts) and affiliative interactions in northern bald ibis (Geronticus eremita), a critically endangered bird. In total, 43 individually marked focal animals from a free-ranging colony were investigated. The analyses included a description of initiated and received affiliative interactions, pair bond status as well as seasonal patterns of hormone and endoparasite levels. During the reproductive season, droppings contained parasite eggs more often and corticosterone metabolite levels were higher as compared to the period after reproduction. The excretion rate of endoparasite products was lower in paired individuals than in unpaired ones, but paired animals exhibited higher corticosterone metabolite concentrations than unpaired individuals. Furthermore, paired individuals initiated affiliative behaviour more frequently than unpaired ones. This suggests that the reproductive season influences the excretion patterns of endoparasite products and corticosterone metabolites and that affiliative interactions between pair partners may positively affect endoparasite burden during periods of elevated glucocorticoid levels. Being embedded in a pair bond may have a positive impact on individual immune system and parasite resistance. PMID:29364951

Exploratory research for the development of a computer aided software design environment with the software technology program

NASA Technical Reports Server (NTRS)

Hardwick, Charles

1991-01-01

Field studies were conducted by MCC to determine areas of research of mutual interest to MCC and JSC. NASA personnel from the Information Systems Directorate and research faculty from UHCL/RICIS visited MCC in Austin, Texas to examine tools and applications under development in the MCC Software Technology Program. MCC personnel presented workshops in hypermedia, design knowledge capture, and design recovery on site at JSC for ISD personnel. The following programs were installed on workstations in the Software Technology Lab, NASA/JSC: (1) GERM (Graphic Entity Relations Modeler); (2) gIBIS (Graphic Issues Based Information System); and (3) DESIRE (Design Recovery tool). These applications were made available to NASA for inspection and evaluation. Programs developed in the MCC Software Technology Program run on the SUN workstation. The programs do not require special configuration, but they will require larger than usual amounts of disk space and RAM to operate properly.

Potential use of fly ash to soil treatment in the Morava region

NASA Astrophysics Data System (ADS)

Bulíková, Lucia; Kresta, František; Rochovanský, Martin

2017-09-01

Soil treatment by binders is a standard technology and leads to optimal utilization of excavated soils in road constructions. Soil treatment is controlled in the Czech Republic by EN 14227-15 and Technical Requirement TP 94. Soil treatment using fly ash has not been performed in the Czech Republic, although there is a sufficient normative base. Fly ash produced by burning of hard coal in the Moravian region was tested as a potential binder. Fly ash samples were mixed with loess loams (CI). Tested siliceous fly ash of class F (ASTM C618) did not showed hydraulic properties but it showed positive effect on reducing maximum dry density of mixtures, increasing the IBI value (Immediate bearing index) and decreasing tendency to volume changes when the amount of fly ash was increased. The results of laboratory tests demonstrate the possibility of using fly ashes as a binder for soil treatment.

Integral's first look at the gamma-ray Universe

NASA Astrophysics Data System (ADS)

2002-12-01

The high-energy Universe is a violent place of exploding stars and their collapsed remnants such as the ultra-compressed neutron stars and, at the most extreme, all-consuming black holes. These celestial objects create X-rays and gamma rays that are many times more powerful than the optical radiation we can see with our eyes and optical telescopes. Integral’s Principal Investigators - the scientists responsible for the instruments on board - explain the crucial role that high-energy missions like Integral play in astronomy. “X-ray and gamma-ray astronomy is a pathfinder to unusual objects. At optical wavelengths, the number of stars is staggering. At X-ray and gamma-ray wavelengths, there are fewer objects, but the ones that remain are the really peculiar ones.” As a first test, Integral observed the Cygnus region of the sky, looking particularly at that enigmatic object, Cygnus X-1. Since the 1960s, we have known this object to be a constant generator of high-energy radiation. Most scientists believe that Cygnus X-1 is the site of a black hole, containing around five times the mass of our Sun and devouring a nearby star. Observing Cygnus X-1, which is relatively close by in our own Galaxy - ‘only’ 10 000 light years from us - is a very important step towards understanding black holes. This will also help understand the monstrous black hole - three million times the mass of our Sun - at the centre of our Galaxy. During the initial investigations, scientists had a pleasant surprise when Integral captured its first gamma-ray burst. These extraordinary celestial explosions are unpredictable, occurring from random directions about twice a day. Their precise origin is contentious: they could be the result of massive stars collapsing in the distant Universe or alternatively the result of a collision between two neutron stars. Integral promises to provide vital clues to solving this particular celestial mystery. To study these peculiarities, Integral carries two powerful gamma-ray instruments. It has a camera, or imager, called IBIS and a spectrometer, SPI. Spectrometers are used to measure the energy of the gamma rays received. Gamma-ray sources are often extremely variable and can fluctuate within minutes or seconds. It is therefore crucial to record data simultaneously in different wavelengths. To achieve this, Integral also carries an X-ray and an optical monitor (JEM-X and OMC). All four instruments will observe the same objects, at the same time. In this way they can capture fleeting events completely. Integral sends the data from all the instruments to the Integral Science Data Centre (ISDC) near Geneva, Switzerland, where they are processed for eventual release to the scientific community. “We have been optimising the instruments’ performance to produce the best overall science. We expect to be ready for astronomers around the world to use Integral by the end of the year,” says Arvind Parmar, acting Integral Project Scientist at ESA. “These images and spectra prove that Integral can certainly do the job it was designed to do, and more", which is to unlock some of the secrets of the high-energy Universe. Integral’s primary mission will last for two years, but it is carrying enough fuel to continue for five years, all being well. Notes to Editors Integral was launched on board a Russian Proton rocket from the Baikonur Cosmodrome, Kazakhstan, on 17 October 2002. The satellite was placed in a tilted orbit that looped from 600 to 153 000 kilometres above the Earth and back again. Integral’s own thrusters then steered the spacecraft, in a series of five manoeuvres, into its operational orbit, between 9 000 and 153 000 kilometres above the Earth. Although Integral orbits above the Earth's atmosphere and weather, it still has ‘space weather’ to contend with. Space weather consists of a constant rain of tiny particles that can temporarily blind detectors designed to register gamma radiation. “The flashes last about 0.1 seconds and have to be filtered out with software,” says Pietro Ubertini, IBIS Principal Investigator. JEM-X proved to be particularly susceptible to space weather and scientists had to ‘re-tune’ it. * * * Cygnus X-1 is one of the brightest high-energy emitters in the sky. Relative to its parent constellation, Cygnus - the Swan, Cygnus X-1 it is located about halfway along the row of stars that mark the Swan’s neck, at about 10 000 light years from Earth. Cygnus X-1 was discovered in the 1960s and is thought to be a black hole, ripping its companion star to pieces. The companion star, HDE 226868, is a blue supergiant with a surface temperature of around 31 000K. It orbits the black hole once every 5.6 days.

Unveiling the nature of INTEGRAL objects through optical spectroscopy. IX. Twenty two more identifications, and a glance into the far hard X-ray Universe

NASA Astrophysics Data System (ADS)

Masetti, N.; Parisi, P.; Jiménez-Bailón, E.; Palazzi, E.; Chavushyan, V.; Bassani, L.; Bazzano, A.; Bird, A. J.; Dean, A. J.; Galaz, G.; Landi, R.; Malizia, A.; Minniti, D.; Morelli, L.; Schiavone, F.; Stephen, J. B.; Ubertini, P.

2012-02-01

Since its launch in October 2002, the INTEGRAL satellite has revolutionized our knowledge of the hard X-ray sky thanks to its unprecedented imaging capabilities and source detection positional accuracy above 20 keV. Nevertheless, many of the newly-detected sources in the INTEGRAL sky surveys are of unknown nature. The combined use of available information at longer wavelengths (mainly soft X-rays and radio) and of optical spectroscopy on the putative counterparts of these new hard X-ray objects allows us to pinpoint their exact nature. Continuing our long-standing program that has been running since 2004, and using 6 different telescopes of various sizes together with data from an online spectroscopic survey, here we report the classification through optical spectroscopy of 22 more unidentified or poorly studied high-energy sources detected with the IBIS instrument onboard INTEGRAL. We found that 16 of them are active galactic nuclei (AGNs), while the remaining 6 objects are within our Galaxy. Among the identified extragalactic sources, the large majority (14) is made up of type 1 AGNs (i.e. with broad emission lines); of these, 6 lie at redshift larger than 0.5 and one (IGR J12319-0749) has z = 3.12, which makes it the second farthest object detected in the INTEGRAL surveys up to now. The remaining AGNs are of type 2 (that is, with narrow emission lines only), and one of the two cases is confirmed as a pair of interacting Seyfert 2 galaxies. The Galactic objects are identified as two cataclysmic variables, one high-mass X-ray binary, one symbiotic binary and two chromospherically active stars, possibly of RS CVn type. The main physical parameters of these hard X-ray sources were also determined using the multiwavelength information available in the literature. We thus still find that AGNs are the most abundant population among hard X-ray objects identified through optical spectroscopy. Moreover, we note that the higher sensitivity of the more recent INTEGRAL surveys is now enabling the detection of high-redshift AGNs, thus allowing the exploration of the most distant hard X-ray emitting sources and possibly of the most extreme blazars. Based on observations collected at the following observatories: Cerro Tololo Interamerican Observatory (Chile); Observatorio del Roque de los Muchachos of the Instituto de Astrofísica de Canarias (Canary Islands, Spain); Astronomical Observatory of Bologna in Loiano (Italy); Astronomical Observatory of Asiago (Italy); Observatorio Astronómico Nacional (San Pedro Mártir, Mexico); Anglo-Australian Observatory (Siding Spring, Australia).

KSC-2011-8380

NASA Image and Video Library

2011-12-21

CAPE CANAVERAL, Fla. – A glossy ibis searches for food beneath the algae-covered surface of a pond at Black Point Wildlife Drive, part of the Merritt Island National Wildlife Refuge. NASA's Kennedy Space Center shares a boundary with the refuge, consisting of 140,000 acres. The Refuge provides a wide variety of habitats: coastal dunes, saltwater estuaries and marshes, freshwater impoundments, scrub, pine flatwoods, and hardwood hammocks that provide habitat for more than 1,500 species of plants and animals, including about 331 species of birds. Photo credit: NASA/Jim Grossmann

Physiological Assessment of Aircraft Pilot Workload in Simulated Landing and Simulated Hostile Threat Environments

DTIC Science & Technology

1984-04-01

999949999999 17 * . TABLE 3.Inter- beat interval (131) changes over 14 blocks of 6 tone trials each f’or the 3...Tone3 were presented • .. 4 binaurally through Sennheiser Model HD 400 earphones. Tone duration was 200 msec at 65 dB. A *run* on this task was...canthus and superior ridge of the left eye. Heart rate (actually quantified as inter- beat -interal, or IBI, in msec) leads were placed on the left

Civil Defense in Central Europe and its Effects on Political and Military Leadership

DTIC Science & Technology

1981-06-05

Belgique in French (Brussels) 20 November 1970; translated and ited Tn West Europe Report No 1533 dated 29 Jan 1980 (JPRS No 75021). 4 Carl-Friedrlch von ...1979; translated and cited in West Europe Report No 1533 dated 29 Jan 1980 (JPRS No 75021). 25 LJ 26 12Wolfram von Raven, * (The Hole in the Security...Schwarz, Zivilschutz im Ausland II (Bonn: Bundesamt fuer Zivilschutz, 1977), page 156. 34 Ibi.d, page 153 and 155. 35 Hans Sperl , "Strahlenschutz in

Rapid and High-Throughput pan-Orthopoxvirus Detection and Identification using PCR and Mass Spectrometry

DTIC Science & Technology

2009-07-01

used in this manuscript. Several of the co- authors are or were Ibis employees. * E -mail: meshoo@ibisbio.com Introduction The orthopoxviruses (family...its Eradication. Geneva: World Health Organization. 4. Henderson DA, Inglesby TV, Bartlett JG, Ascher MS, Eitzen E , et al. (1999) Smallpox as a...of Rio de Janeiro: preliminary report. Mem Inst Oswaldo Cruz 95: 625–627. 15. Trindade GS, da Fonseca FG, Marques JT, Diniz S, Leite JA, et al. (2004

Pressure standards and sensors up to 3 GPa, actual state and development trends

NASA Astrophysics Data System (ADS)

Wisniewski, Roland; Molinar, Gianfranco

1999-04-01

Metrological problems connected with pressure standards and sensors up to 3 GPa as an introduction to the pressure measurements in the so-called “GIGAPASCAL REGION”, 1-100 GPa, are discussed. Re-examination of Bi I-Bi II phase transition pressure as a fixed point of the International Practical Pressure Scale and correction of the NaCl Pressure Scale is proposed. Well-established sensors as candidates for secondary pressure standards up to 3 GPa are briefly presented.

Intense Electron Beam Cyclotron Masers with Microsecond Pulselengths

DTIC Science & Technology

1991-12-20

wavooscmaw experiments to produce high power (tube power of - 1 - 8 MW), long-pulse (0.3 - 1.2 ps) micrwaves at hA cuen (0.1- 2 kA) and high voltns...the high frequency band (f > 14.05 GHz) is increased by more than 6 dB, compared with the power measured from the 80 hole apertured mask- anode . Ibis... anode where we observed high power microwave emission in the 2.1 - 6.6 GHz band. 5. Summary and conclusions Experiments have been performed to

TOF-SIMS for Rapid Nuclear Forensics Evaluation of Uranium Oxide Particles

DTIC Science & Technology

2011-03-01

Fraction U-238 nU U metal CRM 112-A NBL Metal Assay and Isotopic .000052458 .0072017 --- .9927458 nUO2 UO2 --- NBL Commercial material...0 .992745 dU U metal CRM 115 NBL Uranium Assay .0000076 .0020291 .0000322 .9979311 dUO2 UO2 --- IBI Labs Commercial material --- .002- .0035...U500* U3O8 CRM U500 NBL Isotopic .005181 .49696 .000755 .49711 U900* U3O8 CRM U900 NBL Isotopic .007777 .90196 .003327 .08693 *Sample

The 2016 Transit of Mercury Observed from Major Solar Telescopes and Satellites

NASA Astrophysics Data System (ADS)

Pasachoff, Jay M.; Schneider, Glenn; Gary, Dale; Chen, Bin; Sterling, Alphonse C.; Reardon, Kevin P.; Dantowitz, Ronald; Kopp, Greg A.

2016-10-01

We report observations from the ground and space of the 9 May 2016 transit of Mercury. We build on our explanation of the black-drop effect in transits of Venus based on spacecraft observations of the 1999 transit of Mercury (Schneider, Pasachoff, and Golub, Icarus 168, 249, 2004). In 2016, we used the 1.6-m New Solar Telescope at the Big Bear Solar Observatory with active optics to observe Mercury's transit at high spatial resolution. We again saw a small black-drop effect as 3rd contact neared, confirming the data that led to our earlier explanation as a confluence of the point-spread function and the extreme solar limb darkening (Pasachoff, Schneider, and Golub, in IAU Colloq. 196, 2004). We again used IBIS on the Dunn Solar Telescope of the Sacramento Peak Observatory, as A. Potter continued his observations, previously made at the 2006 transit of Mercury, at both telescopes of the sodium exosphere of Mercury (Potter, Killen, Reardon, and Bida, Icarus 226, 172, 2013). We imaged the transit with IBIS as well as with two RED Epic IMAX-quality cameras alongside it, one with a narrow passband. We show animations of our high-resolution ground-based observations along with observations from XRT on JAXA's Hinode and from NASA's Solar Dynamics Observatory. Further, we report on the limit of the transit change in the Total Solar Irradiance, continuing our interest from the transit of Venus TSI (Schneider, Pasachoff, and Willson, ApJ 641, 565, 2006; Pasachoff, Schneider, and Willson, AAS 2005), using NASA's SORCE/TIM and the Air Force's TCTE/TIM. See http://transitofvenus.info and http://nicmosis.as.arizona.edu.Acknowledgments: We were glad for the collaboration at Big Bear of Claude Plymate and his colleagues of the staff of the Big Bear Solar Observatory. We also appreciate the collaboration on the transit studies of Robert Lucas (Sydney, Australia) and Evan Zucker (San Diego, California). JMP appreciates the sabbatical hospitality of the Division of Geosciences and Planetary Sciences of the California Institute of Technology, and of Prof. Andrew Ingersoll there. The solar observations lead into the 2017 eclipse studies, for which JMP is supported by grants from the NSF AGS and National Geographic CRE.

SNBRFinder: A Sequence-Based Hybrid Algorithm for Enhanced Prediction of Nucleic Acid-Binding Residues.

PubMed

Yang, Xiaoxia; Wang, Jia; Sun, Jun; Liu, Rong

2015-01-01

Protein-nucleic acid interactions are central to various fundamental biological processes. Automated methods capable of reliably identifying DNA- and RNA-binding residues in protein sequence are assuming ever-increasing importance. The majority of current algorithms rely on feature-based prediction, but their accuracy remains to be further improved. Here we propose a sequence-based hybrid algorithm SNBRFinder (Sequence-based Nucleic acid-Binding Residue Finder) by merging a feature predictor SNBRFinderF and a template predictor SNBRFinderT. SNBRFinderF was established using the support vector machine whose inputs include sequence profile and other complementary sequence descriptors, while SNBRFinderT was implemented with the sequence alignment algorithm based on profile hidden Markov models to capture the weakly homologous template of query sequence. Experimental results show that SNBRFinderF was clearly superior to the commonly used sequence profile-based predictor and SNBRFinderT can achieve comparable performance to the structure-based template methods. Leveraging the complementary relationship between these two predictors, SNBRFinder reasonably improved the performance of both DNA- and RNA-binding residue predictions. More importantly, the sequence-based hybrid prediction reached competitive performance relative to our previous structure-based counterpart. Our extensive and stringent comparisons show that SNBRFinder has obvious advantages over the existing sequence-based prediction algorithms. The value of our algorithm is highlighted by establishing an easy-to-use web server that is freely accessible at http://ibi.hzau.edu.cn/SNBRFinder.

Organochlorine contaminants in cormorant, darter, egret, and ibis eggs from South Africa.

PubMed

Bouwman, Henk; Polder, Anuschka; Venter, Belinda; Skaare, Janneche U

2008-03-01

During the last 15 years, no research has been published on the levels of pesticides in bird eggs from South Africa, despite the high levels found previously. We analysed eggs from African darter, cattle egret, reed cormorant, African sacred ibis, as well as single eggs from some other species, and found HCB, DDTs, HCHs, chlordanes and PCBs at detectable levels. The presence of mirex in all species was unexpected, since this compound was never registered in South Africa. It also seemed as if terrestrial feeding birds had higher DDE:PCB ratios when compared with aquatic feeding birds. Except for chlordane, the African darter eggs had the highest levels of all other compounds (mean 370 and 300 ng g(-1) ww Sigma pesticides and Sigma PCBs, respectively). Multivariate analysis clearly distinguished the aquatic and terrestrially feeding birds on pollution profile. The African darter (aquatic feeding) and the cattle egret (terrestrial feeding) would be good indicator candidates. Eggshell thinning was detected in the African darter, and was associated with most of the compounds, including DDE and PCBs. We raise a concern that generally longer living birds in warmer climates, laying fewer eggs per clutch, might be at increased risk when compared with trophically similar birds exposed to equivalent levels of pollution in colder climates. Given the scarcity of water and the high biodiversity in Southern Africa, climate change will exert strong pressure, and any additional anthropogenic contamination at levels that can cause subtle behavioural, developmental and reproductive changes, can have serious effects.

Development and behavior of wild infant-juvenile East Bornean orangutans (Pongo pygmaeus morio) in Danum Valley.

PubMed

Mendonça, Renata S; Kanamori, Tomoko; Kuze, Noko; Hayashi, Misato; Bernard, Henry; Matsuzawa, Tetsuro

2017-01-01

Orangutans have a long period of immaturity and the longest inter-birth interval (IBI) of all mammals, which can be explained by their solitary life style, preventing the mother from rearing two offspring simultaneously (solitary life hypothesis) [corrected]. We collected data on mother-offspring dyads living in a primary lowland forest in Danum Valley, East Borneo in an effort to examine the developmental and behavioral patterns of the subspecies Pongo pygmaeus morio. We analyzed developmental changes in mother-offspring distance, contact, and activity budgets in orangutans ranging from 1 to 7 years of age. The results indicated decreased resting and playing with increasing age, whereas feeding, traveling and social play all increased significantly. Mothers' feeding and traveling time were good predictors of their offspring's feeding and traveling activities. Mother-offspring contact lasted longer in resting contexts; contact during traveling was almost non-existent after 4 years of age. Comparisons with previously published data on the Sumatran species Pongo abelli revealed no fundamental differences in these behavioral measures. However, a shorter association time with the mother after behavioral independence is documented for this East Bornean population in comparison to Sumatran populations. These results are best explained by the solitary life hypothesis, in agreement with previous studies. We suggest that environmental constraints in Bornean forests, as well as a lower population density, should be considered when interpreting the differences between Sumatran and Bornean orangutans in both the period of association with mother and the IBI.

An Overview of Heart Rate Variability Metrics and Norms

PubMed Central

Shaffer, Fred; Ginsberg, J. P.

2017-01-01

Healthy biological systems exhibit complex patterns of variability that can be described by mathematical chaos. Heart rate variability (HRV) consists of changes in the time intervals between consecutive heartbeats called interbeat intervals (IBIs). A healthy heart is not a metronome. The oscillations of a healthy heart are complex and constantly changing, which allow the cardiovascular system to rapidly adjust to sudden physical and psychological challenges to homeostasis. This article briefly reviews current perspectives on the mechanisms that generate 24 h, short-term (~5 min), and ultra-short-term (<5 min) HRV, the importance of HRV, and its implications for health and performance. The authors provide an overview of widely-used HRV time-domain, frequency-domain, and non-linear metrics. Time-domain indices quantify the amount of HRV observed during monitoring periods that may range from ~2 min to 24 h. Frequency-domain values calculate the absolute or relative amount of signal energy within component bands. Non-linear measurements quantify the unpredictability and complexity of a series of IBIs. The authors survey published normative values for clinical, healthy, and optimal performance populations. They stress the importance of measurement context, including recording period length, subject age, and sex, on baseline HRV values. They caution that 24 h, short-term, and ultra-short-term normative values are not interchangeable. They encourage professionals to supplement published norms with findings from their own specialized populations. Finally, the authors provide an overview of HRV assessment strategies for clinical and optimal performance interventions. PMID:29034226

Spatial clustering and halo occupation distribution modelling of local AGN via cross-correlation measurements with 2MASS galaxies

NASA Astrophysics Data System (ADS)

Krumpe, Mirko; Miyaji, Takamitsu; Coil, Alison L.; Aceves, Hector

2018-02-01

We present the clustering properties and halo occupation distribution (HOD) modelling of very low redshift, hard X-ray-detected active galactic nuclei (AGN) using cross-correlation function measurements with Two-Micron All Sky Survey galaxies. Spanning a redshift range of 0.007 < z < 0.037, with a median z = 0.024, we present a precise AGN clustering study of the most local AGN in the Universe. The AGN sample is drawn from the SWIFT/BAT 70-month and INTEGRAL/IBIS eight year all-sky X-ray surveys and contains both type I and type II AGN. We find a large-scale bias for the full AGN sample of b=1.04^{+0.10}_{-0.11}, which corresponds to a typical host dark matter halo mass of M_h^typ=12.84^{+0.22}_{-0.30} h^{-1} M_{⊙}. When split into low and high X-ray luminosity and type I and type II AGN subsamples, we detect no statistically significant differences in the large-scale bias parameters. However, there are differences in the small-scale clustering, which are reflected in the full HOD model results. We find that low and high X-ray luminosity AGN, as well as type I and type II AGN, occupy dark matter haloes differently, with 3.4σ and 4.0σ differences in their mean halo masses, respectively, when split by luminosity and type. The latter finding contradicts a simple orientation-based AGN unification model. As a by-product of our cross-correlation approach, we also present the first HOD model of 2MASS galaxies.

Regional Environmental Impacts of Biofuel Feedstock Production--Scaling Biogeochemical Cycles in Space and Time

NASA Astrophysics Data System (ADS)

Vanloocke, A.; Bernacchi, C.

2008-12-01

Recently there has been increasing socio-economic and scientific interest in the use of alternative sources of energy to offset the negative effects of current fossil fuel dependence and consequent greenhouse gas emissions. Currently, one of the most popular alternatives is to use ethanol produced from domestically grown crops for use as fuel in the transportation sector. In 2007, over 7.5 billion gallons of ethanol were produced in the U.S. from corn, a traditional food crop. Recent research indicates that it may be logistically impractical, ecologically counterproductive (i.e. a net carbon source), and economically devastating to produce ethanol from crops previously grown to produce food. The EBI (Energy Biosciences Institute, at University of California Berkley and University of Illinois Urbana-Champaign) is now conducting research to assess the ability of traditional crops as well as dedicated biofuel feedstocks (e.g. Panicum virgatum (switchgrass), Miscanthus x Giganteus (Miscanthus), and Saccharum spp (sugar cane)) to provide a productive and sustainable alternative to fossil fuel. This is an important step to take before implementing the large-scale growth necessary to meet U.S. energy needs .A process-based terrestrial ecosystem model, Agro-IBIS (Agricultural Integrated Biosphere Simulator) was adapted to simulate the growth of Miscanthus. The model was calibrated using data collected from sites at the University of Illinois south farms. Simulations indicated significant implications on the regional carbon and water budgets. Next this locally validated method will be extrapolated to simulate the regional scale growth of Miscanthus in the Midwestern U.S. and sugarcane in Brazil and a similar analysis will be conducted for switchgrass. The results should provide insight on optimal land-use decisions and legislation that regard meeting energy demands and mitigating climate change in the near future.

Estimating ecosystem carbon change in the Conterminous United States based on 40 years of land-use change and disturbance

NASA Astrophysics Data System (ADS)

Sleeter, B. M.; Rayfield, B.; Liu, J.; Sherba, J.; Daniel, C.; Frid, L.; Wilson, T. S.; Zhu, Z.

2016-12-01

Since 1970, the combined changes in land use, land management, climate, and natural disturbances have dramatically altered land cover in the United States, resulting in the potential for significant changes in terrestrial carbon storage and flux between ecosystems and the atmosphere. Processes including urbanization, agricultural expansion and contraction, and forest management have had impacts - both positive and negative - on the amount of natural vegetation, the age structure of forests, and the amount of impervious cover. Anthropogenic change coupled with climate-driven changes in natural disturbance regimes, particularly the frequency and severity of wildfire, together determine the spatio-temporal patterns of land change and contribute to changing ecosystem carbon dynamics. Quantifying this effect and its associated uncertainties is fundamental to developing a rigorous and transparent carbon monitoring and assessment programs. However, large-scale systematic inventories of historical land change and their associated uncertainties are sparse. To address this need, we present a newly developed modeling framework, the Land Use and Carbon Scenario Simulator (LUCAS). The LUCAS model integrates readily available high quality, empirical land-change data into a stochastic space-time simulation model representing land change feedbacks on carbon cycling in terrestrial ecosystems. We applied the LUCAS model to estimate regional scale changes in carbon storage, atmospheric flux, and net biome production in 84 ecological regions of the conterminous United States for the period 1970-2015. The model was parameterized using a newly available set of high resolution (30 m) land-change data, compiled from Landsat remote sensing imagery, including estimates of uncertainty. Carbon flux parameters for each ecological region were derived from the IBIS dynamic global vegetation model with full carbon cycle accounting. This paper presents our initial findings describing regional and temporal changes and variability in carbon storage and flux resulting from land use change and disturbance between 1973 and 2015. Additionally, based on stochastic simulations we quantify and present key sources of uncertainty in the estimation of terrestrial ecosystem carbon dynamics.

The influences of CO2 fertilization and land use change on the total aboveground biomass in Amazonian tropical forest

NASA Astrophysics Data System (ADS)

Castanho, A. D.; Zhang, K.; Coe, M. T.; Costa, M. H.; Moorcroft, P. R.

2012-12-01

Field observations from undisturbed old-growth Amazonian forest plots have recently reported on the temporal variation of many of the physical and chemical characteristics such as: physiological properties of leaves, above ground live biomass, above ground productivity, mortality and turnover rates. However, although this variation has been measured, it is still not well understood what mechanisms control the observed temporal variability. The observed changes in time are believed to be a result of a combination of increasing atmospheric CO2 concentration, climate variability, recovery from natural disturbance (drought, wind blow, flood), and increase of nutrient availability. The time and spatial variability of the fertilization effect of CO2 on above ground biomass will be explored in more detail in this work. A precise understanding of the CO2 effect on the vegetation is essential for an accurate prediction of the future response of the forest to climate change. To address this issue we simultaneously explore the effects of climate variability, historical CO2 and land-use change on total biomass and productivity using two different Dynamic Global Vegetation Models (DGVM). We use the Integrated Biosphere Simulator (IBIS) and the Ecosystem Demography Model 2.1 (ED2.1). Using land use changes database from 1700 - 2008 we reconstruct the total carbon balance in the Amazonian forest in space and time and present how the models predict the forest as carbon sink or source and explore why the model and field data diverge from each other. From 1970 to 2005 the Amazonian forest has been exposed to an increase of approximately 50 ppm in the atmospheric CO2 concentration. Preliminary analyses with the IBIS and ED2.1 dynamic vegetation model shows the CO2 fertilization effect could account for an increase in above ground biomass of 0.03 and 0.04 kg-C/m2/yr on average for the Amazon basin, respectively. The annual biomass change varies temporally and spatially from about 0.01 - 0.08 Kg-C/m2/yr, indicating a significant combined effect of the physical environment and climatological variability. The change in biomass due to CO2 fertilization in this study is comparable to the lower limit of the change that has been observed in the field (0.04 - 0.085 kg-C/m2/yr), which suggests that other factors must also be considered to explain the total amount of biomass change observed in the field.

DETECTION OF VERY LOW-FREQUENCY, QUASI-PERIODIC OSCILLATIONS IN THE 2015 OUTBURST OF V404 CYGNI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huppenkothen, D.; Younes, G.; Kouveliotou, C.

2017-01-01

In 2015 June, the black hole X-ray binary (BHXRB) V404 Cygni went into outburst for the first time since 1989. Here, we present a comprehensive search for quasi-periodic oscillations (QPOs) of V404 Cygni during its recent outburst, utilizing data from six instruments on board five different X-ray missions: Swift /XRT, Fermi /GBM, Chandra /ACIS, INTEGRAL ’s IBIS/ISGRI and JEM-X, and NuSTAR . We report the detection of a QPO at 18 mHz simultaneously with both Fermi /GBM and Swift /XRT, another example of a rare but slowly growing new class of mHz-QPOs in BHXRBs linked to sources with a highmore » orbital inclination. Additionally, we find a duo of QPOs in a Chandra /ACIS observation at 73 mHz and 1.03 Hz, as well as a QPO at 136 mHz in a single Swift /XRT observation that can be interpreted as standard Type-C QPOs. Aside from the detected QPOs, there is significant structure in the broadband power, with a strong feature observable in the Chandra observations between 0.1 and 1 Hz. We discuss our results in the context of current models for QPO formation.« less

Residue levels of organochlorines and mercury in Cattle Egret, Bubulcus ibis, eggs from the Faiyum Oasis, Egypt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mullie, W.C.; Massi, A.; Focardi, S.

1992-05-01

In Egypt, the Cattle Egret Bubulcus ibis is a common resident bird of the Nile Valley, the southern part of the Nile Delta, and the Suez Canal area. In the 1970s it disappeared as a breeding bird from the greater part of the Nile Delta, as did several other bird species, notably birds of prey. Only in recent years some of the species that had declined are markedly recovering, such as the Black-shouldered Kite Elanus caeruleus and the Cattle Egret. There is circumstancial evidence that these birds declined - at least partially - as a result of pesticide use inmore » the main cotton growing areas, but this has never been substantiated. The recent recovery of some bird populations, commencing in the 1980s, coincides with a general shift from the use of organochlorines (except for endrin and HCH which are still in use) towards synthetic pyrethroids, organophosphates and carbamates in Egyptian agriculture: 30 million kg of formulated product annually, of which 70% are applied to cotton. The number of breeding pairs of Cattle Egrets in a well-known colony at Giza (30[degrees].01'N 31[degrees].13'E) steadily declined from 2500 in 1977 to 1100 in 1984. Therefore, it was decided to collect some eggs for residue analysis. Cattle Egrets are not piscivores, such as most other egrets, but mainly insectivores. They feed in agricultural areas and likely are good indicators for pesticide use in these habitats. Based on gizzard contents analysis, Kirkpatrick (1925) concluded that Cattle Egrets in Egypt only occasionally take (semi) aquatic prey, such as toads, and further predominantly Orthoptera and Diptera on arable land. Various studies have been published with respect to pesticides or heavy metals in the Egyptian environment but, surprisingly, birds have been almost completely ignored. The data presented are the first residue analyses of bird eggs from an agricultural area in Egypt, and as such they can be considered as baseline data for future research. 36 refs., 2 tabs.« less

Identifying biotic integrity and water chemistry relations in nonwadeable rivers of Wisconsin: Toward the development of nutrient criteria

USGS Publications Warehouse

Weigel, B.M.; Robertson, Dale M.

2007-01-01

We sampled 41 sites on 34 nonwadeable rivers that represent the types of rivers in Wisconsin, and the kinds and intensities of nutrient and other anthropogenic stressors upon each river type. Sites covered much of United States Environmental Protection Agency national nutrient ecoregions VII-Mostly Glaciated Dairy Region, and VIII-Nutrient Poor, Largely Glaciated upper Midwest. Fish, macroinvertebrates, and three categories of environmental variables including nutrients, other water chemistry, and watershed features were collected using standard protocols. We summarized fish assemblages by index of biotic integrity (IBI) and its 10 component measures, and macroinvertebrates by 2 organic pollution tolerance and 12 proportional richness measures. All biotic and environmental variables represented a wide range of conditions, with biotic measures ranging from poor to excellent status, despite nutrient concentrations being consistently higher than reference concentrations reported for the regions. Regression tree analyses of nutrients on a suite of biotic measures identified breakpoints in total phosphorus (~0.06 mg/l) and total nitrogen (~0.64 mg/l) concentrations at which biotic assemblages were consistently impaired. Redundancy analyses (RDA) were used to identify the most important variables within each of the three environmental variable categories, which were then used to determine the relative influence of each variable category on the biota. Nutrient measures, suspended chlorophyll a, water clarity, and watershed land cover type (forest or row-crop agriculture) were the most important variables and they explained significant amounts of variation within the macroinvertebrate (R 2 = 60.6%) and fish (R 2 = 43.6%) assemblages. The environmental variables selected in the macroinvertebrate model were correlated to such an extent that partial RDA analyses could not attribute variation explained to individual environmental categories, assigning 89% of the explained variation to interactions among the categories. In contrast, partial RDA attributed much of the explained variation to the nutrient (25%) and other water chemistry (38%) categories for the fish model. Our analyses suggest that it would be beneficial to develop criteria based upon a suite of biotic and nutrient variables simultaneously to deem waters as not meeting their designated uses. ?? 2007 Springer Science+Business Media, LLC.

Identifying biotic integrity and water chemistry relations in nonwadeable rivers of Wisconsin: toward the development of nutrient criteria.

PubMed

Weigel, Brian M; Robertson, Dale M

2007-10-01

We sampled 41 sites on 34 nonwadeable rivers that represent the types of rivers in Wisconsin, and the kinds and intensities of nutrient and other anthropogenic stressors upon each river type. Sites covered much of United States Environmental Protection Agency national nutrient ecoregions VII--Mostly Glaciated Dairy Region, and VIII--Nutrient Poor, Largely Glaciated upper Midwest. Fish, macroinvertebrates, and three categories of environmental variables including nutrients, other water chemistry, and watershed features were collected using standard protocols. We summarized fish assemblages by index of biotic integrity (IBI) and its 10 component measures, and macroinvertebrates by 2 organic pollution tolerance and 12 proportional richness measures. All biotic and environmental variables represented a wide range of conditions, with biotic measures ranging from poor to excellent status, despite nutrient concentrations being consistently higher than reference concentrations reported for the regions. Regression tree analyses of nutrients on a suite of biotic measures identified breakpoints in total phosphorus (approximately 0.06 mg/l) and total nitrogen (approximately 0.64 mg/l) concentrations at which biotic assemblages were consistently impaired. Redundancy analyses (RDA) were used to identify the most important variables within each of the three environmental variable categories, which were then used to determine the relative influence of each variable category on the biota. Nutrient measures, suspended chlorophyll a, water clarity, and watershed land cover type (forest or row-crop agriculture) were the most important variables and they explained significant amounts of variation within the macroinvertebrate (R(2) = 60.6%) and fish (R(2) = 43.6%) assemblages. The environmental variables selected in the macroinvertebrate model were correlated to such an extent that partial RDA analyses could not attribute variation explained to individual environmental categories, assigning 89% of the explained variation to interactions among the categories. In contrast, partial RDA attributed much of the explained variation to the nutrient (25%) and other water chemistry (38%) categories for the fish model. Our analyses suggest that it would be beneficial to develop criteria based upon a suite of biotic and nutrient variables simultaneously to deem waters as not meeting their designated uses.

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

PubMed

Catalan, Pilar; Chalhoub, Boulos; Chochois, Vincent; Garvin, David F; Hasterok, Robert; Manzaneda, Antonio J; Mur, Luis A J; Pecchioni, Nicola; Rasmussen, Søren K; Vogel, John P; Voxeur, Aline

2014-07-01

The scientific presentations at the First International Brachypodium Conference (abstracts available at http://www.brachy2013.unimore.it) are evidence of the widespread adoption of Brachypodium distachyon as a model system. Furthermore, the wide range of topics presented (genome evolution, roots, abiotic and biotic stress, comparative genomics, natural diversity, and cell walls) demonstrates that the Brachypodium research community has achieved a critical mass of tools and has transitioned from resource development to addressing biological questions, particularly those unique to grasses. Copyright © 2014 Elsevier Ltd. All rights reserved.

Phthalocyaninatoruthenium(II), Hexakis(dimethylsulfoxide)Phthalocyaninatoruthenium(II), and Hexadis(dimethylsulfoxide-d6)phthalocyanin-atoruthenium(II), Three Highly Selective NMR Shift Reagents.

DTIC Science & Technology

1977-07-18

dimethylsu lfoxi de-d6) phthalocyanin — atoruthenium (II), Three Highly Selective NMR Shift Reagents ( ~‘ iby j \\ / Clement K. Choy and F•lalcolm E. Kenney...Running head : Phthalocyaninatorut henium( II) Shift Reagents I NTRODUCT ION Previously, work on FePc (Pc = phthalocyanine li gand , C32H16N8) show- ing...RuPc and dimethylsulfoxide -d 6 were re cted together and the product isolated, An nmr spectrum of the product showed only phthalocyanine resorar.ces

Solvolytic Degradation of Polymeric Propellant Binders

DTIC Science & Technology

1975-06-01

8217.: mv hae~ u.oc~l d inl txir TA13LEC r ’Catalyst, I ,c ?Iie. -(hour!" -Urnt:6o1 14 IBi.mnuth nitrate 7’ 3/4 ’Ledd mitra’ e 9 Dibutyltifi.,,11aurate =91...Contract NOO17-74-C-4335 0 0for D Naval Sea Systems Command Department of the Navy Center for Macromolecular Science Department of Chemistry University...polyuretbane b’nders in bulylamine was studicd: ,is,,u-h nitrate , lead acetate t.ihvdrate, zirconyl nixtate 04hydratc, amio;.ium _alts, l,|-bi(chloromethyl

Image Processing System

NASA Technical Reports Server (NTRS)

1986-01-01

Mallinckrodt Institute of Radiology (MIR) is using a digital image processing system which employs NASA-developed technology. MIR's computer system is the largest radiology system in the world. It is used in diagnostic imaging. Blood vessels are injected with x-ray dye, and the images which are produced indicate whether arteries are hardened or blocked. A computer program developed by Jet Propulsion Laboratory known as Mini-VICAR/IBIS was supplied to MIR by COSMIC. The program provides the basis for developing the computer imaging routines for data processing, contrast enhancement and picture display.

KSC-07pd0731

NASA Image and Video Library

2007-03-29

KENNEDY SPACE CENTER, FLA. -- White herons, blue herons, ibis and several other species of birds gather on a pond near Kennedy Space Center to hunt for food. KSC shares a boundary with the Merritt Island National Wildlife Refuge, which surrounds it. The refuge is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Ken Thornsley

The Physics of AGN, a Deep Understanding of the Quasar 3C 273

NASA Technical Reports Server (NTRS)

Courvoisier, T.; Bottcher, Markus

2004-01-01

Upon our successful AO-1 proposal no. 120023, the quasar 3C 273 has been observed with INTEGRAL in 3 epochs in January 2003. The first observation, on January 5, 2003, with a total INTEGRAL exposure of 1.2 x 10(exp 5) s, was simultaneous with RXTE and XMM- Newton observations. Two more INTEGRAL observations were carried out on January 11, 2003 (exposure: lo4 s) and January 17, 2003 (exposure: 1.1 x 10(exp 5) s). The source was detected with high significance by all INTEGRAL instruments, the OMC, JEM-X, SPI, and IBIS/ISGRI. Being one of the first INTEGRAL observations simultaneous with XMM and RXTE, our observations were also used to fix the cross calibration with those instruments. The combined spectrum resulting from the XMM-Newton, JEM-X, RXTE, SPI and ISGRI X-ray / soft gamma-ray observations is consistent with a straight power-law of photon index Gamma = (1.73 +/- 0.015) between 3 keV and at least 200 keV. A possible detection in the 200 keV - 500 keV band by SPI can not be confirmed with our observations. The normalization of the X/gamma-ray spectrum is (2.24 +/- 0.05) x 10(exp -2) photons /sq cm keV at 1 keV. The source showed a moderate amount of optical variability as observed with the OMC onboard INTEGRAL. No evidence for variability at X-rays and gamma-rays could be reported, which may have been a result of insufficient photon statistics. The X-/gamma-ray spectrum observed in our 2003 observations is consistent with previously measured and modelled broadband spectral energy distributions of 3C 273. It has been included in the U.S. lead Col's work on spectral and variability modelling of gamma-ray blazars, supporting the trend of flat-spectrum radio quasars such as 3C 273 being 7-ray dominated due to a strong contribution from Compton upscattering of external radiation by ultrarelativistic electrons in a relativistic jet. 3C 273 is a particularly convincing example for such a picture since it provides very direct evidence for a strong external radiation field by virtue of its obvious big blue bump, most likely originating in a very luminous accretion disk.

High-Throughput Epitope Binning Assays on Label-Free Array-Based Biosensors Can Yield Exquisite Epitope Discrimination That Facilitates the Selection of Monoclonal Antibodies with Functional Activity

PubMed Central

Abdiche, Yasmina Noubia; Miles, Adam; Eckman, Josh; Foletti, Davide; Van Blarcom, Thomas J.; Yeung, Yik Andy; Pons, Jaume; Rajpal, Arvind

2014-01-01

Here, we demonstrate how array-based label-free biosensors can be applied to the multiplexed interaction analysis of large panels of analyte/ligand pairs, such as the epitope binning of monoclonal antibodies (mAbs). In this application, the larger the number of mAbs that are analyzed for cross-blocking in a pairwise and combinatorial manner against their specific antigen, the higher the probability of discriminating their epitopes. Since cross-blocking of two mAbs is necessary but not sufficient for them to bind an identical epitope, high-resolution epitope binning analysis determined by high-throughput experiments can enable the identification of mAbs with similar but unique epitopes. We demonstrate that a mAb's epitope and functional activity are correlated, thereby strengthening the relevance of epitope binning data to the discovery of therapeutic mAbs. We evaluated two state-of-the-art label-free biosensors that enable the parallel analysis of 96 unique analyte/ligand interactions and nearly ten thousand total interactions per unattended run. The IBIS-MX96 is a microarray-based surface plasmon resonance imager (SPRi) integrated with continuous flow microspotting technology whereas the Octet-HTX is equipped with disposable fiber optic sensors that use biolayer interferometry (BLI) detection. We compared their throughput, versatility, ease of sample preparation, and sample consumption in the context of epitope binning assays. We conclude that the main advantages of the SPRi technology are its exceptionally low sample consumption, facile sample preparation, and unparalleled unattended throughput. In contrast, the BLI technology is highly flexible because it allows for the simultaneous interaction analysis of 96 independent analyte/ligand pairs, ad hoc sensor replacement and on-line reloading of an analyte- or ligand-array. Thus, the complementary use of these two platforms can expedite applications that are relevant to the discovery of therapeutic mAbs, depending upon the sample availability, and the number and diversity of the interactions being studied. PMID:24651868

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

PubMed Central

Freschi, Luca; Jeukens, Julie; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Laroche, Jérôme; Larose, Stéphane; Maaroufi, Halim; Fothergill, Joanne L.; Moore, Matthew; Winsor, Geoffrey L.; Aaron, Shawn D.; Barbeau, Jean; Bell, Scott C.; Burns, Jane L.; Camara, Miguel; Cantin, André; Charette, Steve J.; Dewar, Ken; Déziel, Éric; Grimwood, Keith; Hancock, Robert E. W.; Harrison, Joe J.; Heeb, Stephan; Jelsbak, Lars; Jia, Baofeng; Kenna, Dervla T.; Kidd, Timothy J.; Klockgether, Jens; Lam, Joseph S.; Lamont, Iain L.; Lewenza, Shawn; Loman, Nick; Malouin, François; Manos, Jim; McArthur, Andrew G.; McKeown, Josie; Milot, Julie; Naghra, Hardeep; Nguyen, Dao; Pereira, Sheldon K.; Perron, Gabriel G.; Pirnay, Jean-Paul; Rainey, Paul B.; Rousseau, Simon; Santos, Pedro M.; Stephenson, Anne; Taylor, Véronique; Turton, Jane F.; Waglechner, Nicholas; Williams, Paul; Thrane, Sandra W.; Wright, Gerard D.; Brinkman, Fiona S. L.; Tucker, Nicholas P.; Tümmler, Burkhard; Winstanley, Craig; Levesque, Roger C.

2015-01-01

The International Pseudomonas aeruginosa Consortium is sequencing over 1000 genomes and building an analysis pipeline for the study of Pseudomonas genome evolution, antibiotic resistance and virulence genes. Metadata, including genomic and phenotypic data for each isolate of the collection, are available through the International Pseudomonas Consortium Database (http://ipcd.ibis.ulaval.ca/). Here, we present our strategy and the results that emerged from the analysis of the first 389 genomes. With as yet unmatched resolution, our results confirm that P. aeruginosa strains can be divided into three major groups that are further divided into subgroups, some not previously reported in the literature. We also provide the first snapshot of P. aeruginosa strain diversity with respect to antibiotic resistance. Our approach will allow us to draw potential links between environmental strains and those implicated in human and animal infections, understand how patients become infected and how the infection evolves over time as well as identify prognostic markers for better evidence-based decisions on patient care. PMID:26483767

DOE Office of Scientific and Technical Information (OSTI.GOV)

Costa, Fatima Rubio da; Petrosian, Vahé; Kleint, Lucia

Spectroscopic observations of solar flares provide critical diagnostics of the physical conditions in the flaring atmosphere. Some key features in observed spectra have not yet been accounted for in existing flare models. Here we report a data-driven simulation of the well-observed X1.0 flare on 2014 March 29 that can reconcile some well-known spectral discrepancies. We analyzed spectra of the flaring region from the Interface Region Imaging Spectrograph ( IRIS ) in Mg ii h and k, the Interferometric BIdimensional Spectropolarimeter at the Dunn Solar Telescope (DST/IBIS) in H α 6563 Å and Ca ii 8542 Å, and the Reuven Ramatymore » High Energy Solar Spectroscope Imager ( RHESSI ) in hard X-rays. We constructed a multithreaded flare loop model and used the electron flux inferred from RHESSI data as the input to the radiative hydrodynamic code RADYN to simulate the atmospheric response. We then synthesized various chromospheric emission lines and compared them with the IRIS and IBIS observations. In general, the synthetic intensities agree with the observed ones, especially near the northern footpoint of the flare. The simulated Mg ii line profile has narrower wings than the observed one. This discrepancy can be reduced by using a higher microturbulent velocity (27 km s{sup −1}) in a narrow chromospheric layer. In addition, we found that an increase of electron density in the upper chromosphere within a narrow height range of ≈800 km below the transition region can turn the simulated Mg ii line core into emission and thus reproduce the single peaked profile, which is a common feature in all IRIS flares.« less

Role of alimentation in irritable bowel syndrome.

PubMed

Dapoigny, M; Stockbrügger, R W; Azpiroz, F; Collins, S; Coremans, G; Müller-Lissner, S; Oberndorff, A; Pace, F; Smout, A; Vatn, M; Whorwell, P

2003-01-01

Different food items are made responsible for irritable bowel syndrome (IBS) symptoms, but the physiopathology of IBS remains unclear. During a meeting in Nice, France, experts of the European Working Team of the IBiS Club discussed selected data regarding the relationships between alimentation, food items (including fibers) and IBS symptoms. Food allergy remains a difficult diagnosis, but medical and general history, presence of general symptoms such as skin rash, and hypersensitivity tests may help in achieving a positive diagnosis. On the other hand, food intolerance is more confusing because of the subjectivity of the relationship between ingestion of certain foods and the appearance of clinical symptoms. Different food items which are commonly implicated in adverse reactions mimicking IBS were found to be stimulants for the gut, suggesting that patients with predominant diarrhea IBS have to be carefully questioned about consumption of different kinds of food (i.e., coffee, alcohol, chewing gum, soft drinks) and not only on lactose ingestion. Gas production is discussed on the basis of retention of intestinal gas as well as on malabsorption of fermentable substrates. The role of a large amount of this kind of substrate reaching the colon is suggested as a potential mechanism of IBS-type symptoms in overeating patients. Regarding the role of fiber in IBS, the expert group concluded that fibers are not inert substances and that they could trigger pain or bloating in some IBS patients. Despite numerous reviews on this subject, it is very difficult to give general dietary advice to IBS patients, but dieteticians may have a positive role in managing such patients. Copyright 2003 S. Karger AG, Basel

Potent Plasmodium falciparum gametocytocidal activity of diaminonaphthoquinones, lead antimalarial chemotypes identified in an antimalarial compound screen.

PubMed

Tanaka, Takeshi Q; Guiguemde, W Armand; Barnett, David S; Maron, Maxim I; Min, Jaeki; Connelly, Michele C; Suryadevara, Praveen Kumar; Guy, R Kiplin; Williamson, Kim C

2015-03-01

Forty percent of the world's population is threatened by malaria, which is caused by Plasmodium parasites and results in an estimated 200 million clinical cases and 650,000 deaths each year. Drug resistance has been reported for all commonly used antimalarials and has prompted screens to identify new drug candidates. However, many of these new candidates have not been evaluated against the parasite stage responsible for transmission, gametocytes. If Plasmodium falciparum gametocytes are not eliminated, patients continue to spread malaria for weeks after asexual parasite clearance. Asymptomatic individuals can also harbor gametocyte burdens sufficient for transmission, and a safe, effective gametocytocidal agent could also be used in community-wide malaria control programs. Here, we identify 15 small molecules with nanomolar activity against late-stage gametocytes. Fourteen are diaminonaphthoquinones (DANQs), and one is a 2-imino-benzo[d]imidazole (IBI). One of the DANQs identified, SJ000030570, is a lead antimalarial candidate. In contrast, 94% of the 650 compounds tested are inactive against late-stage gametocytes. Consistent with the ineffectiveness of most approved antimalarials against gametocytes, of the 19 novel compounds with activity against known anti-asexual-stage targets, only 3 had any strong effect on gametocyte viability. These data demonstrate the distinct biology of the transmission stages and emphasize the importance of screening for gametocytocidal activity. The potent gametocytocidal activity of DANQ and IBI coupled with their efficacy against asexual parasites provides leads for the development of antimalarials with the potential to prevent both the symptoms and the spread of malaria. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

The column density distribution of hard X-ray radio galaxies

NASA Astrophysics Data System (ADS)

Panessa, F.; Bassani, L.; Landi, R.; Bazzano, A.; Dallacasa, D.; La Franca, F.; Malizia, A.; Venturi, T.; Ubertini, P.

2016-09-01

In order to investigate the role of absorption in active galactic nuclei (AGN) with jets, we have studied the column density distribution of a hard X-ray selected sample of radio galaxies, derived from the INTEGRAL/Imager on Board the Integral Satellite (IBIS) and Swift/The Burst Alert Telescope (BAT) AGN catalogues (˜7-10 per cent of the total AGN population). The 64 radio galaxies have a typical FR II radio morphology and are characterized by high 20-100 keV luminosities (from 1042 to 1046 erg s-1) and high Eddington ratios (log LBol/LEdd typically larger than ˜0.01). The observed fraction of absorbed AGN (NH > 1022 cm-2) is around 40 per cent among the total sample, and ˜75 per cent among type 2 AGN. The majority of obscured AGN are narrow-line objects, while unobscured AGN are broad-line objects, obeying to the zeroth-order predictions of unified models. A significant anti-correlation between the radio core dominance parameter and the X-ray column density is found. The observed fraction of Compton thick AGN is ˜2-3 per cent, in comparison with the 5-7 per cent found in radio-quiet hard X-ray selected AGN. We have estimated the absorption and Compton thick fractions in a hard X-ray sample containing both radio galaxies and non-radio galaxies and therefore affected by the same selection biases. No statistical significant difference was found in the absorption properties of radio galaxies and non-radio galaxies sample. In particular, the Compton thick objects are likely missing in both samples and the fraction of obscured radio galaxies appears to decrease with luminosity as observed in hard X-ray non-radio galaxies.

A review of the genus Agapetus Curtis (Trichoptera: Glossosomatidae) in eastern and central North America, with description of 12 new species

USGS Publications Warehouse

Etnier, David A.; Parker, Charles R.; Baxter, John T.; Long, Todd M.

2010-01-01

Twenty-nine species of caddisflies in the genus Agapetus Curtis in eastern and central North America are reviewed. Twelve are described as new species: Agapetus aphallus (known only from females); Agapetus baueri, Agapetus flinti, Agapetus harrisi, Agapetus hesperus, Agapetus ibis, Agapetus kirchneri, Agapetus meridionalis, Agapetus pegram, Agapetus ruiteri, Agapetus stylifer, and Agapetus tricornutus. Agapetus rossi Denning 1941 is recognized as a junior subjective synonym of Agapetus walkeri (Betten and Mosely 1940), new synonym. A key to males is provided, and species’ distributions are mapped.

Green Light! A Troop Carrier Squadron’s War from Normandy to the Rhine

DTIC Science & Technology

1993-01-01

cocks and grab your socks !” But once in a while-usually at 4: 30 or 5 : 00 a.m.- there would be a surprise “Everybody up! Short arm!” and we would...Most of us made the trip iby train-a tiring two-day affair in crowded and dirty coaches. For two tense weeks at Baer Field we continued the complex... socks which oth- erwise would have to be left behind. Those who were to fly abroad were, of course, less limited in what they could bring along; but

High Voltage Design Guide for Airborne Equipment

DTIC Science & Technology

1976-06-01

Capacitance (Capacity). That property of a system of conductors and dielec- trics which permits the storage of electricity when potential dii’ference exists...rjldtlve low prr•strPs ani’d t (.::;•t.rd t LJr e S Pol yI, rene. A thc r:".li1 ti c p!c.,duu.•’d by th [ olyref r i i it on of st yreute (vi nyl Poly i...by cutting continuous filaments, to short lengtn~s. Storage Life. The period nf time during .inich ,liquid re-i: or adi* dye ca3r. be sored anu remain

A 10 Day Period in IGR J16328-4726 from Swift/BAT Observations

NASA Astrophysics Data System (ADS)

Corbet, R. H. D.; Barthelmy, S. D.; Baumgartner, W. H.; Krimm, H. A.; Markwardt, C. B.; Skinner, G. K.; Tueller, J.

2010-04-01

IGR J16328-4726 is a little studied X-ray source. It is listed as a "blended" variable source in the 4th IBIS/ISGRI Catalog (Bird et al. 2010, ApJ Supp, 186, 1) but is not present in the Swift BAT 22 month all-sky survey (Tueller et al. 2010, ApJ Supp, 186, 378). Grupe et al. (2009, ATel #2075) report a flare detected with the Swift BAT which was followed up with Swift XRT observations. We have analyzed the Swift BAT 58 month survey (Baumgartner et al.

KSC-04PD-0897

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. White pelicans feed in a lake north of Kennedy Space Center. In the background are white ibis and great white herons. The Center shares a boundary with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

KSC-04PD-0889

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. Great white herons and white ibis (smaller, curved bill) wade in a lake north of Kennedy Space Center. The Center shares a boundary north, south and west with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

KSC-04PD-0895

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. White pelicans feed in a lake north of Kennedy Space Center. In the background are white ibis and great white herons. The Center shares a boundary with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

KSC-04PD-0896

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. White pelicans feed in a lake north of Kennedy Space Center. In the background are white ibis. The Center shares a boundary with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

AFSC Standardization Conference, 1553, 1589, 1750, 1760, Ada, November 18-20, 1980, Dayton Convention Center, Dayton, Ohio, Volume II. Proceedings Standards,

DTIC Science & Technology

1980-11-01

4006 DMAE Direct Memory Access Enable: ’Ibis command enables direct memory access (DMA). 4007 I)MAi) Direct Memory Access Disable: This command...72 DLI 72 DLR 72 DM 111 DMAD 30 DMAE 30 DMR 111 ONEG 103 DR 117 DS 104 OSAR 53 141 373 ’., M1L-STD-1750A (USAF) 2 July 1980 OSBI 29 OSCR 54 OSIC 48...in 4.7.7, the connectors shall show no defects detrimental to the operation of the connectors and shall A-7 461 -meet the subsequent test requirements

Assessing relationships between cattle egret migration and meteorology in the southwest Pacific: a review

NASA Astrophysics Data System (ADS)

Bridgman, H. A.; Maddock, M.; Geering, D. J.

The evolution of research into meteorological factors affecting the migration of the Cattle Egret (Ardeola ibis coromandus) in the southwestern Pacific region (Australia, New Zealand and the Tasman Sea) - from ground-based studies dependent on volunteer observers to a pilot satellite-tracking project - is reviewed and the results are related to the literature on bird migration. The predominant pattern is a seasonal migration from breeding colonies in southeast Queensland and northern New South Wales which takes place in stages along the east coastal plain under favourable meteorological conditions. Migration outward (southward) occurs in February through April and return to the breeding colonies occurs in October and November. Wintering destinations include Tasmania, southern Victoria and parts of New Zealand. Favourable meteorological conditions for migration southward include:moderate north to northwest airflow behind a high; light and variable winds in a high or col; and light and variable winds over New South Wales with moderate westerlies over Victoria and Tasmania. A satellite-tracking project helped to validate findings from the ground-based studies, provided additional information not otherwise obtainable, and demonstrated the potential of the technique to further clarify the relation between timing and staging of migration, and meteorology.

Influence of the water quality improvement on fish population in the Seine River (Paris, France) over the 1990-2013 period.

PubMed

Azimi, Sam; Rocher, Vincent

2016-01-15

Over the past 20 years, rules concerning wastewater treatment and quality of water discharged into the environment have changed considerably. Huge investments have been made in Paris conurbation to improve waste water treatment processes in accordance with the European Water Framework Directive. The interdepartmental association for sewage disposal in Paris conurbation (SIAAP) carried out a monitoring of both fish assemblages and water quality in the Seine River around the Paris conurbation (France) since the early 90's. The main goal of this study was to estimate the influence of the water quality improvement on fish. On one hand, the study confirmed the improvement of the water quality (dissolved oxygen, ammonia nitrogen, organic matter) in the Seine River, mostly focused downstream of Paris conurbation. On the other hand, an increase of the number of species occurred from 1990 (14) to 2013 (21). Moreover, changes in the river Seine assemblages happened over that 23-year period with emergence of sensitive species (ruffe, scalpin and pike-perch). The improvement of the water quality was also reported with respect to the Index of Biotic Integrity (IBI). However, no variation of pollutant concentrations in roach, eel and chub muscles has been observed. An exceedance of the environmental quality standards have even been reported all over this period as regards mercury and organochlorine.

Using benthic macroinvertebrate and fish communities as bioindicators of the Tanshui River basin around the greater Taipei area - multivariate analysis of spatial variation related to levels of water pollution.

PubMed

Young, Shuh-Sen; Yang, Hsi-Nan; Huang, Da-Ji; Liu, Su-Miao; Huang, Yueh-Han; Chiang, Chung-Ting; Liu, Jin-Wei

2014-07-14

After decades of strict pollution control and municipal sewage treatment, the water quality of the Tanshui River increased significantly after pollution mitigation as indicated by the River Pollution Index (RPI). The pollution level of the estuarine region decreased from severe pollution to mostly moderately impaired. The most polluted waters are presently restricted to a flow track length between 15-35 km relative to the river mouth. From July 2011 to September 2012, four surveys of fish and benthic macroinvertebrates were conducted at 45 sampling sites around the Tanshui River basin. The pollution level of all the study area indicated by the RPI could also be explained by the Family Biotic Index (FBI) and Biotic Index (BI) from the benthic macroinvertebrate community, and the Index of Biotic Integrity (IBI) of the fish community. The result of canonical correlation analysis between aquatic environmental factors and community structure indicated that the community structure was closely related to the level of water pollution. Fish species richness in the estuarine area has increased significantly in recent years. Some catadromous fish and crustaceans could cross the moderate polluted water into the upstream freshwater, and have re-colonized their populations. The benthic macroinvertebrate community relying on the benthic substrate of the estuarine region is still very poor, and the water layer was still moderately polluted.

Hard X-ray variability of V404 Cygni during the 2015 outburst

NASA Astrophysics Data System (ADS)

Sánchez-Fernández, C.; Kajava, J. J. E.; Motta, S. E.; Kuulkers, E.

2017-06-01

Aims: Hard X-ray spectra of black hole binaries (BHB) are produced by Comptonization of soft seed photons by hot electrons near the black hole. The slope of the resulting energy spectra is governed by two main parameters: the electron temperature (Te) and optical depth (τ) of the emitting plasma. Given the extreme brightness of V404 Cyg during the 2015 outburst, we aim to constrain the source spectral properties using an unprecedented time resolution in hard X-rays, and to monitor the evolution of Te and τ over the outburst. Methods: We have extracted and analysed 602 X-ray spectra of V404 Cyg obtained by the IBIS/ISGRI instrument on-board INTEGRAL during the 2015 June outburst, using effective integration times ranging between 8 and 176 000 s. We fitted the resulting spectra in the 20-200 keV energy range. Results: We find that while the light curve and soft X-ray spectra of V404 Cyg are remarkably different from those of other BHBs, the spectral evolution of V404 Cyg in hard X-rays and the relations between the spectral parameters are consistent with those observed in other BHBs. We identify a hard branch in which the Te is anti-correlated with the hard X-ray flux, and a soft flaring branch in which the relation reverses. In addition, we find that during long X-ray plateaus detected at intermediate fluxes, the thermal Comptonization models fail to describe the spectra. However, the statistics improve if we allow NH to vary freely in the fits to these spectra. Conclusions: We conclude that the hard branch in V404 Cyg is analogous to the canonical hard state of BHBs. V404 Cyg never seems to enter the canonical soft state, although the soft flaring branch bears resemblance to the BHB intermediate state and ultra-luminous state. The X-ray plateaus are likely the result of absorption by a Compton-thick outflow (NH ≳ 1024 cm-2) which reduces the observed flux by a factor of about 10. Variable covering of the central source by this Compton-thick material may be the reason for the complicated light curve variability, rather than intrinsic source variability. Based on observations with INTEGRAL, an ESA project with instruments and science data centre funded by ESA member states (especially the PI countries: Denmark, France, Germany, Italy, Switzerland, Spain) and with the participation of Russia and the USA.

Relationship of ZNF423 and CTSO with breast cancer risk in two randomised tamoxifen prevention trials.

PubMed

Brentnall, Adam R; Cuzick, Jack; Byers, Helen; Segal, Corrinne; Reuter, Caroline; Detre, Simone; Sestak, Ivana; Howell, Anthony; Powles, Trevor J; Newman, William G; Dowsett, Mitchell

2016-08-01

A case-control study from two randomised breast cancer prevention trials of tamoxifen and raloxifene (P-1 and P-2) identified single-nucleotide polymorphisms (SNPs) in or near genes ZNF423 and CTSO as factors which predict which women will derive most anti-cancer benefit from selective oestrogen receptor modulator (SERM) therapy. In this article, we further examine this question using blood samples from two randomised tamoxifen prevention trials: the International Breast Cancer Intervention Study I (IBIS-I) and the Royal Marsden trial (Marsden). A nested case-control study was designed with 2:1 matching in IBIS-I and 1:1 matching in Marsden. The OncoArray was used for genotyping and included two SNPs previously identified (rs8060157 in ZNF423 and rs10030044 near CTSO), and 102 further SNPs within the same regions. Overall, there were 369 cases and 662 controls, with 148 cases and 268 controls from the tamoxifen arms. Odds ratios were estimated by conditional logistic regression, with Wald 95 % confidence intervals. In the tamoxifen arms, the per-allele odds ratio for rs8060157 was 0.99 (95 %CI 0.73-1.34) and 1.00 (95 %CI 0.76-1.33) for rs10030044. In the placebo arm, the odds ratio was 1.10 (95 %CI 0.87-1.40) for rs8060157 and 1.01 (95 %CI 0.79-1.29) for rs10030044. There was no evidence to suggest that other SNPs in the surrounding regions of these SNPs might predict response to tamoxifen. Results from these two prevention trials do not support the earlier findings. rs8060157 in ZNF423 and rs10030044 near CTSO do not appear to predict response to tamoxifen.

Climatic and hydrologic influences on wading bird foraging patterns in Everglades National Park

NASA Astrophysics Data System (ADS)

Kwon, H.; Lall, U.; Engel, V.

2007-12-01

A goal of the Everglades National Park (ENP) restoration project is to ensure that the ecological health of the ENP improves as a direct result of management activities. Achieving hydrologic targets through the proper timing and amount of releases from control structures is a first step in the management process. Significant climate and weather variations in the region influence the ability to make releases and also determine the ecological outcomes. An assessment of the relative impact of climate variations and water releases to ENP in determining ecological outcomes is consequently a key to the evaluation of the success or failure of any restoration plan. Seasonal water depths in ENP depend on managed surface water releases from control structures and on direct rainfall. Here we link wading bird foraging patterns - a fundamental aspect of Everglades' ecology - to hydrologic management and climate variability in the National Park. Our objective is multifold. First, we relate the water levels at P33 and Shark Slough to the synoptic hydrologic conditions. Second, we develop a statistical model relating water levels at a station in central Shark Slough (P33) to wading birds foraging patterns throughout ENP. We attempt to apply a Hierarchical Bayesian scheme to a time series of wading bird to provide an uncertainty distribution of the population over specified time periods given hydrologic condition. Third, we develop a set of hydrologic index derived by recorded water level at P33 for a use of the statistical model of wading birds as an input. Our study will focus on great egret and white ibis that are major species among wading birds in the ENP. The great egret and white ibis prediction predicted by the model using the proposed predictors exhibits strong correlation with the observed streamflow, with an correlation 0.8.

Video-EEG recordings in full-term neonates of diabetic mothers: observational study.

PubMed

Castro Conde, José Ramón; González González, Nieves Luisa; González Barrios, Desiré; González Campo, Candelaria; Suárez Hernández, Yaiza; Sosa Comino, Elena

2013-11-01

To determine whether full-term newborn infants of diabetic mothers (IDM) present immature/disorganised EEG patterns in the immediate neonatal period, and whether there was any relationship with maternal glycaemic control. Cohort study with an incidental sample performed in a tertiary hospital neonatal unit. 23 IDM and 22 healthy newborns born between 2010 and 2013. All underwent video-EEG recording lasting >90 min at 48-72 h of life. We analysed the percentage of indeterminate sleep, transient sharp waves per hour and mature-for-gestational age EEG patterns (discontinuity, maximum duration of interburst interval (IBI), asynchrony, asymmetry, δ brushes, encoches frontales and α/θ rolandic activity). The group of IDM was divided into two subgroups according to maternal HbA1c: (1) HbA1c≥6% and (2) HbA1c<6%. Compared with healthy newborns, IDM presented significantly higher percentage of indeterminate sleep (57% vs 25%; p<0.001), discontinuity (2.5% vs 0%; p=0.044) and δ brushes in the bursts (6% vs 3%; p=0.024); higher duration of IBI (0.3 s vs 0 s; p=0.017); fewer encoches frontales (7/h vs 35/h; p<0.001), reduced θ/α rolandic activity (3/h vs 9/h; p<0.001); and more transient sharp waves (25/h vs 5/h; p<0.001). IDM with maternal HbA1c≥6% showed greater percentage of δ brushes in the burst (14% vs 4%; p=0.007). Full-term IDM newborns showed video-EEG features of abnormal development of brain function. Maternal HbA1c levels<6% during pregnancy could minimise the risk of cerebral dysmaturity.

Differences in the motor unit firing rates and amplitudes in relation to recruitment thresholds during submaximal contractions of the first dorsal interosseous between chronically resistance trained and physically active men.

PubMed

Sterczala, Adam J; Miller, Jonathan D; Trevino, Michael A; Dimmick, Hannah L; Herda, Trent J

2018-02-26

Previous investigations report no changes in motor unit (MU) firing rates during submaximal contractions following resistance training. These investigations did not account for MU recruitment or examine firing rates as a function of recruitment threshold (REC).Therefore, MU recruitment and firing rates in chronically resistance trained (RT) and physically active controls (CON) were examined. Surface electromyography signals were collected from the first dorsal interosseous (FDI) during isometric muscle actions at 40% and 70% maximal voluntary contraction (MVC). For each MU, force at REC, mean firing rate (MFR) during the steady force, and MU action potential amplitude (MUAP_AMP) were analyzed. For each individual and contraction, the MFRs were linearly regressed against REC, whereas, exponential models were applied to the MFR vs. MUAP_AMP and MUAP_AMP vs. REC relationships with the y-intercepts and slopes (linear) and A and B terms (exponential) calculated. For the 40% MVC, the RT group had less negative slopes (p=0.001) and lower y-intercepts (p=0.006) of the MFR vs. REC relationships and lower B terms (p=0.011) of the MUAP_AMP vs. REC relationships. There were no differences in either relationship between groups for the 70% MVC. During the 40% MVC, the RT had a smaller range of MFRs and MUAP_AMPS in comparison to the CON, likely due to reduced MU recruitment. The RT had lower MFRs and recruitment during the 40% MVC that may indicate a leftward shift in the force-frequency relationship, and thus require less excitation to the motoneuron pool to match the same relative force.

Multi-instrument study of chromospheric jets

NASA Astrophysics Data System (ADS)

Vanninathan, Kamalam; Madjarska, Maria; Doyle, Gerry

2012-03-01

The contribution to coronal heating by jets of various kinds like spicules, mottles, surges etc. originating in the solar chromosphere is an issue which is being currently largely explored. We analyse multi-instrument data taken in the plage area of active regions during dedicated observing runs with ROSA, IBIS at Sac Peak, USA, SOT, EIS/XRT/Hinode and AIA/SDO. The high-resolution and high-cadence data allow us to track chromospheric jets through the solar atmosphere and thus helps us to understand the dynamics and plasma properties of these features. The study is a forward step towards the exploration of the forthcoming state-of-art IRIS observations.

KSC-2009-2490

NASA Image and Video Library

2009-04-01

CAPE CANAVERAL, Fla. – Black vultures gather near woods in NASA's Kennedy Space Center in Florida. They are accompanied by a young white ibis. Ranging across the south and southeast, black vultures scavenge for both carrion and weak, sick or unprotected prey. They differ from turkey vultures in that they depend on vision to find food. They can be found all around Kennedy, on the ground or any higher landing spot, from buildings to utility poles. The center shares a boundary with the Merritt Island Wildlife Nature Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. Photo credit: NASA/Ben Smegelsky

Proceedings of NATO Advanced Research Workshop on the Formation, Transport and Consequences of Particles in Plasmas Held in Castera-Verduzan, France on 30 August-3 September 1993

DTIC Science & Technology

1993-09-03

ustl ill .I uclaisum ’cis iciths fim icr jc ltcic a~ It IiI, i cumin lc ct. ,il filmgm Ii mgiir tcc .uiictcc I ill \\c~tlm i the~ c K swienccc ,t c...when gas- rticl lieonly counts are low, is cvidence that thermal stress plays Elecrodean important role. Even a short idle period for the system will...Ai fcr s, slitem Since tlat, implies ih;;i thermal stress would he- Ibis phenomntion bhis been insvesirgatet anid not added lomher. at direct plasilla

KSC-04PD-0892

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. This lake north of Kennedy Space Center attracts a myriad of birds, such as the white ibis (left), roseate spoonbill (center) and little blue heron (right) seen here. The Center shares a boundary north, south and west with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

KSC-04pd0892

NASA Image and Video Library

2004-04-05

KENNEDY SPACE CENTER, FLA. - This lake north of Kennedy Space Center attracts a myriad of birds, such as the white ibis (left), roseate spoonbill (center) and little blue heron (right) seen here. The Center shares a boundary north, south and west with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

[Review of dynamic global vegetation models (DGVMs)].

PubMed

Che, Ming-Liang; Chen, Bao-Zhang; Wang, Ying; Guo, Xiang-Yun

2014-01-01

Dynamic global vegetation model (DGVM) is an important and efficient tool for study on the terrestrial carbon circle processes and vegetation dynamics. This paper reviewed the development history of DGVMs, introduced the basic structure of DGVMs, and the outlines of several world-widely used DGVMs, including CLM-DGVM, LPJ, IBIS and SEIB. The shortages of the description of dynamic vegetation mechanisms in the current DGVMs were proposed, including plant functional types (PFT) scheme, vegetation competition, disturbance, and phenology. Then the future research directions of DGVMs were pointed out, i. e. improving the PFT scheme, refining the vegetation dynamic mechanism, and implementing a model inter-comparison project.

Broad-band characteristics of seven new hard X-ray selected cataclysmic variables

NASA Astrophysics Data System (ADS)

Bernardini, F.; de Martino, D.; Mukai, K.; Russell, D. M.; Falanga, M.; Masetti, N.; Ferrigno, C.; Israel, G.

2017-10-01

We present timing and spectral analysis of a sample of seven hard X-ray selected cataclysmic variable candidates based on simultaneous X-ray and optical observations collected with XMM-Newton, complemented with Swift/BAT and INTEGRAL /IBIS hard X-ray data and ground-based optical photometry. For six sources, X-ray pulsations are detected for the first time in the range of ˜296-6098 s, identifying them as members of the magnetic class. Swift J0927.7-6945, Swift J0958.0-4208, Swift J1701.3-4304, Swift J2113.5+5422 and possibly PBC J0801.2-4625 are intermediate polars (IPs), while Swift J0706.8+0325 is a short (1.7 h) orbital period polar, the 11th hard X-ray-selected identified so far. X-ray orbital modulation is also observed in Swift J0927.7-6945 (5.2 h) and Swift J2113.5+5422 (4.1 h). Swift J1701.3-4304 is discovered as the longest orbital period (12.8 h) deep eclipsing IP. The spectra of the magnetic systems reveal optically thin multitemperature emission between 0.2 and 60 keV. Energy-dependent spin pulses and the orbital modulation in Swift J0927.7-6945 and Swift J2113.5+5422 are due to intervening local high-density absorbing material (NH ˜ 1022 - 23 cm-2). In Swift J0958.0-4208 and Swift J1701.3-4304, a soft X-ray blackbody (kT ˜ 50 and ˜80 eV) is detected, adding them to the growing group of `soft' IPs. White dwarf masses are determined in the range of ˜ 0.58-1.18 M⊙, indicating massive accreting primaries in five of them. Most sources accrete at rates lower than the expected secular value for their orbital period. Formerly proposed as a long-period (9.4 h) nova-like CV, Swift J0746.3-1608 shows peculiar spectrum and light curves suggesting either an atypical low-luminosity CV or a low-mass X-ray binary.

Sunspot seismology: accounting for magnetohydrodynamic wave processes using imaging spectropolarimetry

NASA Astrophysics Data System (ADS)

Rajaguru, S. P.

Effects of acoustic wave absorption, mode conversion and transmission by a sunspot on the helioseismic inferences are widely discussed, yet accounting for them has proved difficult for lack of a consistent framework within helioseismic modelling. Here, following a discussion of problems and issues that the near-surface magnetohydrodynamics hosts through a complex interplay of radiative transfer, measurement issues, and MHD wave processes, I present some possibilities entirely from observational analyses based on imaging spectropolarimetry. In particular, I present some results on wave evolution as a function of observation height and inclination of magnetic field to the vertical, derived from a high-cadence imaging spectropolarimetric observation of a sunspot and its surroundings using the instrument IBIS (NSO/Sac Peak, USA). These observations were made in magnetically sensitive (Fe I 6173 Å) and insensitive (Fe I 7090 Å) upper photospheric absorption lines. Wave travel time contributions from within the photospheric layers of a sunspot estimated here would then need to be removed from the inversion modelling procedure, that does not have the provision to account for them.

A Biochar Classification System and Associated Test Methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Camps-Arbestain, Marta; Amonette, James E.; Singh, Balwant

2015-02-18

In this chapter, a biochar classification system related to its use as soil amendment is proposed. This document builds upon previous work and constrains its scope to materials with properties that satisfy the criteria for biochar as defined by either the International Biochar Initiative (IBI) Biochar Standards or the European Biochar Community (EBC) Standards, and it is intended to minimise the need for testing in addition to those required according to the above-mentioned standards. The classification system envisions enabling stakeholders and commercial entities to (i) identify the most suitable biochar to fulfil the requirements for a particular soil and/or land-use,more » and (ii) distinguish the application of biochar for specific niches (e.g., soilless agriculture). It is based on the best current knowledge and the intention is to periodically review and update the document based on new data and knowledge that become available in the scientific literature. The main thrust of this classification system is based on the direct or indirect beneficial effects that biochar provides from its application to soil. We have classified the potential beneficial effects of biochar application to soils into five categories with their corresponding classes, where applicable: (i) carbon (C) storage value, (ii) fertiliser value, (iii) liming value, (iv) particle-size, and (v) use in soil-less agriculture. A summary of recommended test methods is provided at the end of the chapter.« less

Stream salamanders as indicators of stream quality in Maryland, USA

USGS Publications Warehouse

Southerland, M.T.; Jung, R.E.; Baxter, D.P.; Chellman, I.C.; Mercurio, G.; Volstad, J.H.

2004-01-01

Biological indicators are critical to the protection of small, headwater streams and the ecological values they provide. Maryland and other state monitoring programs have determined that fish indicators are ineffective in small streams, where stream salamanders may replace fish as top predators. Because of their life history, physiology, abundance, and ubiquity, stream salamanders are likely representative of biological integrity in these streams. The goal of this study was to determine whether stream salamanders are effective indicators of ecological conditions across biogeographic regions and gradients of human disturbance. During the summers of 2001 and 2002, we intensively surveyed for stream salamanders at 76 stream sites located west of the Maryland Coastal Plain, sites also monitored by the Maryland Biological Stream Survey (MBSS) and City of Gaithersburg. We found 1,584 stream salamanders, including all eight species known in Maryland, using two 15 ? 2 m transects and two 4 m2 quadrats that spanned both stream bank and channel. We performed removal sampling on transects to estimate salamander species detection probabilities, which ranged from 0.67-0.85. Stepwise regressions identified 15 of 52 non-salamander variables, representing water quality, physical habitat, land use, and biological conditions, which best predicted salamander metrics. Indicator development involved (1) identifying reference (non-degraded) and degraded sites (using percent forest, shading, riparian buffer width, aesthetic rating, and benthic macroinvertebrate and fish indices of biotic integrity); (2) testing 12 candidate salamander metrics (representing species richness and composition, abundance, species tolerance, and reproductive function) for their ability to distinguish reference from degraded sites; and (3) combining metrics into an index that effectively discriminated sites according to known stream conditions. Final indices for Highlands, Piedmont, and Non-Coastal Plain regions comprised four metrics: number of species, number of salamanders, number of intolerant salamanders, and number of adult salamanders, producing classification efficiencies between 87% and 90%. Partial validation of these indices was obtained when a test of the number of salamanders metric produced an 82% correct classification of 618 MBSS sites surveyed in 1995-97. This study supports the use of stream salamander monitoring and a composite stream salamander index of biotic integrity (SS-IBI) to determine stream quality in Maryland.

Proposed methods and endpoints for defining and assessing adverse environmental impact (AEI) on fish communities/populations in Tennessee River reservoirs.

PubMed

Hickman, Gary D; Brown, Mary L

2002-06-07

Two multimetric indices have been developed to help address fish community (reservoir fish assemblage index [RFAI]) and individual population quality (sport fishing index [SFI]) in Tennessee River reservoirs. The RFAI, with characteristics similar to the index of biotic integrity (IBI) used in stream fish community determinations, was developed to monitor the existing condition of resident fish communities. The index, which incorporates standardized electrofishing of littoral areas and experimental gill netting for limnetic bottom-dwelling species, has been used to determine residential fish community response to various anthropogenic impacts in southeastern reservoirs. The SFI is a multimetric index designed to address the quality of the fishery for individual resident sport fish species in a particular lake or reservoir[4]. The SFI incorporates measures of fish population aspects and angler catch and pressure estimates. This paper proposes 70% of the maximum RFAI score and 10% above the average SFI score for individual species as "screening" endpoints for balanced indigenous populations (BIP) or adverse environmental impact (AEI). Endpoints for these indices indicate: (1) communities/populations are obviously balanced indigenous populations (BIP) indicating no adverse environmental impact (AEI), or are "screened out"; (2) communities/populations are considered to be potentially impacted; and (3) where the resident fish community/population should be considered adversely impacted. Suggestions are also made concerning how examination of individual metric scores can help determine the source or cause of the impact.

MEGA: the next generation Medium Energy Gamma-ray Telescope

NASA Astrophysics Data System (ADS)

Paciesas, W.; Miller, R. S.; Andritschke, R.; Kanbach, G.; Zoglauer, A.; Bloser, P.; Hunter, S.; Cravens, J.; Cherry, M.; Guzik, T. G.; Stacy, J. G.; Wefel, J. P.; Di Cocco, G.; Hartmann, D.; Kippen, R. M.; Vestrand, W. T.; Kurfess, J.; Phlips, B.; Strickman, M.; Wulf, E.; Macri, J. R.; McConnell, M. L.; Ryan, J. M.; Reglero, V.; Zych, A. D.

2004-08-01

The MEGA mission would enable a sensitive all-sky survey of the medium-energy gamma-ray sky (0.3-50 MeV). This mission will bridge the huge sensitivity gap between the COMPTEL and OSSE experiments on the Compton Gamma Ray Observatory, the SPI and IBIS instruments on INTEGRAL and the visionary ACT mission. It will, among other things, serve to compile a much larger catalog of sources in this energy range, perform far deeper searches for supernovae, better measure the galactic continuum emission as well as identify the components of the cosmic diffuse emission. It will accomplish these goals with a stack of Si-strip detector (SSD) planes surrounded by a dense high-Z calorimeter. At lower photon energies (below ˜ 30 MeV), the design is sensitive to Compton interactions, with the SSD system serving as a scattering medium that also detects and measures the Compton recoil energy deposit. If the energy of the recoil electron is sufficiently high (> 2 MeV), the track of the recoil electron can also be defined. At higher photon energies (above ˜ 10 MeV), the design is sensitive to pair production events, with the SSD system measuring the tracks of the electron and positron. We will discuss the various types of event signatures in detail and describe the advantages of this design over previous Compton telescope designs. Effective area, sensitivity and resolving power estimates are also presented along with simulations of expected scientific results and beam calibration results from the prototype instrument.

Using Benthic Macroinvertebrate and Fish Communities as Bioindicators of the Tanshui River Basin Around the Greater Taipei Area — Multivariate Analysis of Spatial Variation Related to Levels of Water Pollution

PubMed Central

Young, Shuh-Sen; Yang, Hsi-Nan; Huang, Da-Ji; Liu, Su-Miao; Huang, Yueh-Han; Chiang, Chung-Ting; Liu, Jin-Wei

2014-01-01

After decades of strict pollution control and municipal sewage treatment, the water quality of the Tanshui River increased significantly after pollution mitigation as indicated by the River Pollution Index (RPI). The pollution level of the estuarine region decreased from severe pollution to mostly moderately impaired. The most polluted waters are presently restricted to a flow track length between 15–35 km relative to the river mouth. From July 2011 to September 2012, four surveys of fish and benthic macroinvertebrates were conducted at 45 sampling sites around the Tanshui River basin. The pollution level of all the study area indicated by the RPI could also be explained by the Family Biotic Index (FBI) and Biotic Index (BI) from the benthic macroinvertebrate community, and the Index of Biotic Integrity (IBI) of the fish community. The result of canonical correlation analysis between aquatic environmental factors and community structure indicated that the community structure was closely related to the level of water pollution. Fish species richness in the estuarine area has increased significantly in recent years. Some catadromous fish and crustaceans could cross the moderate polluted water into the upstream freshwater, and have re-colonized their populations. The benthic macroinvertebrate community relying on the benthic substrate of the estuarine region is still very poor, and the water layer was still moderately polluted. PMID:25026081

KSC-04PD-0040

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. -- A group of roseate spoonbills share their watery hunting ground with a lone white ibis near KSC. Spoonbills prefer to inhabit mangroves, ranging from the coasts of southern Florida, Louisiana and Texas, to the West Indies, Mexico, Central and South America. They feed on shrimps and fish in shallow waters. Spoonbills are one of 310 species of birds that inhabit the Merritt Island National Wildlife Refuge, which shares a boundary with KSC. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

KSC-04PD-0039

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. -- A lone white ibis shares its watery hunting ground with a group of roseate spoonbills near KSC. Spoonbills prefer to inhabit mangroves, ranging from the coasts of southern Florida, Louisiana and Texas, to the West Indies, Mexico, Central and South America. They feed on shrimps and fish in shallow waters. Spoonbills are one of 310 species of birds that inhabit the Merritt Island National Wildlife Refuge, which shares a boundary with KSC. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases

PubMed Central

Bauer-Mehren, Anna; Bundschus, Markus; Rautschka, Michael; Mayer, Miguel A.; Sanz, Ferran; Furlong, Laura I.

2011-01-01

Background Scientists have been trying to understand the molecular mechanisms of diseases to design preventive and therapeutic strategies for a long time. For some diseases, it has become evident that it is not enough to obtain a catalogue of the disease-related genes but to uncover how disruptions of molecular networks in the cell give rise to disease phenotypes. Moreover, with the unprecedented wealth of information available, even obtaining such catalogue is extremely difficult. Principal Findings We developed a comprehensive gene-disease association database by integrating associations from several sources that cover different biomedical aspects of diseases. In particular, we focus on the current knowledge of human genetic diseases including mendelian, complex and environmental diseases. To assess the concept of modularity of human diseases, we performed a systematic study of the emergent properties of human gene-disease networks by means of network topology and functional annotation analysis. The results indicate a highly shared genetic origin of human diseases and show that for most diseases, including mendelian, complex and environmental diseases, functional modules exist. Moreover, a core set of biological pathways is found to be associated with most human diseases. We obtained similar results when studying clusters of diseases, suggesting that related diseases might arise due to dysfunction of common biological processes in the cell. Conclusions For the first time, we include mendelian, complex and environmental diseases in an integrated gene-disease association database and show that the concept of modularity applies for all of them. We furthermore provide a functional analysis of disease-related modules providing important new biological insights, which might not be discovered when considering each of the gene-disease association repositories independently. Hence, we present a suitable framework for the study of how genetic and environmental factors, such as drugs, contribute to diseases. Availability The gene-disease networks used in this study and part of the analysis are available at http://ibi.imim.es/DisGeNET/DisGeNETweb.html#Download. PMID:21695124

Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases.

PubMed

Bauer-Mehren, Anna; Bundschus, Markus; Rautschka, Michael; Mayer, Miguel A; Sanz, Ferran; Furlong, Laura I

2011-01-01

Scientists have been trying to understand the molecular mechanisms of diseases to design preventive and therapeutic strategies for a long time. For some diseases, it has become evident that it is not enough to obtain a catalogue of the disease-related genes but to uncover how disruptions of molecular networks in the cell give rise to disease phenotypes. Moreover, with the unprecedented wealth of information available, even obtaining such catalogue is extremely difficult. We developed a comprehensive gene-disease association database by integrating associations from several sources that cover different biomedical aspects of diseases. In particular, we focus on the current knowledge of human genetic diseases including mendelian, complex and environmental diseases. To assess the concept of modularity of human diseases, we performed a systematic study of the emergent properties of human gene-disease networks by means of network topology and functional annotation analysis. The results indicate a highly shared genetic origin of human diseases and show that for most diseases, including mendelian, complex and environmental diseases, functional modules exist. Moreover, a core set of biological pathways is found to be associated with most human diseases. We obtained similar results when studying clusters of diseases, suggesting that related diseases might arise due to dysfunction of common biological processes in the cell. For the first time, we include mendelian, complex and environmental diseases in an integrated gene-disease association database and show that the concept of modularity applies for all of them. We furthermore provide a functional analysis of disease-related modules providing important new biological insights, which might not be discovered when considering each of the gene-disease association repositories independently. Hence, we present a suitable framework for the study of how genetic and environmental factors, such as drugs, contribute to diseases. The gene-disease networks used in this study and part of the analysis are available at http://ibi.imim.es/DisGeNET/DisGeNETweb.html#Download.

Connecting the dots: a collaborative USGS-NPS effort to expand the utility of monitoring data

USGS Publications Warehouse

Grace, James B.; Schoolmaster, Donald R.; Schweiger, E. William; Mitchell, Brian R.; Miller, Kathryn; Guntenspergen, Glenn R.

2014-01-01

The Natural Resource Challenge (National Park Service 1999) was a call to action. It constituted a mandate for monitoring based on the twin premises that (1) natural resources in national parks require active management and stewardship if we are to protect them from gradual degradation, and (2) we cannot protect what we do not understand. The intent of the challenge was embodied in its original description: We must expand existing inventory programs and develop efficient ways to monitor the vital signs of natural systems. We must enlist others in the scientific community to help, and also facilitate their inquiry. Managers must have and apply this information to preserve our natural resources. In this article, we report on ongoing collaborative work between the National Park Service (NPS) and the US Geological Survey (USGS) that seeks to add to our scientific understanding of the ecological processes operating behind vital signs monitoring data. The ultimate goal of this work is to provide insights that can facilitate an understanding of the systems and identify potential opportunities for active stewardship by NPS managers (Bennetts et al. 2007; Mitchell et al. 2014). The bulk of the work thus far has involved Acadia and Rocky Mountain national parks, but there are plans for extending the work to additional parks. Our story stats with work designed to consider ways of assessing the status and condition of natural resources and the potential for historical or ongoing influences of human activities. In the 1990s, the concept of "biotic integrity" began to take hold as an aspiration for developing quantitative indices describing how closely the conditions at a site resemble those found at pristine, unimpacted sites. Quantitative methods for developing indices of biotic integrity (IBIs) and elaborations of that idea (e.g., ecological integrity) have received considerable attention and application of these methods to natural resources has become widespread (Karr 1991; Barbour et al. 1999; Stoddard et al. 2008). Despite widespread use, many questions remain about how metrics are combined to form effective indices and about how to interpret both. Scientists and natural resource specialists within NPS and USGS have joined forces to critique the current analysis methods, with the collaboration involving the Rocky Mountain and Northeast Temperate NPS Inventory and Monitoring (I & M) networks, along with others, and USGS scientists from the National Wetlands Research Center and Patuxent Wildlife Research Center. Funding that initiated the project was from a joint-partnership fund managed by the USGS Ecosystems Program for National Park Monitoring research and the work was focused at Acadia National Park and Rocky Mountain National Park. Here we present synopses of two major issues addressed by the group.

Naturally occurring secondary nutritional hyperparathyroidism in cattle egrets (Bubulcus ibis) from central Texas.

PubMed

Phalen, David N; Drew, Mark L; Contreras, Cindy; Roset, Kimberly; Mora, Miguel

2005-04-01

Naturally occurring secondary nutritional hyperparathyroidism is described in the nestlings of two colonies of cattle egrets (Bubulcus ibis) from Central Texas (Bryan and San Antonio, Texas, USA). Nestlings from a third colony (Waco, Texas, USA) were collected in a subsequent year for comparison. Birds from the first two colonies consistently had severe osteopenia and associated curving deformities and folding fractures of their long bones. These birds also had reduced bone ash, increased osteoclasia, a marked decrease in osteoblast activity, variable lengthening and shortening of the hypertrophic zone of the epiphyseal cartilage, decreased and disorganized formation of new bone, and a marked hypertrophy and hyperplasia of the parathyroid glands as compared to birds collected from the third colony. Fibrous osteodystrophy was found in all of the birds from San Antonio and Bryan. Evidence of moderate to severe calcium deficiency was also identified in 33% of the cattle egrets collected from Waco. Gut contents of affected chicks contained predominately grasshoppers and crickets; vertebrate prey items were absent from the Bryan birds. Grasshoppers and crickets collected from fields frequented by the adult egrets in 1994 had 0.12-0.28% calcium and 0.76-0.81% phosphorus. Pooled grasshoppers and crickets collected during a subsequent wet early spring averaged 0.24% calcium and 0.65% phosphorus. Although the phosphorus content of the insect prey was adequate for growth, calcium was approximately one-third the minimum calcium requirement needed for growth for other species of birds. It was postulated that cattle egrets breeding in Central Texas have expanded their range into habitat that contains less vertebrate prey, and as a result, many nestling egrets are being fed diets that contain suboptimal calcium. Therefore, in years where vertebrate prey is scarce and forage for insect prey is reduced in calcium, nestling egrets are at risk for developing secondary nutritional hyperparathyroidism.

Naturally occurring secondary nutritional hyperparathyroidism in cattle egrets (Bubulcus ibis) from Central Texas

USGS Publications Warehouse

Phalen, D.N.; Drew, M.L.; Contreras, C.; Roset, K.; Mora, M.

2005-01-01

Naturally occurring secondary nutritional hyperparathyroidism is described in the nestlings of two colonies of cattle egrets (Bubulcus ibis) from Central Texas (Bryan and San Antonio, Texas, USA). Nestlings from a third colony (Waco, Texas, USA) were collected in a subsequent year for comparison. Birds from the first two colonies consistently had severe osteopenia and associated curving deformities and folding fractures of their long bones. These birds also had reduced bone ash, increased osteoclasia, a marked decrease in osteoblast activity, variable lengthening and shortening of the hypertrophic zone of the epiphyseal cartilage, decreased and disorganized formation of new bone, and a marked hypertrophy and hyperplasia of the parathyroid glands as compared to birds collected from the third colony. Fibrous osteodystrophy was found in all of the birds from San Antonio and Bryan. Evidence of moderate to severe calcium deficiency was also identified in 33% of the cattle egrets collected from Waco. Gut contents of affected chicks contained predominately grasshoppers and crickets; vertebrate prey items were absent from the Bryan birds. Grasshoppers and crickets collected from fields frequented by the adult egrets in 1994 had 0.12-0.28% calcium and 0.76-0.81% phosphorus. Pooled grasshoppers and crickets collected during a subsequent wet early spring averaged 0.24% calcium and 0.65% phosphorus. Although the phosphorus content of the insect prey was adequate for growth, calcium was approximately one-third the minimum calcium requirement needed for growth for other species of birds. It was postulated that cattle egrets breeding in Central Texas have expanded their range into habitat that contains less vertebrate prey, and as a result, many nestling egrets are being fed diets that contain suboptimal calcium. Therefore, in years where vertebrate prey is scarce and forage for insect prey is reduced in calcium, nestling egrets are at risk for developing secondary nutritional hyperparathyroidism. ?? Wildlife Disease Association 2005.

Food availability is expressed through physiological stress indicators in nestling white ibis: A food supplementation experiment

USGS Publications Warehouse

Herring, G.; Cook, Mark I.; Gawlik, D.E.; Call, Erynn M.

2011-01-01

Physiological responses to environmental stress such as adrenocortical hormones and cellular stress proteins have recently emerged as potentially powerful tools for investigating physiological effects of avian food limitation. However, little is known about the physiological stress responses of free-living nestling birds to environmental variation in food availability. We experimentally tested how hydrologically mediated changes in food availability affect the physiological stress responses of juvenile white ibises Eudocimus albus in a fluctuating wetland. We provided supplementary food to free-living nestlings during 2years with contrasting hydrologic and food availability conditions, and used plasma (PCORT) and faecal (FCORT) corticosterone and heat shock proteins (HSP60 and HSP70) from first-hatched (A-nestlings) and second-hatched (B-nestlings) to detect relatively short- to long-term responses to food limitation. Nestling physiological stress responses were relatively low in all treatments during the year with optimal food availability, but PCORT, FCORT and HSP60 levels increased during the poor food year. FCORT and HSP60 responses were clearly due to nutritional condition as elevated concentrations were evident primarily in control nestlings. Significant year by hatch order interactions for both FCORT and HSP60 revealed that these increases were largely incurred by B-nestlings. FCORT and HSP60 responses were also well developed early in neonatal development and remained elevated for the duration of the experiment suggesting a chronic stress response. PCORT and HSP70 were less informative stress responses. The nutritionally mediated increases in FCORT and HSP60 provide compelling evidence that white ibis nestlings can be physiologically affected by environmental food levels. FCORT and HSP60 are effective indicators of nutritional mediated stress for nestling white ibises and potentially for other species prone to capture or handling stress. ?? 2010 The Authors. Functional Ecology ?? 2010 British Ecological Society.

The 2012 Transit of Venus for Cytherean Atmospheric Studies and as an Exoplanet Analog

NASA Astrophysics Data System (ADS)

Pasachoff, Jay M.; Schneider, G.; Babcock, B. A.; Lu, M.; Reardon, K. P.; Widemann, T.; Tanga, P.; Dantowitz, R.; Willson, R.; Kopp, G.; Yurchyshyn, V.; Sterling, A.; Scherrer, P.; Schou, J.; Golub, L.; Reeves, K.

2012-10-01

We worked to assemble as complete a dataset as possible for the Cytherean atmosphere in collaboration with Venus Express in situ and to provide an analog of spectral and total irradiance exoplanet measurements. From Haleakala, the whole transit was visible in coronal skies; our B images showed the evolution of the visibility of Venus's atmosphere and of the black-drop effect, as part of the Venus Twilight Experiment's 9 coronagraphs distributed worldwide with BVRI. We imaged the Cytherean atmosphere over two minutes before first contact, with subarcsecond resolution, with the coronagraph and a separate refractor. The IBIS imaging spectrometer at Sacramento Peak Observatory at H-alpha and carbon-dioxide also provided us high-resolution imaging. The NST of Big Bear Solar Observatory also provided high-resolution vacuum observations of the Cytherean atmosphere and black drop evolution. Our liaison with UH's Mees Solar Observatory scientists provided magneto-optical imaging at calcium and potassium. Spaceborne observations included the Solar Dynamics Observatory's AIA and HMI, and the Solar Optical Telescope (SOT) and X-ray Telescope (XRT) on Hinode, and total-solar-irradiance measurements with ACRIMSAT and SORCE/TIM, to characterize the event as an exoplanet-transit analog. Our expedition was sponsored by the Committee for Research and Exploration/National Geographic Society. Some of the funds for the carbon-dioxide filter for IBIS were provided by NASA through AAS's Small Research Grant Program. We thank Rob Lucas, Aram Friedman, and Eric Pilger '82 for assistance with Haleakala observing, Rob Ratkowski of Haleakala Amateur Astronomers for assistance with equipment and with the site, Stan Truitt for the loan of his Paramount ME, and Steve Bisque/Software Bisque for TheSky X controller. We thank Joseph Gangestad '06 of Aerospace Corp., a veteran of our 2004 expedition, for assistance at Big Bear. We thank the Lockheed Martin Solar and Astrophysics Laboratory and Hinode science and operations teams for planning and support.

History and tradition, or contemporary ornithology? Why ornithological journals should not have bird names

USGS Publications Warehouse

Remsen, J.V.; Kushlan, J.A.; Loiselle, B.A.

1998-01-01

Ask any non-ornithologist to predict the prestige of the following journals, based on the name alone: American Birds, Auk, Bluebird, Condor, Emu, Forktail, Gerfaut, Ibis, Journal of Avian Biology, and Journal of Field Ornithology. The results always will be that the first one and the last two are placed in one category, and the blizzard of bird-named journals in another, lower category. When that same non-ornithologist is called upon to evaluate the publication records of ornithologists, those with important papers in bird-named journals likely will suffer lower rankings. If lucky, an ornithologist under review will receive support from an internationally distinguished ornithological colleague who will take explicit pains to argue that publication in The Auk is a meritorious professional accomplishment. Such arguments, however, may not counteract the damage of a single referee's sneering at the names of the journals in which a bird biologist has chosen to publish. One cannot overstate the importance of the serendipitous collection of peer reviews that determines whether ornithologists get and then keep their first academic jobs, receive tenure, are promoted, are evaluated fairly, and, most important, achieve and maintain the respect of colleagues in other biological disciplines.

Assessment of Effectiveness and Limitations of Habitat Suitability Models for Wetland Restoration

USGS Publications Warehouse

Draugelis-Dale, Rassa O.

2008-01-01

Habitat suitability index (HSI) models developed for wildlife in the Louisiana Coastal Area Comprehensive Ecosystem Restoration Plan (LCA study) have been assessed for parameter and overall model quality. The success of the suitability models from the South Florida Water Management District for The Everglades restoration project and from the Spatially Explicit Species Index Models (SESI) of the Across Trophic Level System Simulation (ATLSS) Program of Florida warranted investigation with possible application of modeling theory to the current LCA study. General HSI models developed by the U.S. Fish and Wildlife Service were also investigated. This report presents examinations of theoretical formulae and comparisons of the models, performed by using diverse hypothetical settings of hydrological/biological ecosystems to highlight weaknesses as well as strengths among the models, limited to the American alligator and selected wading bird species (great blue heron, great egret, and white ibis). Recommendations were made for the LCA study based on these assessments. An enhanced HSI model for the LCA study is proposed for the American alligator, and a new HSI model for wading birds is introduced for the LCA study. Performance comparisons of the proposed models with the other suitability models are made by using the aforementioned hypothetical settings.

KSC-07pd0728

NASA Image and Video Library

2007-03-29

KENNEDY SPACE CENTER, FLA. -- A glossy ibis is waiting for prey to swim by in this pond near Kennedy Space Center. This species inhabits marshes, swamps, flooded fields, coastal bays and estuaries, ranging along the coast from Maine to Florida and Texas. Along the coast it feeds mostly on fiddler crabs, but also may eat insects and snakes, including the poisonous water moccasin. KSC shares a boundary with the Merritt Island National Wildlife Refuge, which surrounds it. The refuge is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. In addition, the refuge supports 19 endangered or threatened wildlife species on Federal or State lists, more than any other single refuge in the U.S. Photo credit: NASA/Ken Thornsley

Exploring eco-hydrological consequences of the Amazonian ecosystems under climate and land-use changes in the 21st century

NASA Astrophysics Data System (ADS)

Zhang, K.; Castanho, A. D.; Moghim, S.; Bras, R. L.; Coe, M. T.; Costa, M. H.; Levine, N. M.; Longo, M.; McKnight, S.; Wang, J.; Moorcroft, P. R.

2012-12-01

Deforestation and drought have imposed regional-scale perturbations onto Amazonian ecosystems and are predicted to cause larger negative impacts on the Amazonian ecosystems and associated regional carbon dynamics in the 21st century. However, global climate models (GCMs) vary greatly in their projections of future climate change in Amazonia, giving rise to uncertainty in the expected fate of the Amazon over the coming century. In this study, we explore the possible eco-hydrological consequences of the Amazonian ecosystems under projected climate and land-use changes in the 21st century using two state-of-the-art terrestrial ecosystem models—Ecosystem Demography Model 2.1(ED2.1) and Integrated Biosphere Simulator model (IBIS)—driven by three representative, bias-corrected climate projections from three IPCC GCMs (NCARPCM1, NCARCCSM3 and HadCM3), coupled with two land-use change scenarios (a business-as-usual and a strict governance scenario). We also analyze the relative roles of climate change, CO2 fertilization, land-use change and fire in driving the projected composition and structure of the Amazonian ecosystems. Our results show that CO2 fertilization enhances vegetation productivity and above-ground biomass (AGB) in the region, while land-use change and fire cause AGB loss and the replacement of forests by the savanna-like vegetation. The impacts of climate change depend strongly on the direction and severity of projected precipitation changes in the region. In particular, when intensified water stress is superimposed on unregulated deforestation, both ecosystem models predict large-scale dieback of Amazonian rainforests.

MEGA: the next generation Medium Energy Gamma-ray Telescope

NASA Astrophysics Data System (ADS)

Ryan, James M.; Andritschke, Robert; Bloser, Peter F.; Cravens, James P.; Cherry, Michael L.; Di Cocco, Guido; Guzik, T. G.; Hartmann, Dieter H.; Hunter, Stanley H.; Kanbach, Gottfried; Kippen, R. M.; Kurfess, James; Macri, John R.; McConnell, Mark L.; Miller, Richard S.; Paciesas, William S.; Phlips, Bernard; Reglero, Victor; Stacy, J. G.; Strickman, Mark; Vestrand, W. Thomas; Wefel, John P.; Wulf, Eric; Zoglauer, Andreas; Zych, Allen D.

2004-10-01

The MEGA mission would enable a sensitive all-sky survey of the medium-energy ?-ray sky (0.3-50 MeV). This mission will bridge the huge sensitivity gap between the COMPTEL and OSSE experiments on the Compton Gamma Ray Observatory, the SPI and IBIS instruments on INTEGRAL and the visionary ACT mission. It will, among other things, serve to compile a much larger catalog of sources in this energy range, perform far deeper searches for supernovae, better measure the galactic continuum emission as well as identify the components of the cosmic diffuse emission. The large field of view will allow MEGA to continuously monitor the sky for transient and variable sources. It will accomplish these goals with a stack of Si-strip detector (SSD) planes surrounded by a dense high-Z calorimeter. At lower photon energies (below ~30 MeV), the design is sensitive to Compton interactions, with the SSD system serving as a scattering medium that also detects and measures the Compton recoil energy deposit. If the energy of the recoil electron is sufficiently high (> 2 MeV), the track of the recoil electron can also be defined. At higher photon energies (above ~10 MeV), the design is sensitive to pair production events, with the SSD system measuring the tracks of the electron and positron. We will discuss the various types of event signatures in detail and describe the advantages of this design over previous Compton telescope designs. Effective area, sensitivity and resolving power estimates are also presented along with simulations of expected scientific results and beam calibration results from the prototype instrument.

Fish-community composition in Otselic River, in the vicinity of Whitney Point Lake, Broome and Cortland counties, New York, 2000

USGS Publications Warehouse

Brightbill, R.A.; Bilger, Michael D.

2001-01-01

The U.S. Army Corps of Engineers, Baltimore District, has been conducting biological surveys of the inflow and outflow streams of Whitney Point Lake since the early 1980's. These surveys are made to identify possible detrimental effects as well as benefits of the reservoir and to better understand the aquatic communities in the vicinity of the lake at the present and over time. The U.S. Army Corps of Engineers and the U.S. Geological Survey jointly conducted a survey of the fish communities upstream and downstream of the reservoir in Otselic River in September 2000. The fish communities upstream and downstream were compared and any differences or similarities seen in the communities were noted.This study found the fish communities upstream and downstream of Whitney Point Lake to be in good condition, with Index of Biotic Integrity (IBI) scores 4.3 upstream and 4.5 downstream. The habitat conditions of both reaches were of suboptimal quality, with a score of 15 for both reaches as determined by use of the U.S. Environmental Protection Agency's Rapid Bioassessment Protocols, yet are capable of supporting fish communities. The Shannon Index was 3.83 upstream and 3.16 downstream of the lake, indicating that both reaches are slightly impacted by species richness and lack of individual evenness among the species. The communities also were different from each other. Only 11 of the 21 species upstream were also captured downstream. The Jaccards Coefficient and the Index of Similarity reflect this community difference with scores of 0.39 and 0.56, respectively.

Obituary: Paul Barr, 1955-2005

NASA Astrophysics Data System (ADS)

Parmar, Arvind

2007-12-01

Paul Barr, an extragalactic astronomer and spacecraft mission planner, died on 19 October 2005 at his home in Noordwijk, the Netherlands, at the age of 50. Although his scientific interests ranged from AGN to X-ray binaries, he will perhaps best be remembered for his mission planning skills on EXOSAT, ISO, and Integral. Many hundreds of observers have benefited from his ability to juggle seemingly impossible observing constraints and arrive at the optimum observing program. A rare talent. Barr was born in Sunderland, England, on 28 July 1995. After attending Saint Aidans Grammar School, where his father was the headmaster, he obtained his Bachelors Degree in astronomy from the University of London (June 1976) before moving to the Mullard Space Science Laboratory. There he obtained his Doctorate in X-ray astronomy in February 1980, using data from the Ariel V and Copernicus satellites. After a Post-Doctoral position at London University, where he did research into ultra-violet emission from AGN and X-ray binaries using IUE, Paul joined ESA in 1983. He worked on a wide range of missions including EXOSAT, ISO, and Integral. These observatories spanned the wavelength range from the Infra-red to the gamma-ray, giving insight into Paul's flexibility and ability to contribute in many areas. On ISO, Paul oversaw the scientific development and use of the very successful observation scheduling system — this topic became his specialty. As ISO operations became routine, he took up the challenge of space-borne gamma-ray astronomy and moved in 1997 to Integral where he worked in the Science Operation Centre (ISOC), at ESTEC in the Netherlands, as senior mission planner. He worked with the gamma-ray imager (IBIS) instrument team to ensure that operations of their instrument were properly supported by ESA and supported preparations of announcements of opportunity. In early 2005 the ISOC moved to Europe's Space Astronomy Centre (ESAC) just outside Madrid, Spain. Paul, however, decided to stay put physically, but move on scientifically, and transferred to the Ulysses mission where he joined the software development team. We miss a uniquely flexible scientist in these days of increasing specialization and a colleague with an infectious enthusiasm for all things to do with Sunderland, especially the football club.

Biological assessment of streams in the Indianapolis Metropolitan Area, Indiana, 1999-2001

USGS Publications Warehouse

Voelker, David C.

2004-01-01

During 1999?2001, benthic invertebrates and fish were sampled to describe biological communities in the White River and selected tributaries in the Indianapolis Metropolitan Area in Indiana. Twelve sites (six on the White River and six on tributaries) were sampled biannually for benthic invertebrates and annually for fish. The information complements water-chemistry data collected by the Indianapolis Department of Public Works in the study area. Evaluation of the habitat for sites in the study area was done, using a Qualitative Habitat Evaluation Index (QHEI) developed by the Ohio Environmental Protection Agency. The QHEI scores basin and habitat characteristics for each site, with a maximum possible score of 100. Higher scores indicate better habitat conditions for biotic communities. The QHEI scores for sites on the White River ranged from 55 at the Harding site to 71 at the Waverly site; scores on the tributaries ranged from 45 on Pogues Run to 82 on Williams Creek. A total of 151 taxa were identified from the benthic-invertebrate samples. The Ephemeroptera, Plecoptera, and Trichoptera (EPT) Index scores for sites on the White River ranged from 0 at the Harding site to 15 at the Nora site. The Nora site, which is upstream from Indianapolis, generally scored the highest of all White River sites. Sites in the immediate vicinity of Indianapolis scored the lowest and indicate a negative effect on benthic-invertebrate communities in that reach. EPT Index scores increased in the farthest downstream reaches, which indicate that water-quality conditions had improved in comparison to sites in Indianapolis. For the tributary sites, EPT Index values ranged from 0 at Pogues Run to 16 at Buck Creek. Tributary sites on Fall Creek, Pleasant Run, and Pogues Run consistently scored 7 or lower; sites on Buck Creek, Eagle Creek, and Williams Creek scored 7 or higher. Hilsenhoff Biotic Index (HBI) scores ranged from 4.9 (good) to 9.6 (very poor) for the White River sites and from 5.2 (good) to 8.0 (poor) for the tributary sites. The lowest scores among the White River sites were at the Nora site, indicating the best water-quality conditions were where the White River enters Marion County. The highest HBI scores were at the Morris and Harding sites, indicating the least-favorable water-quality conditions of all the White River sites. Of the tributary sites, HBI scores for Buck, Eagle, and Williams Creeks indicate fair water-quality conditions; HBI scores for Pleasant Run and Pogues Run were the highest, indicating relatively poor water-quality conditions. On the White River, the highest Invertebrate Community Index (ICI) scores, which indicate the best benthic-invertebrate conditions, were at the Nora site. Conditions were fair to poor in the downtown Indianapolis area; ICI scores indicate slight improvement in the downstream reaches of the study area. Of the tributary sites, Buck Creek was the only site with ICI scores indicating exceptional water quality. Williams Creek ICI scores indicate good water quality; the remaining tributary-site scores reflect fair conditions. A total of 74 species and 3 hybrids of fish were identified during the study period. The Cyprinidae (carps and minnows) was the largest group of fish identified and consisted of more than half of all fish collected. The most numerous species was the central stoneroller (Campostoma anomalum), which accounted for almost 25 percent of the fish identified. Two nonnative species, the koi carp (Cyprinus carpio) and the western mosquitofish (Gambusia affinis), and one species classified as an Indiana species of special concern, the northern studfish (Fundulus catenatus), also were collected during the study. Indiana Index of Biotic Integrity (IBI) and Ohio Index of Biotic Integrity scores were calculated to show the condition of the fish communities at each site. Results of the Indiana IBI calculations showed no apparent differences in scores among the Wh

Three 2012 Transits of Venus: From Earth, Jupiter, and Saturn

NASA Astrophysics Data System (ADS)

Pasachoff, Jay M.; Schneider, G.; Babcock, B. A.; Lu, M.; Edelman, E.; Reardon, K.; Widemann, T.; Tanga, P.; Dantowitz, R.; Silverstone, M. D.; Ehrenreich, D.; Vidal-Madjar, A.; Nicholson, P. D.; Willson, R. C.; Kopp, G. A.; Yurchyshyn, V. B.; Sterling, A. C.; Scherrer, P. H.; Schou, J.; Golub, L.; McCauley, P.; Reeves, K.

2013-01-01

We observed the 2012 June 6/5 transit seen from Earth (E/ToV), simultaneously with Venus Express and several other spacecraft not only to study the Cytherean atmosphere but also to provide an exoplanet-transit analog. From Haleakala, the whole transit was visible in coronal skies; among our instruments was one of the world-wide Venus Twilight Experiment's nine coronagraphs. Venus's atmosphere became visible before first contact. SacPeak/IBIS provided high-resolution images at Hα/carbon-dioxide. Big Bear's NST also provided high-resolution observations of the Cytherean atmosphere and black-drop evolution. Our liaison with UH's Mees Solar Observatory scientists provided magneto-optical imaging at calcium and potassium. Solar Dynamics Observatory's AIA and HMI, and the Solar Optical Telescope (SOT) and X-ray Telescope (XRT) on Hinode, and total-solar-irradiance measurements with ACRIMSAT and SORCE/TIM, were used to observe the event as an exoplanet-transit analog. On September 20, we imaged Jupiter for 14 Hubble Space Telescope orbits, centered on a 10-hour ToV visible from Jupiter (J/ToV), as an exoplanet-transit analog in our own solar system, using Jupiter as an integrating sphere. Imaging was good, although much work remains to determine if we can detect the expected 0.01% solar irradiance decrease at Jupiter and the even slighter differential effect between our violet and near-infrared filters caused by Venus's atmosphere. We also give a first report on our currently planned December 21 Cassini UVIS observations of a transit of Venus from Saturn (S/ToV). Our E/ToV expedition was sponsored by the Committee for Research and Exploration/National Geographic Society; supplemented: NASA/AAS's Small Research Grant Program. We thank Rob Ratkowski, Stan Truitt, Rob Lucas, Aram Friedman, and Eric Pilger '82 at Haleakala, and Joseph Gangestad '06 at Big Bear for assistance, and Lockheed Martin Solar and Astrophysics Lab and Hinode science and operations teams for support for coordinated observations with NASA satellites. Our J/ToV observations were based on observations made with HST, operated by AURA, Inc., under NASA contract NAS 5-26555; these observations are associated with program #13067.

KSC-04PD-0891

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. Roseate spoonbills and white ibis ((long, curved bill) gather in a lake north of Kennedy Space Center. Spoonbills are so named because of the broad spatulate tip on its long straight bill. They obtain food by sweeping their bills from side to side and scooping up whatever they encounter. The Center shares a boundary north, south and west with the 92,000-acre Merritt Island National Wildlife Refuge, which is a habitat for more than 310 species of birds, 25 mammals, 117 fishes and 65 amphibians and reptiles. The marshes and open water of the refuge also provide wintering areas for 23 species of migratory waterfowl, as well as a year-round home for great blue herons, great egrets, wood storks, cormorants, brown pelicans and other species of marsh and shore birds.

Long-term optical and X-ray variability of the Be/X-ray binary H 1145-619: Discovery of an ongoing retrograde density wave

NASA Astrophysics Data System (ADS)

Alfonso-Garzón, J.; Fabregat, J.; Reig, P.; Kajava, J. J. E.; Sánchez-Fernández, C.; Townsend, L. J.; Mas-Hesse, J. M.; Crawford, S. M.; Kretschmar, P.; Coe, M. J.

2017-11-01

Context. Multiwavelength monitoring of Be/X-ray binaries is crucial to understand the mechanisms producing their outbursts. H 1145-619 is one of these systems, which has recently displayed X-ray activity. Aims: We investigate the correlation between the optical emission and X-ray activity to predict the occurrence of new X-ray outbursts from the inferred state of the circumstellar disc. Methods: We have performed a multiwavelength study of H 1145-619 from 1973 to 2017 and present here a global analysis of its variability over the last 40 yr. We used optical spectra from the SAAO, SMARTS, and SALT telescopes and optical photometry from the Optical Monitoring Camera (OMC) onboard INTEGRAL and from the All Sky Automated Survey (ASAS). We also used X-ray observations from INTEGRAL/JEM-X, and IBIS to generate the light curves and combined them with Swift/XRT to extract the X-ray spectra. In addition, we compiled archival observations and measurements from the literature to complement these data. Results: Comparing the evolution of the optical continuum emission with the Hα line variability, we identified three different patterns of optical variability: first, global increases and decreases of the optical brightness, observed from 1982 to 1994 and from 2009 to 2017, which can be explained by the dissipation and replenishment of the circumstellar disc; second, superorbital variations with a period of Psuperorb ≈ 590 days, observed in 2002-2009, which seems to be related to the circumstellar disc; and third, optical outbursts, observed in 1998-1999 and 2002-2005, which we interpret as mass ejections from the Be star. We discovered the presence of a retrograde one-armed density wave, which appeared in 2016 and is still present in the circumstellar disc. Conclusions: We carried out the most complete long-term optical study of the Be/X-ray binary H 1145-619 in correlation with its X-ray activity. For the first time, we found the presence of a retrograde density perturbation in the circumstellar disc of a Be/X-ray binary.

Effects of future climate change, CO2 enrichment, and vegetation structure variation on hydrological processes in China

USGS Publications Warehouse

Zhu, Qiuan; Jiang, Hong; Peng, Changhui; Liu, Jinxun; Fang, Xiuqin; Wei, Xiaohua; Liu, Shirong; Zhou, Guomo

2012-01-01

Investigating the relationship between factors (climate change, atmospheric CO2 concentrations enrichment, and vegetation structure) and hydrological processes is important for understanding and predicting the interaction between the hydrosphere and biosphere. The Integrated Biosphere Simulator (IBIS) was used to evaluate the effects of climate change, rising CO2, and vegetation structure on hydrological processes in China at the end of the 21st century. Seven simulations were implemented using the assemblage of the IPCC climate and CO2 concentration scenarios, SRES A2 and SRES B1. Analysis results suggest that (1) climate change will have increasing effects on runoff, evapotranspiration (ET), transpiration (T), and transpiration ratio (transpiration/evapotranspiration, T/E) in most hydrological regions of China except in the southernmost regions; (2) elevated CO2 concentrations will have increasing effects on runoff at the national scale, but at the hydrological region scale, the physiology effects induced by elevated CO2 concentration will depend on the vegetation types, climate conditions, and geographical background information with noticeable decreasing effects shown in the arid Inland region of China; (3) leaf area index (LAI) compensation effect and stomatal closure effect are the dominant factors on runoff in the arid Inland region and southern moist hydrological regions, respectively; (4) the magnitudes of climate change (especially the changing precipitation pattern) effects on the water cycle are much larger than those of the elevated CO2 concentration effects; however, increasing CO2 concentration will be one of the most important modifiers to the water cycle; (5) the water resource condition will be improved in northern China but depressed in southernmost China under the IPCC climate change scenarios, SRES A2 and SRES B1.

An analysis of the global spatial variability of column-averaged CO2 from SCIAMACHY and its implications for CO2 sources and sinks

USGS Publications Warehouse

Zhang, Zhen; Jiang, Hong; Liu, Jinxun; Zhang, Xiuying; Huang, Chunlin; Lu, Xuehe; Jin, Jiaxin; Zhou, Guomo

2014-01-01

Satellite observations of carbon dioxide (CO2) are important because of their potential for improving the scientific understanding of global carbon cycle processes and budgets. We present an analysis of the column-averaged dry air mole fractions of CO2 (denoted XCO2) of the Scanning Imaging Absorption Spectrometer for Atmospheric Cartography (SCIAMACHY) retrievals, which were derived from a satellite instrument with relatively long-term records (2003–2009) and with measurements sensitive to the near surface. The spatial-temporal distributions of remotely sensed XCO2 have significant spatial heterogeneity with about 6–8% variations (367–397 ppm) during 2003–2009, challenging the traditional view that the spatial heterogeneity of atmospheric CO2 is not significant enough (2 and surface CO2 were found for major ecosystems, with the exception of tropical forest. In addition, when compared with a simulated terrestrial carbon uptake from the Integrated Biosphere Simulator (IBIS) and the Emissions Database for Global Atmospheric Research (EDGAR) carbon emission inventory, the latitudinal gradient of XCO2 seasonal amplitude was influenced by the combined effect of terrestrial carbon uptake, carbon emission, and atmospheric transport, suggesting no direct implications for terrestrial carbon sinks. From the investigation of the growth rate of XCO2 we found that the increase of CO2 concentration was dominated by temperature in the northern hemisphere (20–90°N) and by precipitation in the southern hemisphere (20–90°S), with the major contribution to global average occurring in the northern hemisphere. These findings indicated that the satellite measurements of atmospheric CO2 improve not only the estimations of atmospheric inversion, but also the understanding of the terrestrial ecosystem carbon dynamics and its feedback to atmospheric CO2.

Fish-community composition in Canacadea Creek, in the vicinity of Almond Lake, Allegany and Steuben counties, New York, 2000

USGS Publications Warehouse

Brightbill, R.A.; Bilger, Michael D.

2001-01-01

The U.S. Army Corps of Engineers, Baltimore District, has been conducting biological surveys of the inflow and outflow streams of Almond Lake since the early 1980's. These surveys are made to identify possible detrimental effects as well as benefits of the reservoir and to better understand the aquatic communities in the vicinity of the lake at the present and over time. The U.S. Army Corps of Engineers and the U.S. Geological Survey jointly conducted a survey of the fish communities upstream and downstream of the lake in Canacadea Creek in September 2000. The fish communities upstream and downstream were compared and any differences or similarities seen in the communities were noted.This study found the fish communities to be in fair condition upstream and good condition downstream of Almond Lake, with Index of Biotic Integrity (IBI) scores of 3.5 and 5.0, respectively. The habitat conditions of both reaches were of suboptimal quality, with a score of 14 upstream and 15 downstream as determined by use of the U.S. Environmental Protection Agency's (USEPA) Rapid Bioassessment Protocols, and are capable of supporting fish communities. The Shannon Index indicates species richness and evenness and was 1.87 upstream and 3.22 downstream of the lake, indicating the upstream reach is severely impacted and the downstream reach appears to be not impacted. The Jaccards Coefficient and the Index of Similarity statistically show these communities are similar with scores of 0.55 and 0.71, respectively. Of the 12 species captured upstream, 11 of those also were captured downstream along with 8 other species for a total of 19 species downstream.

[Teaching design and practice of human blood type traits in genetics comprehensive laboratory course].

PubMed

Zhao, Jian; Hu, Dong-mei; Yu, Da-de; Dong, Ming-liang; Li, Yun; Fan, Ying-ming; Wang, Yan-wei; Zhang, Jin-feng

2016-05-01

Comprehensive laboratory courses, which enable students to aptly apply theoretic knowledge and master experiment skills, play an important role in the present educational reform of laboratory courses. We utilized human ABO blood type as the experimental subject, and designed the experiment--"Molecular Genotyping of Human ABO Blood Type and Analysis of Population Genetic Equilibrium". In the experiment, DNA in mucosal cells is extracted from students' saliva, and each student's genotype is identified using a series of molecular genetics technologies, including PCR amplification of target fragments, enzymatic digestion, and electrophoretic separation. Then, taking the whole class as an analogous Mendel population, a survey of genotype frequency of ABO blood type is conducted, followed with analyses of various population genetic parameters using Popgene. Through the open laboratory course, students can not only master molecular genetic experimental skills, but also improve their understanding of theoretic knowledge through independent design and optimization of molecular techniques. After five years of research and practice, a stable experimental system of molecular genetics has been established to identify six genotypes of ABO blood types, namely I(A)I(A), I(A)i, I(B)I(B), I(B)i, I(A)I(B) and ii. Laboratory courses of molecular and population genetics have been integrated by calculating the frequencies of the six genotypes and three multiple alleles and testing population genetic equilibrium. The goal of the open laboratory course with independent design and implementation by the students has been achieved. This laboratory course has proved effective and received good reviews from the students. It could be applied as a genetics laboratory course for the biology majors directly, and its ideas and methods could be promoted and applied to other biological laboratory courses.

Chromospheric umbral dynamics

NASA Astrophysics Data System (ADS)

Reardon, Kevin P.; Vecchio, Antonio; Cauzzi, Gianna; Tritschler, Alexandra

2014-06-01

The chromosphere above sunspots is seen to undergo dynamical driving from perturbations from lower layers of the atmosphere. Umbral flashes have long been understood to be the result of acoustic shocks due to the drop in density in the sunspot chromosphere. Detailed observations of the umbral waves and flashes may help reveal the nature of the sunspot structure in the upper atmosphere. We report on high-resolution observations of umbral dynamics observed in the Ca II 8542 line by IBIS at the Dunn Solar Telescope. We use a principal component decomposition technique (POD) to isolate different components of the observed oscillations. We are able to explore temporal and spatial evolution of the umbral flashes. We find significant variation in the nature of the flashes over the sunspot, indicating that the chromospheric magnetic topology can strongly modify the nature of the umbral intensity and velocity oscillations.

The influence of oceanic basins on drought and ecosystem dynamics in Northeast Brazil

NASA Astrophysics Data System (ADS)

Santos Pereira, Marcos Paulo; Justino, Flavio; Mendes Malhado, Ana Claudia; Barbosa, Humberto; Marengo, José

2014-12-01

The 2012 drought in Northeast Brazil was the harshest in decades, with potentially significant impacts on the vegetation of the unique semi-arid caatinga biome and on local livelihoods. Here, we use a coupled climate-vegetation model (CCM3-IBIS) to: (1) investigate the role of the Pacific and Atlantic oceans in the 2012 drought, and; (2) evaluate the response of the caatinga vegetation to the 2012 climate extreme. Our results indicate that anomalous sea surface temperatures (SSTs) in the Atlantic Ocean were the primary factor forcing the 2012 drought, with Pacific Ocean SST having a larger role in sustaining typical climatic conditions in the region. The drought strongly influenced net primary production in the caatinga, causing a reduction in annual net ecosystem exchange indicating a reduction in amount of CO2 released to the atmosphere.

[Built-up land change and its impact on ecological quality in a fast-growing economic zone: Jinjiang County, Fujian Province, China].

PubMed

Shi, Ting Ting; Xu, Han Qiu; Tang, Fei

2017-04-18

Since China's reform and opening-up, the rapid growth of China's economy has greatly accelerated the expansion of built-up land, which has affected regional ecological environment to a great extent. Taking Jinjiang County of Fujian Province, one of the fastest economic-developing counties in the coastal areas of southeastern China, as a case study area, this paper focused on analyzing the rapid built-up land expansion process of the county and its impact on county's ecological quality using remote sensing techniques. Based on two Landsat images of 1996 and 2015 of Jinjiang, the built-up land of the county was extracted using the index-based built-up index (IBI) and its change was analyzed. In the meantime, the ecological status of Jinjiang was evaluated with a recently-proposed remote sensing based ecological index (RSEI) and the relationship between the built-up land dynamics and the ecological status changes of the county was quantitatively examined. The results showed that during the period from 1996 to 2015, the area of built-up land of Jinjiang had a net increase of 68.54 km 2 , a growth of 45%, and the expansion intensity was 0.55. The expansion of the built-up lands has caused overall degradation of the county's ecological quality. The mean value of RSEI of the county had declined from 0.532 in 1996 to 0.460 in 2015, a drop of13.5%. The area proportion of high ecological-quality grades also significantly fell from 39% in 1996 to 21% in 2015. The built-up land expansion intensity was negatively correlated with the ecological quality change.

Determination of High-affinity Antibody-antigen Binding Kinetics Using Four Biosensor Platforms.

PubMed

Yang, Danlin; Singh, Ajit; Wu, Helen; Kroe-Barrett, Rachel

2017-04-17

Label-free optical biosensors are powerful tools in drug discovery for the characterization of biomolecular interactions. In this study, we describe the use of four routinely used biosensor platforms in our laboratory to evaluate the binding affinity and kinetics of ten high-affinity monoclonal antibodies (mAbs) against human proprotein convertase subtilisin kexin type 9 (PCSK9). While both Biacore T100 and ProteOn XPR36 are derived from the well-established Surface Plasmon Resonance (SPR) technology, the former has four flow cells connected by serial flow configuration, whereas the latter presents 36 reaction spots in parallel through an improvised 6 x 6 crisscross microfluidic channel configuration. The IBIS MX96 also operates based on the SPR sensor technology, with an additional imaging feature that provides detection in spatial orientation. This detection technique coupled with the Continuous Flow Microspotter (CFM) expands the throughput significantly by enabling multiplex array printing and detection of 96 reaction sports simultaneously. In contrast, the Octet RED384 is based on the BioLayer Interferometry (BLI) optical principle, with fiber-optic probes acting as the biosensor to detect interference pattern changes upon binding interactions at the tip surface. Unlike the SPR-based platforms, the BLI system does not rely on continuous flow fluidics; instead, the sensor tips collect readings while they are immersed in analyte solutions of a 384-well microplate during orbital agitation. Each of these biosensor platforms has its own advantages and disadvantages. To provide a direct comparison of these instruments' ability to provide quality kinetic data, the described protocols illustrate experiments that use the same assay format and the same high-quality reagents to characterize antibody-antigen kinetics that fit the simple 1:1 molecular interaction model.

Sequence harmony: detecting functional specificity from alignments

PubMed Central

Feenstra, K. Anton; Pirovano, Walter; Krab, Klaas; Heringa, Jaap

2007-01-01

Multiple sequence alignments are often used for the identification of key specificity-determining residues within protein families. We present a web server implementation of the Sequence Harmony (SH) method previously introduced. SH accurately detects subfamily specific positions from a multiple alignment by scoring compositional differences between subfamilies, without imposing conservation. The SH web server allows a quick selection of subtype specific sites from a multiple alignment given a subfamily grouping. In addition, it allows the predicted sites to be directly mapped onto a protein structure and displayed. We demonstrate the use of the SH server using the family of plant mitochondrial alternative oxidases (AOX). In addition, we illustrate the usefulness of combining sequence and structural information by showing that the predicted sites are clustered into a few distinct regions in an AOX homology model. The SH web server can be accessed at www.ibi.vu.nl/programs/seqharmwww. PMID:17584793

A system for verifying models and classification maps by extraction of information from a variety of data sources

NASA Technical Reports Server (NTRS)

Norikane, L.; Freeman, A.; Way, J.; Okonek, S.; Casey, R.

1992-01-01

Recent updates to a geographical information system (GIS) called VICAR (Video Image Communication and Retrieval)/IBIS are described. The system is designed to handle data from many different formats (vector, raster, tabular) and many different sources (models, radar images, ground truth surveys, optical images). All the data are referenced to a single georeference plane, and average or typical values for parameters defined within a polygonal region are stored in a tabular file, called an info file. The info file format allows tracking of data in time, maintenance of links between component data sets and the georeference image, conversion of pixel values to `actual' values (e.g., radar cross-section, luminance, temperature), graph plotting, data manipulation, generation of training vectors for classification algorithms, and comparison between actual measurements and model predictions (with ground truth data as input).

Mercury bioaccumulation in organisms from three Puerto Rican estuaries.

PubMed

Burger, J; Cooper, K; Saliva, J; Gochfeld, D; Lipsky, D; Gochfeld, M

1992-09-01

We analyzed mercury levels in shrimp (Palaemonetes sp.), Blue Crabs (Callinectes sp.), fish (Tarpon Megalops atlantica and Tilapia Tilapia mossambica), lizards (Ameiva exsul), Cattle Egret (Bubulcus ibis) and Moorhen (Gallinula chloropus) in three estuaries in Puerto Rico in 1988. There were no quantifiable concentrations greater than the method detection limit of mercury in shrimp, crabs and lizards from any site. Mercury levels were also below detection limits in Tilapia, except for specimens collected at Frontera Creek, allegedly contaminated with mercury. However, mercury levels ranged from 92-238 μg/kg (wet weight) in Tarpon, a predaceous fish that feeds on smaller fish. Few of the birds had detectable levels of mercury. Our results indicate relatively low concentrations of mercury in biota collected in all of the three estuaries at most trophic levels, although 10 of 12 Tarpon fillet samples from Frontera had detectable mercury compared to 3 of 12 fillet samples for the other two lagoons.