Science.gov

Sample records for interactions symbiosis predator-prey

  1. Role reversal in a predator-prey interaction.

    PubMed

    Sánchez-Garduño, Faustino; Miramontes, Pedro; Marquez-Lago, Tatiana T

    2014-10-01

    Predator-prey relationships are one of the most studied interactions in population ecology. However, little attention has been paid to the possibility of role exchange between species, despite firm field evidence of such phenomena in nature. In this paper, we build a mathematical model capable of reproducing the main phenomenological features of role reversal in a classical system and present results for both the temporal and spatio-temporal cases. We show that, depending on the choice of parameters, our role-reversal dynamical system exhibits excitable-like behaviour, generating waves of species' concentrations that propagate through space. Our findings fill a long-standing gap in modelling ecological interactions and can be applicable to better understanding ecological niche shifts and planning of sustainable ecosystems. PMID:26064541

  2. Enhancing species distribution modeling by characterizing predator-prey interactions.

    PubMed

    Trainor, Anne M; Schmitz, Oswald J; Ivan, Jacob S; Shenk, Tanya M

    2014-01-01

    Niche theory is a well-established concept integrating a diverse array of environmental variables and multispecies interactions used to describe species geographic distribution. It is now customary to employ species distribution models (SDMs) that use environmental variables in conjunction with species location information to characterize species' niches and map their geographic ranges. The challenge remains, however, to account for the biotic interactions of species with other community members on which they depend. We show here how to connect species spatial distribution and their dependence with other species by modeling spatially explicit predator-prey interactions, which we call a trophic interaction distribution model (TIDM). To develop the principles, we capitalized on data from Canada lynx (Lynx canadensis) reintroduced into Colorado. Spatial location information for lynx obtained from telemetry was used in conjunction with environmental data to construct an SDM. The spatial locations of lynx-snowshoe hare encounters obtained from snow-tracking in conjunction with environmental data were used to construct a TIDM. The environmental conditions associated with lynx locations and lynx-hare encounters identified through both SDM and TIDM revealed an initial transient phase in habitat use that settled into a steady state. Nevertheless, despite the potential for the SDM to broadly encompass all lynx hunting and nonhunting spatial locations, the spatial extents of the SDM and TIDM differed; about 40% of important lynx-snowshoe hare locations identified in the TIDM were not identified in the lynx-only SDM. Our results encourage greater effort to quantify spatial locations of trophic interactions among species in a community and the associated environmental conditions when attempting to construct models aimed at projecting current and future species geographic distributions.

  3. Elevated CO2 Affects Predator-Prey Interactions through Altered Performance

    PubMed Central

    Allan, Bridie J. M.; Domenici, Paolo; McCormick, Mark I.; Watson, Sue-Ann; Munday, Philip L.

    2013-01-01

    Recent research has shown that exposure to elevated carbon dioxide (CO2) affects how fishes perceive their environment, affecting behavioral and cognitive processes leading to increased prey mortality. However, it is unclear if increased mortality results from changes in the dynamics of predator-prey interactions or due to prey increasing activity levels. Here we demonstrate that ocean pCO2 projected to occur by 2100 significantly effects the interactions of a predator-prey pair of common reef fish: the planktivorous damselfish Pomacentrus amboinensis and the piscivorous dottyback Pseudochromis fuscus. Prey exposed to elevated CO2 (880 µatm) or a present-day control (440 µatm) interacted with similarly exposed predators in a cross-factored design. Predators had the lowest capture success when exposed to elevated CO2 and interacting with prey exposed to present-day CO2. Prey exposed to elevated CO2 had reduced escape distances and longer reaction distances compared to prey exposed to present-day CO2 conditions, but this was dependent on whether the prey was paired with a CO2 exposed predator or not. This suggests that the dynamics of predator-prey interactions under future CO2 environments will depend on the extent to which the interacting species are affected and can adapt to the adverse effects of elevated CO2. PMID:23484032

  4. Predator-prey interactions mediated by prey personality and predator hunting mode.

    PubMed

    Belgrad, Benjamin A; Griffen, Blaine D

    2016-04-13

    Predator-prey interactions are important drivers in structuring ecological communities. However, despite widespread acknowledgement that individual behaviours and predator species regulate ecological processes, studies have yet to incorporate individual behavioural variations in a multipredator system. We quantified a prevalent predator avoidance behaviour to examine the simultaneous roles of prey personality and predator hunting mode in governing predator-prey interactions. Mud crabs, Panopeus herbstii, reduce their activity levels and increase their refuge use in the presence of predator cues. We measured mud crab mortality and consistent individual variations in the strength of this predator avoidance behaviour in the presence of predatory blue crabs, Callinectes sapidus, and toadfish, Opsanus tau We found that prey personality and predator species significantly interacted to affect mortality with blue crabs primarily consuming bold mud crabs and toadfish preferentially selecting shy crabs. Additionally, the strength of the predator avoidance behaviour depended upon the predation risk from the predator species. Consequently, the personality composition of populations and predator hunting mode may be valuable predictors of both direct and indirect predator-prey interaction strength. These findings support theories postulating mechanisms for maintaining intraspecies diversity and have broad implications for community dynamics.

  5. Predator-prey interactions mediated by prey personality and predator hunting mode.

    PubMed

    Belgrad, Benjamin A; Griffen, Blaine D

    2016-04-13

    Predator-prey interactions are important drivers in structuring ecological communities. However, despite widespread acknowledgement that individual behaviours and predator species regulate ecological processes, studies have yet to incorporate individual behavioural variations in a multipredator system. We quantified a prevalent predator avoidance behaviour to examine the simultaneous roles of prey personality and predator hunting mode in governing predator-prey interactions. Mud crabs, Panopeus herbstii, reduce their activity levels and increase their refuge use in the presence of predator cues. We measured mud crab mortality and consistent individual variations in the strength of this predator avoidance behaviour in the presence of predatory blue crabs, Callinectes sapidus, and toadfish, Opsanus tau We found that prey personality and predator species significantly interacted to affect mortality with blue crabs primarily consuming bold mud crabs and toadfish preferentially selecting shy crabs. Additionally, the strength of the predator avoidance behaviour depended upon the predation risk from the predator species. Consequently, the personality composition of populations and predator hunting mode may be valuable predictors of both direct and indirect predator-prey interaction strength. These findings support theories postulating mechanisms for maintaining intraspecies diversity and have broad implications for community dynamics. PMID:27075257

  6. Local genetic adaptation generates latitude-specific effects of warming on predator-prey interactions.

    PubMed

    De Block, Marjan; Pauwels, Kevin; Van Den Broeck, Maarten; De Meester, Luc; Stoks, Robby

    2013-03-01

    Temperature effects on predator-prey interactions are fundamental to better understand the effects of global warming. Previous studies never considered local adaptation of both predators and prey at different latitudes, and ignored the novel population combinations of the same predator-prey species system that may arise because of northward dispersal. We set up a common garden warming experiment to study predator-prey interactions between Ischnura elegans damselfly predators and Daphnia magna zooplankton prey from three source latitudes spanning >1500 km. Damselfly foraging rates showed thermal plasticity and strong latitudinal differences consistent with adaptation to local time constraints. Relative survival was higher at 24 °C than at 20 °C in southern Daphnia and higher at 20 °C than at 24 °C, in northern Daphnia indicating local thermal adaptation of the Daphnia prey. Yet, this thermal advantage disappeared when they were confronted with the damselfly predators of the same latitude, reflecting also a signal of local thermal adaptation in the damselfly predators. Our results further suggest the invasion success of northward moving predators as well as prey to be latitude-specific. We advocate the novel common garden experimental approach using predators and prey obtained from natural temperature gradients spanning the predicted temperature increase in the northern populations as a powerful approach to gain mechanistic insights into how community modules will be affected by global warming. It can be used as a space-for-time substitution to inform how predator-prey interaction may gradually evolve to long-term warming.

  7. Local genetic adaptation generates latitude-specific effects of warming on predator-prey interactions.

    PubMed

    De Block, Marjan; Pauwels, Kevin; Van Den Broeck, Maarten; De Meester, Luc; Stoks, Robby

    2013-03-01

    Temperature effects on predator-prey interactions are fundamental to better understand the effects of global warming. Previous studies never considered local adaptation of both predators and prey at different latitudes, and ignored the novel population combinations of the same predator-prey species system that may arise because of northward dispersal. We set up a common garden warming experiment to study predator-prey interactions between Ischnura elegans damselfly predators and Daphnia magna zooplankton prey from three source latitudes spanning >1500 km. Damselfly foraging rates showed thermal plasticity and strong latitudinal differences consistent with adaptation to local time constraints. Relative survival was higher at 24 °C than at 20 °C in southern Daphnia and higher at 20 °C than at 24 °C, in northern Daphnia indicating local thermal adaptation of the Daphnia prey. Yet, this thermal advantage disappeared when they were confronted with the damselfly predators of the same latitude, reflecting also a signal of local thermal adaptation in the damselfly predators. Our results further suggest the invasion success of northward moving predators as well as prey to be latitude-specific. We advocate the novel common garden experimental approach using predators and prey obtained from natural temperature gradients spanning the predicted temperature increase in the northern populations as a powerful approach to gain mechanistic insights into how community modules will be affected by global warming. It can be used as a space-for-time substitution to inform how predator-prey interaction may gradually evolve to long-term warming. PMID:23504827

  8. Evolution of predator-prey interactions in ancient lakes: implications for coevolution in marine environments

    SciTech Connect

    Cohen, A.

    1985-01-01

    Highly generalized predator-prey interrelationships are a hallmark of most lacustrine ecosystems where accommodation to the physical environment plays the major role in determining organismal distributions. Since the vast majority of lakes are ephemeral on a geological and evolutionary times scale, dispersal, rather than organism interaction, appears to be the dominant selective theme in lacustrine species evolution. In a few, very long lasting lakes, notably modern Lakes Tanganyika (Africa) and Baikal (USSR) and ancient lakes of the Brazilian Rift (Cretaceous) and Snake River Plain (Tertiary), invertebrates and fish occur which demonstrate the development of intense biological accommodation in coevolving predator-prey interactions. Shell crushing experiments on 2 endemic Tanganyikan gastropods, Lavigeria nassa and Spekia zonata show them to be comparable to warm temperature marine species in terms of grow load strength: 1-2 orders of magnitude stronger than confamilial cosmopolitan species from more ephemeral lakes in the same region of Africa. Shell repair is commonly observed in these and other Tanganyikan endemic snails although it is exceedingly rare inmost other lakes. The study of these early stages of evolutionary processes and rates in coevolving predator-prey systems in isolated lacustrine microcosms has important implications for those paleontologists concerned with marine invertebrates. It may shed considerable light on the interpretation of such events as the marine Mesozoic Revolution.

  9. Functional responses and scaling in predator-prey interactions of marine fishes: contemporary issues and emerging concepts.

    PubMed

    Hunsicker, Mary E; Ciannelli, Lorenzo; Bailey, Kevin M; Buckel, Jeffrey A; Wilson White, J; Link, Jason S; Essington, Timothy E; Gaichas, Sarah; Anderson, Todd W; Brodeur, Richard D; Chan, Kung-Sik; Chen, Kun; Englund, Göran; Frank, Kenneth T; Freitas, Vânia; Hixon, Mark A; Hurst, Thomas; Johnson, Darren W; Kitchell, James F; Reese, Doug; Rose, George A; Sjodin, Henrik; Sydeman, William J; van der Veer, Henk W; Vollset, Knut; Zador, Stephani

    2011-12-01

    Predator-prey interactions are a primary structuring force vital to the resilience of marine communities and sustainability of the world's oceans. Human influences on marine ecosystems mediate changes in species interactions. This generality is evinced by the cascading effects of overharvesting top predators on the structure and function of marine ecosystems. It follows that ecological forecasting, ecosystem management, and marine spatial planning require a better understanding of food web relationships. Characterising and scaling predator-prey interactions for use in tactical and strategic tools (i.e. multi-species management and ecosystem models) are paramount in this effort. Here, we explore what issues are involved and must be considered to advance the use of predator-prey theory in the context of marine fisheries science. We address pertinent contemporary ecological issues including (1) the approaches and complexities of evaluating predator responses in marine systems; (2) the 'scaling up' of predator-prey interactions to the population, community, and ecosystem level; (3) the role of predator-prey theory in contemporary fisheries and ecosystem modelling approaches; and (4) directions for the future. Our intent is to point out needed research directions that will improve our understanding of predator-prey interactions in the context of the sustainable marine fisheries and ecosystem management.

  10. Acoustic mimicry in a predator-prey interaction.

    PubMed

    Barber, Jesse R; Conner, William E

    2007-05-29

    Mimicry of visual warning signals is one of the keystone concepts in evolutionary biology and has received substantial research attention. By comparison, acoustic mimicry has never been rigorously tested. Visualizing bat-moth interactions with high-speed, infrared videography, we provide empirical evidence for acoustic mimicry in the ultrasonic warning sounds that tiger moths produce in response to echolocating bats. Two species of sound-producing tiger moths were offered successively to naïve, free-flying red and big brown bats. Noctuid and pyralid moth controls were also offered each night. All bats quickly learned to avoid the noxious tiger moths first offered to them, associating the warning sounds with bad taste. They then avoided the second sound-producing species regardless of whether it was chemically protected or not, verifying both Müllerian and Batesian mimicry in the acoustic modality. A subset of the red bats subsequently discovered the palatability of the Batesian mimic, demonstrating the powerful selective force these predators exert on mimetic resemblance. Given these results and the widespread presence of tiger moth species and other sound-producing insects that respond with ultrasonic clicks to bat attack, acoustic mimicry complexes are likely common components of the acoustic landscape.

  11. Predator prey interactions of Procambarus clarkii with aquatic macroinvertebrates in single and multiple prey systems

    NASA Astrophysics Data System (ADS)

    Correia, Alexandra Marçal; Bandeira, Nuno; Anastácio, Pedro Manuel

    2005-11-01

    Understanding the interspecific interactions of Procambarus clarkii with other aquatic macroinvertebrates will help to unveil the mechanisms and processes underlying biological invasiveness. The purpose of this study was to investigate predator-prey interactions of two ontogenic phases of P. clarkii with native and exotic species of aquatic macroinvertebrates at a single and multiple prey level. We performed laboratory experiments to determine the consumption and the behavioral responses of Chironomus riparius, Physa acuta and Corbicula fluminea to P. clarkii. The presence of P. clarkii significantly affected the abundance of C. riparius and P. acuta, but not of C. fluminea whether prey species were provided singly or simultaneously. The consumption of C. riparius by P. clarkii was higher than P. acuta for both crayfish sizes and situations (single/multiple prey systems) and C. fluminea was never consumed. Physa acuta was the only species that exhibited an anti-predator behavior to P. clarkii. Our results show that P. clarkii can have strong consumptive and trait effects on aquatic macroinvertebrate prey at a single and multiple prey level, resulting in differential impacts on different prey species. This study clarifies some aspects of the predator-prey interactions between P. clarkii and native as well as other exotic macroinvertebrate species that have invaded freshwater biocenosis worldwide.

  12. Predator-Prey Interactions Shape Thermal Patch Use in a Newt Larvae-Dragonfly Nymph Model

    PubMed Central

    Gvoždík, Lumír; Černická, Eva; Van Damme, Raoul

    2013-01-01

    Thermal quality and predation risk are considered important factors influencing habitat patch use in ectothermic prey. However, how the predator’s food requirement and the prey’s necessity to avoid predation interact with their respective thermoregulatory strategies remains poorly understood. The recently developed ‘thermal game model’ predicts that in the face of imminent predation, prey should divide their time equally among a range of thermal patches. In contrast, predators should concentrate their hunting activities towards warmer patches. In this study, we test these predictions in a laboratory setup and an artificial environment that mimics more natural conditions. In both cases, we scored thermal patch use of newt larvae (prey) and free-ranging dragonfly nymphs (predators). Similar effects were seen in both settings. The newt larvae spent less time in the warm patch if dragonfly nymphs were present. The patch use of the dragonfly nymphs did not change as a function of prey availability, even when the nymphs were starved prior to the experiment. Our behavioral observations partially corroborate predictions of the thermal game model. In line with asymmetric fitness pay-offs in predator-prey interactions (the ‘life-dinner’ principle), the prey’s thermal strategy is more sensitive to the presence of predators than vice versa. PMID:23755175

  13. Toxicity tests based on predator-prey and competitive interactions between freshwater macroinvertebrates

    SciTech Connect

    Taylor, E.J.; Blockwell, S.J.; Pascoe, D.

    1994-12-31

    Simple multi-species toxicity tests based on the predation of Daphnia magna Straus by Hydra oligactis (Pallas) and competition between Gammarus pulex (L.) and Asellus aquaticus (L.) were used to determine the effects of three reference chemicals. Criteria examined included functional responses; time to first captures; handling times (predator/prey systems) and co-existence and growth. The tests which proved most practicable and sensitive (lowest observed effects 0.1, 21, and 80 {micro}g/l for lindane, copper and 3,4 dichloroaniline, respectively) were: (1) predator-prey tests: determining changes in the size-structure of predated D. magna populations and (2) competition tests: measuring the feeding rate of G. pulex competing with A. aquaticus, using a bioassay based on the time-response analysis of the consumption of Artemia salina eggs. The concentration of a chemical which affected particular response criteria was fond to depend on the test system employed. Results of the tests indicated that effects were often not dose-related and that a given criterion could be variously affected by different test concentrations. The complex pattern of responses may be explained in terms of the differential sensitivity of the interacting species and perhaps subtle alteration in strategies. The sensitivity of the bioassay endpoints is compared to those of a range of single species tests, and their value for predicting the impact pollutants may have upon natural freshwater ecosystems is discussed.

  14. Gyrokinetic turbulence cascade via predator-prey interactions between different scales

    NASA Astrophysics Data System (ADS)

    Kobayashi, Sumire; Gurcan, Ozgur D.

    2015-05-01

    Gyrokinetic simulations in a closed fieldline geometry are presented to explore the physics of nonlinear transfer in plasma turbulence. As spontaneously formed zonal flows and small-scale turbulence demonstrate "predator-prey" dynamics, a particular cascade spectrum emerges. The electrostatic potential and the density spectra appear to be in good agreement with the simple theoretical prediction based on Charney-Hasegawa-Mima equation |ϕ˜ k | 2˜|n˜ k | 2∝k-3/(1+k2 ) 2 , with the spectra becoming anisotropic at small scales. The results indicate that the disparate scale interactions, in particular, the refraction and shearing of larger scale eddies by the self-consistent zonal flows, dominate over local interactions, and contrary to the common wisdom, the comprehensive scaling relation is created even within the energy injection region.

  15. Nonadditive impacts of temperature and basal resource availability on predator-prey interactions and phenotypes.

    PubMed

    Costa, Zacharia J; Kishida, Osamu

    2015-08-01

    Predicting the impacts of climate change on communities requires understanding how temperature affects predator-prey interactions under different biotic conditions. In cases of size-specific predation, environmental influences on the growth rate of one or both species can determine predation rates. For example, warming increases top-down control of food webs, although this depends on resource availability for prey, as increased resources may allow prey to reach a size refuge. Moreover, because the magnitude of inducible defenses depends on predation rates and resource availability for prey, temperature and resource levels also affect phenotypic plasticity. To examine these issues, we manipulated the presence/absence of predatory Hynobius retardatus salamander larvae and herbivorous Rana pirica tadpoles at two temperatures and three basal resource levels. and measured their morphology, behavior, growth and survival. Prior work has shown that both species express antagonistic plasticity against one another in which salamanders enlarge their gape width and tadpoles increase their body width to reach a size-refuge. We found that increased temperatures increased predation rates, although this was counteracted by high basal resource availability, which further decreased salamander growth. Surprisingly, salamanders caused tadpoles to grow larger and express more extreme defensive phenotypes as resource levels decreased under warming, most likely due to their increased risk of predation. Thus, temperature and resources influenced defensive phenotype expression and its impacts on predator and prey growth by affecting their interaction strength. Our results indicate that basal resource levels can modify the impacts of increased temperatures on predator-prey interactions and its consequences for food webs.

  16. Predator-prey interactions between blue crabs and ribbed mussels living in clumps

    NASA Astrophysics Data System (ADS)

    Lin, Junda

    1991-01-01

    Predator-prey interactions between blue crabs ( Callinectes sapidus) and ribbed mussels ( Geukensia demissa) were studied by manipulating different components of mussel clump structure in the laboratory to test their effects on the mussels' susceptibility to crab predation. Mussels with stronger attachment strength or those buried deeper in the sediment suffered lower mortality. Blue crabs showed no significant size selectivity when two size classes of mussles (30-40 and 50-60 mm in shell heights) were offered. When juvenile mussels were attached to adult conspecifics and completely buried in the centres of clumps as in the field, blue crabs did not actively search for them. The crabs, however, did consume juveniles as by-products when they preyed upon the adult mussels to which the juveniles were attached.

  17. Do Predators Always Win? Starfish versus Limpets: A Hands-On Activity Examining Predator-Prey Interactions

    ERIC Educational Resources Information Center

    Faria, Claudia; Boaventura, Diana; Galvao, Cecilia; Chagas, Isabel

    2011-01-01

    In this article we propose a hands-on experimental activity about predator-prey interactions that can be performed both in a research laboratory and in the classroom. The activity, which engages students in a real scientific experiment, can be explored not only to improve students' understanding about the diversity of anti-predator behaviors but…

  18. Predicting the effects of ocean acidification on predator-prey interactions: a conceptual framework based on coastal molluscs.

    PubMed

    Kroeker, Kristy J; Sanford, Eric; Jellison, Brittany M; Gaylord, Brian

    2014-06-01

    The influence of environmental change on species interactions will affect population dynamics and community structure in the future, but our current understanding of the outcomes of species interactions in a high-CO2 world is limited. Here, we draw upon emerging experimental research examining the effects of ocean acidification on coastal molluscs to provide hypotheses of the potential impacts of high-CO2 on predator-prey interactions. Coastal molluscs, such as oysters, mussels, and snails, allocate energy among defenses, growth, and reproduction. Ocean acidification increases the energetic costs of physiological processes such as acid-base regulation and calcification. Impacted molluscs can display complex and divergent patterns of energy allocation to defenses and growth that may influence predator-prey interactions; these include changes in shell properties, body size, tissue mass, immune function, or reproductive output. Ocean acidification has also been shown to induce complex changes in chemoreception, behavior, and inducible defenses, including altered cue detection and predator avoidance behaviors. Each of these responses may ultimately alter the susceptibility of coastal molluscs to predation through effects on predator handling time, satiation, and search time. While many of these effects may manifest as increases in per capita predation rates on coastal molluscs, the ultimate outcome of predator-prey interactions will also depend on how ocean acidification affects the specified predators, which also exhibit complex responses to ocean acidification. Changes in predator-prey interactions could have profound and unexplored consequences for the population dynamics of coastal molluscs in a high-CO2 ocean.

  19. Infrared tomographic PIV and 3D motion tracking system applied to aquatic predator-prey interaction

    NASA Astrophysics Data System (ADS)

    Adhikari, Deepak; Longmire, Ellen K.

    2013-02-01

    Infrared tomographic PIV and 3D motion tracking are combined to measure evolving volumetric velocity fields and organism trajectories during aquatic predator-prey interactions. The technique was used to study zebrafish foraging on both non-evasive and evasive prey species. Measurement volumes of 22.5 mm × 10.5 mm × 12 mm were reconstructed from images captured on a set of four high-speed cameras. To obtain accurate fluid velocity vectors within each volume, fish were first masked out using an automated visual hull method. Fish and prey locations were identified independently from the same image sets and tracked separately within the measurement volume. Experiments demonstrated that fish were not influenced by the infrared laser illumination or the tracer particles. Results showed that the zebrafish used different strategies, suction and ram feeding, for successful capture of non-evasive and evasive prey, respectively. The two strategies yielded different variations in fluid velocity between the fish mouth and the prey. In general, the results suggest that the local flow field, the direction of prey locomotion with respect to the predator and the relative accelerations and speeds of the predator and prey may all be significant in determining predation success.

  20. Effects of Endosulfan on Predator-Prey Interactions Between Catfish and Schistosoma Host Snails.

    PubMed

    Monde, Concillia; Syampungani, Stephen; Van den Brink, Paul J

    2016-08-01

    The effect of the pesticide endosulfan on predator-prey interactions between catfish and Schistosoma host snails was assessed in static tank experiments. Hybrid catfish (Clarias gariepinus × C. ngamensis) and Bulinus globosus were subjected to various endosulfan concentrations including an untreated control. The 48- and 96-h LC50 values for catfish were 1.0 and <0.5 µg/L, respectively, whereas the 48- and 96-h LC50 values for snails were 1137 and 810 µg/L. To assess sublethal effects on the feeding of the catfish on B. globosus, endosulfan concentrations between 0.03 and 1.0 µg/L were used. Predation was significantly greater (p < 0.001) in control tanks than in all other treatments. There was progressively decreasing predation with increasing toxicant concentration. Biological control of Schistosoma host snails using fish may be affected in endosulfan-polluted aquatic systems of Southern Africa because it has been found present at concentrations that are indicated to cause lethal effects on the evaluated hybrid catfish and to inhibit the predation of snails by this hybrid catfish. PMID:27033099

  1. How moths escape bats: predicting outcomes of predator-prey interactions.

    PubMed

    Corcoran, Aaron J; Conner, William E

    2016-09-01

    What determines whether fleeing prey escape from attacking predators? To answer this question, biologists have developed mathematical models that incorporate attack geometries, pursuit and escape trajectories, and kinematics of predator and prey. These models have rarely been tested using data from actual predator-prey encounters. To address this problem, we recorded multi-camera infrared videography of bat-insect interactions in a large outdoor enclosure. We documented 235 attacks by four Myotis volans bats on a variety of moths. Bat and moth flight trajectories from 50 high-quality attacks were reconstructed in 3-D. Despite having higher maximum velocity, deceleration and overall turning ability, bats only captured evasive prey in 69 of 184 attacks (37.5%); bats captured nearly all moths not evading attack (50 of 51; 98%). Logistic regression indicated that prey radial acceleration and escape angle were the most important predictors of escape success (44 of 50 attacks correctly classified; 88%). We found partial support for the turning gambit mathematical model; however, it underestimated the escape threshold by 25% of prey velocity and did not account for prey escape angle. Whereas most prey escaping strikes flee away from predators, moths typically escaped chasing bats by turning with high radial acceleration toward 'safety zones' that flank the predator. This strategy may be widespread in prey engaged in chases. Based on these findings, we developed a novel geometrical model of predation. We discuss implications of this model for the co-evolution of predator and prey kinematics and pursuit and escape strategies.

  2. Not So Fast: Swimming Behavior of Sailfish during Predator-Prey Interactions using High-Speed Video and Accelerometry.

    PubMed

    Marras, Stefano; Noda, Takuji; Steffensen, John F; Svendsen, Morten B S; Krause, Jens; Wilson, Alexander D M; Kurvers, Ralf H J M; Herbert-Read, James; Boswell, Kevin M; Domenici, Paolo

    2015-10-01

    Billfishes are considered among the fastest swimmers in the oceans. Despite early estimates of extremely high speeds, more recent work showed that these predators (e.g., blue marlin) spend most of their time swimming slowly, rarely exceeding 2 m s(-1). Predator-prey interactions provide a context within which one may expect maximal speeds both by predators and prey. Beyond speed, however, an important component determining the outcome of predator-prey encounters is unsteady swimming (i.e., turning and accelerating). Although large predators are faster than their small prey, the latter show higher performance in unsteady swimming. To contrast the evading behaviors of their highly maneuverable prey, sailfish and other large aquatic predators possess morphological adaptations, such as elongated bills, which can be moved more rapidly than the whole body itself, facilitating capture of the prey. Therefore, it is an open question whether such supposedly very fast swimmers do use high-speed bursts when feeding on evasive prey, in addition to using their bill for slashing prey. Here, we measured the swimming behavior of sailfish by using high-frequency accelerometry and high-speed video observations during predator-prey interactions. These measurements allowed analyses of tail beat frequencies to estimate swimming speeds. Our results suggest that sailfish burst at speeds of about 7 m s(-1) and do not exceed swimming speeds of 10 m s(-1) during predator-prey interactions. These speeds are much lower than previous estimates. In addition, the oscillations of the bill during swimming with, and without, extension of the dorsal fin (i.e., the sail) were measured. We suggest that extension of the dorsal fin may allow sailfish to improve the control of the bill and minimize its yaw, hence preventing disturbance of the prey. Therefore, sailfish, like other large predators, may rely mainly on accuracy of movement and the use of the extensions of their bodies, rather than resorting

  3. Clay Caterpillar Whodunit: A Customizable Method for Studying Predator-Prey Interactions in the Field

    ERIC Educational Resources Information Center

    Curtis, Rachel; Klemens, Jeffrey A.; Agosta, Salvatore J.; Bartlow, Andrew W.; Wood, Steve; Carlson, Jason A.; Stratford, Jeffrey A.; Steele, Michael A.

    2013-01-01

    Predator-prey dynamics are an important concept in ecology, often serving as an introduction to the field of community ecology. However, these dynamics are difficult for students to observe directly. We describe a methodology that employs model caterpillars made of clay to estimate rates of predator attack on a prey species. This approach can be…

  4. How moths escape bats: predicting outcomes of predator-prey interactions.

    PubMed

    Corcoran, Aaron J; Conner, William E

    2016-09-01

    What determines whether fleeing prey escape from attacking predators? To answer this question, biologists have developed mathematical models that incorporate attack geometries, pursuit and escape trajectories, and kinematics of predator and prey. These models have rarely been tested using data from actual predator-prey encounters. To address this problem, we recorded multi-camera infrared videography of bat-insect interactions in a large outdoor enclosure. We documented 235 attacks by four Myotis volans bats on a variety of moths. Bat and moth flight trajectories from 50 high-quality attacks were reconstructed in 3-D. Despite having higher maximum velocity, deceleration and overall turning ability, bats only captured evasive prey in 69 of 184 attacks (37.5%); bats captured nearly all moths not evading attack (50 of 51; 98%). Logistic regression indicated that prey radial acceleration and escape angle were the most important predictors of escape success (44 of 50 attacks correctly classified; 88%). We found partial support for the turning gambit mathematical model; however, it underestimated the escape threshold by 25% of prey velocity and did not account for prey escape angle. Whereas most prey escaping strikes flee away from predators, moths typically escaped chasing bats by turning with high radial acceleration toward 'safety zones' that flank the predator. This strategy may be widespread in prey engaged in chases. Based on these findings, we developed a novel geometrical model of predation. We discuss implications of this model for the co-evolution of predator and prey kinematics and pursuit and escape strategies. PMID:27340205

  5. Patterns formations in a diffusive ratio-dependent predator-prey model of interacting populations

    NASA Astrophysics Data System (ADS)

    Camara, B. I.; Haque, M.; Mokrani, H.

    2016-11-01

    The present investigation deals with the analysis of the spatial pattern formation of a diffusive predator-prey system with ratio-dependent functional response involving the influence of intra-species competition among predators within two-dimensional space. The appropriate condition of Turing instability around the interior equilibrium point of the present model has been determined. The emergence of complex patterns in the diffusive predator-prey model is illustrated through numerical simulations. These results are based on the existence of bifurcations of higher codimension such as Turing-Hopf, Turing-Saddle-node, Turing-Transcritical bifurcation, and the codimension- 3 ​Turing-Takens-Bogdanov bifurcation. The paper concludes with discussions of our results in ecology.

  6. Spatial ecology of predator-prey interactions: corridors and patch shape influence seed predation.

    SciTech Connect

    J. L . Orrock; B. J. Danielson; M. J. Burns; D. J. Levey

    2003-02-03

    J.L. Orrock, B.J. Danielson, M.J. Burns, and D.J. Levey. 2003. Spatial ecology of predator-prey interactions: corridors and patch shape influence seed predation. Ecology, 84(10):2589-2599. Abstract: Corridors that connect patches of disjunct habitat may be promising tools for mediating the negative impacts of habitat fragmentation, but little is known about how corridors affect ecological interactions. In eight 12-ha experimental landscapes, we examined how corridors affect the impact of invertebrate, rodent, and avian seed predators on pokeweed, Phytolacca americana. Over 13 months in 2000 and 2001, we quantified the effects of patch shape, connectivity, and predator type on the number of seeds germinating in the field (germinants), seed removal, and the viability of remaining seeds. Corridors did not affect the number of P. americana germinants in experimental exclosures or the viability of seeds remaining in exclosures. However, corridors affected the removal of seeds in a predator-specific manner: invertebrates removed more seeds in unconnected patches, whereas rodents removed more seeds in connected patches. Seed removal by birds was similar in connected and unconnected patches. Total seed removal by all seed predators was not affected by corridors, because invertebrates removed more seeds where rodents removed fewer seeds, and vice versa. Overall, seed predation signi®cantly reduced the number and viability of remaining seeds, and reduced the number of germinants in 2000 but not in 2001. The abundance of naturally occurring P. americana plants in our experimental patches in 2000 decreased with increasing seed removal from exclosures but was not related to viability or germinants in 2000, suggesting that seed removal may shape the distribution and abundance of this species. Complementary patterns of seed removal by rodents and invertebrates suggest that corridors alter the effects of these predator taxa by changing the relative amounts of edge and core

  7. Interactive influence of biotic and abiotic cues on the plasticity of preferred body temperatures in a predator-prey system.

    PubMed

    Smolinský, Radovan; Gvoždík, Lumír

    2012-09-01

    The ability to modify phenotypes in response to heterogeneity of the thermal environment represents an important component of an ectotherm's non-genetic adaptive capacity. Despite considerable attention being dedicated to the study of thermally-induced developmental plasticity, whether or not interspecific interactions shape the plastic response in both a predator and its prey remains unknown. We tested several predictions about the joint influence of predator/prey scents and thermal conditions on the plasticity of preferred body temperatures (T (p)) in both actors of this interaction, using a dragonfly nymphs-newt larvae system. Dragonfly nymphs (Aeshna cyanea) and newt eggs (Ichthyosaura alpestris) were subjected to fluctuating cold and warm thermal regimes (7-12 and 12-22°C, respectively) and the presence/absence of a predator or prey chemical cues. Preferred body temperatures were measured in an aquatic thermal gradient (5-33°C) over a 24-h period. Newt T (p) increased with developmental temperature irrespective of the presence/absence of predator cues. In dragonflies, thermal reaction norms for T (p) were affected by the interaction between temperature and prey cues. Specifically, the presence of newt scents in cold regime lowered dragonfly T (p). We concluded that predator-prey interactions influenced thermally-induced plasticity of T (p) but not in a reciprocal fashion. The occurrence of frequency-dependent thermal plasticity may have broad implications for predator-prey population dynamics, the evolution of thermal biology traits, and the consequences of sustaining climate change within ecological communities.

  8. Turbulence, Temperature, and Turbidity: The Ecomechanics of Predator-Prey Interactions in Fishes.

    PubMed

    Higham, Timothy E; Stewart, William J; Wainwright, Peter C

    2015-07-01

    Successful feeding and escape behaviors in fishes emerge from precise integration of locomotion and feeding movements. Fishes inhabit a wide range of habitats, including still ponds, turbulent rivers, and wave-pounded shorelines, and these habitats vary in several physical variables that can strongly impact both predator and prey. Temperature, the conditions of ambient flow, and light regimes all have the potential to affect predator-prey encounters, yet the integration of these factors into our understanding of fish biomechanics is presently limited. We explore existing knowledge of kinematics, muscle function, hydrodynamics, and evolutionary morphology in order to generate a framework for understanding the ecomechanics of predator-prey encounters in fishes. We expect that, in the absence of behavioral compensation, a decrease in temperature below the optimum value will reduce the muscle power available both to predator and prey, thus compromising locomotor performance, suction-feeding mechanics of predators, and the escape responses of prey. Ambient flow, particularly turbulent flow, will also challenge predator and prey, perhaps resulting in faster attacks by predators to minimize mechanical instability, and a reduced responsiveness of prey to predator-generated flow. Reductions in visibility, caused by depth, turbidity, or diel fluctuations in light, will decrease distances at which either predator or prey detect each other, and generally place a greater emphasis on the role of mechanoreception both for predator and prey. We expect attack distances to be shortened when visibility is low. Ultimately, the variation in abiotic features of a fish's environment will affect locomotion and feeding performance of predators, and the ability of the prey to escape. The nature of these effects and how they impact predator-prey encounters stands as a major challenge for future students of the biomechanics of fish during feeding. Just as fishes show adaptations for capturing

  9. Mathematical model for cell competition: Predator-prey interactions at the interface between two groups of cells in monolayer tissue.

    PubMed

    Nishikawa, Seiya; Takamatsu, Atsuko; Ohsawa, Shizue; Igaki, Tatsushi

    2016-09-01

    The phenomenon of 'cell competition' has been implicated in the normal development and maintenance of organs, such as in the regulation of organ size and suppression of neoplastic development. In cell competition, one group of cells competes with another group through an interaction at their interface. Which cell group "wins" is governed by a certain relative fitness within the cells. However, this idea of cellular fitness has not been clearly defined. We construct two types of mathematical models to describe this phenomenon of cell competition by considering the interaction at the interface as a predator-prey type interaction in a monolayer tissue such as epithelium. Both of these models can reproduce several typical experimental observations involving systems of mutant cells (losers) and normal cells (winners). By analyzing one of the model and defining an index for the degree of fitness in groups of cells, we show that the fate of each group mainly depends on the relative carrying capacities of certain resources and the strength of the predator-prey interaction at the interface. This contradicts the classical hypothesis in which the relative proliferation rate determines the winner.

  10. Feeling the heat: the effect of acute temperature changes on predator-prey interactions in coral reef fish.

    PubMed

    Allan, Bridie J M; Domenici, Paolo; Munday, Phillip L; McCormick, Mark I

    2015-01-01

    Recent studies demonstrate that the elevated temperatures predicted to occur by the end of the century can affect the physiological performance and behaviour of larval and juvenile fishes; however, little is known of the effect of these temperatures on ecological processes, such as predator-prey interactions. Here, we show that exposure to elevated temperatures significantly affected the predator-prey interactions of a pair of common reef fish, the planktivorous damselfish (Pomacentrus wardi) and the piscivorous dottyback (Pseudochromis fuscus). When predators exposed to elevated temperatures interacted with prey exposed in a similar manner, maximal attack speeds increased. This effect coupled with decreasing prey escape speeds and escape distances led to increased predation rates. Prey exposed to elevated temperatures also had decreased reaction distances and increased apparent looming threshold, suggesting that their sensory performance was affected. This occurred despite the increase in maximal attack speeds, which in other species has been shown to increase reaction distances. These results suggest that the escape performance of prey is sensitive to short-term increases in ambient temperature. As marine environments become more thermally variable in the future, our results demonstrate that some predators may become more successful, suggesting that there will be strong selection for the maintenance of maximal escape performance in prey. In the present era of rapid climate change, understanding how changes to individual performance influence the relationships between predators and their prey will be increasingly important in predicting the effects of climate change within ecosystems.

  11. Feeling the heat: the effect of acute temperature changes on predator-prey interactions in coral reef fish.

    PubMed

    Allan, Bridie J M; Domenici, Paolo; Munday, Phillip L; McCormick, Mark I

    2015-01-01

    Recent studies demonstrate that the elevated temperatures predicted to occur by the end of the century can affect the physiological performance and behaviour of larval and juvenile fishes; however, little is known of the effect of these temperatures on ecological processes, such as predator-prey interactions. Here, we show that exposure to elevated temperatures significantly affected the predator-prey interactions of a pair of common reef fish, the planktivorous damselfish (Pomacentrus wardi) and the piscivorous dottyback (Pseudochromis fuscus). When predators exposed to elevated temperatures interacted with prey exposed in a similar manner, maximal attack speeds increased. This effect coupled with decreasing prey escape speeds and escape distances led to increased predation rates. Prey exposed to elevated temperatures also had decreased reaction distances and increased apparent looming threshold, suggesting that their sensory performance was affected. This occurred despite the increase in maximal attack speeds, which in other species has been shown to increase reaction distances. These results suggest that the escape performance of prey is sensitive to short-term increases in ambient temperature. As marine environments become more thermally variable in the future, our results demonstrate that some predators may become more successful, suggesting that there will be strong selection for the maintenance of maximal escape performance in prey. In the present era of rapid climate change, understanding how changes to individual performance influence the relationships between predators and their prey will be increasingly important in predicting the effects of climate change within ecosystems. PMID:27293696

  12. A link between water availability and nesting success mediated by predator-prey interactions in the Arctic.

    PubMed

    Lecomte, Nicolas; Gauthier, Gilles; Giroux, Jean-François

    2009-02-01

    Although water availability is primarily seen as a factor affecting food availability (a bottom-up process), we examined its effect on predator-prey interactions through an influence on prey behavior (a top-down process). We documented a link between water availability, predation risk, and reproductive success in a goose species (Chen caerulescens atlantica) inhabiting an Arctic environment where water is not considered a limited commodity. To reach water sources during incubation recesses, geese nesting in mesic tundra (low water availability) must move almost four times as far from their nest than those nesting in wetlands, which reduced their ability to defend their nest against predators and led to a higher predation rate. Nesting success was improved in high rainfall years due to increased water availability, and more so for geese nesting in the low water availability habitat. Likewise, nesting success was improved in years where the potential for evaporative water loss (measured by the atmospheric water vapor pressure) was low, presumably because females had to leave their nest less often to drink. Females from water-supplemented nests traveled a shorter distance to drink, and their nesting success was enhanced by 20% compared to the control. This shows that water availability and rainfall can have a strong effect on predator-prey dynamics and that changes in precipitation brought by climate change could have an impact on some Arctic species through a top-down effect.

  13. Predator-prey spatial game as a tool to understand the effects of protected areas on harvester-wildlife interactions.

    PubMed

    Tolon, Vincent; Martin, Jodie; Dray, Stéphane; Loison, Anne; Fischer, Claude; Baubet, Eric

    2012-03-01

    No-take reserves are sometimes implemented for sustainable population harvesting because they offer opportunities for animals to spatially avoid harvesters, whereas harvesters can benefit in return from the reserve spillover. Here, we used the framework of predator-prey spatial games to understand how protected areas shape spatial interactions between harvesters and target species and determine animal mortality. In these spatial games, the "predator" searches for "prey" and matches their habitat use, unless it meets spatial constraints offering the opportunity for prey to avoid the mortality source. However, such prey refuges could attract predators in the surroundings, which questions the potential benefits for prey. We located, in the Geneva Basin (France), hunting dogs and wild boar Sus scrofa L. during hunting seasons with global positioning systems and very-high-frequency collars. We quantified how the proximity of the reserve shaped the matching between both habitat uses using multivariate analyses and linked these patterns to animals' mortality with a Cox regression analysis. Results showed that habitat uses by both protagonists disassociated only when hunters were spatially constrained by the reserve. In response, hunters increased hunting efforts near the reserve boundary, which induced a higher risk exposure for animals settled over the reserve. The mortality of adult wild boar decreased near the reserve as the mismatch between both habitat uses increased. However the opposite pattern was determined for younger individuals that suffered from the high level of hunting close to the reserve. The predator-prey analogy was an accurate prediction of how the protected area modified spatial relationships between harvesters and target species. Prey-searching strategies adopted by hunters around reserves strongly impacted animal mortality and the efficiency of the protected area for this harvested species. Increasing reserve sizes and/or implementing buffer areas

  14. Influence of density dependence on predator-prey seabird interactions at large spatio-temporal scales.

    PubMed

    Oro, Daniel; Martínez-Abraín, Alejandro; Paracuellos, Mariano; Nevado, Juan Carlos; Genovart, Meritxell

    2006-02-01

    Theoretical investigations of competitive dynamics have noted that numbers of predator and prey influence each other. However, few empirical studies have demonstrated how a life-history trait of the prey (such as fecundity) can be affected simultaneously by its own density and the density of predators. For instance, density dependence can reduce fecundity with increasing number of prey, while inverse density dependence or Allee effects may occur especially when the prey is a social organism. Here we analysed an intraguild predator-prey system of two seabird species at a large spatio-temporal scale. As expected, we found that fecundity of prey was negatively affected by predator density. Nevertheless, fecundity of prey also increased nonlinearly with its own density and strikingly with the prey-predator ratio. Small groups of prey were probably not able to defend their nests especially against large number of predators. At the highest prey densities (i.e. when anti-predator strategies should be most efficient), prey fecundity also lowered, suggesting the appearance of density dependence mediated by food competition. Allee effects and density dependence occurred across a broad range of population sizes of both the prey and the predator at several local populations facing different ecological environments. PMID:16543182

  15. Inducible offences affect predator-prey interactions and life-history plasticity in both predators and prey.

    PubMed

    Kishida, Osamu; Costa, Zacharia; Tezuka, Ayumi; Michimae, Hirofumi

    2014-07-01

    Phenotypic plasticity can have strong impacts on predator-prey interactions. Although much work has examined the effects of inducible defences, less understood is how inducible offences in predators affect predator-prey interactions and predator and prey phenotypes. Here, we examine the impacts of an inducible offence on the interactions and life histories of a cohort of predatory Hynobius retardatus salamander larvae and their prey, Rana pirica tadpoles. We examined larval (duration, survival) and post-metamorphic (size) traits of both species after manipulating the presence/absence of tadpoles and salamanders with offensive (broadened gape width) or non-offensive phenotypes in pond enclosures. Offensive phenotype salamanders reduced tadpole survival and metamorph emergence by 58% compared to tadpole-only treatments, and by over 30% compared to non-offensive phenotypes. Average time to metamorphosis of frogs was delayed by 30% in the presence of salamanders, although this was independent of salamander phenotype. Thus, offensive phenotype salamanders reduced the number of tadpoles remaining in the pond over time by reducing tadpole survival, not by altering patterns of metamorph emergence. Offensive phenotypes also caused tadpoles to metamorphose 19% larger than no salamander treatments and 6% larger than non-offensive phenotype treatments. Pooled across salamander treatments, tadpoles caused salamanders to reach metamorphosis faster and larger. Moreover, in the presence of tadpoles, offensive phenotype salamanders metamorphosed 25% faster and 5% larger than non-offensive phenotype salamanders, but in their absence, neither their size nor larval period differed from non-offensive phenotype individuals. To our knowledge, this study is the first to demonstrate that inducible offences in predators can have strong impacts on predator and prey phenotypes across multiple life stages. Since early metamorphosis at a larger size has potential fitness advantages, the impacts

  16. Evolution determines how global warming and pesticide exposure will shape predator-prey interactions with vector mosquitoes.

    PubMed

    Tran, Tam T; Janssens, Lizanne; Dinh, Khuong V; Op de Beeck, Lin; Stoks, Robby

    2016-07-01

    How evolution may mitigate the effects of global warming and pesticide exposure on predator-prey interactions is directly relevant for vector control. Using a space-for-time substitution approach, we addressed how 4°C warming and exposure to the pesticide endosulfan shape the predation on Culex pipiens mosquitoes by damselfly predators from replicated low- and high-latitude populations. Although warming was only lethal for the mosquitoes, it reduced predation rates on these prey. Possibly, under warming escape speeds of the mosquitoes increased more than the attack efficiency of the predators. Endosulfan imposed mortality and induced behavioral changes (including increased filtering and thrashing and a positional shift away from the bottom) in mosquito larvae. Although the pesticide was only lethal for the mosquitoes, it reduced predation rates by the low-latitude predators. This can be explained by the combination of the evolution of a faster life history and associated higher vulnerabilities to the pesticide (in terms of growth rate and lowered foraging activity) in the low-latitude predators and pesticide-induced survival selection in the mosquitoes. Our results suggest that predation rates on mosquitoes at the high latitude will be reduced under warming unless predators evolve toward the current low-latitude phenotype or low-latitude predators move poleward.

  17. Coevolution can reverse predator-prey cycles.

    PubMed

    Cortez, Michael H; Weitz, Joshua S

    2014-05-20

    A hallmark of Lotka-Volterra models, and other ecological models of predator-prey interactions, is that in predator-prey cycles, peaks in prey abundance precede peaks in predator abundance. Such models typically assume that species life history traits are fixed over ecologically relevant time scales. However, the coevolution of predator and prey traits has been shown to alter the community dynamics of natural systems, leading to novel dynamics including antiphase and cryptic cycles. Here, using an eco-coevolutionary model, we show that predator-prey coevolution can also drive population cycles where the opposite of canonical Lotka-Volterra oscillations occurs: predator peaks precede prey peaks. These reversed cycles arise when selection favors extreme phenotypes, predator offense is costly, and prey defense is effective against low-offense predators. We present multiple datasets from phage-cholera, mink-muskrat, and gyrfalcon-rock ptarmigan systems that exhibit reversed-peak ordering. Our results suggest that such cycles are a potential signature of predator-prey coevolution and reveal unique ways in which predator-prey coevolution can shape, and possibly reverse, community dynamics.

  18. Coevolution can reverse predator-prey cycles.

    PubMed

    Cortez, Michael H; Weitz, Joshua S

    2014-05-20

    A hallmark of Lotka-Volterra models, and other ecological models of predator-prey interactions, is that in predator-prey cycles, peaks in prey abundance precede peaks in predator abundance. Such models typically assume that species life history traits are fixed over ecologically relevant time scales. However, the coevolution of predator and prey traits has been shown to alter the community dynamics of natural systems, leading to novel dynamics including antiphase and cryptic cycles. Here, using an eco-coevolutionary model, we show that predator-prey coevolution can also drive population cycles where the opposite of canonical Lotka-Volterra oscillations occurs: predator peaks precede prey peaks. These reversed cycles arise when selection favors extreme phenotypes, predator offense is costly, and prey defense is effective against low-offense predators. We present multiple datasets from phage-cholera, mink-muskrat, and gyrfalcon-rock ptarmigan systems that exhibit reversed-peak ordering. Our results suggest that such cycles are a potential signature of predator-prey coevolution and reveal unique ways in which predator-prey coevolution can shape, and possibly reverse, community dynamics. PMID:24799689

  19. Interaction between coastal and oceanic ecosystems of the Western and Central Pacific Ocean through predator-prey relationship studies.

    PubMed

    Allain, Valerie; Fernandez, Emilie; Hoyle, Simon D; Caillot, Sylvain; Jurado-Molina, Jesus; Andréfouët, Serge; Nicol, Simon J

    2012-01-01

    The Western and Central Pacific Ocean sustains the highest tuna production in the world. This province is also characterized by many islands and a complex bathymetry that induces specific current circulation patterns with the potential to create a high degree of interaction between coastal and oceanic ecosystems. Based on a large dataset of oceanic predator stomach contents, our study used generalized linear models to explore the coastal-oceanic system interaction by analyzing predator-prey relationship. We show that reef organisms are a frequent prey of oceanic predators. Predator species such as albacore (Thunnus alalunga) and yellowfin tuna (Thunnus albacares) frequently consume reef prey with higher probability of consumption closer to land and in the western part of the Pacific Ocean. For surface-caught-predators consuming reef prey, this prey type represents about one third of the diet of predators smaller than 50 cm. The proportion decreases with increasing fish size. For predators caught at depth and consuming reef prey, the proportion varies with predator species but generally represents less than 10%. The annual consumption of reef prey by the yellowfin tuna population was estimated at 0.8 ± 0.40 CV million tonnes or 2.17 × 10(12)± 0.40 CV individuals. This represents 6.1% ± 0.17 CV in weight of their diet. Our analyses identify some of the patterns of coastal-oceanic ecosystem interactions at a large scale and provides an estimate of annual consumption of reef prey by oceanic predators.

  20. Interaction between coastal and oceanic ecosystems of the Western and Central Pacific Ocean through predator-prey relationship studies.

    PubMed

    Allain, Valerie; Fernandez, Emilie; Hoyle, Simon D; Caillot, Sylvain; Jurado-Molina, Jesus; Andréfouët, Serge; Nicol, Simon J

    2012-01-01

    The Western and Central Pacific Ocean sustains the highest tuna production in the world. This province is also characterized by many islands and a complex bathymetry that induces specific current circulation patterns with the potential to create a high degree of interaction between coastal and oceanic ecosystems. Based on a large dataset of oceanic predator stomach contents, our study used generalized linear models to explore the coastal-oceanic system interaction by analyzing predator-prey relationship. We show that reef organisms are a frequent prey of oceanic predators. Predator species such as albacore (Thunnus alalunga) and yellowfin tuna (Thunnus albacares) frequently consume reef prey with higher probability of consumption closer to land and in the western part of the Pacific Ocean. For surface-caught-predators consuming reef prey, this prey type represents about one third of the diet of predators smaller than 50 cm. The proportion decreases with increasing fish size. For predators caught at depth and consuming reef prey, the proportion varies with predator species but generally represents less than 10%. The annual consumption of reef prey by the yellowfin tuna population was estimated at 0.8 ± 0.40 CV million tonnes or 2.17 × 10(12)± 0.40 CV individuals. This represents 6.1% ± 0.17 CV in weight of their diet. Our analyses identify some of the patterns of coastal-oceanic ecosystem interactions at a large scale and provides an estimate of annual consumption of reef prey by oceanic predators. PMID:22615796

  1. Interaction between Coastal and Oceanic Ecosystems of the Western and Central Pacific Ocean through Predator-Prey Relationship Studies

    PubMed Central

    Allain, Valerie; Fernandez, Emilie; Hoyle, Simon D.; Caillot, Sylvain; Jurado-Molina, Jesus; Andréfouët, Serge; Nicol, Simon J.

    2012-01-01

    The Western and Central Pacific Ocean sustains the highest tuna production in the world. This province is also characterized by many islands and a complex bathymetry that induces specific current circulation patterns with the potential to create a high degree of interaction between coastal and oceanic ecosystems. Based on a large dataset of oceanic predator stomach contents, our study used generalized linear models to explore the coastal-oceanic system interaction by analyzing predator-prey relationship. We show that reef organisms are a frequent prey of oceanic predators. Predator species such as albacore (Thunnus alalunga) and yellowfin tuna (Thunnus albacares) frequently consume reef prey with higher probability of consumption closer to land and in the western part of the Pacific Ocean. For surface-caught-predators consuming reef prey, this prey type represents about one third of the diet of predators smaller than 50 cm. The proportion decreases with increasing fish size. For predators caught at depth and consuming reef prey, the proportion varies with predator species but generally represents less than 10%. The annual consumption of reef prey by the yellowfin tuna population was estimated at 0.8±0.40CV million tonnes or 2.17×1012±0.40CV individuals. This represents 6.1%±0.17CV in weight of their diet. Our analyses identify some of the patterns of coastal-oceanic ecosystem interactions at a large scale and provides an estimate of annual consumption of reef prey by oceanic predators. PMID:22615796

  2. Gyrokinetic turbulence cascade via predator-prey interactions between different scales

    SciTech Connect

    Kobayashi, Sumire Gurcan, Ozgur D.

    2015-05-15

    Gyrokinetic simulations in a closed fieldline geometry are presented to explore the physics of nonlinear transfer in plasma turbulence. As spontaneously formed zonal flows and small-scale turbulence demonstrate “predator-prey” dynamics, a particular cascade spectrum emerges. The electrostatic potential and the density spectra appear to be in good agreement with the simple theoretical prediction based on Charney-Hasegawa-Mima equation | ϕ{sup ~}{sub k} |{sup 2}∼| n{sup ~}{sub k} |{sup 2}∝k{sup −3}/(1+k{sup 2}){sup 2}, with the spectra becoming anisotropic at small scales. The results indicate that the disparate scale interactions, in particular, the refraction and shearing of larger scale eddies by the self-consistent zonal flows, dominate over local interactions, and contrary to the common wisdom, the comprehensive scaling relation is created even within the energy injection region.

  3. An ecological regime shift resulting from disrupted predator-prey interactions in Holocene Australia.

    PubMed

    Prowse, Thomas A A; Johnson, Christopher N; Bradshaw, Corey J A; Brook, Barry W

    2014-03-01

    The mass extinction events during human prehistory are striking examples of ecological regime shifts, the causes of which are still hotly debated. In Australia, human arrival approximately 50 thousand years ago was associated with the continental-scale extinction of numerous marsupial megafauna species and a permanent change in vegetation structure. An alternative stable state persisted until a second regime shift occurred during the late Holocene, when the largest two remaining marsupial carnivores, the thylacine and devil, disappeared from mainland Australia. These extinctions have been widely attributed to the human-assisted invasion of a competing predator, the dingo. In this unusual case, the simultaneous effects of human "intensification" (population growth and technological advances) and climate change (particularly increased ENSO variability) have been largely overlooked. We developed a dynamic model system capable of simulating the complex interactions between the main predators (humans, thylacines, devils, dingoes) and their marsupial prey (macropods), which we coupled with reconstructions of human population growth and climate change for late-Holocene Australia. Because the strength of important interspecific interactions cannot be estimated directly, we used detailed scenario testing and sensitivity analysis to identify robust model outcomes and investigate competing explanations for the Holocene regime shift. This approach identified human intensification as the most probable cause, while also demonstrating the potential importance of synergies with the effects of climate change. Our models indicate that the prehistoric impact of humans on Australian mammals was not limited to the late Pleistocene (i.e., the megafaunal extinctions) but extended into the late Holocene. PMID:24804453

  4. Incorporating anthropogenic effects into trophic ecology: predator-prey interactions in a human-dominated landscape.

    PubMed

    Dorresteijn, Ine; Schultner, Jannik; Nimmo, Dale G; Fischer, Joern; Hanspach, Jan; Kuemmerle, Tobias; Kehoe, Laura; Ritchie, Euan G

    2015-09-01

    Apex predators perform important functions that regulate ecosystems worldwide. However, little is known about how ecosystem regulation by predators is influenced by human activities. In particular, how important are top-down effects of predators relative to direct and indirect human-mediated bottom-up and top-down processes? Combining data on species' occurrence from camera traps and hunting records, we aimed to quantify the relative effects of top-down and bottom-up processes in shaping predator and prey distributions in a human-dominated landscape in Transylvania, Romania. By global standards this system is diverse, including apex predators (brown bear and wolf), mesopredators (red fox) and large herbivores (roe and red deer). Humans and free-ranging dogs represent additional predators in the system. Using structural equation modelling, we found that apex predators suppress lower trophic levels, especially herbivores. However, direct and indirect top-down effects of humans affected the ecosystem more strongly, influencing species at all trophic levels. Our study highlights the need to explicitly embed humans and their influences within trophic cascade theory. This will greatly expand our understanding of species interactions in human-modified landscapes, which compose the majority of the Earth's terrestrial surface.

  5. Phylogeographic Triangulation: Using Predator-Prey-Parasite Interactions to Infer Population History from Partial Genetic Information

    PubMed Central

    Barbosa, A. Márcia; Thode, Guillermo; Real, Raimundo; Feliu, Carlos; Vargas, J. Mario

    2012-01-01

    Phylogeographic studies, which infer population history and dispersal movements from intra-specific spatial genetic variation, require expensive and time-consuming analyses that are not always feasible, especially in the case of rare or endangered species. On the other hand, comparative phylogeography of species involved in close biotic interactions may show congruent patterns depending on the specificity of the relationship. Consequently, the phylogeography of a parasite that needs two hosts to complete its life cycle should reflect population history traits of both hosts. Population movements evidenced by the parasite’s phylogeography that are not reflected in the phylogeography of one of these hosts may thus be attributed to the other host. Using the wild rabbit (Oryctolagus cuniculus) and a parasitic tapeworm (Taenia pisiformis) as an example, we propose comparing the phylogeography of easily available organisms such as game species and their specific heteroxenous parasites to infer population movements of definitive host/predator species, independently of performing genetic analyses on the latter. This may be an interesting approach for indirectly studying the history of species whose phylogeography is difficult to analyse directly. PMID:23209834

  6. Incorporating anthropogenic effects into trophic ecology: predator-prey interactions in a human-dominated landscape.

    PubMed

    Dorresteijn, Ine; Schultner, Jannik; Nimmo, Dale G; Fischer, Joern; Hanspach, Jan; Kuemmerle, Tobias; Kehoe, Laura; Ritchie, Euan G

    2015-09-01

    Apex predators perform important functions that regulate ecosystems worldwide. However, little is known about how ecosystem regulation by predators is influenced by human activities. In particular, how important are top-down effects of predators relative to direct and indirect human-mediated bottom-up and top-down processes? Combining data on species' occurrence from camera traps and hunting records, we aimed to quantify the relative effects of top-down and bottom-up processes in shaping predator and prey distributions in a human-dominated landscape in Transylvania, Romania. By global standards this system is diverse, including apex predators (brown bear and wolf), mesopredators (red fox) and large herbivores (roe and red deer). Humans and free-ranging dogs represent additional predators in the system. Using structural equation modelling, we found that apex predators suppress lower trophic levels, especially herbivores. However, direct and indirect top-down effects of humans affected the ecosystem more strongly, influencing species at all trophic levels. Our study highlights the need to explicitly embed humans and their influences within trophic cascade theory. This will greatly expand our understanding of species interactions in human-modified landscapes, which compose the majority of the Earth's terrestrial surface. PMID:26336169

  7. Ultrasonic predator-prey interactions in water-convergent evolution with insects and bats in air?

    PubMed

    Wilson, Maria; Wahlberg, Magnus; Surlykke, Annemarie; Madsen, Peter Teglberg

    2013-01-01

    Toothed whales and bats have independently evolved biosonar systems to navigate and locate and catch prey. Such active sensing allows them to operate in darkness, but with the potential cost of warning prey by the emission of intense ultrasonic signals. At least six orders of nocturnal insects have independently evolved ears sensitive to ultrasound and exhibit evasive maneuvers when exposed to bat calls. Among aquatic prey on the other hand, the ability to detect and avoid ultrasound emitting predators seems to be limited to only one subfamily of Clupeidae: the Alosinae (shad and menhaden). These differences are likely rooted in the different physical properties of air and water where cuticular mechanoreceptors have been adapted to serve as ultrasound sensitive ears, whereas ultrasound detection in water have called for sensory cells mechanically connected to highly specialized gas volumes that can oscillate at high frequencies. In addition, there are most likely differences in the risk of predation between insects and fish from echolocating predators. The selection pressure among insects for evolving ultrasound sensitive ears is high, because essentially all nocturnal predation on flying insects stems from echolocating bats. In the interaction between toothed whales and their prey the selection pressure seems weaker, because toothed whales are by no means the only marine predators placing a selection pressure on their prey to evolve specific means to detect and avoid them. Toothed whales can generate extremely intense sound pressure levels, and it has been suggested that they may use these to debilitate prey. Recent experiments, however, show that neither fish with swim bladders, nor squid are debilitated by such signals. This strongly suggests that the production of high amplitude ultrasonic clicks serve the function of improving the detection range of the toothed whale biosonar system rather than debilitation of prey.

  8. Ultrasonic predator-prey interactions in water-convergent evolution with insects and bats in air?

    PubMed

    Wilson, Maria; Wahlberg, Magnus; Surlykke, Annemarie; Madsen, Peter Teglberg

    2013-01-01

    Toothed whales and bats have independently evolved biosonar systems to navigate and locate and catch prey. Such active sensing allows them to operate in darkness, but with the potential cost of warning prey by the emission of intense ultrasonic signals. At least six orders of nocturnal insects have independently evolved ears sensitive to ultrasound and exhibit evasive maneuvers when exposed to bat calls. Among aquatic prey on the other hand, the ability to detect and avoid ultrasound emitting predators seems to be limited to only one subfamily of Clupeidae: the Alosinae (shad and menhaden). These differences are likely rooted in the different physical properties of air and water where cuticular mechanoreceptors have been adapted to serve as ultrasound sensitive ears, whereas ultrasound detection in water have called for sensory cells mechanically connected to highly specialized gas volumes that can oscillate at high frequencies. In addition, there are most likely differences in the risk of predation between insects and fish from echolocating predators. The selection pressure among insects for evolving ultrasound sensitive ears is high, because essentially all nocturnal predation on flying insects stems from echolocating bats. In the interaction between toothed whales and their prey the selection pressure seems weaker, because toothed whales are by no means the only marine predators placing a selection pressure on their prey to evolve specific means to detect and avoid them. Toothed whales can generate extremely intense sound pressure levels, and it has been suggested that they may use these to debilitate prey. Recent experiments, however, show that neither fish with swim bladders, nor squid are debilitated by such signals. This strongly suggests that the production of high amplitude ultrasonic clicks serve the function of improving the detection range of the toothed whale biosonar system rather than debilitation of prey. PMID:23781206

  9. Outrun or Outmaneuver: Predator-Prey Interactions as a Model System for Integrating Biomechanical Studies in a Broader Ecological and Evolutionary Context.

    PubMed

    Moore, Talia Y; Biewener, Andrew A

    2015-12-01

    Behavioral studies performed in natural habitats provide a context for the development of hypotheses and the design of experiments relevant both to biomechanics and to evolution. In particular, predator-prey interactions are a model system for integrative study because success or failure of predation has a direct effect on fitness and drives the evolution of specialized performance in both predator and prey. Although all predators share the goal of capturing prey, and all prey share the goal of survival, the behavior of predators and prey are diverse in nature. This article presents studies of some predator-prey interactions sharing common predation strategies that reveal general principles governing the behaviors of predator and prey, even in distantly related taxa. Studies of predator-prey interactions also reveal that maximal performance observed in a laboratory setting is not necessarily the performance that determines fitness. Thus, considering locomotion in the context of predation ecology can aid in evolutionarily relevant experimental design. Classification by strategy reveals that displaying unpredictable trajectories is a relevant anti-predator behavior in response to multiple predation strategies. A predator's perception and pursuit of prey can be affected indirectly by divergent locomotion of similar animals that share an ecosystem. Variation in speed and direction of locomotion that directly increases the unpredictability of a prey's trajectory can be increased through genetic mutation that affects locomotor patterns, musculoskeletal changes that affect maneuverability, and physical interactions between an animal and the environment. By considering the interconnectedness of ecology, physical constraints, and the evolutionary history of behavior, studies in biomechanics can be designed to inform each of these fields.

  10. Effects of Aroclor 1254 and No. 2 fuel oil, singly and in combination, on predator-prey interactions in coho salmon (Oncorhynchus kisutch)

    SciTech Connect

    Folmar, L.C.; Hodgins, H.O.

    1982-07-01

    The effects of No. 2 fuel oil on predator-prey interactions of coho salmon were examined. Since aquatic organisms under natural conditions are simultaneously exposed to more than one toxicant, the effects of fuel oil plus polychlorinated biphenyls (PCBs) were also evaluated. Experimental fish were either injected with a single intraperitoneal dose of 150 g/kg Aroclor 1254, exposed to fuel oil in seawater, or injected with PCB and then exposed to fuel oil. Most of the fish subjected to the fuel oil or PCB treatment began to show behavioral modifications after 5 days of exposure. Those fish were, in general, lethargic and did not attempt to capture the prey presented to them. PCB content of the livers from fish sacrificed at the termination of the predator-prey evaluations were as follows: PCB injected, 329 +/- 98 ..mu..g/kg: oil exposed, 58 +/- 21 ..mu..g/kg; PCB injected plus oil exposed 309 +/- 83 ..mu..g/kg. Concentrations of all hydrocarbons detected by gas chromatography were significantly higher in the livers of the fish exposed to fuel oil only then in the fish which were injected with PCB seven days prior to the fuel oil exposure. The highest hydrocarbon concentrations detected were those of the naphthalenic compounds. (JMT)

  11. Predator-prey interactions between the corallivorous snail Coralliophila abbreviata and the carnivorous deltoid rock snail Thais deltoidea.

    PubMed

    Sharp, William C; Delgado, Gabriel A

    2015-10-01

    Coral reefs in the Florida Keys have become highly degraded in recent decades, prompting efforts to reestablish populations of vital reef-accreting corals to restore reef structure and ecological function. However, predation on these corals by the corallivorous gastropod Coralliophila abbreviata has been a substantial and chronic impediment to these restoration efforts. We conducted laboratory experiments to determine whether Thais deltoidea, a carnivorous gastropod that commonly occurs with C. abbreviata, is a predator of C. abbreviata. We demonstrated that T. deltoidea readily preys upon C. abbreviata and preferentially targets smaller individuals, a foraging behavior that may optimize the energy gained due to reduced handling and consumption times. If this trophic relationship proves ecologically relevant, understanding the predator-prey dynamics between these species could ultimately aid in the development of a comprehensive coral reef restoration strategy for Florida. PMID:26803883

  12. The Predator-Prey Relationship

    ERIC Educational Resources Information Center

    Mitchell, Charles W.

    1977-01-01

    Many children develop a mistaken attitude about the predator-prey relationship in the ecosystem. Fairy tales portray the predator as evil or worthless. This article attempts to clarify the role of the predator by giving numerous examples of the value of predators. (MA)

  13. Chemotactic predator-prey dynamics.

    PubMed

    Sengupta, Ankush; Kruppa, Tobias; Löwen, Hartmut

    2011-03-01

    A discrete chemotactic predator-prey model is proposed in which the prey secrets a diffusing chemical which is sensed by the predator and vice versa. Two dynamical states corresponding to catching and escaping are identified and it is shown that steady hunting is unstable. For the escape process, the predator-prey distance is diffusive for short times but exhibits a transient subdiffusive behavior which scales as a power law t¹/³ with time t and ultimately crosses over to diffusion again. This allows us to classify the motility and dynamics of various predatory microbes and phagocytes. In particular, there is a distinct region in the parameter space where they prove to be infallible predators.

  14. Predator-Prey Interactions are Context Dependent in a Grassland Plant-Grasshopper-Wolf Spider Food Chain.

    PubMed

    Laws, Angela N; Joern, Anthony

    2015-06-01

    Species interactions are often context dependent, where outcomes vary in response to one or more environmental factors. It remains unclear how abiotic conditions like temperature combine with biotic factors such as consumer density or food quality to affect resource availability or influence species interactions. Using the large grasshopper Melanoplus bivittatus (Say) and a common wolf spider [Rabidosa rabida (Walkenaer)], we conducted manipulative field experiments in tallgrass prairie to examine how spider-grasshopper interactions respond to manipulations of temperature, grasshopper density, and food quality. Grasshopper survival was density dependent, as were the effects of spider presence and food quality in context-dependent ways. In high grasshopper density treatments, predation resulted in increased grasshopper survival, likely as a result of reduced intraspecific competition in the presence of spiders. Spiders had no effect on grasshopper survival when grasshoppers were stocked at low densities. Effects of the experimental treatments were often interdependent so that effects were only observed when examined together with other treatments. The occurrence of trophic cascades was context dependent, where the effects of food quality and spider presence varied with temperature under high-density treatments. Temperature weakly affected the impact of spider presence on M. bivittatus survivorship when all treatments were considered simultaneously, but different context-dependent responses to spider presence and food quality were observed among the three temperature treatments under high-density conditions. Our results indicate that context-dependent species interactions are common and highlight the importance of understanding how key biotic and abiotic factors combine to influence species interactions. PMID:26313957

  15. Predator-Prey Interactions are Context Dependent in a Grassland Plant-Grasshopper-Wolf Spider Food Chain.

    PubMed

    Laws, Angela N; Joern, Anthony

    2015-06-01

    Species interactions are often context dependent, where outcomes vary in response to one or more environmental factors. It remains unclear how abiotic conditions like temperature combine with biotic factors such as consumer density or food quality to affect resource availability or influence species interactions. Using the large grasshopper Melanoplus bivittatus (Say) and a common wolf spider [Rabidosa rabida (Walkenaer)], we conducted manipulative field experiments in tallgrass prairie to examine how spider-grasshopper interactions respond to manipulations of temperature, grasshopper density, and food quality. Grasshopper survival was density dependent, as were the effects of spider presence and food quality in context-dependent ways. In high grasshopper density treatments, predation resulted in increased grasshopper survival, likely as a result of reduced intraspecific competition in the presence of spiders. Spiders had no effect on grasshopper survival when grasshoppers were stocked at low densities. Effects of the experimental treatments were often interdependent so that effects were only observed when examined together with other treatments. The occurrence of trophic cascades was context dependent, where the effects of food quality and spider presence varied with temperature under high-density treatments. Temperature weakly affected the impact of spider presence on M. bivittatus survivorship when all treatments were considered simultaneously, but different context-dependent responses to spider presence and food quality were observed among the three temperature treatments under high-density conditions. Our results indicate that context-dependent species interactions are common and highlight the importance of understanding how key biotic and abiotic factors combine to influence species interactions.

  16. The impact of environmental toxins on predator-prey dynamics.

    PubMed

    Huang, Qihua; Wang, Hao; Lewis, Mark A

    2015-08-01

    Predators and prey may be simultaneously exposed to environmental toxins, but one may be more susceptible than the other. To study the effects of environmental toxins on food web dynamics, we develop a toxin-dependent predator-prey model that combines both direct and indirect toxic effects on two trophic levels. The direct effects of toxins typically reduce organism abundance by increasing mortality or reducing fecundity. Such direct effects, therefore, alter both bottom-up food availability and top-down predatory ability. However, the indirect effects, when mediated through predator-prey interactions, may lead to counterintuitive effects. This study investigates how the balance of the classical predator-prey dynamics changes as a function of environmental toxin levels. While high toxin concentrations are shown to be harmful to both species, possibly leading to extirpation of both species, intermediate toxin concentrations may affect predators disproportionately through biomagnification, leading to reduced abundance of predators and increased abundance of the prey. This counterintuitive effect significantly increases biomass at the lower trophic level. Environmental toxins may also reduce population variability by preventing populations from fluctuating around a coexistence equilibrium. Finally, environmental toxins may induce bistable dynamics, in which different initial population levels produce different long-term outcomes. Since our toxin-dependent predator-prey model is general, the theory developed here not only provides a sound foundation for population or community effects of toxicity, but also could be used to help develop management strategies to preserve and restore the integrity of contaminated habitats.

  17. Applying IR Tomo PIV and 3D Organism Tracking to Study Turbulence Effects on Oceanic Predator-Prey Interactions

    NASA Astrophysics Data System (ADS)

    Adhikari, Deepak; Hallberg, Michael; Gemmell, Brad; Longmire, Ellen; Buskey, Edward

    2012-11-01

    The behavorial response of aquatic predators and prey depends strongly on the surrounding fluid motion. We present a facility and non-intrusive instrumentation system designed to quantify the motions associated with interactions between small coral reef fish (blennies) and evasive zooplankton prey (copepod) subject to various flow disturbances. A recirculating water channel facility is driven by a paddlewheel to prevent damaging the zooplankton located throughout the channel. Fluid velocity vectors surrounding both species are determined by time-resolved infrared tomographic PIV, while a circular Hough transform and PTV technique is used to track the fish eye in three-dimensional space. Simultaneously, zooplankton motions are detected and tracked using two additional high-speed cameras with IR filters. For capturing larger scales, a measurement volume of 80 x 40 x 18 mm is used with spatial resolution of 3.5 mm. For capturing smaller scales, particularly for observing flow near the mouth of the fish during feeding, the measurement volume is reduced to 20 × 18 × 18 mm with spatial resolution of 1.5 mm. Results will be presented for both freshwater and seawater species. Supported by NSF IDBR grant #0852875.

  18. Reciprocity in predator-prey interactions: exposure to defended prey and predation risk affects intermediate predator life history and morphology.

    PubMed

    Hammill, Edd; Beckerman, Andrew P

    2010-05-01

    A vast body of literature exists documenting the morphological, behavioural and life history changes that predators induce in prey. However, little attention has been paid to how these induced changes feed back and affect the predators' life history and morphology. Larvae of the phantom midge Chaoborus flavicans are intermediate predators in a food web with Daphnia pulex as the basal resource and planktivorous fish as the top predator. C. flavicans prey on D. pulex and are themselves prey for fish; as D. pulex induce morphological defences in the presence of C. flavicans this is an ideal system in which to evaluate the effects of defended prey and top predators on an intermediate consumer. We assessed the impact on C. flavicans life history and morphology of foraging on defended prey while also being exposed to the non-lethal presence of a top fish predator. We tested the basic hypothesis that the effects of defended prey will depend on the presence or absence of top predator predation risk. Feeding rate was significantly reduced and time to pupation was significantly increased by defended morph prey. Gut size, development time, fecundity, egg size and reproductive effort respond to fish chemical cues directly or significantly alter the relationship between a trait and body size. We found no significant interactions between prey morph and the non-lethal presence of a top predator, suggesting that the effects of these two biological factors were additive or singularly independent. Overall it appears that C. flavicans is able to substantially modify several aspects of its biology, and while some changes appear mere consequences of resource limitation others appear facultative in nature. PMID:19936795

  19. The invisible fish: hydrodynamic constraints for predator-prey interaction in fossil fish Saurichthys compared to recent actinopterygians.

    PubMed

    Kogan, Ilja; Pacholak, Steffen; Licht, Martin; Schneider, Jörg W; Brücker, Christoph; Brandt, Sebastian

    2015-01-01

    Recent pike-like predatory fishes attack prey animals by a quick strike out of rest or slow movement. This fast-start behaviour includes a preparatory, a propulsive and a final phase, and the latter is crucial for the success of the attack. To prevent prey from escape, predators tend to minimise the duration of the interaction and the disturbance caused to surrounding water in order to not be detected by the prey's lateral line sensory system. We compared the hydrodynamic properties of the earliest fossil representative of the pike-like morphotype, the Triassic actinopterygian Saurichthys, with several recent pike-like predators by means of computational fluid dynamics (CFD). Rainbow trout has been used as a control example of a fish with a generalist body shape. Our results show that flow disturbance produced by Saurichthys was low and similar to that of the recent forms Belone and Lepisosteus, thus indicative of an effective ambush predator. Drag coefficients are low for all these fishes, but also for trout, which is a good swimmer over longer distances but generates considerable disturbance of flow. Second-highest flow disturbance values are calculated for Esox, which compensates the large disturbance with its extremely high acceleration performance (i.e. attacks at high speeds) and the derived teleostean protrusible mouth that allows prey catching from longer distances compared to the other fishes. We show CFD modelling to be a useful tool for palaeobiological reconstruction of fossil fishes, as it allows quantification of impacts of body morphology on a hypothesised lifestyle. PMID:26603471

  20. The invisible fish: hydrodynamic constraints for predator-prey interaction in fossil fish Saurichthys compared to recent actinopterygians

    PubMed Central

    Kogan, Ilja; Pacholak, Steffen; Licht, Martin; Schneider, Jörg W.; Brücker, Christoph; Brandt, Sebastian

    2015-01-01

    ABSTRACT Recent pike-like predatory fishes attack prey animals by a quick strike out of rest or slow movement. This fast-start behaviour includes a preparatory, a propulsive and a final phase, and the latter is crucial for the success of the attack. To prevent prey from escape, predators tend to minimise the duration of the interaction and the disturbance caused to surrounding water in order to not be detected by the prey's lateral line sensory system. We compared the hydrodynamic properties of the earliest fossil representative of the pike-like morphotype, the Triassic actinopterygian Saurichthys, with several recent pike-like predators by means of computational fluid dynamics (CFD). Rainbow trout has been used as a control example of a fish with a generalist body shape. Our results show that flow disturbance produced by Saurichthys was low and similar to that of the recent forms Belone and Lepisosteus, thus indicative of an effective ambush predator. Drag coefficients are low for all these fishes, but also for trout, which is a good swimmer over longer distances but generates considerable disturbance of flow. Second-highest flow disturbance values are calculated for Esox, which compensates the large disturbance with its extremely high acceleration performance (i.e. attacks at high speeds) and the derived teleostean protrusible mouth that allows prey catching from longer distances compared to the other fishes. We show CFD modelling to be a useful tool for palaeobiological reconstruction of fossil fishes, as it allows quantification of impacts of body morphology on a hypothesised lifestyle. PMID:26603471

  1. Disentangling mite predator-prey relationships by multiplex PCR.

    PubMed

    Pérez-Sayas, Consuelo; Pina, Tatiana; Gómez-Martínez, María A; Camañes, Gemma; Ibáñez-Gual, María V; Jaques, Josep A; Hurtado, Mónica A

    2015-11-01

    Gut content analysis using molecular techniques can help elucidate predator-prey relationships in situations in which other methodologies are not feasible, such as in the case of trophic interactions between minute species such as mites. We designed species-specific primers for a mite community occurring in Spanish citrus orchards comprising two herbivores, the Tetranychidae Tetranychus urticae and Panonychus citri, and six predatory mites belonging to the Phytoseiidae family; these predatory mites are considered to be these herbivores' main biological control agents. These primers were successfully multiplexed in a single PCR to test the range of predators feeding on each of the two prey species. We estimated prey DNA detectability success over time (DS50), which depended on the predator-prey combination and ranged from 0.2 to 18 h. These values were further used to weight prey detection in field samples to disentangle the predatory role played by the most abundant predators (i.e. Euseius stipulatus and Phytoseiulus persimilis). The corrected predation value for E. stipulatus was significantly higher than for P. persimilis. However, because this 1.5-fold difference was less than that observed regarding their sevenfold difference in abundance, we conclude that P. persimilis is the most effective predator in the system; it preyed on tetranychids almost five times more frequently than E. stipulatus did. The present results demonstrate that molecular tools are appropriate to unravel predator-prey interactions in tiny species such as mites, which include important agricultural pests and their predators.

  2. Disentangling mite predator-prey relationships by multiplex PCR.

    PubMed

    Pérez-Sayas, Consuelo; Pina, Tatiana; Gómez-Martínez, María A; Camañes, Gemma; Ibáñez-Gual, María V; Jaques, Josep A; Hurtado, Mónica A

    2015-11-01

    Gut content analysis using molecular techniques can help elucidate predator-prey relationships in situations in which other methodologies are not feasible, such as in the case of trophic interactions between minute species such as mites. We designed species-specific primers for a mite community occurring in Spanish citrus orchards comprising two herbivores, the Tetranychidae Tetranychus urticae and Panonychus citri, and six predatory mites belonging to the Phytoseiidae family; these predatory mites are considered to be these herbivores' main biological control agents. These primers were successfully multiplexed in a single PCR to test the range of predators feeding on each of the two prey species. We estimated prey DNA detectability success over time (DS50), which depended on the predator-prey combination and ranged from 0.2 to 18 h. These values were further used to weight prey detection in field samples to disentangle the predatory role played by the most abundant predators (i.e. Euseius stipulatus and Phytoseiulus persimilis). The corrected predation value for E. stipulatus was significantly higher than for P. persimilis. However, because this 1.5-fold difference was less than that observed regarding their sevenfold difference in abundance, we conclude that P. persimilis is the most effective predator in the system; it preyed on tetranychids almost five times more frequently than E. stipulatus did. The present results demonstrate that molecular tools are appropriate to unravel predator-prey interactions in tiny species such as mites, which include important agricultural pests and their predators. PMID:25824504

  3. Direct identification of predator-prey dynamics in gyrokinetic simulations

    SciTech Connect

    Kobayashi, Sumire Gürcan, Özgür D; Diamond, Patrick H.

    2015-09-15

    The interaction between spontaneously formed zonal flows and small-scale turbulence in nonlinear gyrokinetic simulations is explored in a shearless closed field line geometry. It is found that when clear limit cycle oscillations prevail, the observed turbulent dynamics can be quantitatively captured by a simple Lotka-Volterra type predator-prey model. Fitting the time traces of full gyrokinetic simulations by such a reduced model allows extraction of the model coefficients. Scanning physical plasma parameters, such as collisionality and density gradient, it was observed that the effective growth rates of turbulence (i.e., the prey) remain roughly constant, in spite of the higher and varying level of primary mode linear growth rates. The effective growth rate that was extracted corresponds roughly to the zonal-flow-modified primary mode growth rate. It was also observed that the effective damping of zonal flows (i.e., the predator) in the parameter range, where clear predator-prey dynamics is observed, (i.e., near marginal stability) agrees with the collisional damping expected in these simulations. This implies that the Kelvin-Helmholtz-like instability may be negligible in this range. The results imply that when the tertiary instability plays a role, the dynamics becomes more complex than a simple Lotka-Volterra predator prey.

  4. Direct identification of predator-prey dynamics in gyrokinetic simulations

    NASA Astrophysics Data System (ADS)

    Kobayashi, Sumire; Gürcan, Özgür D.; Diamond, Patrick H.

    2015-09-01

    The interaction between spontaneously formed zonal flows and small-scale turbulence in nonlinear gyrokinetic simulations is explored in a shearless closed field line geometry. It is found that when clear limit cycle oscillations prevail, the observed turbulent dynamics can be quantitatively captured by a simple Lotka-Volterra type predator-prey model. Fitting the time traces of full gyrokinetic simulations by such a reduced model allows extraction of the model coefficients. Scanning physical plasma parameters, such as collisionality and density gradient, it was observed that the effective growth rates of turbulence (i.e., the prey) remain roughly constant, in spite of the higher and varying level of primary mode linear growth rates. The effective growth rate that was extracted corresponds roughly to the zonal-flow-modified primary mode growth rate. It was also observed that the effective damping of zonal flows (i.e., the predator) in the parameter range, where clear predator-prey dynamics is observed, (i.e., near marginal stability) agrees with the collisional damping expected in these simulations. This implies that the Kelvin-Helmholtz-like instability may be negligible in this range. The results imply that when the tertiary instability plays a role, the dynamics becomes more complex than a simple Lotka-Volterra predator prey.

  5. Predator-prey-substrate model of wastewater treatment in bioreactor system

    NASA Astrophysics Data System (ADS)

    Sadikin, Zubaidah; Salim, Normah; Allias, Razihan

    2013-04-01

    This paper analyses the mathematical model of the interaction between predator-prey and substrate that have been expressed as a system of nonlinear ordinary differential equations. This mathematical model can help to investigate the biological reaction of the interaction of predator-prey and substrate in biological wastewater treatment to improve the quality of water that flows out from the reactor. By using Monod Kinetics Growth Model, the steady state solutions have been obtained and their stability is determined as a function of the residence time.

  6. Role of seasonality on predator-prey-subsidy population dynamics.

    PubMed

    Levy, Dorian; Harrington, Heather A; Van Gorder, Robert A

    2016-05-01

    The role of seasonality on predator-prey interactions in the presence of a resource subsidy is examined using a system of non-autonomous ordinary differential equations (ODEs). The problem is motivated by the Arctic, inhabited by the ecological system of arctic foxes (predator), lemmings (prey), and seal carrion (subsidy). We construct two nonlinear, nonautonomous systems of ODEs named the Primary Model, and the n-Patch Model. The Primary Model considers spatial factors implicitly, and the n-Patch Model considers space explicitly as a "Stepping Stone" system. We establish the boundedness of the dynamics, as well as the necessity of sufficiently nutritional food for the survival of the predator. We investigate the importance of including the resource subsidy explicitly in the model, and the importance of accounting for predator mortality during migration. We find a variety of non-equilibrium dynamics for both systems, obtaining both limit cycles and chaotic oscillations. We were then able to discuss relevant implications for biologically interesting predator-prey systems including subsidy under seasonal effects. Notably, we can observe the extinction or persistence of a species when the corresponding autonomous system might predict the opposite.

  7. Dynamics of Predator-Prey Metapopulations with Allee Effects.

    PubMed

    Fan, Meng; Wu, Ping; Feng, Zhilan; Swihart, Robert K

    2016-08-01

    Allee effects increasingly are recognized as influential determinants of population dynamics, especially in disturbed landscapes. We developed a predator-prey metapopulation model to study the impact of an Allee effect on predator-prey. The model incorporates habitat destruction and predators with imperfect information about prey distribution. Criteria are established for the existence and stability of equilibria, and the possible existence of a limit cycle is discussed. Numerical bifurcation analysis of the model is carried out to examine the impact of Allee effects as well as other key processes on trophic dynamics. Inclusion of Allee effects produces a richer array of dynamics than earlier models in which it was absent. When prey interacts with generalist predators, Allee effects operate synergistically to depress prey populations. Allee effects are more likely to depress occupancy levels when destruction of habitat patches is moderate; at severe levels of destruction, Allee effects are swamped by demographic effects of habitat loss. Stronger Allee effects correspond to lower thresholds of predator colonization rates at which prey become extinct. We discuss implications of our model for conservation of rare species as well as pest management via biocontrol.

  8. Role of seasonality on predator-prey-subsidy population dynamics.

    PubMed

    Levy, Dorian; Harrington, Heather A; Van Gorder, Robert A

    2016-05-01

    The role of seasonality on predator-prey interactions in the presence of a resource subsidy is examined using a system of non-autonomous ordinary differential equations (ODEs). The problem is motivated by the Arctic, inhabited by the ecological system of arctic foxes (predator), lemmings (prey), and seal carrion (subsidy). We construct two nonlinear, nonautonomous systems of ODEs named the Primary Model, and the n-Patch Model. The Primary Model considers spatial factors implicitly, and the n-Patch Model considers space explicitly as a "Stepping Stone" system. We establish the boundedness of the dynamics, as well as the necessity of sufficiently nutritional food for the survival of the predator. We investigate the importance of including the resource subsidy explicitly in the model, and the importance of accounting for predator mortality during migration. We find a variety of non-equilibrium dynamics for both systems, obtaining both limit cycles and chaotic oscillations. We were then able to discuss relevant implications for biologically interesting predator-prey systems including subsidy under seasonal effects. Notably, we can observe the extinction or persistence of a species when the corresponding autonomous system might predict the opposite. PMID:26916622

  9. Dynamics of Predator-Prey Metapopulations with Allee Effects.

    PubMed

    Fan, Meng; Wu, Ping; Feng, Zhilan; Swihart, Robert K

    2016-08-01

    Allee effects increasingly are recognized as influential determinants of population dynamics, especially in disturbed landscapes. We developed a predator-prey metapopulation model to study the impact of an Allee effect on predator-prey. The model incorporates habitat destruction and predators with imperfect information about prey distribution. Criteria are established for the existence and stability of equilibria, and the possible existence of a limit cycle is discussed. Numerical bifurcation analysis of the model is carried out to examine the impact of Allee effects as well as other key processes on trophic dynamics. Inclusion of Allee effects produces a richer array of dynamics than earlier models in which it was absent. When prey interacts with generalist predators, Allee effects operate synergistically to depress prey populations. Allee effects are more likely to depress occupancy levels when destruction of habitat patches is moderate; at severe levels of destruction, Allee effects are swamped by demographic effects of habitat loss. Stronger Allee effects correspond to lower thresholds of predator colonization rates at which prey become extinct. We discuss implications of our model for conservation of rare species as well as pest management via biocontrol. PMID:27543248

  10. Phylogenetic signal in predator-prey body-size relationships.

    PubMed

    Naisbit, Russell E; Kehrli, Patrik; Rohr, Rudolf P; Bersier, Louis-Félix

    2011-12-01

    Body mass is a fundamental characteristic that affects metabolism, life history, and population abundance and frequently sets bounds on who eats whom in food webs. Based on a collection of topological food webs, Ulrich Brose and colleagues presented a general relationship between the body mass of predators and their prey and analyzed how mean predator-prey body-mass ratios differed among habitats and predator metabolic categories. Here we show that the general body-mass relationship conceals significant variation associated with both predator and prey phylogeny. Major-axis regressions between the log body mass of predators and prey differed among taxonomic groups. The global pattern for Kingdom Animalia had slope > 1, but phyla and classes varied, and several had slopes significantly < 1. The predator-prey body-mass ratio can therefore decrease or increase with increasing body mass, depending on the taxon considered. We also found a significant phylogenetic signal in analyses of prey body-mass range for predators and predator body-mass range for prey, with stronger signal in the former. Besides providing insights into how characteristics of trophic interactions evolve, our results emphasize the need to integrate phylogeny to improve models of community structure and dynamics or to achieve a metabolic theory of food-web ecology.

  11. Along Came a Spider: Using Live Arthropods in a Predator-Prey Activity

    ERIC Educational Resources Information Center

    Richardson, Matthew L.; Hari, Janice

    2011-01-01

    We developed a predator-prey activity with eighth-grade students in which they used wolf spiders ("Lycosa carolinensis"), house crickets ("Acheta domestica"), and abiotic factors to address how (1) adaptations in predators and prey shape their interaction and (2) abiotic factors modify the interaction between predators and prey. We tested student…

  12. Variation in predator foraging behavior changes predator-prey spatio-temporal dynamics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    1. Foraging underlies the ability of all animals to acquire essential resources and, thus, provides a critical link to understanding population dynamics. A key issue is how variation in foraging behavior affects foraging efficiency and predator-prey interactions in spatially-heterogeneous environmen...

  13. A Computer Simulation for Demonstrating and Modelling Predator-Prey Oscillations.

    ERIC Educational Resources Information Center

    Lutterschmidt, William I.; Schaefer, Jacob F.

    1997-01-01

    Discusses a computer simulation designed as an educational tool for students to observe predator-prey oscillations and experimentally investigate how changes in life histories affect predator and prey densities. Provides hands-on interaction with such theories and with mathematical models. Available to any instructor for curriculum use. (AIM)

  14. Environmental versus demographic variability in stochastic predator-prey models

    NASA Astrophysics Data System (ADS)

    Dobramysl, U.; Täuber, U. C.

    2013-10-01

    In contrast to the neutral population cycles of the deterministic mean-field Lotka-Volterra rate equations, including spatial structure and stochastic noise in models for predator-prey interactions yields complex spatio-temporal structures associated with long-lived erratic population oscillations. Environmental variability in the form of quenched spatial randomness in the predation rates results in more localized activity patches. Our previous study showed that population fluctuations in rare favorable regions in turn cause a remarkable increase in the asymptotic densities of both predators and prey. Very intriguing features are found when variable interaction rates are affixed to individual particles rather than lattice sites. Stochastic dynamics with demographic variability in conjunction with inheritable predation efficiencies generate non-trivial time evolution for the predation rate distributions, yet with overall essentially neutral optimization.

  15. Quasicycles in a spatial predator-prey model

    NASA Astrophysics Data System (ADS)

    Lugo, Carlos A.; McKane, Alan J.

    2008-11-01

    We use spatial models of simple predator-prey interactions to predict that predator and prey numbers oscillate in time and space. These oscillations are not seen in the deterministic versions of the models, but are due to stochastic fluctuations about the time-independent solutions of the deterministic equations which are amplified due to the existence of a resonance. We calculate the power spectra of the fluctuations analytically and show that they agree well with results obtained from stochastic simulations. This work extends the analysis of these quasicycles from that previously developed for well-mixed systems to spatial systems, and shows that the ideas and methods used for nonspatial models naturally generalize to the spatial case.

  16. Aerosol-cloud-precipitation system as a predator-prey problem.

    PubMed

    Koren, Ilan; Feingold, Graham

    2011-07-26

    We show that the aerosol-cloud-precipitation system exhibits characteristics of the predator-prey problem in the field of population dynamics. Both a detailed large eddy simulation of the dynamics and microphysics of a precipitating shallow boundary layer cloud system and a simpler model built upon basic physical principles, reproduce predator-prey behavior with rain acting as the predator and cloud as the prey. The aerosol is shown to modulate the predator-prey response. Steady-state solution to the proposed model shows the known existence of bistability in cloudiness. Three regimes are identified in the time-dependent solutions: (i) the weakly precipitating regime where cloud and rain coexist in a quasi steady state; (ii) the moderately drizzling regime where limit-cycle behavior in the cloud and rain fields is produced; and (iii) the heavily precipitating clouds where collapse of the boundary layer is predicted. The manifestation of predator-prey behavior in the aerosol-cloud-precipitation system is a further example of the self-organizing properties of the system and suggests that exploiting principles of population dynamics may help reduce complex aerosol-cloud-rain interactions to a more tractable problem.

  17. How the Magnitude of Prey Genetic Variation Alters Predator-Prey Eco-Evolutionary Dynamics.

    PubMed

    Cortez, Michael H

    2016-09-01

    Evolution can alter the stability and dynamics of ecological communities; for example, prey evolution can drive cyclic dynamics in predator-prey systems that are not possible in the absence of evolution. However, it is unclear how the magnitude of additive genetic variation in the evolving species mediates those effects. In this study, I explore how the magnitude of prey additive genetic variation determines what effects prey evolution has on the dynamics and stability of predator-prey systems. I use linear stability analysis to decompose the stability of a general eco-evolutionary predator-prey model into components representing the stabilities of the ecological and evolutionary subsystems as well as the interactions between those subsystems. My results show that with low genetic variation, the cyclic dynamics and stability of the system are determined by the ecological subsystem. With increased genetic variation, disruptive selection always destabilizes stable communities, stabilizing selection can stabilize or destabilize communities, and prey evolution can alter predator-prey phase lags. Stability changes occur approximately when the magnitude of genetic variation balances the (in)stabilities of the ecological and evolutionary subsystems. I discuss the connections between my stability results and prior results from the theory of adaptive dynamics.

  18. How the Magnitude of Prey Genetic Variation Alters Predator-Prey Eco-Evolutionary Dynamics.

    PubMed

    Cortez, Michael H

    2016-09-01

    Evolution can alter the stability and dynamics of ecological communities; for example, prey evolution can drive cyclic dynamics in predator-prey systems that are not possible in the absence of evolution. However, it is unclear how the magnitude of additive genetic variation in the evolving species mediates those effects. In this study, I explore how the magnitude of prey additive genetic variation determines what effects prey evolution has on the dynamics and stability of predator-prey systems. I use linear stability analysis to decompose the stability of a general eco-evolutionary predator-prey model into components representing the stabilities of the ecological and evolutionary subsystems as well as the interactions between those subsystems. My results show that with low genetic variation, the cyclic dynamics and stability of the system are determined by the ecological subsystem. With increased genetic variation, disruptive selection always destabilizes stable communities, stabilizing selection can stabilize or destabilize communities, and prey evolution can alter predator-prey phase lags. Stability changes occur approximately when the magnitude of genetic variation balances the (in)stabilities of the ecological and evolutionary subsystems. I discuss the connections between my stability results and prior results from the theory of adaptive dynamics. PMID:27501090

  19. Moorea BIOCODE barcode library as a tool for understanding predator-prey interactions: insights into the diet of common predatory coral reef fishes

    NASA Astrophysics Data System (ADS)

    Leray, M.; Boehm, J. T.; Mills, S. C.; Meyer, C. P.

    2012-06-01

    Identifying species involved in consumer-resource interactions is one of the main limitations in the construction of food webs. DNA barcoding of prey items in predator guts provides a valuable tool for characterizing trophic interactions, but the method relies on the availability of reference sequences to which prey sequences can be matched. In this study, we demonstrate that the COI sequence library of the Moorea BIOCODE project, an ecosystem-level barcode initiative, enables the identification of a large proportion of semi-digested fish, crustacean and mollusks found in the guts of three Hawkfish and two Squirrelfish species. While most prey remains lacked diagnostic morphological characters, 94% of the prey found in 67 fishes had >98% sequence similarity with BIOCODE reference sequences. Using this species-level prey identification, we demonstrate how DNA barcoding can provide insights into resource partitioning, predator feeding behaviors and the consequences of predation on ecosystem function.

  20. Combined effect of UV-irradiation and TiO₂-nanoparticles on the predator-prey interaction of gammarids and mayfly nymphs.

    PubMed

    Kalčíková, Gabriela; Englert, Dominic; Rosenfeldt, Ricki R; Seitz, Frank; Schulz, Ralf; Bundschuh, Mirco

    2014-03-01

    Although nanoparticle production and application increases continuously, their implications in species interactions, especially in combination with other environmental stressors, are rarely assessed. Therefore, the present study investigated the influence of 2 mg/L titanium dioxide nanoparticles (nTiO2; <100 nm) on the interaction between the prey Ephemerella ignita (Ephemeroptera) and the predator Gammarus fossarum (Amphipoda) over 96 h considering UV-irradiation at field relevant levels (approximately 11.4 W/m(2)) as an additional environmental factor (n = 16). At the same time, gammarid's consumption of an alternative food source, i.e. leaf discs, was assessed. All endpoints covered were not affected by nTiO2 alone, while the combination of nTiO2 and UV caused a reduction in gammarid's predation (68%), leaf consumption (60%) and body weight (22%). These effects were most likely triggered by the UV-induced formation of reactive oxygen species by nTiO2. The present study, hence, highlights the importance to cover UV-irradiation during the risk assessment of nanoparticles.

  1. Trophic organisation and predator-prey interactions among commercially exploited demersal finfishes in the coastal waters of the southeastern Arabian Sea

    NASA Astrophysics Data System (ADS)

    Abdurahiman, K. P.; Nayak, T. H.; Zacharia, P. U.; Mohamed, K. S.

    2010-05-01

    Trophic interactions in commercially exploited demersal finfishes in the southeastern Arabian Sea of India were studied to understand trophic organization with emphasis on ontogenic diet shifts within the marine food web. In total, the contents of 4716 stomachs were examined from which 78 prey items were identified. Crustaceans and fishes were the major prey groups to most of the fishes. Based on cluster analysis of predator feeding similarities and ontogenic diet shift within each predator, four major trophic guilds and many sub-guilds were identified. The first guild 'detritus feeders' included all size groups of Cynoglossus macrostomus, Pampus argenteus, Leiognathus bindus and Priacanthus hamrur. Guild two, named 'Shrimp feeders', was the largest guild identified and included all size groups of Rhynchobatus djiddensis and Nemipterus mesoprion, medium and large Nemipterus japonicus, P. hamrur and Grammoplites suppositus, small and medium Otolithes cuvieri and small Lactarius lactarius. Guild three, named 'crab and squilla feeders', consisted of few predators. The fourth trophic guild, 'piscivores', was mainly made up of larger size groups of all predators and all size groups of Pseudorhombus arsius and Carcharhinus limbatus. The mean diet breadth and mean trophic level showed strong correlation with ontogenic diet shift. The mean trophic level varied from 2.2 ± 0.1 in large L. bindus to 4.6 ± 0.2 in large Epinephelus diacanthus and the diet breadth from 1.4 ± 0.3 in medium P. argenteus to 8.3 ± 0.2 in medium N. japonicus. Overall, the present study showed that predators in the ecosystem have a strong feeding preference for the sergestid shrimp Acetes indicus, penaeid shrimps, epibenthic crabs and detritus.

  2. Wave propagation in predator-prey systems

    NASA Astrophysics Data System (ADS)

    Fu, Sheng-Chen; Tsai, Je-Chiang

    2015-12-01

    In this paper, we study a class of predator-prey systems of reaction-diffusion type. Specifically, we are interested in the dynamical behaviour for the solution with the initial distribution where the prey species is at the level of the carrying capacity, and the density of the predator species has compact support, or exponentially small tails near x=+/- ∞ . Numerical evidence suggests that this will lead to the formation of a pair of diverging waves propagating outwards from the initial zone. Motivated by this phenomenon, we establish the existence of a family of travelling waves with the minimum speed. Unlike the previous studies, we do not use the shooting argument to show this. Instead, we apply an iteration process based on Berestycki et al 2005 (Math Comput. Modelling 50 1385-93) to construct a set of super/sub-solutions. Since the underlying system does not enjoy the comparison principle, such a set of super/sub-solutions is not based on travelling waves, and in fact the super/sub-solutions depend on each other. With the aid of the set of super/sub-solutions, we can construct the solution of the truncated problem on the finite interval, which, via the limiting argument, can in turn generate the wave solution. There are several advantages to this approach. First, it can remove the technical assumptions on the diffusivities of the species in the existing literature. Second, this approach is of PDE type, and hence it can shed some light on the spreading phenomenon indicated by numerical simulation. In fact, we can compute the spreading speed of the predator species for a class of biologically acceptable initial distributions. Third, this approach might be applied to the study of waves in non-cooperative systems (i.e. a system without a comparison principle).

  3. Ecoepidemic predator-prey model with feeding satiation, prey herd behavior and abandoned infected prey.

    PubMed

    Kooi, Bob W; Venturino, Ezio

    2016-04-01

    In this paper we analyse a predator-prey model where the prey population shows group defense and the prey individuals are affected by a transmissible disease. The resulting model is of the Rosenzweig-MacArthur predator-prey type with an SI (susceptible-infected) disease in the prey. Modeling prey group defense leads to a square root dependence in the Holling type II functional for the predator-prey interaction term. The system dynamics is investigated using simulations, classical existence and asymptotic stability analysis and numerical bifurcation analysis. A number of bifurcations, such as transcritical and Hopf bifurcations which occur commonly in predator-prey systems will be found. Because of the square root interaction term there is non-uniqueness of the solution and a singularity where the prey population goes extinct in a finite time. This results in a collapse initiated by extinction of the healthy or susceptible prey and thereafter the other population(s). When also a positive attractor exists this leads to bistability similar to what is found in predator-prey models with a strong Allee effect. For the two-dimensional disease-free (i.e. the purely demographic) system the region in the parameter space where bistability occurs is marked by a global bifurcation. At this bifurcation a heteroclinic connection exists between saddle prey-only equilibrium points where a stable limit cycle together with its basin of attraction, are destructed. In a companion paper (Gimmelli et al., 2015) the same model was formulated and analysed in which the disease was not in the prey but in the predator. There we also observed this phenomenon. Here we extend its analysis using a phase portrait analysis. For the three-dimensional ecoepidemic predator-prey system where the prey is affected by the disease, also tangent bifurcations including a cusp bifurcation and a torus bifurcation of limit cycles occur. This leads to new complex dynamics. Continuation by varying one parameter

  4. Matching allele dynamics and coevolution in a minimal predator prey replicator model

    NASA Astrophysics Data System (ADS)

    Sardanyés, Josep; Solé, Ricard V.

    2008-01-01

    A minimal Lotka Volterra type predator prey model describing coevolutionary traits among entities with a strength of interaction influenced by a pair of haploid diallelic loci is studied with a deterministic time continuous model. We show a Hopf bifurcation governing the transition from evolutionary stasis to periodic Red Queen dynamics. If predator genotypes differ in their predation efficiency the more efficient genotype asymptotically achieves lower stationary concentrations.

  5. Noisy predator-prey model explains oscillation patterns in sockeye salmon data.

    PubMed

    Schmitt, Christoph K; Wildner, Christian; Drossel, Barbara

    2016-01-21

    A model of sockeye salmon population dynamics that incorporates predator-prey dynamics in the nursery lakes, salmon migration and stochastic effects is compared to Fraser River sockeye salmon spawner numbers with respect to cyclic dominance. For this comparison we use a method developed by White et al. (2014) to calculate measures for the consistency and strength of cyclic dominance in the time series using its wavelet transform. We find that the model can match the oscillation patterns found in nature, both for persistently oscillating populations and for intermittent oscillations. It matches persistently oscillating populations much better than a model that does not incorporate predator-prey interaction. Persistent oscillations are more likely to occur in the model if the growth conditions for the sockeye fry are good and the coupling to the predator is strong. PMID:26551158

  6. Predator-prey model for the self-organization of stochastic oscillators in dual populations

    NASA Astrophysics Data System (ADS)

    Moradi, Sara; Anderson, Johan; Gürcan, Ozgür D.

    2015-12-01

    A predator-prey model of dual populations with stochastic oscillators is presented. A linear cross-coupling between the two populations is introduced following the coupling between the motions of a Wilberforce pendulum in two dimensions: one in the longitudinal and the other in torsional plain. Within each population a Kuramoto-type competition between the phases is assumed. Thus, the synchronization state of the whole system is controlled by these two types of competitions. The results of the numerical simulations show that by adding the linear cross-coupling interactions predator-prey oscillations between the two populations appear, which results in self-regulation of the system by a transfer of synchrony between the two populations. The model represents several important features of the dynamical interplay between the drift wave and zonal flow turbulence in magnetically confined plasmas, and a novel interpretation of the coupled dynamics of drift wave-zonal flow turbulence using synchronization of stochastic oscillator is discussed.

  7. Noisy predator-prey model explains oscillation patterns in sockeye salmon data.

    PubMed

    Schmitt, Christoph K; Wildner, Christian; Drossel, Barbara

    2016-01-21

    A model of sockeye salmon population dynamics that incorporates predator-prey dynamics in the nursery lakes, salmon migration and stochastic effects is compared to Fraser River sockeye salmon spawner numbers with respect to cyclic dominance. For this comparison we use a method developed by White et al. (2014) to calculate measures for the consistency and strength of cyclic dominance in the time series using its wavelet transform. We find that the model can match the oscillation patterns found in nature, both for persistently oscillating populations and for intermittent oscillations. It matches persistently oscillating populations much better than a model that does not incorporate predator-prey interaction. Persistent oscillations are more likely to occur in the model if the growth conditions for the sockeye fry are good and the coupling to the predator is strong.

  8. Simulation and analysis of a model dinoflagellate predator-prey system

    NASA Astrophysics Data System (ADS)

    Mazzoleni, M. J.; Antonelli, T.; Coyne, K. J.; Rossi, L. F.

    2015-12-01

    This paper analyzes the dynamics of a model dinoflagellate predator-prey system and uses simulations to validate theoretical and experimental studies. A simple model for predator-prey interactions is derived by drawing upon analogies from chemical kinetics. This model is then modified to account for inefficiencies in predation. Simulation results are shown to closely match the model predictions. Additional simulations are then run which are based on experimental observations of predatory dinoflagellate behavior, and this study specifically investigates how the predatory dinoflagellate Karlodinium veneficum uses toxins to immobilize its prey and increase its feeding rate. These simulations account for complex dynamics that were not included in the basic models, and the results from these computational simulations closely match the experimentally observed predatory behavior of K. veneficum and reinforce the notion that predatory dinoflagellates utilize toxins to increase their feeding rate.

  9. Effects of a disease affecting a predator on the dynamics of a predator-prey system.

    PubMed

    Auger, Pierre; McHich, Rachid; Chowdhury, Tanmay; Sallet, Gauthier; Tchuente, Maurice; Chattopadhyay, Joydev

    2009-06-01

    We study the effects of a disease affecting a predator on the dynamics of a predator-prey system. We couple an SIRS model applied to the predator population, to a Lotka-Volterra model. The SIRS model describes the spread of the disease in a predator population subdivided into susceptible, infected and removed individuals. The Lotka-Volterra model describes the predator-prey interactions. We consider two time scales, a fast one for the disease and a comparatively slow one for predator-prey interactions and for predator mortality. We use the classical "aggregation method" in order to obtain a reduced equivalent model. We show that there are two possible asymptotic behaviors: either the predator population dies out and the prey tends to its carrying capacity, or the predator and prey coexist. In this latter case, the predator population tends either to a "disease-free" or to a "disease-endemic" state. Moreover, the total predator density in the disease-endemic state is greater than the predator density in the "disease-free" equilibrium (DFE).

  10. Using process algebra to develop predator-prey models of within-host parasite dynamics.

    PubMed

    McCaig, Chris; Fenton, Andy; Graham, Andrea; Shankland, Carron; Norman, Rachel

    2013-07-21

    As a first approximation of immune-mediated within-host parasite dynamics we can consider the immune response as a predator, with the parasite as its prey. In the ecological literature of predator-prey interactions there are a number of different functional responses used to describe how a predator reproduces in response to consuming prey. Until recently most of the models of the immune system that have taken a predator-prey approach have used simple mass action dynamics to capture the interaction between the immune response and the parasite. More recently Fenton and Perkins (2010) employed three of the most commonly used prey-dependent functional response terms from the ecological literature. In this paper we make use of a technique from computing science, process algebra, to develop mathematical models. The novelty of the process algebra approach is to allow stochastic models of the population (parasite and immune cells) to be developed from rules of individual cell behaviour. By using this approach in which individual cellular behaviour is captured we have derived a ratio-dependent response similar to that seen in the previous models of immune-mediated parasite dynamics, confirming that, whilst this type of term is controversial in ecological predator-prey models, it is appropriate for models of the immune system.

  11. Spatiotemporal dynamics of the epidemic transmission in a predator-prey system.

    PubMed

    Su, Min; Hui, Cang; Zhang, Yanyu; Li, Zizhen

    2008-11-01

    Epidemic transmission is one of the critical density-dependent mechanisms that affect species viability and dynamics. In a predator-prey system, epidemic transmission can strongly affect the success probability of hunting, especially for social animals. Predators, therefore, will suffer from the positive density-dependence, i.e., Allee effect, due to epidemic transmission in the population. The rate of species contacting the epidemic, especially for those endangered or invasive, has largely increased due to the habitat destruction caused by anthropogenic disturbance. Using ordinary differential equations and cellular automata, we here explored the epidemic transmission in a predator-prey system. Results show that a moderate Allee effect will destabilize the dynamics, but it is not true for the extreme Allee effect (weak or strong). The predator-prey dynamics amazingly stabilize by the extreme Allee effect. Predators suffer the most from the epidemic disease at moderate transmission probability. Counter-intuitively, habitat destruction will benefit the control of the epidemic disease. The demographic stochasticity dramatically influences the spatial distribution of the system. The spatial distribution changes from oil-bubble-like (due to local interaction) to aggregated spatially scattered points (due to local interaction and demographic stochasticity). It indicates the possibility of using human disturbance in habitat as a potential epidemic-control method in conservation. PMID:18696164

  12. Testing for predator dependence in predator-prey dynamics: a non-parametric approach.

    PubMed

    Jost, C; Ellner, S P

    2000-08-22

    The functional response is a key element in all predator-prey interactions. Although functional responses are traditionally modelled as being a function of prey density only, evidence is accumulating that predator density also has an important effect. However, much of the evidence comes from artificial experimental arenas under conditions not necessarily representative of the natural system, and neglecting the temporal dynamics of the organism (in particular the effects of prey depletion on the estimated functional response). Here we present a method that removes these limitations by reconstructing the functional response non-parametrically from predator-prey time-series data. This method is applied to data on a protozoan predator-prey interaction, and we obtain significant evidence of predator dependence in the functional response. A crucial element in this analysis is to include time-lags in the prey and predator reproduction rates, and we show that these delays improve the fit of the model significantly. Finally, we compare the non-parametrically reconstructed functional response to parametric forms, and suggest that a modified version of the Hassell-Varley predator interference model provides a simple and flexible function for theoretical investigation and applied modelling. PMID:11467423

  13. Persistence in nonautonomous predator-prey systems with infinite delays

    NASA Astrophysics Data System (ADS)

    Teng, Zhidong; Rehim, Mehbuba

    2006-12-01

    This paper studies the general nonautonomous predator-prey Lotka-Volterra systems with infinite delays. The sufficient and necessary conditions of integrable form on the permanence and persistence of species are established. A very interesting and important property of two-species predator-prey systems is discovered, that is, the permanence of species and the existence of a persistent solution are each other equivalent. Particularly, for the periodic system with delays, applying these results, the sufficient and necessary conditions on the permanence and the existence of positive periodic solutions are obtained. Some well-known results on the nondelayed periodic predator-prey Lotka-Volterra systems are strongly improved and extended to the delayed case.

  14. Predator interference and stability of predator-prey dynamics.

    PubMed

    Přibylová, Lenka; Berec, Luděk

    2015-08-01

    Predator interference, that is, a decline in the per predator consumption rate as predator density increases, is generally thought to promote predator-prey stability. Indeed, this has been demonstrated in many theoretical studies on predator-prey dynamics. In virtually all of these studies, the stabilization role is demonstrated as a weakening of the paradox of enrichment. With predator interference, stable limit cycles that appear as a result of environmental enrichment occur for higher values of the environmental carrying capacity of prey, and even a complete absence of the limit cycles can happen. Here we study predator-prey dynamics using the Rosenzweig-MacArthur-like model in which the Holling type II functional response has been replaced by a predator-dependent family which generalizes many of the commonly used descriptions of predator interference. By means of a bifurcation analysis we show that sufficiently strong predator interference may bring about another stabilizing mechanism. In particular, hysteresis combined with (dis)appearance of stable limit cycles imply abrupt increases in both the prey and predator densities and enhanced persistence and resilience of the predator-prey system. We encourage refitting the previously collected data on predator consumption rates as well as for conducting further predation experiments to see what functional response from the explored family is the most appropriate.

  15. Spatio-Temporal Oscillations in Predator-Prey Systems

    NASA Astrophysics Data System (ADS)

    Tomé, T.; de Carvalho, K. Cristina

    2005-10-01

    In recent years a particularly great effort has been made to understand the role of space given by a spatial structure and local interactions in the characterization of the dynamics of competing biological species. Irreversible stochastic lattice models have been studied to mimic predator-prey systems with Markovian local rules based in the Lotka-Volterra model. One of the problems being studied is the stability of the temporal oscillations of the population of two-species systems-whether they are synchronized. Here we study the temporal oscillations of a two-species system by considering two probabilistic cellular automata defined in regular lattices where each site can be in three states: empty, occupied by a prey, or occupied by a predator. One of them, the isotropic model, has local rules similar to those of the contact process and try to mimic the Lotka-Volterra model mechanisms. The other automaton, the anisotropic model, is based in rules that are similar to the isotropic model, but a anisotropic neighborhood is considered. This model was introduced to explore the effect of spatial anisotropy in temporal oscillations. In fact, it has been pointed out that temporally periodic states can be stable in spatial anisotropic irreversible systems whose anisotropy is exploited conveniently. We show Monte Carlo simulations performed on square lattices for both automata. Our results indicate that, in the thermodynamic limit, oscillations can occur only at a local level, even in the anisotropic model. We observe that for given sets of control parameters a spatio-temporal oscillation occurs in the system. These structures are analyzed.

  16. Predator-prey systems depend on a prey refuge.

    PubMed

    Chivers, W J; Gladstone, W; Herbert, R D; Fuller, M M

    2014-11-01

    Models of near-exclusive predator-prey systems such as that of the Canadian lynx and snowshoe hare have included factors such as a second prey species, a Holling Type II predator response and climatic or seasonal effects to reproduce sub-sets of six signature patterns in the empirical data. We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations. Our parsimonious model represents a generalised predator and prey species with a small prey refuge. The lack of the constraints of previous models, considered to be important for those models, casts doubt on the current hypothesised mechanisms of exclusive predator-prey systems. The implication for management of the lynx, a protected species, is that maintenance of an heterogeneous environment offering natural refuge areas for the hare is the most important factor for the conservation of this species.

  17. Nash Equilibria in Noncooperative Predator-Prey Games

    SciTech Connect

    Ramos, Angel Manuel Roubicek, Tomas

    2007-09-15

    A noncooperative game governed by a distributed-parameter predator-prey system is considered, assuming that two players control initial conditions for predator and prey, respectively. Existence of a Nash equilibrium is shown under the condition that the desired population profiles and the environmental carrying capacity for the prey are sufficiently small. A conceptual approximation algorithm is proposed and analyzed. Finally, numerical simulations are performed, too.

  18. Spatial Patterns of a Predator-Prey System of Leslie Type with Time Delay

    PubMed Central

    Wang, Caiyun; Chang, Lili; Liu, Huifeng

    2016-01-01

    Time delay due to maturation time, capturing time or other reasons widely exists in biological systems. In this paper, a predator-prey system of Leslie type with diffusion and time delay is studied based on mathematical analysis and numerical simulations. Conditions for both delay induced and diffusion induced Turing instability are obtained by using bifurcation theory. Furthermore, a series of numerical simulations are performed to illustrate the spatial patterns, which reveal the information of density changes of both prey and predator populations. The obtained results show that the interaction between diffusion and time delay may give rise to rich dynamics in ecosystems. PMID:26930573

  19. Revisiting the Stability of Spatially Heterogeneous Predator-Prey Systems Under Eutrophication.

    PubMed

    Farkas, J Z; Morozov, A Yu; Arashkevich, E G; Nikishina, A

    2015-10-01

    We employ partial integro-differential equations to model trophic interaction in a spatially extended heterogeneous environment. Compared to classical reaction-diffusion models, this framework allows us to more realistically describe the situation where movement of individuals occurs on a faster time scale than on the demographic (population) time scale, and we cannot determine population growth based on local density. However, most of the results reported so far for such systems have only been verified numerically and for a particular choice of model functions, which obviously casts doubts about these findings. In this paper, we analyse a class of integro-differential predator-prey models with a highly mobile predator in a heterogeneous environment, and we reveal the main factors stabilizing such systems. In particular, we explore an ecologically relevant case of interactions in a highly eutrophic environment, where the prey carrying capacity can be formally set to 'infinity'. We investigate two main scenarios: (1) the spatial gradient of the growth rate is due to abiotic factors only, and (2) the local growth rate depends on the global density distribution across the environment (e.g. due to non-local self-shading). For an arbitrary spatial gradient of the prey growth rate, we analytically investigate the possibility of the predator-prey equilibrium in such systems and we explore the conditions of stability of this equilibrium. In particular, we demonstrate that for a Holling type I (linear) functional response, the predator can stabilize the system at low prey density even for an 'unlimited' carrying capacity. We conclude that the interplay between spatial heterogeneity in the prey growth and fast displacement of the predator across the habitat works as an efficient stabilizing mechanism. These results highlight the generality of the stabilization mechanisms we find in spatially structured predator-prey ecological systems in a heterogeneous environment.

  20. Simple finite element methods for approximating predator-prey dynamics in two dimensions using MATLAB.

    PubMed

    Garvie, Marcus R; Burkardt, John; Morgan, Jeff

    2015-03-01

    We describe simple finite element schemes for approximating spatially extended predator-prey dynamics with the Holling type II functional response and logistic growth of the prey. The finite element schemes generalize 'Scheme 1' in the paper by Garvie (Bull Math Biol 69(3):931-956, 2007). We present user-friendly, open-source MATLAB code for implementing the finite element methods on arbitrary-shaped two-dimensional domains with Dirichlet, Neumann, Robin, mixed Robin-Neumann, mixed Dirichlet-Neumann, and Periodic boundary conditions. Users can download, edit, and run the codes from http://www.uoguelph.ca/~mgarvie/ . In addition to discussing the well posedness of the model equations, the results of numerical experiments are presented and demonstrate the crucial role that habitat shape, initial data, and the boundary conditions play in determining the spatiotemporal dynamics of predator-prey interactions. As most previous works on this problem have focussed on square domains with standard boundary conditions, our paper makes a significant contribution to the area.

  1. Simple finite element methods for approximating predator-prey dynamics in two dimensions using MATLAB.

    PubMed

    Garvie, Marcus R; Burkardt, John; Morgan, Jeff

    2015-03-01

    We describe simple finite element schemes for approximating spatially extended predator-prey dynamics with the Holling type II functional response and logistic growth of the prey. The finite element schemes generalize 'Scheme 1' in the paper by Garvie (Bull Math Biol 69(3):931-956, 2007). We present user-friendly, open-source MATLAB code for implementing the finite element methods on arbitrary-shaped two-dimensional domains with Dirichlet, Neumann, Robin, mixed Robin-Neumann, mixed Dirichlet-Neumann, and Periodic boundary conditions. Users can download, edit, and run the codes from http://www.uoguelph.ca/~mgarvie/ . In addition to discussing the well posedness of the model equations, the results of numerical experiments are presented and demonstrate the crucial role that habitat shape, initial data, and the boundary conditions play in determining the spatiotemporal dynamics of predator-prey interactions. As most previous works on this problem have focussed on square domains with standard boundary conditions, our paper makes a significant contribution to the area. PMID:25616741

  2. Variable prey development time suppresses predator-prey cycles and enhances stability.

    PubMed

    Cronin, James T; Reeve, John D; Xu, Dashun; Xiao, Mingqing; Stevens, Heidi N

    2016-03-01

    Although theoretical models have demonstrated that predator-prey population dynamics can depend critically on age (stage) structure and the duration and variability in development times of different life stages, experimental support for this theory is non-existent. We conducted an experiment with a host-parasitoid system to test the prediction that increased variability in the development time of the vulnerable host stage can promote interaction stability. Host-parasitoid microcosms were subjected to two treatments: Normal and High variance in the duration of the vulnerable host stage. In control and Normal-variance microcosms, hosts and parasitoids exhibited distinct population cycles. In contrast, insect abundances were 18-24% less variable in High- than Normal-variance microcosms. More significantly, periodicity in host-parasitoid population dynamics disappeared in the High-variance microcosms. Simulation models confirmed that stability in High-variance microcosms was sufficient to prevent extinction. We conclude that developmental variability is critical to predator-prey population dynamics and could be exploited in pest-management programs.

  3. Predator-prey model for the self-organization of stochastic oscillators in dual populations

    NASA Astrophysics Data System (ADS)

    Moradi, Sara; Anderson, Johan; Gürcan, Ozgur D.

    A predator-prey model of dual populations with stochastic oscillators is presented. A linear cross-coupling between the two populations is introduced that follows the coupling between the motions of a Wilberforce pendulum in two dimensions: one in the longitudinal and the other in torsional plain. Within each population a Kuramoto type competition between the phases is assumed. Thus, the synchronization state of the whole system is controlled by these two types of competitions. The results of the numerical simulations show that by adding the linear cross-coupling interactions predator-prey oscillations between the two populations appear which results in self-regulation of the system by a transfer of synchrony between the two populations. The model represents several important features of the dynamical interplay between the drift wave and zonal flow turbulence in magnetically confined plasmas, and a novel interpretation of the coupled dynamics of drift wave-zonal flow turbulence using synchronization of stochastic oscillator is discussed. Sara Moradi has benefited from a mobility grant funded by the Belgian Federal Science Policy Office and the MSCA of the European Commission (FP7-PEOPLE-COFUND-2008 nº 246540).

  4. Predator-prey model for the self-organization of stochastic oscillators in dual populations.

    PubMed

    Moradi, Sara; Anderson, Johan; Gürcan, Ozgür D

    2015-12-01

    A predator-prey model of dual populations with stochastic oscillators is presented. A linear cross-coupling between the two populations is introduced following the coupling between the motions of a Wilberforce pendulum in two dimensions: one in the longitudinal and the other in torsional plain. Within each population a Kuramoto-type competition between the phases is assumed. Thus, the synchronization state of the whole system is controlled by these two types of competitions. The results of the numerical simulations show that by adding the linear cross-coupling interactions predator-prey oscillations between the two populations appear, which results in self-regulation of the system by a transfer of synchrony between the two populations. The model represents several important features of the dynamical interplay between the drift wave and zonal flow turbulence in magnetically confined plasmas, and a novel interpretation of the coupled dynamics of drift wave-zonal flow turbulence using synchronization of stochastic oscillator is discussed. PMID:26764797

  5. Role of Alternative Food in Controlling Chaotic Dynamics in a Predator-Prey Model with Disease in the Predator

    NASA Astrophysics Data System (ADS)

    Das, Krishna Pada; Bairagi, Nandadulal; Sen, Prabir

    It is generally, but not always, accepted that alternative food plays a stabilizing role in predator-prey interaction. Parasites, on the other hand, have the ability to change both the qualitative and quantitative dynamics of its host population. In recent times, researchers are showing growing interest in formulating models that integrate both the ecological and epidemiological aspects. The present paper deals with the effect of alternative food on a predator-prey system with disease in the predator population. We show that the system, in the absence of alternative food, exhibits different dynamics viz. stable coexistence, limit cycle oscillations, period-doubling bifurcation and chaos when infection rate is gradually increased. However, when predator consumes alternative food coupled with its focal prey, the system returns to regular oscillatory state from chaotic state through period-halving bifurcations. Our study shows that alternative food may have larger impact on the community structure and may increase population persistence.

  6. Influence of edge on predator prey distribution and abundance

    NASA Astrophysics Data System (ADS)

    Ferguson, Steven H.

    2004-03-01

    I investigated the effect of spatial configuration on distribution and abundance of invertebrate trophic groups by counting soil arthropods under boxes (21 × 9.5 cm) arranged in six different patterns that varied in the amount of edge (137-305 cm). I predicted fewer individuals from the consumer trophic group (Collembola) in box groups with greater amount of edge. This prediction was based on the assumption that predators (mites, ants, spiders, centipedes) select edge during foraging and thereby reduce abundance of the less mobile consumer group under box patterns with greater edge. Consumer abundance (Collembola) was not correlated with amount of edge. Among the predator groups, mite, ant and centipede abundance related to the amount of edge of box groups. However, in contrast to predictions, abundance of these predators was negatively correlated with amount of edge in box patterns. All Collembola predators, with the exception of ants, were less clumped in distribution than Collembola. The results are inconsistent with the view that predators used box edges to predate the less mobile consumer trophic group. Alternative explanations for the spatial patterns other than predator-prey relations include (1) a negative relationship between edge and moisture, (2) a positive relationship between edge and detritus decomposition (i.e. mycelium as food for the consumer group), and (3) a negative relationship between edge and the interstices between adjacent boxes. Landscape patterns likely affect microclimate, food, and predator-prey relations and, therefore, future experimental designs need to control these factors individually to distinguish among alternative hypotheses.

  7. Short-term sublethal hypoxia affects a predator-prey system in northern Adriatic transitional waters

    NASA Astrophysics Data System (ADS)

    Munari, Cristina; Mistri, Michele

    2012-01-01

    Predation intensity depends on factors that affect both the predator's ability to locate prey as well as defensive responses by prey to approaching predators. The interactive effects of short-term hypoxia and predation were tested on the survival of two bivalves ( Tapes philippinarum and Musculista senhousia) through laboratory experiments using the crab Carcinus aestuarii as predator. We found M. senhousia to be a focal prey of C. aestuarii but, after non-lethal hypoxia, the crabs' preference for the focal prey was influenced by the presence of the other prey, T. philippinarum. We observed an environmentally-mediated, non-reciprocal indirect interaction between the two prey species, probably caused by differences in specific traits. Identifying the influence of short-term disturbance on predator-prey relationships is critical for predicting the effects of changes in water quality on trophic interactions and food web dynamics in transitional systems.

  8. Modeling symbiosis by interactions through species carrying capacities

    NASA Astrophysics Data System (ADS)

    Yukalov, V. I.; Yukalova, E. P.; Sornette, D.

    2012-08-01

    We introduce a mathematical model of symbiosis between different species by taking into account the influence of each species on the carrying capacities of the others. The modeled entities can pertain to biological and ecological societies or to social, economic and financial societies. Our model includes three basic types: symbiosis with direct mutual interactions, symbiosis with asymmetric interactions, and symbiosis without direct interactions. In all cases, we provide a complete classification of all admissible dynamical regimes. The proposed model of symbiosis turned out to be very rich, as it exhibits four qualitatively different regimes: convergence to stationary states, unbounded exponential growth, finite-time singularity, and finite-time death or extinction of species.

  9. Environmental vs. demographic variability in stochastic lattice predator-prey models

    NASA Astrophysics Data System (ADS)

    Tauber, Uwe C.

    2014-03-01

    In contrast to the neutral population cycles of the deterministic mean-field Lotka-Volterra rate equations, including spatial structure and stochastic noise in models for predator-prey interactions yields complex spatio-temporal structures associated with long-lived erratic population oscillations. Environmental variability in the form of quenched spatial randomness in the predation rates results in more localized activity patches. Population fluctuations in rare favorable regions in turn cause a remarkable increase in the asymptotic densities of both predators and prey. Very intriguing features are found when variable interaction rates are affixed to individual particles rather than lattice sites. Stochastic dynamics with demographic variability in conjunction with inheritable predation efficiencies generate non-trivial time evolution for the predation rate distributions, yet with overall essentially neutral optimization.

  10. Predator-prey pursuit-evasion games in structurally complex environments.

    PubMed

    Morice, Sylvie; Pincebourde, Sylvain; Darboux, Frédéric; Kaiser, Wilfried; Casas, Jérôme

    2013-11-01

    terms of pursuit and escape distances, and (4) reduced the likelihood of secondary pursuits, after initial escape of the prey, to nearly zero. Thus, geometry of the habitat strongly modulates the rules of pursuit-evasion in predator-prey interactions in the wild. PMID:23720527

  11. Predator-prey pursuit-evasion games in structurally complex environments.

    PubMed

    Morice, Sylvie; Pincebourde, Sylvain; Darboux, Frédéric; Kaiser, Wilfried; Casas, Jérôme

    2013-11-01

    terms of pursuit and escape distances, and (4) reduced the likelihood of secondary pursuits, after initial escape of the prey, to nearly zero. Thus, geometry of the habitat strongly modulates the rules of pursuit-evasion in predator-prey interactions in the wild.

  12. Stability and distribution of predator-prey systems: local and regional mechanisms and patterns.

    PubMed

    Lampert, Adam; Hastings, Alan

    2016-03-01

    Explaining the coexistence and distribution of species in time and space remains a fundamental challenge. While species coexistence depends on both local and regional mechanisms, it is sometimes unclear which role each mechanism takes in a given ecosystem. Consequently, it is very hard to predict the response of the ecosystem to environmental changes. Here, we develop a model to study spatial patterns of coexistence, focusing on predator-prey and host-parasite populations. We show, both theoretically and empirically, that these systems may exhibit both local and regional patterns and mechanisms of coexistence. Changes in environmental parameters, such as spatial connectivity, may lead to a transition from regional to local coexistence or it may lead directly to extinction, depending on demographic parameters. This demonstrates the importance of simultaneously analysing interacting mechanisms that act at different spatial scales to understand the response of ecosystems to environmental changes.

  13. On the Neimark-Sacker bifurcation in a discrete predator-prey system.

    PubMed

    Hone, A N W; Irle, M V; Thurura, G W

    2010-11-01

    A two-parameter family of discrete models describing a predator-prey interaction is considered, which generalizes a model discussed by Murray, and originally due to Nicholson and Bailey, consisting of two coupled nonlinear difference equations. In contrast to the original case treated by Murray, where the two populations either die out or may display unbounded growth, the general member of this family displays a somewhat wider range of behaviour. In particular, the model has a nontrivial steady state which is stable for a certain range of parameter values, which is explicitly determined, and also undergoes a Neimark-Sacker bifurcation that produces an attracting invariant curve in some areas of the parameter space and a repelling one in others.

  14. Foraging and vulnerability traits modify predator-prey body mass allometry: freshwater macroinvertebrates as a case study.

    PubMed

    Klecka, Jan; Boukal, David S

    2013-09-01

    1. Predation is often size selective, but the role of other traits of the prey and predators in their interactions is little known. This hinders our understanding of the causal links between trophic interactions and the structure of animal communities. Better knowledge of trophic traits underlying predator-prey interactions is also needed to improve models attempting to predict food web structure and dynamics from known species traits. 2. We carried out laboratory experiments with common freshwater macroinvertebrate predators (diving beetles, dragonfly and damselfly larvae and water bugs) and their prey to assess how body size and traits related to foraging (microhabitat use, feeding mode and foraging mode) and to prey vulnerability (microhabitat use, activity and escape behaviour) affect predation strength. 3. The underlying predator-prey body mass allometry characterizing mean prey size and total predation pressure was modified by feeding mode of the predators (suctorial or chewing). Suctorial predators fed upon larger prey and had ˜3 times higher mass-specific predation rate than chewing predators of the same size and may thus have stronger effect on prey abundance. 4. Strength of individual trophic links, measured as mortality of the focal prey caused by the focal predator, was determined jointly by the predator and prey body mass and their foraging and vulnerability traits. In addition to the feeding mode, interactions between prey escape behaviour (slow or fast), prey activity (sedentary or active) and predator foraging mode (searching or ambush) strongly affected prey mortality. Searching predators was ineffective in capturing fast-escape prey in comparison with the remaining predator-prey combinations, while ambush predators caused higher mortality than searching predators and the difference was larger in active prey. 5. Our results imply that the inclusion of the commonly available qualitative data on foraging traits of predators and vulnerability traits

  15. Foraging and vulnerability traits modify predator-prey body mass allometry: freshwater macroinvertebrates as a case study.

    PubMed

    Klecka, Jan; Boukal, David S

    2013-09-01

    1. Predation is often size selective, but the role of other traits of the prey and predators in their interactions is little known. This hinders our understanding of the causal links between trophic interactions and the structure of animal communities. Better knowledge of trophic traits underlying predator-prey interactions is also needed to improve models attempting to predict food web structure and dynamics from known species traits. 2. We carried out laboratory experiments with common freshwater macroinvertebrate predators (diving beetles, dragonfly and damselfly larvae and water bugs) and their prey to assess how body size and traits related to foraging (microhabitat use, feeding mode and foraging mode) and to prey vulnerability (microhabitat use, activity and escape behaviour) affect predation strength. 3. The underlying predator-prey body mass allometry characterizing mean prey size and total predation pressure was modified by feeding mode of the predators (suctorial or chewing). Suctorial predators fed upon larger prey and had ˜3 times higher mass-specific predation rate than chewing predators of the same size and may thus have stronger effect on prey abundance. 4. Strength of individual trophic links, measured as mortality of the focal prey caused by the focal predator, was determined jointly by the predator and prey body mass and their foraging and vulnerability traits. In addition to the feeding mode, interactions between prey escape behaviour (slow or fast), prey activity (sedentary or active) and predator foraging mode (searching or ambush) strongly affected prey mortality. Searching predators was ineffective in capturing fast-escape prey in comparison with the remaining predator-prey combinations, while ambush predators caused higher mortality than searching predators and the difference was larger in active prey. 5. Our results imply that the inclusion of the commonly available qualitative data on foraging traits of predators and vulnerability traits

  16. Use of Cobra Lily (Darlingtonia californica) & Drosophila for Investigating Predator-Prey Relationships.

    ERIC Educational Resources Information Center

    Pratt, Carl R.

    1994-01-01

    Describes an experiment that uses the cobra lily (Darlingtonia californica) and fruit flies (Drosophila virilis) to investigate predator-prey relationships in a classroom laboratory. Suggestions for classroom extension of this experimental system are provided. (ZWH)

  17. Predator-Prey Model for A-Ring Haloes

    NASA Astrophysics Data System (ADS)

    Esposito, L. W.; Madhusudhana, P.; Colwell, J. E.; Sremcevic, M.; Bradley, E. T.

    2013-12-01

    Cassini ISS, VIMS, UVIS spectroscopy and occultations show bright haloes around the strongest density waves. . We observe opposing effects: both small and large particles are found at the perturbed locations. Based on a predator-prey model for ring dynamics, we offer the following explanation: Cyclic velocity changes cause perturbed regions to reach higher collision speeds at some orbital phases, which preferentially removes small regolith particles; This forms a halo around the ILR; Surrounding particles diffuse back too slowly to erase the effect; Meteoritic bombardment creates fresh ice fragments at the regions of decreased regolith. Our explanation is based on the idea that moon-triggered clumping occurs at perturbed regions in Saturn's rings. Cyclic system trajectories forced around the stable point create both high velocity dispersion and large aggregates at these distances. This explanation supports the view of a triple architecture of ring particles: a broad size distribution of particles; that aggregate into temporary rubble piles; coated by a regolith of dust. The aggregate model can explain the dynamic nature of the rings and the aggregates can renew rings by shielding and recycling fresh ice.

  18. Predator prey size relationship between Pseudopleuronectes americanus and Carcinus maenas

    NASA Astrophysics Data System (ADS)

    Fairchild, E. A.; Howell, W. H.

    2000-10-01

    Young-of-year flatfish grow through a series of critical periods in which they are vulnerable to different predators, including decapod crustaceans. The purpose of this study was to determine if winter flounder, Pseudopleuronectes americanus, were vulnerable to one such decapod, the green crab, Carcinus maenas, and to determine if vulnerability differed between wild and cultured fish. To examine the predator-prey size relationship, an experiment was conducted in which six cultured and three wild winter flounder size class treatments were tested against six crab size class treatments. Flounder of all size classes were preyed on by all size classes of green crabs; however, mortality was highest when the largest crabs were matched with the smallest flounder. The number of flounder killed per day was significantly higher (31%) in winter flounder <20 mm compared to all other larger fish size classes (4-8%). Additionally, these fish were attacked at a faster rate than any other fish size class. For the 31-60 mm fish size classes tested, more wild fish (11%) were killed per day by crabs than cultured fish (6.3%). These results suggest that in a winter flounder stock enhancement program, only fish >20 mm should be released to promote post-release survival.

  19. Predator-Prey model for haloes in Saturn's A ring

    NASA Astrophysics Data System (ADS)

    Esposito, Larry W.; Bradley, E. Todd; Colwell, Joshua E.; Madhusudhanan, Prasanna; Sremcevic, Miodrag

    2013-04-01

    UVIS SOI reflectance spectra show bright 'haloes' around the locations of some of the strongest resonances in Saturn's A ring (Esposito etal 2005). UV spectra constrain the size and composition of the icy ring particles (Bradley etal 2010, 2012). The correspondence of IR, UV spectroscopy, HSP wavelet analysis indicate that we detect the same phenomenon. We investigate the Janus 2:1. 4:3, 5:3, 6:5 and Mimas 5:3 inner Lindblad resonances as well as at the Mimas 5:3 vertical resonance (bending wave location). Models of ring particle regolith evolution (Elliott and Esposito 2010) indicate the deeper regolith is made of older and purer ice. The strong resonances can cause streamline crowding (Lewis and Stewart 2005) which damps the interparticle velocity, allowing temporary clumps to grow, which in turn increase the velocity, eroding the clumps and releasing smaller particles and regolith (see the predator-prey model of Esposito etal 2012). This cyclic behavior, driven by the resonant perturbation from the moon, can yield collision velocities at particular azimuths greater than 1m/sec, sufficient to erode the aggregates (Blum 2006), exposing older, purer materials: In the perturbed region, collisions erode the regolith, removing smaller particles. The released regolith material settles in the less perturbed neighboring regions. Diffusion spreads these ring particles with smaller regolith into a 'halo'. Thus, the radial location of the strongest resonances can be where we find both large aggregates and disrupted fragments, in a balance maintained by the periodic moon forcing. If this stirring exposes older, and purer ice, the velocity threshold for eroding the aggregates can explain why only the strongest Lindblad resonances show haloes. Diffusion can explain the morphology of these haloes, although they are not well-resolved spatially by UVIS.

  20. Biocontrol in an impulsive predator-prey model.

    PubMed

    Terry, Alan J

    2014-10-01

    We study a model for biological pest control (or "biocontrol") in which a pest population is controlled by a program of periodic releases of a fixed yield of predators that prey on the pest. Releases are represented as impulsive increases in the predator population. Between releases, predator-pest dynamics evolve according to a predator-prey model with some fairly general properties: the pest population grows logistically in the absence of predation; the predator functional response is either of Beddington-DeAngelis type or Holling type II; the predator per capita birth rate is bounded above by a constant multiple of the predator functional response; and the predator per capita death rate is allowed to be decreasing in the predator functional response and increasing in the predator population, though the special case in which it is constant is permitted too. We prove that, when the predator functional response is of Beddington-DeAngelis type and the predators are not sufficiently voracious, then the biocontrol program will fail to reduce the pest population below a particular economic threshold, regardless of the frequency or yield of the releases. We prove also that our model possesses a pest-eradication solution, which is both locally and globally stable provided that predators are sufficiently voracious and that releases occur sufficiently often. We establish, curiously, that the pest-eradication solution can be locally stable whilst not being globally stable, the upshot of which is that, if we delay a biocontrol response to a new pest invasion, then this can change the outcome of the response from pest eradication to pest persistence. Finally, we state a number of specific examples for our model, and, for one of these examples, we corroborate parts of our analysis by numerical simulations.

  1. Predator-Prey Model for Haloes in Saturn's Rings

    NASA Astrophysics Data System (ADS)

    Esposito, Larry W.; Colwell, Joshua; Sremcevic, Miodrag; Madhusudhanan, Prasanna

    Particles in Saturn’s rings have a tripartite nature: (1) a broad distribution of fragments from the disruption of a previous moon that accrete into (2) transient aggregates, resembling piles of rubble, covered by a (3) regolith of smaller grains that result from collisions and meteoritic grinding. Evidence for this triple architecture of ring particles comes from a multitude of Cassini observations. In a number of ring locations (including Saturn’s F ring, the shepherded outer edges of rings A and B and at the locations of the strongest density waves) aggregation and dis-aggregation are operating now. ISS, VIMS, UVIS spectroscopy and occultations show haloes around the strongest density waves. Based on a predator-prey model for ring dynamics, we offer the following explanation: •Cyclic velocity changes cause the perturbed regions to reach higher collision speeds at some orbital phases, which preferentially removes small regolith particles; •This forms a bright halo around the ILR, if the forcing is strong enough; •Surrounding particles diffuse back too slowly to erase the effect; they diffuse away to form the halo. The most rapid time scale is for forcing/aggregate growth/disaggregation; then irreversible regolith erosion; diffusion and/or ballistic transport; and slowest, meteoritic pollution/darkening. We observe both smaller and larger particles at perturbed regions. Straw, UVIS power spectral analysis, kittens and equinox objects show the prey (mass aggregates); while the haloes’ VIMS spectral signature, correlation length and excess variance are created by the predators (velocity dispersion) in regions stirred in the rings. Moon forcing triggers aggregation to create longer-lived aggregates that protect their interiors from meteoritic darkening and recycle the ring material to maintain the current purity of the rings. It also provides a mechanism for creation of new moons at resonance locations in the Roche zone, as proposed by Charnoz etal and

  2. Do predator-prey relationships on the river bed affect fine sediment ingress?

    NASA Astrophysics Data System (ADS)

    Mathers, Kate; Rice, Stephen; Wood, Paul

    2016-04-01

    Ecosystem engineers are organisms that alter their physical environment and thereby influence the flow of resources through ecosystems. In rivers, several ecosystem engineers are also important geomorphological agents that modify fluvial sediment dynamics. By altering channel morphology and bed material characteristics, such modifications can affect the availability of habitats for other organisms, with implications for ecosystem health and wider community composition. In this way geomorphological and ecological systems are intimately interconnected. This paper focuses on one element of this intricate abiotic-biotic coupling: the interaction between fine sediment ingress into the river bed and the predator-prey relationships of aquatic organisms living on and in the river bed. Signal crayfish (Pacifastacus leniusculus) have been shown to modify fine sediment fluxes in rivers, but their effect on fine sediment ingress into riverbeds remains unclear. Many macroinvertebrate taxa have adapted avoidance strategies to avoid predation by crayfish, with one example being the freshwater shrimp (Gammarus pulex) which relies on open interstitial spaces within subsurface sediments as a refuge from crayfish predation. Fine sedimentation that fills gravelly frameworks may preclude access to those spaces, therefore leaving freshwater shrimp susceptible to predation. Ex-situ experiments were conducted which sought to examine: i) if freshwater shrimps and signal crayfish, alone and in combination, influenced fine sediment infiltration rates; and ii) whether modifications to substratum composition, specifically the introduction of fine sediment, modified predator-prey interactions. The results demonstrate that crayfish are significant geomorphic agents and that fine sediment ingress rates were significantly enhanced in their presence compared to control conditions or the presence of only freshwater shrimps. The combination of both organisms (i.e. allowing the interaction between

  3. Human activity helps prey win the predator-prey space race.

    PubMed

    Muhly, Tyler B; Semeniuk, Christina; Massolo, Alessandro; Hickman, Laura; Musiani, Marco

    2011-01-01

    Predator-prey interactions, including between large mammalian wildlife species, can be represented as a "space race", where prey try to minimize and predators maximize spatial overlap. Human activity can also influence the distribution of wildlife species. In particular, high-human disturbance can displace large carnivore predators, a trait-mediated direct effect. Predator displacement by humans could then indirectly benefit prey species by reducing predation risk, a trait-mediated indirect effect of humans that spatially decouples predators from prey. The purpose of this research was to test the hypothesis that high-human activity was displacing predators and thus indirectly creating spatial refuge for prey species, helping prey win the "space race". We measured the occurrence of eleven large mammal species (including humans and cattle) at 43 camera traps deployed on roads and trails in southwest Alberta, Canada. We tested species co-occurrence at camera sites using hierarchical cluster and nonmetric multidimensional scaling (NMS) analyses; and tested whether human activity, food and/or habitat influenced predator and prey species counts at camera sites using regression tree analysis. Cluster and NMS analysis indicated that at camera sites humans co-occurred with prey species more than predator species and predator species had relatively low co-occurrence with prey species. Regression tree analysis indicated that prey species were three times more abundant on roads and trails with >32 humans/day. However, predators were less abundant on roads and trails that exceeded 18 humans/day. Our results support the hypothesis that high-human activity displaced predators but not prey species, creating spatial refuge from predation. High-human activity on roads and trails (i.e., >18 humans/day) has the potential to interfere with predator-prey interactions via trait-mediated direct and indirect effects. We urge scientist and managers to carefully consider and quantify the

  4. Human activity helps prey win the predator-prey space race.

    PubMed

    Muhly, Tyler B; Semeniuk, Christina; Massolo, Alessandro; Hickman, Laura; Musiani, Marco

    2011-03-02

    Predator-prey interactions, including between large mammalian wildlife species, can be represented as a "space race", where prey try to minimize and predators maximize spatial overlap. Human activity can also influence the distribution of wildlife species. In particular, high-human disturbance can displace large carnivore predators, a trait-mediated direct effect. Predator displacement by humans could then indirectly benefit prey species by reducing predation risk, a trait-mediated indirect effect of humans that spatially decouples predators from prey. The purpose of this research was to test the hypothesis that high-human activity was displacing predators and thus indirectly creating spatial refuge for prey species, helping prey win the "space race". We measured the occurrence of eleven large mammal species (including humans and cattle) at 43 camera traps deployed on roads and trails in southwest Alberta, Canada. We tested species co-occurrence at camera sites using hierarchical cluster and nonmetric multidimensional scaling (NMS) analyses; and tested whether human activity, food and/or habitat influenced predator and prey species counts at camera sites using regression tree analysis. Cluster and NMS analysis indicated that at camera sites humans co-occurred with prey species more than predator species and predator species had relatively low co-occurrence with prey species. Regression tree analysis indicated that prey species were three times more abundant on roads and trails with >32 humans/day. However, predators were less abundant on roads and trails that exceeded 18 humans/day. Our results support the hypothesis that high-human activity displaced predators but not prey species, creating spatial refuge from predation. High-human activity on roads and trails (i.e., >18 humans/day) has the potential to interfere with predator-prey interactions via trait-mediated direct and indirect effects. We urge scientist and managers to carefully consider and quantify the

  5. Human Activity Helps Prey Win the Predator-Prey Space Race

    PubMed Central

    Muhly, Tyler B.; Semeniuk, Christina; Massolo, Alessandro; Hickman, Laura; Musiani, Marco

    2011-01-01

    Predator-prey interactions, including between large mammalian wildlife species, can be represented as a “space race”, where prey try to minimize and predators maximize spatial overlap. Human activity can also influence the distribution of wildlife species. In particular, high-human disturbance can displace large carnivore predators, a trait-mediated direct effect. Predator displacement by humans could then indirectly benefit prey species by reducing predation risk, a trait-mediated indirect effect of humans that spatially decouples predators from prey. The purpose of this research was to test the hypothesis that high-human activity was displacing predators and thus indirectly creating spatial refuge for prey species, helping prey win the “space race”. We measured the occurrence of eleven large mammal species (including humans and cattle) at 43 camera traps deployed on roads and trails in southwest Alberta, Canada. We tested species co-occurrence at camera sites using hierarchical cluster and nonmetric multidimensional scaling (NMS) analyses; and tested whether human activity, food and/or habitat influenced predator and prey species counts at camera sites using regression tree analysis. Cluster and NMS analysis indicated that at camera sites humans co-occurred with prey species more than predator species and predator species had relatively low co-occurrence with prey species. Regression tree analysis indicated that prey species were three times more abundant on roads and trails with >32 humans/day. However, predators were less abundant on roads and trails that exceeded 18 humans/day. Our results support the hypothesis that high-human activity displaced predators but not prey species, creating spatial refuge from predation. High-human activity on roads and trails (i.e., >18 humans/day) has the potential to interfere with predator-prey interactions via trait-mediated direct and indirect effects. We urge scientist and managers to carefully consider and quantify

  6. Predator-prey interactions, resource depression and patch revisitation

    USGS Publications Warehouse

    Erwin, R.M.

    1989-01-01

    Generalist predators may be confronted by different types of prey in different patches: sedentary and conspicuous, cryptic (with or without refugia), conspicuous and nonsocial, or conspicuous and social. I argue that, where encounter rates with prey are of most importance, patch revisitation should be a profitable tactic where prey have short 'recovery' times (conspicuous, nonsocial prey), or where anti-predator response (e.g. shoaling) may increase conspicuousness. Predictions are made for how temporal changes in prey encounter rates should affect revisit schedules and feeding rates for the 4 different prey types.

  7. Population and Evolutionary Dynamics based on Predator-Prey Relationships in a 3D Physical Simulation.

    PubMed

    Ito, Takashi; Pilat, Marcin L; Suzuki, Reiji; Arita, Takaya

    2016-01-01

    Recent studies have reported that population dynamics and evolutionary dynamics, occurring at different time scales, can be affected by each other. Our purpose is to explore the interaction between population and evolutionary dynamics using an artificial life approach based on a 3D physically simulated environment in the context of predator-prey and morphology-behavior coevolution. The morphologies and behaviors of virtual prey creatures are evolved using a genetic algorithm based on the predation interactions between predators and prey. Both population sizes are also changed, depending on the fitness. We observe two types of cyclic behaviors, corresponding to short-term and long-term dynamics. The former can be interpreted as a simple population dynamics of Lotka-Volterra type. It is shown that the latter cycle is based on the interaction between the changes in the prey strategy against predators and the long-term change in both population sizes, resulting partly from a tradeoff between their defensive success and the cost of defense.

  8. Population and Evolutionary Dynamics based on Predator-Prey Relationships in a 3D Physical Simulation.

    PubMed

    Ito, Takashi; Pilat, Marcin L; Suzuki, Reiji; Arita, Takaya

    2016-01-01

    Recent studies have reported that population dynamics and evolutionary dynamics, occurring at different time scales, can be affected by each other. Our purpose is to explore the interaction between population and evolutionary dynamics using an artificial life approach based on a 3D physically simulated environment in the context of predator-prey and morphology-behavior coevolution. The morphologies and behaviors of virtual prey creatures are evolved using a genetic algorithm based on the predation interactions between predators and prey. Both population sizes are also changed, depending on the fitness. We observe two types of cyclic behaviors, corresponding to short-term and long-term dynamics. The former can be interpreted as a simple population dynamics of Lotka-Volterra type. It is shown that the latter cycle is based on the interaction between the changes in the prey strategy against predators and the long-term change in both population sizes, resulting partly from a tradeoff between their defensive success and the cost of defense. PMID:26934093

  9. Effects of density-dependent migrations on stability of a two-patch predator-prey model.

    PubMed

    El Abdllaoui, Abderrahim; Auger, Pierre; Kooi, Bob W; Bravo de la Parra, Rafael; Mchich, Rachid

    2007-11-01

    We consider a predator-prey model in a two-patch environment and assume that migration between patches is faster than prey growth, predator mortality and predator-prey interactions. Prey (resp. predator) migration rates are considered to be predator (resp. prey) density-dependent. Prey leave a patch at a migration rate proportional to the local predator density. Predators leave a patch at a migration rate inversely proportional to local prey population density. Taking advantage of the two different time scales, we use aggregation methods to obtain a reduced (aggregated) model governing the total prey and predator densities. First, we show that for a large class of density-dependent migration rules for predators and prey there exists a unique and stable equilibrium for migration. Second, a numerical bifurcation analysis is presented. We show that bifurcation diagrams obtained from the complete and aggregated models are consistent with each other for reasonable values of the ratio between the two time scales, fast for migration and slow for local demography. Our results show that, under some particular conditions, the density dependence of migrations can generate a limit cycle. Also a co-dim two Bautin bifurcation point is observed in some range of migration parameters and this implies that bistability of an equilibrium and limit cycle is possible.

  10. Predator prey oscillations in a simple cascade model of drift wave turbulence

    SciTech Connect

    Berionni, V.; Guercan, Oe. D.

    2011-11-15

    A reduced three shell limit of a simple cascade model of drift wave turbulence, which emphasizes nonlocal interactions with a large scale mode, is considered. It is shown to describe both the well known predator prey dynamics between the drift waves and zonal flows and to reduce to the standard three wave interaction equations. Here, this model is considered as a dynamical system whose characteristics are investigated. The analytical solutions for the purely nonlinear limit are given in terms of the Jacobi elliptic functions. An approximate analytical solution involving Jacobi elliptic functions and exponential growth is computed using scale separation for the case of unstable solutions that are observed when the energy injection rate is high. The fixed points of the system are determined, and the behavior around these fixed points is studied. The system is shown to display periodic solutions corresponding to limit cycle oscillations, apparently chaotic phase space orbits, as well as unstable solutions that grow slowly while oscillating rapidly. The period doubling route to transition to chaos is examined.

  11. Flood disturbance and predator-prey effects on regional gradients in species diversity.

    PubMed

    Mori, Terutaka; Saitoh, Takashi

    2014-01-01

    The effects of both abiotic factors and biotic interactions among guilds (i.e., inter-guild effects) have been suggested to be important for understanding spatial variation in species diversity; however, compared to the abiotic effects, the processes by which the inter-guild effects are mediated have been little described. Hence, we investigated stream invertebrate assemblages on Hokkaido Island, Japan, and assessed how the processes of determining regional patterns in species diversity differed among guilds (collector-filterers, collector-gatherers/shredders, scrapers, and predators) by taking both inter-guild and abiotic effects into consideration using Bayesian networks. Collector-gatherers/shredders, collector-filterers, and predators exhibited significant regional gradients in taxonomic richness. Gradients in the former two guilds can be generated by variation in flood disturbance regardless of interactions with other guilds. The gradient in predator taxonomic richness was indirectly related to the disturbance and was directly generated by bottom-up effects through their prey (collector-gatherers/shredders and collector-filterers). We found that not only environmental factors, but also inter-guild effects may be essential for forming the regional gradient in predators, unlike those for collector-gatherers/shredders and collector-filterers. The processes underlying the regional variation in taxonomic richness of the three guilds are interpreted in terms of the "more individuals" hypothesis, facilitation, and predator-prey relationships.

  12. L-shaped prey isocline in the Gause predator-prey experiments with a prey refuge.

    PubMed

    Křivan, Vlastimil; Priyadarshi, Anupam

    2015-04-01

    Predator and prey isoclines are estimated from data on yeast-protist population dynamics (Gause et al., 1936). Regression analysis shows that the prey isocline is best fitted by an L-shaped function that has a vertical and a horizontal part. The predator isocline is vertical. This shape of isoclines corresponds with the Lotka-Volterra and the Rosenzweig-MacArthur predator-prey models that assume a prey refuge. These results further support the idea that a prey refuge changes the prey isocline of predator-prey models from a horizontal to an L-shaped curve. Such a shape of the prey isocline effectively bounds amplitude of predator-prey oscillations, thus promotes species coexistence.

  13. L-shaped prey isocline in the Gause predator-prey experiments with a prey refuge.

    PubMed

    Křivan, Vlastimil; Priyadarshi, Anupam

    2015-04-01

    Predator and prey isoclines are estimated from data on yeast-protist population dynamics (Gause et al., 1936). Regression analysis shows that the prey isocline is best fitted by an L-shaped function that has a vertical and a horizontal part. The predator isocline is vertical. This shape of isoclines corresponds with the Lotka-Volterra and the Rosenzweig-MacArthur predator-prey models that assume a prey refuge. These results further support the idea that a prey refuge changes the prey isocline of predator-prey models from a horizontal to an L-shaped curve. Such a shape of the prey isocline effectively bounds amplitude of predator-prey oscillations, thus promotes species coexistence. PMID:25644756

  14. Cooperation can emerge in prisoner's dilemma from a multi-species predator prey replicator dynamic.

    PubMed

    Paulson, Elisabeth; Griffin, Christopher

    2016-08-01

    In this paper we study a generalized variation of the replicator dynamic that involves several species and sub-species that may interact. We show how this dynamic comes about from a specific finite-population model, but also show that one must take into consideration the dynamic nature of the population sizes (and hence proportions) in order to make the model complete. We provide expressions for these population dynamics to produce a kind of multi-replicator dynamic. We then use this replicator dynamic to show that cooperation can emerge as a stable behavior when two species each play prisoner's dilemma as their intra-species game and a form of zero-sum predator prey game as their inter-species game. General necessary and sufficient conditions for cooperation to emerge as stable are provided for a number of game classes. We also showed an example using Hawk-Dove where both species can converge to stable (asymmetric) mixed strategies. PMID:27318117

  15. Rank One Strange Attractors in Periodically Kicked Predator-Prey System with Time-Delay

    NASA Astrophysics Data System (ADS)

    Yang, Wenjie; Lin, Yiping; Dai, Yunxian; Zhao, Huitao

    2016-06-01

    This paper is devoted to the study of the problem of rank one strange attractor in a periodically kicked predator-prey system with time-delay. Our discussion is based on the theory of rank one maps formulated by Wang and Young. Firstly, we develop the rank one chaotic theory to delayed systems. It is shown that strange attractors occur when the delayed system undergoes a Hopf bifurcation and encounters an external periodic force. Then we use the theory to the periodically kicked predator-prey system with delay, deriving the conditions for Hopf bifurcation and rank one chaos along with the results of numerical simulations.

  16. Permanence of a predator-prey discrete system with Holling-IV functional response and distributed delays.

    PubMed

    Zhang, X; Wu, Z; Zhou, T

    2016-01-01

    A predator-prey discrete-time model with Holling-IV functional response and distributed delays is investigated in this paper. By using the comparison theorem of the difference equation and some analysis technique, some sufficient conditions are obtained for the permanence of the discrete predator-prey system. Two examples are given to illustrate the feasibility of the obtained result.

  17. Deterministic and Stochastic Analysis of a Prey-Dependent Predator-Prey System

    ERIC Educational Resources Information Center

    Maiti, Alakes; Samanta, G. P.

    2005-01-01

    This paper reports on studies of the deterministic and stochastic behaviours of a predator-prey system with prey-dependent response function. The first part of the paper deals with the deterministic analysis of uniform boundedness, permanence, stability and bifurcation. In the second part the reproductive and mortality factors of the prey and…

  18. Predation of Notiophilus (Coleoptera: Carabidae) on Collembola as a Predator-Prey Teaching Model.

    ERIC Educational Resources Information Center

    Higgins, R. C.

    1982-01-01

    The carabid beetle (Notiophilus) preys readily on an easily-cultured collembolan in simple experimental conditions. Some features of this predator-prey system are outlined to emphasize its use in biology instruction. Experiments with another potential collembolan are described in the context of developing the method for more advanced studies.…

  19. Adaptive behaviour and multiple equilibrium states in a predator-prey model.

    PubMed

    Pimenov, Alexander; Kelly, Thomas C; Korobeinikov, Andrei; O'Callaghan, Michael J A; Rachinskii, Dmitrii

    2015-05-01

    There is evidence that multiple stable equilibrium states are possible in real-life ecological systems. Phenomenological mathematical models which exhibit such properties can be constructed rather straightforwardly. For instance, for a predator-prey system this result can be achieved through the use of non-monotonic functional response for the predator. However, while formal formulation of such a model is not a problem, the biological justification for such functional responses and models is usually inconclusive. In this note, we explore a conjecture that a multitude of equilibrium states can be caused by an adaptation of animal behaviour to changes of environmental conditions. In order to verify this hypothesis, we consider a simple predator-prey model, which is a straightforward extension of the classic Lotka-Volterra predator-prey model. In this model, we made an intuitively transparent assumption that the prey can change a mode of behaviour in response to the pressure of predation, choosing either "safe" of "risky" (or "business as usual") behaviour. In order to avoid a situation where one of the modes gives an absolute advantage, we introduce the concept of the "cost of a policy" into the model. A simple conceptual two-dimensional predator-prey model, which is minimal with this property, and is not relying on odd functional responses, higher dimensionality or behaviour change for the predator, exhibits two stable co-existing equilibrium states with basins of attraction separated by a separatrix of a saddle point.

  20. The Macaroni Lab: A Directed Inquiry Project on Predator-Prey Relationships.

    ERIC Educational Resources Information Center

    Oyler, Michelle; Rivera, John; Roffol, Melanie; Gibson, David J.; Middleton, Beth A.; Mathis, Marilyn

    1999-01-01

    Presents a directed-inquiry activity to take students one step beyond observation of how living organisms capture prey. Uses a field lab based upon predator-prey relationships to enliven the teaching of food web concepts to non-science-major freshman undergraduates. Can also be used in teaching high school biology students through college science…

  1. Bionomic Exploitation of a Ratio-Dependent Predator-Prey System

    ERIC Educational Resources Information Center

    Maiti, Alakes; Patra, Bibek; Samanta, G. P.

    2008-01-01

    The present article deals with the problem of combined harvesting of a Michaelis-Menten-type ratio-dependent predator-prey system. The problem of determining the optimal harvest policy is solved by invoking Pontryagin's Maximum Principle. Dynamic optimization of the harvest policy is studied by taking the combined harvest effort as a dynamic…

  2. Senses & Sensibility: Predator-Prey Experiments Reveal How Fish Perceive & Respond to Threats

    ERIC Educational Resources Information Center

    Jones, Jason; Holloway, Barbara; Ketcham, Elizabeth; Long, John

    2008-01-01

    The predator-prey relationship is one of the most recognizable and well-studied animal relationships. One of the more striking aspects of this relationship is the differential natural selection pressure placed on predators and their prey. This differential pressure results from differing costs of failure, the so-called life-dinner principle. If a…

  3. Adaptive behaviour and multiple equilibrium states in a predator-prey model.

    PubMed

    Pimenov, Alexander; Kelly, Thomas C; Korobeinikov, Andrei; O'Callaghan, Michael J A; Rachinskii, Dmitrii

    2015-05-01

    There is evidence that multiple stable equilibrium states are possible in real-life ecological systems. Phenomenological mathematical models which exhibit such properties can be constructed rather straightforwardly. For instance, for a predator-prey system this result can be achieved through the use of non-monotonic functional response for the predator. However, while formal formulation of such a model is not a problem, the biological justification for such functional responses and models is usually inconclusive. In this note, we explore a conjecture that a multitude of equilibrium states can be caused by an adaptation of animal behaviour to changes of environmental conditions. In order to verify this hypothesis, we consider a simple predator-prey model, which is a straightforward extension of the classic Lotka-Volterra predator-prey model. In this model, we made an intuitively transparent assumption that the prey can change a mode of behaviour in response to the pressure of predation, choosing either "safe" of "risky" (or "business as usual") behaviour. In order to avoid a situation where one of the modes gives an absolute advantage, we introduce the concept of the "cost of a policy" into the model. A simple conceptual two-dimensional predator-prey model, which is minimal with this property, and is not relying on odd functional responses, higher dimensionality or behaviour change for the predator, exhibits two stable co-existing equilibrium states with basins of attraction separated by a separatrix of a saddle point. PMID:25732186

  4. Examining predator-prey body size, trophic level and body mass across marine and terrestrial mammals.

    PubMed

    Tucker, Marlee A; Rogers, Tracey L

    2014-12-22

    Predator-prey relationships and trophic levels are indicators of community structure, and are important for monitoring ecosystem changes. Mammals colonized the marine environment on seven separate occasions, which resulted in differences in species' physiology, morphology and behaviour. It is likely that these changes have had a major effect upon predator-prey relationships and trophic position; however, the effect of environment is yet to be clarified. We compiled a dataset, based on the literature, to explore the relationship between body mass, trophic level and predator-prey ratio across terrestrial (n = 51) and marine (n = 56) mammals. We did not find the expected positive relationship between trophic level and body mass, but we did find that marine carnivores sit 1.3 trophic levels higher than terrestrial carnivores. Also, marine mammals are largely carnivorous and have significantly larger predator-prey ratios compared with their terrestrial counterparts. We propose that primary productivity, and its availability, is important for mammalian trophic structure and body size. Also, energy flow and community structure in the marine environment are influenced by differences in energy efficiency and increased food web stability. Enhancing our knowledge of feeding ecology in mammals has the potential to provide insights into the structure and functioning of marine and terrestrial communities.

  5. Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator-prey system.

    PubMed

    Kasada, Minoru; Yamamichi, Masato; Yoshida, Takehito

    2014-11-11

    Evolution on a time scale similar to ecological dynamics has been increasingly recognized for the last three decades. Selection mediated by ecological interactions can change heritable phenotypic variation (i.e., evolution), and evolution of traits, in turn, can affect ecological interactions. Hence, ecological and evolutionary dynamics can be tightly linked and important to predict future dynamics, but our understanding of eco-evolutionary dynamics is still in its infancy and there is a significant gap between theoretical predictions and empirical tests. Empirical studies have demonstrated that the presence of genetic variation can dramatically change ecological dynamics, whereas theoretical studies predict that eco-evolutionary dynamics depend on the details of the genetic variation, such as the form of a tradeoff among genotypes, which can be more important than the presence or absence of the genetic variation. Using a predator-prey (rotifer-algal) experimental system in laboratory microcosms, we studied how different forms of a tradeoff between prey defense and growth affect eco-evolutionary dynamics. Our experimental results show for the first time to our knowledge that different forms of the tradeoff produce remarkably divergent eco-evolutionary dynamics, including near fixation, near extinction, and coexistence of algal genotypes, with quantitatively different population dynamics. A mathematical model, parameterized from completely independent experiments, explains the observed dynamics. The results suggest that knowing the details of heritable trait variation and covariation within a population is essential for understanding how evolution and ecology will interact and what form of eco-evolutionary dynamics will result. PMID:25336757

  6. Effects of habitat destruction and resource supplementation in a predator-prey metapopulation model.

    PubMed

    Swihart, R K; Feng, Z; Slade, N A; Mason, D M; Gehring, T M

    2001-06-01

    We developed a mean field, metapopulation model to study the consequences of habitat destruction on a predator-prey interaction. The model complements and extends earlier work published by Bascompte and Solé (1998, J. theor. Biol.195, 383-393) in that it also permits use of alternative prey (i.e., resource supplementation) by predators. The current model is stable whenever coexistence occurs, whereas the earlier model is not stable over the entire domain of coexistence. More importantly, the current model permits an assessment of the effect of a generalist predator on the trophic interaction. Habitat destruction negatively affects the equilibrium fraction of patches occupied by predators, but the effect is most pronounced for specialists. The effect of habitat destruction on prey coexisting with predators is dependent on the ratio of extinction risk due to predation and prey colonization rate. When this ratio is less than unity, equilibrial prey occupancy of patches declines as habitat destruction increases. When the ratio exceeds one, equilibrial prey occupancy increases even as habitat destruction increases; i.e., prey "escape" from predation is facilitated by habitat loss. Resource supplementation reduces the threshold colonization rate of predators necessary for their regional persistence, and the benefit derived from resource supplementation increases in a nonlinear fashion as habitat destruction increases. We also compared the analytical results to those from a stochastic, spatially explicit simulation model. The simulation model was a discrete time analog of our analytical model, with one exception. Colonization was restricted locally in the simulation, whereas colonization was a global process in the analytical model. After correcting for differences between nominal and effective colonization rates, most of the main conclusions of the two types of models were similar. Some important differences did emerge, however, and we discuss these in relation to the

  7. Noise-controlled slow-fast oscillations in predator-prey models with the Beddington functional response

    NASA Astrophysics Data System (ADS)

    Mankin, R.; Laas, T.; Soika, E.; Ainsaar, A.

    2007-09-01

    The influence of environmental fluctuations (modeled as a multiplicative dichotomous noise) on predator-prey interaction is studied using a metapopulation model with N prey-subpopulations. Investigating the role that predator interference plays in the dynamics of such trophic systems, the Beddington functional response is considered. In case the growth rates of prey and predator are widely different, we obtain analytic results by a dynamical mean-field approximation. In some regions of the system parameters, variations of noise amplitude or correlation time can cause transitions of the mean field from a globally stable equilibrium to the stable limit cycle as well as in the opposite direction. The conditions for the occurrence of such a phenomenon are found and illustrated by phase diagrams. Implications of the results on the colored-noise-induced extinction of a predator population are also discussed.

  8. Robustness of predator-prey models for confinement regime transitions in fusion plasmas

    SciTech Connect

    Zhu, H.; Chapman, S. C.; Dendy, R. O.

    2013-04-15

    Energy transport and confinement in tokamak fusion plasmas is usually determined by the coupled nonlinear interactions of small-scale drift turbulence and larger scale coherent nonlinear structures, such as zonal flows, together with free energy sources such as temperature gradients. Zero-dimensional models, designed to embody plausible physical narratives for these interactions, can help to identify the origin of enhanced energy confinement and of transitions between confinement regimes. A prime zero-dimensional paradigm is predator-prey or Lotka-Volterra. Here, we extend a successful three-variable (temperature gradient; microturbulence level; one class of coherent structure) model in this genre [M. A. Malkov and P. H. Diamond, Phys. Plasmas 16, 012504 (2009)], by adding a fourth variable representing a second class of coherent structure. This requires a fourth coupled nonlinear ordinary differential equation. We investigate the degree of invariance of the phenomenology generated by the model of Malkov and Diamond, given this additional physics. We study and compare the long-time behaviour of the three-equation and four-equation systems, their evolution towards the final state, and their attractive fixed points and limit cycles. We explore the sensitivity of paths to attractors. It is found that, for example, an attractive fixed point of the three-equation system can become a limit cycle of the four-equation system. Addressing these questions which we together refer to as 'robustness' for convenience is particularly important for models which, as here, generate sharp transitions in the values of system variables which may replicate some key features of confinement transitions. Our results help to establish the robustness of the zero-dimensional model approach to capturing observed confinement phenomenology in tokamak fusion plasmas.

  9. Landscape heterogeneity shapes predation in a newly restored predator-prey system

    USGS Publications Warehouse

    Kauffman, M.J.; Varley, N.; Smith, D.W.; Stahler, D.R.; MacNulty, D.R.; Boyce, M.S.

    2007-01-01

    Because some native ungulates have lived without top predators for generations, it has been uncertain whether runaway predation would occur when predators are newly restored to these systems. We show that landscape features and vegetation, which influence predator detection and capture of prey, shape large-scale patterns of predation in a newly restored predator-prey system. We analysed the spatial distribution of wolf (Canis lupus) predation on elk (Cervus elaphus) on the Northern Range of Yellowstone National Park over 10 consecutive winters. The influence of wolf distribution on kill sites diminished over the course of this study, a result that was likely caused by territorial constraints on wolf distribution. In contrast, landscape factors strongly influenced kill sites, creating distinct hunting grounds and prey refugia. Elk in this newly restored predator-prey system should be able to mediate their risk of predation by movement and habitat selection across a heterogeneous risk landscape. ?? 2007 Blackwell Publishing Ltd/CNRS.

  10. Stability and delay in a three species predator-prey system

    NASA Astrophysics Data System (ADS)

    Kundu, Soumen; Maitra, Sarit

    2016-06-01

    In this article a multi-team delayed predator-prey model has been considered. There are two preys and one predator species in this model and the time delay appears for gestation of the predator. The essential mathematical features of the proposed model around the interior equilibrium point are studied in terms of local asymptotic stability by constructing a suitable Lyapunov functional and the condition for existence of Hopf-bifurcation is derived. By the assumption that the prey teams may help each other the effect of the rate of cooperation on the stability of the predator-prey model has been observed. Numerically a critical value for the delay parameter is obtained as a condition for Hopf-bifurcation.

  11. Landscape heterogeneity shapes predation in a newly restored predator-prey system.

    PubMed

    Kauffman, Matthew J; Varley, Nathan; Smith, Douglas W; Stahler, Daniel R; MacNulty, Daniel R; Boyce, Mark S

    2007-08-01

    Because some native ungulates have lived without top predators for generations, it has been uncertain whether runaway predation would occur when predators are newly restored to these systems. We show that landscape features and vegetation, which influence predator detection and capture of prey, shape large-scale patterns of predation in a newly restored predator-prey system. We analysed the spatial distribution of wolf (Canis lupus) predation on elk (Cervus elaphus) on the Northern Range of Yellowstone National Park over 10 consecutive winters. The influence of wolf distribution on kill sites diminished over the course of this study, a result that was likely caused by territorial constraints on wolf distribution. In contrast, landscape factors strongly influenced kill sites, creating distinct hunting grounds and prey refugia. Elk in this newly restored predator-prey system should be able to mediate their risk of predation by movement and habitat selection across a heterogeneous risk landscape. PMID:17594424

  12. Stability of a Beddington-DeAngelis type predator-prey model with trichotomous noises

    NASA Astrophysics Data System (ADS)

    Jin, Yanfei; Niu, Siyong

    2016-06-01

    The stability analysis of a Beddington-DeAngelis (B-D) type predator-prey model driven by symmetric trichotomous noises is presented in this paper. Using the Shapiro-Loginov formula, the first-order and second-order solution moments of the system are obtained. The moment stability conditions of the B-D predator-prey model are given by using Routh-Hurwitz criterion. It is found that the stabilities of the first-order and second-order solution moments depend on the noise intensities and correlation time of noise. The first-order and second-order moments are stable when the correlation time of noise is increased. That is, the trichotomous noise plays a constructive role in stabilizing the solution moment with regard to Gaussian white noise. Finally, some numerical results are performed to support the theoretical analyses.

  13. Asymptotic behavior of a stochastic non-autonomous predator-prey model with impulsive perturbations

    NASA Astrophysics Data System (ADS)

    Wu, Ruihua; Zou, Xiaoling; Wang, Ke

    2015-03-01

    This paper is concerned with a stochastic non-autonomous Lotka-Volterra predator-prey model with impulsive effects. The asymptotic properties are examined. Sufficient conditions for persistence and extinction are obtained, our results demonstrate that the impulse has important effects on the persistence and extinction of the species. We also show that the solution is stochastically ultimate bounded under some conditions. Finally, several simulation figures are introduced to confirm our main results.

  14. Stability and Bifurcation in a State-Dependent Delayed Predator-Prey System

    NASA Astrophysics Data System (ADS)

    Hou, Aiyu; Guo, Shangjiang

    In this paper, we consider a class of predator-prey equations with state-dependent delayed feedback. Firstly, we investigate the local stability of the positive equilibrium and the existence of the Hopf bifurcation. Then we use perturbation methods to determine the sub/supercriticality of Hopf bifurcation and hence the stability of Hopf bifurcating periodic solutions. Finally, numerical simulations supporting our theoretical results are also provided.

  15. Optimal Harvesting in an Age-Structured Predator-Prey Model

    SciTech Connect

    Fister, K. Renee Lenhart, Suzanne

    2006-06-15

    We investigate optimal harvesting control in a predator-prey model in which the prey population is represented by a first-order partial differential equation with age-structure and the predator population is represented by an ordinary differential equation in time. The controls are the proportions of the populations to be harvested, and the objective functional represents the profit from harvesting. The existence and uniqueness of the optimal control pair are established.

  16. Equilibrium points, stability and numerical solutions of fractional-order predator-prey and rabies models

    NASA Astrophysics Data System (ADS)

    Ahmed, E.; El-Sayed, A. M. A.; El-Saka, H. A. A.

    2007-01-01

    In this paper we are concerned with the fractional-order predator-prey model and the fractional-order rabies model. Existence and uniqueness of solutions are proved. The stability of equilibrium points are studied. Numerical solutions of these models are given. An example is given where the equilibrium point is a centre for the integer order system but locally asymptotically stable for its fractional-order counterpart.

  17. a Predator-Prey Model Based on the Fully Parallel Cellular Automata

    NASA Astrophysics Data System (ADS)

    He, Mingfeng; Ruan, Hongbo; Yu, Changliang

    We presented a predator-prey lattice model containing moveable wolves and sheep, which are characterized by Penna double bit strings. Sexual reproduction and child-care strategies are considered. To implement this model in an efficient way, we build a fully parallel Cellular Automata based on a new definition of the neighborhood. We show the roles played by the initial densities of the populations, the mutation rate and the linear size of the lattice in the evolution of this model.

  18. Restructuring fundamental predator-prey models by recognising prey-dependent conversion efficiency and mortality rates.

    PubMed

    Li, Jiqiu; Montagnes, David J S

    2015-05-01

    Incorporating protozoa into population models (from simple predator-prey explorations to complex food web simulations) is of conceptual, ecological, and economic importance. From theoretical and empirical perspectives, we expose unappreciated complexity in the traditional predator-prey model structure and provide a parsimonious solution, especially for protistologists. We focus on how prey abundance alters two key components of models: predator conversion efficiency (e, the proportion of prey converted to predator, before mortality loss) and predator mortality (δ, the portion of the population lost though death). Using a well-established model system (Paramecium and Didinium), we collect data to parameterize a range of existing and novel population models that differ in the functional forms of e and δ. We then compare model simulations to an empirically obtained time-series of predator-prey population dynamics. The analysis indicates that prey-dependent e and δ should be considered when structuring population models and that both prey and predator biomass also vary with prey abundance. Both of these impact the ability of the model to predict population dynamics and, therefore, should be included in theoretical model evaluations and assessment of ecosystem dynamics associated with biomass flux. PMID:25819465

  19. Restructuring fundamental predator-prey models by recognising prey-dependent conversion efficiency and mortality rates.

    PubMed

    Li, Jiqiu; Montagnes, David J S

    2015-05-01

    Incorporating protozoa into population models (from simple predator-prey explorations to complex food web simulations) is of conceptual, ecological, and economic importance. From theoretical and empirical perspectives, we expose unappreciated complexity in the traditional predator-prey model structure and provide a parsimonious solution, especially for protistologists. We focus on how prey abundance alters two key components of models: predator conversion efficiency (e, the proportion of prey converted to predator, before mortality loss) and predator mortality (δ, the portion of the population lost though death). Using a well-established model system (Paramecium and Didinium), we collect data to parameterize a range of existing and novel population models that differ in the functional forms of e and δ. We then compare model simulations to an empirically obtained time-series of predator-prey population dynamics. The analysis indicates that prey-dependent e and δ should be considered when structuring population models and that both prey and predator biomass also vary with prey abundance. Both of these impact the ability of the model to predict population dynamics and, therefore, should be included in theoretical model evaluations and assessment of ecosystem dynamics associated with biomass flux.

  20. Effects of the heterogeneous landscape on a predator-prey system

    NASA Astrophysics Data System (ADS)

    Lee, Sang-Hee

    2010-01-01

    In order to understand how a heterogeneous landscape affects a predator-prey system, a spatially explicit lattice model consisting of predators, prey, grass, and landscape was constructed. The predators and preys randomly move on the lattice space and the grass grows in its neighboring site according to its growth probability. When predators and preys meet at the same site at the same time, a number of prey, equal to the number of predators are eaten. This rule was also applied to the relationship between the prey and grass. The predator (prey) could give birth to an offspring when it ate prey (grass), with a birth probability. When a predator or prey animal was initially introduced, or newly born, its health state was set at a given high value. This health state decreased by one with every time step. When the state of an animal decreased to less than zero, the animal died and was removed from the system. The heterogeneous landscape was characterized by parameter H, which controlled the heterogeneity according to the neutral model. The simulation results showed that H positively or negatively affected a predator’s survival, while its effect on prey and grass was less pronounced. The results can be understood by the disturbance of the balance between the prey and predator densities in the areas where the animals aggregated.

  1. On the relationship between cyclic and hierarchical three-species predator-prey systems and the two-species Lotka-Volterra model

    NASA Astrophysics Data System (ADS)

    He, Q.; Täuber, U. C.; Zia, R. K. P.

    2012-04-01

    Stochastic spatial predator-prey competition models represent paradigmatic systems to understand the emergence of biodiversity and the stability of ecosystems. We aim to clarify the relationship and connections between interacting three-species models and the classic two-species Lotka-Volterra (LV) model that entails predator-prey coexistence with long-lived population oscillations. To this end, we utilize mean-field theory and Monte Carlo simulations on two-dimensional square lattices to explore the temporal evolution characteristics of two different interacting three-species predator-prey systems, namely: (1) a cyclic rock-paper-scissors (RPS) model with conserved total particle number but strongly asymmetric reaction rates that lets the system evolve towards one "corner" of configuration space; (2) a hierarchical "food chain" where an additional intermediate species is inserted between the predator and prey in the LV model. For the asymmetric cyclic model variant (1), we demonstrate that the evolutionary properties of both minority species in the (quasi-)steady state of this stochastic spatial three-species "corner" RPS model are well approximated by the two-species LV system, with its emerging characteristic features of localized population clustering, persistent oscillatory dynamics, correlated spatio-temporal patterns, and fitness enhancement through quenched spatial disorder in the predation rates. In contrast, we could not identify any regime where the hierarchical three-species model (2) would reduce to the two-species LV system. In the presence of pair exchange processes, the system remains essentially well-mixed, and we generally find the Monte Carlo simulation results for the spatially extended hierarchical model (2) to be consistent with the predictions from the corresponding mean-field rate equations. If spreading occurs only through nearest-neighbor hopping, small population clusters emerge; yet the requirement of an intermediate species cluster

  2. Bacterial predator-prey dynamics in microscale patchy landscapes.

    PubMed

    Hol, Felix J H; Rotem, Or; Jurkevitch, Edouard; Dekker, Cees; Koster, Daniel A

    2016-02-10

    Soil is a microenvironment with a fragmented (patchy) spatial structure in which many bacterial species interact. Here, we explore the interaction between the predatory bacterium Bdellovibrio bacteriovorus and its prey Escherichia coli in microfabricated landscapes. We ask how fragmentation influences the prey dynamics at the microscale and compare two landscape geometries: a patchy landscape and a continuous landscape. By following the dynamics of prey populations with high spatial and temporal resolution for many generations, we found that the variation in predation rates was twice as large in the patchy landscape and the dynamics was correlated over shorter length scales. We also found that while the prey population in the continuous landscape was almost entirely driven to extinction, a significant part of the prey population in the fragmented landscape persisted over time. We observed significant surface-associated growth, especially in the fragmented landscape and we surmise that this sub-population is more resistant to predation. Our results thus show that microscale fragmentation can significantly influence bacterial interactions.

  3. Model of naticid gastropod predator-prey coevolution

    SciTech Connect

    DeAngelis, D.L.; Kitchell, J.A.; Post, W.M.; Travis, C.C.

    1982-01-01

    Size change over evolutionary time between two interacting species, a predatory naticid gastropod and its bivalve prey, is analyzed. We show that two simultaneous, maximizing algorithms (the predator maximizes energy intake; the prey maximizes reproductive output) result in an endogenous, coevolutionary size increase, to a stable attracting point. In particular, we show that selection for delayed reproduction in a predatorpreay system that is highly size-selective due to the predatory strategy of cost-benefit prey selection, coupled with the relative allometries of cost (prey shell thickness) and benefit (prey biomass) with prey size, and the highly size-dependent probability of successful predation, lead to a coevolutionary size increase for both predator and prey, up to a limit condition dictated by predatory respiration costs. In the absence of predation, the prey species attains a smaller size than in the presence of predation. Addition of the predator results in a delay in the timing of reproduction by the prey, thereby facilitating a size response.

  4. Antagonistic evolution in an aposematic predator-prey signaling system.

    PubMed

    Speed, Michael P; Franks, Daniel W

    2014-10-01

    Warning signals within species, such as the bright colors of chemically defended animals, are usually considered mutualistic, monomorphic traits. Such a view is however increasingly at odds with the growing empirical literature, showing nontrivial levels of signal variation within prey populations. Key to understanding this variation, we argue, could be a recognition that toxicity levels frequently vary within populations because of environmental heterogeneity. Inequalities in defense may undermine mutualistic monomorphic signaling, causing evolutionary antagonism between loci that determine appearance of less well-defended and better defended prey forms within species. In this article, we apply a stochastic model of evolved phenotypic plasticity to the evolution of prey signals. We show that when toxicity levels vary, then antagonistic interactions can lead to evolutionary conflict between alleles at different signaling loci, causing signal evolution, "red queen-like" evolutionary chase, and one or more forms of signaling equilibria. A key prediction is that variation in the way that predators use information about toxicity levels in their attack behaviors profoundly affects the evolutionary characteristics of the prey signaling systems. Environmental variation is known to cause variation in many qualities that organisms signal; our approach may therefore have application to other signaling systems.

  5. Switching from simple to complex dynamics in a predator-prey-parasite model: An interplay between infection rate and incubation delay.

    PubMed

    Bairagi, N; Adak, D

    2016-07-01

    Parasites play a significant role in trophic interactions and can regulate both predator and prey populations. Mathematical models might be of great use in predicting different system dynamics because models have the potential to predict the system response due to different changes in system parameters. In this paper, we study a predator-prey-parasite (PPP) system where prey population is infected by some micro parasites and predator-prey interaction occurs following Leslie-Gower model with type II response function. Infection spreads following SI type epidemic model with standard incidence rate. The infection process is not instantaneous but mediated by a fixed incubation delay. We study the stability and instability of the endemic equilibrium point of the delay-induced PPP system with respect to two parameters, viz., the force of infection and the length of incubation delay under two cases: (i) the corresponding non-delayed system is stable and (ii) the corresponding non-delayed system is unstable. In the first case, the system populations coexist in stable state for all values of delay if the force of infection is low; or show oscillatory behavior when the force of infection is intermediate and the length of delay crosses some critical value. The system, however, exhibits very complicated dynamics if the force of infection is high, where the system is unstable in absence of delay. In this last case, the system shows oscillatory, stable or chaotic behavior depending on the length of delay.

  6. Modelling the dynamics of traits involved in fighting-predators-prey system.

    PubMed

    Kooi, B W

    2015-12-01

    We study the dynamics of a predator-prey system where predators fight for captured prey besides searching for and handling (and digestion) of the prey. Fighting for prey is modelled by a continuous time hawk-dove game dynamics where the gain depends on the amount of disputed prey while the costs for fighting is constant per fighting event. The strategy of the predator-population is quantified by a trait being the proportion of the number of predator-individuals playing hawk tactics. The dynamics of the trait is described by two models of adaptation: the replicator dynamics (RD) and the adaptive dynamics (AD). In the RD-approach a variant individual with an adapted trait value changes the population's strategy, and consequently its trait value, only when its payoff is larger than the population average. In the AD-approach successful replacement of the resident population after invasion of a rare variant population with an adapted trait value is a step in a sequence changing the population's strategy, and hence its trait value. The main aim is to compare the consequences of the two adaptation models. In an equilibrium predator-prey system this will lead to convergence to a neutral singular strategy, while in the oscillatory system to a continuous singular strategy where in this endpoint the resident population is not invasible by any variant population. In equilibrium (low prey carrying capacity) RD and AD-approach give the same results, however not always in a periodically oscillating system (high prey carrying-capacity) where the trait is density-dependent. For low costs the predator population is monomorphic (only hawks) while for high costs dimorphic (hawks and doves). These results illustrate that intra-specific trait dynamics matters in predator-prey dynamics. PMID:25773467

  7. The influence of predator--prey population dynamics on the long-term evolution of food web structure.

    PubMed

    Drossel, B; Higgs, P G; McKane, A J

    2001-01-01

    We develop a set of equations to describe the population dynamics of many interacting species in food webs. Predator-prey interactions are nonlinear, and are based on ratio-dependent functional responses. The equations account for competition for resources between members of the same species, and between members of different species. Predators divide their total hunting/foraging effort between the available prey species according to an evolutionarily stable strategy (ESS). The ESS foraging behaviour does not correspond to the predictions of optimal foraging theory. We use the population dynamics equations in simulations of the Webworld model of evolving ecosystems. New species are added to an existing food web due to speciation events, whilst species become extinct due to coevolution and competition. We study the dynamics of species-diversity in Webworld on a macro-evolutionary time-scale. Coevolutionary interactions are strong enough to cause continuous overturn of species, in contrast to our previous Webworld simulations with simpler population dynamics. Although there are significant fluctuations in species diversity because of speciation and extinction, very large-scale extinction avalanches appear to be absent from the dynamics, and we find no evidence for self-organized criticality.

  8. Stationary distribution and periodic solutions for stochastic Holling-Leslie predator-prey systems

    NASA Astrophysics Data System (ADS)

    Jiang, Daqing; Zuo, Wenjie; Hayat, Tasawar; Alsaedi, Ahmed

    2016-10-01

    The stochastic autonomous and periodic predator-prey systems with Holling and Leslie type functional response are investigated. For the autonomous system, we prove that there exists a unique stationary distribution, which is ergodic by constructing a suitable Lyapunov function under relatively small white noise. The result shows that, stationary distribution doesn't rely on the existence and the stability of the positive equilibrium in the undisturbed system. Furthermore, for the corresponding non-autonomous system, we show that there exists a positive periodic Markov process under relatively weaker condition. Finally, numerical simulations illustrate our theoretical results.

  9. Dynamics of a Diffusive Predator-Prey Model with General Nonlinear Functional Response

    PubMed Central

    2014-01-01

    We study a diffusive predator-prey model with nonconstant death rate and general nonlinear functional response. Firstly, stability analysis of the equilibrium for reduced ODE system is discussed. Secondly, sufficient and necessary conditions which guarantee the predator and the prey species to be permanent are obtained. Furthermore, sufficient conditions for the global asymptotical stability of the unique positive equilibrium of the system are derived by using the method of Lyapunov function. Finally, we show that there are no nontrivial steady state solutions for certain parameter configuration. PMID:24688422

  10. Qualitative Analysis of a Predator-Prey Model with Crowley-Martin Functional Response

    NASA Astrophysics Data System (ADS)

    Dong, Yaying; Zhang, Shunli; Li, Shanbing; Li, Yanling

    In this paper, we are concerned with positive solutions of a predator-prey model with Crowley-Martin functional response under homogeneous Dirichlet boundary conditions. First, we prove the existence and reveal the structure of the positive solutions by using bifurcation theory. Then, we investigate the uniqueness and stability of the positive solutions for a large key parameter. In addition, we derive some sufficient conditions for the uniqueness of the positive solutions by using some specific inequalities. Moreover, we discuss the extinction and persistence results of time-dependent positive solutions to the system. Finally, we present some numerical simulations to supplement the analytic results in one dimension.

  11. Local Bifurcations and Optimal Theory in a Delayed Predator-Prey Model with Threshold Prey Harvesting

    NASA Astrophysics Data System (ADS)

    Tankam, Israel; Tchinda Mouofo, Plaire; Mendy, Abdoulaye; Lam, Mountaga; Tewa, Jean Jules; Bowong, Samuel

    2015-06-01

    We investigate the effects of time delay and piecewise-linear threshold policy harvesting for a delayed predator-prey model. It is the first time that Holling response function of type III and the present threshold policy harvesting are associated with time delay. The trajectories of our delayed system are bounded; the stability of each equilibrium is analyzed with and without delay; there are local bifurcations as saddle-node bifurcation and Hopf bifurcation; optimal harvesting is also investigated. Numerical simulations are provided in order to illustrate each result.

  12. Stabilization of unstable steady states of a continuous stirred tank bioreactor with predator-prey kinetics.

    PubMed

    Tabiś, Bolesław; Skoneczny, Szymon

    2013-07-20

    Nonlinear properties of a bioreactor with a developed microbiological predator-prey food chain are discussed. The presence of the predator microorganism completely changes the position and stability of the stationary states. A wide range of unstable steady states appears, associated with high amplitude oscillations of the state variables. Without automatic control such a system can only operate in transient states, with the yield undergoing periodic changes following the dynamics of the stable limit cycle. Technologically, this is undesirable. It has been shown that the oscillations can be removed by employing continuous P or PI controllers. Moreover, with a PI-controller, the predator can be eliminated from the system.

  13. Stability, delay, and chaotic behavior in a lotka-volterra predator-prey system.

    PubMed

    Nakaoka, S; Saito, Y; Takeuchi, Y

    2006-01-01

    We consider the following Lotka-Volterra predator-prey system with two delays: x '( t ) = x ( t ) [ r(1) - ax ( t - tau(1) ) - by( t ) ] y '( t ) = y ( t ) [ - r(1) + cx ( t ) - dy( t - tau(2) ) ] ( E ) We show that a positive equilibrium of system ( E ) is globally asymptotically stable for small delays. Critical values of time delay through which system ( E ) undergoes a Hopf bifurcation are analytically determined. Some numerical simulations suggest an existence of subcritical Hopf bifurcation near the critical values of time delay. Further system (E) exhibits some chaotic behavior when tau(2) becomes large.

  14. An implementation of continuous genetic algorithm in parameter estimation of predator-prey model

    NASA Astrophysics Data System (ADS)

    Windarto

    2016-03-01

    Genetic algorithm is an optimization method based on the principles of genetics and natural selection in life organisms. The main components of this algorithm are chromosomes population (individuals population), parent selection, crossover to produce new offspring, and random mutation. In this paper, continuous genetic algorithm was implemented to estimate parameters in a predator-prey model of Lotka-Volterra type. For simplicity, all genetic algorithm parameters (selection rate and mutation rate) are set to be constant along implementation of the algorithm. It was found that by selecting suitable mutation rate, the algorithms can estimate these parameters well.

  15. Evolution of Lotka-Volterra predator-prey systems under telegraph noise.

    PubMed

    Auger, P; Du, N H; Hieu, N T

    2009-10-01

    In this paper we study a Lotka-Volterra predator-prey system with prey logistic growth under the telegraph noise. The telegraph noise switches at random two prey-predator models. The aim of this work is to determine the subset of omega-limit set of the system and show out the existence of a stationary distribution. We also focus on persistence of the predator and thus we look for conditions that allow persistence of the predator and prey community. We show that the asymptotic behaviour highly depends on the value of some constant lambda which is useful to make suitable predictions about the persistence of the system.

  16. Influence of predator mutual interference and prey refuge on Lotka-Volterra predator-prey dynamics

    NASA Astrophysics Data System (ADS)

    Chen, Liujuan; Chen, Fengde; Wang, Yiqin

    2013-11-01

    A Lotka-Volterra predator-prey model incorporating a constant number of prey using refuges and mutual interference for predator species is presented. By applying the divergency criterion and theories on exceptional directions and normal sectors, we show that the interior equilibrium is always globally asymptotically stable and two boundary equilibria are both saddle points. Our results indicate that prey refuge has no influence on the coexistence of predator and prey species of the considered model under the effects of mutual interference for predator species, which differently from the conclusion without predator mutual interference, thus improving some known ones. Numerical simulations are performed to illustrate the validity of our results.

  17. Stability and Hopf bifurcation in a diffusive predator-prey system incorporating a prey refuge.

    PubMed

    Chang, Xiaoyuan; Wei, Junjie

    2013-08-01

    A diffusive predator-prey model with Holling type II functional response and the no-flux boundary condition incorporating a constant prey refuge is considered. Globally asymptotically stability of the positive equilibrium is obtained. Regarding the constant number of prey refuge m as a bifurcation parameter, by analyzing the distribution of the eigenvalues, the existence of Hopf bifurcation is given. Employing the center manifold theory and normal form method, an algorithm for determining the properties of the Hopf bifurcation is derived. Some numerical simulations for illustrating the analysis results are carried out.

  18. Dynamics of the stochastic Leslie-Gower predator-prey system with randomized intrinsic growth rate

    NASA Astrophysics Data System (ADS)

    Zhao, Dianli; Yuan, Sanling

    2016-11-01

    This paper investigates the stochastic Leslie-Gower predator-prey system with randomized intrinsic growth rate. Existence of a unique global positive solution is proved firstly. Then we obtain the sufficient conditions for permanence in mean and almost sure extinction of the system. Furthermore, the stationary distribution is derived based on the positive equilibrium of the deterministic model, which shows the population is not only persistent but also convergent by time average under some assumptions. Finally, we illustrate our conclusions through two examples.

  19. Stability and bifurcation analysis for a delayed Lotka-Volterra predator-prey system

    NASA Astrophysics Data System (ADS)

    Yan, Xiang-Ping; Chu, Yan-Dong

    2006-11-01

    The present paper deals with a delayed Lotka-Volterra predator-prey system. By linearizing the equations and by analyzing the locations on the complex plane of the roots of the characteristic equation, we find the necessary conditions that the parameters should verify in order to have the oscillations in the system. In addition, the normal form of the Hopf bifurcation arising in the system is determined to investigate the direction and the stability of periodic solutions bifurcating from these Hopf bifurcations. To verify the obtained conditions, a special numerical example is also included.

  20. Cancer immunoediting: A process driven by metabolic competition as a predator-prey-shared resource type model.

    PubMed

    Kareva, Irina; Berezovskaya, Faina

    2015-09-01

    It is a well-established fact that tumors up-regulate glucose consumption to meet increasing demands for rapidly available energy by upregulating a purely glycolytic mode of glucose metabolism. What is often neglected is that activated cytotoxic cells of the immune system, integral players in the carcinogenesis process, also come to rely on glycolysis as a primary mode of glucose metabolism. Moreover, while cancer cells can revert back to aerobic metabolism, rapidly proliferating cytotoxic lymphocytes are incapable of performing their function when adequate resources are lacking. Consequently, it is likely that in the tumor microenvironment there may exist competition for shared resources between cancer cells and the cells of the immune system, which may underlie much of tumor-immune dynamics. Proposed here is a model of tumor-immune-glucose interactions, formulated as a predator-prey-common resource type system. The outcome of these interactions ranges from tumor elimination, to tumor dormancy, to unrestrained tumor growth. It is also predicted that the process of tumor escape can be preceded by periods of oscillatory tumor growth. A detailed bifurcation analysis of three subsystems of the model suggest that oscillatory regimes are a result of competition for shared resource (glucose) between the predator (immune cells) and the prey (cancer cells). Existence of competition for nutrients between cancer and immune cells may provide additional mechanistic insight as to why the efficacy of many immunotherapies may be limited.

  1. A solution to the accelerated-predator-satiety Lotka-Volterra predator-prey problem using Boubaker polynomial expansion scheme.

    PubMed

    Dubey, B; Zhao, T G; Jonsson, M; Rahmanov, H

    2010-05-01

    In this study, an analytical method is introduced for the identification of predator-prey populations time-dependent evolution in a Lotka-Volterra predator-prey model which takes into account the concept of accelerated-predator-satiety. Oppositely to most of the predator-prey problem models, the actual model does not suppose that the predation is strictly proportional to the prey density. In reference to some recent experimental results and particularly to the conclusions of May (1973) about predators which are 'never not hungry', an accelerated satiety function is matched with the initial conventional equations. Solutions are plotted and compared to some relevant ones. The obtained trends are in good agreement with many standard Lotka-Volterra solutions except for the asymptotic behaviour.

  2. A Rao-Blackwellized particle filter for joint parameter estimation and biomass tracking in a stochastic predator-prey system.

    PubMed

    Martín-Fernández, Laura; Gilioli, Gianni; Lanzarone, Ettore; Miguez, Joaquin; Pasquali, Sara; Ruggeri, Fabrizio; Ruiz, Diego P

    2014-06-01

    Functional response estimation and population tracking in predator-prey systems are critical problems in ecology. In this paper we consider a stochastic predator-prey system with a Lotka-Volterra functional response and propose a particle filtering method for: (a) estimating the behavioral parameter representing the rate of effective search per predator in the functional response and (b) forecasting the population biomass using field data. In particular, the proposed technique combines a sequential Monte Carlo sampling scheme for tracking the time-varying biomass with the analytical integration of the unknown behavioral parameter. In order to assess the performance of the method, we show results for both synthetic and observed data collected in an acarine predator-prey system, namely the pest mite Tetranychus urticae and the predatory mite Phytoseiulus persimilis. PMID:24506552

  3. Predator-prey effective model for the laminar-turbulent transition in a pipe

    NASA Astrophysics Data System (ADS)

    Shih, Hong-Yan; Hsieh, Tsung-Lin; Goldenfeld, Nigel

    2015-11-01

    The goal of our work is to understand the phenomenology of the laminar-turbulent transition in terms of standard phase transition concepts, and to calculate the universality class from first principles. Direct numerical simulations (DNS) of transitional pipe flow show that a collective mode -- a zonal flow -- is activated by Reynolds stress and suppresses turbulence subsequently, leading to stochastic predator-prey-like oscillations. Here we describe in detail the effective stochastic theory for such spatial-extended predator-prey modes. We present Monte Carlo simulations of the effective theory, showing that it reproduces the phenomenology of pipe flow experiments, including the phase diagram of puff decay and splitting. In particular, the theory predicts a super-exponential lifetime statistics for both puff decay and puff-splitting, in agreement with experimental data on pipe flow, and can be mapped exactly to the field theory of directed percolation. Our calculations strongly suggest that transitional turbulence in pipes is in the universality class of directed percolation. This work was partially supported by the National Science Foundation through grant NSF-DMR-1044901.

  4. A predator-prey model with generic birth and death rates for the predator.

    PubMed

    Terry, Alan J

    2014-02-01

    We propose and study a predator-prey model in which the predator has a Holling type II functional response and generic per capita birth and death rates. Given that prey consumption provides the energy for predator activity, and that the predator functional response represents the prey consumption rate per predator, we assume that the per capita birth and death rates for the predator are, respectively, increasing and decreasing functions of the predator functional response. These functions are monotonic, but not necessarily strictly monotonic, for all values of the argument. In particular, we allow the possibility that the predator birth rate is zero for all sufficiently small values of the predator functional response, reflecting the idea that a certain level of energy intake is needed before a predator can reproduce. Our analysis reveals that the model exhibits the behaviours typically found in predator-prey models - extinction of the predator population, convergence to a periodic orbit, or convergence to a co-existence fixed point. For a specific example, in which the predator birth and death rates are constant for all sufficiently small or large values of the predator functional response, we corroborate our analysis with numerical simulations. In the unlikely case where these birth and death rates equal the same constant for all sufficiently large values of the predator functional response, the model is capable of structurally unstable behaviour, with a small change in the initial conditions leading to a more pronounced change in the long-term dynamics.

  5. Predator-prey models with component Allee effect for predator reproduction.

    PubMed

    Terry, Alan J

    2015-12-01

    We present four predator-prey models with component Allee effect for predator reproduction. Using numerical simulation results for our models, we describe how the customary definitions of component and demographic Allee effects, which work well for single species models, can be extended to predators in predator-prey models by assuming that the prey population is held fixed. We also find that when the prey population is not held fixed, then these customary definitions may lead to conceptual problems. After this discussion of definitions, we explore our four models, analytically and numerically. Each of our models has a fixed point that represents predator extinction, which is always locally stable. We prove that the predator will always die out either if the initial predator population is sufficiently small or if the initial prey population is sufficiently small. Through numerical simulations, we explore co-existence fixed points. In addition, we demonstrate, by simulation, the existence of a stable limit cycle in one of our models. Finally, we derive analytical conditions for a co-existence trapping region in three of our models, and show that the fourth model cannot possess a particular kind of co-existence trapping region. We punctuate our results with comments on their real-world implications; in particular, we mention the possibility of prey resurgence from mortality events, and the possibility of failure in a biological pest control program.

  6. Effects of the prey refuge distribution on a predator-prey system

    NASA Astrophysics Data System (ADS)

    Lee, Sang-Hee; Kwon, Ohsung; Song, Hark-Soo

    2016-03-01

    The existence of prey refuges in a predator-prey system is known to be strongly related to the ecosystem's stability. In this study, we explored how the prey refuge distribution affects the predator-prey system. To do so, we constructed a spatial lattice model to simulate an integrative predator (wolf) - prey (rabbit) - plant (grass) relationship. When a wolf (rabbit) encountered a rabbit (grass), the wolf (rabbit) tended to move to the rabbit (grass) for foraging while the rabbit tended to escape from the wolf. These behaviors were mathematically described by the degrees of willingness for hunting ( H) and escaping ( E). Initially, n refuges for prey were heterogeneously distributed in the lattice space. The heterogeneity was characterized as variable A. Higher values of A equate to higher aggregation in the refuge. We investigated the mean population density for different values of H, E, and A. To simply characterize the refuge distribution effect, we built an H-E grid map containing the population density for each species. Then, we counted the number of grids, N, with a population density ≥ 0.25. Simulation results showed that an appropriate value of A positively affected prey survival while values of A were too high had a negative effect on prey survival. The results were explained by using the trade-off between the staying time of the prey in the refuge and the cluster size of the refuge.

  7. The Lotka-Volterra predator-prey model with foraging-predation risk trade-offs.

    PubMed

    Krivan, Vlastimil

    2007-11-01

    This article studies the effects of adaptive changes in predator and/or prey activities on the Lotka-Volterra predator-prey population dynamics. The model assumes the classical foraging-predation risk trade-offs: increased activity increases population growth rate, but it also increases mortality rate. The model considers three scenarios: prey only are adaptive, predators only are adaptive, and both species are adaptive. Under all these scenarios, the neutral stability of the classical Lotka-Volterra model is partially lost because the amplitude of maximum oscillation in species numbers is bounded, and the bound is independent of the initial population numbers. Moreover, if both prey and predators behave adaptively, the neutral stability can be completely lost, and a globally stable equilibrium would appear. This is because prey and/or predator switching leads to a piecewise constant prey (predator) isocline with a vertical (horizontal) part that limits the amplitude of oscillations in prey and predator numbers, exactly as suggested by Rosenzweig and MacArthur in their seminal work on graphical stability analysis of predator-prey systems. Prey and predator activities in a long-term run are calculated explicitly. This article shows that predictions based on short-term behavioral experiments may not correspond to long-term predictions when population dynamics are considered.

  8. Predator-prey dynamics stabilised by nonlinearity explain oscillations in dust-forming plasmas

    NASA Astrophysics Data System (ADS)

    Ross, A. E.; McKenzie, D. R.

    2016-04-01

    Dust-forming plasmas are ionised gases that generate particles from a precursor. In nature, dust-forming plasmas are found in flames, the interstellar medium and comet tails. In the laboratory, they are valuable in generating nanoparticles for medicine and electronics. Dust-forming plasmas exhibit a bizarre, even puzzling behaviour in which they oscillate with timescales of seconds to minutes. Here we show how the problem of understanding these oscillations may be cast as a predator-prey problem, with electrons as prey and particles as predators. The addition of a nonlinear loss term to the classic Lotka-Volterra equations used for describing the predator-prey problem in ecology not only stabilises the oscillations in the solutions for the populations of electrons and particles in the plasma but also explains the behaviour in more detail. The model explains the relative phase difference of the two populations, the way in which the frequency of the oscillations varies with the concentration of the precursor gas, and the oscillations of the light emission, determined by the populations of both species. Our results demonstrate the value of adopting an approach to a complex physical science problem that has been found successful in ecology, where complexity is always present.

  9. Predator-prey dynamics stabilised by nonlinearity explain oscillations in dust-forming plasmas.

    PubMed

    Ross, A E; McKenzie, D R

    2016-01-01

    Dust-forming plasmas are ionised gases that generate particles from a precursor. In nature, dust-forming plasmas are found in flames, the interstellar medium and comet tails. In the laboratory, they are valuable in generating nanoparticles for medicine and electronics. Dust-forming plasmas exhibit a bizarre, even puzzling behaviour in which they oscillate with timescales of seconds to minutes. Here we show how the problem of understanding these oscillations may be cast as a predator-prey problem, with electrons as prey and particles as predators. The addition of a nonlinear loss term to the classic Lotka-Volterra equations used for describing the predator-prey problem in ecology not only stabilises the oscillations in the solutions for the populations of electrons and particles in the plasma but also explains the behaviour in more detail. The model explains the relative phase difference of the two populations, the way in which the frequency of the oscillations varies with the concentration of the precursor gas, and the oscillations of the light emission, determined by the populations of both species. Our results demonstrate the value of adopting an approach to a complex physical science problem that has been found successful in ecology, where complexity is always present.

  10. Predator-prey relationships in a Mediterranean vertebrate system: Bonelli's eagles, rabbits and partridges.

    PubMed

    Moleón, Marcos; Sánchez-Zapata, José A; Gil-Sánchez, José M; Ballesteros-Duperón, Elena; Barea-Azcón, José M; Virgós, Emilio

    2012-03-01

    How predators impact on prey population dynamics is still an unsolved issue for most wild predator-prey communities. When considering vertebrates, important concerns constrain a comprehensive understanding of the functioning of predator-prey relationships worldwide; e.g. studies simultaneously quantifying 'functional' and 'numerical responses' (i.e., the 'total response') are rare. The functional, the numerical, and the resulting total response (i.e., how the predator per capita intake, the population of predators and the total of prey eaten by the total predators vary with prey densities) are fundamental as they reveal the predator's ability to regulate prey population dynamics. Here, we used a multi-spatio-temporal scale approach to simultaneously explore the functional and numerical responses of a territorial predator (Bonelli's eagle Hieraaetus fasciatus) to its two main prey species (the rabbit Oryctolagus cuniculus and the red-legged partridge Alectoris rufa) during the breeding period in a Mediterranean system of south Spain. Bonelli's eagle responded functionally, but not numerically, to rabbit/partridge density changes. Type II, non-regulatory, functional responses (typical of specialist predators) offered the best fitting models for both prey. In the absence of a numerical response, Bonelli's eagle role as a regulating factor of rabbit and partridge populations seems to be weak in our study area. Simple (prey density-dependent) functional response models may well describe the short-term variation in a territorial predator's consumption rate in complex ecosystems.

  11. Predator-prey dynamics stabilised by nonlinearity explain oscillations in dust-forming plasmas

    PubMed Central

    Ross, A. E.; McKenzie, D. R.

    2016-01-01

    Dust-forming plasmas are ionised gases that generate particles from a precursor. In nature, dust-forming plasmas are found in flames, the interstellar medium and comet tails. In the laboratory, they are valuable in generating nanoparticles for medicine and electronics. Dust-forming plasmas exhibit a bizarre, even puzzling behaviour in which they oscillate with timescales of seconds to minutes. Here we show how the problem of understanding these oscillations may be cast as a predator-prey problem, with electrons as prey and particles as predators. The addition of a nonlinear loss term to the classic Lotka-Volterra equations used for describing the predator-prey problem in ecology not only stabilises the oscillations in the solutions for the populations of electrons and particles in the plasma but also explains the behaviour in more detail. The model explains the relative phase difference of the two populations, the way in which the frequency of the oscillations varies with the concentration of the precursor gas, and the oscillations of the light emission, determined by the populations of both species. Our results demonstrate the value of adopting an approach to a complex physical science problem that has been found successful in ecology, where complexity is always present. PMID:27046237

  12. Predator-prey dynamics stabilised by nonlinearity explain oscillations in dust-forming plasmas.

    PubMed

    Ross, A E; McKenzie, D R

    2016-01-01

    Dust-forming plasmas are ionised gases that generate particles from a precursor. In nature, dust-forming plasmas are found in flames, the interstellar medium and comet tails. In the laboratory, they are valuable in generating nanoparticles for medicine and electronics. Dust-forming plasmas exhibit a bizarre, even puzzling behaviour in which they oscillate with timescales of seconds to minutes. Here we show how the problem of understanding these oscillations may be cast as a predator-prey problem, with electrons as prey and particles as predators. The addition of a nonlinear loss term to the classic Lotka-Volterra equations used for describing the predator-prey problem in ecology not only stabilises the oscillations in the solutions for the populations of electrons and particles in the plasma but also explains the behaviour in more detail. The model explains the relative phase difference of the two populations, the way in which the frequency of the oscillations varies with the concentration of the precursor gas, and the oscillations of the light emission, determined by the populations of both species. Our results demonstrate the value of adopting an approach to a complex physical science problem that has been found successful in ecology, where complexity is always present. PMID:27046237

  13. Analysis of a predator-prey model with Holling II functional response concerning impulsive control strategy

    NASA Astrophysics Data System (ADS)

    Liu, Bing; Teng, Zhidong; Chen, Lansun

    2006-08-01

    According to biological and chemical control strategy for pest control, we investigate the dynamic behavior of a Holling II functional response predator-prey system concerning impulsive control strategy-periodic releasing natural enemies and spraying pesticide at different fixed times. By using Floquet theorem and small amplitude perturbation method, we prove that there exists a stable pest-eradication periodic solution when the impulsive period is less than some critical value. Further, the condition for the permanence of the system is also given. Numerical results show that the system we consider can take on various kinds of periodic fluctuations and several types of attractor coexistence and is dominated by periodic, quasiperiodic and chaotic solutions, which implies that the presence of pulses makes the dynamic behavior more complex. Finally, we conclude that our impulsive control strategy is more effective than the classical one if we take chemical control efficiently.

  14. Cannibalistic Predator-Prey Model with Disease in Predator — A Delay Model

    NASA Astrophysics Data System (ADS)

    Biswas, Santosh; Samanta, Sudip; Chattopadhyay, Joydev

    In this paper, we propose and analyze a cannibalistic predator-prey model with a transmissible disease in the predator population. The disease can be transmitted through contacts with infected individuals as well as the cannibalism of an infected predator. We also consider incubation delay in disease transmission, where the incubation period represents the time in which the infectious agent develops in the host. Local stability analysis of the system around the biologically feasible equilibria is studied. Bifurcation analysis of the system around interior equilibrium is also studied. Applying the normal form theory and central manifold theorem, the direction of Hopf bifurcation, the stability and the period of bifurcating periodic solutions are derived. Under appropriate conditions, the permanence of the system with time delay is proved. Our results suggest that incubation delay destabilizes the system and can produce chaos. We also observe that cannibalism can control disease and population oscillations. Extensive numerical simulations are performed to support our analytical results.

  15. An impulsive predator-prey model with disease in the prey for integrated pest management

    NASA Astrophysics Data System (ADS)

    Shi, Ruiqing; Chen, Lansun

    2010-02-01

    In this paper, an impulsive predator-prey model with disease in the prey is investigated for the purpose of integrated pest management. In the first part of the main results, we get the sufficient condition for the global stability of the susceptible pest-eradication periodic solution. This means if the release amount of infective prey and predator satisfy the condition, then the pest will be doomed. In the second part of the main results, we also get the sufficient condition for the permanence of the system. This means if the release amount of infective prey and predator satisfy the condition, then the prey and the predator will coexist. In the last section, we interpret our mathematical results. We also point out some possible future work.

  16. The diffusive Lotka-Volterra predator-prey system with delay.

    PubMed

    Al Noufaey, K S; Marchant, T R; Edwards, M P

    2015-12-01

    Semi-analytical solutions for the diffusive Lotka-Volterra predator-prey system with delay are considered in one and two-dimensional domains. The Galerkin method is applied, which approximates the spatial structure of both the predator and prey populations. This approach is used to obtain a lower-order, ordinary differential delay equation model for the system of governing delay partial differential equations. Steady-state and transient solutions and the region of parameter space, in which Hopf bifurcations occur, are all found. In some cases simple linear expressions are found as approximations, to describe steady-state solutions and the Hopf parameter regions. An asymptotic analysis for the periodic solution near the Hopf bifurcation point is performed for the one-dimensional domain. An excellent agreement is shown in comparisons between semi-analytical and numerical solutions of the governing equations.

  17. Dynamics of stochastic predator-prey models with Holling II functional response

    NASA Astrophysics Data System (ADS)

    Liu, Qun; Zu, Li; Jiang, Daqing

    2016-08-01

    In this paper, we consider the dynamics of stochastic predator-prey models with Holling II functional response. For the stochastic systems, we firstly establish sufficient conditions for the existence of the globally positive solutions. Then we investigate the asymptotic moment estimations of the positive solutions and study the ultimately bounded in the mean of them. Thirdly, by constructing some suitable Lyapunov functions, we verify that there are unique stationary distributions and they are ergodic. The obtained results show that the systems still retain some stability in the sense of weak stability provided that the intensity of the white noise is relatively small. Finally, some numerical simulations are introduced to illustrate our main results.

  18. Dynamic analysis of a fractional order delayed predator-prey system with harvesting.

    PubMed

    Song, Ping; Zhao, Hongyong; Zhang, Xuebing

    2016-06-01

    In the study, we consider a fractional order delayed predator-prey system with harvesting terms. Our discussion is divided into two cases. Without harvesting, we investigate the stability of the model, as well as deriving some criteria by analyzing the associated characteristic equation. With harvesting, we investigate the dynamics of the system from the aspect of local stability and analyze the influence of harvesting to prey and predator. Finally, numerical simulations are presented to verify our theoretical results. In addition, using numerical simulations, we investigate the effects of fractional order and harvesting terms on dynamic behavior. Our numerical results show that fractional order can affect not only the stability of the system without harvesting terms, but also the switching times from stability to instability and to stability. The harvesting can convert the equilibrium point, the stability and the stability switching times.

  19. Responses of many-species predator-prey systems to perturbations

    NASA Astrophysics Data System (ADS)

    Esmaily, Shadi; Pleimling, Michel

    2015-03-01

    We study the responses of many-species predator-prey systems, both in the well-mixed case as well as on a two-dimensional lattice, to permanent and transient perturbations. In the case of a weak transient perturbation the system returns to the original steady state, whereas a permanent perturbation pushes the system into a new steady state. Using Monte Carlo simulations, we monitor the approach to stationarity after a perturbation through a variety of quantities, as for example time-dependent particle densities and correlation functions. Different types of perturbations are studied, ranging from a change in reaction rates to the injection of additional individuals into the system, the latter perturbation mimicking immigration. This work is supported by the US National Science Foundation through Grant DMR-1205309.

  20. Dynamic analysis of a fractional order delayed predator-prey system with harvesting.

    PubMed

    Song, Ping; Zhao, Hongyong; Zhang, Xuebing

    2016-06-01

    In the study, we consider a fractional order delayed predator-prey system with harvesting terms. Our discussion is divided into two cases. Without harvesting, we investigate the stability of the model, as well as deriving some criteria by analyzing the associated characteristic equation. With harvesting, we investigate the dynamics of the system from the aspect of local stability and analyze the influence of harvesting to prey and predator. Finally, numerical simulations are presented to verify our theoretical results. In addition, using numerical simulations, we investigate the effects of fractional order and harvesting terms on dynamic behavior. Our numerical results show that fractional order can affect not only the stability of the system without harvesting terms, but also the switching times from stability to instability and to stability. The harvesting can convert the equilibrium point, the stability and the stability switching times. PMID:27026265

  1. Moment stability for a predator-prey model with parametric dichotomous noises

    NASA Astrophysics Data System (ADS)

    Jin, Yan-Fei

    2015-06-01

    In this paper, we investigate the solution moment stability for a Harrison-type predator-prey model with parametric dichotomous noises. Using the Shapiro-Loginov formula, the equations for the first-order and second-order moments are obtained and the corresponding stable conditions are given. It is found that the solution moment stability depends on the noise intensity and correlation time of noise. The first-order and second-order moments become unstable with the decrease of correlation time. That is, the dichotomous noise can improve the solution moment stability with respect to Gaussian white noise. Finally, some numerical results are presented to verify the theoretical analyses. Project supported by the National Natural Science Foundation of China (Grant No. 11272051).

  2. Stationary distribution and periodic solution for stochastic predator-prey systems with nonlinear predator harvesting

    NASA Astrophysics Data System (ADS)

    Zuo, Wenjie; Jiang, Daqing

    2016-07-01

    In this paper, we investigate the dynamics of the stochastic autonomous and non-autonomous predator-prey systems with nonlinear predator harvesting respectively. For the autonomous system, we first give the existence of the global positive solution. Then, in the case of persistence, we prove that there exists a unique stationary distribution and it has ergodicity by constructing a suitable Lyapunov function. The result shows that, the relatively weaker white noise will strengthen the stability of the system, but the stronger white noise will result in the extinction of one or two species. Particularly, for the non-autonomous periodic system, we show that there exists at least one nontrivial positive periodic solution according to the theory of Khasminskii. Finally, numerical simulations illustrate our theoretical results.

  3. The diffusive Lotka-Volterra predator-prey system with delay.

    PubMed

    Al Noufaey, K S; Marchant, T R; Edwards, M P

    2015-12-01

    Semi-analytical solutions for the diffusive Lotka-Volterra predator-prey system with delay are considered in one and two-dimensional domains. The Galerkin method is applied, which approximates the spatial structure of both the predator and prey populations. This approach is used to obtain a lower-order, ordinary differential delay equation model for the system of governing delay partial differential equations. Steady-state and transient solutions and the region of parameter space, in which Hopf bifurcations occur, are all found. In some cases simple linear expressions are found as approximations, to describe steady-state solutions and the Hopf parameter regions. An asymptotic analysis for the periodic solution near the Hopf bifurcation point is performed for the one-dimensional domain. An excellent agreement is shown in comparisons between semi-analytical and numerical solutions of the governing equations. PMID:26471317

  4. Canard cycles for predator-prey systems with Holling types of functional response

    NASA Astrophysics Data System (ADS)

    Li, Chengzhi; Zhu, Huaiping

    By using the singular perturbation theory developed by Dumortier and Roussarie and recent work of De Maesschalck and Dumortier, we study the canard phenomenon for predator-prey systems with response functions of Holling types. We first develop a formula for computing the slow divergence integrals. By using the formula we prove that for the systems with the response function of Holling types III and IV the cyclicity of any limit periodic set is at most two, that is at most two families of hyperbolic limit cycles or at most one family of limit cycles with multiplicity two can bifurcate from the limit periodic set by small perturbations. We also indicate the regions in parameter space where the corresponding limit periodic set has cyclicity at most one or at most two.

  5. On the dynamics of a generalized predator-prey system with Z-type control.

    PubMed

    Lacitignola, Deborah; Diele, Fasma; Marangi, Carmela; Provenzale, Antonello

    2016-10-01

    We apply the Z-control approach to a generalized predator-prey system and consider the specific case of indirect control of the prey population. We derive the associated Z-controlled model and investigate its properties from the point of view of the dynamical systems theory. The key role of the design parameter λ for the successful application of the method is stressed and related to specific dynamical properties of the Z-controlled model. Critical values of the design parameter are also found, delimiting the λ-range for the effectiveness of the Z-method. Analytical results are then numerically validated by the means of two ecological models: the classical Lotka-Volterra model and a model related to a case study of the wolf-wild boar dynamics in the Alta Murgia National Park. Investigations on these models also highlight how the Z-control method acts in respect to different dynamical regimes of the uncontrolled model.

  6. Periodic solutions of a nonautonomous predator-prey system with stage structure and time delays

    NASA Astrophysics Data System (ADS)

    Xu, Rui; Wang, Zhiqiang

    2006-11-01

    A nonautonomous Lotka-Volterra type predator-prey model with stage structure and time delays is investigated. It is assumed in the model that the individuals in each species may belong to one of two classes: the immatures and the matures, the age to maturity is presented by a time delay, and that the immature predators do not feed on prey and do not have the ability to reproduce. By some comparison arguments we first discuss the permanence of the model. By using the continuation theorem of coincidence degree theory, sufficient conditions are derived for the existence of positive periodic solutions to the model. By means of a suitable Lyapunov functional, sufficient conditions are obtained for the uniqueness and global stability of the positive periodic solutions to the model.

  7. A Comparison of the Seasonal Movements of Tiger Sharks and Green Turtles Provides Insight into Their Predator-Prey Relationship

    PubMed Central

    Fitzpatrick, Richard; Thums, Michele; Bell, Ian; Meekan, Mark G.; Stevens, John D.; Barnett, Adam

    2012-01-01

    During the reproductive season, sea turtles use a restricted area in the vicinity of their nesting beaches, making them vulnerable to predation. At Raine Island (Australia), the highest density green turtle Chelonia mydas rookery in the world, tiger sharks Galeocerdo cuvier have been observed to feed on green turtles, and it has been suggested that they may specialise on such air-breathing prey. However there is little information with which to examine this hypothesis. We compared the spatial and temporal components of movement behaviour of these two potentially interacting species in order to provide insight into the predator-prey relationship. Specifically, we tested the hypothesis that tiger shark movements are more concentrated at Raine Island during the green turtle nesting season than outside the turtle nesting season when turtles are not concentrated at Raine Island. Turtles showed area-restricted search behaviour around Raine Island for ∼3–4 months during the nesting period (November–February). This was followed by direct movement (transit) to putative foraging grounds mostly in the Torres Straight where they switched to area-restricted search mode again, and remained resident for the remainder of the deployment (53–304 days). In contrast, tiger sharks displayed high spatial and temporal variation in movement behaviour which was not closely linked to the movement behaviour of green turtles or recognised turtle foraging grounds. On average, tiger sharks were concentrated around Raine Island throughout the year. While information on diet is required to determine whether tiger sharks are turtle specialists our results support the hypothesis that they target this predictable and plentiful prey during turtle nesting season, but they might not focus on this less predictable food source outside the nesting season. PMID:23284819

  8. A comparison of the seasonal movements of tiger sharks and green turtles provides insight into their predator-prey relationship.

    PubMed

    Fitzpatrick, Richard; Thums, Michele; Bell, Ian; Meekan, Mark G; Stevens, John D; Barnett, Adam

    2012-01-01

    During the reproductive season, sea turtles use a restricted area in the vicinity of their nesting beaches, making them vulnerable to predation. At Raine Island (Australia), the highest density green turtle Chelonia mydas rookery in the world, tiger sharks Galeocerdo cuvier have been observed to feed on green turtles, and it has been suggested that they may specialise on such air-breathing prey. However there is little information with which to examine this hypothesis. We compared the spatial and temporal components of movement behaviour of these two potentially interacting species in order to provide insight into the predator-prey relationship. Specifically, we tested the hypothesis that tiger shark movements are more concentrated at Raine Island during the green turtle nesting season than outside the turtle nesting season when turtles are not concentrated at Raine Island. Turtles showed area-restricted search behaviour around Raine Island for ∼3-4 months during the nesting period (November-February). This was followed by direct movement (transit) to putative foraging grounds mostly in the Torres Straight where they switched to area-restricted search mode again, and remained resident for the remainder of the deployment (53-304 days). In contrast, tiger sharks displayed high spatial and temporal variation in movement behaviour which was not closely linked to the movement behaviour of green turtles or recognised turtle foraging grounds. On average, tiger sharks were concentrated around Raine Island throughout the year. While information on diet is required to determine whether tiger sharks are turtle specialists our results support the hypothesis that they target this predictable and plentiful prey during turtle nesting season, but they might not focus on this less predictable food source outside the nesting season. PMID:23284819

  9. Enhanced understanding of predator-prey relationships using molecular methods to identify predator species, individual and sex.

    PubMed

    Mumma, Matthew A; Soulliere, Colleen E; Mahoney, Shane P; Waits, Lisette P

    2014-01-01

    Predator species identification is an important step in understanding predator-prey interactions, but predator identifications using kill site observations are often unreliable. We used molecular tools to analyse predator saliva, scat and hair from caribou calf kills in Newfoundland, Canada to identify the predator species, individual and sex. We sampled DNA from 32 carcasses using cotton swabs to collect predator saliva. We used fragment length analysis and sequencing of mitochondrial DNA to distinguish between coyote, black bear, Canada lynx and red fox and used nuclear DNA microsatellite analysis to identify individuals. We compared predator species detected using molecular tools to those assigned via field observations at each kill. We identified a predator species at 94% of carcasses using molecular methods, while observational methods assigned a predator species to 62.5% of kills. Molecular methods attributed 66.7% of kills to coyote and 33.3% to black bear, while observations assigned 40%, 45%, 10% and 5% to coyote, bear, lynx and fox, respectively. Individual identification was successful at 70% of kills where a predator species was identified. Only one individual was identified at each kill, but some individuals were found at multiple kills. Predator sex was predominantly male. We demonstrate the first large-scale evaluation of predator species, individual and sex identification using molecular techniques to extract DNA from swabs of wild prey carcasses. Our results indicate that kill site swabs (i) can be highly successful in identifying the predator species and individual responsible; and (ii) serve to inform and complement traditional methods. PMID:23957886

  10. Inconstancy in predator/prey ratios in Quaternary large mammal communities of Italy, with an appraisal of mechanisms

    NASA Astrophysics Data System (ADS)

    Raia, Pasquale; Meloro, Carlo; Barbera, Carmela

    2007-03-01

    Constancy in predator/prey ratio (PPR) is a controversial issue in ecological research. Published reports support both constancy and inconstancy of the ratio in animal communities. Only a few studies, however, specifically address its course through time. Here we study the course of predator/prey ratio in communities of large Plio-Pleistocene mammals in Italy. After controlling for taphonomic biases, we find strong support for PPR inconstancy through time. Extinction, dispersal events, and differences in body size trends between predators and their prey were found to affect the ratio, which was distributed almost bimodally. We suggest that this stepwise dynamic in PPR indicates changes in ecosystem functioning. Prey richness was controlled by predation when PPR was high and by resources when PPR was low.

  11. Differential effects of mercury on activity and swimming endurance in a model aquatic predator-prey system

    SciTech Connect

    Benton, M.J.; Carlson, J.K.; Benson, W.H.

    1994-12-31

    In addition to direct effects of contaminants on organisms, populations and communities, there may also be indirect or secondary effects related to altered behavior. This study examined the effects of mercury exposure on locomotory behavior in a model predator-prey system of largemouth bass (Micropterus salmoides) and fathead minnows (Pimephales promelas). At both low and high mercury concentrations, there was a significant effect of exposure on unforced activity and swimming endurance in fathead minnows. At all tested mercury concentrations, activity and endurance also were both positively correlated to body length. However, largemouth bass unforced activity and swimming endurance were not affected by exposure to low mercury concentrations. In light of these differential locomotory effects at environmentally relevant mercury concentrations, the potential impact on aquatic predator-prey systems will be discussed.

  12. Spatiotemporal Patterns of a Predator-Prey System with an Allee Effect and Holling Type III Functional Response

    NASA Astrophysics Data System (ADS)

    Li, Yuanyuan; Wang, Jinfeng

    A diffusive Gause type predator-prey system with Allee effect in prey growth and Holling type III response subject to Neumann boundary conditions is investigated. Existence of nonconstant positive steady state solutions is proved by Leray-Schauder degree theory and bifurcation theory. Global stability of the positive equilibrium of the system is also investigated. Moreover, bifurcations of spatially homogeneous and nonhomogeneous periodic solutions are analyzed. Our rigorous results justify some recent ecological observations.

  13. Global existence of solutions and uniform persistence of a diffusive predator-prey model with prey-taxis

    NASA Astrophysics Data System (ADS)

    Wu, Sainan; Shi, Junping; Wu, Boying

    2016-04-01

    This paper proves the global existence and boundedness of solutions to a general reaction-diffusion predator-prey system with prey-taxis defined on a smooth bounded domain with no-flux boundary condition. The result holds for domains in arbitrary spatial dimension and small prey-taxis sensitivity coefficient. This paper also proves the existence of a global attractor and the uniform persistence of the system under some additional conditions. Applications to models from ecology and chemotaxis are discussed.

  14. On the dynamics of a generalized predator-prey system with Z-type control.

    PubMed

    Lacitignola, Deborah; Diele, Fasma; Marangi, Carmela; Provenzale, Antonello

    2016-10-01

    We apply the Z-control approach to a generalized predator-prey system and consider the specific case of indirect control of the prey population. We derive the associated Z-controlled model and investigate its properties from the point of view of the dynamical systems theory. The key role of the design parameter λ for the successful application of the method is stressed and related to specific dynamical properties of the Z-controlled model. Critical values of the design parameter are also found, delimiting the λ-range for the effectiveness of the Z-method. Analytical results are then numerically validated by the means of two ecological models: the classical Lotka-Volterra model and a model related to a case study of the wolf-wild boar dynamics in the Alta Murgia National Park. Investigations on these models also highlight how the Z-control method acts in respect to different dynamical regimes of the uncontrolled model. PMID:27474208

  15. Using predator-prey theory to predict outcomes of broadscale experiments to reduce apparent competition.

    PubMed

    Serrouya, Robert; Wittmann, Meike J; McLellan, Bruce N; Wittmer, Heiko U; Boutin, Stan

    2015-05-01

    Apparent competition is an important process influencing many ecological communities. We used predator-prey theory to predict outcomes of ecosystem experiments aimed at mitigating apparent competition by reducing primary prey. Simulations predicted declines in secondary prey following reductions in primary prey because predators consumed more secondary prey until predator numbers responded to reduced prey densities. Losses were exacerbated by a higher carrying capacity of primary prey and a longer lag time of the predator's numerical response, but a gradual reduction in primary prey was less detrimental to the secondary prey. We compared predictions against two field experiments where endangered woodland caribou (Rangifer tarandus caribou) were victims of apparent competition. First, when deer (Odocoileus sp.) declined suddenly following a severe winter, cougar (Puma concolor) declined with a 1-2-year lag, yet in the interim more caribou were killed by cougars, and caribou populations declined by 40%. Second, when moose (Alces alces) were gradually reduced using a management experiment, wolf (Canis lupus) populations declined but did not shift consumption to caribou, and the largest caribou subpopulation stabilized. The observed contrasting outcomes of sudden versus gradual declines in primary prey supported theoretical predictions. Combining theory with field studies clarified how to manage communities to mitigate endangerment caused by apparent competition that affects many taxa. PMID:25905509

  16. Fluctuation-induced patterns and rapid evolution in predator-prey ecosystems

    NASA Astrophysics Data System (ADS)

    Goldenfeld, Nigel

    2014-03-01

    Predator-prey ecosystems exhibit noisy, persistent cycles that cannot be described by intuitive population-level differential equations such as the Lotka-Volterra equations. Traditionally this paradox has been met by including additional nonlinearities such as predator satiation to force limit cycle behavior. Over the last few years, it has been realized that individual-level descriptions, combined with systematic perturbation techniques can reproduce the key features of such systems in a minimal way, without requiring many additional assumptions or fine tunings. Here I review work in this area that uses these techniques to treat spatial patterns and the phenomenon of rapidly evolving prey sub-populations. In the latter case, I show how stochastic individual-level models reproduce the key features observed in chemostats and in the wild, including anomalous phase shifts between predator and prey species, evolutionary cycles and cryptic cycles. This work shows that stochastic individual-level models naturally describe systems where evolutionary time scales surprisingly match ecosystem time scales.

  17. Maternal effects on offspring consumption can stabilize fluctuating predator-prey systems.

    PubMed

    Garbutt, Jennie S; Little, Tom J; Hoyle, Andy

    2015-12-01

    Maternal effects, where the conditions experienced by mothers affect the phenotype of their offspring, are widespread in nature and have the potential to influence population dynamics. However, they are very rarely included in models of population dynamics. Here, we investigate a recently discovered maternal effect, where maternal food availability affects the feeding rate of offspring so that well-fed mothers produce fast-feeding offspring. To understand how this maternal effect influences population dynamics, we explore novel predator-prey models where the consumption rate of predators is modified by changes in maternal prey availability. We address the 'paradox of enrichment', a theoretical prediction that nutrient enrichment destabilizes populations, leading to cycling behaviour and an increased risk of extinction, which has proved difficult to confirm in the wild. Our models show that enriched populations can be stabilized by maternal effects on feeding rate, thus presenting an intriguing potential explanation for the general absence of 'paradox of enrichment' behaviour in natural populations. This stabilizing influence should also reduce a population's risk of extinction and vulnerability to harvesting.

  18. Effects of additional food in a delayed predator-prey model.

    PubMed

    Sahoo, Banshidhar; Poria, Swarup

    2015-03-01

    We examine the effects of supplying additional food to predator in a gestation delay induced predator-prey system with habitat complexity. Additional food works in favor of predator growth in our model. Presence of additional food reduces the predatory attack rate to prey in the model. Supplying additional food we can control predator population. Taking time delay as bifurcation parameter the stability of the coexisting equilibrium point is analyzed. Hopf bifurcation analysis is done with respect to time delay in presence of additional food. The direction of Hopf bifurcations and the stability of bifurcated periodic solutions are determined by applying the normal form theory and the center manifold theorem. The qualitative dynamical behavior of the model is simulated using experimental parameter values. It is observed that fluctuations of the population size can be controlled either by supplying additional food suitably or by increasing the degree of habitat complexity. It is pointed out that Hopf bifurcation occurs in the system when the delay crosses some critical value. This critical value of delay strongly depends on quality and quantity of supplied additional food. Therefore, the variation of predator population significantly effects the dynamics of the model. Model results are compared with experimental results and biological implications of the analytical findings are discussed in the conclusion section.

  19. Using predator-prey theory to predict outcomes of broadscale experiments to reduce apparent competition.

    PubMed

    Serrouya, Robert; Wittmann, Meike J; McLellan, Bruce N; Wittmer, Heiko U; Boutin, Stan

    2015-05-01

    Apparent competition is an important process influencing many ecological communities. We used predator-prey theory to predict outcomes of ecosystem experiments aimed at mitigating apparent competition by reducing primary prey. Simulations predicted declines in secondary prey following reductions in primary prey because predators consumed more secondary prey until predator numbers responded to reduced prey densities. Losses were exacerbated by a higher carrying capacity of primary prey and a longer lag time of the predator's numerical response, but a gradual reduction in primary prey was less detrimental to the secondary prey. We compared predictions against two field experiments where endangered woodland caribou (Rangifer tarandus caribou) were victims of apparent competition. First, when deer (Odocoileus sp.) declined suddenly following a severe winter, cougar (Puma concolor) declined with a 1-2-year lag, yet in the interim more caribou were killed by cougars, and caribou populations declined by 40%. Second, when moose (Alces alces) were gradually reduced using a management experiment, wolf (Canis lupus) populations declined but did not shift consumption to caribou, and the largest caribou subpopulation stabilized. The observed contrasting outcomes of sudden versus gradual declines in primary prey supported theoretical predictions. Combining theory with field studies clarified how to manage communities to mitigate endangerment caused by apparent competition that affects many taxa.

  20. Transmission Dynamics of Resistant Bacteria in a Predator-Prey System

    PubMed Central

    Gao, Xubin; Pan, Qiuhui

    2015-01-01

    This paper discusses the impact on human health caused by the addition of antibiotics in the feed of food animals. We use the established transmission rule of resistant bacteria and combine it with a predator-prey system to determine a differential equations model. The equations have three steady equilibrium points corresponding to three population dynamics states under the influence of resistant bacteria. In order to quantitatively analyze the stability of the equilibrium points, we focused on the basic reproduction numbers. Then, both the local and global stability of the equilibrium points were quantitatively analyzed by using essential mathematical methods. Numerical results are provided to relate our model properties to some interesting biological cases. Finally, we discuss the effect of the two main parameters of the model, the proportion of antibiotics added to feed and the predation rate, and estimate the human health impacts related to the amount of feed antibiotics used. We further propose an approach for the prevention of the large-scale spread of resistant bacteria and illustrate the necessity of controlling the amount of in-feed antibiotics used. PMID:25821510

  1. Shedding light on microbial predator-prey population dynamics using a quantitative bioluminescence assay.

    PubMed

    Im, Hansol; Kim, Dasol; Ghim, Cheol-Min; Mitchell, Robert J

    2014-01-01

    This study assessed the dynamics of predation by Bdellovibrio bacteriovorus HD 100. Predation tests with two different bioluminescent strains of Escherichia coli, one expressing a heat-labile bacterial luciferase and the other a heat-stable form, showed near identical losses from both, indicating that protein expression and stability are not responsible for the "shutting-off" of the prey bioluminescence (BL). Furthermore, it was found that the loss in the prey BL was not proportional with the predator-to-prey ratio (PPR), with significantly greater losses seen as this value was increased. This suggests that other factors also play a role in lowering the prey BL. The loss in BL, however, was very consistent within nine independent experiments to the point that we were able to reliably estimate the predator numbers within only 1 h when present at a PPR of 6 or higher, Using a fluorescent prey, we found that premature lysis of the prey occurs at a significant level and was more prominent as the PPR ratio increased. Based upon the supernatant fluorescent signal, even a relatively low PPR of 10-20 led to approximately 5% of the prey population being prematurely lysed within 1 h, while a PPR of 90 led to nearly 15% lysis. Consequently, we developed a modified Lotka-Volterra predator-prey model that accounted for this lysis and is able to reliably estimate the prey and bdelloplast populations for a wide range of PPRs. PMID:24272279

  2. Phase diagram of a cyclic predator-prey model with neutral-pair exchange.

    PubMed

    Guisoni, Nara C; Loscar, Ernesto S; Girardi, Mauricio

    2013-08-01

    In this paper we obtain the phase diagram of a four-species predator-prey lattice model by using the proposed gradient method. We consider cyclic transitions between consecutive states, representing invasion or predation, and allowed the exchange between neighboring neutral pairs. By applying a gradient in the invasion rate parameter one can see, in the same simulation, the presence of two symmetric absorbing phases, composed by neutral pairs, and an active phase that includes all four species. In this sense, the study of a single-valued interface and its fluctuations give the critical point of the irreversible phase transition and the corresponding universality classes. Also, the consideration of a multivalued interface and its fluctuations bring the percolation threshold. We show that the model presents two lines of irreversible first-order phase transition between the two absorbing phases and the active phase. Depending on the value of the system parameters, these lines can converge into a triple point, which is the beginning of a first-order irreversible line between the two absorbing phases, or end in two critical points belonging to the directed percolation universality class. Standard simulations for some characteristic values of the parameters confirm the order of the transitions as determined by the gradient method. Besides, below the triple point the model presents two standard percolation lines in the active phase and above a first-order percolation transition as already found in other similar models.

  3. A predator-prey model with diseases in both prey and predator

    NASA Astrophysics Data System (ADS)

    Gao, Xubin; Pan, Qiuhui; He, Mingfeng; Kang, Yibin

    2013-12-01

    In this paper, we present and analyze a predator-prey model, in which both predator and prey can be infected. Each of the predator and prey is divided into two categories, susceptible and infected. The epidemics cannot be transmitted between prey and predator by predation. The predation ability of susceptible predators is stronger than infected ones. Likewise, it is more difficult to catch a susceptible prey than an infected one. And the diseases cannot be hereditary in both of the predator and prey populations. Based on the assumptions above, we find that there are six equilibrium points in this model. Using the base reproduction number, we discuss the stability of the equilibrium points qualitatively. Then both of the local and global stabilities of the equilibrium points are analyzed quantitatively by mathematical methods. We provide numerical results to discuss some interesting biological cases that our model exhibits. Lastly, we discuss how the infectious rates affect the stability, and how the other parameters work in the five possible cases within this model.

  4. Testing predator-prey theory using broad-scale manipulations and independent validation.

    PubMed

    Serrouya, Robert; McLellan, Bruce N; Boutin, Stan

    2015-11-01

    A robust test of ecological theory is to gauge the predictive accuracy of general relationships parameterized from multiple systems but applied to a new area. To address this goal, we used an ecosystem-level experiment to test predator-prey theory by manipulating prey abundance to determine whether predation was density dependent, density independent, compensatory or depensatory (inversely density dependent) on prey populations. Understanding the nature of predation is of primary importance in community ecology because it establishes whether predation has little effect on prey abundance (compensatory), whether it promotes coexistence (density dependent) and reduces the equilibrium of prey (density independent) or whether it can be destabilizing (depensatory). We used theoretical predictions consisting of functional and numerical equations parameterized independently from meta-analyses on wolves (Canis lupus) and moose (Alces alces), but applied to our specific wolf-moose system. Predictions were tested by experimentally reducing moose abundance across 6500 km(2) as a novel way of evaluating the nature of predation. Depensatory predation of wolves on moose was the best explanation of the population dynamic - a mechanism that has been hypothesized to occur but has rarely been evaluated. Adding locally obtained kill rates and numerical estimates to the independent data provided no benefit to model predictions, suggesting that the theory was robust to local variation. These findings have critical implications for any organism that is preyed upon but that also has, or will be, subject to increased human exploitation or perturbations from environmental change. If depensatory predation is not accounted for in harvest models, predicted yields will be excessive and lead to further population decline. PMID:26101058

  5. Characterization of multiple spiral wave dynamics as a stochastic predator-prey system

    NASA Astrophysics Data System (ADS)

    Otani, Niels F.; Mo, Alisa; Mannava, Sandeep; Fenton, Flavio H.; Cherry, Elizabeth M.; Luther, Stefan; Gilmour, Robert F., Jr.

    2008-08-01

    A perspective on systems containing many action potential waves that, individually, are prone to spiral wave breakup is proposed. The perspective is based on two quantities, “predator” and “prey,” which we define as the fraction of the system in the excited state and in the excitable but unexcited state, respectively. These quantities exhibited a number of properties in both simulations and fibrillating canine cardiac tissue that were found to be consistent with a proposed theory that assumes the existence of regions we call “domains of influence,” each of which is associated with the activity of one action potential wave. The properties include (i) a propensity to rotate in phase space in the same sense as would be predicted by the standard Volterra-Lotka predator-prey equations, (ii) temporal behavior ranging from near periodic oscillation at a frequency close to the spiral wave rotation frequency (“type-1” behavior) to more complex oscillatory behavior whose power spectrum is composed of a range of frequencies both above and, especially, below the spiral wave rotation frequency (“type-2” behavior), and (iii) a strong positive correlation between the periods and amplitudes of the oscillations of these quantities. In particular, a rapid measure of the amplitude was found to scale consistently as the square root of the period in data taken from both simulations and optical mapping experiments. Global quantities such as predator and prey thus appear to be useful in the study of multiple spiral wave systems, facilitating the posing of new questions, which in turn may help to provide greater understanding of clinically important phenomena such as ventricular fibrillation.

  6. Testing predator-prey theory using broad-scale manipulations and independent validation.

    PubMed

    Serrouya, Robert; McLellan, Bruce N; Boutin, Stan

    2015-11-01

    A robust test of ecological theory is to gauge the predictive accuracy of general relationships parameterized from multiple systems but applied to a new area. To address this goal, we used an ecosystem-level experiment to test predator-prey theory by manipulating prey abundance to determine whether predation was density dependent, density independent, compensatory or depensatory (inversely density dependent) on prey populations. Understanding the nature of predation is of primary importance in community ecology because it establishes whether predation has little effect on prey abundance (compensatory), whether it promotes coexistence (density dependent) and reduces the equilibrium of prey (density independent) or whether it can be destabilizing (depensatory). We used theoretical predictions consisting of functional and numerical equations parameterized independently from meta-analyses on wolves (Canis lupus) and moose (Alces alces), but applied to our specific wolf-moose system. Predictions were tested by experimentally reducing moose abundance across 6500 km(2) as a novel way of evaluating the nature of predation. Depensatory predation of wolves on moose was the best explanation of the population dynamic - a mechanism that has been hypothesized to occur but has rarely been evaluated. Adding locally obtained kill rates and numerical estimates to the independent data provided no benefit to model predictions, suggesting that the theory was robust to local variation. These findings have critical implications for any organism that is preyed upon but that also has, or will be, subject to increased human exploitation or perturbations from environmental change. If depensatory predation is not accounted for in harvest models, predicted yields will be excessive and lead to further population decline.

  7. Predator-Prey Model for Haloes in Saturn’s Rings

    NASA Astrophysics Data System (ADS)

    Esposito, Larry W.; Madhusudhanan, P.; Colwell, J. E.; Bradley, E.; Sremcevic, M.

    2013-10-01

    Particles in Saturn’s rings have a tripartite nature: (1) a broad distribution of fragments from the disruption of a previous moon that accrete into (2) transient aggregates, resembling piles of rubble, covered by a (3) regolith of smaller grains that result from collisions and meteoritic grinding. Evidence for this triple architecture of ring particles comes from a multitude of Cassini observations. In a number of ring locations (including Saturn’s F ring, the shepherded outer edges of rings A and B and at the locations of the strongest density waves) aggregation and dis-aggregation are operating now. ISS, VIMS, UVIS spectroscopy and occultations show haloes around the strongest density waves. Based on a predator-prey model for ring dynamics, we offer the following explanation: 1. Cyclic velocity changes cause the perturbed regions to reach higher collision speeds at some orbital phases, which preferentially removes small regolith particles; 2. This forms a bright halo around the ILR, if the forcing is strong enough; 3. Surrounding particles diffuse back too slowly to erase the effect; they diffuse away to form the halo. The most rapid time scale is for forcing/aggregate growth/disaggregation; then irreversible regolith erosion; diffusion and/or ballistic transport; and slowest, meteoritic pollution/darkening. We observe both smaller and larger particles at perturbed regions. Straw, UVIS power spectral analysis, kittens and equinox objects show the prey (mass aggregates); while the haloes’ VIMS spectral signature, correlation length and excess variance are created by the predators (velocity dispersion) in regions stirred in the rings. Moon forcing triggers aggregation to create longer-lived aggregates that protect their interiors from meteoritic darkening and recycle the ring material to maintain the current purity of the rings. It also provides a mechanism for creation of new moons at resonance locations in the Roche zone, as proposed by Charnoz etal and

  8. Harvesting creates ecological traps: consequences of invisible mortality risks in predator-prey metacommunities.

    PubMed

    Abrams, Peter A; Ruokolainen, Lasse; Shuter, Brian J; McCann, Kevin S

    2012-02-01

    Models of two-patch predator-prey metacommunities are used to explore how the global predator population changes in response to additional mortality in one of the patches. This could describe the dynamics of a predator in an environment that includes a refuge area where that predator is protected and a spatially distinct ("risky") area where it is harvested. The predator's movement is based on its perceived fitness in the two patches, but the risk from the additional mortality is potentially undetectable; this often occurs when the mortality is from human harvesting or from a novel type of top predator. Increases in undetected mortality in the risky area can produce an abrupt collapse of either the refuge population or of the entire predator population when the mortality rate exceeds a threshold level. This is due to the attraction of the risky patch, which has abundant prey due to its high predator mortality. Extinction of the refuge predator population does not occur when the refuge patch has a higher maximum per capita predator growth rate than the exploited patch because the refuge is then more attractive when the predator is rare. The possibility of abrupt extinction of one or both patches from high densities in response to a small increase in harvest is often associated with alternative states. In such cases, large reductions in mortality may be needed to avoid extinction in a collapsing predator population, or to reestablish an extinct population. Our analysis provides a potential explanation for sudden collapses of harvested populations, and it argues for more consideration of adaptive movement in designing protected areas.

  9. Characterization of multiple spiral wave dynamics as a stochastic predator-prey system.

    PubMed

    Otani, Niels F; Mo, Alisa; Mannava, Sandeep; Fenton, Flavio H; Cherry, Elizabeth M; Luther, Stefan; Gilmour, Robert F

    2008-08-01

    A perspective on systems containing many action potential waves that, individually, are prone to spiral wave breakup is proposed. The perspective is based on two quantities, "predator" and "prey," which we define as the fraction of the system in the excited state and in the excitable but unexcited state, respectively. These quantities exhibited a number of properties in both simulations and fibrillating canine cardiac tissue that were found to be consistent with a proposed theory that assumes the existence of regions we call "domains of influence," each of which is associated with the activity of one action potential wave. The properties include (i) a propensity to rotate in phase space in the same sense as would be predicted by the standard Volterra-Lotka predator-prey equations, (ii) temporal behavior ranging from near periodic oscillation at a frequency close to the spiral wave rotation frequency ("type-1" behavior) to more complex oscillatory behavior whose power spectrum is composed of a range of frequencies both above and, especially, below the spiral wave rotation frequency ("type-2" behavior), and (iii) a strong positive correlation between the periods and amplitudes of the oscillations of these quantities. In particular, a rapid measure of the amplitude was found to scale consistently as the square root of the period in data taken from both simulations and optical mapping experiments. Global quantities such as predator and prey thus appear to be useful in the study of multiple spiral wave systems, facilitating the posing of new questions, which in turn may help to provide greater understanding of clinically important phenomena such as ventricular fibrillation. PMID:18850871

  10. Discovering the Power of Individual-Based Modelling in Teaching and Learning: The Study of a Predator-Prey System

    NASA Astrophysics Data System (ADS)

    Ginovart, Marta

    2014-08-01

    The general aim is to promote the use of individual-based models (biological agent-based models) in teaching and learning contexts in life sciences and to make their progressive incorporation into academic curricula easier, complementing other existing modelling strategies more frequently used in the classroom. Modelling activities for the study of a predator-prey system for a mathematics classroom in the first year of an undergraduate program in biosystems engineering have been designed and implemented. These activities were designed to put two modelling approaches side by side, an individual-based model and a set of ordinary differential equations. In order to organize and display this, a system with wolves and sheep in a confined domain was considered and studied. With the teaching material elaborated and a computer to perform the numerical resolutions involved and the corresponding individual-based simulations, the students answered questions and completed exercises to achieve the learning goals set. Students' responses regarding the modelling of biological systems and these two distinct methodologies applied to the study of a predator-prey system were collected via questionnaires, open-ended queries and face-to-face dialogues. Taking into account the positive responses of the students when they were doing these activities, it was clear that using a discrete individual-based model to deal with a predator-prey system jointly with a set of ordinary differential equations enriches the understanding of the modelling process, adds new insights and opens novel perspectives of what can be done with computational models versus other models. The complementary views given by the two modelling approaches were very well assessed by students.

  11. Existence and stability of periodic solution of a Lotka-Volterra predator-prey model with state dependent impulsive effects

    NASA Astrophysics Data System (ADS)

    Nie, Linfei; Peng, Jigen; Teng, Zhidong; Hu, Lin

    2009-02-01

    According to biological and chemical control strategy for pest, we investigate the dynamic behavior of a Lotka-Volterra predator-prey state-dependent impulsive system by releasing natural enemies and spraying pesticide at different thresholds. By using Poincaré map and the properties of the Lambert W function, we prove that the sufficient conditions for the existence and stability of semi-trivial solution and positive periodic solution. Numerical simulations are carried out to illustrate the feasibility of our main results.

  12. Dynamic of a delayed predator-prey model with birth pulse and impulsive harvesting in a polluted environment

    NASA Astrophysics Data System (ADS)

    Wang, Xiaohong; Jia, Jianwen

    2015-03-01

    In this paper, we propose a delayed predator-prey model with birth pulse and impulsive harvesting in a polluted environment. Existence conditions of the predator-extinction periodic solution are derived by developing the discrete dynamical system, which is determined by the stroboscopic map. Further, we discuss the global attractivity of predator-extinction periodic solution and permanence of the system, and obtain the threshold conditions. The results provide a dependable theoretical strategies to protect population from extinction in a polluted environment. Finally, the numerical simulations are presented for verifying the theoretical conclusions.

  13. Global Hopf Bifurcation on Two-Delays Leslie-Gower Predator-Prey System with a Prey Refuge

    PubMed Central

    Liu, Qingsong; Lin, Yiping; Cao, Jingnan

    2014-01-01

    A modified Leslie-Gower predator-prey system with two delays is investigated. By choosing τ1 and τ2 as bifurcation parameters, we show that the Hopf bifurcations occur when time delay crosses some critical values. Moreover, we derive the equation describing the flow on the center manifold; then we give the formula for determining the direction of the Hopf bifurcation and the stability of bifurcating periodic solutions. Numerical simulations are carried out to illustrate the theoretical results and chaotic behaviors are observed. Finally, using a global Hopf bifurcation theorem for functional differential equations, we show the global existence of the periodic solutions. PMID:24803953

  14. Global hopf bifurcation on two-delays leslie-gower predator-prey system with a prey refuge.

    PubMed

    Liu, Qingsong; Lin, Yiping; Cao, Jingnan

    2014-01-01

    A modified Leslie-Gower predator-prey system with two delays is investigated. By choosing τ 1 and τ 2 as bifurcation parameters, we show that the Hopf bifurcations occur when time delay crosses some critical values. Moreover, we derive the equation describing the flow on the center manifold; then we give the formula for determining the direction of the Hopf bifurcation and the stability of bifurcating periodic solutions. Numerical simulations are carried out to illustrate the theoretical results and chaotic behaviors are observed. Finally, using a global Hopf bifurcation theorem for functional differential equations, we show the global existence of the periodic solutions.

  15. A predator-prey model for moon-triggered clumping in Saturn's rings

    NASA Astrophysics Data System (ADS)

    Esposito, Larry W.; Albers, Nicole; Meinke, Bonnie K.; Sremčević, Miodrag; Madhusudhanan, Prasanna; Colwell, Joshua E.; Jerousek, Richard G.

    2012-01-01

    UVIS occultation data show clumping in Saturn's F ring and at the B ring outer edge, indicating aggregation and disaggregation at these locations that are perturbed by Prometheus and by Mimas. The inferred timescales range from hours to months. Occultation profiles of the edge show wide variability, indicating perturbations by local mass aggregations. Structure near the B ring edge is seen in power spectral analysis at scales 200-2000 m. Similar structure is also seen at the strongest density waves, with significance increasing with resonance strength. For the B ring outer edge, the strongest structure is seen at longitudes 90° and 270° relative to Mimas. This indicates a direct relation between the moon and the ring clumping. We propose that the collective behavior of the ring particles resembles a predator-prey system: the mean aggregate size is the prey, which feeds the velocity dispersion; conversely, increasing dispersion breaks up the aggregates. Moons may trigger clumping by streamline crowding, which reduces the relative velocity, leading to more aggregation and more clumping. Disaggregation may follow from disruptive collisions or tidal shedding as the clumps stir the relative velocity. For realistic values of the parameters this yields a limit cycle behavior, as for the ecology of foxes and hares or the "boom-bust" economic cycle. Solving for the long-term behavior of this forced system gives a periodic response at the perturbing frequency, with a phase lag roughly consistent with the UVIS occultation measurements. We conclude that the agitation by the moons in the F ring and at the B ring outer edge drives aggregation and disaggregation in the forcing frame. This agitation of the ring material may also allow fortuitous formation of solid objects from the temporary clumps, via stochastic processes like compaction, adhesion, sintering or reorganization that drives the denser parts of the aggregate to the center or ejects the lighter elements. Any of

  16. Time optimal control of an additional food provided predator-prey system with applications to pest management and biological conservation.

    PubMed

    Srinivasu, P D N; Prasad, B S R V

    2010-04-01

    Use of additional food has been widely recognized by experimental scientists as one of the important tools for biological control such as species conservation and pest management. The quality and quantity of additional food supplied to the predators is known to play a vital role in the controllability of the system. The present study is continuation of a previous work that highlights the importance of quality and quantity of the additional food in the dynamics of a predator-prey system in the context of biological control. In this article the controllability of the predator-prey system is analyzed by considering inverse of quality of the additional food as the control variable. Control strategies are offered to steer the system from a given initial state to a required terminal state in a minimum time by formulating Mayer problem of optimal control. It is observed that an optimal strategy is a combination of bang-bang controls and could involve multiple switches. Properties of optimal paths are derived using necessary conditions for Mayer problem. In the light of the results evolved in this work it is possible to eradicate the prey from the eco-system in the minimum time by providing the predator with high quality additional food, which is relevant in the pest management. In the perspective of biological conservation this study highlights the possibilities to drive the state to an admissible interior equilibrium (irrespective of its stability nature) of the system in a minimum time.

  17. Something old, something new: auxin and strigolactone interact in the ancient mycorrhizal symbiosis.

    PubMed

    Foo, Eloise

    2013-04-01

    Arbuscular mycorrhizal symbiosis, formed between more than 80% of land plants and fungi from the phylum Glomeromycota, is an ancient association that is believed to have evolved as plants moved onto land more than 400 mya. Similarly ancient, the plant hormones auxin and strigolactone are thought to have been present in the plant lineage since before the divergence of the bryophytes in the case of auxin and before the colonisation of land in the case of strigolactones. The discovery of auxin in the 1930s predates the discovery of strigolactones as a plant hormone in 2008 by over 70 y. Recent studies in pea suggest that these two signals may interact to regulate mycorrhizal symbiosis. Furthermore, the first quantitative studies are presented that show that low auxin content of the root is correlated with low strigolactone production, an interaction that has implications for how these plant hormones regulate several developmental programs including shoot branching, secondary growth and root development. With recent advances in our understanding of auxin and strigolactone biosynthesis, together with the discovery of the fungal signals that activate the plant host, the stage is set for real breakthroughs in our understanding of the interactions between plant and fungal signals in mycorrhizal symbiosis.

  18. Something old, something new: auxin and strigolactone interact in the ancient mycorrhizal symbiosis.

    PubMed

    Foo, Eloise

    2013-04-01

    Arbuscular mycorrhizal symbiosis, formed between more than 80% of land plants and fungi from the phylum Glomeromycota, is an ancient association that is believed to have evolved as plants moved onto land more than 400 mya. Similarly ancient, the plant hormones auxin and strigolactone are thought to have been present in the plant lineage since before the divergence of the bryophytes in the case of auxin and before the colonisation of land in the case of strigolactones. The discovery of auxin in the 1930s predates the discovery of strigolactones as a plant hormone in 2008 by over 70 y. Recent studies in pea suggest that these two signals may interact to regulate mycorrhizal symbiosis. Furthermore, the first quantitative studies are presented that show that low auxin content of the root is correlated with low strigolactone production, an interaction that has implications for how these plant hormones regulate several developmental programs including shoot branching, secondary growth and root development. With recent advances in our understanding of auxin and strigolactone biosynthesis, together with the discovery of the fungal signals that activate the plant host, the stage is set for real breakthroughs in our understanding of the interactions between plant and fungal signals in mycorrhizal symbiosis. PMID:23333973

  19. Detecting predation and scavenging by DNA gut-content analysis: a case study using a soil insect predator-prey system.

    PubMed

    Juen, Anita; Traugott, Michael

    2005-01-01

    White grubs (larvae of Coleoptera: Scarabaeidae) are abundant in below-ground systems and can cause considerable damage to a wide variety of crops by feeding on roots. White grub populations may be controlled by natural enemies, but the predator guild of the European species is barely known. Trophic interactions within soil food webs are difficult to study with conventional methods. Therefore, a polymerase chain reaction (PCR)-based approach was developed to investigate, for the first time, a soil insect predator-prey system. Can, however, highly sensitive detection methods identify carrion prey in predators, as has been shown for fresh prey? Fresh Melolontha melolontha (L.) larvae and 1- to 9-day-old carcasses were presented to Poecilus versicolor Sturm larvae. Mitochondrial cytochrome oxidase subunit I fragments of the prey, 175, 327 and 387 bp long, were detectable in 50% of the predators 32 h after feeding. Detectability decreased to 18% when a 585 bp sequence was amplified. Meal size and digestion capacity of individual predators had no influence on prey detection. Although prey consumption was negatively correlated with cadaver age, carrion prey could be detected by PCR as efficiently as fresh prey irrespective of carrion age. This is the first proof that PCR-based techniques are highly efficient and sensitive, both in fresh and carrion prey detection. Thus, if active predation has to be distinguished from scavenging, then additional approaches are needed to interpret the picture of prey choice derived by highly sensitive detection methods. PMID:15517409

  20. Hypoxic refuges, predator-prey interactions and habitat selection by fishes.

    PubMed

    Hedges, K J; Abrahams, M V

    2015-01-01

    Localized hypoxic habitats were created in Delta Marsh, Manitoba, Canada to determine the potential of regions of moderate hypoxia to act as refuges for forage fishes from piscine predators. Minnow traps and giving-up density (GUD) plates (plexiglas plates covered with trout crumble and fine gravel) were used to assess habitat use and perceived habitat quality for forage fishes, respectively, while passive integrated transponder tags provided data on habitat use by predator species to assess the level of predation risk. Data were collected both before and after a hypoxia manipulation (2-3 mg l(-1) dissolved oxygen, DO) to create a before-after control-effect style experiment. Fathead minnows Pimephales promelas were more abundant and consumed more food from GUD plates in hypoxic bays after the DO manipulation, indicating hypoxic locations were perceived as higher quality, lower-risk habitats. The frequency of predator visits was not consistently affected. The duration of visits, and therefore the total time spent in these habitats, however, was significantly shorter. These predator data, combined with the prey information, are consistent with the hypothesis that hypoxic regions function as predator refuges. The refuge effect is not the result of predator exclusion, however; instead predators are rendered less capable of foraging and pose less of a threat in hypoxic locations. PMID:25557430

  1. Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning.

    PubMed

    Fais, A; Johnson, M; Wilson, M; Aguilar Soto, N; Madsen, P T

    2016-01-01

    The sperm whale carries a hypertrophied nose that generates powerful clicks for long-range echolocation. However, it remains a conundrum how this bizarrely shaped apex predator catches its prey. Several hypotheses have been advanced to propose both active and passive means to acquire prey, including acoustic debilitation of prey with very powerful clicks. Here we test these hypotheses by using sound and movement recording tags in a fine-scale study of buzz sequences to relate the acoustic behaviour of sperm whales with changes in acceleration in their head region during prey capture attempts. We show that in the terminal buzz phase, sperm whales reduce inter-click intervals and estimated source levels by 1-2 orders of magnitude. As a result, received levels at the prey are more than an order of magnitude below levels required for debilitation, precluding acoustic stunning to facilitate prey capture. Rather, buzzing involves high-frequency, low amplitude clicks well suited to provide high-resolution biosonar updates during the last stages of capture. The high temporal resolution helps to guide motor patterns during occasionally prolonged chases in which prey are eventually subdued with the aid of fast jaw movements and/or buccal suction as indicated by acceleration transients (jerks) near the end of buzzes. PMID:27340122

  2. Predator-prey interactions in the plankton: larval fish feeding on evasive copepods

    PubMed Central

    Jackson, James M.; Lenz, Petra H.

    2016-01-01

    Capture success and prey selectivity were investigated in clownfish Amphiprion ocellaris larvae using videography. Three prey types were tested using developmental stages (nauplii, copepodites and adults) of the copepod Parvocalanus crassirostris. Predatory abilities improved rapidly between days 1 and 14 post-hatch. Initially, capture success was limited to nauplii with few attacks on larger stages. Captures of copepodites were first observed at 3 dph, and of adults at 8 dph. Consistent strikes at the larger prey were observed on the day prior to successful captures (2 dph for copepodites, 7 dph for adults). Difference in capture success between nauplii and adults at 8 dph was an order of magnitude. Differences in capture success among prey types persisted but decreased to three-fold by 14 dph. Younger A. ocellaris attacked nauplii preferentially and avoided adult prey. Strike selectivity declined with age, and no selectivity was observed after 10 dph. However, numerically 50% of the ingested prey were still nauplii at 14 dph under the experimental conditions. PMID:27658849

  3. Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning

    PubMed Central

    Fais, A.; Johnson, M.; Wilson, M.; Aguilar Soto, N.; Madsen, P. T.

    2016-01-01

    The sperm whale carries a hypertrophied nose that generates powerful clicks for long-range echolocation. However, it remains a conundrum how this bizarrely shaped apex predator catches its prey. Several hypotheses have been advanced to propose both active and passive means to acquire prey, including acoustic debilitation of prey with very powerful clicks. Here we test these hypotheses by using sound and movement recording tags in a fine-scale study of buzz sequences to relate the acoustic behaviour of sperm whales with changes in acceleration in their head region during prey capture attempts. We show that in the terminal buzz phase, sperm whales reduce inter-click intervals and estimated source levels by 1–2 orders of magnitude. As a result, received levels at the prey are more than an order of magnitude below levels required for debilitation, precluding acoustic stunning to facilitate prey capture. Rather, buzzing involves high-frequency, low amplitude clicks well suited to provide high-resolution biosonar updates during the last stages of capture. The high temporal resolution helps to guide motor patterns during occasionally prolonged chases in which prey are eventually subdued with the aid of fast jaw movements and/or buccal suction as indicated by acceleration transients (jerks) near the end of buzzes. PMID:27340122

  4. Visual illusions in predator-prey interactions: birds find moving patterned prey harder to catch.

    PubMed

    Hämäläinen, Liisa; Valkonen, Janne; Mappes, Johanna; Rojas, Bibiana

    2015-09-01

    Several antipredator strategies are related to prey colouration. Some colour patterns can create visual illusions during movement (such as motion dazzle), making it difficult for a predator to capture moving prey successfully. Experimental evidence about motion dazzle, however, is still very scarce and comes only from studies using human predators capturing moving prey items in computer games. We tested a motion dazzle effect using for the first time natural predators (wild great tits, Parus major). We used artificial prey items bearing three different colour patterns: uniform brown (control), black with elongated yellow pattern and black with interrupted yellow pattern. The last two resembled colour patterns of the aposematic, polymorphic dart-poison frog Dendrobates tinctorius. We specifically tested whether an elongated colour pattern could create visual illusions when combined with straight movement. Our results, however, do not support this hypothesis. We found no differences in the number of successful attacks towards prey items with different patterns (elongated/interrupted) moving linearly. Nevertheless, both prey types were significantly more difficult to catch compared to the uniform brown prey, indicating that both colour patterns could provide some benefit for a moving individual. Surprisingly, no effect of background (complex vs. plain) was found. This is the first experiment with moving prey showing that some colour patterns can affect avian predators' ability to capture moving prey, but the mechanisms lowering the capture rate are still poorly understood.

  5. Sperm whale predator-prey interactions involve chasing and buzzing, but no acoustic stunning.

    PubMed

    Fais, A; Johnson, M; Wilson, M; Aguilar Soto, N; Madsen, P T

    2016-06-24

    The sperm whale carries a hypertrophied nose that generates powerful clicks for long-range echolocation. However, it remains a conundrum how this bizarrely shaped apex predator catches its prey. Several hypotheses have been advanced to propose both active and passive means to acquire prey, including acoustic debilitation of prey with very powerful clicks. Here we test these hypotheses by using sound and movement recording tags in a fine-scale study of buzz sequences to relate the acoustic behaviour of sperm whales with changes in acceleration in their head region during prey capture attempts. We show that in the terminal buzz phase, sperm whales reduce inter-click intervals and estimated source levels by 1-2 orders of magnitude. As a result, received levels at the prey are more than an order of magnitude below levels required for debilitation, precluding acoustic stunning to facilitate prey capture. Rather, buzzing involves high-frequency, low amplitude clicks well suited to provide high-resolution biosonar updates during the last stages of capture. The high temporal resolution helps to guide motor patterns during occasionally prolonged chases in which prey are eventually subdued with the aid of fast jaw movements and/or buccal suction as indicated by acceleration transients (jerks) near the end of buzzes.

  6. Mammalian predator-prey interaction in a fragmented landscape: weasels and voles.

    PubMed

    Haapakoski, Marko; Sundell, Janne; Ylönen, Hannu

    2013-12-01

    The relationship between predators and prey is thought to change due to habitat loss and fragmentation, but patterns regarding the direction of the effect are lacking. The common prediction is that specialized predators, often more dependent on a certain habitat type, should be more vulnerable to habitat loss compared to generalist predators, but actual fragmentation effects are unknown. If a predator is small and vulnerable to predation by other larger predators through intra-guild predation, habitat fragmentation will similarly affect both the prey and the small predator. In this case, the predator is predicted to behave similarly to the prey and avoid open and risky areas. We studied a specialist predator's, the least weasel, Mustela nivalis nivalis, spacing behavior and hunting efficiency on bank voles, Myodes glareolus, in an experimentally fragmented habitat. The habitat consisted of either one large habitat patch (non-fragmented) or four small habitat patches (fragmented) with the same total area. The study was replicated in summer and autumn during a year with high avian predation risk for both voles and weasels. As predicted, weasels under radio-surveillance killed more voles in the non-fragmented habitat which also provided cover from avian predators during their prey search. However, this was only during autumn, when the killing rate was also generally high due to cold weather. The movement areas were the same for both sexes and both fragmentation treatments, but weasels of both sexes were more prone to take risks in crossing the open matrix in the fragmented treatment. Our results support the hypothesis that habitat fragmentation may increase the persistence of specialist predator and prey populations if predators are limited in the same habitat as their prey and they share the same risk from avian predation. PMID:23728797

  7. A plasma source driven predator-prey like mechanism as a potential cause of spiraling intermittencies in linear plasma devices

    NASA Astrophysics Data System (ADS)

    Reiser, D.; Ohno, N.; Tanaka, H.; Vela, L.

    2014-03-01

    Three-dimensional global drift fluid simulations are carried out to analyze coherent plasma structures appearing in the NAGDIS-II linear device (nagoya divertor plasma Simulator-II). The numerical simulations reproduce several features of the intermittent spiraling structures observed, for instance, statistical properties, rotation frequency, and the frequency of plasma expulsion. The detailed inspection of the three-dimensional plasma dynamics allows to identify the key mechanism behind the formation of these intermittent events. The resistive coupling between electron pressure and parallel electric field in the plasma source region gives rise to a quasilinear predator-prey like dynamics where the axisymmetric mode represents the prey and the spiraling structure with low azimuthal mode number represents the predator. This interpretation is confirmed by a reduced one-dimensional quasilinear model derived on the basis of the findings in the full three-dimensional simulations. The dominant dynamics reveals certain similarities to the classical Lotka-Volterra cycle.

  8. The dynamics of a Lotka-Volterra predator-prey model with state dependent impulsive harvest for predator.

    PubMed

    Nie, Linfei; Teng, Zhidong; Hu, Lin; Peng, Jigen

    2009-11-01

    According to the economic and biological aspects of renewable resources management, we propose a Lotka-Volterra predator-prey model with state dependent impulsive harvest. By using the Poincaré map, some conditions for the existence and stability of positive periodic solution are obtained. Moreover, we show that there is no periodic solution with order larger than or equal to three under some conditions. Numerical results are carried out to illustrate the feasibility of our main results. The bifurcation diagrams of periodic solutions are obtained by using the numerical simulations, and it is shown that a chaotic solution is generated via a cascade of period-doubling bifurcations, which implies that the presence of pulses makes the dynamic behavior more complex.

  9. A plasma source driven predator-prey like mechanism as a potential cause of spiraling intermittencies in linear plasma devices

    SciTech Connect

    Reiser, D.; Ohno, N.; Tanaka, H.; Vela, L.

    2014-03-15

    Three-dimensional global drift fluid simulations are carried out to analyze coherent plasma structures appearing in the NAGDIS-II linear device (nagoya divertor plasma Simulator-II). The numerical simulations reproduce several features of the intermittent spiraling structures observed, for instance, statistical properties, rotation frequency, and the frequency of plasma expulsion. The detailed inspection of the three-dimensional plasma dynamics allows to identify the key mechanism behind the formation of these intermittent events. The resistive coupling between electron pressure and parallel electric field in the plasma source region gives rise to a quasilinear predator-prey like dynamics where the axisymmetric mode represents the prey and the spiraling structure with low azimuthal mode number represents the predator. This interpretation is confirmed by a reduced one-dimensional quasilinear model derived on the basis of the findings in the full three-dimensional simulations. The dominant dynamics reveals certain similarities to the classical Lotka-Volterra cycle.

  10. Bifurcation analysis and dimension reduction of a predator-prey model for the L-H transition

    SciTech Connect

    Dam, Magnus; Brøns, Morten; Juul Rasmussen, Jens; Naulin, Volker; Xu, Guosheng

    2013-10-15

    The L-H transition denotes a shift to an improved confinement state of a toroidal plasma in a fusion reactor. A model of the L-H transition is required to simulate the time dependence of tokamak discharges that include the L-H transition. A 3-ODE predator-prey type model of the L-H transition is investigated with bifurcation theory of dynamical systems. The analysis shows that the model contains three types of transitions: an oscillating transition, a sharp transition with hysteresis, and a smooth transition. The model is recognized as a slow-fast system. A reduced 2-ODE model consisting of the full model restricted to the flow on the critical manifold is found to contain all the same dynamics as the full model. This means that all the dynamics in the system is essentially 2-dimensional, and a minimal model of the L-H transition could be a 2-ODE model.

  11. Threshold of coexistence and critical behavior of a predator-prey stochastic model in a fractal landscape

    NASA Astrophysics Data System (ADS)

    Argolo, C.; Barros, P.; Tomé, T.; Arashiro, E.; Gleria, Iram; Lyra, M. L.

    2016-08-01

    We investigate a stochastic lattice model describing a predator-prey system in a fractal scale-free landscape, mimicked by the fractal Sierpinski carpet. We determine the threshold of species coexistence, that is, the critical phase boundary related to the transition between an active state, where both species coexist and an absorbing state where one of the species is extinct. We show that the predators must live longer in order to persist in a fractal habitat. We further performed a finite-size scaling analysis in the vicinity of the absorbing-state phase transition to compute a set of stationary and dynamical critical exponents. Our results indicate that the transition belongs to the directed percolation universality class exhibited by the usual contact process model on the same fractal landscape.

  12. Bifurcation analysis and dimension reduction of a predator-prey model for the L-H transition

    NASA Astrophysics Data System (ADS)

    Dam, Magnus; Brøns, Morten; Juul Rasmussen, Jens; Naulin, Volker; Xu, Guosheng

    2013-10-01

    The L-H transition denotes a shift to an improved confinement state of a toroidal plasma in a fusion reactor. A model of the L-H transition is required to simulate the time dependence of tokamak discharges that include the L-H transition. A 3-ODE predator-prey type model of the L-H transition is investigated with bifurcation theory of dynamical systems. The analysis shows that the model contains three types of transitions: an oscillating transition, a sharp transition with hysteresis, and a smooth transition. The model is recognized as a slow-fast system. A reduced 2-ODE model consisting of the full model restricted to the flow on the critical manifold is found to contain all the same dynamics as the full model. This means that all the dynamics in the system is essentially 2-dimensional, and a minimal model of the L-H transition could be a 2-ODE model.

  13. The dynamics of a Lotka-Volterra predator-prey model with state dependent impulsive harvest for predator.

    PubMed

    Nie, Linfei; Teng, Zhidong; Hu, Lin; Peng, Jigen

    2009-11-01

    According to the economic and biological aspects of renewable resources management, we propose a Lotka-Volterra predator-prey model with state dependent impulsive harvest. By using the Poincaré map, some conditions for the existence and stability of positive periodic solution are obtained. Moreover, we show that there is no periodic solution with order larger than or equal to three under some conditions. Numerical results are carried out to illustrate the feasibility of our main results. The bifurcation diagrams of periodic solutions are obtained by using the numerical simulations, and it is shown that a chaotic solution is generated via a cascade of period-doubling bifurcations, which implies that the presence of pulses makes the dynamic behavior more complex. PMID:19523503

  14. Interaction between host genotype and environmental conditions affects bacterial density in Wolbachia symbiosis.

    PubMed

    Mouton, Laurence; Henri, Hélène; Charif, Delphine; Boulétreau, Michel; Vavre, Fabrice

    2007-04-22

    Regulation of microbial population density is a necessity in stable symbiotic interactions. In Wolbachia symbiosis, both bacterial and host genotypes are involved in density regulation, but environmental factors may also affect bacterial population density. Here, we studied the interaction between three strains of Wolbachia in two divergent homozygous lines of the wasp Leptopilina heterotoma at two different temperatures. Wolbachia density varied between the two host genotypes at only one temperature. Moreover, at this temperature, reciprocal-cross F1 insects displayed identical Wolbachia densities, which were intermediate between the densities in the two parental lines. While these findings confirm that the host genotype plays an important role in Wolbachia density, they also highlight its interaction with environmental conditions, making possible the evolution of local adaptations for the regulation of Wolbachia density. PMID:17251124

  15. Predicting prey population dynamics from kill rate, predation rate and predator-prey ratios in three wolf-ungulate systems.

    PubMed

    Vucetich, John A; Hebblewhite, Mark; Smith, Douglas W; Peterson, Rolf O

    2011-11-01

    1. Predation rate (PR) and kill rate are both fundamental statistics for understanding predation. However, relatively little is known about how these statistics relate to one another and how they relate to prey population dynamics. We assess these relationships across three systems where wolf-prey dynamics have been observed for 41 years (Isle Royale), 19 years (Banff) and 12 years (Yellowstone). 2. To provide context for this empirical assessment, we developed theoretical predictions of the relationship between kill rate and PR under a broad range of predator-prey models including predator-dependent, ratio-dependent and Lotka-Volterra dynamics. 3. The theoretical predictions indicate that kill rate can be related to PR in a variety of diverse ways (e.g. positive, negative, unrelated) that depend on the nature of predator-prey dynamics (e.g. structure of the functional response). These simulations also suggested that the ratio of predator-to-prey is a good predictor of prey growth rate. That result motivated us to assess the empirical relationship between the ratio and prey growth rate for each of the three study sites. 4. The empirical relationships indicate that PR is not well predicted by kill rate, but is better predicted by the ratio of predator-to-prey. Kill rate is also a poor predictor of prey growth rate. However, PR and ratio of predator-to-prey each explained significant portions of variation in prey growth rate for two of the three study sites. 5. Our analyses offer two general insights. First, Isle Royale, Banff and Yellowstone are similar insomuch as they all include wolves preying on large ungulates. However, they also differ in species diversity of predator and prey communities, exploitation by humans and the role of dispersal. Even with the benefit of our analysis, it remains difficult to judge whether to be more impressed by the similarities or differences. This difficulty nicely illustrates a fundamental property of ecological

  16. Predicting prey population dynamics from kill rate, predation rate and predator-prey ratios in three wolf-ungulate systems.

    PubMed

    Vucetich, John A; Hebblewhite, Mark; Smith, Douglas W; Peterson, Rolf O

    2011-11-01

    1. Predation rate (PR) and kill rate are both fundamental statistics for understanding predation. However, relatively little is known about how these statistics relate to one another and how they relate to prey population dynamics. We assess these relationships across three systems where wolf-prey dynamics have been observed for 41 years (Isle Royale), 19 years (Banff) and 12 years (Yellowstone). 2. To provide context for this empirical assessment, we developed theoretical predictions of the relationship between kill rate and PR under a broad range of predator-prey models including predator-dependent, ratio-dependent and Lotka-Volterra dynamics. 3. The theoretical predictions indicate that kill rate can be related to PR in a variety of diverse ways (e.g. positive, negative, unrelated) that depend on the nature of predator-prey dynamics (e.g. structure of the functional response). These simulations also suggested that the ratio of predator-to-prey is a good predictor of prey growth rate. That result motivated us to assess the empirical relationship between the ratio and prey growth rate for each of the three study sites. 4. The empirical relationships indicate that PR is not well predicted by kill rate, but is better predicted by the ratio of predator-to-prey. Kill rate is also a poor predictor of prey growth rate. However, PR and ratio of predator-to-prey each explained significant portions of variation in prey growth rate for two of the three study sites. 5. Our analyses offer two general insights. First, Isle Royale, Banff and Yellowstone are similar insomuch as they all include wolves preying on large ungulates. However, they also differ in species diversity of predator and prey communities, exploitation by humans and the role of dispersal. Even with the benefit of our analysis, it remains difficult to judge whether to be more impressed by the similarities or differences. This difficulty nicely illustrates a fundamental property of ecological

  17. Role of quantity of additional food to predators as a control in predator-prey systems with relevance to pest management and biological conservation.

    PubMed

    Srinivasu, P D N; Prasad, B S R V

    2011-10-01

    Necessity to understand the role of additional food as a tool in biological control programs is being increasingly felt, particularly due to its eco-friendly nature. A thorough mathematical analysis in this direction revealed the vital role of quality and quantity of the additional food in the controllability of the predator-prey systems. In this article controllability of the additional food--provided predator-prey system is studied from perspectives of pest eradication and biological conservation. Time optimal paths have been constructed to drive the state of the system to a desired terminal state by choosing quantity of the additional food as control variable. The theory developed in this article has been illustrated by solving problems related to pest eradication and biological conservation.

  18. Multiple positive almost periodic solutions to an impulsive non-autonomous Lotka-Volterra predator-prey system with harvesting terms

    NASA Astrophysics Data System (ADS)

    Li, Yongkun; Ye, Yuan

    2013-11-01

    In this paper, by using Mawhin's continuation theorem of coincidence degree theory, we study an impulsive non-autonomous Lotka-Volterra predator-prey system with harvesting terms and obtain some sufficient conditions for the existence of multiple positive almost periodic solutions for the system under consideration. Our results of this paper are completely new and our method used in this paper can be used to study the existence of multiple positive almost periodic solutions to other types of population systems.

  19. Fitting a predator prey model to zooplankton time-series data in the Gironde estuary (France): Ecological significance of the parameters

    NASA Astrophysics Data System (ADS)

    David, Valérie; Chardy, Pierre; Sautour, Benoît

    2006-05-01

    The relationships between the seasonal fluctuations of the copepod Eurytemora affinis and the mysid Neomysis integer were studied from observed data and experimental results, using a predator-prey model in the oligo-mesohaline area of the Gironde estuary. Mean seasonal fluctuations of abundances were derived from long term data series collected from 1978 to 2003 for both species. In situ predator-prey experiments over a seasonal cycle were used to estimate the seasonal variation of the consumption rate of N. integer on E. affinis and to verify the order of magnitude of the biological parameters given by the model. Predator-prey experiments revealed a high seasonal variation in maximum consumption rates with a mean of 56 ± 9 ind. pred -1 d -1. Maximum consumption rates were always higher for adults than for juveniles of Neomysis integer. Recorded selectivities were higher on nauplii than on copepodids + adults of Eurytemora affinis, both for the juveniles and the adults of N. integer. Neomysis integer mainly fed on meroplanktonic larvae, when they were available in higher abundances, than E. affinis in their environment. Spring increases of abundance for Eurytemora affinis copepodids + adults seemed to be mainly controlled by temperature whereas its decreasing abundance in summer was more related to Neomysis integer predation, suggesting that summer fluctuations of E. affinis abundance are probably controlled by mysid predation at summer times. Using a Lotka-Volterra predator-prey model, the seasonal peak of abundance of the mysid N. integer was well reproduced considering a predation on copepodids + adults of E. affinis, and suggested a dependence between mysid and copepod seasonal variations. However, the seasonal peak amplitude could not be explained solely by a predation on copepodids + adults or on nauplii of the copepod. Thus, N. integer is probably dependent on the seasonal fluctuations of the copepod's abundance, complementing its diet with macrophytal

  20. Permanence for a delayed periodic predator-prey model with prey dispersal in multi-patches and predator density-independent

    NASA Astrophysics Data System (ADS)

    Zhang, Long; Teng, Zhidong

    2008-02-01

    In this paper, we study two species time-delayed predator-prey Lotka-Volterra type dispersal systems with periodic coefficients, in which the prey species can disperse among n patches, while the density-independent predator species is confined to one of patches and cannot disperse. Sufficient conditions on the boundedness, permanence and existence of positive periodic solution for this systems are established. The theoretical results are confirmed by a special example and numerical simulations.

  1. Impairment of O-antigen production confers resistance to grazing in a model amoeba-cyanobacterium predator-prey system.

    PubMed

    Simkovsky, Ryan; Daniels, Emy F; Tang, Karen; Huynh, Stacey C; Golden, Susan S; Brahamsha, Bianca

    2012-10-01

    The grazing activity of predators on photosynthetic organisms is a major mechanism of mortality and population restructuring in natural environments. Grazing is also one of the primary difficulties in growing cyanobacteria and other microalgae in large, open ponds for the production of biofuels, as contaminants destroy valuable biomass and prevent stable, continuous production of biofuel crops. To address this problem, we have isolated a heterolobosean amoeba, HGG1, that grazes upon unicellular and filamentous freshwater cyanobacterial species. We have established a model predator-prey system using this amoeba and Synechococcus elongatus PCC 7942. Application of amoebae to a library of mutants of S. elongatus led to the identification of a grazer-resistant knockout mutant of the wzm ABC O-antigen transporter gene, SynPCC7942_1126. Mutations in three other genes involved in O-antigen synthesis and transport also prevented the expression of O-antigen and conferred resistance to HGG1. Complementation of these rough mutants returned O-antigen expression and susceptibility to amoebae. Rough mutants are easily identifiable by appearance, are capable of autoflocculation, and do not display growth defects under standard laboratory growth conditions, all of which are desired traits for a biofuel production strain. Thus, preventing the production of O-antigen is a pathway for producing resistance to grazing by certain amoebae.

  2. Food-web structure in relation to environmental gradients and predator-prey ratios in tank-bromeliad ecosystems.

    PubMed

    Dézerald, Olivier; Leroy, Céline; Corbara, Bruno; Carrias, Jean-François; Pélozuelo, Laurent; Dejean, Alain; Céréghino, Régis

    2013-01-01

    Little is known of how linkage patterns between species change along environmental gradients. The small, spatially discrete food webs inhabiting tank-bromeliads provide an excellent opportunity to analyse patterns of community diversity and food-web topology (connectance, linkage density, nestedness) in relation to key environmental variables (habitat size, detrital resource, incident radiation) and predators:prey ratios. We sampled 365 bromeliads in a wide range of understorey environments in French Guiana and used gut contents of invertebrates to draw the corresponding 365 connectance webs. At the bromeliad scale, habitat size (water volume) determined the number of species that constitute food-web nodes, the proportion of predators, and food-web topology. The number of species as well as the proportion of predators within bromeliads declined from open to forested habitats, where the volume of water collected by bromeliads was generally lower because of rainfall interception by the canopy. A core group of microorganisms and generalist detritivores remained relatively constant across environments. This suggests that (i) a highly-connected core ensures food-web stability and key ecosystem functions across environments, and (ii) larger deviations in food-web structures can be expected following disturbance if detritivores share traits that determine responses to environmental changes. While linkage density and nestedness were lower in bromeliads in the forest than in open areas, experiments are needed to confirm a trend for lower food-web stability in the understorey of primary forests.

  3. Food-Web Structure in Relation to Environmental Gradients and Predator-Prey Ratios in Tank-Bromeliad Ecosystems

    PubMed Central

    Dézerald, Olivier; Leroy, Céline; Corbara, Bruno; Carrias, Jean-François; Pélozuelo, Laurent; Dejean, Alain; Céréghino, Régis

    2013-01-01

    Little is known of how linkage patterns between species change along environmental gradients. The small, spatially discrete food webs inhabiting tank-bromeliads provide an excellent opportunity to analyse patterns of community diversity and food-web topology (connectance, linkage density, nestedness) in relation to key environmental variables (habitat size, detrital resource, incident radiation) and predators:prey ratios. We sampled 365 bromeliads in a wide range of understorey environments in French Guiana and used gut contents of invertebrates to draw the corresponding 365 connectance webs. At the bromeliad scale, habitat size (water volume) determined the number of species that constitute food-web nodes, the proportion of predators, and food-web topology. The number of species as well as the proportion of predators within bromeliads declined from open to forested habitats, where the volume of water collected by bromeliads was generally lower because of rainfall interception by the canopy. A core group of microorganisms and generalist detritivores remained relatively constant across environments. This suggests that (i) a highly-connected core ensures food-web stability and key ecosystem functions across environments, and (ii) larger deviations in food-web structures can be expected following disturbance if detritivores share traits that determine responses to environmental changes. While linkage density and nestedness were lower in bromeliads in the forest than in open areas, experiments are needed to confirm a trend for lower food-web stability in the understorey of primary forests. PMID:23977128

  4. A predator-prey model with a holling type I functional response including a predator mutual interference

    USGS Publications Warehouse

    Seo, G.; DeAngelis, D.L.

    2011-01-01

    The most widely used functional response in describing predator-prey relationships is the Holling type II functional response, where per capita predation is a smooth, increasing, and saturating function of prey density. Beddington and DeAngelis modified the Holling type II response to include interference of predators that increases with predator density. Here we introduce a predator-interference term into a Holling type I functional response. We explain the ecological rationale for the response and note that the phase plane configuration of the predator and prey isoclines differs greatly from that of the Beddington-DeAngelis response; for example, in having three possible interior equilibria rather than one. In fact, this new functional response seems to be quite unique. We used analytical and numerical methods to show that the resulting system shows a much richer dynamical behavior than the Beddington-DeAngelis response, or other typically used functional responses. For example, cyclic-fold, saddle-fold, homoclinic saddle connection, and multiple crossing bifurcations can all occur. We then use a smooth approximation to the Holling type I functional response with predator mutual interference to show that these dynamical properties do not result from the lack of smoothness, but rather from subtle differences in the functional responses. ?? 2011 Springer Science+Business Media, LLC.

  5. Almost periodic solution of non-autonomous Lotka-Volterra predator-prey dispersal system with delays.

    PubMed

    Meng, Xinzhu; Chen, Lansun

    2006-12-21

    This paper studies a non-autonomous Lotka-Volterra almost periodic predator-prey dispersal system with discrete and continuous time delays which consists of n-patches, the prey species can disperse among n-patches, but the predator species is confined to one patch and cannot disperse. By using comparison theorem and delay differential equation basic theory, we prove the system is uniformly persistent under some appropriate conditions. Further, by constructing suitable Lyapunov functional, we show that the system is globally asymptotically stable under some appropriate conditions. By using almost periodic functional hull theory, we show that the almost periodic system has a unique globally asymptotical stable strictly positive almost periodic solution. The conditions for the permanence, global stability of system and the existence, uniqueness of positive almost periodic solution depend on delays, so, time delays are "profitless". Finally, conclusions and two particular cases are given. These results are basically an extension of the known results for non-autonomous Lotka-Volterra systems.

  6. Theoretical study and control optimization of an integrated pest management predator-prey model with power growth rate.

    PubMed

    Sun, Kaibiao; Zhang, Tonghua; Tian, Yuan

    2016-09-01

    This work presents a pest control predator-prey model, where rate of change in prey density follows a scaling law with exponent less than one and the control is by an integrated management strategy. The aim is to investigate the change in system dynamics and determine a pest control level with minimum control price. First, the dynamics of the proposed model without control is investigated by taking the exponent as an index parameter. And then, to determine the frequency of spraying chemical pesticide and yield releases of the predator, the existence of the order-1 periodic orbit of the control system is discussed in cases. Furthermore, to ensure a certain robustness of the adopted control, i.e., for an inaccurately detected species density or a deviation, the control system could be stabilized at the order-1 periodic orbit, the stability of the order-1 periodic orbit is verified by an stability criterion for a general semi-continuous dynamical system. In addition, to minimize the total cost input in pest control, an optimization problem is formulated and the optimum pest control level is obtained. At last, the numerical simulations with a specific model are carried out to complement the theoretical results.

  7. Self-organizing patterns maintained by competing associations in a six-species predator-prey model

    NASA Astrophysics Data System (ADS)

    Szabó, György; Szolnoki, Attila; Borsos, István

    2008-04-01

    Formation and competition of associations are studied in a six-species ecological model where each species has two predators and two prey. Each site of a square lattice is occupied by an individual belonging to one of the six species. The evolution of the spatial distribution of species is governed by iterated invasions between the neighboring predator-prey pairs with species specific rates and by site exchange between the neutral pairs with a probability X . This dynamical rule yields the formation of five associations composed of two or three species with proper spatiotemporal patterns. For large X a cyclic dominance can occur between the three two-species associations whereas one of the two three-species associations prevails in the whole system for low values of X in the final state. Within an intermediate range of X all the five associations coexist due to the fact that cyclic invasions between the two-species associations reduce their resistance temporarily against the invasion of three-species associations.

  8. Food-web structure in relation to environmental gradients and predator-prey ratios in tank-bromeliad ecosystems.

    PubMed

    Dézerald, Olivier; Leroy, Céline; Corbara, Bruno; Carrias, Jean-François; Pélozuelo, Laurent; Dejean, Alain; Céréghino, Régis

    2013-01-01

    Little is known of how linkage patterns between species change along environmental gradients. The small, spatially discrete food webs inhabiting tank-bromeliads provide an excellent opportunity to analyse patterns of community diversity and food-web topology (connectance, linkage density, nestedness) in relation to key environmental variables (habitat size, detrital resource, incident radiation) and predators:prey ratios. We sampled 365 bromeliads in a wide range of understorey environments in French Guiana and used gut contents of invertebrates to draw the corresponding 365 connectance webs. At the bromeliad scale, habitat size (water volume) determined the number of species that constitute food-web nodes, the proportion of predators, and food-web topology. The number of species as well as the proportion of predators within bromeliads declined from open to forested habitats, where the volume of water collected by bromeliads was generally lower because of rainfall interception by the canopy. A core group of microorganisms and generalist detritivores remained relatively constant across environments. This suggests that (i) a highly-connected core ensures food-web stability and key ecosystem functions across environments, and (ii) larger deviations in food-web structures can be expected following disturbance if detritivores share traits that determine responses to environmental changes. While linkage density and nestedness were lower in bromeliads in the forest than in open areas, experiments are needed to confirm a trend for lower food-web stability in the understorey of primary forests. PMID:23977128

  9. From cues to signals: evolution of interspecific communication via aposematism and mimicry in a predator-prey system.

    PubMed

    Lehmann, Kenna D S; Goldman, Brian W; Dworkin, Ian; Bryson, David M; Wagner, Aaron P

    2014-01-01

    Current theory suggests that many signaling systems evolved from preexisting cues. In aposematic systems, prey warning signals benefit both predator and prey. When the signal is highly beneficial, a third species often evolves to mimic the toxic species, exploiting the signaling system for its own protection. We investigated the evolutionary dynamics of predator cue utilization and prey signaling in a digital predator-prey system in which prey could evolve to alter their appearance to mimic poison-free or poisonous prey. In predators, we observed rapid evolution of cue recognition (i.e. active behavioral responses) when presented with sufficiently poisonous prey. In addition, active signaling (i.e. mimicry) evolved in prey under all conditions that led to cue utilization. Thus we show that despite imperfect and dishonest signaling, given a high cost of consuming poisonous prey, complex systems of interspecific communication can evolve via predator cue recognition and prey signal manipulation. This provides evidence supporting hypotheses that cues may serve as stepping-stones in the evolution of more advanced communication and signaling systems that incorporate information about the environment.

  10. Bifurcation of Codimension 3 in a Predator-Prey System of Leslie Type with Simplified Holling Type IV Functional Response

    NASA Astrophysics Data System (ADS)

    Huang, Jicai; Xia, Xiaojing; Zhang, Xinan; Ruan, Shigui

    It was shown in [Li & Xiao, 2007] that in a predator-prey model of Leslie type with simplified Holling type IV functional response some complex bifurcations can occur simultaneously for some values of parameters, such as codimension 1 subcritical Hopf bifurcation and codimension 2 Bogdanov-Takens bifurcation. In this paper, we show that for the same model there exists a unique degenerate positive equilibrium which is a degenerate Bogdanov-Takens singularity (focus case) of codimension 3 for other values of parameters. We prove that the model exhibits degenerate focus type Bogdanov-Takens bifurcation of codimension 3 around the unique degenerate positive equilibrium. Numerical simulations, including the coexistence of three hyperbolic positive equilibria, two limit cycles, bistability states (one stable equilibrium and one stable limit cycle, or two stable equilibria), tristability states (two stable equilibria and one stable limit cycle), a stable limit cycle enclosing a homoclinic loop, a homoclinic loop enclosing an unstable limit cycle, or a stable limit cycle enclosing three unstable hyperbolic positive equilibria for various parameter values, confirm the theoretical results.

  11. Theoretical study and control optimization of an integrated pest management predator-prey model with power growth rate.

    PubMed

    Sun, Kaibiao; Zhang, Tonghua; Tian, Yuan

    2016-09-01

    This work presents a pest control predator-prey model, where rate of change in prey density follows a scaling law with exponent less than one and the control is by an integrated management strategy. The aim is to investigate the change in system dynamics and determine a pest control level with minimum control price. First, the dynamics of the proposed model without control is investigated by taking the exponent as an index parameter. And then, to determine the frequency of spraying chemical pesticide and yield releases of the predator, the existence of the order-1 periodic orbit of the control system is discussed in cases. Furthermore, to ensure a certain robustness of the adopted control, i.e., for an inaccurately detected species density or a deviation, the control system could be stabilized at the order-1 periodic orbit, the stability of the order-1 periodic orbit is verified by an stability criterion for a general semi-continuous dynamical system. In addition, to minimize the total cost input in pest control, an optimization problem is formulated and the optimum pest control level is obtained. At last, the numerical simulations with a specific model are carried out to complement the theoretical results. PMID:27378223

  12. Impairment of O-antigen production confers resistance to grazing in a model amoeba-cyanobacterium predator-prey system.

    PubMed

    Simkovsky, Ryan; Daniels, Emy F; Tang, Karen; Huynh, Stacey C; Golden, Susan S; Brahamsha, Bianca

    2012-10-01

    The grazing activity of predators on photosynthetic organisms is a major mechanism of mortality and population restructuring in natural environments. Grazing is also one of the primary difficulties in growing cyanobacteria and other microalgae in large, open ponds for the production of biofuels, as contaminants destroy valuable biomass and prevent stable, continuous production of biofuel crops. To address this problem, we have isolated a heterolobosean amoeba, HGG1, that grazes upon unicellular and filamentous freshwater cyanobacterial species. We have established a model predator-prey system using this amoeba and Synechococcus elongatus PCC 7942. Application of amoebae to a library of mutants of S. elongatus led to the identification of a grazer-resistant knockout mutant of the wzm ABC O-antigen transporter gene, SynPCC7942_1126. Mutations in three other genes involved in O-antigen synthesis and transport also prevented the expression of O-antigen and conferred resistance to HGG1. Complementation of these rough mutants returned O-antigen expression and susceptibility to amoebae. Rough mutants are easily identifiable by appearance, are capable of autoflocculation, and do not display growth defects under standard laboratory growth conditions, all of which are desired traits for a biofuel production strain. Thus, preventing the production of O-antigen is a pathway for producing resistance to grazing by certain amoebae. PMID:23012457

  13. From Cues to Signals: Evolution of Interspecific Communication via Aposematism and Mimicry in a Predator-Prey System

    PubMed Central

    Lehmann, Kenna D. S.; Goldman, Brian W.; Dworkin, Ian; Bryson, David M.; Wagner, Aaron P.

    2014-01-01

    Current theory suggests that many signaling systems evolved from preexisting cues. In aposematic systems, prey warning signals benefit both predator and prey. When the signal is highly beneficial, a third species often evolves to mimic the toxic species, exploiting the signaling system for its own protection. We investigated the evolutionary dynamics of predator cue utilization and prey signaling in a digital predator-prey system in which prey could evolve to alter their appearance to mimic poison-free or poisonous prey. In predators, we observed rapid evolution of cue recognition (i.e. active behavioral responses) when presented with sufficiently poisonous prey. In addition, active signaling (i.e. mimicry) evolved in prey under all conditions that led to cue utilization. Thus we show that despite imperfect and dishonest signaling, given a high cost of consuming poisonous prey, complex systems of interspecific communication can evolve via predator cue recognition and prey signal manipulation. This provides evidence supporting hypotheses that cues may serve as stepping-stones in the evolution of more advanced communication and signaling systems that incorporate information about the environment. PMID:24614755

  14. Consequences of a Refuge for the Predator-Prey Dynamics of a Wolf-Elk System in Banff National Park, Alberta, Canada

    PubMed Central

    Goldberg, Joshua F.; Hebblewhite, Mark; Bardsley, John

    2014-01-01

    Refugia can affect predator-prey dynamics via movements between refuge and non-refuge areas. We examine the influence of a refuge on population dynamics in a large mammal predator-prey system. Wolves (Canis lupus) have recolonized much of their former range in North America, and as a result, ungulate prey have exploited refugia to reduce predation risk with unknown impacts on wolf-prey dynamics. We examined the influence of a refuge on elk (Cervus elaphus) and wolf population dynamics in Banff National Park. Elk occupy the Banff townsite with little predation, whereas elk in the adjoining Bow Valley experience higher wolf predation. The Banff refuge may influence Bow Valley predator-prey dynamics through source-sink movements. To test this hypothesis, we used 26 years of wolf and elk population counts and the Delayed Rejection Adaptive Metropolis Markov chain Monte Carlo method to fit five predator-prey models: 1) with no source-sink movements, 2) with elk density-dependent dispersal from the refuge to the non-refuge, 3) with elk predation risk avoidance movements from the non-refuge to the refuge, 4) with differential movement rates between refuge and non-refuge, and 5) with short-term, source-sink wolf movements. Model 1 provided the best fit of the data, as measured by Akaike Information Criterion (AIC). In the top model, Banff and Bow Valley elk had median growth rates of 0.08 and 0.03 (95% credibility intervals [CIs]: 0.027–0.186 and 0.001–0.143), respectively, Banff had a median carrying capacity of 630 elk (95% CI: 471.9–2676.9), Bow Valley elk had a median wolf encounter rate of 0.02 (95% CI: 0.013–0.030), and wolves had a median death rate of 0.23 (95% CI: 0.146–0.335) and a median conversion efficiency of 0.07 (95% CI: 0.031–0.124). We found little evidence for potential source-sink movements influencing the predator-prey dynamics of this system. This result suggests that the refuge was isolated from the non-refuge. PMID:24670632

  15. Consequences of a refuge for the predator-prey dynamics of a wolf-elk system in Banff National Park, Alberta, Canada.

    PubMed

    Goldberg, Joshua F; Hebblewhite, Mark; Bardsley, John

    2014-01-01

    Refugia can affect predator-prey dynamics via movements between refuge and non-refuge areas. We examine the influence of a refuge on population dynamics in a large mammal predator-prey system. Wolves (Canis lupus) have recolonized much of their former range in North America, and as a result, ungulate prey have exploited refugia to reduce predation risk with unknown impacts on wolf-prey dynamics. We examined the influence of a refuge on elk (Cervus elaphus) and wolf population dynamics in Banff National Park. Elk occupy the Banff townsite with little predation, whereas elk in the adjoining Bow Valley experience higher wolf predation. The Banff refuge may influence Bow Valley predator-prey dynamics through source-sink movements. To test this hypothesis, we used 26 years of wolf and elk population counts and the Delayed Rejection Adaptive Metropolis Markov chain Monte Carlo method to fit five predator-prey models: 1) with no source-sink movements, 2) with elk density-dependent dispersal from the refuge to the non-refuge, 3) with elk predation risk avoidance movements from the non-refuge to the refuge, 4) with differential movement rates between refuge and non-refuge, and 5) with short-term, source-sink wolf movements. Model 1 provided the best fit of the data, as measured by Akaike Information Criterion (AIC). In the top model, Banff and Bow Valley elk had median growth rates of 0.08 and 0.03 (95% credibility intervals [CIs]: 0.027-0.186 and 0.001-0.143), respectively, Banff had a median carrying capacity of 630 elk (95% CI: 471.9-2676.9), Bow Valley elk had a median wolf encounter rate of 0.02 (95% CI: 0.013-0.030), and wolves had a median death rate of 0.23 (95% CI: 0.146-0.335) and a median conversion efficiency of 0.07 (95% CI: 0.031-0.124). We found little evidence for potential source-sink movements influencing the predator-prey dynamics of this system. This result suggests that the refuge was isolated from the non-refuge. PMID:24670632

  16. Consequences of a refuge for the predator-prey dynamics of a wolf-elk system in Banff National Park, Alberta, Canada.

    PubMed

    Goldberg, Joshua F; Hebblewhite, Mark; Bardsley, John

    2014-01-01

    Refugia can affect predator-prey dynamics via movements between refuge and non-refuge areas. We examine the influence of a refuge on population dynamics in a large mammal predator-prey system. Wolves (Canis lupus) have recolonized much of their former range in North America, and as a result, ungulate prey have exploited refugia to reduce predation risk with unknown impacts on wolf-prey dynamics. We examined the influence of a refuge on elk (Cervus elaphus) and wolf population dynamics in Banff National Park. Elk occupy the Banff townsite with little predation, whereas elk in the adjoining Bow Valley experience higher wolf predation. The Banff refuge may influence Bow Valley predator-prey dynamics through source-sink movements. To test this hypothesis, we used 26 years of wolf and elk population counts and the Delayed Rejection Adaptive Metropolis Markov chain Monte Carlo method to fit five predator-prey models: 1) with no source-sink movements, 2) with elk density-dependent dispersal from the refuge to the non-refuge, 3) with elk predation risk avoidance movements from the non-refuge to the refuge, 4) with differential movement rates between refuge and non-refuge, and 5) with short-term, source-sink wolf movements. Model 1 provided the best fit of the data, as measured by Akaike Information Criterion (AIC). In the top model, Banff and Bow Valley elk had median growth rates of 0.08 and 0.03 (95% credibility intervals [CIs]: 0.027-0.186 and 0.001-0.143), respectively, Banff had a median carrying capacity of 630 elk (95% CI: 471.9-2676.9), Bow Valley elk had a median wolf encounter rate of 0.02 (95% CI: 0.013-0.030), and wolves had a median death rate of 0.23 (95% CI: 0.146-0.335) and a median conversion efficiency of 0.07 (95% CI: 0.031-0.124). We found little evidence for potential source-sink movements influencing the predator-prey dynamics of this system. This result suggests that the refuge was isolated from the non-refuge.

  17. Man-Computer Symbiosis Through Interactive Graphics: A Survey and Identification of Critical Research Areas.

    ERIC Educational Resources Information Center

    Knoop, Patricia A.

    The purpose of this report was to determine the research areas that appear most critical to achieving man-computer symbiosis. An operational definition of man-computer symbiosis was developed by: (1) reviewing and summarizing what others have said about it, and (2) attempting to distinguish it from other types of man-computer relationships. From…

  18. Relative importance of evolutionary dynamics depends on the composition of microbial predator-prey community.

    PubMed

    Friman, Ville-Petri; Dupont, Alessandra; Bass, David; Murrell, David J; Bell, Thomas

    2016-06-01

    Community dynamics are often studied in subsets of pairwise interactions. Scaling pairwise interactions back to the community level is, however, problematic because one given interaction might not reflect ecological and evolutionary outcomes of other functionally similar species interactions or capture the emergent eco-evolutionary dynamics arising only in more complex communities. Here we studied this experimentally by exposing Pseudomonas fluorescens SBW25 prey bacterium to four different protist predators (Tetrahymena pyriformis, Tetrahymena vorax, Chilomonas paramecium and Acanthamoeba polyphaga) in all possible single-predator, two-predator and four-predator communities for hundreds of prey generations covering both ecological and evolutionary timescales. We found that only T. pyriformis selected for prey defence in single-predator communities. Although T. pyriformis selection was constrained in the presence of the intraguild predator, T. vorax, T. pyriformis selection led to evolution of specialised prey defence strategies in the presence of C. paramecium or A. polyphaga. At the ecological level, adapted prey populations were phenotypically more diverse, less stable and less productive compared with non-adapted prey populations. These results suggest that predator community composition affects the relative importance of ecological and evolutionary processes and can crucially determine when rapid evolution has the potential to change ecological properties of microbial communities. PMID:26684728

  19. Relative importance of evolutionary dynamics depends on the composition of microbial predator-prey community.

    PubMed

    Friman, Ville-Petri; Dupont, Alessandra; Bass, David; Murrell, David J; Bell, Thomas

    2016-06-01

    Community dynamics are often studied in subsets of pairwise interactions. Scaling pairwise interactions back to the community level is, however, problematic because one given interaction might not reflect ecological and evolutionary outcomes of other functionally similar species interactions or capture the emergent eco-evolutionary dynamics arising only in more complex communities. Here we studied this experimentally by exposing Pseudomonas fluorescens SBW25 prey bacterium to four different protist predators (Tetrahymena pyriformis, Tetrahymena vorax, Chilomonas paramecium and Acanthamoeba polyphaga) in all possible single-predator, two-predator and four-predator communities for hundreds of prey generations covering both ecological and evolutionary timescales. We found that only T. pyriformis selected for prey defence in single-predator communities. Although T. pyriformis selection was constrained in the presence of the intraguild predator, T. vorax, T. pyriformis selection led to evolution of specialised prey defence strategies in the presence of C. paramecium or A. polyphaga. At the ecological level, adapted prey populations were phenotypically more diverse, less stable and less productive compared with non-adapted prey populations. These results suggest that predator community composition affects the relative importance of ecological and evolutionary processes and can crucially determine when rapid evolution has the potential to change ecological properties of microbial communities.

  20. The role of zonal flows and predator-prey oscillations in triggering the formation of edge and core transport barriers

    NASA Astrophysics Data System (ADS)

    Schmitz, L.; Zeng, L.; Rhodes, T. L.; Hillesheim, J. C.; Peebles, W. A.; Groebner, R. J.; Burrell, K. H.; McKee, G. R.; Yan, Z.; Tynan, G. R.; Diamond, P. H.; Boedo, J. A.; Doyle, E. J.; Grierson, B. A.; Chrystal, C.; Austin, M. E.; Solomon, W. M.; Wang, G.

    2014-07-01

    We present direct evidence of low frequency, radially sheared, turbulence-driven flows (zonal flows (ZFs)) triggering edge transport barrier formation preceding the L- to H-mode transition via periodic turbulence suppression in limit-cycle oscillations (LCOs), consistent with predator-prey dynamics. The final transition to edge-localized mode-free H-mode occurs after the equilibrium E × B flow shear increases due to ion pressure profile evolution. ZFs are also observed to initiate formation of an electron internal transport barrier (ITB) at the q = 2 rational surface via local suppression of electron-scale turbulence. Multi-channel Doppler backscattering (DBS) has revealed the radial structure of the ZF-induced shear layer and the E × B shearing rate, ωE×B, in both barrier types. During edge barrier formation, the shearing rate lags the turbulence envelope during the LCO by 90°, transitioning to anti-correlation (180°) when the equilibrium shear dominates the turbulence-driven flow shear due to the increasing edge pressure gradient. The time-dependent flow shear and the turbulence envelope are anti-correlated (180° out of phase) in the electron ITB. LCOs with time-reversed evolution dynamics (transitioning from an equilibrium-flow dominated to a ZF-dominated state) have also been observed during the H-L back-transition and are potentially of interest for controlled ramp-down of the plasma stored energy and pressure (normalized to the poloidal magnetic field) \\beta_{\\theta} =2\\mu_{0} n{( {T_{e} +T_{i}})}/{B_{\\theta}^{2}} in ITER.

  1. Bifurcation analysis of a discrete-time ratio-dependent predator-prey model with Allee Effect

    NASA Astrophysics Data System (ADS)

    Cheng, Lifang; Cao, Hongjun

    2016-09-01

    A discrete-time predator-prey model with Allee effect is investigated in this paper. We consider the strong and the weak Allee effect (the population growth rate is negative and positive at low population density, respectively). From the stability analysis and the bifurcation diagrams, we get that the model with Allee effect (strong or weak) growth function and the model with logistic growth function have somewhat similar bifurcation structures. If the predator growth rate is smaller than its death rate, two species cannot coexist due to having no interior fixed points. When the predator growth rate is greater than its death rate and other parameters are fixed, the model can have two interior fixed points. One is always unstable, and the stability of the other is determined by the integral step size, which decides the species coexistence or not in some extent. If we increase the value of the integral step size, then the bifurcated period doubled orbits or invariant circle orbits may arise. So the numbers of the prey and the predator deviate from one stable state and then circulate along the period orbits or quasi-period orbits. When the integral step size is increased to a critical value, chaotic orbits may appear with many uncertain period-windows, which means that the numbers of prey and predator will be chaotic. In terms of bifurcation diagrams and phase portraits, we know that the complexity degree of the model with strong Allee effect decreases, which is related to the fact that the persistence of species can be determined by the initial species densities.

  2. Instability of defensive alliances in the predator-prey model on complex networks

    NASA Astrophysics Data System (ADS)

    Kim, Beom Jun; Liu, Jianbin; Um, Jaegon; Lee, Sung-Ik

    2005-10-01

    A model of six-species food web is studied in the viewpoint of spatial interaction structures. Each species has two predators and two preys, and it was previously known that the defensive alliances of three cyclically predating species self-organize in two dimensions. The alliance-breaking transition occurs as either the mutation rate is increased or interaction topology is randomized in the scheme of the Watts-Strogatz model. In the former case of temporal disorder, via the finite-size scaling analysis, the transition is clearly shown to belong to the two-dimensional Ising universality class. In contrast, the geometric or spatial randomness for the latter case yields a discontinuous phase transition. The mean-field limit of the model is analytically solved and then compared with numerical results. The dynamic universality and the temporally periodic behaviors are also discussed.

  3. Environmental fluctuations restrict eco-evolutionary dynamics in predator-prey system.

    PubMed

    Hiltunen, Teppo; Ayan, Gökçe B; Becks, Lutz

    2015-06-01

    Environmental fluctuations, species interactions and rapid evolution are all predicted to affect community structure and their temporal dynamics. Although the effects of the abiotic environment and prey evolution on ecological community dynamics have been studied separately, these factors can also have interactive effects. Here we used bacteria-ciliate microcosm experiments to test for eco-evolutionary dynamics in fluctuating environments. Specifically, we followed population dynamics and a prey defence trait over time when populations were exposed to regular changes of bottom-up or top-down stressors, or combinations of these. We found that the rate of evolution of a defence trait was significantly lower in fluctuating compared with stable environments, and that the defence trait evolved to lower levels when two environmental stressors changed recurrently. The latter suggests that top-down and bottom-up changes can have additive effects constraining evolutionary response within populations. The differences in evolutionary trajectories are explained by fluctuations in population sizes of the prey and the predator, which continuously alter the supply of mutations in the prey and strength of selection through predation. Thus, it may be necessary to adopt an eco-evolutionary perspective on studies concerning the evolution of traits mediating species interactions.

  4. Collective behavior and predation success in a predator-prey model inspired by hunting bats.

    PubMed

    Lin, Yuan; Abaid, Nicole

    2013-12-01

    We establish an agent-based model to study the impact of prey behavior on the hunting success of predators. The predators and prey are modeled as self-propelled particles moving in a three-dimensional domain and subject to specific sensing abilities and behavioral rules inspired by bat hunting. The predators randomly search for prey. The prey either align velocity directions with peers, defined as "interacting" prey, or swarm "independently" of peer presence; both types of prey are subject to additive noise. In a simulation study, we find that interacting prey using low noise have the maximum predation avoidance because they form localized large groups, while they suffer high predation as noise increases due to the formation of broadly dispersed small groups. Independent prey, which are likely to be uniformly distributed in the domain, have higher predation risk under a low noise regime as they traverse larger spatial extents. These effects are enhanced in large prey populations, which exhibit more ordered collective behavior or more uniform spatial distribution as they are interacting or independent, respectively.

  5. Collective behavior and predation success in a predator-prey model inspired by hunting bats

    NASA Astrophysics Data System (ADS)

    Lin, Yuan; Abaid, Nicole

    2013-12-01

    We establish an agent-based model to study the impact of prey behavior on the hunting success of predators. The predators and prey are modeled as self-propelled particles moving in a three-dimensional domain and subject to specific sensing abilities and behavioral rules inspired by bat hunting. The predators randomly search for prey. The prey either align velocity directions with peers, defined as "interacting" prey, or swarm "independently" of peer presence; both types of prey are subject to additive noise. In a simulation study, we find that interacting prey using low noise have the maximum predation avoidance because they form localized large groups, while they suffer high predation as noise increases due to the formation of broadly dispersed small groups. Independent prey, which are likely to be uniformly distributed in the domain, have higher predation risk under a low noise regime as they traverse larger spatial extents. These effects are enhanced in large prey populations, which exhibit more ordered collective behavior or more uniform spatial distribution as they are interacting or independent, respectively.

  6. Absorbing phase transition in a four-state predator-prey model in one dimension

    NASA Astrophysics Data System (ADS)

    Chatterjee, Rakesh; Mohanty, P. K.; Basu, Abhik

    2011-05-01

    The model of competition between densities of two different species, called predator and prey, is studied on a one-dimensional periodic lattice, where each site can be in one of the four states, say, empty, or occupied by a single predator, or occupied by a single prey, or by both. Along with the pairwise death of predators and growth of prey, we introduce an interaction where the predators can eat one of the neighboring prey and reproduce a new predator there instantly. The model shows a non-equilibrium phase transition into an unusual absorbing state where predators are absent and the lattice is fully occupied by prey. The critical exponents of the system are found to be different from those of the directed percolation universality class and they are robust against addition of explicit diffusion.

  7. The limits of adaptation: humans and the predator-prey arms race.

    PubMed

    Vermeij, Geerat J

    2012-07-01

    In the history of life, species have adapted to their consumers by evolving a wide variety of defenses. By contrast, animal species harvested in the wild by humans have not adapted structurally. Nonhuman predators have high failure rates at one or more stages of an attack, indicating that victim species have spatial refuges or phenotypic defenses that permit further functional improvement. A new compilation confirms that species in the wild cannot achieve immunity from human predation with structural defenses. The only remaining options are to become undesirable or to live in or escape to places where harvesting by people is curtailed. Escalation between prey defenses and predators' weapons may be restricted under human dominance to interactions involving those low-level predators that have benefited from human overexploitation of top consumers.

  8. Unraveling the predator-prey relationship of Cupriavidus necator and Bacillus subtilis.

    PubMed

    Seccareccia, Ivana; Kovács, Ákos T; Gallegos-Monterrosa, Ramses; Nett, Markus

    2016-11-01

    Cupriavidus necator is a non-obligate bacterial predator of Gram-negative and Gram-positive bacteria. In this study, we set out to determine the conditions, which are necessary to observe predatory behavior of C. necator. Using Bacillus subtilis as a prey organism, we confirmed that the predatory performance of C. necator is correlated with the available copper level, and that the killing is mediated, at least in part, by secreted extracellular factors. The predatory activity depends on the nutrition status of C. necator, but does not require a quorum of predator cells. This suggests that C. necator is no group predator. Further analyses revealed that sporulation enables B. subtilis to avoid predation by C. necator. In contrast to the interaction with predatory myxobacteria, however, an intact spore coat is not required for resistance. Instead resistance is possibly mediated by quiescence.

  9. Unraveling the predator-prey relationship of Cupriavidus necator and Bacillus subtilis.

    PubMed

    Seccareccia, Ivana; Kovács, Ákos T; Gallegos-Monterrosa, Ramses; Nett, Markus

    2016-11-01

    Cupriavidus necator is a non-obligate bacterial predator of Gram-negative and Gram-positive bacteria. In this study, we set out to determine the conditions, which are necessary to observe predatory behavior of C. necator. Using Bacillus subtilis as a prey organism, we confirmed that the predatory performance of C. necator is correlated with the available copper level, and that the killing is mediated, at least in part, by secreted extracellular factors. The predatory activity depends on the nutrition status of C. necator, but does not require a quorum of predator cells. This suggests that C. necator is no group predator. Further analyses revealed that sporulation enables B. subtilis to avoid predation by C. necator. In contrast to the interaction with predatory myxobacteria, however, an intact spore coat is not required for resistance. Instead resistance is possibly mediated by quiescence. PMID:27664741

  10. Turing patterns and apparent competition in predator-prey food webs on networks.

    PubMed

    Fernandes, L D; de Aguiar, M A M

    2012-11-01

    Reaction-diffusion systems may lead to the formation of steady-state heterogeneous spatial patterns, known as Turing patterns. Their mathematical formulation is important for the study of pattern formation in general and plays central roles in many fields of biology, such as ecology and morphogenesis. Here we show that Turing patterns may have a decisive role in shaping the abundance distribution of predators and prey living in patchy landscapes. We extend the original model proposed by Nakao and Mikhailov [Nat. Phys. 6, 544 (2010)] by considering food chains with several interacting pairs of prey and predators distributed on a scale-free network of patches. We identify patterns of species distribution displaying high degrees of apparent competition driven by Turing instabilities. Our results provide further indication that differences in abundance distribution among patches can be generated dynamically by self organized Turing patterns and not only by intrinsic environmental heterogeneity. PMID:23214853

  11. Turing patterns and apparent competition in predator-prey food webs on networks

    NASA Astrophysics Data System (ADS)

    Fernandes, L. D.; de Aguiar, M. A. M.

    2012-11-01

    Reaction-diffusion systems may lead to the formation of steady-state heterogeneous spatial patterns, known as Turing patterns. Their mathematical formulation is important for the study of pattern formation in general and plays central roles in many fields of biology, such as ecology and morphogenesis. Here we show that Turing patterns may have a decisive role in shaping the abundance distribution of predators and prey living in patchy landscapes. We extend the original model proposed by Nakao and Mikhailov [Nat. Phys.1745-247310.1038/nphys1651 6, 544 (2010)] by considering food chains with several interacting pairs of prey and predators distributed on a scale-free network of patches. We identify patterns of species distribution displaying high degrees of apparent competition driven by Turing instabilities. Our results provide further indication that differences in abundance distribution among patches can be generated dynamically by self organized Turing patterns and not only by intrinsic environmental heterogeneity.

  12. Temperature-altered predator-prey dynamics in freshwater ponds in Arctic Greenland

    NASA Astrophysics Data System (ADS)

    Culler, L. E.; Ayres, M.

    2011-12-01

    Temperature sets the pace of many biological processes including species interactions. Describing the response of terrestrial and aquatic habitats to climate warming therefore requires studies of cross-trophic level dynamics. I use freshwater pond ecosystems in Arctic Greenland to study how the thermal environment shapes interactions between predators and their prey. This system is of interest because warming trends are notable, freshwaters are responding rapidly and dynamically to changes in temperature, and the biology of freshwaters is intimately linked to the terrestrial environment. My focal species are the Arctic mosquito (Diptera: Culicidae, Aedes nigripes) and its invertebrate predator, a predaceous diving beetle (Coleoptera: Dytiscidae, Colymbetes dolabratus). Both species develop as larvae in snow-melt ponds in May and June. I used experimental and observational studies to test effects of temperature on larval mosquito growth rates and predation rates by C. dolabratus. Results indicate strong effects of temperature on growth rate and development time but weak effects of temperature on consumption of mosquitoes by their predators. Incorporation of measured temperature response functions into a mosquito demographic model will elucidate how mosquito population dynamics in Arctic Greenland may change with temperature. For example, warming increases growth rate and decreases development time of mosquito larvae, which shortens the time larvae are exposed to predation. Additionally, decreased development time leads to an earlier mosquito emergence, with potential consequences for the health of wildlife. Evaluation of this model will reveal the importance of considering cross-trophic level dynamics when predicting mosquito population response to warming. Future studies will address interesting properties emerging from modeling, such as how shorter development time affects adult size and fitness, and connecting results to terrestrial systems in Arctic Greenland.

  13. Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis.

    PubMed

    Zhou, Fangyuan; Lou, Qiaozhe; Wang, Bo; Xu, Letian; Cheng, Chihang; Lu, Min; Sun, Jianghua

    2016-01-01

    Insect-microbe interaction is a key area of research in multiplayer symbiosis, yet little is known about the role of microbe-microbe interactions in insect-microbe symbioses. The red turpentine beetle (RTB) has destroyed millions of healthy pines in China and forms context-dependent relationships with associated fungi. The adult-associated fungus Leptographium procerum have played key roles in RTB colonization. However, common fungal associates (L. procerum and Ophiostoma minus) with RTB larvae compete for carbohydrates. Here, we report that dominant bacteria associated with RTB larvae buffer the competition by inhibiting the growth and D-glucose consumption of O. minus. However, they didn't inhibit the growth of L. procerum and forced this fungus to consume D-pinitol before consuming D-glucose, even though D-glucose was available and a better carbon source not only for L. procerum but also for RTB larvae and associated bacteria. This suggests the most frequently isolated bacteria associated with RTB larvae could affect fungal growth and the sequence of carbohydrate consumption. Thus, this regulates carbohydrate allocation in the RTB larva-microbe community, which may in turn benefit RTB larvae development. We also discuss the mechanism of carbohydrate allocation in the RTB larva-microbe community, and its potential contribution to the maintenance of a symbiotic community.

  14. Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis

    PubMed Central

    Zhou, Fangyuan; Lou, Qiaozhe; Wang, Bo; Xu, Letian; Cheng, Chihang; Lu, Min; Sun, Jianghua

    2016-01-01

    Insect-microbe interaction is a key area of research in multiplayer symbiosis, yet little is known about the role of microbe-microbe interactions in insect-microbe symbioses. The red turpentine beetle (RTB) has destroyed millions of healthy pines in China and forms context-dependent relationships with associated fungi. The adult-associated fungus Leptographium procerum have played key roles in RTB colonization. However, common fungal associates (L. procerum and Ophiostoma minus) with RTB larvae compete for carbohydrates. Here, we report that dominant bacteria associated with RTB larvae buffer the competition by inhibiting the growth and D-glucose consumption of O. minus. However, they didn’t inhibit the growth of L. procerum and forced this fungus to consume D-pinitol before consuming D-glucose, even though D-glucose was available and a better carbon source not only for L. procerum but also for RTB larvae and associated bacteria. This suggests the most frequently isolated bacteria associated with RTB larvae could affect fungal growth and the sequence of carbohydrate consumption. Thus, this regulates carbohydrate allocation in the RTB larva-microbe community, which may in turn benefit RTB larvae development. We also discuss the mechanism of carbohydrate allocation in the RTB larva-microbe community, and its potential contribution to the maintenance of a symbiotic community. PMID:26839264

  15. Altered Carbohydrates Allocation by Associated Bacteria-fungi Interactions in a Bark Beetle-microbe Symbiosis.

    PubMed

    Zhou, Fangyuan; Lou, Qiaozhe; Wang, Bo; Xu, Letian; Cheng, Chihang; Lu, Min; Sun, Jianghua

    2016-01-01

    Insect-microbe interaction is a key area of research in multiplayer symbiosis, yet little is known about the role of microbe-microbe interactions in insect-microbe symbioses. The red turpentine beetle (RTB) has destroyed millions of healthy pines in China and forms context-dependent relationships with associated fungi. The adult-associated fungus Leptographium procerum have played key roles in RTB colonization. However, common fungal associates (L. procerum and Ophiostoma minus) with RTB larvae compete for carbohydrates. Here, we report that dominant bacteria associated with RTB larvae buffer the competition by inhibiting the growth and D-glucose consumption of O. minus. However, they didn't inhibit the growth of L. procerum and forced this fungus to consume D-pinitol before consuming D-glucose, even though D-glucose was available and a better carbon source not only for L. procerum but also for RTB larvae and associated bacteria. This suggests the most frequently isolated bacteria associated with RTB larvae could affect fungal growth and the sequence of carbohydrate consumption. Thus, this regulates carbohydrate allocation in the RTB larva-microbe community, which may in turn benefit RTB larvae development. We also discuss the mechanism of carbohydrate allocation in the RTB larva-microbe community, and its potential contribution to the maintenance of a symbiotic community. PMID:26839264

  16. Arsenic rich Himalayan hot spring metagenomics reveal genetically novel predator-prey genotypes.

    PubMed

    Sangwan, Naseer; Lambert, Carey; Sharma, Anukriti; Gupta, Vipin; Khurana, Paramjit; Khurana, Jitendra P; Sockett, R Elizabeth; Gilbert, Jack A; Lal, Rup

    2015-12-01

    Bdellovibrio bacteriovorus are small Deltaproteobacteria that invade, kill and assimilate their prey. Metagenomic assembly analysis of the microbial mats of an arsenic rich, hot spring was performed to describe the genotypes of the predator Bdellovibrio and the ecogenetically adapted taxa Enterobacter. The microbial mats were enriched with Bdellovibrio (1.3%) and several Gram-negative bacteria including Bordetella (16%), Enterobacter (6.8%), Burkholderia (4.8%), Acinetobacter (2.3%) and Yersinia (1%). A high-quality (47 contigs, 25X coverage; 3.5 Mbp) draft genome of Bdellovibrio (strain ArHS; Arsenic Hot Spring) was reassembled, which lacked the marker gene Bd0108 associated with the usual method of prey interaction and invasion for this genus, while maintaining genes coding for the hydrolytic enzymes necessary for prey assimilation. By filtering microbial mat samples (< 0.45 μm) to enrich for small predatory cell sizes, we observed Bdellovibrio-like cells attached side-on to E. coli through electron microscopy. Furthermore, a draft pan-genome of the dominant potential host taxon, Enterobacter cloacae ArHS (4.8 Mb), along with three of its viral genotypes (n = 3; 42 kb, 49 kb and 50 kb), was assembled. These data were further used to analyse the population level evolutionary dynamics (taxonomical and functional) of reconstructed genotypes.

  17. Delay-Induced Triple-Zero Bifurcation in a Delayed Leslie-Type Predator-Prey Model with Additive Allee Effect

    NASA Astrophysics Data System (ADS)

    Jiang, Jiao; Song, Yongli; Yu, Pei

    2016-06-01

    In this paper, a Leslie-type predator-prey model with ratio-dependent functional response and Allee effect on prey is considered. We first study the existence of the multiple positive equilibria and their stability. Then we investigate the effect of delay on the distribution of the roots of characteristic equation and obtain the conditions for the occurrence of simple-zero, double-zero and triple-zero singularities. The formulations for calculating the normal form of the triple-zero bifurcation of the delay differential equations are derived. We show that, under certain conditions on the parameters, the system exhibits homoclinic orbit, heteroclinic orbit and periodic orbit.

  18. Neo-Symbiosis: The Next Stage in the Evolution of Human Information Interaction.

    SciTech Connect

    Griffith, Douglas; Greitzer, Frank L.

    2008-12-01

    In his 1960 paper Man-Machine Symbiosis, Licklider predicted that human brains and computing machines will be coupled in a tight partnership that will think as no human brain has ever thought and process data in a way not approached by the information-handling machines we know today. Today we are on the threshold of resurrecting the vision of symbiosis. While Licklider’s original vision suggested a co-equal relationship, here we discuss an updated vision, neo-symbiosis, in which the human holds a superordinate position in an intelligent human-computer collaborative environment. This paper was originally published as a journal article and is being published as a chapter in an upcoming book series, Advances in Novel Approaches in Cognitive Informatics and Natural Intelligence.

  19. Stability and Hopf Bifurcation of a Delayed Density-Dependent Predator-Prey System with Beddington-DeAngelis Functional Response

    NASA Astrophysics Data System (ADS)

    Li, Haiyin; Meng, Gang; She, Zhikun

    In this paper, we investigate the stability and Hopf bifurcation of a delayed density-dependent predator-prey system with Beddington-DeAngelis functional response, where not only the prey density dependence but also the predator density dependence are considered such that the studied predator-prey system conforms to the realistically biological environment. We start with the geometric criterion introduced by Beretta and Kuang [2002] and then investigate the stability of the positive equilibrium and the stability switches of the system with respect to the delay parameter τ. Especially, we generalize the geometric criterion in [Beretta & Kuang, 2002] by introducing the condition (i‧) which can be assured by the condition (H2‧), and adopting the technique of lifting to define the function S˜n(τ) for alternatively determining stability switches at the zeroes of S˜n(τ)s. Afterwards, by the Poincaré normal form for Hopf bifurcation in [Kuznetsov, 1998] and the bifurcation formulae in [Hassard et al., 1981], we qualitatively analyze the properties for the occurring Hopf bifurcations of the system (3). Finally, an example with numerical simulations is given to illustrate the obtained results.

  20. Reconsidering the importance of the past in predator-prey models: both numerical and functional responses depend on delayed prey densities.

    PubMed

    Li, Jiqiu; Fenton, Andy; Kettley, Lee; Roberts, Phillip; Montagnes, David J S

    2013-10-01

    We propose that delayed predator-prey models may provide superficially acceptable predictions for spurious reasons. Through experimentation and modelling, we offer a new approach: using a model experimental predator-prey system (the ciliates Didinium and Paramecium), we determine the influence of past-prey abundance at a fixed delay (approx. one generation) on both functional and numerical responses (i.e. the influence of present : past-prey abundance on ingestion and growth, respectively). We reveal a nonlinear influence of past-prey abundance on both responses, with the two responding differently. Including these responses in a model indicated that delay in the numerical response drives population oscillations, supporting the accepted (but untested) notion that reproduction, not feeding, is highly dependent on the past. We next indicate how delays impact short- and long-term population dynamics. Critically, we show that although superficially the standard (parsimonious) approach to modelling can reasonably fit independently obtained time-series data, it does so by relying on biologically unrealistic parameter values. By contrast, including our fully parametrized delayed density dependence provides a better fit, offering insights into underlying mechanisms. We therefore present a new approach to explore time-series data and a revised framework for further theoretical studies. PMID:23926152

  1. Schoolyard Symbiosis.

    ERIC Educational Resources Information Center

    Allard, David W.

    1996-01-01

    Discusses different types of symbiosis--mutualism, commensalism, and parasitism--and examples of each type including lichens, legumes, mistletoe, and epiphytes. Describes how teachers can use these examples in the study of symbiosis which allows teachers to focus on many basic concepts in evolution, cell biology, ecology, and other fields of…

  2. Spatial distribution of predator/prey interactions in the Scotia Sea: implications for measuring predator/fisheries overlap

    NASA Astrophysics Data System (ADS)

    Reid, Keith; Sims, Michelle; White, Richard W.; Gillon, Keith W.

    2004-06-01

    The measurement of spatial overlap between predators and fisheries exploiting a common prey source is dependent upon the measurement scale used; inappropriate scales may produce misleading results. Previous assessments of the level of overlap between predators and fisheries for Antarctic krill ( Euphausia superba) in the region of the South Shetland Islands used different measurement scales and arrived at contradictory conclusions. At-sea data from observations of krill predators during the CCAMLR 2000 Survey were used to identify the areas of potential overlap with fisheries in the Scotia Sea and to determine the scale at which such overlap should be measured. The relationship between autocorrelation and sampling distance was used to identify the characteristic scales of the distribution of predators, krill and krill fisheries, and an effort-corrected index of relative abundance as a function of distance from land was used to identify the characteristics of areas of high potential for overlap. Despite distinct differences in foraging ecology, a group of krill-dependent species including chinstrap penguin ( Pygoscelis antarctica), (Antarctic) fur seal ( Arctocephalus sp. ( gazella)) and white-chinned petrel ( Procellaria aequinoctialis) showed similar patterns of distribution; the relative abundances were highest at 60-120 km from land and decreased sharply at distances greater than 150 km from land. There were more inter-specific differences in the characteristic scales, which were of the order of 50-100 km. Antarctic krill had a characteristic scale of approximately 200 km and the relationship with distance from land showed a log-linear decline. Krill fisheries operate at a scale of 150 km and occur almost entirely within 100 km of land. The requirement of land for breeding and the biological and oceanographic conditions that produce the high concentrations of krill associated with those land areas produce a system in which the demand for Antarctic krill from fisheries and predators is essentially co-extensive. The areas of greatest potential overlap are within 150-200 km of land and to accommodate the scales of operation of the processes involved the extent of such overlap in these areas should be assessed at scales of 70-100 km.

  3. Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts

    PubMed Central

    Lambert, Carey; Lerner, Thomas R.; Bui, Nhat Khai; Somers, Hannah; Aizawa, Shin-Ichi; Liddell, Susan; Clark, Ana; Vollmer, Waldemar; Lovering, Andrew L.; Sockett, R. Elizabeth

    2016-01-01

    The peptidoglycan wall, located in the periplasm between the inner and outer membranes of the cell envelope in Gram-negative bacteria, maintains cell shape and endows osmotic robustness. Predatory Bdellovibrio bacteria invade the periplasm of other bacterial prey cells, usually crossing the peptidoglycan layer, forming transient structures called bdelloplasts within which the predators replicate. Prey peptidoglycan remains intact for several hours, but is modified and then degraded by escaping predators. Here we show predation is altered by deleting two Bdellovibrio N-acetylglucosamine (GlcNAc) deacetylases, one of which we show to have a unique two domain structure with a novel regulatory”plug”. Deleting the deacetylases limits peptidoglycan degradation and rounded prey cell “ghosts” persist after mutant-predator exit. Mutant predators can replicate unusually in the periplasmic region between the peptidoglycan wall and the outer membrane rather than between wall and inner-membrane, yet still obtain nutrients from the prey cytoplasm. Deleting two further genes encoding DacB/PBP4 family proteins, known to decrosslink and round prey peptidoglycan, results in a quadruple mutant Bdellovibrio which leaves prey-shaped ghosts upon predation. The resultant bacterial ghosts contain cytoplasmic membrane within bacteria-shaped peptidoglycan surrounded by outer membrane material which could have promise as “bacterial skeletons” for housing artificial chromosomes. PMID:27211869

  4. Linking predator-prey interactions with exposure to a trophically transmitted parasite using PCR-based analyses.

    PubMed

    Luong, Lien T; Chapman, Eric G; Harwood, James D; Hudson, Peter J

    2013-01-01

    Parasite transmission is determined by the rate of contact between a susceptible host and an infective stage and susceptibility to infection given an exposure event. Attempts to measure levels of variation in exposure in natural populations can be especially challenging. The level of exposure to a major class of parasites, trophically transmitted parasites, can be estimated by investigating the host's feeding behaviour. Since the parasites rely on the ingestion of infective intermediate hosts for transmission, the potential for exposure to infection is inherently linked to the definitive host's feeding ecology. Here, we combined epidemiological data and molecular analyses (polymerase chain reaction) of the diet of the definitive host, the white-footed mouse (Peromyscus leucopus), to investigate temporal and individual heterogeneities in exposure to infection. Our results show that the consumption of cricket intermediate hosts accounted for much of the variation in infection; mice that had consumed crickets were four times more likely to become infected than animals that tested negative for cricket DNA. In particular, pregnant female hosts were three times more likely to consume crickets, which corresponded to a threefold increase in infection compared with nonpregnant females. Interestingly, males in breeding condition had a higher rate of infection even though breeding males were just as likely to test positive for cricket consumption as nonbreeding males. These results suggest that while heterogeneity in host diet served as a strong predictor of exposure risk, differential susceptibility to infection may also play a key role, particularly among male hosts. By combining PCR analyses with epidemiological data, we revealed temporal variation in exposure through prey consumption and identified potentially important individual heterogeneities in parasite transmission. PMID:23110593

  5. Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts.

    PubMed

    Lambert, Carey; Lerner, Thomas R; Bui, Nhat Khai; Somers, Hannah; Aizawa, Shin-Ichi; Liddell, Susan; Clark, Ana; Vollmer, Waldemar; Lovering, Andrew L; Sockett, R Elizabeth

    2016-01-01

    The peptidoglycan wall, located in the periplasm between the inner and outer membranes of the cell envelope in Gram-negative bacteria, maintains cell shape and endows osmotic robustness. Predatory Bdellovibrio bacteria invade the periplasm of other bacterial prey cells, usually crossing the peptidoglycan layer, forming transient structures called bdelloplasts within which the predators replicate. Prey peptidoglycan remains intact for several hours, but is modified and then degraded by escaping predators. Here we show predation is altered by deleting two Bdellovibrio N-acetylglucosamine (GlcNAc) deacetylases, one of which we show to have a unique two domain structure with a novel regulatory"plug". Deleting the deacetylases limits peptidoglycan degradation and rounded prey cell "ghosts" persist after mutant-predator exit. Mutant predators can replicate unusually in the periplasmic region between the peptidoglycan wall and the outer membrane rather than between wall and inner-membrane, yet still obtain nutrients from the prey cytoplasm. Deleting two further genes encoding DacB/PBP4 family proteins, known to decrosslink and round prey peptidoglycan, results in a quadruple mutant Bdellovibrio which leaves prey-shaped ghosts upon predation. The resultant bacterial ghosts contain cytoplasmic membrane within bacteria-shaped peptidoglycan surrounded by outer membrane material which could have promise as "bacterial skeletons" for housing artificial chromosomes.

  6. Differential sensitivity of Dugesia dorotocephala and Cheumatopsyche pettiti to water acidification: ecological implication for predator-prey interactions.

    PubMed

    Camargo, J A; Ward, J V

    1992-07-01

    The initial hypothesis that predation pressure should decrease with decreasing pH in aquatic macrobenthic communities if predatory invertebrates are more sensitive to water acidification than prey invertebrates is tested. Short-term toxicity bioassays were conducted in soft water (average value of total hardness 38.0 mg CaCO3/L) to determine the differential sensitivity of the predator, Dugesia dorotocephala (Turbellaria, Tricladida), and the prey, larvae of Cheumatopsyche pettiti (Insecta, Trichoptera), to low pH. Test pH solutions were prepared with sulfuric acid (H2SO4). Test species were also exposed to high concentrations of sulfate ion (95 mg SO4 =/L for D. dorotocephala and 340 mg SO4 =/L for C. pettiti) as sulfate toxicity controls, using potassium sulfate (K2SO4). No mortality was observed during these toxicity controls, indicating that toxic effects generated by low pH were fundamentally due to H+ ions. The 72 and 96-h LC50s (as pH values) and their 95% confidence limits were 4.88 (4.72-5.05) and 5.04 (4.89-5.21) for D. dorotocephala, and 3.25 (3.00-3.51) and 3.48 (3.24-3.73) for C. pettiti. Net-spinning caddis-fly larvae migrated from their retreat nets and protruded their anal papillae before dying. After short-term bioassays, predation-pressure laboratory experiments were performed for 6 days. The cumulative mortality of C. pettiti by predation of D. dorotocephala decreased with decreasing sublethal pH values. The average predation rates at mean pH values of 7.7, 7.7, 6.6, 6.5, 6.2 and 6.0 were 2.5, 2.0, 1.33, 1.17, 0.67 and 0.33 larvae/day, respectively. The major biotic factor affecting predation pressure appears to be the reduction in the physiological activity of triclads at low pH.(ABSTRACT TRUNCATED AT 250 WORDS)

  7. Understanding the importance of episodic acidification on fish predator-prey interactions: does weak acidification impair predator recognition?

    PubMed

    Brown, Grant E; Elvidge, Chris K; Ferrari, Maud C O; Chivers, Douglas P

    2012-11-15

    The ability of prey to recognize predators is a fundamental prerequisite to avoid being eaten. Indeed, many prey animals learn to distinguish species that pose a threat from those that do not. Once the prey has learned the identity of one predator, it may generalize this recognition to similar predators with which the prey has no experience. The ability to generalize reduces the costs associated with learning and further enhances the ability of the prey to avoid relevant threats. For many aquatic organisms, recognition of predators is based on odor signatures, consequently any anthropogenic alteration in water chemistry has the potential to impair recognition and learning of predators. Here we explored whether episodic acidification could influence the ability of juvenile rainbow trout to learn to recognize an unknown predator and then generalize this recognition to a closely related predator. Trout were conditioned to recognize the odor of pumpkinseed sunfish under circumneutral (~pH 7) conditions, and then tested for recognition of pumpkinseed or longear sunfish under both neutral or weakly acidic (~pH 6) conditions. When tested for a response to pumpkinseed odor, we found no significant effect of predator odor pH: trout responded similarly regardless of pH. Moreover, under neutral conditions, trout were able to generalize their recognition to the odor of longear sunfish. However, the trout could not generalize their recognition of the longear sunfish under acidic conditions. Given the widespread occurrence of anthropogenic acidification, acid-mediated impairment of predator recognition and generalization may be a pervasive problem for freshwater salmonid populations and other aquatic organisms.

  8. Neo-Symbiosis: The Next Stage in the Evolution of Human Information Interaction

    SciTech Connect

    Griffith, Douglas; Greitzer, Frank L.

    2007-01-01

    Abstract--The purpose of this paper is to re-address the vision of human-computer symbiosis as originally expressed by J.C.R. Licklider nearly a half-century ago. We describe this vision, place it in some historical context relating to the evolution of human factors research, and we observe that the field is now in the process of re-invigorating Licklider’s vision. We briefly assess the state of the technology within the context of contemporary theory and practice, and we describe what we regard as this emerging field of neo-symbiosis. We offer some initial thoughts on requirements to define functionality of neo-symbiotic systems and discuss research challenges associated with their development and evaluation.

  9. Effect of delay in a Lotka-Volterra type predator-prey model with a transmissible disease in the predator species.

    PubMed

    Haque, Mainul; Sarwardi, Sahabuddin; Preston, Simon; Venturino, Ezio

    2011-11-01

    We consider a system of delay differential equations modeling the predator-prey ecoepidemic dynamics with a transmissible disease in the predator population. The time lag in the delay terms represents the predator gestation period. We analyze essential mathematical features of the proposed model such as local and global stability and in addition study the bifurcations arising in some selected situations. Threshold values for a few parameters determining the feasibility and stability conditions of some equilibria are discovered and similarly a threshold is identified for the disease to die out. The parameter thresholds under which the system admits a Hopf bifurcation are investigated both in the presence of zero and non-zero time lag. Numerical simulations support our theoretical analysis.

  10. Effect of delay in a Lotka-Volterra type predator-prey model with a transmissible disease in the predator species.

    PubMed

    Haque, Mainul; Sarwardi, Sahabuddin; Preston, Simon; Venturino, Ezio

    2011-11-01

    We consider a system of delay differential equations modeling the predator-prey ecoepidemic dynamics with a transmissible disease in the predator population. The time lag in the delay terms represents the predator gestation period. We analyze essential mathematical features of the proposed model such as local and global stability and in addition study the bifurcations arising in some selected situations. Threshold values for a few parameters determining the feasibility and stability conditions of some equilibria are discovered and similarly a threshold is identified for the disease to die out. The parameter thresholds under which the system admits a Hopf bifurcation are investigated both in the presence of zero and non-zero time lag. Numerical simulations support our theoretical analysis. PMID:21784082

  11. Predator-prey relations between age-1+ summer flounder (Paralichthys dentatus, Linnaeus) and age-0 winter flounder (Pseudopleuronectes americanus, Walbaum): predator diets, prey selection, and effects of sediments and macrophytes.

    PubMed

    Manderson; Phelan; Stoner; Hilbert

    2000-08-23

    Laboratory experiments and weekly trammel net surveys in the Navesink River, New Jersey (USA) were used to examine the predator-prey interaction between age-1+ summer flounder (Paralichthys dentatus) and age-0 winter flounder (Pseudopleuronectes americanus). Winter flounder (24-67 mm TL) were the dominant piscine prey of summer flounder (n=95, 252-648 mm TL) collected in trammel nets. We observed a temporal shift in summer flounder diets from sand shrimp (Crangon septemspinosa) and winter flounder, dominant during June and early July, to blue crabs (Callinectes sapidus) and other fishes (primarily Atlantic silversides, Menidia menidia and Atlantic menhaden, Brevortia tyrannus) later in the summer. Variations in prey selection appeared to be related to changes in the spatial distribution of predators and spatio-temporal variation in prey availability. In laboratory experiments, summer flounder (271-345 mm total length, TL) preferred demersal winter flounder to a pelagic fish (Atlantic silversides) and a benthic invertebrate (sand shrimp) prey, and the vulnerability of winter flounder increased with increasing prey body size from 20 to 90 mm TL. Experiments testing habitat effects showed that mortality of winter flounder in three different size classes (20-29, 40-49, 60-69 mm TL) was not influenced by sediment grain sizes permitting differential burial of the prey. However, vegetation enhanced survival, with fish suffering lower mortality in eelgrass (Zostera marina, 15+/-0.04%) than in sea lettuce (Ulva lactuca, 38+/-0.04%) or bare sand (70+/-0.07%) when the macrophytes were planted to produce similar leaf surface areas (5000 cm(2) m(-2)). Prey vulnerability appeared to be related to the role of vision in the predator's attack strategy and prey activity levels. PMID:10958899

  12. Teaching Symbiosis.

    ERIC Educational Resources Information Center

    Harper, G. H.

    1985-01-01

    Argues that the meaning of the word "symbiosis" be standardized and that it should be used in a broad sense. Also criticizes the orthodox teaching of general principles in this subject and recommends that priority be given to continuity, intimacy, and associated adaptations, rather than to the harm/benefit relationship. (Author/JN)

  13. Pattern formation, long-term transients, and the Turing-Hopf bifurcation in a space- and time-discrete predator-prey system.

    PubMed

    Rodrigues, Luiz Alberto Díaz; Mistro, Diomar Cristina; Petrovskii, Sergei

    2011-08-01

    Understanding of population dynamics in a fragmented habitat is an issue of considerable importance. A natural modelling framework for these systems is spatially discrete. In this paper, we consider a predator-prey system that is discrete both in space and time, and is described by a Coupled Map Lattice (CML). The prey growth is assumed to be affected by a weak Allee effect and the predator dynamics includes intra-specific competition. We first reveal the bifurcation structure of the corresponding non-spatial system. We then obtain the conditions of diffusive instability on the lattice. In order to reveal the properties of the emerging patterns, we perform extensive numerical simulations. We pay a special attention to the system properties in a vicinity of the Turing-Hopf bifurcation, which is widely regarded as a mechanism of pattern formation and spatiotemporal chaos in space-continuous systems. Counter-intuitively, we obtain that the spatial patterns arising in the CML are more typically stationary, even when the local dynamics is oscillatory. We also obtain that, for some parameter values, the system's dynamics is dominated by long-term transients, so that the asymptotical stationary pattern arises as a sudden transition between two different patterns. Finally, we argue that our findings may have important ecological implications.

  14. The Role of Zonal Flows and Predator-Prey Oscillations in Triggering the L-H Transition and in Internal Transport Barriers

    NASA Astrophysics Data System (ADS)

    Schmitz, L.; Zeng, L.; Rhodes, T. L.; Hillesheim, J. C.; Peebles, W. A.; McKee, G. R.; Yan, Z.; Groebner, R. J.; Burrell, K. H.; Tynan, G. R.; Boedo, J. A.; Solomon, W. M.

    2012-10-01

    Low frequency Zonal Flows (ZFs) have been observed to trigger the L-H transition near the power threshold, by either an extended predator-prey limit cycle oscillation (LCO [1]) or a short (˜0.5-1.5 ms) ZF burst executing only part of one limit cycle. Localized turbulence suppression (kθρs˜0.5) is initiated as the ZF shearing rate approaches the turbulence decorrelation rate. Turbulence-flow correlations (via Doppler Backscattering) show that the ZF amplitude and shear initially lag the rms fluctuation level by 90^o during LCO, transitioning to 180^o as the increasing ion pressure gradient and resulting equilibrium ExB shear secure the final transition to ELM-free H-mode. In a separate experiment, localized suppression of electron-scale fluctuations (kθρs˜3) by ZF shear is also observed in an internal thermal electron transport barrier. However, in contrast to the L-H transition, here the density fluctuation level is always anti-correlated (180^o out of phase) with the ZF shearing rate. 4pt[1] L. Schmitz et al., Phys. Rev. Lett. 108, 155002 (2012).

  15. Neo-Symbiosis: The Next Stage in the Evolution of Human Information Interaction

    SciTech Connect

    Griffith, Douglas; Greitzer, Frank L.

    2008-03-01

    We re-address the vision of human-computer symbiosis expressed by J. C. R. Licklider nearly a half-century ago, when he wrote: “The hope is that in not too many years, human brains and computing machines will be coupled together very tightly, and that the resulting partnership will think as no human brain has ever thought and process data in a way not approached by the information-handling machines we know today.” (Licklider, 1960). Unfortunately, little progress was made toward this vision over four decades following Licklider’s challenge, despite significant advancements in the fields of human factors and computer science. Licklider’s vision was largely forgotten. However, recent advances in information science and technology, psychology, and neuroscience have rekindled the potential of making the Licklider’s vision a reality. This paper provides a historical context for and updates the vision, and it argues that such a vision is needed as a unifying framework for advancing IS&T.

  16. The detectability half-life in arthropod predator-prey research: what it is, why we need it, how to measure it, and how to use it.

    PubMed

    Greenstone, Matthew H; Payton, Mark E; Weber, Donald C; Simmons, Alvin M

    2014-08-01

    Molecular gut-content analysis enables detection of arthropod predation with minimal disruption of ecosystem processes. Most assays produce only qualitative results, with each predator testing either positive or negative for target prey remains. Nevertheless, they have yielded important insights into community processes. For example, they have confirmed the long-hypothesized role of generalist predators in retarding early-season build-up of pest populations prior to the arrival of more specialized predators and parasitoids and documented the ubiquity of secondary and intraguild predation. However, raw qualitative gut-content data cannot be used to assess the relative impact of different predator taxa on prey population dynamics: they must first be weighted by the relative detectability periods for molecular prey remains for each predator-prey combination. If this is not carried out, interpretations of predator impact will be biased towards those with the longest detectabilities. We review the challenges in determining detectability half-lives, including unstated assumptions that have often been ignored in the performance of feeding trials. We also show how detectability half-lives can be used to properly weight assay data to rank predators by their importance in prey population suppression, and how sets of half-lives can be used to test hypotheses concerning predator ecology and physiology. We use data from 32 publications, comprising 97 half-lives, to generate and test hypotheses on taxonomic differences in detectability half-lives and discuss the possible role of the detectability half-life in interpreting qPCR and next-generation sequencing data.

  17. Mandible-Powered Escape Jumps in Trap-Jaw Ants Increase Survival Rates during Predator-Prey Encounters

    PubMed Central

    Larabee, Fredrick J.; Suarez, Andrew V.

    2015-01-01

    Animals use a variety of escape mechanisms to increase the probability of surviving predatory attacks. Antipredator defenses can be elaborate, making their evolutionary origin unclear. Trap-jaw ants are known for their rapid and powerful predatory mandible strikes, and some species have been observed to direct those strikes at the substrate, thereby launching themselves into the air away from a potential threat. This potential escape mechanism has never been examined in a natural context. We studied the use of mandible-powered jumping in Odontomachus brunneus during their interactions with a common ant predator: pit-building antlions. We observed that while trap-jaw ant workers escaped from antlion pits by running in about half of interactions, in 15% of interactions they escaped by mandible-powered jumping. To test whether escape jumps improved individual survival, we experimentally prevented workers from jumping and measured their escape rate. Workers with unrestrained mandibles escaped from antlion pits significantly more frequently than workers with restrained mandibles. Our results indicate that some trap-jaw ant species can use mandible-powered jumps to escape from common predators. These results also provide a charismatic example of evolutionary co-option, where a trait that evolved for one function (predation) has been co-opted for another (defense). PMID:25970637

  18. The role of mycorrhizal symbiosis in aluminum and phosphorus interactions in relation to aluminum tolerance in soybean.

    PubMed

    Zhang, Shuang; Zhou, Jia; Wang, Guihua; Wang, Xiurong; Liao, Hong

    2015-12-01

    Arbuscular mycorrhizal (AM) fungi protect plants against aluminum (Al) toxicity, but the mechanisms of Al and phosphorus (P) interactions in relation to Al tolerance in mycorrhizal plants are only poorly understood. In this study, varying Al and P treatments were applied to soybean plants cultivated in the presence or absence of three different AM fungi. The results showed that plants in symbiotic association with Gigaspora margarita displayed higher Al tolerance than Rhizophagus irregularis or Glomus claroideum. The effectiveness of G. margarita appeared to be associated with more abundant arbuscules and less affected intraradical hyphae compared to no Al controls. The highest levels of Al toxicity mitigation were observed with the combination of high P availability and AM fungal inoculation, which was associated with a concomitant increase in the expression of the AM-inducible phosphate (Pi) transporter gene GmPT9 in soybean. Taken together, these results suggest that AM symbiosis can alleviate Al toxicity in soybean through enhanced P nutrition, as well as, the alteration of the abundance of mycorrhizal infection structures. These findings highlight the importance of P nutrition status in ameliorating Al toxicity in mycorrhizal plants. PMID:26278539

  19. The role of mycorrhizal symbiosis in aluminum and phosphorus interactions in relation to aluminum tolerance in soybean.

    PubMed

    Zhang, Shuang; Zhou, Jia; Wang, Guihua; Wang, Xiurong; Liao, Hong

    2015-12-01

    Arbuscular mycorrhizal (AM) fungi protect plants against aluminum (Al) toxicity, but the mechanisms of Al and phosphorus (P) interactions in relation to Al tolerance in mycorrhizal plants are only poorly understood. In this study, varying Al and P treatments were applied to soybean plants cultivated in the presence or absence of three different AM fungi. The results showed that plants in symbiotic association with Gigaspora margarita displayed higher Al tolerance than Rhizophagus irregularis or Glomus claroideum. The effectiveness of G. margarita appeared to be associated with more abundant arbuscules and less affected intraradical hyphae compared to no Al controls. The highest levels of Al toxicity mitigation were observed with the combination of high P availability and AM fungal inoculation, which was associated with a concomitant increase in the expression of the AM-inducible phosphate (Pi) transporter gene GmPT9 in soybean. Taken together, these results suggest that AM symbiosis can alleviate Al toxicity in soybean through enhanced P nutrition, as well as, the alteration of the abundance of mycorrhizal infection structures. These findings highlight the importance of P nutrition status in ameliorating Al toxicity in mycorrhizal plants.

  20. Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The roots of plants interact with soil mycorrhizal fungi to facilitate soil nutrient acquisition by the plant and carbon transfer to the fungus. Here we use tomato fruit ripening mutations to demonstrate that this root interaction communicates with and supports genetic mechanisms associated with th...

  1. A single predator charging a herd of prey: effects of self volume and predator-prey decision-making

    NASA Astrophysics Data System (ADS)

    Schwarzl, Maria; Godec, Aljaz; Oshanin, Gleb; Metzler, Ralf

    2016-06-01

    We study the degree of success of a single predator hunting a herd of prey on a two-dimensional square lattice landscape. We explicitly consider the self volume of the prey restraining their dynamics on the lattice. The movement of both predator and prey is chosen to include an intelligent, decision making step based on their respective sighting ranges, the radius in which they can detect the other species (prey cannot recognise each other besides the self volume interaction): after spotting each other the motion of prey and predator turns from a nearest neighbour random walk into directed escape or chase, respectively. We consider a large range of prey densities and sighting ranges and compute the mean first passage time for a predator to catch a prey as well as characterise the effective dynamics of the hunted prey. We find that the prey's sighting range dominates their life expectancy and the predator profits more from a bad eyesight of the prey than from his own good eye sight. We characterise the dynamics in terms of the mean distance between the predator and the nearest prey. It turns out that effectively the dynamics of this distance coordinate can be captured in terms of a simple Ornstein-Uhlenbeck picture. Reducing the many-body problem to a simple two-body problem by imagining predator and nearest prey to be connected by an effective Hookean bond, all features of the model such as prey density and sighting ranges merge into the effective binding constant.

  2. Integrating models to investigate critical phenological overlaps in complex ecological interactions: the mountain pine beetle-fungus symbiosis.

    PubMed

    Addison, Audrey; Powell, James A; Bentz, Barbara J; Six, Diana L

    2015-03-01

    The fates of individual species are often tied to synchronization of phenology, however, few methods have been developed for integrating phenological models involving linked species. In this paper, we focus on mountain pine beetle (MPB, Dendroctonus ponderosae) and its two obligate mutualistic fungi, Grosmannia clavigera and Ophiostoma montium. Growth rates of all three partners are driven by temperature, and their idiosyncratic responses affect interactions at important life stage junctures. One critical phase for MPB-fungus symbiosis occurs just before dispersal of teneral (new) adult beetles, when fungi are acquired and transported in specialized structures (mycangia). Before dispersal, fungi must capture sufficient spatial resources within the tree to ensure contact with teneral adults and get packed into mycangia. Mycangial packing occurs at an unknown time during teneral feeding. We adapt thermal models predicting fungal growth and beetle development to predict overlap between the competing fungi and MPB teneral adult feeding windows and emergence. We consider a spectrum of mycangial packing strategies and describe them in terms of explicit functions with unknown parameters. Rates of growth are fixed by laboratory data, the unknown parameters describing various packing strategies, as well as the degree to which mycangial growth is slowed in woody tissues as compared to agar, are determined by maximum likelihood and two years of field observations. At the field location used, the most likely fungus acquisition strategy for MPB was packing mycangia just prior to emergence. Estimated model parameters suggested large differences in the relative growth rates of the two fungi in trees at the study site, with the most likely model estimating that G. clavigera grew approximately twenty-five times faster than O. montium under the bark, which is completely unexpected in comparison with observed fungal growth on agar.

  3. Integrating models to investigate critical phenological overlaps in complex ecological interactions: the mountain pine beetle-fungus symbiosis.

    PubMed

    Addison, Audrey; Powell, James A; Bentz, Barbara J; Six, Diana L

    2015-03-01

    The fates of individual species are often tied to synchronization of phenology, however, few methods have been developed for integrating phenological models involving linked species. In this paper, we focus on mountain pine beetle (MPB, Dendroctonus ponderosae) and its two obligate mutualistic fungi, Grosmannia clavigera and Ophiostoma montium. Growth rates of all three partners are driven by temperature, and their idiosyncratic responses affect interactions at important life stage junctures. One critical phase for MPB-fungus symbiosis occurs just before dispersal of teneral (new) adult beetles, when fungi are acquired and transported in specialized structures (mycangia). Before dispersal, fungi must capture sufficient spatial resources within the tree to ensure contact with teneral adults and get packed into mycangia. Mycangial packing occurs at an unknown time during teneral feeding. We adapt thermal models predicting fungal growth and beetle development to predict overlap between the competing fungi and MPB teneral adult feeding windows and emergence. We consider a spectrum of mycangial packing strategies and describe them in terms of explicit functions with unknown parameters. Rates of growth are fixed by laboratory data, the unknown parameters describing various packing strategies, as well as the degree to which mycangial growth is slowed in woody tissues as compared to agar, are determined by maximum likelihood and two years of field observations. At the field location used, the most likely fungus acquisition strategy for MPB was packing mycangia just prior to emergence. Estimated model parameters suggested large differences in the relative growth rates of the two fungi in trees at the study site, with the most likely model estimating that G. clavigera grew approximately twenty-five times faster than O. montium under the bark, which is completely unexpected in comparison with observed fungal growth on agar. PMID:25556687

  4. "Prey Play": Learning about Predators and Prey through an Interactive, Role-Play Game

    ERIC Educational Resources Information Center

    Deaton, Cynthia C. M.; Dodd, Kristen; Drennon, Katherine; Nagle, Jack

    2012-01-01

    "Prey Play" is an interactive role-play activity that provides fifth-grade students with opportunities to examine predator-prey interactions. This four-part, role-play activity allows students to take on the role of a predator and prey as they reflect on the behaviors animals exhibit as they collect food and interact with one another, as well as…

  5. Nonconsumptive Predator-Prey Interactions: Sensitivity of the Detritivore Sinella curviseta (Collembola: Entomobryidae) to Cues of Predation Risk From the Spider Pardosa milvina (Araneae: Lycosidae).

    PubMed

    Sitvarin, Michael I; Romanchek, Christian; Rypstra, Ann L

    2015-04-01

    Predators can affect prey indirectly when prey respond to cues indicating a risk of predation by altering activity levels. Changes in prey behavior may cascade through the food web to influence ecosystem function. The response of the collembolan Sinella curviseta Brook (Collembola: Entomobryidae) to cues indicating predation risk (necromones and cues from the wolf spider Pardosa milvina (Hentz) (Araneae: Lycosidae)) was tested. Additionally, necromones and predator cues were paired in a conditioning experiment to determine whether the collembolan could form learned associations. Although collembolans did not alter activity levels in response to predator cues, numerous aspects of behavior differed in the presence of necromones. There was no detectable conditioned response to predator cues after pairing with necromones. These results provide insight into how collembolans perceive and respond to predation threats that vary in information content. Previously detected indirect impacts of predator cues on ecosystem function are likely due to changes in prey other than activity level. PMID:26313189

  6. Nonconsumptive Predator-Prey Interactions: Sensitivity of the Detritivore Sinella curviseta (Collembola: Entomobryidae) to Cues of Predation Risk From the Spider Pardosa milvina (Araneae: Lycosidae).

    PubMed

    Sitvarin, Michael I; Romanchek, Christian; Rypstra, Ann L

    2015-04-01

    Predators can affect prey indirectly when prey respond to cues indicating a risk of predation by altering activity levels. Changes in prey behavior may cascade through the food web to influence ecosystem function. The response of the collembolan Sinella curviseta Brook (Collembola: Entomobryidae) to cues indicating predation risk (necromones and cues from the wolf spider Pardosa milvina (Hentz) (Araneae: Lycosidae)) was tested. Additionally, necromones and predator cues were paired in a conditioning experiment to determine whether the collembolan could form learned associations. Although collembolans did not alter activity levels in response to predator cues, numerous aspects of behavior differed in the presence of necromones. There was no detectable conditioned response to predator cues after pairing with necromones. These results provide insight into how collembolans perceive and respond to predation threats that vary in information content. Previously detected indirect impacts of predator cues on ecosystem function are likely due to changes in prey other than activity level.

  7. Sensory ecology of predator-prey interactions: responses of the AN2 interneuron in the field cricket, Teleogryllus oceanicus to the echolocation calls of sympatric bats.

    PubMed

    Fullard, James H; Ratcliffe, John M; Guignion, Cassandra

    2005-07-01

    We observed the responses of the AN2 interneuron in the Pacific field cricket, Teleogryllus oceanicus, a cell implicated in eliciting avoidance flight away from bats, to acoustic stimuli representing the echolocation calls of bats as well as field recordings of search and gleaning attack calls of six species of insectivorous sympatric bats (West Australia, Australia: Tadarida australis, Chalinolobus goudii, Nyctophilus geoffroyi; Queensland, Australia: Vespadelus pumilus, Myotis adversus; Kaua'i, Hawai'i: Lasiurus cinereus). The broad frequency sensitivity of the AN2 cell indicates that T. oceanicus has evolved to detect a wide range of echolocation call frequencies. The reduced sensitivity of this cell at frequencies higher than 70 kHz suggests that some bats (e.g., the gleaning species, N. geoffroyi) may circumvent this insect's auditory defences by using frequency-mismatched (allotonic) calls. The calls of the freetail bat, T. australis evoked the strongest response in the AN2 cell but, ironically, this may allow this bat to prey upon T. oceanicus as previous studies report that under certain conditions, flying crickets exhibit ambiguous directional responses towards frequencies similar to those emitted by this bat. Short duration calls (1--2 ms) are sufficient to evoke AN2 responses with instantaneous spike periods capable of causing defensive flight behaviours; most bats tested emit calls of durations greater than this. The short calls of N. geoffroyi produced during gleaning attacks may reduce this species' acoustic conspicuousness to this cricket.

  8. How Symbiosis Creates Diversity

    ERIC Educational Resources Information Center

    Lord, Joshua

    2010-01-01

    Diversity in habitats on Earth is astounding--whether on land or in the sea--and this is in part due to symbiosis. The lesson described in this article helps students understand how symbiosis affects different organisms through a fun and engaging game where they match hosts and symbionts based on their respective needs. This 45-minute lesson is…

  9. Computer symbiosis: Emergence of symbiotic behavior through evolution

    SciTech Connect

    Ikegami, Takashi; Kaneko, Kunihiko

    1989-01-01

    Symbiosis is altruistic cooperation between distinct species. It is one of the most effective evolutionary processes, but its dynamics are not well understood as yet. A simple model of symbiosis is introduced, where we consider interactions between hosts and parasites and also mutations of hosts and parasites. It is found that a symbiotic state emerges for a suitable range of mutation rates. The symbiotic state is not static, but dynamically oscillates. Harmful parasites violating symbiosis appear periodically, but are rapidly extinguished by hosts and other parasites, and the symbiotic state is recovered. The emergence of ''Tit for Tat'' strategy to maintain symbiosis is discussed. 4 figs.

  10. Mutualistic and antagonistic trophic interactions in canola: the role of aphids in shaping pest and predator populations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aphids have important effects on the abundance and occurrence of tending ants, predators, and pests in agronomic systems, and DNA-based gut content analysis can aid in establishing predator-prey interactions. The purpose of this study was to determine how the presence of aphids, ants, and pest indiv...

  11. On Human Symbiosis and the Vicissitudes of Individuation. Infantile Psychosis, Volume 1.

    ERIC Educational Resources Information Center

    Mahler, Margaret S.

    The concepts of symbiosis and separation-individuation are explained, and the symbiosis theory of infantile psychosis is presented. Diagnostic considerations and clinical cases of child psychosis are reviewed; prototypes of mother-child interaction are described; and therapy is discussed. A summary of the symbiosis theory and a bibliography of…

  12. Assessment of agglomeration, co-sedimentation and trophic transfer of titanium dioxide nanoparticles in a laboratory-scale predator-prey model system.

    PubMed

    Gupta, Govind Sharan; Kumar, Ashutosh; Shanker, Rishi; Dhawan, Alok

    2016-01-01

    Nano titanium dioxide (nTiO2) is the most abundantly released engineered nanomaterial (ENM) in aquatic environments. Therefore, it is prudent to assess its fate and its effects on lower trophic-level organisms in the aquatic food chain. A predator-and-prey-based laboratory microcosm was established using Paramecium caudatum and Escherichia coli to evaluate the effects of nTiO2. The surface interaction of nTiO2 with E. coli significantly increased after the addition of Paramecium into the microcosm. This interaction favoured the hetero-agglomeration and co-sedimentation of nTiO2. The extent of nTiO2 agglomeration under experimental conditions was as follows: combined E. coli and Paramecium > Paramecium only > E. coli only > without E. coli or Paramecium. An increase in nTiO2 internalisation in Paramecium cells was also observed in the presence or absence of E. coli cells. These interactions and nTiO2 internalisation in Paramecium cells induced statistically significant (p < 0.05) effects on growth and the bacterial ingestion rate at 24 h. These findings provide new insights into the fate of nTiO2 in the presence of bacterial-ciliate interactions in the aquatic environment. PMID:27530102

  13. Assessment of agglomeration, co-sedimentation and trophic transfer of titanium dioxide nanoparticles in a laboratory-scale predator-prey model system

    PubMed Central

    Gupta, Govind Sharan; Kumar, Ashutosh; Shanker, Rishi; Dhawan, Alok

    2016-01-01

    Nano titanium dioxide (nTiO2) is the most abundantly released engineered nanomaterial (ENM) in aquatic environments. Therefore, it is prudent to assess its fate and its effects on lower trophic-level organisms in the aquatic food chain. A predator-and-prey-based laboratory microcosm was established using Paramecium caudatum and Escherichia coli to evaluate the effects of nTiO2. The surface interaction of nTiO2 with E. coli significantly increased after the addition of Paramecium into the microcosm. This interaction favoured the hetero-agglomeration and co-sedimentation of nTiO2. The extent of nTiO2 agglomeration under experimental conditions was as follows: combined E. coli and Paramecium > Paramecium only > E. coli only > without E. coli or Paramecium. An increase in nTiO2 internalisation in Paramecium cells was also observed in the presence or absence of E. coli cells. These interactions and nTiO2 internalisation in Paramecium cells induced statistically significant (p < 0.05) effects on growth and the bacterial ingestion rate at 24 h. These findings provide new insights into the fate of nTiO2 in the presence of bacterial-ciliate interactions in the aquatic environment. PMID:27530102

  14. Assessment of agglomeration, co-sedimentation and trophic transfer of titanium dioxide nanoparticles in a laboratory-scale predator-prey model system

    NASA Astrophysics Data System (ADS)

    Gupta, Govind Sharan; Kumar, Ashutosh; Shanker, Rishi; Dhawan, Alok

    2016-08-01

    Nano titanium dioxide (nTiO2) is the most abundantly released engineered nanomaterial (ENM) in aquatic environments. Therefore, it is prudent to assess its fate and its effects on lower trophic-level organisms in the aquatic food chain. A predator-and-prey-based laboratory microcosm was established using Paramecium caudatum and Escherichia coli to evaluate the effects of nTiO2. The surface interaction of nTiO2 with E. coli significantly increased after the addition of Paramecium into the microcosm. This interaction favoured the hetero-agglomeration and co-sedimentation of nTiO2. The extent of nTiO2 agglomeration under experimental conditions was as follows: combined E. coli and Paramecium > Paramecium only > E. coli only > without E. coli or Paramecium. An increase in nTiO2 internalisation in Paramecium cells was also observed in the presence or absence of E. coli cells. These interactions and nTiO2 internalisation in Paramecium cells induced statistically significant (p < 0.05) effects on growth and the bacterial ingestion rate at 24 h. These findings provide new insights into the fate of nTiO2 in the presence of bacterial-ciliate interactions in the aquatic environment.

  15. Symbiosis-mediated outbreaks

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Symbiosis simply means "living together" and in its narrowest form can mean two species deriving mutual benefit from the association. Recent studies have made evident that insect associations with microorganisms can range the gamut from casual associations to obligate or context-dependent mutualisms...

  16. Survival through Symbiosis.

    ERIC Educational Resources Information Center

    Abdi, S. Wali

    1992-01-01

    Describes symbiosis and its significance in the day-to-day lives of plants and animals. Gives specific examples of mutualism, commensalism, and parasitism in the relationships among fungus and plant roots, animals and bacteria, birds and animals, fish, and predator and prey. (MDH)

  17. Deadly competition and life-saving predation: the potential for alternative stable states in a stage-structured predator-prey system.

    PubMed

    Toscano, Benjamin J; Rombado, Bianca R; Rudolf, Volker H W

    2016-08-31

    Predators often undergo complete ontogenetic diet shifts, engaging in resource competition with species that become their prey during later developmental stages. Theory posits that this mix of stage-specific competition and predation, termed life-history intraguild predation (LHIGP), can lead to alternative stable states. In one state, prey exclude predators through competition (i.e. juvenile competitive bottleneck), while in the alternative, adult predators control prey density to limit competition and foster coexistence. Nevertheless, the interactions leading to these states have not been demonstrated in an empirical LHIGP system. To address this gap, we manipulated densities of cannibalistic adult cyclopoid copepods (Mesocyclops edax) and their cladoceran prey (Daphnia pulex) in a response-surface design and measured the maturation and survival of juvenile copepods (nauplii). We found that Daphnia reduced and even precluded both nauplii maturation and survival through depletion of a shared food resource. As predicted, adult copepods enhanced nauplii maturation and survival through Daphnia consumption, yet this positive effect was dependent on the relative abundance of Daphnia as well as the absolute density of adult copepods. Adult copepods reduced nauplii survival through cannibalism at low Daphnia densities and at the highest copepod density. This work demonstrates that predation can relax a strong juvenile competitive bottleneck in freshwater zooplankton, though cannibalism can reduce predator recruitment. Thus, our results highlight a key role for cannibalism in LHIGP dynamics and provide evidence for the interactions that drive alternative stable states in such systems. PMID:27581881

  18. Deadly competition and life-saving predation: the potential for alternative stable states in a stage-structured predator-prey system.

    PubMed

    Toscano, Benjamin J; Rombado, Bianca R; Rudolf, Volker H W

    2016-08-31

    Predators often undergo complete ontogenetic diet shifts, engaging in resource competition with species that become their prey during later developmental stages. Theory posits that this mix of stage-specific competition and predation, termed life-history intraguild predation (LHIGP), can lead to alternative stable states. In one state, prey exclude predators through competition (i.e. juvenile competitive bottleneck), while in the alternative, adult predators control prey density to limit competition and foster coexistence. Nevertheless, the interactions leading to these states have not been demonstrated in an empirical LHIGP system. To address this gap, we manipulated densities of cannibalistic adult cyclopoid copepods (Mesocyclops edax) and their cladoceran prey (Daphnia pulex) in a response-surface design and measured the maturation and survival of juvenile copepods (nauplii). We found that Daphnia reduced and even precluded both nauplii maturation and survival through depletion of a shared food resource. As predicted, adult copepods enhanced nauplii maturation and survival through Daphnia consumption, yet this positive effect was dependent on the relative abundance of Daphnia as well as the absolute density of adult copepods. Adult copepods reduced nauplii survival through cannibalism at low Daphnia densities and at the highest copepod density. This work demonstrates that predation can relax a strong juvenile competitive bottleneck in freshwater zooplankton, though cannibalism can reduce predator recruitment. Thus, our results highlight a key role for cannibalism in LHIGP dynamics and provide evidence for the interactions that drive alternative stable states in such systems.

  19. A multispecies statistical age-structured model to assess predator-prey balance: application to an intensively managed Lake Michigan pelagic fish community

    USGS Publications Warehouse

    Tsehaye, Iyob; Jones, Michael L.; Bence, James R.; Brenden, Travis O.; Madenjian, Charles P.; Warner, David M.

    2014-01-01

    Using a Bayesian model fitting approach, we developed a multispecies statistical catch-at-age model to assess trade-offs between predatory demands and prey productivities, focusing on the Lake Michigan pelagic fish community. We assessed these trade-offs in terms of predation mortalities and productivities of alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) and functional responses of salmonines. Our predation mortality estimates suggest that salmonine consumption has been a major driver of historical fluctuations in prey abundance, with sharp declines in alewife abundance in the 1980s and 2000s coinciding with estimated increases in predation mortalities. While Chinook salmon (Oncorhynchus tshawytscha) were food limited during periods of low alewife abundance, other salmonines appeared to maintain a (near) maximum per-predator consumption across all observed prey densities, suggesting that feedback mechanisms are unlikely to help maintain a balance between predator consumption and prey productivity in Lake Michigan. This study demonstrates that a multispecies modeling approach that combines stock assessment methods with explicit consideration of predator–prey interactions could provide the basis for tactical decision-making from a broader ecosystem perspective.

  20. Predator-prey relations and competition for food between age-0 lake trout and slimy sculpins in the Apostle Island region of Lake Superior

    USGS Publications Warehouse

    Hudson, Patrick L.; Savino, Jacqueline F.; Bronte, Charles R.

    1995-01-01

    Slimy sculpins (Cottus cognatus) are an important component of the fish community on reefs and adjacent nursery areas of the Great Lakes and overlap spatially with age-0 lake trout (Salvelinus namaycush). Important interactions between these fishes are possible during the lake trout's first year of life, which could include predation on each other's eggs and larvae, and competition for food resources. We investigated the diets of age-0 lake trout and slimy sculpins on a lake trout spawning reef (Gull Island Shoal) and adjacent nursery area (near Michigan Island) in the Apostle Island region of western Lake Superior during June through September from 1988 through 1991. Organisms in stomachs of 511 lake trout and 562 sculpins were identified and counted. Of the 11 major food types found in age-0 lake trout stomachs from both areas, Mysis was the dominant food item (mean volume in stomachs = 68%) and occurred in about 3/4 of the fish analyzed. Copepods, cladocerans, chironomid pupae, fish, and Bythotrephes were also common in the diet (frequency of occurrence > 4%). Diets of lake trout were more diverse on the reef than on the nursery area where Mysis dominated the diet. Slimy sculpins were only found in lake trout greater than 50 mm. Mysis was an important food item of slimy sculpins over the reef but not over the nursery area, where Diporeia was by far the most important taxon. A variety ofben-thic invertebrates (Asellus, chironomids, benthic copepods, and snails) comprised the bulk of the sculpin diet over the reef. Sculpins also ate lake trout eggs in November. Based on cluster analysis, diets were most similar over the reef where both consumed Mysis, calanoid copepods and chironomid pupae. Diets diverged over the nursery areas where sculpins were strictly benthic feeders and lake trout maintained their planktonic diet. In Lake Superior, where lake trout recruitment through natural reproduction has become well established, the coexistence of the two

  1. Differentiation as symbiosis.

    PubMed

    Chigira, M; Watanabe, H

    1994-07-01

    Preservation of the identity of DNA is the ultimate goal of multicellular organisms. An abnormal DNA sequence in cells within an individual means its parasitic nature in cell society as shown in tumors. Somatic gene arrangement and gene mutation in development may be considered as de novo formation of parasites. It is likely that the developmental process with genetic alterations means symbiosis between altered cells and germ line cells preserving genetic information without alterations, when somatic alteration of DNA sequence is a major mechanism of differentiation. According to the selfish gene theory of Dawkins, germ line cells permit symbiosis when somatic cell society derives clear profit for the replication of original DNA copies. PMID:7968715

  2. The Rhizobium-plant symbiosis.

    PubMed Central

    van Rhijn, P; Vanderleyden, J

    1995-01-01

    Rhizobium, Bradyrhizobium, and Azorhizobium species are able to elicit the formation of unique structures, called nodules, on the roots or stems of the leguminous host. In these nodules, the rhizobia convert atmospheric N2 into ammonia for the plant. To establish this symbiosis, signals are produced early in the interaction between plant and rhizobia and they elicit discrete responses by the two symbiotic partners. First, transcription of the bacterial nodulation (nod) genes is under control of the NodD regulatory protein, which is activated by specific plant signals, flavonoids, present in the root exudates. In return, the nod-encoded enzymes are involved in the synthesis and excretion of specific lipooligosaccharides, which are able to trigger on the host plant the organogenic program leading to the formation of nodules. An overview of the organization, regulation, and function of the nod genes and their participation in the determination of the host specificity is presented. PMID:7708010

  3. Evolutionary Diversification of Prey and Predator Species Facilitated by Asymmetric Interactions

    PubMed Central

    Zu, Jian; Wang, Jinliang; Huang, Gang

    2016-01-01

    We investigate the influence of asymmetric interactions on coevolutionary dynamics of a predator-prey system by using the theory of adaptive dynamics. We assume that the defense ability of prey and the attack ability of predators all can adaptively evolve, either caused by phenotypic plasticity or by behavioral choice, but there are certain costs in terms of their growth rate or death rate. The coevolutionary model is constructed from a deterministic approximation of random mutation-selection process. To sum up, if prey’s trade-off curve is globally weakly concave, then five outcomes of coevolution are demonstrated, which depend on the intensity and shape of asymmetric predator-prey interactions and predator’s trade-off shape. Firstly, we find that if there is a weakly decelerating cost and a weakly accelerating benefit for predator species, then evolutionary branching in the predator species may occur, but after branching further coevolution may lead to extinction of the predator species with a larger trait value. However, if there is a weakly accelerating cost and a weakly accelerating benefit for predator species, then evolutionary branching in the predator species is also possible and after branching the dimorphic predator can evolutionarily stably coexist with a monomorphic prey species. Secondly, if the asymmetric interactions become a little strong, then prey and predators will evolve to an evolutionarily stable equilibrium, at which they can stably coexist on a long-term timescale of evolution. Thirdly, if there is a weakly accelerating cost and a relatively strongly accelerating benefit for prey species, then evolutionary branching in the prey species is possible and the finally coevolutionary outcome contains a dimorphic prey and a monomorphic predator species. Fourthly, if the asymmetric interactions become more stronger, then predator-prey coevolution may lead to cycles in both traits and equilibrium population densities. The Red Queen dynamic is a

  4. Study of cnidarian-algal symbiosis in the "omics" age.

    PubMed

    Meyer, Eli; Weis, Virginia M

    2012-08-01

    The symbiotic associations between cnidarians and dinoflagellate algae (Symbiodinium) support productive and diverse ecosystems in coral reefs. Many aspects of this association, including the mechanistic basis of host-symbiont recognition and metabolic interaction, remain poorly understood. The first completed genome sequence for a symbiotic anthozoan is now available (the coral Acropora digitifera), and extensive expressed sequence tag resources are available for a variety of other symbiotic corals and anemones. These resources make it possible to profile gene expression, protein abundance, and protein localization associated with the symbiotic state. Here we review the history of "omics" studies of cnidarian-algal symbiosis and the current availability of sequence resources for corals and anemones, identifying genes putatively involved in symbiosis across 10 anthozoan species. The public availability of candidate symbiosis-associated genes leaves the field of cnidarian-algal symbiosis poised for in-depth comparative studies of sequence diversity and gene expression and for targeted functional studies of genes associated with symbiosis. Reviewing the progress to date suggests directions for future investigations of cnidarian-algal symbiosis that include (i) sequencing of Symbiodinium, (ii) proteomic analysis of the symbiosome membrane complex, (iii) glycomic analysis of Symbiodinium cell surfaces, and (iv) expression profiling of the gastrodermal cells hosting Symbiodinium. PMID:22983032

  5. Expanding genomics of mycorrhizal symbiosis

    DOE PAGES

    Kuo, Alan; Kohler, Annegret; Martin, Francis M.; Grigoriev, Igor V.

    2014-11-04

    The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolvemore » through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.« less

  6. Expanding genomics of mycorrhizal symbiosis

    SciTech Connect

    Kuo, Alan; Kohler, Annegret; Martin, Francis M.; Grigoriev, Igor V.

    2014-11-04

    The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism.

  7. Expanding genomics of mycorrhizal symbiosis

    PubMed Central

    Kuo, Alan; Kohler, Annegret; Martin, Francis M.; Grigoriev, Igor V.

    2014-01-01

    The mycorrhizal symbiosis between soil fungi and plant roots is a ubiquitous mutualism that plays key roles in plant nutrition, soil health, and carbon cycling. The symbiosis evolved repeatedly and independently as multiple morphotypes [e.g., arbuscular mycorrhizae (AM), ectomycorrhizal (ECM)] in multiple fungal clades (e.g., phyla Glomeromycota, Ascomycota, Basidiomycota). The accessibility and cultivability of many mycorrhizal partners make them ideal models for symbiosis studies. Alongside molecular, physiological, and ecological investigations, sequencing led to the first three mycorrhizal fungal genomes, representing two morphotypes and three phyla. The genome of the ECM basidiomycete Laccaria bicolor showed that the mycorrhizal lifestyle can evolve through loss of plant cell wall-degrading enzymes (PCWDEs) and expansion of lineage-specific gene families such as short secreted protein (SSP) effectors. The genome of the ECM ascomycete Tuber melanosporum showed that the ECM type can evolve without expansion of families as in Laccaria, and thus a different set of symbiosis genes. The genome of the AM glomeromycete Rhizophagus irregularis showed that despite enormous phylogenetic distance and morphological difference from the other two fungi, symbiosis can involve similar solutions as symbiosis-induced SSPs and loss of PCWDEs. The three genomes provide a solid base for addressing fundamental questions about the nature and role of a vital mutualism. PMID:25408690

  8. Symbiosis catalyses niche expansion and diversification

    PubMed Central

    Joy, Jeffrey B.

    2013-01-01

    Interactions between species are important catalysts of the evolutionary processes that generate the remarkable diversity of life. Symbioses, conspicuous and inherently interesting forms of species interaction, are pervasive throughout the tree of life. However, nearly all studies of the impact of species interactions on diversification have concentrated on competition and predation leaving unclear the importance of symbiotic interaction. Here, I show that, as predicted by evolutionary theories of symbiosis and diversification, multiple origins of a key innovation, symbiosis between gall-inducing insects and fungi, catalysed both expansion in resource use (niche expansion) and diversification. Symbiotic lineages have undergone a more than sevenfold expansion in the range of host-plant taxa they use relative to lineages without such fungal symbionts, as defined by the genetic distance between host plants. Furthermore, symbiotic gall-inducing insects are more than 17 times as diverse as their non-symbiotic relatives. These results demonstrate that the evolution of symbiotic interaction leads to niche expansion, which in turn catalyses diversification. PMID:23390106

  9. Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads.

    PubMed

    Frey-Klett, Pascale; Chavatte, Michaël; Clausse, Marie-Lise; Courrier, Sébastien; Le Roux, Christine; Raaijmakers, Jos; Martinotti, Maria Giovanna; Pierrat, Jean-Claude; Garbaye, Jean

    2005-01-01

    Here we characterized the effect of the ectomycorrhizal symbiosis on the genotypic and functional diversity of soil Pseudomonas fluorescens populations and analysed its possible consequences in terms of plant nutrition, development and health. Sixty strains of P. fluorescens were isolated from the bulk soil of a forest nursery, the ectomycorrhizosphere and the ectomycorrhizas of the Douglas fir (Pseudostuga menziesii) seedlings-Laccaria bicolor S238N. They were characterized in vitro with the following criteria: ARDRA, phosphate solubilization, siderophore, HCN and AIA production, genes of N2-fixation and antibiotic synthesis, in vitro confrontation with a range of phytopathogenic and ectomycorrhizal fungi, effect on the Douglas fir-L. bicolor symbiosis. For most of these criteria, we demonstrated that the ectomycorrhizosphere significantly structures the P. fluorescens populations and selects strains potentially beneficial to the symbiosis and to the plant. This prompts us to propose the ectomycorrhizal symbiosis as a true microbial complex where multitrophic interactions take place. Moreover it underlines the fact that this symbiosis has an indirect positive effect on plant growth, via its selective pressure on bacterial communities, in addition to its known direct positive effect. PMID:15720643

  10. Interaction intimacy organizes networks of antagonistic interactions in different ways.

    PubMed

    Pires, Mathias M; Guimarães, Paulo R

    2013-01-01

    Interaction intimacy, the degree of biological integration between interacting individuals, shapes the ecology and evolution of species interactions. A major question in ecology is whether interaction intimacy also shapes the way interactions are organized within communities. We combined analyses of network structure and food web models to test the role of interaction intimacy in determining patterns of antagonistic interactions, such as host-parasite, predator-prey and plant-herbivore interactions. Networks describing interactions with low intimacy were more connected, more nested and less modular than high-intimacy networks. Moreover, the performance of the models differed across networks with different levels of intimacy. All models reproduced well low-intimacy networks, whereas the more elaborate models were also capable of reproducing networks depicting interactions with higher levels of intimacy. Our results indicate the key role of interaction intimacy in organizing antagonisms, suggesting that greater interaction intimacy might be associated with greater complexity in the assembly rules shaping ecological networks.

  11. Symbiosis, Empathy, Suicidal Behavior, and the Family.

    ERIC Educational Resources Information Center

    Richman, Joseph

    1978-01-01

    This paper discusses the theoretical concept of symbiosis, as described by Mahler and her co-workers, and its clinical applications in suicidal situations. Also, the practical implications of the concept of symbiosis for assessment and treatment are discussed (Author)

  12. Evolving together: the biology of symbiosis, part 1

    PubMed Central

    2000-01-01

    Symbioses, prolonged associations between organisms often widely separated phylogenetically, are more common in biology than we once thought and have been neglected as a phenomenon worthy of study on its own merits. Extending along a dynamic continuum from antagonistic to cooperative and often involving elements of both antagonism and mutualism, symbioses involve pathogens, commensals, and mutualists interacting in myriad ways over the evolutionary history of the involved “partners.” In this first of 2 parts, some remarkable examples of symbiosis will be explored, from the coral-algal symbiosis and nitrogen fixation to the great diversity of dietary specializations enabled by the gastrointestinal microbiota of animals. PMID:16389385

  13. Symbiosis in Paramecium Bursaria.

    PubMed

    Karakashian, M W

    1975-01-01

    Paramecium bursaria normally appears green dut to several hundred symbiotic Chlorella which are dispersed throughout its cytoplasm. The symbionts are situated within individual vacuoles and these alga-vacuole complexes grow and divide at a rate compatible with that of the paramecium. The symbiotic units also persist through conjugation and the subsequent reorganization of the host. Studies of the benefit of the symbiosis to the ciliate hosts have shown that they are able to grow and survive better than aposymbiotic animals in environments deficient in bacteria. The symbionts are also able to extract nourishment from the host when it is well fed and they are deprived of light. The biochemical nature of these exchanges has not been determined. Potential symbionts usually enter the host in food vacuoles. If they are ingested in sufficient numbers, they are able to interfere with the normal course of host digestion, perhaps by preventing the release of digestive enzymes into the food vacuole. All natural symbionts of P. bursaria appear able to reinfect aposymbiotic cells. Some freeliving strains of Chlorella and related algae are also infective, but these associations are relatively unstable and provide little evident benefit to the host. Host susceptibility to infection by certain strains of free-living algae is invariably lost with time. This loss is specific and often rapid, but it does not occur simultaneously in subcultures derived from the original susceptible culture. The basis for these susceptibility changes is still unknown, but they may be related to long-lasting effect of the previous symbionts on the digestive efficiency of the paramecium host. PMID:785659

  14. Auxin influences strigolactones in pea mycorrhizal symbiosis.

    PubMed

    Foo, E

    2013-03-15

    Hormone interactions are essential for the control of many developmental processes, including intracellular symbioses. The interaction between auxin and the new plant hormone strigolactone in the regulation of arbuscular mycorrhizal symbiosis was examined in one of the few auxin deficient mutants available in a mycorrhizal species, the auxin-deficient bsh mutant of pea (Pisum sativum). Mycorrhizal colonisation with the fungus Glomus intraradices was significantly reduced in the low auxin bsh mutant. The bsh mutant also exhibited a reduction in strigolactone exudation and the expression of a key strigolactone biosynthesis gene (PsCCD8). Strigolactone exudation was also reduced in wild type plants when the auxin content was reduced by stem girdling. Low strigolactone levels appear to be at least partially responsible for the reduced colonisation of the bsh mutant, as application of the synthetic strigolactone GR24 could partially rescue the mycorrhizal phenotype of bsh mutants. Data presented here indicates root auxin content was correlated with strigolactone exudation in both mutant and wild type plants. Mutant studies suggest that auxin may regulate early events in the formation of arbuscular mycorrhizal symbiosis by controlling strigolactone levels, both in the rhizosphere and possibly during early root colonisation. PMID:23219475

  15. Sugar for my honey: carbohydrate partitioning in ectomycorrhizal symbiosis.

    PubMed

    Nehls, Uwe; Grunze, Nina; Willmann, Martin; Reich, Marlis; Küster, Helge

    2007-01-01

    Simple, readily utilizable carbohydrates, necessary for growth and maintenance of large numbers of microbes are rare in forest soils. Among other types of mutualistic interactions, the formation of ectomycorrhizas, a symbiosis between tree roots and certain soil fungi, is a way to overcome nutrient and carbohydrate limitations typical for many forest ecosystems. Ectomycorrhiza formation is typical for trees in boreal and temperate forests of the northern hemisphere and alpine regions world-wide. The main function of this symbiosis is the exchange of fungus-derived nutrients for plant-derived carbohydrates, enabling the colonization of mineral nutrient-poor environments. In ectomycorrhizal symbiosis up to 1/3 of plant photoassimilates could be transferred toward the fungal partner. The creation of such a strong sink is directly related to the efficiency of fungal hexose uptake at the plant/fungus interface, a modulated fungal carbohydrate metabolism in the ectomycorrhiza, and the export of carbohydrates towards soil growing hyphae. However, not only the fungus but also the plant partner increase its expression of hexose importer genes at the plant/fungus interface. This increase in hexose uptake capacity of plant roots in combination with an increase in photosynthesis may explain how the plant deals with the growing fungal carbohydrate demand in symbiosis and how it can restrict this loss of carbohydrates under certain conditions to avoid fungal parasitism. PMID:17078984

  16. Evolution of symbiosis with resource allocation from fecundity to survival

    NASA Astrophysics Data System (ADS)

    Fukui, Shin

    2014-05-01

    Symbiosis is one of the most fundamental relationships between or among organisms and includes parasitism (which has negative effects on the fitness of the interacting partner), commensalism (no effect), and mutualism (positive effects). The effects of these interactions are usually assumed to influence a single component of a species' fitness, either survival or fecundity, even though in reality the interaction can simultaneously affect both of these components. I used a dual lattice model to investigate the process of evolution of mutualistic symbiosis in the presence of interactive effects on both survival and fecundity. I demonstrate that a positive effect on survival and a negative effect on fecundity are key to the establishment of mutualism. Furthermore, both the parasitic and the mutualistic behaviour must carry large costs for mutualism to evolve. This helps develop a new understanding of symbiosis as a function of resource allocation, in which resources are shifted from fecundity to survival. The simultaneous establishment of mutualism from parasitism never occurs in two species, but can do so in one of the species as long as the partner still behaves parasitically. This suggests that one of the altruistic behaviours in a mutualistic unit consisting of two species must originate as a parasitic behaviour.

  17. Evolution of symbiosis with resource allocation from fecundity to survival.

    PubMed

    Fukui, Shin

    2014-05-01

    Symbiosis is one of the most fundamental relationships between or among organisms and includes parasitism (which has negative effects on the fitness of the interacting partner), commensalism (no effect), and mutualism (positive effects). The effects of these interactions are usually assumed to influence a single component of a species' fitness, either survival or fecundity, even though in reality the interaction can simultaneously affect both of these components. I used a dual lattice model to investigate the process of evolution of mutualistic symbiosis in the presence of interactive effects on both survival and fecundity. I demonstrate that a positive effect on survival and a negative effect on fecundity are key to the establishment of mutualism. Furthermore, both the parasitic and the mutualistic behaviour must carry large costs for mutualism to evolve. This helps develop a new understanding of symbiosis as a function of resource allocation, in which resources are shifted from fecundity to survival. The simultaneous establishment of mutualism from parasitism never occurs in two species, but can do so in one of the species as long as the partner still behaves parasitically. This suggests that one of the altruistic behaviours in a mutualistic unit consisting of two species must originate as a parasitic behaviour.

  18. Microalgal symbiosis in biotechnology.

    PubMed

    Santos, Carla A; Reis, Alberto

    2014-07-01

    This review provides an analysis of recent published work on interactions between microorganisms, especially the ones involving mainly nutrient exchanges and at least with one microalga species. Examples of microbial partners are given, with a remark to the potential application of cultures of an autotroph and a heterotroph, which grow simultaneously, taking advantage of the complementary metabolisms. These are particularly interesting, either due to economic or sustainable aspects, and some applications have already reached the commercial stage of development. The added advantages of these symbiotic cultures are biomass, lipid, and other products productivity enhancement a better utilization of resources and the reduction or even elimination of process residues (including carbon dioxide and other greenhouse gases) to conduct an increasingly greener biotechnology. Among the several symbiotic partners referred, the microalgae and yeast cultures are the most used. The interaction between these two microorganisms shows how to enhance the lipid production for biodiesel purposes compared with separated (stand-alone) cultures.

  19. Microalgal symbiosis in biotechnology.

    PubMed

    Santos, Carla A; Reis, Alberto

    2014-07-01

    This review provides an analysis of recent published work on interactions between microorganisms, especially the ones involving mainly nutrient exchanges and at least with one microalga species. Examples of microbial partners are given, with a remark to the potential application of cultures of an autotroph and a heterotroph, which grow simultaneously, taking advantage of the complementary metabolisms. These are particularly interesting, either due to economic or sustainable aspects, and some applications have already reached the commercial stage of development. The added advantages of these symbiotic cultures are biomass, lipid, and other products productivity enhancement a better utilization of resources and the reduction or even elimination of process residues (including carbon dioxide and other greenhouse gases) to conduct an increasingly greener biotechnology. Among the several symbiotic partners referred, the microalgae and yeast cultures are the most used. The interaction between these two microorganisms shows how to enhance the lipid production for biodiesel purposes compared with separated (stand-alone) cultures. PMID:24816618

  20. PtSRR1, a putative Pisolithus tinctorius symbiosis related receptor gene is expressed during the first hours of mycorrhizal interaction with Castanea sativa roots.

    PubMed

    Acioli-Santos, B; Malosso, E; Calzavara-Silva, C E; Lima, C E P; Figueiredo, A; Sebastiana, M; Pais, M S

    2009-04-01

    PtSRR1 EST was previously identified in the first hours of Pisolithus tinctorius and Castanea sativa interaction. QRT-PCR confirmed PtSRR1 early expression and in silico preliminary translated peptide analysis indicated a strong probability that PtSRR1 be a transmembrane protein. These data stimulate the PtSRR1 gene research during ectomycorrhiza formation.

  1. Coral Reef Genomics: Developing tools for functional genomics ofcoral symbiosis

    SciTech Connect

    Schwarz, Jodi; Brokstein, Peter; Manohar, Chitra; Coffroth, MaryAlice; Szmant, Alina; Medina, Monica

    2005-03-01

    Symbioses between cnidarians and dinoflagellates in the genus Symbiodinium are widespread in the marine environment. The importance of this symbiosis to reef-building corals and reef nutrient and carbon cycles is well documented, but little is known about the mechanisms by which the partners establish and regulate the symbiosis. Because the dinoflagellate symbionts live inside the cells of their host coral, the interactions between the partners occur on cellular and molecular levels, as each partner alters the expression of genes and proteins to facilitate the partnership. These interactions can examined using high-throughput techniques that allow thousands of genes to be examined simultaneously. We are developing the groundwork so that we can use DNA microarray profiling to identify genes involved in the Montastraea faveolata and Acropora palmata symbioses. Here we report results from the initial steps in this microarray initiative, that is, the construction of cDNA libraries from 4 of 16 target stages, sequencing of 3450 cDNA clones to generate Expressed Sequenced Tags (ESTs), and annotation of the ESTs to identify candidate genes to include in the microarrays. An understanding of how the coral-dinoflagellate symbiosis is regulated will have implications for atmospheric and ocean sciences, conservation biology, the study and diagnosis of coral bleaching and disease, and comparative studies of animal-protest interactions.

  2. Brain-Computer Symbiosis

    PubMed Central

    Schalk, Gerwin

    2009-01-01

    The theoretical groundwork of the 1930’s and 1940’s and the technical advance of computers in the following decades provided the basis for dramatic increases in human efficiency. While computers continue to evolve, and we can still expect increasing benefits from their use, the interface between humans and computers has begun to present a serious impediment to full realization of the potential payoff. This article is about the theoretical and practical possibility that direct communication between the brain and the computer can be used to overcome this impediment by improving or augmenting conventional forms of human communication. It is about the opportunity that the limitations of our body’s input and output capacities can be overcome using direct interaction with the brain, and it discusses the assumptions, possible limitations, and implications of a technology that I anticipate will be a major source of pervasive changes in the coming decades. PMID:18310804

  3. Cell Biology of Cnidarian-Dinoflagellate Symbiosis

    PubMed Central

    Allemand, Denis; Weis, Virginia M.

    2012-01-01

    Summary: The symbiosis between cnidarians (e.g., corals or sea anemones) and intracellular dinoflagellate algae of the genus Symbiodinium is of immense ecological importance. In particular, this symbiosis promotes the growth and survival of reef corals in nutrient-poor tropical waters; indeed, coral reefs could not exist without this symbiosis. However, our fundamental understanding of the cnidarian-dinoflagellate symbiosis and of its links to coral calcification remains poor. Here we review what we currently know about the cell biology of cnidarian-dinoflagellate symbiosis. In doing so, we aim to refocus attention on fundamental cellular aspects that have been somewhat neglected since the early to mid-1980s, when a more ecological approach began to dominate. We review the four major processes that we believe underlie the various phases of establishment and persistence in the cnidarian/coral-dinoflagellate symbiosis: (i) recognition and phagocytosis, (ii) regulation of host-symbiont biomass, (iii) metabolic exchange and nutrient trafficking, and (iv) calcification. Where appropriate, we draw upon examples from a range of cnidarian-alga symbioses, including the symbiosis between green Hydra and its intracellular chlorophyte symbiont, which has considerable potential to inform our understanding of the cnidarian-dinoflagellate symbiosis. Ultimately, we provide a comprehensive overview of the history of the field, its current status, and where it should be going in the future. PMID:22688813

  4. A novel reef coral symbiosis

    NASA Astrophysics Data System (ADS)

    Pantos, O.; Bythell, J. C.

    2010-09-01

    Reef building corals form close associations with unicellular microalgae, fungi, bacteria and archaea, some of which are symbiotic and which together form the coral holobiont. Associations with multicellular eukaryotes such as polychaete worms, bivalves and sponges are not generally considered to be symbiotic as the host responds to their presence by forming physical barriers with an active growth edge in the exoskeleton isolating the invader and, at a subcellular level, activating innate immune responses such as melanin deposition. This study describes a novel symbiosis between a newly described hydrozoan ( Zanclea margaritae sp. nov.) and the reef building coral Acropora muricata (= A. formosa), with the hydrozoan hydrorhiza ramifying throughout the coral tissues with no evidence of isolation or activation of the immune systems of the host. The hydrorhiza lacks a perisarc, which is typical of symbiotic species of this and related genera, including species that associate with other cnidarians such as octocorals. The symbiosis was observed at all sites investigated from two distant locations on the Great Barrier Reef, Australia, and appears to be host species specific, being found only in A. muricata and in none of 30 other species investigated at these sites. Not all colonies of A. muricata host the hydrozoans and both the prevalence within the coral population (mean = 66%) and density of emergent hydrozoan hydranths on the surface of the coral (mean = 4.3 cm-2, but up to 52 cm-2) vary between sites. The form of the symbiosis in terms of the mutualism-parasitism continuum is not known, although the hydrozoan possesses large stenotele nematocysts, which may be important for defence from predators and protozoan pathogens. This finding expands the known A. muricata holobiont and the association must be taken into account in future when determining the corals’ abilities to defend against predators and withstand stress.

  5. A secondary symbiosis in progress?

    PubMed

    Okamoto, Noriko; Inouye, Isao

    2005-10-14

    Algae have acquired plastids by developing an endosymbiotic relationship with either a cyanobacterium (primary endosymbiosis) or other eukaryotic algae (secondary endosymbiosis). We report a protist, which we tentatively refer to as Hatena, that hosts an endosymbiotic green algal partner but inherits it unevenly. The endosymbiosis causes drastic morphological changes to both the symbiont and the host cell architecture. This type of life cycle, in which endosymbiont integration has only partially converted the host from predator to autotroph, may represent an early stage of plastid acquisition through secondary symbiosis. PMID:16224014

  6. Sensory information and encounter rates of interacting species.

    PubMed

    Hein, Andrew M; McKinley, Scott A

    2013-01-01

    Most motile organisms use sensory cues when searching for resources, mates, or prey. The searcher measures sensory data and adjusts its search behavior based on those data. Yet, classical models of species encounter rates assume that searchers move independently of their targets. This assumption leads to the familiar mass action-like encounter rate kinetics typically used in modeling species interactions. Here we show that this common approach can mischaracterize encounter rate kinetics if searchers use sensory information to search actively for targets. We use the example of predator-prey interactions to illustrate that predators capable of long-distance directional sensing can encounter prey at a rate proportional to prey density to the [Formula: see text] power (where [Formula: see text] is the dimension of the environment) when prey density is low. Similar anomalous encounter rate functions emerge even when predators pursue prey using only noisy, directionless signals. Thus, in both the high-information extreme of long-distance directional sensing, and the low-information extreme of noisy non-directional sensing, encounter rate kinetics differ qualitatively from those derived by classic theory of species interactions. Using a standard model of predator-prey population dynamics, we show that the new encounter rate kinetics derived here can change the outcome of species interactions. Our results demonstrate how the use of sensory information can alter the rates and outcomes of physical interactions in biological systems.

  7. The evolution of specificity in the legume-rhizobium symbiosis.

    PubMed

    Young, J P; Johnston, A W

    1989-11-01

    We know more about the partnership between legumes and their root-nodule bacteria than about any other symbiosis or any other plant-microbe interaction. In the light of recent research we are beginning to see details of an elaborate tapestry. The rhizobia are not a self-contained branch on the bacterial tree; their ancestry is intertwined with that of photosynthetic and pathogenic bacteria. Their host ranges, which vary enormously in breadth, overlap to form a tangled web of interconnections between plants and bacteria, and mechanisms of infection and nodule development are more diverse than we once thought. From genetic analysis of the bacteria we learn that specificity is not the province of special 'host-range determinants', but is affected by a wide range of genes with diverse modes of action. The symbiosis is a rich resource for evolutionary fact and speculation, but its complexity and diversity should warn us not to expect easy answers.

  8. Phosphorus and Nitrogen Regulate Arbuscular Mycorrhizal Symbiosis in Petunia hybrida

    PubMed Central

    Nouri, Eva; Breuillin-Sessoms, Florence; Feller, Urs; Reinhardt, Didier

    2014-01-01

    Phosphorus and nitrogen are essential nutrient elements that are needed by plants in large amounts. The arbuscular mycorrhizal symbiosis between plants and soil fungi improves phosphorus and nitrogen acquisition under limiting conditions. On the other hand, these nutrients influence root colonization by mycorrhizal fungi and symbiotic functioning. This represents a feedback mechanism that allows plants to control the fungal symbiont depending on nutrient requirements and supply. Elevated phosphorus supply has previously been shown to exert strong inhibition of arbuscular mycorrhizal development. Here, we address to what extent inhibition by phosphorus is influenced by other nutritional pathways in the interaction between Petunia hybrida and R. irregularis. We show that phosphorus and nitrogen are the major nutritional determinants of the interaction. Interestingly, the symbiosis-promoting effect of nitrogen starvation dominantly overruled the suppressive effect of high phosphorus nutrition onto arbuscular mycorrhiza, suggesting that plants promote the symbiosis as long as they are limited by one of the two major nutrients. Our results also show that in a given pair of symbiotic partners (Petunia hybrida and R. irregularis), the entire range from mutually symbiotic to parasitic can be observed depending on the nutritional conditions. Taken together, these results reveal complex nutritional feedback mechanisms in the control of root colonization by arbuscular mycorrhizal fungi. PMID:24608923

  9. Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis.

    PubMed

    Gomez, S Karen; Harrison, Maria J

    2009-05-01

    Phosphorus is essential for plant growth, and in many soils phosphorus availability limits crop production. Most plants in natural ecosystems obtain phosphorus via a symbiotic partnership with arbuscular mycorrhizal (AM) fungi. While the significance of these associations is apparent, their molecular basis is poorly understood. Consequently, the potential to harness the mycorrhizal symbiosis to improve phosphorus nutrition in agriculture is not realized. Transcript profiling has recently been used to investigate gene expression changes that accompany development of the AM symbiosis. While these approaches have enabled the identification of AM-symbiosis-associated genes, they have generally involved the use of RNA from whole mycorrhizal roots. Laser microdissection techniques allow the dissection and capture of individual cells from a tissue. RNA can then be isolated from these samples and cell-type specific gene expression information can be obtained. This technology has been applied to obtain cells from plants and more recently to study plant-microbe interactions. The latter techniques, particularly those developed for root-microbe interactions, are of relevance to plant-parasitic weed research. Here, laser microdissection, its use in plant biology and in particular plant-microbe interactions are discussed. An overview of the AM symbiosis is then provided, with a focus on recent advances in understanding development of the arbuscule-cortical cell interface. Finally, the recent applications of laser microdissection for analyses of AM symbiosis are discussed.

  10. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

    SciTech Connect

    Martin, F.; Aerts, A.; Ahren, D.; Brun, A.; Danchin, E. G. J.; Duchaussoy, F.; Gibon, J.; Kohler, A.; Lindquist, E.; Peresa, V.; Salamov, A.; Shapiro, H. J.; Wuyts, J.; Blaudez, D.; Buee, M.; Brokstein, P.; Canback, B.; Cohen, D.; Courty, P. E.; Coutinho, P. M.; Delaruelle, C.; Detter, J. C.; Deveau, A.; DiFazio, S.; Duplessis, S.; Fraissinet-Tachet, L.; Lucic, E.; Frey-Klett, P.; Fourrey, C.; Feussner, I.; Gay, G.; Grimwood, J.; Hoegger, P. J.; Jain, P.; Kilaru, S.; Labbe, J.; Lin, Y. C.; Legue, V.; Le Tacon, F.; Marmeisse, R.; Melayah, D.; Montanini, B.; Muratet, M.; Nehls, U.; Niculita-Hirzel, H.; Secq, M. P. Oudot-Le; Peter, M.; Quesneville, H.; Rajashekar, B.; Reich, M.; Rouhier, N.; Schmutz, J.; Yin, T.; Chalot, M.; Henrissat, B.; Kues, U.; Lucas, S.; Van de Peer, Y.; Podila, G. K.; Polle, A.; Pukkila, P. J.; Richardson, P. M.; Rouze, P.; Sanders, I. R.; Stajich, J. E.; Tunlid, A.; Tuskan, G.; Grigoriev, I. V.

    2007-08-10

    Mycorrhizal symbioses the union of roots and soil fungi are universal in terrestrial ecosystems and may have been fundamental to land colonization by plants 1, 2. Boreal, temperate and montane forests all depend on ectomycorrhizae1. Identification of the primary factors that regulate symbiotic development and metabolic activity will therefore open the door to understanding the role of ectomycorrhizae in plant development and physiology, allowing the full ecological significance of this symbiosis to be explored. Here we report the genome sequence of the ectomycorrhizal basidiomycete Laccaria bicolor (Fig. 1) and highlight gene sets involved in rhizosphere colonization and symbiosis. This 65-megabase genome assembly contains 20,000 predicted protein-encoding genes and a very large number of transposons and repeated sequences. We detected unexpected genomic features, most notably a battery of effector-type small secreted proteins (SSPs) with unknown function, several of which are only expressed in symbiotic tissues. The most highly expressed SSP accumulates in the proliferating hyphae colonizing the host root. The ectomycorrhizae-specific SSPs probably have a decisive role in the establishment of the symbiosis. The unexpected observation that the genome of L. bicolor lacks carbohydrate-active enzymes involved in degradation of plant cell walls, but maintains the ability to degrade non-plant cell wall polysaccharides, reveals the dual saprotrophic and biotrophic lifestyle of the mycorrhizal fungus that enables it to grow within both soil and living plant roots. The predicted gene inventory of the L. bicolor genome, therefore, points to previously unknown mechanisms of symbiosis operating in biotrophic mycorrhizal fungi. The availability of this genome provides an unparalleled opportunity to develop a deeper understanding of the processes by which symbionts interact with plants within their ecosystem to perform vital functions in the carbon and nitrogen cycles that are

  11. Consequences of symbiosis for food web dynamics.

    PubMed

    Kooi, B W; Kuijper, L D J; Kooijman, S A L M

    2004-09-01

    Basic Lotka-Volterra type models in which mutualism (a type of symbiosis where the two populations benefit both) is taken into account, may give unbounded solutions. We exclude such behaviour using explicit mass balances and study the consequences of symbiosis for the long-term dynamic behaviour of a three species system, two prey and one predator species in the chemostat. We compose a theoretical food web where a predator feeds on two prey species that have a symbiotic relationships. In addition to a species-specific resource, the two prey populations consume the products of the partner population as well. In turn, a common predator forages on these prey populations. The temporal change in the biomass and the nutrient densities in the reactor is described by ordinary differential equations (ODE). Since products are recycled, the dynamics of these abiotic materials must be taken into account as well, and they are described by odes in a similar way as the abiotic nutrients. We use numerical bifurcation analysis to assess the long-term dynamic behaviour for varying degrees of symbiosis. Attractors can be equilibria, limit cycles and chaotic attractors depending on the control parameters of the chemostat reactor. These control parameters that can be experimentally manipulated are the nutrient density of the inflow medium and the dilution rate. Bifurcation diagrams for the three species web with a facultative symbiotic association between the two prey populations, are similar to that of a bi-trophic food chain; nutrient enrichment leads to oscillatory behaviour. Predation combined with obligatory symbiotic prey-interactions has a stabilizing effect, that is, there is stable coexistence in a larger part of the parameter space than for a bi-trophic food chain. However, combined with a large growth rate of the predator, the food web can persist only in a relatively small region of the parameter space. Then, two zero-pair bifurcation points are the organizing centers. In

  12. Impact of simulated microgravity on the normal developmental time line of an animal-bacteria symbiosis

    PubMed Central

    Foster, Jamie S.; Khodadad, Christina L. M.; Ahrendt, Steven R.; Parrish, Mirina L.

    2013-01-01

    The microgravity environment during space flight imposes numerous adverse effects on animal and microbial physiology. It is unclear, however, how microgravity impacts those cellular interactions between mutualistic microbes and their hosts. Here, we used the symbiosis between the host squid Euprymna scolopes and its luminescent bacterium Vibrio fischeri as a model system. We examined the impact of simulated microgravity on the timeline of bacteria-induced development in the host light organ, the site of the symbiosis. To simulate the microgravity environment, host squid and symbiosis-competent bacteria were incubated together in high-aspect ratio rotating wall vessel bioreactors and examined throughout the early stages of the bacteria-induced morphogenesis. The host innate immune response was suppressed under simulated microgravity; however, there was an acceleration of bacteria-induced apoptosis and regression in the host tissues. These results suggest that the space flight environment may alter the cellular interactions between animal hosts and their natural healthy microbiome. PMID:23439280

  13. Impact of simulated microgravity on the normal developmental time line of an animal-bacteria symbiosis.

    PubMed

    Foster, Jamie S; Khodadad, Christina L M; Ahrendt, Steven R; Parrish, Mirina L

    2013-01-01

    The microgravity environment during space flight imposes numerous adverse effects on animal and microbial physiology. It is unclear, however, how microgravity impacts those cellular interactions between mutualistic microbes and their hosts. Here, we used the symbiosis between the host squid Euprymna scolopes and its luminescent bacterium Vibrio fischeri as a model system. We examined the impact of simulated microgravity on the timeline of bacteria-induced development in the host light organ, the site of the symbiosis. To simulate the microgravity environment, host squid and symbiosis-competent bacteria were incubated together in high-aspect ratio rotating wall vessel bioreactors and examined throughout the early stages of the bacteria-induced morphogenesis. The host innate immune response was suppressed under simulated microgravity; however, there was an acceleration of bacteria-induced apoptosis and regression in the host tissues. These results suggest that the space flight environment may alter the cellular interactions between animal hosts and their natural healthy microbiome. PMID:23439280

  14. Metabolic constraints for a novel symbiosis

    PubMed Central

    Sørensen, Megan E. S.; Cameron, Duncan D.; Brockhurst, Michael A.; Wood, A. Jamie

    2016-01-01

    Ancient evolutionary events are difficult to study because their current products are derived forms altered by millions of years of adaptation. The primary endosymbiotic event formed the first photosynthetic eukaryote resulting in both plants and algae, with vast consequences for life on Earth. The evolutionary time that passed since this event means the dominant mechanisms and changes that were required are obscured. Synthetic symbioses such as the novel interaction between Paramecium bursaria and the cyanobacterium Synechocystis PC6803, recently established in the laboratory, permit a unique window on the possible early trajectories of this critical evolutionary event. Here, we apply metabolic modelling, using flux balance analysis (FBA), to predict the metabolic adaptations necessary for this previously free-living symbiont to transition to the endosymbiotic niche. By enforcing reciprocal nutrient trading, we are able to predict the most efficient exchange nutrients for both host and symbiont. During the transition from free-living to obligate symbiosis, it is likely that the trading parameters will change over time, which leads in our model to discontinuous changes in the preferred exchange nutrients. Our results show the applicability of FBA modelling to ancient evolutionary transitions driven by metabolic exchanges, and predict how newly established endosymbioses, governed by conflict, will differ from a well-developed one that has reached a mutual-benefit state. PMID:27069664

  15. Metabolic constraints for a novel symbiosis.

    PubMed

    Sørensen, Megan E S; Cameron, Duncan D; Brockhurst, Michael A; Wood, A Jamie

    2016-03-01

    Ancient evolutionary events are difficult to study because their current products are derived forms altered by millions of years of adaptation. The primary endosymbiotic event formed the first photosynthetic eukaryote resulting in both plants and algae, with vast consequences for life on Earth. The evolutionary time that passed since this event means the dominant mechanisms and changes that were required are obscured. Synthetic symbioses such as the novel interaction between Paramecium bursaria and the cyanobacterium Synechocystis PC6803, recently established in the laboratory, permit a unique window on the possible early trajectories of this critical evolutionary event. Here, we apply metabolic modelling, using flux balance analysis (FBA), to predict the metabolic adaptations necessary for this previously free-living symbiont to transition to the endosymbiotic niche. By enforcing reciprocal nutrient trading, we are able to predict the most efficient exchange nutrients for both host and symbiont. During the transition from free-living to obligate symbiosis, it is likely that the trading parameters will change over time, which leads in our model to discontinuous changes in the preferred exchange nutrients. Our results show the applicability of FBA modelling to ancient evolutionary transitions driven by metabolic exchanges, and predict how newly established endosymbioses, governed by conflict, will differ from a well-developed one that has reached a mutual-benefit state. PMID:27069664

  16. DELLA proteins regulate expression of a subset of AM symbiosis-induced genes in Medicago truncatula

    PubMed Central

    Floss, Daniela S.; Lévesque-Tremblay, Véronique; Park, Hee-Jin; Harrison, Maria J.

    2016-01-01

    ABSTRACT The majority of the vascular flowering plants form symbiotic associations with fungi from the phylum Glomeromycota through which both partners gain access to nutrients, either mineral nutrients in the case of the plant, or carbon, in the case of the fungus.1 The association develops in the roots and requires substantial remodeling of the root cortical cells where branched fungal hyphae, called arbuscules, are housed in a new membrane-bound apoplastic compartment.2 Nutrient exchange between the symbionts occurs over this interface and its development and maintenance is critical for symbiosis. Previously, we showed that DELLA proteins, which are well known as repressors of gibberellic acid signaling, also regulate development of AM symbiosis and are necessary to enable arbuscule development.3 Furthermore, constitutive overexpression of a dominant DELLA protein (della1-Δ18) is sufficient to induce transcripts of several AM symbiosis-induced genes, even in the absence of the fungal symbiont.4 Here we further extend this approach and identify AM symbiosis genes that respond transcriptionally to constitutive expression of a dominant DELLA protein and also genes that do respond to this treatment. Additionally, we demonstrate that DELLAs interact with REQUIRED FOR ARBUSCULE DEVELOPMENT 1 (RAD1) which further extends our knowledge of GRAS factor complexes that have the potential to regulate gene expression during AM symbiosis. PMID:26984507

  17. DELLA proteins regulate expression of a subset of AM symbiosis-induced genes in Medicago truncatula.

    PubMed

    Floss, Daniela S; Lévesque-Tremblay, Véronique; Park, Hee-Jin; Harrison, Maria J

    2016-01-01

    The majority of the vascular flowering plants form symbiotic associations with fungi from the phylum Glomeromycota through which both partners gain access to nutrients, either mineral nutrients in the case of the plant, or carbon, in the case of the fungus. (1) The association develops in the roots and requires substantial remodeling of the root cortical cells where branched fungal hyphae, called arbuscules, are housed in a new membrane-bound apoplastic compartment. (2) Nutrient exchange between the symbionts occurs over this interface and its development and maintenance is critical for symbiosis. Previously, we showed that DELLA proteins, which are well known as repressors of gibberellic acid signaling, also regulate development of AM symbiosis and are necessary to enable arbuscule development. (3) Furthermore, constitutive overexpression of a dominant DELLA protein (della1-Δ18) is sufficient to induce transcripts of several AM symbiosis-induced genes, even in the absence of the fungal symbiont. (4) Here we further extend this approach and identify AM symbiosis genes that respond transcriptionally to constitutive expression of a dominant DELLA protein and also genes that do respond to this treatment. Additionally, we demonstrate that DELLAs interact with REQUIRED FOR ARBUSCULE DEVELOPMENT 1 (RAD1) which further extends our knowledge of GRAS factor complexes that have the potential to regulate gene expression during AM symbiosis.

  18. Differential spatio-temporal expression of carotenoid cleavage dioxygenases regulates apocarotenoid fluxes during AM symbiosis.

    PubMed

    López-Ráez, Juan A; Fernández, Iván; García, Juan M; Berrio, Estefanía; Bonfante, Paola; Walter, Michael H; Pozo, María J

    2015-01-01

    Apocarotenoids are a class of compounds that play important roles in nature. In recent years, a prominent role for these compounds in arbuscular mycorrhizal (AM) symbiosis has been shown. They are derived from carotenoids by the action of the carotenoid cleavage dioxygenase (CCD) enzyme family. In the present study, using tomato as a model, the spatio-temporal expression pattern of the CCD genes during AM symbiosis establishment and functioning was investigated. In addition, the levels of the apocarotenoids strigolactones (SLs), C13 α-ionol and C14 mycorradicin (C13/C14) derivatives were analyzed. The results suggest an increase in SLs promoted by the presence of the AM fungus at the early stages of the interaction, which correlated with an induction of the SL biosynthesis gene SlCCD7. At later stages, induction of SlCCD7 and SlCCD1 expression in arbusculated cells promoted the production of C13/C14 apocarotenoid derivatives. We show here that the biosynthesis of apocarotenoids during AM symbiosis is finely regulated throughout the entire process at the gene expression level, and that CCD7 constitutes a key player in this regulation. Once the symbiosis is established, apocarotenoid flux would be turned towards the production of C13/C14 derivatives, thus reducing SL biosynthesis and maintaining a functional symbiosis.

  19. Spatial Geographic Mosaic in an Aquatic Predator-Prey Network

    PubMed Central

    Chaves-Campos, Johel; Johnson, Steven G.; Hulsey, C. Darrin

    2011-01-01

    The geographic mosaic theory of coevolution predicts 1) spatial variation in predatory structures as well as prey defensive traits, and 2) trait matching in some areas and trait mismatching in others mediated by gene flow. We examined gene flow and documented spatial variation in crushing resistance in the freshwater snails Mexipyrgus churinceanus, Mexithauma quadripaludium, Nymphophilus minckleyi, and its relationship to the relative frequency of the crushing morphotype in the trophically polymorphic fish Herichthys minckleyi. Crushing resistance and the frequency of the crushing morphotype did show spatial variation among 11 naturally replicated communities in the Cuatro Ciénegas valley in Mexico where these species are all endemic. The variation in crushing resistance among populations was not explained by geographic proximity or by genetic similarity in any species. We detected clear phylogeographic patterns and limited gene flow for the snails but not for the fish. Gene flow among snail populations in Cuatro Ciénegas could explain the mosaic of local divergence in shell strength and be preventing the fixation of the crushing morphotype in Herichthys minckleyi. Finally, consistent with trait matching across the mosaic, the frequency of the fish morphotype was negatively correlated with shell crushing resistance likely reflecting the relative disadvantage of the crushing morphotype in communities where the snails exhibit relatively high crushing resistance. PMID:21799865

  20. Ocean acidification alters fish-jellyfish symbiosis.

    PubMed

    Nagelkerken, Ivan; Pitt, Kylie A; Rutte, Melchior D; Geertsma, Robbert C

    2016-06-29

    Symbiotic relationships are common in nature, and are important for individual fitness and sustaining species populations. Global change is rapidly altering environmental conditions, but, with the exception of coral-microalgae interactions, we know little of how this will affect symbiotic relationships. We here test how the effects of ocean acidification, from rising anthropogenic CO2 emissions, may alter symbiotic interactions between juvenile fish and their jellyfish hosts. Fishes treated with elevated seawater CO2 concentrations, as forecast for the end of the century on a business-as-usual greenhouse gas emission scenario, were negatively affected in their behaviour. The total time that fish (yellowtail scad) spent close to their jellyfish host in a choice arena where they could see and smell their host was approximately three times shorter under future compared with ambient CO2 conditions. Likewise, the mean number of attempts to associate with jellyfish was almost three times lower in CO2-treated compared with control fish, while only 63% (high CO2) versus 86% (control) of all individuals tested initiated an association at all. By contrast, none of three fish species tested were attracted solely to jellyfish olfactory cues under present-day CO2 conditions, suggesting that the altered fish-jellyfish association is not driven by negative effects of ocean acidification on olfaction. Because shelter is not widely available in the open water column and larvae of many (and often commercially important) pelagic species associate with jellyfish for protection against predators, modification of the fish-jellyfish symbiosis might lead to higher mortality and alter species population dynamics, and potentially have flow-on effects for their fisheries. PMID:27358374

  1. Ocean acidification alters fish-jellyfish symbiosis.

    PubMed

    Nagelkerken, Ivan; Pitt, Kylie A; Rutte, Melchior D; Geertsma, Robbert C

    2016-06-29

    Symbiotic relationships are common in nature, and are important for individual fitness and sustaining species populations. Global change is rapidly altering environmental conditions, but, with the exception of coral-microalgae interactions, we know little of how this will affect symbiotic relationships. We here test how the effects of ocean acidification, from rising anthropogenic CO2 emissions, may alter symbiotic interactions between juvenile fish and their jellyfish hosts. Fishes treated with elevated seawater CO2 concentrations, as forecast for the end of the century on a business-as-usual greenhouse gas emission scenario, were negatively affected in their behaviour. The total time that fish (yellowtail scad) spent close to their jellyfish host in a choice arena where they could see and smell their host was approximately three times shorter under future compared with ambient CO2 conditions. Likewise, the mean number of attempts to associate with jellyfish was almost three times lower in CO2-treated compared with control fish, while only 63% (high CO2) versus 86% (control) of all individuals tested initiated an association at all. By contrast, none of three fish species tested were attracted solely to jellyfish olfactory cues under present-day CO2 conditions, suggesting that the altered fish-jellyfish association is not driven by negative effects of ocean acidification on olfaction. Because shelter is not widely available in the open water column and larvae of many (and often commercially important) pelagic species associate with jellyfish for protection against predators, modification of the fish-jellyfish symbiosis might lead to higher mortality and alter species population dynamics, and potentially have flow-on effects for their fisheries.

  2. The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.

    PubMed

    Miyata, Kana; Kozaki, Toshinori; Kouzai, Yusuke; Ozawa, Kenjirou; Ishii, Kazuo; Asamizu, Erika; Okabe, Yoshihiro; Umehara, Yosuke; Miyamoto, Ayano; Kobae, Yoshihiro; Akiyama, Kohki; Kaku, Hanae; Nishizawa, Yoko; Shibuya, Naoto; Nakagawa, Tomomi

    2014-11-01

    Plants are constantly exposed to threats from pathogenic microbes and thus developed an innate immune system to protect themselves. On the other hand, many plants also have the ability to establish endosymbiosis with beneficial microbes such as arbuscular mycorrhizal (AM) fungi or rhizobial bacteria, which improves the growth of host plants. How plants evolved these systems managing such opposite plant-microbe interactions is unclear. We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis. On the other hand, a KO mutant of OsCEBiP, which forms a receptor complex with OsCERK1 and is essential for chitin-triggered immunity, established mycorrhizal symbiosis normally. Therefore, OsCERK1 but not chitin-triggered immunity is required for AM symbiosis. Furthermore, experiments with chimeric receptors showed that the kinase domains of OsCERK1 and homologs from non-leguminous, mycorrhizal plants could trigger nodulation signaling in legume-rhizobium interactions as the kinase domain of Nod factor receptor1 (NFR1), which is essential for triggering the nodulation program in leguminous plants, did. Because leguminous plants are believed to have developed the rhizobial symbiosis on the basis of AM symbiosis, our results suggest that the symbiotic function of ancestral CERK1 in AM symbiosis enabled the molecular evolution to leguminous NFR1 and resulted in the establishment of legume-rhizobia symbiosis. These results also suggest that OsCERK1 and homologs serve as a molecular switch that activates defense or symbiotic responses depending on the infecting microbes. PMID:25231970

  3. The bifunctional plant receptor, OsCERK1, regulates both chitin-triggered immunity and arbuscular mycorrhizal symbiosis in rice.

    PubMed

    Miyata, Kana; Kozaki, Toshinori; Kouzai, Yusuke; Ozawa, Kenjirou; Ishii, Kazuo; Asamizu, Erika; Okabe, Yoshihiro; Umehara, Yosuke; Miyamoto, Ayano; Kobae, Yoshihiro; Akiyama, Kohki; Kaku, Hanae; Nishizawa, Yoko; Shibuya, Naoto; Nakagawa, Tomomi

    2014-11-01

    Plants are constantly exposed to threats from pathogenic microbes and thus developed an innate immune system to protect themselves. On the other hand, many plants also have the ability to establish endosymbiosis with beneficial microbes such as arbuscular mycorrhizal (AM) fungi or rhizobial bacteria, which improves the growth of host plants. How plants evolved these systems managing such opposite plant-microbe interactions is unclear. We show here that knockout (KO) mutants of OsCERK1, a rice receptor kinase essential for chitin signaling, were impaired not only for chitin-triggered defense responses but also for AM symbiosis, indicating the bifunctionality of OsCERK1 in defense and symbiosis. On the other hand, a KO mutant of OsCEBiP, which forms a receptor complex with OsCERK1 and is essential for chitin-triggered immunity, established mycorrhizal symbiosis normally. Therefore, OsCERK1 but not chitin-triggered immunity is required for AM symbiosis. Furthermore, experiments with chimeric receptors showed that the kinase domains of OsCERK1 and homologs from non-leguminous, mycorrhizal plants could trigger nodulation signaling in legume-rhizobium interactions as the kinase domain of Nod factor receptor1 (NFR1), which is essential for triggering the nodulation program in leguminous plants, did. Because leguminous plants are believed to have developed the rhizobial symbiosis on the basis of AM symbiosis, our results suggest that the symbiotic function of ancestral CERK1 in AM symbiosis enabled the molecular evolution to leguminous NFR1 and resulted in the establishment of legume-rhizobia symbiosis. These results also suggest that OsCERK1 and homologs serve as a molecular switch that activates defense or symbiotic responses depending on the infecting microbes.

  4. Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

    PubMed Central

    Bennett, Gordon M.; Moran, Nancy A.

    2015-01-01

    Many eukaryotes have obligate associations with microorganisms that are transmitted directly between generations. A model for heritable symbiosis is the association of aphids, a clade of sap-feeding insects, and Buchnera aphidicola, a gammaproteobacterium that colonized an aphid ancestor 150 million years ago and persists in almost all 5,000 aphid species. Symbiont acquisition enables evolutionary and ecological expansion; aphids are one of many insect groups that would not exist without heritable symbiosis. Receiving less attention are potential negative ramifications of symbiotic alliances. In the short run, symbionts impose metabolic costs. Over evolutionary time, hosts evolve dependence beyond the original benefits of the symbiosis. Symbiotic partners enter into an evolutionary spiral that leads to irreversible codependence and associated risks. Host adaptations to symbiosis (e.g., immune-system modification) may impose vulnerabilities. Symbiont genomes also continuously accumulate deleterious mutations, limiting their beneficial contributions and environmental tolerance. Finally, the fitness interests of obligate heritable symbionts are distinct from those of their hosts, leading to selfish tendencies. Thus, genes underlying the host–symbiont interface are predicted to follow a coevolutionary arms race, as observed for genes governing host–pathogen interactions. On the macroevolutionary scale, the rapid evolution of interacting symbiont and host genes is predicted to accelerate host speciation rates by generating genetic incompatibilities. However, degeneration of symbiont genomes may ultimately limit the ecological range of host species, potentially increasing extinction risk. Recent results for the aphid–Buchnera symbiosis and related systems illustrate that, whereas heritable symbiosis can expand ecological range and spur diversification, it also presents potential perils. PMID:25713367

  5. Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole.

    PubMed

    Bennett, Gordon M; Moran, Nancy A

    2015-08-18

    Many eukaryotes have obligate associations with microorganisms that are transmitted directly between generations. A model for heritable symbiosis is the association of aphids, a clade of sap-feeding insects, and Buchnera aphidicola, a gammaproteobacterium that colonized an aphid ancestor 150 million years ago and persists in almost all 5,000 aphid species. Symbiont acquisition enables evolutionary and ecological expansion; aphids are one of many insect groups that would not exist without heritable symbiosis. Receiving less attention are potential negative ramifications of symbiotic alliances. In the short run, symbionts impose metabolic costs. Over evolutionary time, hosts evolve dependence beyond the original benefits of the symbiosis. Symbiotic partners enter into an evolutionary spiral that leads to irreversible codependence and associated risks. Host adaptations to symbiosis (e.g., immune-system modification) may impose vulnerabilities. Symbiont genomes also continuously accumulate deleterious mutations, limiting their beneficial contributions and environmental tolerance. Finally, the fitness interests of obligate heritable symbionts are distinct from those of their hosts, leading to selfish tendencies. Thus, genes underlying the host-symbiont interface are predicted to follow a coevolutionary arms race, as observed for genes governing host-pathogen interactions. On the macroevolutionary scale, the rapid evolution of interacting symbiont and host genes is predicted to accelerate host speciation rates by generating genetic incompatibilities. However, degeneration of symbiont genomes may ultimately limit the ecological range of host species, potentially increasing extinction risk. Recent results for the aphid-Buchnera symbiosis and related systems illustrate that, whereas heritable symbiosis can expand ecological range and spur diversification, it also presents potential perils.

  6. Elevated temperature and drought interact to reduce parasitoid effectiveness in suppressing hosts.

    PubMed

    Romo, Cecilia M; Tylianakis, Jason M

    2013-01-01

    Climate change affects the abundance, distribution and activity of natural enemies that are important for suppressing herbivore crop pests. Moreover, higher mean temperatures and increased frequency of climatic extremes are expected to induce different responses across trophic levels, potentially disrupting predator-prey interactions. Using field observations, we examined the response of an aphid host-parasitoid system to variation in temperature. Temperature was positively associated with attack rates by parasitoids, but also with a non-significant trend towards increased attack rates by higher-level hyperparasitoids. Elevated hyperparasitism could partly offset any benefit of climate warming to parasitoids, and would suggest that higher trophic levels may hamper predictions of predator-prey interactions. Additionally, the mechanisms affecting host-parasitoid dynamics were examined using controlled laboratory experiments that simulated both temperature increase and drought. Parasitoid fitness and longevity responded differently when exposed to each climatic variable in isolation, compared to the interaction of both variables at once. Although temperature increase or drought tended to positively affect the ability of parasitoids to control aphid populations, these effects were significantly reversed when the drivers were expressed in concert. Additionally, separate warming and drought treatments reduced parasitoid longevity, and although temperature increased parasitoid emergence success and drought increased offspring production, combined temperature and drought produced the lowest parasitoid emergence. The non-additive effects of different climate drivers, combined with differing responses across trophic levels, suggest that predicting future pest outbreaks will be more challenging than previously imagined.

  7. Symbiosis-induced adaptation to oxidative stress.

    PubMed

    Richier, Sophie; Furla, Paola; Plantivaux, Amandine; Merle, Pierre-Laurent; Allemand, Denis

    2005-01-01

    Cnidarians in symbiosis with photosynthetic protists must withstand daily hyperoxic/anoxic transitions within their host cells. Comparative studies between symbiotic (Anemonia viridis) and non-symbiotic (Actinia schmidti) sea anemones show striking differences in their response to oxidative stress. First, the basal expression of SOD is very different. Symbiotic animal cells have a higher isoform diversity (number and classes) and a higher activity than the non-symbiotic cells. Second, the symbiotic animal cells of A. viridis also maintain unaltered basal values for cellular damage when exposed to experimental hyperoxia (100% O(2)) or to experimental thermal stress (elevated temperature +7 degrees C above ambient). Under such conditions, A. schmidti modifies its SOD activity significantly. Electrophoretic patterns diversify, global activities diminish and cell damage biomarkers increase. These data suggest symbiotic cells adapt to stress while non-symbiotic cells remain acutely sensitive. In addition to being toxic, high O(2) partial pressure (P(O(2))) may also constitute a preconditioning step for symbiotic animal cells, leading to an adaptation to the hyperoxic condition and, thus, to oxidative stress. Furthermore, in aposymbiotic animal cells of A. viridis, repression of some animal SOD isoforms is observed. Meanwhile, in cultured symbionts, new activity bands are induced, suggesting that the host might protect its zooxanthellae in hospite. Similar results have been observed in other symbiotic organisms, such as the sea anemone Aiptasia pulchella and the scleractinian coral Stylophora pistillata. Molecular or physical interactions between the two symbiotic partners may explain such variations in SOD activity and might confer oxidative stress tolerance to the animal host. PMID:15634847

  8. Symbiosis-induced adaptation to oxidative stress.

    PubMed

    Richier, Sophie; Furla, Paola; Plantivaux, Amandine; Merle, Pierre-Laurent; Allemand, Denis

    2005-01-01

    Cnidarians in symbiosis with photosynthetic protists must withstand daily hyperoxic/anoxic transitions within their host cells. Comparative studies between symbiotic (Anemonia viridis) and non-symbiotic (Actinia schmidti) sea anemones show striking differences in their response to oxidative stress. First, the basal expression of SOD is very different. Symbiotic animal cells have a higher isoform diversity (number and classes) and a higher activity than the non-symbiotic cells. Second, the symbiotic animal cells of A. viridis also maintain unaltered basal values for cellular damage when exposed to experimental hyperoxia (100% O(2)) or to experimental thermal stress (elevated temperature +7 degrees C above ambient). Under such conditions, A. schmidti modifies its SOD activity significantly. Electrophoretic patterns diversify, global activities diminish and cell damage biomarkers increase. These data suggest symbiotic cells adapt to stress while non-symbiotic cells remain acutely sensitive. In addition to being toxic, high O(2) partial pressure (P(O(2))) may also constitute a preconditioning step for symbiotic animal cells, leading to an adaptation to the hyperoxic condition and, thus, to oxidative stress. Furthermore, in aposymbiotic animal cells of A. viridis, repression of some animal SOD isoforms is observed. Meanwhile, in cultured symbionts, new activity bands are induced, suggesting that the host might protect its zooxanthellae in hospite. Similar results have been observed in other symbiotic organisms, such as the sea anemone Aiptasia pulchella and the scleractinian coral Stylophora pistillata. Molecular or physical interactions between the two symbiotic partners may explain such variations in SOD activity and might confer oxidative stress tolerance to the animal host.

  9. The symbiont side of symbiosis: do microbes really benefit?

    PubMed Central

    Garcia, Justine R.; Gerardo, Nicole M.

    2014-01-01

    Microbial associations are integral to all eukaryotes. Mutualism, the interaction of two species for the benefit of both, is an important aspect of microbial associations, with evidence that multicellular organisms in particular benefit from microbes. However, the microbe’s perspective has largely been ignored, and it is unknown whether most microbial symbionts benefit from their associations with hosts. It has been presumed that microbial symbionts receive host-derived nutrients or a competition-free environment with reduced predation, but there have been few empirical tests, or even critical assessments, of these assumptions. We evaluate these hypotheses based on available evidence, which indicate reduced competition and predation are not universal benefits for symbionts. Some symbionts do receive nutrients from their host, but this has not always been linked to a corresponding increase in symbiont fitness. We recommend experiments to test symbiont fitness using current experimental systems of symbiosis and detail considerations for other systems. Incorporating symbiont fitness into symbiosis research will provide insight into the evolution of mutualistic interactions and cooperation in general. PMID:25309530

  10. CERBERUS and NSP1 of Lotus japonicus are common symbiosis genes that modulate arbuscular mycorrhiza development.

    PubMed

    Takeda, Naoya; Tsuzuki, Syusaku; Suzaki, Takuya; Parniske, Martin; Kawaguchi, Masayoshi

    2013-10-01

    Arbuscular mycorrhizal symbiosis (AMS) and root nodule symbiosis (RNS) are mutualistic plant-microbe interactions that confer nutritional benefits to both partners. Leguminous plants possess a common genetic system for intracellular symbiosis with AM fungi and with rhizobia. Here we show that CERBERUS and NSP1, which respectively encode an E3 ubiquitin ligase and a GRAS transcriptional regulator and which have previously only been implicated in RNS, are involved in AM fungal infection in Lotus japonicus. Hyphal elongation along the longitudinal axis of the root was reduced in the cerberus mutant, giving rise to a lower colonization level. Knockout of NSP1 decreased the frequency of plants colonized by AM fungi or rhizobia. CERBERUS and NSP1 showed different patterns of expression in response to infection with symbiotic microbes. A low constitutive level of CERBERUS expression was observed in the root and an increased level of NSP1 expression was detected in arbuscule-containing cells. Induction of AM marker gene was triggered in both cerberus and nsp1 mutants by infection with symbiotic microbes; however, the mutants showed a weaker induction of marker gene expression than the wild type, mirroring their lower level of colonization. The common symbiosis genes are believed to act in an early signaling pathway for recognition of symbionts and for triggering early symbiotic responses. Our quantitative analysis of symbiotic phenotypes revealed developmental defects of the novel common symbiosis mutants in both symbioses, which demonstrates that common symbiosis mechanisms also contribute to a range of functions at later or different stages of symbiont infection.

  11. The origin of new qualities in the evolution of interacting dynamical systems

    NASA Astrophysics Data System (ADS)

    Kirvelis, Dobilas

    1999-03-01

    The principles of the emergence of new qualities are analyzed on the basis of the evolutionary analogies of biological systems and models of interacting systems. It is pointed out that competition does not create new qualities; it only elaborates on and disseminates a certain trait of the system. New qualities are generated by symbiotic interactions: mutualism, cooperation and predator-prey-like ones. Special attention is called to the evolution of the predator-prey-like system, as it evolves into an organized and even anticipatory system: when this system becomes a simple cybernetic regulator, when the predator specializes to process ˜1 bit of information; when the system can regulate many parameters and the predator becomes a complex processor of information that controls the activity of the Prey, that is the transformations of matter/energy, when additional memory structures that contain fixed sets of programs emerge (programmed control); and when, finally, a special structure that can model the internal and external world and store information develops, and the whole system becomes an anticipatory system.

  12. Plant hormones as signals in arbuscular mycorrhizal symbiosis.

    PubMed

    Miransari, Mohammad; Abrishamchi, A; Khoshbakht, K; Niknam, V

    2014-06-01

    Arbuscular mycorrhizal (AM) fungi are non-specific symbionts developing mutual and beneficial symbiosis with most terrestrial plants. Because of the obligatory nature of the symbiosis, the presence of the host plant during the onset and proceeding of symbiosis is necessary. However, AM fungal spores are able to germinate in the absence of the host plant. The fungi detect the presence of the host plant through some signal communications. Among the signal molecules, which can affect mycorrhizal symbiosis are plant hormones, which may positively or adversely affect the symbiosis. In this review article, some of the most recent findings regarding the signaling effects of plant hormones, on mycorrhizal fungal symbiosis are reviewed. This may be useful for the production of plants, which are more responsive to mycorrhizal symbiosis under stress.

  13. Unethical and Deadly Symbiosis in Higher Education

    ERIC Educational Resources Information Center

    Crumbley, D. Larry; Flinn, Ronald; Reichelt, Kenneth J.

    2012-01-01

    As administrators are pressured to increase retention rates in accounting departments, and higher education in general, a deadly symbiosis is occurring. Most students and parents only wish for high grades, so year after year many educators engage in unethical grade inflation and course work deflation. Since administrators use the students to audit…

  14. Making the Most of Omics for Symbiosis Research

    PubMed Central

    Chaston, J.; Douglas, A.E.

    2012-01-01

    Omics, including genomics, proteomics and metabolomics, enable us to explain symbioses in terms of the underlying molecules and their interactions. The central task is to transform molecular catalogs of genes, metabolites etc. into a dynamic understanding of symbiosis function. We review four exemplars of omics studies that achieve this goal, through defined biological questions relating to metabolic integration and regulation of animal-microbial symbioses, the genetic autonomy of bacterial symbionts, and symbiotic protection of animal hosts from pathogens. As omic datasets become increasingly complex, computationally-sophisticated downstream analyses are essential to reveal interactions not evident to visual inspection of the data. We discuss two approaches, phylogenomics and transcriptional clustering, that can divide the primary output of omics studies – long lists of factors – into manageable subsets, and we describe how they have been applied to analyze large datasets and generate testable hypotheses. PMID:22983030

  15. Getting What Is Served? Feeding Ecology Influencing Parasite-Host Interactions in Invasive Round Goby Neogobius melanostomus

    PubMed Central

    Emde, Sebastian; Kochmann, Judith; Kuhn, Thomas; Plath, Martin; Klimpel, Sven

    2014-01-01

    Freshwater ecosystems are increasingly impacted by alien invasive species which have the potential to alter various ecological interactions like predator-prey and host-parasite relationships. Here, we simultaneously examined predator-prey interactions and parasitization patterns of the highly invasive round goby (Neogobius melanostomus) in the rivers Rhine and Main in Germany. A total of 350 N. melanostomus were sampled between June and October 2011. Gut content analysis revealed a broad prey spectrum, partly reflecting temporal and local differences in prey availability. For the major food type (amphipods), species compositions were determined. Amphipod fauna consisted entirely of non-native species and was dominated by Dikerogammarus villosus in the Main and Echinogammarus trichiatus in the Rhine. However, the availability of amphipod species in the field did not reflect their relative abundance in gut contents of N. melanostomus. Only two metazoan parasites, the nematode Raphidascaris acus and the acanthocephalan Pomphorhynchus sp., were isolated from N. melanostomus in all months, whereas unionid glochidia were only detected in June and October in fish from the Main. To analyse infection pathways, we examined 17,356 amphipods and found Pomphorhynchus sp. larvae only in D. villosus in the river Rhine at a prevalence of 0.15%. Dikerogammarus villosus represented the most important amphipod prey for N. melanostomus in both rivers but parasite intensities differed between rivers, suggesting that final hosts (large predatory fishes) may influence host-parasite dynamics of N. melanostomus in its introduced range. PMID:25338158

  16. Bdellovibrio predation in the presence of decoys: Three-way bacterial interactions revealed by mathematical and experimental analyses.

    PubMed

    Hobley, Laura; King, John R; Sockett, R Elizabeth

    2006-10-01

    Bdellovibrio bacteriovorus is a small, gram-negative, motile bacterium that preys upon other gram-negative bacteria, including several known human pathogens. Its predation efficiency is usually studied in pure cultures containing solely B. bacteriovorus and a suitable prey. However, in natural environments, as well as in any possible biomedical uses as an antimicrobial, Bdellovibrio is predatory in the presence of diverse decoys, including live nonsusceptible bacteria, eukaryotic cells, and cell debris. Here we gathered and mathematically modeled data from three-member cultures containing predator, prey, and nonsusceptible bacterial decoys. Specifically, we studied the rate of predation of planktonic late-log-phase Escherichia coli S17-1 prey by B. bacteriovorus HD100, both in the presence and in the absence of Bacillus subtilis nonsporulating strain 671, which acted as a live bacterial decoy. Interestingly, we found that although addition of the live Bacillus decoy did decrease the rate of Bdellovibrio predation in liquid cultures, this addition also resulted in a partially compensatory enhancement of the availability of prey for predation. This effect resulted in a higher final yield of Bdellovibrio than would be predicted for a simple inert decoy. Our mathematical model accounts for both negative and positive effects of predator-prey-decoy interactions in the closed batch environment. In addition, it informs considerations for predator dosing in any future therapeutic applications and sheds some light on considerations for modeling the massively complex interactions of real mixed bacterial populations in nature.

  17. Arbuscular mycorrhizal symbiosis induces strigolactone biosynthesis under drought and improves drought tolerance in lettuce and tomato.

    PubMed

    Ruiz-Lozano, Juan Manuel; Aroca, Ricardo; Zamarreño, Ángel María; Molina, Sonia; Andreo-Jiménez, Beatriz; Porcel, Rosa; García-Mina, José María; Ruyter-Spira, Carolien; López-Ráez, Juan Antonio

    2016-02-01

    Arbuscular mycorrhizal (AM) symbiosis alleviates drought stress in plants. However, the intimate mechanisms involved, as well as its effect on the production of signalling molecules associated with the host plant-AM fungus interaction remains largely unknown. In the present work, the effects of drought on lettuce and tomato plant performance and hormone levels were investigated in non-AM and AM plants. Three different water regimes were applied, and their effects were analysed over time. AM plants showed an improved growth rate and efficiency of photosystem II than non-AM plants under drought from very early stages of plant colonization. The levels of the phytohormone abscisic acid, as well as the expression of the corresponding marker genes, were influenced by drought stress in non-AM and AM plants. The levels of strigolactones and the expression of corresponding marker genes were affected by both AM symbiosis and drought. The results suggest that AM symbiosis alleviates drought stress by altering the hormonal profiles and affecting plant physiology in the host plant. In addition, a correlation between AM root colonization, strigolactone levels and drought severity is shown, suggesting that under these unfavourable conditions, plants might increase strigolactone production in order to promote symbiosis establishment to cope with the stress. PMID:26305264

  18. Arbuscular mycorrhizal symbiosis induces strigolactone biosynthesis under drought and improves drought tolerance in lettuce and tomato.

    PubMed

    Ruiz-Lozano, Juan Manuel; Aroca, Ricardo; Zamarreño, Ángel María; Molina, Sonia; Andreo-Jiménez, Beatriz; Porcel, Rosa; García-Mina, José María; Ruyter-Spira, Carolien; López-Ráez, Juan Antonio

    2016-02-01

    Arbuscular mycorrhizal (AM) symbiosis alleviates drought stress in plants. However, the intimate mechanisms involved, as well as its effect on the production of signalling molecules associated with the host plant-AM fungus interaction remains largely unknown. In the present work, the effects of drought on lettuce and tomato plant performance and hormone levels were investigated in non-AM and AM plants. Three different water regimes were applied, and their effects were analysed over time. AM plants showed an improved growth rate and efficiency of photosystem II than non-AM plants under drought from very early stages of plant colonization. The levels of the phytohormone abscisic acid, as well as the expression of the corresponding marker genes, were influenced by drought stress in non-AM and AM plants. The levels of strigolactones and the expression of corresponding marker genes were affected by both AM symbiosis and drought. The results suggest that AM symbiosis alleviates drought stress by altering the hormonal profiles and affecting plant physiology in the host plant. In addition, a correlation between AM root colonization, strigolactone levels and drought severity is shown, suggesting that under these unfavourable conditions, plants might increase strigolactone production in order to promote symbiosis establishment to cope with the stress.

  19. Speciation by Symbiosis: the Microbiome and Behavior

    PubMed Central

    Shropshire, J. Dylan

    2016-01-01

    ABSTRACT Species are fundamental units of comparison in biology. The newly discovered importance and ubiquity of host-associated microorganisms are now stimulating work on the roles that microbes can play in animal speciation. We previously synthesized the literature and advanced concepts of speciation by symbiosis with notable attention to hybrid sterility and lethality. Here, we review recent studies and relevant data on microbes as players in host behavior and behavioral isolation, emphasizing the patterns seen in these analyses and highlighting areas worthy of additional exploration. We conclude that the role of microbial symbionts in behavior and speciation is gaining exciting traction and that the holobiont and hologenome concepts afford an evolving intellectual framework to promote research and intellectual exchange between disciplines such as behavior, microbiology, genetics, symbiosis, and speciation. Given the increasing centrality of microbiology in macroscopic life, microbial symbiosis is arguably the most neglected aspect of animal and plant speciation, and studying it should yield a better understanding of the origin of species. PMID:27034284

  20. Rich-and-Poor Model for Human and Nature Interaction

    NASA Astrophysics Data System (ADS)

    Motesharrei, S.; Kalnay, E.; Rivas, J.; Rich-n-Poor

    2011-12-01

    Historical evidence shows collapse of several civilizations in different regions of the world. Jared Diamond presents an account of such societal failures in his 2005 book "Collapse: How Societies Choose to Fail or Succeed." As a precursor to building a complex model for interaction of human and environment, we developed a "thought-experiment" model based on Lotka-Volterra equations for the interaction of two species, known as the Predator-Prey model. We constructed a fairly simple rich-and-poor model that includes only four state variables (or stocks): Rich Population, Poor Population, Nature, and Rich Savings. We observed several scenarios for growth of societies by varying the model's parameter values, including scenarios that resemble the catastrophic fall of ancient civilizations such as the Maya and Anasazi.

  1. Long-distance transport of signals during symbiosis

    PubMed Central

    Xie, Zhi-Ping; Illana, Antonio

    2011-01-01

    Legumes enter nodule symbioses with nitrogen-fixing bacteria (rhizobia), whereas most flowering plants establish symbiotic associations with arbuscular mycorrhizal (AM) fungi. Once first steps of symbiosis are initiated, nodule formation and mycorrhization in legumes is negatively controlled by a shoot-derived inhibitor (SDI), a phenomenon termed autoregulation. According to current views, autoregulation of nodulation and mycorrhization in legumes is regulated in a similar way. CLE peptides induced in response to rhizobial nodulation signals (Nod factors) have been proposed to represent the ascending long-distance signals to the shoot. Although not proven yet, these CLE peptides are likely perceived by leucine-rich repeat (LRR) autoregulation receptor kinases in the shoot. Autoregulation of mycorrhization in non-legumes is reminiscent to the phenomenon of “systemic acquired resistance” in plant-pathogen interactions. PMID:21455020

  2. Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts.

    PubMed

    Remigi, Philippe; Zhu, Jun; Young, J Peter W; Masson-Boivin, Catherine

    2016-01-01

    Bacterial accessory genes are genomic symbionts with an evolutionary history and future that is different from that of their hosts. Packages of accessory genes move from strain to strain and confer important adaptations, such as interaction with eukaryotes. The ability to fix nitrogen with legumes is a remarkable example of a complex trait spread by horizontal transfer of a few key symbiotic genes, converting soil bacteria into legume symbionts. Rhizobia belong to hundreds of species restricted to a dozen genera of the Alphaproteobacteria and Betaproteobacteria, suggesting infrequent successful transfer between genera but frequent successful transfer within genera. Here we review the genetic and environmental conditions and selective forces that have shaped evolution of this complex symbiotic trait.

  3. Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR

    PubMed Central

    Lee, Soon Goo; Krishnan, Hari B.; Jez, Joseph M.

    2014-01-01

    The symbiosis between rhizobial microbes and host plants involves the coordinated expression of multiple genes, which leads to nodule formation and nitrogen fixation. As part of the transcriptional machinery for nodulation and symbiosis across a range of Rhizobium, NolR serves as a global regulatory protein. Here, we present the X-ray crystal structures of NolR in the unliganded form and complexed with two different 22-base pair (bp) double-stranded operator sequences (oligos AT and AA). Structural and biochemical analysis of NolR reveals protein–DNA interactions with an asymmetric operator site and defines a mechanism for conformational switching of a key residue (Gln56) to accommodate variation in target DNA sequences from diverse rhizobial genes for nodulation and symbiosis. This conformational switching alters the energetic contributions to DNA binding without changes in affinity for the target sequence. Two possible models for the role of NolR in the regulation of different nodulation and symbiosis genes are proposed. To our knowledge, these studies provide the first structural insight on the regulation of genes involved in the agriculturally and ecologically important symbiosis of microbes and plants that leads to nodule formation and nitrogen fixation. PMID:24733893

  4. Structural basis for regulation of rhizobial nodulation and symbiosis gene expression by the regulatory protein NolR.

    PubMed

    Lee, Soon Goo; Krishnan, Hari B; Jez, Joseph M

    2014-04-29

    The symbiosis between rhizobial microbes and host plants involves the coordinated expression of multiple genes, which leads to nodule formation and nitrogen fixation. As part of the transcriptional machinery for nodulation and symbiosis across a range of Rhizobium, NolR serves as a global regulatory protein. Here, we present the X-ray crystal structures of NolR in the unliganded form and complexed with two different 22-base pair (bp) double-stranded operator sequences (oligos AT and AA). Structural and biochemical analysis of NolR reveals protein-DNA interactions with an asymmetric operator site and defines a mechanism for conformational switching of a key residue (Gln56) to accommodate variation in target DNA sequences from diverse rhizobial genes for nodulation and symbiosis. This conformational switching alters the energetic contributions to DNA binding without changes in affinity for the target sequence. Two possible models for the role of NolR in the regulation of different nodulation and symbiosis genes are proposed. To our knowledge, these studies provide the first structural insight on the regulation of genes involved in the agriculturally and ecologically important symbiosis of microbes and plants that leads to nodule formation and nitrogen fixation.

  5. [Signal exchange between plants and Arbuscular Mycorrhizae fungi during the early stage of symbiosis - A review].

    PubMed

    Duan, Qianqian; Yang, Xiaohong; Huang, Xianzhi

    2015-07-01

    Much is known about Arbuscular Mycorrhizae (AM), an important component of the ecosystem, whereas little is known about the signal exchange that allows mutual recognition and reprograming for the anticipated physical interaction. This review addresses the latest advances of signal exchange between plants and AM, including signal substances and their function, related genes and regulation function in the early stage of plant-fungal symbiosis.

  6. Disentangling the interaction among host resources, the immune system and pathogens.

    PubMed

    Cressler, Clayton E; Nelson, William A; Day, Troy; McCauley, Edward

    2014-03-01

    The interaction between the immune system and pathogens is often characterised as a predator-prey interaction. This characterisation ignores the fact that both require host resources to reproduce. Here, we propose novel theory that considers how these resource requirements can modify the interaction between the immune system and pathogens. We derive a series of models to describe the energetic interaction between the immune system and pathogens, from fully independent resources to direct competition for the same resource. We show that increasing within-host resource supply has qualitatively distinct effects under these different scenarios. In particular, we show the conditions for which pathogen load is expected to increase, decrease or even peak at intermediate resource supply. We survey the empirical literature and find evidence for all three patterns. These patterns are not explained by previous theory, suggesting that competition for host resources can have a strong influence on the outcome of disease.

  7. A spatial theory for characterizing predator-multiprey interactions in heterogeneous landscapes.

    PubMed

    Fortin, Daniel; Buono, Pietro-Luciano; Schmitz, Oswald J; Courbin, Nicolas; Losier, Chrystel; St-Laurent, Martin-Hugues; Drapeau, Pierre; Heppell, Sandra; Dussault, Claude; Brodeur, Vincent; Mainguy, Julien

    2015-08-01

    Trophic interactions in multiprey systems can be largely determined by prey distributions. Yet, classic predator-prey models assume spatially homogeneous interactions between predators and prey. We developed a spatially informed theory that predicts how habitat heterogeneity alters the landscape-scale distribution of mortality risk of prey from predation, and hence the nature of predator interactions in multiprey systems. The theoretical model is a spatially explicit, multiprey functional response in which species-specific advection-diffusion models account for the response of individual prey to habitat edges. The model demonstrates that distinct responses of alternative prey species can alter the consequences of conspecific aggregation, from increasing safety to increasing predation risk. Observations of threatened boreal caribou, moose and grey wolf interacting over 378 181 km(2) of human-managed boreal forest support this principle. This empirically supported theory demonstrates how distinct responses of apparent competitors to landscape heterogeneity, including to human disturbances, can reverse density dependence in fitness correlates.

  8. Interactive effects of warming, eutrophication and size structure: impacts on biodiversity and food-web structure.

    PubMed

    Binzer, Amrei; Guill, Christian; Rall, Björn C; Brose, Ulrich

    2016-01-01

    Warming and eutrophication are two of the most important global change stressors for natural ecosystems, but their interaction is poorly understood. We used a dynamic model of complex, size-structured food webs to assess interactive effects on diversity and network structure. We found antagonistic impacts: Warming increases diversity in eutrophic systems and decreases it in oligotrophic systems. These effects interact with the community size structure: Communities of similarly sized species such as parasitoid-host systems are stabilized by warming and destabilized by eutrophication, whereas the diversity of size-structured predator-prey networks decreases strongly with warming, but decreases only weakly with eutrophication. Nonrandom extinction risks for generalists and specialists lead to higher connectance in networks without size structure and lower connectance in size-structured communities. Overall, our results unravel interactive impacts of warming and eutrophication and suggest that size structure may serve as an important proxy for predicting the community sensitivity to these global change stressors.

  9. Distinguishing time-delayed causal interactions using convergent cross mapping.

    PubMed

    Ye, Hao; Deyle, Ethan R; Gilarranz, Luis J; Sugihara, George

    2015-01-01

    An important problem across many scientific fields is the identification of causal effects from observational data alone. Recent methods (convergent cross mapping, CCM) have made substantial progress on this problem by applying the idea of nonlinear attractor reconstruction to time series data. Here, we expand upon the technique of CCM by explicitly considering time lags. Applying this extended method to representative examples (model simulations, a laboratory predator-prey experiment, temperature and greenhouse gas reconstructions from the Vostok ice core, and long-term ecological time series collected in the Southern California Bight), we demonstrate the ability to identify different time-delayed interactions, distinguish between synchrony induced by strong unidirectional-forcing and true bidirectional causality, and resolve transitive causal chains. PMID:26435402

  10. Distinguishing time-delayed causal interactions using convergent cross mapping

    NASA Astrophysics Data System (ADS)

    Ye, Hao; Deyle, Ethan R.; Gilarranz, Luis J.; Sugihara, George

    2015-10-01

    An important problem across many scientific fields is the identification of causal effects from observational data alone. Recent methods (convergent cross mapping, CCM) have made substantial progress on this problem by applying the idea of nonlinear attractor reconstruction to time series data. Here, we expand upon the technique of CCM by explicitly considering time lags. Applying this extended method to representative examples (model simulations, a laboratory predator-prey experiment, temperature and greenhouse gas reconstructions from the Vostok ice core, and long-term ecological time series collected in the Southern California Bight), we demonstrate the ability to identify different time-delayed interactions, distinguish between synchrony induced by strong unidirectional-forcing and true bidirectional causality, and resolve transitive causal chains.

  11. Shifting species interactions in terrestrial dryland ecosystems under altered water availability and climate change

    USGS Publications Warehouse

    McCluney, Kevin E.; Belnap, Jayne; Collins, Scott L.; González, Angélica L.; Hagen, Elizabeth M.; Holland, J. Nathaniel; Kotler, Burt P.; Maestre, Fernando T.; Smith, Stanley D.; Wolf, Blair O.

    2012-01-01

    Species interactions play key roles in linking the responses of populations, communities, and ecosystems to environmental change. For instance, species interactions are an important determinant of the complexity of changes in trophic biomass with variation in resources. Water resources are a major driver of terrestrial ecology and climate change is expected to greatly alter the distribution of this critical resource. While previous studies have documented strong effects of global environmental change on species interactions in general, responses can vary from region to region. Dryland ecosystems occupy more than one-third of the Earth's land mass, are greatly affected by changes in water availability, and are predicted to be hotspots of climate change. Thus, it is imperative to understand the effects of environmental change on these globally significant ecosystems. Here, we review studies of the responses of population-level plant-plant, plant-herbivore, and predator-prey interactions to changes in water availability in dryland environments in order to develop new hypotheses and predictions to guide future research. To help explain patterns of interaction outcomes, we developed a conceptual model that views interaction outcomes as shifting between (1) competition and facilitation (plant-plant), (2) herbivory, neutralism, or mutualism (plant-herbivore), or (3) neutralism and predation (predator-prey), as water availability crosses physiological, behavioural, or population-density thresholds. We link our conceptual model to hypothetical scenarios of current and future water availability to make testable predictions about the influence of changes in water availability on species interactions. We also examine potential implications of our conceptual model for the relative importance of top-down effects and the linearity of patterns of change in trophic biomass with changes in water availability. Finally, we highlight key research needs and some possible broader impacts

  12. Shifting species interactions in terrestrial dryland ecosystems under altered water availability and climate change.

    PubMed

    McCluney, Kevin E; Belnap, Jayne; Collins, Scott L; González, Angélica L; Hagen, Elizabeth M; Nathaniel Holland, J; Kotler, Burt P; Maestre, Fernando T; Smith, Stanley D; Wolf, Blair O

    2012-08-01

    Species interactions play key roles in linking the responses of populations, communities, and ecosystems to environmental change. For instance, species interactions are an important determinant of the complexity of changes in trophic biomass with variation in resources. Water resources are a major driver of terrestrial ecology and climate change is expected to greatly alter the distribution of this critical resource. While previous studies have documented strong effects of global environmental change on species interactions in general, responses can vary from region to region. Dryland ecosystems occupy more than one-third of the Earth's land mass, are greatly affected by changes in water availability, and are predicted to be hotspots of climate change. Thus, it is imperative to understand the effects of environmental change on these globally significant ecosystems. Here, we review studies of the responses of population-level plant-plant, plant-herbivore, and predator-prey interactions to changes in water availability in dryland environments in order to develop new hypotheses and predictions to guide future research. To help explain patterns of interaction outcomes, we developed a conceptual model that views interaction outcomes as shifting between (1) competition and facilitation (plant-plant), (2) herbivory, neutralism, or mutualism (plant-herbivore), or (3) neutralism and predation (predator-prey), as water availability crosses physiological, behavioural, or population-density thresholds. We link our conceptual model to hypothetical scenarios of current and future water availability to make testable predictions about the influence of changes in water availability on species interactions. We also examine potential implications of our conceptual model for the relative importance of top-down effects and the linearity of patterns of change in trophic biomass with changes in water availability. Finally, we highlight key research needs and some possible broader impacts

  13. Biogeography of a defensive symbiosis

    PubMed Central

    Kaltenpoth, Martin; Roeser-Mueller, Kerstin; Stubblefield, J. William; Seger, Jon; Strohm, Erhard

    2014-01-01

    Mutualistic microorganisms play important roles in nutrition, reproduction and defense of many insects, yet the factors contributing to their maintenance and dispersal remain unknown in most cases. Theory suggests that collaboration can be maintained by repeated interaction of the same partners (partner fidelity) or by selective discrimination against non-cooperative partners (partner choice). In the defensive mutualism between solitary beewolf wasps and their antibiotic-producing Streptomyces bacteria, partner choice by host control of vertical symbiont transmission reinforces partner fidelity and has helped to maintain this highly specific association since it originated in the late Cretaceous. However, co-phylogenetic and biogeographic analyses suggest that there has also been considerable horizontal transmission of the symbionts. While the beewolves clearly have a paleotropic or palearctic origin, with later colonization of the nearctic and neotropics via Beringia and the Aves ridge, respectively, the bacteria show only weak geographical clustering, implying global dispersal or vicariance within the confines of an otherwise apparently exclusive symbiotic relationship. We discuss several hypotheses that may explain these patterns. Future studies investigating the occurrence of beewolf symbionts in the environment could yield broadly applicable insights into the relative impact of animal-vectored and free-living dispersal on the distribution of microorganisms in nature. PMID:26479018

  14. Interaction strengths in balanced carbon cycles and the absence of a relation between ecosystem complexity and stability

    PubMed Central

    Neutel, Anje-Margriet; Thorne, Michael AS

    2014-01-01

    The strength of interactions is crucial to the stability of ecological networks. However, the patterns of interaction strengths in mathematical models of ecosystems have not yet been based upon independent observations of balanced material fluxes. Here we analyse two Antarctic ecosystems for which the interaction strengths are obtained: (1) directly, from independently measured material fluxes, (2) for the complete ecosystem and (3) with a close match between species and ‘trophic groups’. We analyse the role of recycling, predation and competition and find that ecosystem stability can be estimated by the strengths of the shortest positive and negative predator-prey feedbacks in the network. We show the generality of our explanation with another 21 observed food webs, comparing random-type parameterisations of interaction strengths with empirical ones. Our results show how functional relationships dominate over average-network topology. They make clear that the classic complexity-instability paradox is essentially an artificial interaction-strength result. PMID:24636521

  15. Spatio-temporal dynamics of a three interacting species mathematical model inspired in physics

    NASA Astrophysics Data System (ADS)

    Sánchez-Garduño, Faustino; Breña-Medina, Víctor F.

    2008-02-01

    In this paper we study both, analytically and numerically, the spatio-temporal dynamics of a three interacting species mathematical model. The populations take the form of pollinators, a plant and herbivores; the model consists of three nonlinear reaction-diffusion-advection equations. In view of considering the full model, as a previous step we firstly analyze a mutualistic interaction (pollinator-plant), later on a predator-prey (plant-herbivore) interaction model is studied and finally, we consider the full model. In all cases, the purely temporal dynamics is given; meanwhile for the spatio-temporal dynamics, we use numerical simulations, corresponding to those parameter values for which we obtain interesting temporal dynamics.

  16. [The defense and regulatory mechanisms during development of legume-Rhizobium symbiosis].

    PubMed

    Glian'ko, A K; Akimova, G P; Sokolova, M G; Makarova, L E; Vasil'eva, G G

    2007-01-01

    The roles of indolylacetic acid, the peroxidase system, catalase, active oxygen species, and phenolic compounds in the physiological and biochemical mechanisms involved in the autoregulation of nodulation in the developing legume-Rhizobium symbiosis were studied. It was inferred that the concentration of indolylacetic acid in the roots of inoculated plants, controlled by the enzymes of the peroxidase complex, is the signal permitting or limiting nodulation at the initial stages of symbiotic interaction. Presumably, the change in the level of active oxygen species is determined by an antioxidant activity of phenolic compounds. During the development of symbiosis, phytohormones, antioxidant enzymes, and active oxygen species may be involved in the regulation of infection via both a direct antibacterial action and regulation of functional activity of the host plant defense systems. PMID:17619575

  17. Transcriptomic Analysis of Sinorhizobium meliloti and Medicago truncatula Symbiosis Using Nitrogen Fixation-Deficient Nodules.

    PubMed

    Lang, Claus; Long, Sharon R

    2015-08-01

    The bacterium Sinorhizobium meliloti interacts symbiotically with legume plant hosts such as Medicago truncatula to form nitrogen-fixing root nodules. During symbiosis, plant and bacterial cells differentiate in a coordinated manner, resulting in specialized plant cells that contain nitrogen-fixing bacteroids. Both plant and bacterial genes are required at each developmental stage of symbiosis. We analyzed gene expression in nodules formed by wild-type bacteria on six plant mutants with defects in nitrogen fixation. We observed differential expression of 482 S. meliloti genes with functions in cell envelope homeostasis, cell division, stress response, energy metabolism, and nitrogen fixation. We simultaneously analyzed gene expression in M. truncatula and observed differential regulation of host processes that may trigger bacteroid differentiation and control bacterial infection. Our analyses of developmentally arrested plant mutants indicate that plants use distinct means to control bacterial infection during early and late symbiotic stages.

  18. Network analysis of eight industrial symbiosis systems

    NASA Astrophysics Data System (ADS)

    Zhang, Yan; Zheng, Hongmei; Shi, Han; Yu, Xiangyi; Liu, Gengyuan; Su, Meirong; Li, Yating; Chai, Yingying

    2016-06-01

    Industrial symbiosis is the quintessential characteristic of an eco-industrial park. To divide parks into different types, previous studies mostly focused on qualitative judgments, and failed to use metrics to conduct quantitative research on the internal structural or functional characteristics of a park. To analyze a park's structural attributes, a range of metrics from network analysis have been applied, but few researchers have compared two or more symbioses using multiple metrics. In this study, we used two metrics (density and network degree centralization) to compare the degrees of completeness and dependence of eight diverse but representative industrial symbiosis networks. Through the combination of the two metrics, we divided the networks into three types: weak completeness, and two forms of strong completeness, namely "anchor tenant" mutualism and "equality-oriented" mutualism. The results showed that the networks with a weak degree of completeness were sparse and had few connections among nodes; for "anchor tenant" mutualism, the degree of completeness was relatively high, but the affiliated members were too dependent on core members; and the members in "equality-oriented" mutualism had equal roles, with diverse and flexible symbiotic paths. These results revealed some of the systems' internal structure and how different structures influenced the exchanges of materials, energy, and knowledge among members of a system, thereby providing insights into threats that may destabilize the network. Based on this analysis, we provide examples of the advantages and effectiveness of recent improvement projects in a typical Chinese eco-industrial park (Shandong Lubei).

  19. Osmoregulation in anthozoan-dinoflagellate symbiosis.

    PubMed

    Mayfield, Anderson B; Gates, Ruth D

    2007-05-01

    Endosymbiosis creates a unique osmotic circumstance. Hosts are not only responsible for balancing their internal osmolarity with respect to the external environment, but they must also maintain a compatible osmotic environment for their endosymbionts, which may themselves contribute to the net osmolarity of the host cell through molecular fluxes and/or exchange. Cnidarian hosts that harbor intracellular dinoflagellates (zooxanthellae) are excellent examples of such a symbiosis. These associations are characterized by the exchange of osmotically active compounds, but they are temporally stable under normal environmental conditions indicating that these osmotically driven exchanges are effectively and rapidly regulated. Although we have some knowledge about how asymbiotic anthozoans and algae osmoregulate, our understanding of the physiological mechanisms involved in regulating an intact anthozoan-dinoflagellate symbiosis is poor. Large-scale expulsion of endosymbiotic zooxanthellae, or bleaching, is currently considered to be one of the greatest threats to coral reefs worldwide. To date, there has been little consideration of the osmotic scenarios that occur when these symbioses are exposed to the conditions that normally elicit bleaching, such as increased seawater temperatures and UV radiation. Here we review what is known about osmoregulation and osmotic stress in anthozoans and dinoflagellates and discuss the osmotic implications of exposure to environmental stress in these globally distributed and ecologically important symbioses.

  20. The Microbiota, Chemical Symbiosis, and Human Disease

    PubMed Central

    Redinbo, Matthew R.

    2014-01-01

    Our understanding of mammalian-microbial mutualism has expanded by combing microbial sequencing with evolving molecular and cellular methods, and unique model systems. Here, the recent literature linking the microbiota to diseases of three of the key mammalian mucosal epithelial compartments – nasal, lung and gastrointestinal (GI) tract – is reviewed with a focus on new knowledge about the taxa, species, proteins and chemistry that promote health and impact progression toward disease. The information presented is further organized by specific diseases now associated with the microbiota:, Staphylococcus aureus infection and rhinosinusitis in the nasal-sinus mucosa; cystic fibrosis (CF), chronic obstructive pulmonary disorder (COPD), and asthma in the pulmonary tissues. For the vast and microbially dynamic GI compartment, several disorders are considered, including obesity, atherosclerosis, Crohn’s disease, ulcerative colitis, drug toxicity, and even autism. Our appreciation of the chemical symbiosis ongoing between human systems and the microbiota continues to grow, and suggest new opportunities for modulating this symbiosis using designed interventions. PMID:25305474

  1. Oak Root Response to Ectomycorrhizal Symbiosis Establishment: RNA-Seq Derived Transcript Identification and Expression Profiling

    PubMed Central

    Lino-Neto, Teresa; Monteiro, Filipa; Figueiredo, Andreia; Sousa, Lisete; Pais, Maria Salomé; Tavares, Rui; Paulo, Octávio S.

    2014-01-01

    Ectomycorrhizal symbiosis is essential for the life and health of trees in temperate and boreal forests where it plays a major role in nutrient cycling and in functioning of the forest ecosystem. Trees with ectomycorrhizal root tips are more tolerant to environmental stresses, such as drought, and biotic stresses such as root pathogens. Detailed information on these molecular processes is essential for the understanding of symbiotic tissue development in order to optimize the benefits of this natural phenomenon. Next generation sequencing tools allow the analysis of non model ectomycorrhizal plant-fungal interactions that can contribute to find the “symbiosis toolkits” and better define the role of each partner in the mutualistic interaction. By using 454 pyrosequencing we compared ectomycorrhizal cork oak roots with non-symbiotic roots. From the two cDNA libraries sequenced, over 2 million reads were obtained that generated 19552 cork oak root unique transcripts. A total of 2238 transcripts were found to be differentially expressed when ECM roots were compared with non-symbiotic roots. Identification of up- and down-regulated gens in ectomycorrhizal roots lead to a number of insights into the molecular mechanisms governing this important symbiosis. In cork oak roots, ectomycorrhizal colonization resulted in extensive cell wall remodelling, activation of the secretory pathway, alterations in flavonoid biosynthesis, and expression of genes involved in the recognition of fungal effectors. In addition, we identified genes with putative roles in symbiotic processes such as nutrient exchange with the fungal partner, lateral root formation or root hair decay. These findings provide a global overview of the transcriptome of an ectomycorrhizal host root, and constitute a foundation for future studies on the molecular events controlling this important symbiosis. PMID:24859293

  2. Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling.

    PubMed

    Sebastiana, Mónica; Vieira, Bruno; Lino-Neto, Teresa; Monteiro, Filipa; Figueiredo, Andreia; Sousa, Lisete; Pais, Maria Salomé; Tavares, Rui; Paulo, Octávio S

    2014-01-01

    Ectomycorrhizal symbiosis is essential for the life and health of trees in temperate and boreal forests where it plays a major role in nutrient cycling and in functioning of the forest ecosystem. Trees with ectomycorrhizal root tips are more tolerant to environmental stresses, such as drought, and biotic stresses such as root pathogens. Detailed information on these molecular processes is essential for the understanding of symbiotic tissue development in order to optimize the benefits of this natural phenomenon. Next generation sequencing tools allow the analysis of non model ectomycorrhizal plant-fungal interactions that can contribute to find the "symbiosis toolkits" and better define the role of each partner in the mutualistic interaction. By using 454 pyrosequencing we compared ectomycorrhizal cork oak roots with non-symbiotic roots. From the two cDNA libraries sequenced, over 2 million reads were obtained that generated 19,552 cork oak root unique transcripts. A total of 2238 transcripts were found to be differentially expressed when ECM roots were compared with non-symbiotic roots. Identification of up- and down-regulated gens in ectomycorrhizal roots lead to a number of insights into the molecular mechanisms governing this important symbiosis. In cork oak roots, ectomycorrhizal colonization resulted in extensive cell wall remodelling, activation of the secretory pathway, alterations in flavonoid biosynthesis, and expression of genes involved in the recognition of fungal effectors. In addition, we identified genes with putative roles in symbiotic processes such as nutrient exchange with the fungal partner, lateral root formation or root hair decay. These findings provide a global overview of the transcriptome of an ectomycorrhizal host root, and constitute a foundation for future studies on the molecular events controlling this important symbiosis.

  3. Interrelationships between mycorrhizal symbiosis, soil pH and plant sex modify the performance of Antennaria dioica

    NASA Astrophysics Data System (ADS)

    Varga, Sandra; Kytöviita, Minna-Maarit

    2010-05-01

    AM symbiosis is usually beneficial for plants, but the benefits gained may depend on the soil abiotic factors. In dioecious plants, female and male individuals have different resource demands and allocation patterns. As a consequence of these differences, it is logical to assume that female and male plants differ in their relationship with arbuscular mycorrhizal (AM) fungi, although this has rarely been examined. We used a factorial greenhouse experiment to investigate whether female and male plants in the dioecious model species Antennaria dioica have a different relationship with their AM symbionts under two soil pH levels. In particular, we asked: (1) Do the sexes in A. dioica have sex-specific benefits from AM symbiosis? (2) If so, which sex gains the highest benefit? (3) How does soil pH affect the sex - AM fungal relationship? Our results indicate that the sexes responded similarly to AM symbiosis and pH when mycorrhizal benefit was examined as growth and phosphorus accumulation. However, the sexes differed in response to AM symbiosis in terms of survival, as mortality was increased due to AM symbiosis in female plants whilst the opposite effect was detected in males. The plant-AM fungus relationship was significantly affected by soil pH as lowering the soil pH decreased the benefits gained by the plants from the mycorrhizal fungus. Taken together, our findings indicate that AM symbiosis is beneficial for plants depending on the life history trait considered. In addition, interactions between plants and their AM symbionts are modified by soil factors and the sex of the plant.

  4. Symbiosis and the origin of eukaryotic motility

    NASA Technical Reports Server (NTRS)

    Margulis, L.; Hinkle, G.

    1991-01-01

    Ongoing work to test the hypothesis of the origin of eukaryotic cell organelles by microbial symbioses is discussed. Because of the widespread acceptance of the serial endosymbiotic theory (SET) of the origin of plastids and mitochondria, the idea of the symbiotic origin of the centrioles and axonemes for spirochete bacteria motility symbiosis was tested. Intracellular microtubular systems are purported to derive from symbiotic associations between ancestral eukaryotic cells and motile bacteria. Four lines of approach to this problem are being pursued: (1) cloning the gene of a tubulin-like protein discovered in Spirocheata bajacaliforniesis; (2) seeking axoneme proteins in spirochets by antibody cross-reaction; (3) attempting to cultivate larger, free-living spirochetes; and (4) studying in detail spirochetes (e.g., Cristispira) symbiotic with marine animals. Other aspects of the investigation are presented.

  5. Brassinosteroids Regulate Root Growth, Development, and Symbiosis.

    PubMed

    Wei, Zhuoyun; Li, Jia

    2016-01-01

    Brassinosteroids (BRs) are natural plant hormones critical for growth and development. BR deficient or signaling mutants show significantly shortened root phenotypes. However, for a long time, it was thought that these phenotypes were solely caused by reduced cell elongation in the mutant roots. Functions of BRs in regulating root development have been largely neglected. Nonetheless, recent detailed analyses, revealed that BRs are not only involved in root cell elongation but are also involved in many aspects of root development, such as maintenance of meristem size, root hair formation, lateral root initiation, gravitropic response, mycorrhiza formation, and nodulation in legume species. In this review, current findings on the functions of BRs in mediating root growth, development, and symbiosis are discussed.

  6. Assess suitability of hydroaeroponic culture to establish tripartite symbiosis between different AMF species, beans, and rhizobia

    PubMed Central

    Tajini, Fatma; Suriyakup, Porntip; Vailhe, Hélène; Jansa, Jan; Drevon, Jean-Jacques

    2009-01-01

    Background Like other species of the Phaseoleae tribe, common bean (Phaseolus vulgaris L.) has the potential to establish symbiosis with rhizobia and to fix the atmospheric dinitrogen (N2) for its N nutrition. Common bean has also the potential to establish symbiosis with arbuscular mycorrhizal fungi (AMF) that improves the uptake of low mobile nutrients such as phosphorus, from the soil. Both rhizobial and mycorrhizal symbioses can act synergistically in benefits on plant. Results The tripartite symbiosis of common bean with rhizobia and arbuscular mycorrhizal fungi (AMF) was assessed in hydroaeroponic culture with common bean (Phaseolus vulgaris L.), by comparing the effects of three fungi spp. on growth, nodulation and mycorrhization of the roots under sufficient versus deficient P supplies, after transfer from initial sand culture. Although Glomus intraradices Schenck & Smith colonized intensely the roots of common bean in both sand and hydroaeroponic cultures, Gigaspora rosea Nicolson & Schenck only established well under sand culture conditions, and no root-colonization was found with Acaulospora mellea Spain & Schenck under either culture conditions. Interestingly, mycorrhization by Glomus was also obtained by contact with mycorrhized Stylosanthes guianensis (Aubl.) sw in sand culture under deficient P before transfer into hydroaeroponic culture. The effect of bean genotype on both rhizobial and mycorrhizal symbioses with Glomus was subsequently assessed with the common bean recombinant inbreed line 7, 28, 83, 115 and 147, and the cultivar Flamingo. Significant differences among colonization and nodulation of the roots and growth among genotypes were found. Conclusion The hydroaeroponic culture is a valuable tool for further scrutinizing the physiological interactions and nutrient partitioning within the tripartite symbiosis. PMID:19534785

  7. Arbuscular mycorrhizal symbiosis influences strigolactone production under salinity and alleviates salt stress in lettuce plants.

    PubMed

    Aroca, Ricardo; Ruiz-Lozano, Juan Manuel; Zamarreño, Angel María; Paz, José Antonio; García-Mina, José María; Pozo, María José; López-Ráez, Juan Antonio

    2013-01-01

    Arbuscular mycorrhizal (AM) symbiosis can alleviate salt stress in plants. However the intimate mechanisms involved, as well as the effect of salinity on the production of signalling molecules associated to the host plant-AM fungus interaction remains largely unknown. In the present work, we have investigated the effects of salinity on lettuce plant performance and production of strigolactones, and assessed its influence on mycorrhizal root colonization. Three different salt concentrations were applied to mycorrhizal and non-mycorrhizal plants, and their effects, over time, analyzed. Plant biomass, stomatal conductance, efficiency of photosystem II, as well as ABA content and strigolactone production were assessed. The expression of ABA biosynthesis genes was also analyzed. AM plants showed improved growth rates and a better performance of physiological parameters such as stomatal conductance and efficiency of photosystem II than non-mycorrhizal plants under salt stress since very early stages - 3 weeks - of plant colonization. Moreover, ABA levels were lower in those plants, suggesting that they were less stressed than non-colonized plants. On the other hand, we show that both AM symbiosis and salinity influence strigolactone production, although in a different way in AM and non-AM plants. The results suggest that AM symbiosis alleviates salt stress by altering the hormonal profiles and affecting plant physiology in the host plant. Moreover, a correlation between strigolactone production, ABA content, AM root colonization and salinity level is shown. We propose here that under these unfavourable conditions, plants increase strigolactone production in order to promote symbiosis establishment to cope with salt stress.

  8. Interactive effects of ocean acidification and rising sea temperatures alter predation rate and predator selectivity in reef fish communities.

    PubMed

    Ferrari, Maud C O; Munday, Philip L; Rummer, Jodie L; McCormick, Mark I; Corkill, Katherine; Watson, Sue-Ann; Allan, Bridie J M; Meekan, Mark G; Chivers, Douglas P

    2015-05-01

    Ocean warming and acidification are serious threats to marine life. While each stressor alone has been studied in detail, their combined effects on the outcome of ecological interactions are poorly understood. We measured predation rates and predator selectivity of two closely related species of damselfish exposed to a predatory dottyback. We found temperature and CO2 interacted synergistically on overall predation rate, but antagonistically on predator selectivity. Notably, elevated CO2 or temperature alone reversed predator selectivity, but the interaction between the two stressors cancelled selectivity. Routine metabolic rates of the two prey showed strong species differences in tolerance to CO2 and not temperature, but these differences did not correlate with recorded mortality. This highlights the difficulty of linking species-level physiological tolerance to resulting ecological outcomes. This study is the first to document both synergistic and antagonistic effects of elevated CO2 and temperature on a crucial ecological process like predator-prey dynamics.

  9. Determinant factors of industrial symbiosis: greening Pasir Gudang industrial park

    NASA Astrophysics Data System (ADS)

    Teh, B. T.; Ho, C. S.; Matsuoka, Y.; Chau, L. W.; Gomi, K.

    2014-02-01

    Green industry has been identified as an important element in attaining greater sustainability. It calls for harmonizing robust economic growth with environment protection. Industries, particularly in developing and transitional nations such as Malaysia, are in need of a reform. Many experts and international organizations suggest the concept of industrial symbiosis. Mainly, there are successful cases of industrial symbiosis practices around the world. However, there are numerous cases of failure too. As industrial symbiosis is an emerging new approach, with a short history of two decades, a lot of researches are generally focused on narrow context and technical details. There is a lack of concerted efforts to look into the drivers and barriers of industrial symbiosis across different cases. This paper aims to examine the factors influencing the development of industrial symbiosis from various countries to supports such networks to evolve in Pasir Gudang. The findings show institution, law and regulation, finance, awareness and capacity building, technology, research and development, information, collaboration, market, geography proximity, environmental issues and industry structure affect the formation of industrial symbiosis.

  10. Arbuscular mycorrhizal symbiosis can mitigate the negative effects of night warming on physiological traits of Medicago truncatula L.

    PubMed

    Hu, Yajun; Wu, Songlin; Sun, Yuqing; Li, Tao; Zhang, Xin; Chen, Caiyan; Lin, Ge; Chen, Baodong

    2015-02-01

    Elevated night temperature, one of the main climate warming scenarios, can have profound effects on plant growth and metabolism. However, little attention has been paid to the potential role of mycorrhizal associations in plant responses to night warming, although it is well known that symbiotic fungi can protect host plants against various environmental stresses. In the present study, physiological traits of Medicago truncatula L. in association with the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis were investigated under simulated night warming. A constant increase in night temperature of 1.53 °C significantly reduced plant shoot and root biomass, flower and seed number, leaf sugar concentration, and shoot Zn and root P concentrations. However, the AM association essentially mitigated these negative effects of night warming by improving plant growth, especially through increased root biomass, root to shoot ratio, and shoot Zn and root P concentrations. A significant interaction was observed between R. irregularis inoculation and night warming in influencing both root sucrose concentration and expression of sucrose synthase (SusS) genes, suggesting that AM symbiosis and increased night temperature jointly regulated plant sugar metabolism. Night warming stimulated AM fungal colonization but did not influence arbuscule abundance, symbiosis-related plant or fungal gene expression, or growth of extraradical mycelium, indicating little effect of night warming on the development or functioning of AM symbiosis. These findings highlight the importance of mycorrhizal symbiosis in assisting plant resilience to climate warming. PMID:25033924

  11. Menthol-induced bleaching rapidly and effectively provides experimental aposymbiotic sea anemones (Aiptasia sp.) for symbiosis investigations.

    PubMed

    Matthews, Jennifer L; Sproles, Ashley E; Oakley, Clinton A; Grossman, Arthur R; Weis, Virginia M; Davy, Simon K

    2016-02-01

    Experimental manipulation of the symbiosis between cnidarians and photosynthetic dinoflagellates (Symbiodinium spp.) is crucial to advancing the understanding of the cellular mechanisms involved in host-symbiont interactions, and overall coral reef ecology. The anemone Aiptasia sp. is a model for cnidarian-dinoflagellate symbiosis, and notably it can be rendered aposymbiotic (i.e. dinoflagellate-free) and re-infected with a range of Symbiodinium types. Various methods exist for generating aposymbiotic hosts; however, they can be hugely time consuming and not wholly effective. Here, we optimise a method using menthol for production of aposymbiotic Aiptasia. The menthol treatment produced aposymbiotic hosts within just 4 weeks (97-100% symbiont loss), and the condition was maintained long after treatment when anemones were held under a standard light:dark cycle. The ability of Aiptasia to form a stable symbiosis appeared to be unaffected by menthol exposure, as demonstrated by successful re-establishment of the symbiosis when anemones were experimentally re-infected. Furthermore, there was no significant impact on photosynthetic or respiratory performance of re-infected anemones. PMID:26596538

  12. Arbuscular mycorrhizal symbiosis can mitigate the negative effects of night warming on physiological traits of Medicago truncatula L.

    PubMed

    Hu, Yajun; Wu, Songlin; Sun, Yuqing; Li, Tao; Zhang, Xin; Chen, Caiyan; Lin, Ge; Chen, Baodong

    2015-02-01

    Elevated night temperature, one of the main climate warming scenarios, can have profound effects on plant growth and metabolism. However, little attention has been paid to the potential role of mycorrhizal associations in plant responses to night warming, although it is well known that symbiotic fungi can protect host plants against various environmental stresses. In the present study, physiological traits of Medicago truncatula L. in association with the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis were investigated under simulated night warming. A constant increase in night temperature of 1.53 °C significantly reduced plant shoot and root biomass, flower and seed number, leaf sugar concentration, and shoot Zn and root P concentrations. However, the AM association essentially mitigated these negative effects of night warming by improving plant growth, especially through increased root biomass, root to shoot ratio, and shoot Zn and root P concentrations. A significant interaction was observed between R. irregularis inoculation and night warming in influencing both root sucrose concentration and expression of sucrose synthase (SusS) genes, suggesting that AM symbiosis and increased night temperature jointly regulated plant sugar metabolism. Night warming stimulated AM fungal colonization but did not influence arbuscule abundance, symbiosis-related plant or fungal gene expression, or growth of extraradical mycelium, indicating little effect of night warming on the development or functioning of AM symbiosis. These findings highlight the importance of mycorrhizal symbiosis in assisting plant resilience to climate warming.

  13. Nitric oxide: a multifaceted regulator of the nitrogen-fixing symbiosis.

    PubMed

    Hichri, Imène; Boscari, Alexandre; Castella, Claude; Rovere, Martina; Puppo, Alain; Brouquisse, Renaud

    2015-05-01

    The specific interaction between legumes and Rhizobium-type bacteria leads to the establishment of a symbiotic relationship characterized by the formation of new differentiated organs named nodules, which provide a niche for bacterial nitrogen (N2) fixation. In the nodules, bacteria differentiate into bacteroids with the ability to fix atmospheric N2 via nitrogenase activity. As nitrogenase is strongly inhibited by oxygen, N2 fixation is made possible by the microaerophilic conditions prevailing in the nodules. Increasing evidence has shown the presence of NO during symbiosis, from early interaction steps between the plant and the bacterial partners to N2-fixing and senescence steps in mature nodules. Both the plant and the bacterial partners participate in NO synthesis. NO was found to be required for the optimal establishment of the symbiotic interaction. Transcriptomic analysis at an early stage of the symbiosis showed that NO is potentially involved in the repression of plant defence reactions, favouring the establishment of the plant-microbe interaction. In mature nodules, NO was shown to inhibit N2 fixation, but it was also demonstrated to have a regulatory role in nitrogen metabolism, to play a beneficial metabolic function for the maintenance of the energy status under hypoxic conditions, and to trigger nodule senescence. The present review provides an overview of NO sources and multifaceted effects from the early steps of the interaction to the senescence of the nodule, and presents several approaches which appear to be particularly promising in deciphering the roles of NO in N2-fixing symbioses.

  14. Academia–Industry Symbiosis in Organic Chemistry

    PubMed Central

    2015-01-01

    Conspectus Collaboration between academia and industry is a growing phenomenon within the chemistry community. These sectors have long held strong ties since academia traditionally trains the future scientists of the corporate world, but the recent drastic decrease of public funding is motivating the academic world to seek more private grants. This concept of industrial “sponsoring” is not new, and in the past, some companies granted substantial amounts of money per annum to various academic institutions in exchange for prime access to all their scientific discoveries and inventions. However, academic and industrial interests were not always aligned, and therefore the investment has become increasingly difficult to justify from industry’s point of view. With fluctuating macroeconomic factors, this type of unrestricted grant has become more rare and has been largely replaced by smaller and more focused partnerships. In our view, forging a partnership with industry can be a golden opportunity for both parties and can represent a true symbiosis. This type of project-specific collaboration is engendered by industry’s desire to access very specific academic expertise that is required for the development of new technologies at the forefront of science. Since financial pressures do not allow companies to spend the time to acquire this expertise and even less to explore fundamental research, partnering with an academic laboratory whose research is related to the problem gives them a viable alternative. From an academic standpoint, it represents the perfect occasion to apply “pure science” research concepts to solve problems that benefit humanity. Moreover, it offers a unique opportunity for students to face challenges from the “real world” at an early stage of their career. Although not every problem in industry can be solved by research developments in academia, we argue that there is significant scientific overlap between these two seemingly disparate

  15. Academia-industry symbiosis in organic chemistry.

    PubMed

    Michaudel, Quentin; Ishihara, Yoshihiro; Baran, Phil S

    2015-03-17

    Collaboration between academia and industry is a growing phenomenon within the chemistry community. These sectors have long held strong ties since academia traditionally trains the future scientists of the corporate world, but the recent drastic decrease of public funding is motivating the academic world to seek more private grants. This concept of industrial "sponsoring" is not new, and in the past, some companies granted substantial amounts of money per annum to various academic institutions in exchange for prime access to all their scientific discoveries and inventions. However, academic and industrial interests were not always aligned, and therefore the investment has become increasingly difficult to justify from industry's point of view. With fluctuating macroeconomic factors, this type of unrestricted grant has become more rare and has been largely replaced by smaller and more focused partnerships. In our view, forging a partnership with industry can be a golden opportunity for both parties and can represent a true symbiosis. This type of project-specific collaboration is engendered by industry's desire to access very specific academic expertise that is required for the development of new technologies at the forefront of science. Since financial pressures do not allow companies to spend the time to acquire this expertise and even less to explore fundamental research, partnering with an academic laboratory whose research is related to the problem gives them a viable alternative. From an academic standpoint, it represents the perfect occasion to apply "pure science" research concepts to solve problems that benefit humanity. Moreover, it offers a unique opportunity for students to face challenges from the "real world" at an early stage of their career. Although not every problem in industry can be solved by research developments in academia, we argue that there is significant scientific overlap between these two seemingly disparate groups, thereby presenting an

  16. Academia-industry symbiosis in organic chemistry.

    PubMed

    Michaudel, Quentin; Ishihara, Yoshihiro; Baran, Phil S

    2015-03-17

    Collaboration between academia and industry is a growing phenomenon within the chemistry community. These sectors have long held strong ties since academia traditionally trains the future scientists of the corporate world, but the recent drastic decrease of public funding is motivating the academic world to seek more private grants. This concept of industrial "sponsoring" is not new, and in the past, some companies granted substantial amounts of money per annum to various academic institutions in exchange for prime access to all their scientific discoveries and inventions. However, academic and industrial interests were not always aligned, and therefore the investment has become increasingly difficult to justify from industry's point of view. With fluctuating macroeconomic factors, this type of unrestricted grant has become more rare and has been largely replaced by smaller and more focused partnerships. In our view, forging a partnership with industry can be a golden opportunity for both parties and can represent a true symbiosis. This type of project-specific collaboration is engendered by industry's desire to access very specific academic expertise that is required for the development of new technologies at the forefront of science. Since financial pressures do not allow companies to spend the time to acquire this expertise and even less to explore fundamental research, partnering with an academic laboratory whose research is related to the problem gives them a viable alternative. From an academic standpoint, it represents the perfect occasion to apply "pure science" research concepts to solve problems that benefit humanity. Moreover, it offers a unique opportunity for students to face challenges from the "real world" at an early stage of their career. Although not every problem in industry can be solved by research developments in academia, we argue that there is significant scientific overlap between these two seemingly disparate groups, thereby presenting an

  17. A Symbiosis: Carbon Monitoring and Carbon Management

    NASA Astrophysics Data System (ADS)

    Macauley, M.

    2015-12-01

    "We measure what we value and value what we measure." This old dictum characterizes the usefulness of carbon monitoring in serving society, both in advancing research on carbon cycles and in applying new scientific knowledge to help carbon management. Many attempts to design policy for carbon management have been limited, ineffective, or otherwise unsuccessful in part due to inadequate capacity to observe carbon sources and sinks with sufficient measurement certainty and at appropriate spatial scale. Too often, policy designers fail to understand the complexities of carbon science and carbon researchers fail to align at least a portion of their science goals with policy requirements. The carbon monitoring systems research and applications activities under the auspices of the US National Aeronautics and Space Administration have significantly advanced both science and applications. To further this necessary symbiosis, this paper will synthesize current and prospective spatial and temporal requirements for emerging policy needs, discuss likely requirements for measurement certainty, and draw lessons from experiences in policies designed to monitor and manage other natural resources for which scientific research necessarily influenced policy design and effectiveness.

  18. Bacterial communities associated with the lichen symbiosis.

    PubMed

    Bates, Scott T; Cropsey, Garrett W G; Caporaso, J Gregory; Knight, Rob; Fierer, Noah

    2011-02-01

    Lichens are commonly described as a mutualistic symbiosis between fungi and "algae" (Chlorophyta or Cyanobacteria); however, they also have internal bacterial communities. Recent research suggests that lichen-associated microbes are an integral component of lichen thalli and that the classical view of this symbiotic relationship should be expanded to include bacteria. However, we still have a limited understanding of the phylogenetic structure of these communities and their variability across lichen species. To address these knowledge gaps, we used bar-coded pyrosequencing to survey the bacterial communities associated with lichens. Bacterial sequences obtained from four lichen species at multiple locations on rock outcrops suggested that each lichen species harbored a distinct community and that all communities were dominated by Alphaproteobacteria. Across all samples, we recovered numerous bacterial phylotypes that were closely related to sequences isolated from lichens in prior investigations, including those from a lichen-associated Rhizobiales lineage (LAR1; putative N(2) fixers). LAR1-related phylotypes were relatively abundant and were found in all four lichen species, and many sequences closely related to other known N(2) fixers (e.g., Azospirillum, Bradyrhizobium, and Frankia) were recovered. Our findings confirm the presence of highly structured bacterial communities within lichens and provide additional evidence that these bacteria may serve distinct functional roles within lichen symbioses.

  19. Symbiodinium sp. cells produce light-induced intra- and extracellular singlet oxygen, which mediates photodamage of the photosynthetic apparatus and has the potential to interact with the animal host in coral symbiosis.

    PubMed

    Rehman, Ateeq Ur; Szabó, Milán; Deák, Zsuzsanna; Sass, László; Larkum, Anthony; Ralph, Peter; Vass, Imre

    2016-10-01

    Coral bleaching is an important environmental phenomenon, whose mechanism has not yet been clarified. The involvement of reactive oxygen species (ROS) has been implicated, but direct evidence of what species are involved, their location and their mechanisms of production remains unknown. Histidine-mediated chemical trapping and singlet oxygen sensor green (SOSG) were used to detect intra- and extracellular singlet oxygen ((1) O2 ) in Symbiodinium cultures. Inhibition of the Calvin-Benson cycle by thermal stress or high light promotes intracellular (1) O2 formation. Histidine addition, which decreases the amount of intracellular (1) O2 , provides partial protection against photosystem II photoinactivation and chlorophyll (Chl) bleaching. (1) O2 production also occurs in cell-free medium of Symbiodinium cultures, an effect that is enhanced under heat and light stress and can be attributed to the excretion of (1) O2 -sensitizing metabolites from the cells. Confocal microscopy imaging using SOSG showed most extracellular (1) O2 around the cell surface, but it is also produced across the medium distant from the cells. We demonstrate, for the first time, both intra- and extracellular (1) O2 production in Symbiodinium cultures. Intracellular (1) O2 is associated with photosystem II photodamage and pigment bleaching, whereas extracellular (1) O2 has the potential to mediate the breakdown of symbiotic interaction between zooxanthellae and their animal host during coral bleaching. PMID:27321415

  20. Symbiodinium sp. cells produce light-induced intra- and extracellular singlet oxygen, which mediates photodamage of the photosynthetic apparatus and has the potential to interact with the animal host in coral symbiosis.

    PubMed

    Rehman, Ateeq Ur; Szabó, Milán; Deák, Zsuzsanna; Sass, László; Larkum, Anthony; Ralph, Peter; Vass, Imre

    2016-10-01

    Coral bleaching is an important environmental phenomenon, whose mechanism has not yet been clarified. The involvement of reactive oxygen species (ROS) has been implicated, but direct evidence of what species are involved, their location and their mechanisms of production remains unknown. Histidine-mediated chemical trapping and singlet oxygen sensor green (SOSG) were used to detect intra- and extracellular singlet oxygen ((1) O2 ) in Symbiodinium cultures. Inhibition of the Calvin-Benson cycle by thermal stress or high light promotes intracellular (1) O2 formation. Histidine addition, which decreases the amount of intracellular (1) O2 , provides partial protection against photosystem II photoinactivation and chlorophyll (Chl) bleaching. (1) O2 production also occurs in cell-free medium of Symbiodinium cultures, an effect that is enhanced under heat and light stress and can be attributed to the excretion of (1) O2 -sensitizing metabolites from the cells. Confocal microscopy imaging using SOSG showed most extracellular (1) O2 around the cell surface, but it is also produced across the medium distant from the cells. We demonstrate, for the first time, both intra- and extracellular (1) O2 production in Symbiodinium cultures. Intracellular (1) O2 is associated with photosystem II photodamage and pigment bleaching, whereas extracellular (1) O2 has the potential to mediate the breakdown of symbiotic interaction between zooxanthellae and their animal host during coral bleaching.

  1. DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis

    PubMed Central

    Floss, Daniela S.; Levy, Julien G.; Lévesque-Tremblay, Véronique; Pumplin, Nathan; Harrison, Maria J.

    2013-01-01

    Most flowering plants are able to form endosymbioses with arbuscular mycorrhizal fungi. In this mutualistic association, the fungus colonizes the root cortex and establishes elaborately branched hyphae, called arbuscules, within the cortical cells. Arbuscule development requires the cellular reorganization of both symbionts, and the resulting symbiotic interface functions in nutrient exchange. A plant symbiosis signaling pathway controls the development of the symbiosis. Several components of the pathway have been identified, but transcriptional regulators that control downstream pathways for arbuscule formation are still unknown. Here we show that DELLA proteins, which are repressors of gibberellic acid (GA) signaling and function at the nexus of several signaling pathways, are required for arbuscule formation. Arbuscule formation is severely impaired in a Medicago truncatula Mtdella1/Mtdella2 double mutant; GA treatment of wild-type roots phenocopies the della double mutant, and a dominant DELLA protein (della1-Δ18) enables arbuscule formation in the presence of GA. Ectopic expression of della1-Δ18 suggests that DELLA activity in the vascular tissue and endodermis is sufficient to enable arbuscule formation in the inner cortical cells. In addition, expression of della1-Δ18 restores arbuscule formation in the symbiosis signaling pathway mutant cyclops/ipd3, indicating an intersection between DELLA and symbiosis signaling for arbuscule formation. GA signaling also influences arbuscule formation in monocots, and a Green Revolution wheat variety carrying dominant DELLA alleles shows enhanced colonization but a limited growth response to arbuscular mycorrhizal symbiosis. PMID:24297892

  2. DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis.

    PubMed

    Floss, Daniela S; Levy, Julien G; Lévesque-Tremblay, Véronique; Pumplin, Nathan; Harrison, Maria J

    2013-12-17

    Most flowering plants are able to form endosymbioses with arbuscular mycorrhizal fungi. In this mutualistic association, the fungus colonizes the root cortex and establishes elaborately branched hyphae, called arbuscules, within the cortical cells. Arbuscule development requires the cellular reorganization of both symbionts, and the resulting symbiotic interface functions in nutrient exchange. A plant symbiosis signaling pathway controls the development of the symbiosis. Several components of the pathway have been identified, but transcriptional regulators that control downstream pathways for arbuscule formation are still unknown. Here we show that DELLA proteins, which are repressors of gibberellic acid (GA) signaling and function at the nexus of several signaling pathways, are required for arbuscule formation. Arbuscule formation is severely impaired in a Medicago truncatula Mtdella1/Mtdella2 double mutant; GA treatment of wild-type roots phenocopies the della double mutant, and a dominant DELLA protein (della1-Δ18) enables arbuscule formation in the presence of GA. Ectopic expression of della1-Δ18 suggests that DELLA activity in the vascular tissue and endodermis is sufficient to enable arbuscule formation in the inner cortical cells. In addition, expression of della1-Δ18 restores arbuscule formation in the symbiosis signaling pathway mutant cyclops/ipd3, indicating an intersection between DELLA and symbiosis signaling for arbuscule formation. GA signaling also influences arbuscule formation in monocots, and a Green Revolution wheat variety carrying dominant DELLA alleles shows enhanced colonization but a limited growth response to arbuscular mycorrhizal symbiosis.

  3. A review of industrial symbiosis research: theory and methodology

    NASA Astrophysics Data System (ADS)

    Zhang, Yan; Zheng, Hongmei; Chen, Bin; Su, Meirong; Liu, Gengyuan

    2015-03-01

    The theory, methodologies, and case studies in the field of industrial symbiosis have been developing for nearly 30 years. In this paper, we trace the development history of industrial symbiosis, and review its current theoretical and methodological bases, as well as trends in current research. Based on the research gaps that we identify, we provide suggestions to guide the future development of this approach to permit more comprehensive analyses. Our theoretical review includes key definitions, a classification system, and a description of the formation and development mechanisms. We discuss methodological studies from the perspective of individual industrial metabolic processes and network analysis. Analyzing specific metabolic processes can help to characterize the exchanges of materials and energy, and to reveal the ecological performance and economic benefits of the symbiosis. Network analysis methods are increasingly being used to analyze both the structural and functional characteristics of a system. Our suggestions for future research focus on three aspects: how to quantitatively classify industrial symbiosis systems, monitor the dynamics of a developing industrial symbiosis system, and analyze its internal attributes more deeply.

  4. Shared Skeletal Support in a Coral-Hydroid Symbiosis

    PubMed Central

    Pantos, Olga; Hoegh-Guldberg, Ove

    2011-01-01

    Hydroids form symbiotic relationships with a range of invertebrate hosts. Where they live with colonial invertebrates such as corals or bryozoans the hydroids may benefit from the physical support and protection of their host's hard exoskeleton, but how they interact with them is unknown. Electron microscopy was used to investigate the physical interactions between the colonial hydroid Zanclea margaritae and its reef-building coral host Acropora muricata. The hydroid tissues extend below the coral tissue surface sitting in direct contact with the host's skeleton. Although this arrangement provides the hydroid with protective support, it also presents problems of potential interference with the coral's growth processes and exposes the hydroid to overgrowth and smothering. Desmocytes located within the epidermal layer of the hydroid's perisarc-free hydrorhizae fasten it to the coral skeleton. The large apical surface area of the desmocyte and high bifurcation of the distal end within the mesoglea, as well as the clustering of desmocytes suggests that a very strong attachment between the hydroid and the coral skeleton. This is the first study to provide a detailed description of how symbiotic hydroids attach to their host's skeleton, utilising it for physical support. Results suggest that the loss of perisarc, a characteristic commonly associated with symbiosis, allows the hydroid to utilise desmocytes for attachment. The use of these anchoring structures provides a dynamic method of attachment, facilitating detachment from the coral skeleton during extension, thereby avoiding overgrowth and smothering enabling the hydroid to remain within the host colony for prolonged periods of time. PMID:21695083

  5. An antimicrobial peptide essential for bacterial survival in the nitrogen-fixing symbiosis.

    PubMed

    Kim, Minsoo; Chen, Yuhui; Xi, Jiejun; Waters, Christopher; Chen, Rujin; Wang, Dong

    2015-12-01

    In the nitrogen-fixing symbiosis between legume hosts and rhizobia, the bacteria are engulfed by a plant cell membrane to become intracellular organelles. In the model legume Medicago truncatula, internalization and differentiation of Sinorhizobium (also known as Ensifer) meliloti is a prerequisite for nitrogen fixation. The host mechanisms that ensure the long-term survival of differentiating intracellular bacteria (bacteroids) in this unusual association are unclear. The M. truncatula defective nitrogen fixation4 (dnf4) mutant is unable to form a productive symbiosis, even though late symbiotic marker genes are expressed in mutant nodules. We discovered that in the dnf4 mutant, bacteroids can apparently differentiate, but they fail to persist within host cells in the process. We found that the DNF4 gene encodes NCR211, a member of the family of nodule-specific cysteine-rich (NCR) peptides. The phenotype of dnf4 suggests that NCR211 acts to promote the intracellular survival of differentiating bacteroids. The greatest expression of DNF4 was observed in the nodule interzone II-III, where bacteroids undergo differentiation. A translational fusion of DNF4 with GFP localizes to the peribacteroid space, and synthetic NCR211 prevents free-living S. meliloti from forming colonies, in contrast to mock controls, suggesting that DNF4 may interact with bacteroids directly or indirectly for its function. Our findings indicate that a successful symbiosis requires host effectors that not only induce bacterial differentiation, but also that maintain intracellular bacteroids during the host-symbiont interaction. The discovery of NCR211 peptides that maintain bacterial survival inside host cells has important implications for improving legume crops.

  6. An antimicrobial peptide essential for bacterial survival in the nitrogen-fixing symbiosis

    PubMed Central

    Kim, Minsoo; Chen, Yuhui; Xi, Jiejun; Waters, Christopher; Chen, Rujin; Wang, Dong

    2015-01-01

    In the nitrogen-fixing symbiosis between legume hosts and rhizobia, the bacteria are engulfed by a plant cell membrane to become intracellular organelles. In the model legume Medicago truncatula, internalization and differentiation of Sinorhizobium (also known as Ensifer) meliloti is a prerequisite for nitrogen fixation. The host mechanisms that ensure the long-term survival of differentiating intracellular bacteria (bacteroids) in this unusual association are unclear. The M. truncatula defective nitrogen fixation4 (dnf4) mutant is unable to form a productive symbiosis, even though late symbiotic marker genes are expressed in mutant nodules. We discovered that in the dnf4 mutant, bacteroids can apparently differentiate, but they fail to persist within host cells in the process. We found that the DNF4 gene encodes NCR211, a member of the family of nodule-specific cysteine-rich (NCR) peptides. The phenotype of dnf4 suggests that NCR211 acts to promote the intracellular survival of differentiating bacteroids. The greatest expression of DNF4 was observed in the nodule interzone II-III, where bacteroids undergo differentiation. A translational fusion of DNF4 with GFP localizes to the peribacteroid space, and synthetic NCR211 prevents free-living S. meliloti from forming colonies, in contrast to mock controls, suggesting that DNF4 may interact with bacteroids directly or indirectly for its function. Our findings indicate that a successful symbiosis requires host effectors that not only induce bacterial differentiation, but also that maintain intracellular bacteroids during the host–symbiont interaction. The discovery of NCR211 peptides that maintain bacterial survival inside host cells has important implications for improving legume crops. PMID:26598690

  7. The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling.

    PubMed

    Zhang, Xiaowei; Dong, Wentao; Sun, Jongho; Feng, Feng; Deng, Yiwen; He, Zuhua; Oldroyd, Giles E D; Wang, Ertao

    2015-01-01

    The establishment of symbiotic interactions between mycorrhizal fungi, rhizobial bacteria and their legume hosts involves a common symbiosis signalling pathway. This signalling pathway is activated by Nod factors produced by rhizobia and these are recognised by the Nod factor receptors NFR1/LYK3 and NFR5/NFP. Mycorrhizal fungi produce lipochitooligosaccharides (LCOs) similar to Nod factors, as well as short-chain chitin oligomers (CO4/5), implying commonalities in signalling during mycorrhizal and rhizobial associations. Here we show that NFR1/LYK3, but not NFR5/NFP, is required for the establishment of the mycorrhizal interaction in legumes. NFR1/LYK3 is necessary for the recognition of mycorrhizal fungi and the activation of the symbiosis signalling pathway leading to induction of calcium oscillations and gene expression. Chitin oligosaccharides also act as microbe associated molecular patterns that promote plant immunity via similar LysM receptor-like kinases. CERK1 in rice has the highest homology to NFR1 and we show that this gene is also necessary for the establishment of the mycorrhizal interaction as well as for resistance to the rice blast fungus. Our results demonstrate that NFR1/LYK3/OsCERK1 represents a common receptor for chitooligosaccharide-based signals produced by mycorrhizal fungi, rhizobial bacteria (in legumes) and fungal pathogens. It would appear that mycorrhizal recognition has been conserved in multiple receptors across plant species, but additional diversification in certain plant species has defined other signals that this class of receptors can perceive.

  8. The nested structure of marine cleaning symbiosis: is it like flowers and bees?

    PubMed

    Guimarães, Paulo R; Sazima, Cristina; dos Reis, Sérgio Furtado; Sazima, Ivan

    2007-02-22

    In a given area, plant-animal mutualistic interactions form complex networks that often display nestedness, a particular type of asymmetry in interactions. Simple ecological and evolutionary factors have been hypothesized to lead to nested networks. Therefore, nestedness is expected to occur in other types of mutualisms as well. We tested the above prediction with the network structure of interactions in cleaning symbiosis at three reef assemblages. In this type of interaction, shrimps and fishes forage on ectoparasites and injured tissues from the body surface of fish species. Cleaning networks show strong patterns of nestedness. In fact, after controlling for species richness, cleaning networks are even more nested than plant-animal mutualisms. Our results support the notion that mutualisms evolve to a predictable community-level structure, be it in terrestrial or marine communities.

  9. [LEGUME-RHIZOBIUM SYMBIOSIS PROTEOMICS: ACHIEVEMENTS AND PERSPECTIVES].

    PubMed

    Kondratiuk, Iu Iu; Mamenko, P M; Kots, S Ya

    2015-01-01

    The present review contains results of proteomic researches of legume-rhizobium symbiosis. The technical difficulties associated with the methods of obtaining protein extracts from symbiotic structures and ways of overcoming them were discussed. The changes of protein synthesis under formation and functioning of symbiotic structures were shown. Special attention has been given to the importance of proteomic studies of plant-microbe structures in the formation of adaptation strategies under adverse environmental conditions. The technical and conceptual perspectives of legume-rhizobium symbiosis proteomics were shown.

  10. Preventing overexploitation in a mutualism: partner regulation in the crayfish-branchiobdellid symbiosis.

    PubMed

    Farrell, Kaitlin J; Creed, Robert P; Brown, Bryan L

    2014-02-01

    For a symbiosis to be a mutualism, benefits received must exceed costs incurred for both partners. Partners can prevent costly overexploitation through behaviors that moderate interactions with the other symbiont. In a symbiosis between crayfish and branchiobdellidan annelids, the worms can increase crayfish survival and growth by removing fouling material from the gills. However, overexploitation by the worms is possible and results in damage to host gills. We used behavioral observations to assess the degree to which two species of crayfish (Cambarus chasmodactylus and Orconectes cristavarius) use grooming to moderate their interaction with branchiobdellids. We found that grooming could effectively reduce worm numbers, and the proportion of total grooming directed at worms differed between crayfish species and as a function of worm number. O. cristavarius increased grooming in response to the addition of a single worm, while C. chasmodactylus only increased grooming in response to ten worms. These differences in the number of worms that trigger grooming behavior reflect differences between crayfish species in field settings. We also assessed whether antibacterial compounds in circulating crayfish hemolymph could limit bacterial gill fouling. O. cristavarius hemolymph inhibited some test bacteria more effectively than C. chasmodactylus did. Differences in the antibacterial properties of crayfish hemolymph may therefore help explain differences in both worm-directed grooming and worm loads in the field. We conclude that crayfish can use grooming to reduce worm numbers, which could lower the potential for gill damage, and that the level of grooming varies between crayfish species.

  11. Occurrence of a specific dual symbiosis in the excretory organ of geographically distant Nautiloids populations.

    PubMed

    Pernice, Mathieu; Boucher-Rodoni, Renata

    2012-10-01

    Nautilus is one of the most intriguing of all sea creatures, sharing morphological similarities with the extinct forms of coiled cephalopods that evolved since the Cambrian (542-488 mya). Further, bacterial symbioses found in their excretory organ are of particular interest as they provide a great opportunity to investigate the influence of host-microbe interactions upon the origin and evolution of an innovative nitrogen excretory system. To establish the potential of Nautilus excretory organ as a new symbiotic system, it is, however, necessary to assess the specificity of this symbiosis and whether it is consistent within the different species of present-day Nautiloids. By addressing the phylogeny and distribution of bacterial symbionts in three Nautilus populations separated by more than 6000 km (N. pompilius from Philippines and Vanuatu, and N. macromphalus from New Caledonia), this study confirms the specificity of this dual symbiosis involving the presence of betaproteobacteria and spirochaete symbionts on a very wide geographical area. Overall, this work sheds further light on Nautiloids excretory organ as an innovative system of interaction between bacteria and cephalopods.

  12. Quorum sensing in the squid-Vibrio symbiosis.

    PubMed

    Verma, Subhash C; Miyashiro, Tim

    2013-08-07

    Quorum sensing is an intercellular form of communication that bacteria use to coordinate group behaviors such as biofilm formation and the production of antibiotics and virulence factors. The term quorum sensing was originally coined to describe the mechanism underlying the onset of luminescence production in cultures of the marine bacterium Vibrio fischeri. Luminescence and, more generally, quorum sensing are important for V. fischeri to form a mutualistic symbiosis with the Hawaiian bobtail squid, Euprymna scolopes. The symbiosis is established when V. fischeri cells migrate via flagella-based motility from the surrounding seawater into a specialized structure injuvenile squid called the light organ. The cells grow to high cell densities within the light organ where the infection persists over the lifetime of the animal. A hallmark of a successful symbiosis is the luminescence produced by V. fischeri that camouflages the squid at night by eliminating its shadow within the water column. While the regulatory networks governing quorum sensing are critical for properly regulating V. fischeri luminescence within the squid light organ, they also regulate luminescence-independent processes during symbiosis. In this review, we discuss the quorum-sensing network of V. fischeri and highlight its impact at various stages during host colonization.

  13. Quorum Sensing in the Squid-Vibrio Symbiosis

    PubMed Central

    Verma, Subhash C.; Miyashiro, Tim

    2013-01-01

    Quorum sensing is an intercellular form of communication that bacteria use to coordinate group behaviors such as biofilm formation and the production of antibiotics and virulence factors. The term quorum sensing was originally coined to describe the mechanism underlying the onset of luminescence production in cultures of the marine bacterium Vibrio fischeri. Luminescence and, more generally, quorum sensing are important for V. fischeri to form a mutualistic symbiosis with the Hawaiian bobtail squid, Euprymna scolopes. The symbiosis is established when V. fischeri cells migrate via flagella-based motility from the surrounding seawater into a specialized structure injuvenile squid called the light organ. The cells grow to high cell densities within the light organ where the infection persists over the lifetime of the animal. A hallmark of a successful symbiosis is the luminescence produced by V. fischeri that camouflages the squid at night by eliminating its shadow within the water column. While the regulatory networks governing quorum sensing are critical for properly regulating V. fischeri luminescence within the squid light organ, they also regulate luminescence-independent processes during symbiosis. In this review, we discuss the quorum-sensing network of V. fischeri and highlight its impact at various stages during host colonization. PMID:23965960

  14. Signaling events during initiation of arbuscular mycorrhizal symbiosis.

    PubMed

    Schmitz, Alexa M; Harrison, Maria J

    2014-03-01

    Under nutrient-limiting conditions, plants will enter into symbiosis with arbuscular mycorrhizal (AM) fungi for the enhancement of mineral nutrient acquisition from the surrounding soil. AM fungi live in close, intracellular association with plant roots where they transfer phosphate and nitrogen to the plant in exchange for carbon. They are obligate fungi, relying on their host as their only carbon source. Much has been discovered in the last decade concerning the signaling events during initiation of the AM symbiosis, including the identification of signaling molecules generated by both partners. This signaling occurs through symbiosis-specific gene products in the host plant, which are indispensable for normal AM development. At the same time, plants have adapted complex mechanisms for avoiding infection by pathogenic fungi, including an innate immune response to general microbial molecules, such as chitin present in fungal cell walls. How it is that AM fungal colonization is maintained without eliciting a defensive response from the host is still uncertain. In this review, we present a summary of the molecular signals and their elicited responses during initiation of the AM symbiosis, including plant immune responses and their suppression.

  15. [HYDROBIOCENOSES--A MODEL SYSTEM OF ASSOCIATIVE SYMBIOSIS].

    PubMed

    Nemtseva, N V

    2015-01-01

    Evolutionary formed mechanisms, that preserve and support microorganism populations in any environmental conditions up to extreme, that are the base of survival strategy, were analyzed. Natural mechanisms, that support biodiversity and stability of ecosystems of natural water bodies, are shown to determine structuredness of hydrobiont communities by associative symbiosis type.

  16. Is the evolution of the coral-algal symbiosis linked to fluctuations in seawater magnesium concentrations?

    NASA Astrophysics Data System (ADS)

    Giri, S.; Devlin, Q.; Swart, P. K.

    2014-12-01

    While Scleractinia first appear in shallow tropical seas during the Mid-Triassic, it is unclear when and why these corals established their symbiosis with a dinoflagellate alga (Symbiodinium microadriaticum). The development of this symbiosis was a major evolutionary innovation for corals, which was not previously observed in other coral taxa (Rugosa and Tabulata) and likely contributed to the rise of Scleractinia as the dominant reef builders. Inarguably, this symbiotic relationship is linked to increased calcification rates but dinoflagellate symbioses are also very common in non-calcifying marine invertebrates making it unclear whether the coral host or algal symbiont drives the establishment of this symbiosis. Recently, it has been suggested that the establishment of the coral-algal symbiosis is symbiont driven by the fluctuation of the Mg/Ca ratio of seawater at the beginning of the Mesozoic. Scleractinia precipitate aragonitic skeletons further suggesting they evolved in seawater with a high Mg/Ca ratio and that their mineralogy is linked to their environment. In order to determine how seawater chemistry influences host-symbiont interactions, we grew Pocillopora damicornis in seawater with elevated calcium and magnesium concentrations. Growth rates are higher than the control treatment when the Mg2+ concentration is increased by 200 ppm but are not significantly different than the control treatment when the Ca2+ concentration is increased by 200 ppm, suggesting that calcification is linked to the Mg2+ concentration of seawater. Growth rates are not, however, related to in-hospite symbiont density, which is similar in the control, +200 ppm Ca2+ and +200 ppm Mg2+ treatments. This similarity in symbiont density between treatments suggests that even when the chemistry of the surrounding seawater fluctuates, with respect to Ca2+ and Mg2+ ions, the coral host provides a stable environment in which the symbionts can reside. This preliminary work has implications for

  17. Social interactions, predation behaviour and fast start performance are affected by ammonia exposure in brown trout (Salmo trutta L.).

    PubMed

    Tudorache, Christian; Blust, R; De Boeck, G

    2008-11-11

    In fish, fast starts are brief, sudden accelerations during predator-prey encounters. They serve for escape and predation and are therefore ecologically important movements. Fast starts are generated by glycolytic muscle performance and are influenced by many internal and external factors. It is known that ammonia pollution has a major effect on the glycolytic muscle action, thus creating conditions in which fast start performance might be reduced and predation rates altered. Therefore, escape response and predation strikes were investigated in brown trout (Salmo trutta) of 10 and 20 cm body length exposed to an elevated (1 mg l(-1)) ammonia concentration for 24 and 96 h. Various locomotor and behavioural variables were measured. In C-starts, i.e. an escape start where the fish bends into a C-shaped position, ammonia exposure had no effect on response latency. After 96 h of exposure, cumulative distance, maximum swimming speed and turning radius of the prey were all significantly reduced and the escape went in no definite direction. The effect of ammonia exposure was more pronounced in large fish than in small fish. Predation strikes were also affected. Distance, speed and turning radius were significantly lower in exposed fish. Agonistic behaviour of dominant fish was significantly reduced and fish spent more time resting. Predator behaviour was also altered and the number of prey captured was reduced. This study shows that ammonia exposure affects brown trout escape response mainly through a reduction in fast start velocity and through an impairment of directionality. Thus, in addition to a reduced strength of the response, ammonia exposure could also reduce the fish's elusiveness facing a predator. Predation rate and social interactions are disrupted and predator-prey relationships could be altered.

  18. The genome of Aiptasia, a sea anemone model for coral symbiosis.

    PubMed

    Baumgarten, Sebastian; Simakov, Oleg; Esherick, Lisl Y; Liew, Yi Jin; Lehnert, Erik M; Michell, Craig T; Li, Yong; Hambleton, Elizabeth A; Guse, Annika; Oates, Matt E; Gough, Julian; Weis, Virginia M; Aranda, Manuel; Pringle, John R; Voolstra, Christian R

    2015-09-22

    The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea anemone Aiptasia provides a tractable laboratory model for investigating these mechanisms. Here we report on the assembly and analysis of the Aiptasia genome, which will provide a foundation for future studies and has revealed several features that may be key to understanding the evolution and function of the endosymbiosis. These features include genomic rearrangements and taxonomically restricted genes that may be functionally related to the symbiosis, aspects of host dependence on alga-derived nutrients, a novel and expanded cnidarian-specific family of putative pattern-recognition receptors that might be involved in the animal-algal interactions, and extensive lineage-specific horizontal gene transfer. Extensive integration of genes of prokaryotic origin, including genes for antimicrobial peptides, presumably reflects an intimate association of the animal-algal pair also with its prokaryotic microbiome. PMID:26324906

  19. Protein actors sustaining arbuscular mycorrhizal symbiosis: underground artists break the silence.

    PubMed

    Recorbet, Ghislaine; Abdallah, Cosette; Renaut, Jenny; Wipf, Daniel; Dumas-Gaudot, Eliane

    2013-07-01

    The roots of most land plants can enter a relationship with soil-borne fungi belonging to the phylum Glomeromycota. This symbiosis with arbuscular mycorrhizal (AM) fungi belongs to the so-called biotrophic interactions, involving the intracellular accommodation of a microorganism by a living plant cell without causing the death of the host. Although profiling technologies have generated an increasing depository of plant and fungal proteins eligible for sustaining AM accommodation and functioning, a bottleneck exists for their functional analysis as these experiments are difficult to carry out with mycorrhiza. Nonetheless, the expansion of gene-to-phenotype reverse genetic tools, including RNA interference and transposon silencing, have recently succeeded in elucidating some of the plant-related protein candidates. Likewise, despite the ongoing absence of transformation tools for AM fungi, host-induced gene silencing has allowed knockdown of fungal gene expression in planta for the first time, thus unlocking a technological limitation in deciphering the functional pertinence of glomeromycotan proteins during mycorrhizal establishment. This review is thus intended to draw a picture of our current knowledge about the plant and fungal protein actors that have been demonstrated to be functionally implicated in sustaining AM symbiosis mostly on the basis of silencing approaches.

  20. The genome of Aiptasia, a sea anemone model for coral symbiosis

    PubMed Central

    Baumgarten, Sebastian; Simakov, Oleg; Esherick, Lisl Y.; Liew, Yi Jin; Lehnert, Erik M.; Michell, Craig T.; Li, Yong; Hambleton, Elizabeth A.; Guse, Annika; Oates, Matt E.; Gough, Julian; Weis, Virginia M.; Aranda, Manuel; Pringle, John R.; Voolstra, Christian R.

    2015-01-01

    The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea anemone Aiptasia provides a tractable laboratory model for investigating these mechanisms. Here we report on the assembly and analysis of the Aiptasia genome, which will provide a foundation for future studies and has revealed several features that may be key to understanding the evolution and function of the endosymbiosis. These features include genomic rearrangements and taxonomically restricted genes that may be functionally related to the symbiosis, aspects of host dependence on alga-derived nutrients, a novel and expanded cnidarian-specific family of putative pattern-recognition receptors that might be involved in the animal–algal interactions, and extensive lineage-specific horizontal gene transfer. Extensive integration of genes of prokaryotic origin, including genes for antimicrobial peptides, presumably reflects an intimate association of the animal–algal pair also with its prokaryotic microbiome. PMID:26324906

  1. Bacterial Symbiosis Maintenance in the Asexually Reproducing and Regenerating Flatworm Paracatenula galateia

    PubMed Central

    Dirks, Ulrich; Gruber-Vodicka, Harald R.; Leisch, Nikolaus; Bulgheresi, Silvia; Egger, Bernhard; Ladurner, Peter; Ott, Jörg A.

    2012-01-01

    Bacteriocytes set the stage for some of the most intimate interactions between animal and bacterial cells. In all bacteriocyte possessing systems studied so far, de novo formation of bacteriocytes occurs only once in the host development, at the time of symbiosis establishment. Here, we present the free-living symbiotic flatworm Paracatenula galateia and its intracellular, sulfur-oxidizing bacteria as a system with previously undescribed strategies of bacteriocyte formation and bacterial symbiont transmission. Using thymidine analogue S-phase labeling and immunohistochemistry, we show that all somatic cells in adult worms – including bacteriocytes – originate exclusively from aposymbiotic stem cells (neoblasts). The continued bacteriocyte formation from aposymbiotic stem cells in adult animals represents a previously undescribed strategy of symbiosis maintenance and makes P. galateia a unique system to study bacteriocyte differentiation and development. We also provide morphological and immunohistochemical evidence that P. galateia reproduces by asexual fragmentation and regeneration (paratomy) and, thereby, vertically transmits numerous symbiont-containing bacteriocytes to its asexual progeny. Our data support the earlier reported hypothesis that the symbiont population is subjected to reduced bottleneck effects. This would justify both the codiversification between Paracatenula hosts and their Candidatus Riegeria symbionts, and the slow evolutionary rates observed for several symbiont genes. PMID:22509347

  2. Bacterial symbiosis maintenance in the asexually reproducing and regenerating flatworm Paracatenula galateia.

    PubMed

    Dirks, Ulrich; Gruber-Vodicka, Harald R; Leisch, Nikolaus; Bulgheresi, Silvia; Egger, Bernhard; Ladurner, Peter; Ott, Jörg A

    2012-01-01

    Bacteriocytes set the stage for some of the most intimate interactions between animal and bacterial cells. In all bacteriocyte possessing systems studied so far, de novo formation of bacteriocytes occurs only once in the host development, at the time of symbiosis establishment. Here, we present the free-living symbiotic flatworm Paracatenula galateia and its intracellular, sulfur-oxidizing bacteria as a system with previously undescribed strategies of bacteriocyte formation and bacterial symbiont transmission. Using thymidine analogue S-phase labeling and immunohistochemistry, we show that all somatic cells in adult worms - including bacteriocytes - originate exclusively from aposymbiotic stem cells (neoblasts). The continued bacteriocyte formation from aposymbiotic stem cells in adult animals represents a previously undescribed strategy of symbiosis maintenance and makes P. galateia a unique system to study bacteriocyte differentiation and development. We also provide morphological and immunohistochemical evidence that P. galateia reproduces by asexual fragmentation and regeneration (paratomy) and, thereby, vertically transmits numerous symbiont-containing bacteriocytes to its asexual progeny. Our data support the earlier reported hypothesis that the symbiont population is subjected to reduced bottleneck effects. This would justify both the codiversification between Paracatenula hosts and their Candidatus Riegeria symbionts, and the slow evolutionary rates observed for several symbiont genes.

  3. The first thousand days - intestinal microbiology of early life: establishing a symbiosis.

    PubMed

    Wopereis, Harm; Oozeer, Raish; Knipping, Karen; Belzer, Clara; Knol, Jan

    2014-08-01

    The development of the intestinal microbiota in the first years of life is a dynamic process significantly influenced by early-life nutrition. Pioneer bacteria colonizing the infant intestinal tract and the gradual diversification to a stable climax ecosystem plays a crucial role in establishing host-microbe interactions essential for optimal symbiosis. This colonization process and establishment of symbiosis may profoundly influence health throughout life. Recent developments in microbiologic cultivation-independent methods allow a detailed view of the key players and factors involved in this process and may further elucidate their roles in a healthy gut and immune maturation. Aberrant patterns may lead to identifying key microbial signatures involved in developing immunologic diseases into adulthood, such as asthma and atopic diseases. The central role of early-life nutrition in the developmental human microbiota, immunity, and metabolism offers promising strategies for prevention and treatment of such diseases. This review provides an overview of the development of the intestinal microbiota, its bidirectional relationship with the immune system, and its role in impacting health and disease, with emphasis on allergy, in early life.

  4. The genome of Aiptasia, a sea anemone model for coral symbiosis.

    PubMed

    Baumgarten, Sebastian; Simakov, Oleg; Esherick, Lisl Y; Liew, Yi Jin; Lehnert, Erik M; Michell, Craig T; Li, Yong; Hambleton, Elizabeth A; Guse, Annika; Oates, Matt E; Gough, Julian; Weis, Virginia M; Aranda, Manuel; Pringle, John R; Voolstra, Christian R

    2015-09-22

    The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea anemone Aiptasia provides a tractable laboratory model for investigating these mechanisms. Here we report on the assembly and analysis of the Aiptasia genome, which will provide a foundation for future studies and has revealed several features that may be key to understanding the evolution and function of the endosymbiosis. These features include genomic rearrangements and taxonomically restricted genes that may be functionally related to the symbiosis, aspects of host dependence on alga-derived nutrients, a novel and expanded cnidarian-specific family of putative pattern-recognition receptors that might be involved in the animal-algal interactions, and extensive lineage-specific horizontal gene transfer. Extensive integration of genes of prokaryotic origin, including genes for antimicrobial peptides, presumably reflects an intimate association of the animal-algal pair also with its prokaryotic microbiome.

  5. Fungal symbiosis and precipitation alter traits and dune building by the ecosystem engineer, Ammophila breviligulata.

    PubMed

    Emery, Sarah M; Bell-Dereske, Lukas; Rudgers, Jennifer A

    2015-04-01

    Ecosystem engineer species influence their community and ecosystem by creating or altering the physical structure of habitats. The function of ecosystem engineers is variable and can depend on both abiotic and biotic factors. Here we make use of a primary successional system to evaluate the direct and interactive effects of climate change (precipitation) and fungal endophyte symbiosis on population traits and ecosystem function of the ecosystem engineering grass species, Ammophila breviligulata. We manipulated endophyte presence in A. breviligulata in combination with rain-out shelters and rainfall additions in a factorial field experiment established in 2010 on Lake Michigan sand dunes. We monitored plant traits, survival, growth, and sexual reproduction of A. breviligulata from 2010-2013, and quantified ecosystem engineering as the sand accumulation rate. Presence of the endophyte in A. breviligulata increased vegetative growth by up to 19%, and reduced sexual reproduction by up to 46% across all precipitation treatments. Precipitation was a less significant factor than endophyte colonization for A. breviligulata growth. Reduced precipitation increased average leaf number per tiller but had no other effects on plant traits. Changes in A. breviligulata traits corresponded to increases in sand accumulation in plots with the endophyte as well as in plots with reduced precipitation. Sand accumulation is a key ecosystem function in these primary successional habitats, and so microbial symbiosis in this ecosystem engineer could lead to direct effects on the value of these dune habitats for humans.

  6. A tale of two phylogenies: comparative analyses of ecological interactions.

    PubMed

    Hadfield, Jarrod D; Krasnov, Boris R; Poulin, Robert; Nakagawa, Shinichi

    2014-02-01

    The evolution of traits involved in ecological interactions such as predator-prey, host-parasite, and plant-pollinator interactions, are likely to be shaped by the phylogenetic history of both parties. We develop generalized linear mixed-effects models (GLMM) that estimate the effect of both parties' phylogenetic history on trait evolution, both in isolation but also in terms of how the two histories interact. Using data on the incidence and abundance of 206 flea species on 121 mammal species, we illustrate our method and compare it to previously used methods for detecting host-parasite coevolution. At large spatial scales we find that the phylogenetic interaction effect was substantial, indicating that related parasite species were more likely to be found on related host species. At smaller spatial scales, and when sampling effort was not controlled for, phylogenetic effects on the number and types of parasite species harbored by hosts were found to dominate. We go on to show that in situations where these additional phylogenetic effects exist, then previous methods have very high Type I error rates when testing for the phylogenetic interaction. Our GLMM method represents a robust and reliable approach to quantify the phylogenetic effects of traits determined by, or defined by, ecological interactions and has the advantage that it can easily be extended and interpreted in a broader context than existing permutation tests.

  7. Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes.

    PubMed

    Kowalski, Kurt P; Bacon, Charles; Bickford, Wesley; Braun, Heather; Clay, Keith; Leduc-Lapierre, Michèle; Lillard, Elizabeth; McCormick, Melissa K; Nelson, Eric; Torres, Monica; White, James; Wilcox, Douglas A

    2015-01-01

    A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into invasive success and potentially new and effective control approaches. In this manuscript, we review microbial relationships with plants, outline steps necessary to develop invasive species control strategies that are based on those relationships, and use the invasive plant species Phragmites australis (common reed) as an example of how development of microbial-based control strategies can be enhanced using a collective impact approach. The proposed science agenda, developed by the Collaborative for Microbial Symbiosis and Phragmites Management, contains a foundation of sequential steps and mutually-reinforcing tasks to guide the development of microbial-based control strategies for Phragmites and other invasive species. Just as the science of plant-microbial symbiosis can be transferred for use in other invasive species, so too can the model of collective impact be applied to other avenues of research and management.

  8. Symbiosis-related pea genes modulate fungal and plant gene expression during the arbuscule stage of mycorrhiza with Glomus intraradices.

    PubMed

    Kuznetsova, Elena; Seddas-Dozolme, Pascale M A; Arnould, Christine; Tollot, Marie; van Tuinen, Diederik; Borisov, Alexey; Gianinazzi, Silvio; Gianinazzi-Pearson, Vivienne

    2010-08-01

    The arbuscular mycorrhiza association results from a successful interaction between genomes of the plant and fungal symbiotic partners. In this study, we analyzed the effect of inactivation of late-stage symbiosis-related pea genes on symbiosis-associated fungal and plant molecular responses in order to gain insight into their role in the functional mycorrhizal association. The expression of a subset of ten fungal and eight plant genes, previously reported to be activated during mycorrhiza development, was compared in Glomus intraradices-inoculated wild-type and isogenic genotypes of pea mutated for the PsSym36, PsSym33, and PsSym40 genes where arbuscule formation is inhibited or fungal turnover modulated, respectively. Microdissection was used to corroborate arbuscule-related fungal gene expression. Molecular responses varied between pea genotypes and with fungal development. Most of the fungal genes were downregulated when arbuscule formation was defective, and several were upregulated with more rapid fungal development. Some of the plant genes were also affected by inactivation of the PsSym36, PsSym33, and PsSym40 loci, but in a more time-dependent way during root colonization by G. intraradices. Results indicate a role of the late-stage symbiosis-related pea genes not only in mycorrhiza development but also in the symbiotic functioning of arbuscule-containing cells.

  9. Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes.

    PubMed

    Kowalski, Kurt P; Bacon, Charles; Bickford, Wesley; Braun, Heather; Clay, Keith; Leduc-Lapierre, Michèle; Lillard, Elizabeth; McCormick, Melissa K; Nelson, Eric; Torres, Monica; White, James; Wilcox, Douglas A

    2015-01-01

    A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into invasive success and potentially new and effective control approaches. In this manuscript, we review microbial relationships with plants, outline steps necessary to develop invasive species control strategies that are based on those relationships, and use the invasive plant species Phragmites australis (common reed) as an example of how development of microbial-based control strategies can be enhanced using a collective impact approach. The proposed science agenda, developed by the Collaborative for Microbial Symbiosis and Phragmites Management, contains a foundation of sequential steps and mutually-reinforcing tasks to guide the development of microbial-based control strategies for Phragmites and other invasive species. Just as the science of plant-microbial symbiosis can be transferred for use in other invasive species, so too can the model of collective impact be applied to other avenues of research and management. PMID:25745417

  10. Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes

    PubMed Central

    Kowalski, Kurt P.; Bacon, Charles; Bickford, Wesley; Braun, Heather; Clay, Keith; Leduc-Lapierre, Michèle; Lillard, Elizabeth; McCormick, Melissa K.; Nelson, Eric; Torres, Monica; White, James; Wilcox, Douglas A.

    2015-01-01

    A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into invasive success and potentially new and effective control approaches. In this manuscript, we review microbial relationships with plants, outline steps necessary to develop invasive species control strategies that are based on those relationships, and use the invasive plant species Phragmites australis (common reed) as an example of how development of microbial-based control strategies can be enhanced using a collective impact approach. The proposed science agenda, developed by the Collaborative for Microbial Symbiosis and Phragmites Management, contains a foundation of sequential steps and mutually-reinforcing tasks to guide the development of microbial-based control strategies for Phragmites and other invasive species. Just as the science of plant-microbial symbiosis can be transferred for use in other invasive species, so too can the model of collective impact be applied to other avenues of research and management. PMID:25745417

  11. Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes

    USGS Publications Warehouse

    Kowalski, Kurt P.; Bacon, Charles R.; Bickford, Wesley A.; Braun, Heather A.; Clay, Keith; Leduc-Lapierre, Michele; Lillard, Elizabeth; McCormick, Melissa K.; Nelson, Eric; Torres, Monica; White, James W. C.; Wilcox, Douglas A.

    2015-01-01

    A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into invasive success and potentially new and effective control approaches. In this manuscript, we review microbial relationships with plants, outline steps necessary to develop invasive species control strategies that are based on those relationships, and use the invasive plant species Phragmites australis (common reed) as an example of how development of microbial-based control strategies can be enhanced using a collective impact approach. The proposed science agenda, developed by the Collaborative for Microbial Symbiosis andPhragmites Management, contains a foundation of sequential steps and mutually-reinforcing tasks to guide the development of microbial-based control strategies for Phragmites and other invasive species. Just as the science of plant-microbial symbiosis can be transferred for use in other invasive species, so too can the model of collective impact be applied to other avenues of research and management.

  12. A 2-component system is involved in the early stages of the Pisolithus tinctorius-Pinus greggii symbiosis.

    PubMed

    Herrera-Martínez, Aseneth; Ruiz-Medrano, Roberto; Galván-Gordillo, Santiago Valentín; Toscano Morales, Roberto; Gómez-Silva, Lidia; Valdés, María; Hinojosa-Moya, Jesús; Xoconostle-Cázares, Beatriz

    2014-01-01

    Ectomycorrhizal symbiosis results in profound morphological and physiological modifications in both plant and fungus. This in turn is the product of differential gene expression in both co-symbionts, giving rise to specialized cell types capable of performing novel functions. During the precolonization stage, chemical signals from root exudates are sensed by the ectomycorrizal fungus, and vice versa, which are in principle responsible for the observed change in the developmental symbionts program. Little is known about the molecular mechanisms involved in the signaling and recognition between ectomycorrhizal fungi and their host plants. In the present work, we characterized a novel lactone, termed pinelactone, and identified a gene encoding for a histidine kinase in Pisolithus tictorius, which function is proposed to be the perception of the aforementioned metabolites. In this study, the use of closantel, a specific inhibitor of histidine kinase phosphorylation, affected the capacity for fungal colonization in the symbiosis between Pisolithus tinctorius and Pinus greggii, indicating that a 2-component system (TCS) may operate in the early events of plant-fungus interaction. Indeed, the metabolites induced the accumulation of Pisolithus tinctorius mRNA for a putative histidine kinase (termed Pthik1). Of note, Pthik1 was able to partially complement a S. cerevisiae histidine kinase mutant, demonstrating its role in the response to the presence of the aforementioned metabolites. Our results indicate a role of a 2-component pathway in the early stages of ectomycorrhizal symbiosis before colonization. Furthermore, a novel lactone from Pinus greggii root exudates may activate a signal transduction pathway that contributes to the establishment of the ectomycorrhizal symbiosis.

  13. Trophic interactions in a high arctic snow goose colony.

    PubMed

    Gauthier, Gilles; Bêty, Joël; Giroux, Jean-François; Rochefort, Line

    2004-04-01

    We examined the role of trophic interactions in structuring a high arctic tundra community characterized by a large breeding colony of greater snow geese (Chen caerulescens atlantica). According to the exploitation ecosystem hypothesis of Oksanen et al. (1981), food chains are controlled by top-down interactions. However, because the arctic primary productivity is low, herbivore populations are too small to support functional predator populations and these communities should thus be dominated by the plant/ herbivore trophic-level interaction. Since 1990, we have been monitoring annual abundance and productivity of geese, the impact of goose grazing, predator abundance (mostly arctic foxes, Alopex lagopus) and the abundance of lemmings, the other significant herbivore in this community, on Bylot Island, Nunavut, Canada. Goose grazing consistently removed a significant proportion of the standing crop (∼40%) in tundra wetlands every year. Grazing changed plant community composition and reduced the production of grasses and sedges to a low-level equilibrium compared to the situation where the presence of geese had been removed. Lemming cyclic fluctuations were strong and affected fox reproduction. Fox predation on goose eggs was severe and generated marked annual variation in goose productivity. Predation intensity on geese was closely related to the lemming cycle, a consequence of an indirect interaction between lemming and geese via shared predators. We conclude that, contrary to the exploitation ecosystem hypothesis, both the plant/herbivore and predator/prey interactions are significant in this arctic community. PMID:21680492

  14. Lotus japonicus E3 Ligase SEVEN IN ABSENTIA4 Destabilizes the Symbiosis Receptor-Like Kinase SYMRK and Negatively Regulates Rhizobial Infection[C][W

    PubMed Central

    Den Herder, Griet; Yoshida, Satoko; Antolín-Llovera, Meritxell; Ried, Martina K.; Parniske, Martin

    2012-01-01

    The Lotus japonicus SYMBIOSIS RECEPTOR-LIKE KINASE (SYMRK) is required for symbiotic signal transduction upon stimulation of root cells by microbial signaling molecules. Here, we identified members of the SEVEN IN ABSENTIA (SINA) E3 ubiquitin-ligase family as SYMRK interactors and confirmed their predicted ubiquitin-ligase activity. In Nicotiana benthamiana leaves, SYMRK–yellow fluorescent protein was localized at the plasma membrane, and interaction with SINAs, as determined by bimolecular fluorescence complementation, was observed in small punctae at the cytosolic interface of the plasma membrane. Moreover, fluorescence-tagged SINA4 partially colocalized with SYMRK and caused SYMRK relocalization as well as disappearance of SYMRK from the plasma membrane. Neither the localization nor the abundance of Nod-factor receptor1 was altered by the presence of SINA4. SINA4 was transcriptionally upregulated during root symbiosis, and rhizobia inoculated roots ectopically expressing SINA4 showed reduced SYMRK protein levels. In accordance with a negative regulatory role in symbiosis, infection thread development was impaired upon ectopic expression of SINA4. Our results implicate SINA4 E3 ubiquitin ligase in the turnover of SYMRK and provide a conceptual mechanism for its symbiosis-appropriate spatio-temporal containment. PMID:22534128

  15. Myeloid cells in tumour-immune interactions.

    PubMed

    Kareva, Irina; Berezovskaya, Faina; Castillo-Chavez, Carlos

    2010-07-01

    Despite highly developed specific immune responses, tumour cells often manage to escape recognition by the immune system, continuing to grow uncontrollably. Experimental work suggests that mature myeloid cells may be central to the activation of the specific immune response. Recognition and subsequent control of tumour growth by the cells of the specific immune response depend on the balance between immature (ImC) and mature (MmC) myeloid cells in the body. However, tumour cells produce cytokines that inhibit ImC maturation, altering the balance between ImC and MmC. Hence, the focus of this manuscript is on the study of the potential role of this inhibiting mechanism on tumour growth dynamics. A conceptual predator-prey type model that incorporates the dynamics and interactions of tumour cells, CD8(+) T cells, ImC and MmC is proposed in order to address the role of this mechanism. The prey (tumour) has a defence mechanism (blocking the maturation of ImC) that prevents the predator (immune system) from recognizing it. The model, a four-dimensional nonlinear system of ordinary differential equations, is reduced to a two-dimensional system using time-scale arguments that are tied to the maturation rate of ImC. Analysis shows that the model is capable of supporting biologically reasonable patterns of behaviour depending on the initial conditions. A range of parameters, where healing without external influences can occur, is identified both qualitatively and quantitatively.

  16. Root endophyte symbiosis in vitro between the ectomycorrhizal basidiomycete Tricholoma matsutake and the arbuscular mycorrhizal plant Prunus speciosa.

    PubMed

    Murata, Hitoshi; Yamada, Akiyoshi; Yokota, Satoru; Maruyama, Tsuyoshi; Endo, Naoki; Yamamoto, Kohei; Ohira, Tatsuro; Neda, Hitoshi

    2014-05-01

    We previously reported that Tricholoma matsutake and Tricholoma fulvocastaneum, ectomycorrhizal basidiomycetes that associate with Pinaceae and Fagaceae, respectively, in the Northern Hemisphere, could interact in vitro as a root endophyte of somatic plants of Cedrela odorata (Meliaceae), which naturally harbors arbuscular mycorrhizal fungi in South America, to form a characteristic rhizospheric colony or "shiro". We questioned whether this phenomenon could have occurred because of plant-microbe interactions between geographically separated species that never encounter one another in nature. In the present study, we document that these fungi formed root endophyte interactions and shiro within 140 days of inoculation with somatic plants of Prunus speciosa (=Cerasus speciosa, Rosaceae), a wild cherry tree that naturally harbors arbuscular mycorrhizal fungi in Japan. Compared with C. odorata, infected P. speciosa plants had less mycelial sheath surrounding the exodermis, and the older the roots, especially main roots, the more hyphae penetrated. In addition, a large number of juvenile roots were not associated with hyphae. We concluded that such root endophyte interactions were not events isolated to the interactions between exotic plants and microbes but could occur generally in vitro. Our pure culture system with a somatic plant allowed these fungi to express symbiosis-related phenotypes that varied with the plant host; these traits are innately programmed but suppressed in nature and could be useful in genetic analyses of plant-fungal symbiosis. PMID:24158697

  17. Arbuscular mycorrhizal symbiosis-mediated tomato tolerance to drought.

    PubMed

    Chitarra, Walter; Maserti, Biancaelena; Gambino, Giorgio; Guerrieri, Emilio; Balestrini, Raffaella

    2016-07-01

    A multidisciplinary approach, involving eco-physiological, morphometric, biochemical and molecular analyses, has been used to study the impact of two different AM fungi, i.e. Funneliformis mosseae and Rhizophagus intraradices, on tomato response to water stress. Overall, results show that AM symbiosis positively affects the tolerance to drought in tomato with a different plant response depending on the involved AM fungal species. PMID:27359066

  18. Eco-evolutionary experience in novel species interactions.

    PubMed

    Saul, Wolf-Christian; Jeschke, Jonathan M

    2015-03-01

    A better understanding of how ecological novelty influences interactions in new combinations of species is key for predicting interaction outcomes, and can help focus conservation and management efforts on preventing the introduction of novel organisms or species (including invasive species, GMOs, synthetic organisms, resurrected species and emerging pathogens) that seem particularly 'risky' for resident species. Here, we consider the implications of different degrees of eco-evolutionary experience of interacting resident and non-resident species, define four qualitative risk categories for estimating the probability of successful establishment and impact of novel species and discuss how the effects of novelty change over time. Focusing then on novel predator-prey interactions, we argue that novelty entails density-dependent advantages for non-resident species, with their largest effects often being at low prey densities. This is illustrated by a comparison of predator functional responses and prey predation risk curves between novel species and ecologically similar resident species, and raises important issues for the conservation of endangered resident prey species. PMID:25626585

  19. Recent advances in actinorhizal symbiosis signaling.

    PubMed

    Froussart, Emilie; Bonneau, Jocelyne; Franche, Claudine; Bogusz, Didier

    2016-04-01

    Nitrogen and phosphorus availability are frequent limiting factors in plant growth and development. Certain bacteria and fungi form root endosymbiotic relationships with plants enabling them to exploit atmospheric nitrogen and soil phosphorus. The relationships between bacteria and plants include nitrogen-fixing Gram-negative proteobacteria called rhizobia that are able to interact with most leguminous plants (Fabaceae) but also with the non-legume Parasponia (Cannabaceae), and actinobacteria Frankia, which are able to interact with about 260 species collectively called actinorhizal plants. Fungi involved in the relationship with plants include Glomeromycota that form an arbuscular mycorrhizal (AM) association intracellularly within the roots of more than 80% of land plants. Increasing numbers of reports suggest that the rhizobial association with legumes has recycled part of the ancestral program used by most plants to interact with AM fungi. This review focuses on the most recent progress made in plant genetic control of root nodulation that occurs in non-legume actinorhizal plant species.

  20. Expression Islands Clustered on the Symbiosis Island of the Mesorhizobium loti Genome

    PubMed Central

    Uchiumi, Toshiki; Ohwada, Takuji; Itakura, Manabu; Mitsui, Hisayuki; Nukui, Noriyuki; Dawadi, Pramod; Kaneko, Takakazu; Tabata, Satoshi; Yokoyama, Tadashi; Tejima, Kouhei; Saeki, Kazuhiko; Omori, Hirofumi; Hayashi, Makoto; Maekawa, Takaki; Sriprang, Rutchadaporn; Murooka, Yoshikatsu; Tajima, Shigeyuki; Simomura, Kenshiro; Nomura, Mika; Suzuki, Akihiro; Shimoda, Yoshikazu; Sioya, Kouki; Abe, Mikiko; Minamisawa, Kiwamu

    2004-01-01

    Rhizobia are symbiotic nitrogen-fixing soil bacteria that are associated with host legumes. The establishment of rhizobial symbiosis requires signal exchanges between partners in microaerobic environments that result in mutualism for the two partners. We developed a macroarray for Mesorhizobium loti MAFF303099, a microsymbiont of the model legume Lotus japonicus, and monitored the transcriptional dynamics of the bacterium during symbiosis, microaerobiosis, and starvation. Global transcriptional profiling demonstrated that the clusters of genes within the symbiosis island (611 kb), a transmissible region distinct from other chromosomal regions, are collectively expressed during symbiosis, whereas genes outside the island are downregulated. This finding implies that the huge symbiosis island functions as clustered expression islands to support symbiotic nitrogen fixation. Interestingly, most transposase genes on the symbiosis island were highly upregulated in bacteroids, as were nif, fix, fdx, and rpoN. The genome region containing the fixNOPQ genes outside the symbiosis island was markedly upregulated as another expression island under both microaerobic and symbiotic conditions. The symbiosis profiling data suggested that there was activation of amino acid metabolism, as well as nif-fix gene expression. In contrast, genes for cell wall synthesis, cell division, DNA replication, and flagella were strongly repressed in differentiated bacteroids. A highly upregulated gene in bacteroids, mlr5932 (encoding 1-aminocyclopropane-1-carboxylate deaminase), was disrupted and was confirmed to be involved in nodulation enhancement, indicating that disruption of highly expressed genes is a useful strategy for exploring novel gene functions in symbiosis. PMID:15060047

  1. Developmental Plasticity and Developmental Symbiosis: The Return of Eco-Devo.

    PubMed

    Gilbert, Scott F

    2016-01-01

    Ecological developmental biology is the study of the interactions between developing organisms and their environments. Organisms have evolved to use the environment as a source of important cues that can alter the trajectory of their development. First, developmental plasticity enables the genome to generate a repertoire of possible phenotypes, and environmental cues are often used to select the phenotype that appears most adaptive at that time. This facilitates evolutionary strategies such as phenotypic accommodation, genetic assimilation, and niche construction. Second, developmental symbiosis, wherein the developing animal utilizes cues from other organisms for normal cell differentiation and morphogenesis, has been found to be ubiquitous. The coevolution of symbiotic microbes and animal cells has often led to the dependency of an animal's development on particular microbial signals, making these cues essential and expected components of normal development.

  2. Some aspects of optimal human-computer symbiosis in multisensor geospatial data fusion

    NASA Astrophysics Data System (ADS)

    Levin, E.; Sergeyev, A.

    Nowadays vast amount of the available geospatial data provides additional opportunities for the targeting accuracy increase due to possibility of geospatial data fusion. One of the most obvious operations is determining of the targets 3D shapes and geospatial positions based on overlapped 2D imagery and sensor modeling. 3D models allows for the extraction of such information about targets, which cannot be measured directly based on single non-fused imagery. Paper describes ongoing research effort at Michigan Tech attempting to combine advantages of human analysts and computer automated processing for efficient human computer symbiosis for geospatial data fusion. Specifically, capabilities provided by integration into geospatial targeting interfaces novel human-computer interaction method such as eye-tracking and EEG was explored. Paper describes research performed and results in more details.

  3. Effector-Triggered Immunity Determines Host Genotype-Specific Incompatibility in Legume-Rhizobium Symbiosis.

    PubMed

    Yasuda, Michiko; Miwa, Hiroki; Masuda, Sachiko; Takebayashi, Yumiko; Sakakibara, Hitoshi; Okazaki, Shin

    2016-08-01

    Symbiosis between legumes and rhizobia leads to the formation of N2-fixing root nodules. In soybean, several host genes, referred to as Rj genes, control nodulation. Soybean cultivars carrying the Rj4 gene restrict nodulation by specific rhizobia such as Bradyrhizobium elkanii We previously reported that the restriction of nodulation was caused by B. elkanii possessing a functional type III secretion system (T3SS), which is known for its delivery of virulence factors by pathogenic bacteria. In the present study, we investigated the molecular basis for the T3SS-dependent nodulation restriction in Rj4 soybean. Inoculation tests revealed that soybean cultivar BARC-2 (Rj4/Rj4) restricted nodulation by B. elkanii USDA61, whereas its nearly isogenic line BARC-3 (rj4/rj4) formed nitrogen-fixing nodules with the same strain. Root-hair curling and infection threads were not observed in the roots of BARC-2 inoculated with USDA61, indicating that Rj4 blocked B. elkanii infection in the early stages. Accumulation of H2O2 and salicylic acid (SA) was observed in the roots of BARC-2 inoculated with USDA61. Transcriptome analyses revealed that inoculation of USDA61, but not its T3SS mutant in BARC-2, induced defense-related genes, including those coding for hypersensitive-induced responsive protein, which act in effector-triggered immunity (ETI) in Arabidopsis. These findings suggest that B. elkanii T3SS triggers the SA-mediated ETI-type response in Rj4 soybean, which consequently blocks symbiotic interactions. This study revealed a common molecular mechanism underlying both plant-pathogen and plant-symbiont interactions, and suggests that establishment of a root nodule symbiosis requires the evasion or suppression of plant immune responses triggered by rhizobial effectors. PMID:27373538

  4. Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

    PubMed

    Erlacher, Armin; Cernava, Tomislav; Cardinale, Massimiliano; Soh, Jung; Sensen, Christoph W; Grube, Martin; Berg, Gabriele

    2015-01-01

    Rhizobiales (Alphaproteobacteria) are well-known beneficial partners in plant-microbe interactions. Less is known about the occurrence and function of Rhizobiales in the lichen symbiosis, although it has previously been shown that Alphaproteobacteria are the dominating group in growing lichen thalli. We have analyzed the taxonomic structure and assigned functions to Rhizobiales within a metagenomic dataset of the lung lichen Lobaria pulmonaria L. One third (32.2%) of the overall bacteria belong to the Rhizobiales, in particular to the families Methylobacteriaceae, Bradyrhizobiaceae, and Rhizobiaceae. About 20% of our metagenomic assignments could not be placed in any of the Rhizobiales lineages, which indicates a yet undescribed bacterial diversity. SEED-based functional analysis focused on Rhizobiales and revealed functions supporting the symbiosis, including auxin and vitamin production, nitrogen fixation and stress protection. We also have used a specifically developed probe to localize Rhizobiales by confocal laser scanning microscopy after fluorescence in situ hybridization (FISH-CLSM). Bacteria preferentially colonized fungal surfaces, but there is clear evidence that members of the Rhizobiales are able to intrude at varying depths into the interhyphal gelatinous matrix of the upper lichen cortical layer and that at least occasionally some bacteria also are capable to colonize the interior of the fungal hyphae. Interestingly, the gradual development of an endosymbiotic bacterial life was found for lichen- as well as for fungal- and plant-associated bacteria. The new tools to study Rhizobiales, FISH microscopy and comparative metagenomics, suggest a similar beneficial role for lichens than for plants and will help to better understand the Rhizobiales-host interaction and their biotechnological potential. PMID:25713563

  5. Phage-bacteria interaction network in human oral microbiome.

    PubMed

    Wang, Jinfeng; Gao, Yuan; Zhao, Fangqing

    2016-07-01

    Although increasing knowledge suggests that bacteriophages play important roles in regulating microbial ecosystems, phage-bacteria interaction in human oral cavities remains less understood. Here we performed a metagenomic analysis to explore the composition and variation of oral dsDNA phage populations and potential phage-bacteria interaction. A total of 1,711 contigs assembled with more than 100 Gb shotgun sequencing data were annotated to 104 phages based on their best BLAST matches against the NR database. Bray-Curtis dissimilarities demonstrated that both phage and bacterial composition are highly diverse between periodontally healthy samples but show a trend towards homogenization in diseased gingivae samples. Significantly, according to the CRISPR arrays that record infection relationship between bacteria and phage, we found certain oral phages were able to invade other bacteria besides their putative bacterial hosts. These cross-infective phages were positively correlated with commensal bacteria while were negatively correlated with major periodontal pathogens, suggesting possible connection between these phages and microbial community structure in oral cavities. By characterizing phage-bacteria interaction as networks rather than exclusively pairwise predator-prey relationships, our study provides the first insight into the participation of cross-infective phages in forming human oral microbiota.

  6. Functional diversity in coral–dinoflagellate symbiosis

    PubMed Central

    Stat, Michael; Morris, Emily; Gates, Ruth D.

    2008-01-01

    Symbioses are widespread in nature and occur along a continuum from parasitism to mutualism. Coral–dinoflagellate symbioses are defined as mutualistic because both partners receive benefit from the association via the exchange of nutrients. This successful interaction underpins the growth and formation of coral reefs. The symbiotic dinoflagellate genus Symbiodinium is genetically diverse containing eight divergent lineages (clades A–H). Corals predominantly associate with clade C Symbiodinium and to a lesser extent with clades A, B, D, F, and G. Variation in the function and interactive physiology of different coral–dinoflagellate assemblages is virtually unexplored but is an important consideration when developing the contextual framework of factors that contribute to coral reef resilience. In this study, we present evidence that clade A Symbiodinium are functionally less beneficial to corals than the dominant clade C Symbiodinium and may represent parasitic rather than mutualistic symbionts. Our hypothesis is supported by (i) a significant correlation between the presence of Symbiodinium clade A and health-compromised coral; (ii) a phylogeny and genetic diversity within Symbiodinium that suggests a different evolutionary trajectory for clade A compared with the other dominant Symbiodinium lineages; and (iii) a significantly lower amount of carbon fixed and released by clade A in the presence of a coral synthetic host factor as compared with the dominant coral symbiont lineage, clade C. Collectively, these data suggest that along the symbiotic continuum the interaction between clade A Symbiodinium and corals may be closer to parasitism than mutualism. PMID:18591663

  7. Recent advances in actinorhizal symbiosis signaling.

    PubMed

    Froussart, Emilie; Bonneau, Jocelyne; Franche, Claudine; Bogusz, Didier

    2016-04-01

    Nitrogen and phosphorus availability are frequent limiting factors in plant growth and development. Certain bacteria and fungi form root endosymbiotic relationships with plants enabling them to exploit atmospheric nitrogen and soil phosphorus. The relationships between bacteria and plants include nitrogen-fixing Gram-negative proteobacteria called rhizobia that are able to interact with most leguminous plants (Fabaceae) but also with the non-legume Parasponia (Cannabaceae), and actinobacteria Frankia, which are able to interact with about 260 species collectively called actinorhizal plants. Fungi involved in the relationship with plants include Glomeromycota that form an arbuscular mycorrhizal (AM) association intracellularly within the roots of more than 80% of land plants. Increasing numbers of reports suggest that the rhizobial association with legumes has recycled part of the ancestral program used by most plants to interact with AM fungi. This review focuses on the most recent progress made in plant genetic control of root nodulation that occurs in non-legume actinorhizal plant species. PMID:26873697

  8. EXO70I Is Required for Development of a Sub-domain of the Periarbuscular Membrane during Arbuscular Mycorrhizal Symbiosis.

    PubMed

    Zhang, Xinchun; Pumplin, Nathan; Ivanov, Sergey; Harrison, Maria J

    2015-08-17

    In eukaryotic cells, polarized secretion mediated by exocytotic fusion of membrane vesicles with the plasma membrane is essential for spatially restricted expansion of the plasma membrane and for the delivery of molecules to specific locations at the membrane and/or cell surface. The EXOCYST complex is central to this process, and in yeast, regulation of the EXO70 subunit influences exocytosis and cargo specificity. In contrast to yeast and mammalian cells, plants have upwards of 23 EXO70 genes with largely unknown roles. During arbuscular mycorrhizal (AM) symbiosis, deposition of the plant periarbuscular membrane (PAM) around the fungal arbuscule creates an intracellular membrane interface between the symbionts. The PAM has two major membrane sub-domains, and symbiosis-specific transporter proteins are localized in the branch domain. Currently, the mechanisms and cellular machinery involved in biogenesis of the PAM are largely unknown. Here, we identify an EXO70I protein present exclusively in plants forming AM symbiosis. Medicago truncatula exo70i mutants are unable to support normal arbuscule development, and incorporation of two PAM-resident ABC transporters, STR and STR2, is limited. During arbuscule branching, EXO70I is located in spatially restricted zones adjacent to the PAM around the arbuscule hyphal tips where it interacts with Vapyrin, a plant-specific protein required for arbuscule development. We conclude that EXO70I provides a specific exocytotic capacity necessary for development of the main functional sub-domain of the PAM. Furthermore, in contrast to other eukaryotes, plant EXO70s have evolved distinct specificities and interaction partners to fulfill their specialized secretory requirements.

  9. NADPH oxidases in the arbuscular mycorrhizal symbiosis

    PubMed Central

    Belmondo, Simone; Calcagno, Cristina; Genre, Andrea; Puppo, Alain; Pauly, Nicolas; Lanfranco, Luisa

    2016-01-01

    ABSTRACT Plant NADPH oxidases are the major source of reactive oxygen species (ROS) that plays key roles as both signal and stressor in several plant processes, including defense responses against pathogens. ROS accumulation in root cells during arbuscular mycorrhiza (AM) development has raised the interest in understanding how ROS-mediated defense programs are modulated during the establishment of this mutualistic interaction. We have recently analyzed the expression pattern of 5 NADPH oxidase (also called RBOH) encoding genes in Medicago truncatula, showing that only one of them (MtRbohE) is specifically upregulated in arbuscule-containing cells. In line with this result, RNAi silencing of MtRbohE generated a strong alteration in root colonization, with a significant reduction in the number of arbusculated cells. On this basis, we propose that MtRBOHE-mediated ROS production plays a crucial role in the intracellular accommodation of arbuscules. PMID:27018627

  10. The engine of the reef: photobiology of the coral-algal symbiosis.

    PubMed

    Roth, Melissa S

    2014-01-01

    Coral reef ecosystems thrive in tropical oligotrophic oceans because of the relationship between corals and endosymbiotic dinoflagellate algae called Symbiodinium. Symbiodinium convert sunlight and carbon dioxide into organic carbon and oxygen to fuel coral growth and calcification, creating habitat for these diverse and productive ecosystems. Light is thus a key regulating factor shaping the productivity, physiology, and ecology of the coral holobiont. Similar to all oxygenic photoautotrophs, Symbiodinium must safely harvest sunlight for photosynthesis and dissipate excess energy to prevent oxidative stress. Oxidative stress is caused by environmental stressors such as those associated with global climate change, and ultimately leads to breakdown of the coral-algal symbiosis known as coral bleaching. Recently, large-scale coral bleaching events have become pervasive and frequent threatening and endangering coral reefs. Because the coral-algal symbiosis is the biological engine producing the reef, the future of coral reef ecosystems depends on the ecophysiology of the symbiosis. This review examines the photobiology of the coral-algal symbiosis with particular focus on the photophysiological responses and timescales of corals and Symbiodinium. Additionally, this review summarizes the light environment and its dynamics, the vulnerability of the symbiosis to oxidative stress, the abiotic and biotic factors influencing photosynthesis, the diversity of the coral-algal symbiosis, and recent advances in the field. Studies integrating physiology with the developing "omics" fields will provide new insights into the coral-algal symbiosis. Greater physiological and ecological understanding of the coral-algal symbiosis is needed for protection and conservation of coral reefs.

  11. Impediment to symbiosis establishment between giant clams and Symbiodinium algae due to sterilization of seawater.

    PubMed

    Kurihara, Takeo; Yamada, Hideaki; Inoue, Ken; Iwai, Kenji; Hatta, Masayuki

    2013-01-01

    To survive the juvenile stage, giant clam juveniles need to establish a symbiotic relationship with the microalgae Symbiodinium occurring in the environment. The percentage of giant clam juveniles succeeding in symbiosis establishment ("symbiosis rate") is often low, which is problematic for seed producers. We investigated how and why symbiosis rates vary, depending on whether giant clam seeds are continuously reared in UV treated or non treated seawater. Results repeatedly demonstrated that symbiosis rates were lower for UV treated seawater than for non treated seawater. Symbiosis rates were also lower for autoclaved seawater and 0.2-µm filtered seawater than for non treated seawater. The decreased symbiosis rates in various sterilized seawater suggest the possibility that some factors helping symbiosis establishment in natural seawater are weakened owing to sterilization. The possible factors include vitality of giant clam seeds, since additional experiments revealed that survival rates of seeds reared alone without Symbiodinium were lower in sterilized seawater than in non treated seawater. In conclusion, UV treatment of seawater was found to lead to decreased symbiosis rates, which is due possibly to some adverse effects common to the various sterilization techniques and relates to the vitality of the giant clam seeds.

  12. Impediment to Symbiosis Establishment between Giant Clams and Symbiodinium Algae Due to Sterilization of Seawater

    PubMed Central

    Kurihara, Takeo; Yamada, Hideaki; Inoue, Ken; Iwai, Kenji; Hatta, Masayuki

    2013-01-01

    To survive the juvenile stage, giant clam juveniles need to establish a symbiotic relationship with the microalgae Symbiodinium occurring in the environment. The percentage of giant clam juveniles succeeding in symbiosis establishment (“symbiosis rate”) is often low, which is problematic for seed producers. We investigated how and why symbiosis rates vary, depending on whether giant clam seeds are continuously reared in UV treated or non treated seawater. Results repeatedly demonstrated that symbiosis rates were lower for UV treated seawater than for non treated seawater. Symbiosis rates were also lower for autoclaved seawater and 0.2-µm filtered seawater than for non treated seawater. The decreased symbiosis rates in various sterilized seawater suggest the possibility that some factors helping symbiosis establishment in natural seawater are weakened owing to sterilization. The possible factors include vitality of giant clam seeds, since additional experiments revealed that survival rates of seeds reared alone without Symbiodinium were lower in sterilized seawater than in non treated seawater. In conclusion, UV treatment of seawater was found to lead to decreased symbiosis rates, which is due possibly to some adverse effects common to the various sterilization techniques and relates to the vitality of the giant clam seeds. PMID:23613802

  13. Implicit - symplectic partitioned (IMSP) Runge-Kutta schemes for predator-prey dynamics

    NASA Astrophysics Data System (ADS)

    Diele, F.; Marangi, C.; Ragni, S.

    2012-09-01

    In the study of the effects of habitat fragmentation on biodiversity the role of spatial processes reveals of great interest since both the variation of size of the domains as well as their heterogeneity largely affects the dynamics of species. In order to begin a preliminary study about the effects of habitat fragmentation on wolf - wild boar pair populating the Italian "Alta Murgia" Natura 2000 site, object of interest for FP7 project BIOSOS, (BIOdiversity multi-SOurce Monitoring System: from Space TO Species), spatially explicit models described by reaction-diffusion partial differential equations are considered. Numerical methods based on partitioned Runge-Kutta schemes which use an implicit scheme for the stiff diffusive term and a partitioned symplectic scheme for the reaction function are here proposed. We are motivated by the classical results about Lotka-Volterra model described by ordinary differential equations to which the spatially explicit model reduces for diffusion coefficients tending to zero: for their accurate solution symplectic schemes have to be used for an optimal long run preservation of the dynamics invariant. Moreover, for models based on logistic growth and Holling type II functional predator response we verify the better performance of our schemes when compared with classical implicit-explicit (IMEX) schemes on chaotic dynamics given in literature.

  14. Predator-prey size relationships in an African large-mammal food web.

    PubMed

    Owen-Smith, Norman; Mills, M G L

    2008-01-01

    1. Size relationships are central in structuring trophic linkages within food webs, leading to suggestions that the dietary niche of smaller carnivores is nested within that of larger species. However, past analyses have not taken into account the differing selection shown by carnivores for specific size ranges of prey, nor the extent to which the greater carcass mass of larger prey outweighs the greater numerical representation of smaller prey species in the predator diet. Furthermore, the top-down impact that predation has on prey abundance cannot be assessed simply in terms of the number of predator species involved. 2. Records of found carcasses and cause of death assembled over 46 years in the Kruger National Park, South Africa, corrected for under-recording of smaller species, enabled a definitive assessment of size relationships between large mammalian carnivores and their ungulate prey. Five carnivore species were considered, including lion (Panthera leo), leopard (Panthera pardus), cheetah (Acinonyx jubatus), African wild dog (Lycaon pictus) and spotted hyena (Crocuta crocuta), and 22 herbivore prey species larger than 10 kg in adult body mass. 3. These carnivores selectively favoured prey species approximately half to twice their mass, within a total prey size range from an order of magnitude below to an order of magnitude above the body mass of the predator. The three smallest carnivores, i.e. leopard, cheetah and wild dog, showed high similarity in prey species favoured. Despite overlap in prey size range, each carnivore showed a distinct dietary preference. 4. Almost all mortality was through the agency of a predator for ungulate species up to the size of a giraffe (800-1200 kg). Ungulates larger than twice the mass of the predator contributed substantially to the dietary intake of lions, despite the low proportional mortality inflicted by predation on these species. Only for megaherbivores substantially exceeding 1000 kg in adult body mass did predation become a negligible cause of mortality. 5. Hence, the relative size of predators and prey had a pervasive structuring influence on biomass fluxes within this large-mammal food web. Nevertheless, the large carnivore assemblage was dominated overwhelmingly by the largest predator, which contributed the major share of animals killed across a wide size range.

  15. Who Is Who: An Anomalous Predator-Prey Role Exchange between Cyprinids and Perch.

    PubMed

    Vejřík, Lukáš; Matějíčková, Ivana; Seďa, Jaromír; Blabolil, Petr; Jůza, Tomáš; Vašek, Mojmír; Ricard, Daniel; Matěna, Josef; Frouzová, Jaroslava; Kubečka, Jan; Říha, Milan; Čech, Martin

    2016-01-01

    Piscivory in cyprinids (Cyprinidae) is extremely rare. Specifically, common bream (Abramis brama) and common carp (Cyprinus carpio) are zooplanktivorous fish in deep lentic waters. Nevertheless, we observed predation by these two cyprinids under natural conditions in the Vír Reservoir, Czech Republic. We conducted diet analysis for cyprinids caught by trawling and gillnets and the large amount of young-of-the-year (YOY) perch (Perca fluviatilis), with sizes of 37-52 mm standard length, were found in their digestive tracts. In 2010, a large amount of YOY perch caused a significant decrease in Daphnia spp. size and abundance in the reservoir. Hence, a food deficit was induced for the cyprinids, apparent also from the poor nutritional condition of common bream which was much worse than the condition of those in similar reservoirs. Common carp and common bream shifted to forced piscivory, and they utilized the YOY perch as an alternative food source. In contrast, smaller species, such as roach (Rutilus rutilus) and bleak (Alburnus alburnus), widely utilized planktonic cyanobacteria. In the following year, YOY perch occurred in significantly lower numbers and conversely, Daphnia spp. size and abundance were significantly higher. The forced piscivory was not observed. Our results indicate a switch to forced piscivory by cyprinids, which was caused by a shortage of their natural food source. Moreover, this phenomenon presents an effective mechanism for reduction in the numbers of YOY perch, ensuring the stability of the ecosystem.

  16. The dynamics of a delayed predator-prey model with state dependent feedback control

    SciTech Connect

    Singh, Anuraj; Gakkhar, Sunita

    2011-11-30

    A delayed prey-predator model with state-dependent impulses is investigated. The sufficient conditions of existence and stability of semi-trivial solution and positive period-1 solution are obtained by using the Poincare map and analogue of the Poincare Criterion. The qualitative analysis shows that the positive period-one solution bifurcates from the semi-trivial solution through a fold bifurcation. The complex dynamics including chaos is obtained and numerical simulations substantiate the analytical results.

  17. A NEW ADAPTIVE SYSTEM APPROACH TO PREDATOR-PREY MODELING. (R830819)

    EPA Science Inventory

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  18. Predator-prey Encounter Rates in Turbulent Environments: Consequences of Inertia Effects and Finite Sizes

    SciTech Connect

    Pecseli, H. L.; Trulsen, J.

    2009-10-08

    Experimental as well as theoretical studies have demonstrated that turbulence can play an important role for the biosphere in marine environments, in particular also by affecting prey-predator encounter rates. Reference models for the encounter rates rely on simplifying assumptions of predators and prey being described as point particles moving passively with the local flow velocity. Based on simple arguments that can be tested experimentally we propose corrections for the standard expression for the encounter rates, where now finite sizes and Stokes drag effects are included.

  19. Who Is Who: An Anomalous Predator-Prey Role Exchange between Cyprinids and Perch

    PubMed Central

    Blabolil, Petr; Jůza, Tomáš; Vašek, Mojmír; Ricard, Daniel; Matěna, Josef; Frouzová, Jaroslava; Kubečka, Jan; Říha, Milan

    2016-01-01

    Piscivory in cyprinids (Cyprinidae) is extremely rare. Specifically, common bream (Abramis brama) and common carp (Cyprinus carpio) are zooplanktivorous fish in deep lentic waters. Nevertheless, we observed predation by these two cyprinids under natural conditions in the Vír Reservoir, Czech Republic. We conducted diet analysis for cyprinids caught by trawling and gillnets and the large amount of young-of-the-year (YOY) perch (Perca fluviatilis), with sizes of 37–52 mm standard length, were found in their digestive tracts. In 2010, a large amount of YOY perch caused a significant decrease in Daphnia spp. size and abundance in the reservoir. Hence, a food deficit was induced for the cyprinids, apparent also from the poor nutritional condition of common bream which was much worse than the condition of those in similar reservoirs. Common carp and common bream shifted to forced piscivory, and they utilized the YOY perch as an alternative food source. In contrast, smaller species, such as roach (Rutilus rutilus) and bleak (Alburnus alburnus), widely utilized planktonic cyanobacteria. In the following year, YOY perch occurred in significantly lower numbers and conversely, Daphnia spp. size and abundance were significantly higher. The forced piscivory was not observed. Our results indicate a switch to forced piscivory by cyprinids, which was caused by a shortage of their natural food source. Moreover, this phenomenon presents an effective mechanism for reduction in the numbers of YOY perch, ensuring the stability of the ecosystem. PMID:27276078

  20. The predator-prey power law: Biomass scaling across terrestrial and aquatic biomes.

    PubMed

    Hatton, Ian A; McCann, Kevin S; Fryxell, John M; Davies, T Jonathan; Smerlak, Matteo; Sinclair, Anthony R E; Loreau, Michel

    2015-09-01

    Ecosystems exhibit surprising regularities in structure and function across terrestrial and aquatic biomes worldwide. We assembled a global data set for 2260 communities of large mammals, invertebrates, plants, and plankton. We find that predator and prey biomass follow a general scaling law with exponents consistently near ¾. This pervasive pattern implies that the structure of the biomass pyramid becomes increasingly bottom-heavy at higher biomass. Similar exponents are obtained for community production-biomass relations, suggesting conserved links between ecosystem structure and function. These exponents are similar to many body mass allometries, and yet ecosystem scaling emerges independently from individual-level scaling, which is not fully understood. These patterns suggest a greater degree of ecosystem-level organization than previously recognized and a more predictive approach to ecological theory.