Design and testing of a uniformly solar energy TIR-R concentration lenses for HCPV systems.

PubMed

Shen, S C; Chang, S J; Yeh, C Y; Teng, P C

2013-11-04

In this paper, total internal reflection-refraction (TIR-R) concentration (U-TIR-R-C) lens module were designed for uniformity using the energy configuration method to eliminate hot spots on the surface of solar cell and increase conversion efficiency. The design of most current solar concentrators emphasizes the high-power concentration of solar energy, however neglects the conversion inefficiency resulting from hot spots generated by uneven distributions of solar energy concentrated on solar cells. The energy configuration method proposed in this study employs the concept of ray tracing to uniformly distribute solar energy to solar cells through a U-TIR-R-C lens module. The U-TIR-R-C lens module adopted in this study possessed a 76-mm diameter, a 41-mm thickness, concentration ratio of 1134 Suns, 82.6% optical efficiency, and 94.7% uniformity. The experiments demonstrated that the U-TIR-R-C lens module reduced the core temperature of the solar cell from 108 °C to 69 °C and the overall temperature difference from 45 °C to 10 °C, and effectively relative increased the conversion efficiency by approximately 3.8%. Therefore, the U-TIR-R-C lens module designed can effectively concentrate a large area of sunlight onto a small solar cell, and the concentrated solar energy can be evenly distributed in the solar cell to achieve uniform irradiance and effectively eliminate hot spots.

Discovery of Cellulose Surface Layer Conformation by Nonlinear Vibrational Spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Libing; Fu, Li; Wang, Hong-fei

2017-03-14

Significant questions remain with respect to the structure and polymorphs of cellulose. These include the cellulose surface layers and the bulk crystalline core as well as the conformational differences. The Total Internal Reflection Sum Frequency Generation Vibrational Spectroscopy (TIR-SFG-VS) combined with the conventional SFG-VS (non-TIR) can help to resolve these questions by selectively characterizing the molecular structures of surface layers and the crystalline core of cellulose. From the SFG spectra in the C-H and O-H regions, we found that the surface layers of Avicel are essentially amorphous; while the surface layers of Iβ cellulose are crystalline but with different structuralmore » and spectroscopic signatures than that of its crystalline core. This work demonstrates the capacity of TIR and Non-TIR SFG-VS tools in selectively studying the structures and polymorphs of cellulose. In addition, these results also suggest that the assignments of major vibrational peaks for cellulose need to be further determined.« less

NGEE Arctic TIR and Digital Photos, Drained Thaw Lake Basin, Barrow, Alaska, July 2015

DOE Data Explorer

Shawn Serbin; Wil Lieberman-Cribbin; Kim Ely; Alistair Rogers

2016-11-01

FLIR thermal infrared (TIR), digital camera photos, and plot notes across the Barrow, Alaska DTLB site. Data were collected together with measurements of canopy spectral reflectance (see associated metadata record (NGEE Arctic HR1024i Canopy Spectral Reflectance, Drained Thaw Lake Basin, Barrow, Alaska, July 2015 ). Data contained within this archive include exported FLIR images (analyzed with FLIR-Tools), digital photos, TIR report, and sample notes. Further TIR image analysis can be conducted in FLIR-Tools.

Evanescent field microscopy techniques for studying dynamics at the surface of living cells

NASA Astrophysics Data System (ADS)

Sund, Susan E.

This thesis presents two distinct optical microscopy techniques for applications in cell biophysics: (a)the extension to living cells of an established technique, total internal reflection/fluorescence recovery after photobleaching (TIR/FRAP) for the first time in imaging mode; and (b)the novel development of polarized total internal reflection fluorescence (p- TIRF) to study membrane orientation in living cells. Although reversible chemistry is crucial to dynamical processes in living cells, relatively little is known about the relevant chemical kinetic rates in vivo. TIR/FRAP, an established technique which can measure reversible biomolecular kinetic rates at surfaces, is extended here to measure kinetic parameters of microinjected rhodamine actin at the cytofacial surface of the plasma membrane of living cultured smooth muscle cells. For the first time, spatial imaging (with a CCD camera) is used in conjunction with TIR/FRAP. TIR/FRAP imaging allows production of spatially resolved images of kinetic data, and calculation of correlation distances, cell-wide gradients, and kinetic parameter dependence on initial fluorescence intensity. In living cells, membrane curvature occurs both in easily imaged large scale morphological features, and also in less visualizable submicroscopic regions of activity such as endocytosis, exocytosis, and cell surface ruffling. A fluorescence microscopic method, p-TIRF, is introduced here to visualize such regions. The method is based on fluorescence of the oriented membrane probe diI- C18-(3) (diI) excited by evanescent field light polarized either perpendicular or parallel to the plane of the substrate coverslip. The excitation efficiency from each polarization depends on the membrane orientation, and thus the ratio of the observed fluorescence excited by these two polarizations vividly shows regions of microscopic and submicroscopic curvature of the membrane. A theoretical background of the technique and experimental verifications are presented in samples of protein solutions, model lipid bilayers, and living cells. Sequential digital images of the polarized TIR fluorescence ratios show spatially-resolved time- course maps of membrane orientations on diI labeled macrophages from which low visibility membrane structures can be identified and quantified. The TIR images are sharpened and contrast-enhanced by deconvoluting them with an experimentally-measured point spread function.

The use of 2D and 3D WA-BPM models to analyze total-internal-reflection-based integrated optical switches

NASA Astrophysics Data System (ADS)

Wang, Pengfei; Brambilla, Gilberto; Semenova, Yuliya; Wu, Qiang; Zheng, Jie; Farrell, Gerald

2011-08-01

The well known beam propagation method (BPM) has become one of the most useful, robust and effective numerical simulation tools for the investigation of guided-wave optics, for example integrated optical waveguides and fiber optic devices. In this paper we examine the use of the 2D and 3D wide angle-beam propagation method (WA-BPM) combined with the well known perfectly matched layer (PML) boundary conditions as a tool to analyze TIR based optical switches, in particular the relationship between light propagation and the geometrical parameters of a TIR based optical switch. To analyze the influence of the length and the width of the region in which the refractive index can be externally controlled, the 3D structure of a 2x2 TIR optical switch is firstly considered in 2D using the effective index method (EIM). Then the influence of the etching depth and the tilt angle of the reflection facet on the switch performance are investigated with a 3D model.

Design of an efficient Fresnel-type lens utilizing double total internal reflection for solar energy collection.

PubMed

Wallhead, Ian; Jiménez, Teresa Molina; Ortiz, Jose Vicente García; Toledo, Ignacio Gonzalez; Toledo, Cristóbal Gonzalez

2012-11-05

A novel of Fresnel-type lens for use as a solar collector has been designed which utilizes double total internal reflection (D-TIR) to optimize collection efficiency for high numerical aperture lenses (in the region of 0.3 to 0.6 NA). Results show that, depending on the numerical aperture and the size of the receiver, a collection efficiency theoretical improvement on the order of 20% can be expected with this new design compared with that of a conventional Fresnel lens.

Design considerations for quasi-phase-matching in doubly resonant lithium niobate hexagonal micro-resonators

NASA Astrophysics Data System (ADS)

Sono, Tleyane J.; Riziotis, Christos; Mailis, Sakellaris; Eason, Robert W.

2017-09-01

Fabrication capabilities of high optical quality hexagonal superstructures by chemical etching of inverted ferroelectric domains in lithium niobate platform suggests a route for efficient implementation of compact hexagonal microcavities. Such nonlinear optical hexagonal micro-resonators are proposed as a platform for second harmonic generation (SHG) by the combined mechanisms of total internal reflection (TIR) and quasi-phase-matching (QPM). The proposed scheme for SHG via TIR-QPM in a hexagonal microcavity can improve the efficiency and also the compactness of SHG devices compared to traditional linear-type based devices. A simple theoretical model based on six-bounce trajectory and phase matching conditions was capable for obtaining the optimal cavity size. Furthermore numerical simulation results based on finite difference time domain beam propagation method analysis confirmed the solutions obtained by demonstrating resonant operation of the microcavity for the second harmonic wave produced by TIR-QPM. Design aspects, optimization issues and characteristics of the proposed nonlinear device are presented.

Composite Yb:YAG/SiC-prism thin disk laser.

PubMed

Newburgh, G A; Michael, A; Dubinskii, M

2010-08-02

We report the first demonstration of a Yb:YAG thin disk laser wherein the gain medium is intracavity face-cooled through bonding to an optical quality SiC prism. Due to the particular design of the composite bonded Yb:YAG/SiC-prism gain element, the laser beam impinges on all refractive index interfaces inside the laser cavity at Brewster's angles. The laser beam undergoes total internal reflection (TIR) at the bottom of the Yb(10%):YAG thin disk layer in a V-bounce cavity configuration. Through the use of TIR and Brewster's angles, no optical coatings, either anti-reflective (AR) or highly reflective (HR), are required inside the laser cavity. In this first demonstration, the 936.5-nm diode pumped laser performed with approximately 38% slope efficiency at 12 W of quasi-CW (Q-CW) output power at 1030 nm with a beam quality measured at M(2) = 1.5. This demonstration opens up a viable path toward novel thin disk laser designs with efficient double-sided room-temperature heatsinking via materials with the thermal conductivity of copper on both sides of the disk.

Fingerprint enhancement using a multispectral sensor

NASA Astrophysics Data System (ADS)

Rowe, Robert K.; Nixon, Kristin A.

2005-03-01

The level of performance of a biometric fingerprint sensor is critically dependent on the quality of the fingerprint images. One of the most common types of optical fingerprint sensors relies on the phenomenon of total internal reflectance (TIR) to generate an image. Under ideal conditions, a TIR fingerprint sensor can produce high-contrast fingerprint images with excellent feature definition. However, images produced by the same sensor under conditions that include dry skin, dirt on the skin, and marginal contact between the finger and the sensor, are likely to be severely degraded. This paper discusses the use of multispectral sensing as a means to collect additional images with new information about the fingerprint that can significantly augment the system performance under both normal and adverse sample conditions. In the context of this paper, "multispectral sensing" is used to broadly denote a collection of images taken under different illumination conditions: different polarizations, different illumination/detection configurations, as well as different wavelength illumination. Results from three small studies using an early-stage prototype of the multispectral-TIR (MTIR) sensor are presented along with results from the corresponding TIR data. The first experiment produced data from 9 people, 4 fingers from each person and 3 measurements per finger under "normal" conditions. The second experiment provided results from a study performed to test the relative performance of TIR and MTIR images when taken under extreme dry and dirty conditions. The third experiment examined the case where the area of contact between the finger and sensor is greatly reduced.

Thermal infrared reflectance and emission spectroscopy of quartzofeldspathic glasses

USGS Publications Warehouse

Byrnes, J.M.; Ramsey, M.S.; King, P.L.; Lee, R.J.

2007-01-01

This investigation seeks to better understand the thermal infrared (TIR) spectral characteristics of naturally-occurring amorphous materials through laboratory synthesis and analysis of glasses. Because spectra of glass phases differ markedly from their mineral counterparts, examination of glasses is important to accurately determine the composition of amorphous surface materials using remote sensing datasets. Quantitatively characterizing TIR (5-25 ??m) spectral changes that accompany structural changes between glasses and mineral crystals provides the means to understand natural glasses on Earth and Mars. A suite of glasses with compositions analogous to common terrestrial volcanic glasses was created and analyzed using TIR reflectance and emission techniques. Documented spectral characteristics provide a basis for comparison with TIR spectra of other amorphous materials (glasses, clays, etc.). Our results provide the means to better detect and characterize glasses associated with terrestrial volcanoes, as well as contribute toward understanding the nature of amorphous silicates detected on Mars. Copyright 2007 by the American Geophysical Union.

Impact of spatial resolution on cirrus infrared satellite retrievals in the presence of cloud heterogeneity

NASA Astrophysics Data System (ADS)

Fauchez, T.; Platnick, S. E.; Meyer, K.; Zhang, Z.; Cornet, C.; Szczap, F.; Dubuisson, P.

2015-12-01

Cirrus clouds are an important part of the Earth radiation budget but an accurate assessment of their role remains highly uncertain. Cirrus optical properties such as Cloud Optical Thickness (COT) and ice crystal effective particle size are often retrieved with a combination of Visible/Near InfraRed (VNIR) and ShortWave-InfraRed (SWIR) reflectance channels. Alternatively, Thermal InfraRed (TIR) techniques, such as the Split Window Technique (SWT), have demonstrated better accuracy for thin cirrus effective radius retrievals with small effective radii. However, current global operational algorithms for both retrieval methods assume that cloudy pixels are horizontally homogeneous (Plane Parallel Approximation (PPA)) and independent (Independent Pixel Approximation (IPA)). The impact of these approximations on ice cloud retrievals needs to be understood and, as far as possible, corrected. Horizontal heterogeneity effects in the TIR spectrum are mainly dominated by the PPA bias that primarily depends on the COT subpixel heterogeneity; for solar reflectance channels, in addition to the PPA bias, the IPA can lead to significant retrieval errors due to a significant photon horizontal transport between cloudy columns, as well as brightening and shadowing effects that are more difficult to quantify. Furthermore TIR retrievals techniques have demonstrated better retrieval accuracy for thin cirrus having small effective radii over solar reflectance techniques. The TIR range is thus particularly relevant in order to characterize, as accurately as possible, thin cirrus clouds. Heterogeneity effects in the TIR are evaluated as a function of spatial resolution in order to estimate the optimal spatial resolution for TIR retrieval applications. These investigations are performed using a cirrus 3D cloud generator (3DCloud), a 3D radiative transfer code (3DMCPOL), and two retrieval algorithms, namely the operational MODIS retrieval algorithm (MOD06) and a research-level SWT algorithm.

Distinct modes of perimembrane TRP channel turnover revealed by TIR-FRAP.

PubMed

Ghosh, Debapriya; Segal, Andrei; Voets, Thomas

2014-11-19

Transient Receptor Potential (TRP) channels form a broadly expressed and functionally diverse family of cation channels involved in various (patho)physiological processes. Whereas the mechanisms that control opening of TRP channels have been extensively studied, little is known about the transport processes of TRP channels to and within the plasma membrane. Here we used Total Internal Reflection--Fluorescence Recovery after Photobleaching (TIR-FRAP) to selectively visualize and bleach the fluorescently labeled TRP channels TRPV2 and TRPM4 in close proximity of the glass-plasma membrane interface, allowing detailed analysis of their perimembrane dynamics. We show that recovery of TRPM4 occurs via 200-nm diameter transport vesicles, and demonstrate the full fusion of such vesicles with the plasma membrane. In contrast, TRPV2 recovery proceeded mainly via lateral diffusion from non-bleached areas of the plasma membrane. Analysis of the two-dimensional channel diffusion kinetics yielded 2D diffusion coefficients ranging between 0.1 and 0.3 μm(2)/s, suggesting that these TRP channels move relatively unrestricted within the plasma membrane. These data demonstrate distinct modes of TRP channel turnover at the plasma membrane and illustrate the usefulness of TIR-FRAP to monitor these processes with high resolution.

Comparison of preliminary results from Airborne Aster Simulator (AAS) with TIMS data

NASA Technical Reports Server (NTRS)

Kannari, Yoshiaki; Mills, Franklin; Watanabe, Hiroshi; Ezaka, Teruya; Narita, Tatsuhiko; Chang, Sheng-Huei

1992-01-01

The Japanese Advanced Spaceborne Thermal Emission and Reflection radiometer (ASTER), being developed for a NASA EOS-A satellite, will have 3 VNIR, 6 SWIR, and 5 TIR (8-12 micron) bands. An Airborne ASTER Simulator (AAS) was developed for Japan Resources Observation System Organization (JAROS) by the Geophysical Environmental Research Group (GER) Corp. to research surface temperature and emission features in the MWIR/TIR, to simulate ASTER's TIR bands, and to study further possibility of MWIR/TIR bands. ASTER Simulator has 1 VNIR, 3 MWIR (3-5 microns), and 20 (currently 24) TIR bands. Data was collected over 3 sites - Cuprite, Nevada; Long Valley/Mono Lake, California; and Death Valley, California - with simultaneous ground truth measurements. Preliminary data collected by AAS for Cuprite, Nevada is presented and AAS data is compared with Thermal Infrared Multispectral Scanner (TIMS) data.

Preflight and in-flight calibration plan for ASTER

USGS Publications Warehouse

Ono, A.; Sakuma, F.; Arai, K.; Yamaguchi, Y.; Fujisada, H.; Slater, P.N.; Thome, K.J.; Palluconi, Frank Don; Kieffer, H.H.

1996-01-01

Preflight and in-flight radiometric calibration plans are described for the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) that is a multispectral optical imager of high spatial resolution. It is designed for the remote sensing from orbit of land surfaces and clouds, and is expected to be launched in 1998 on NASA's EOS AM-1 spacecraft. ASTER acquires images in three separate spectral regions, the visible and near-infrared (VNIR), the shortwave infrared (SWIR), and the thermal infrared (TIR) with three imaging radiometer subsystems. The absolute radiometric accuracy is required to be better than 4% for VNIR and SWIR radiance measurements and 1 to 3 K, depending on the temperature regions from 200 to 370 K, for TIR temperature measurements. A reference beam is introduced at the entrance pupil of each imaging radiometer to provide the in-flight calibration Thus, the ASTER instrument includes internal onboard calibration units that comprise incandescent lamps for the VNIR and SWIR and a blackbody radiator for the TIR as reference sources. The calibration reliability of the VNIR and SWIR is enhanced by a dual system of onboard calibration units as well as by high-stability halogen lamps. A ground calibration system of spectral radiances traceable to fixed-point blackbodies is used for the preflight VNIR and SWIR calibration. Because of the possibility of nonuniform contamination effects on the partial-aperture onboard calibration, it is desirable to check their results with respect to other methods. Reflectance- and radiance-based vicarious methods have been developed for this purpose. These, and methods involving in-flight cross-calibration with other sensors are also described.

Unmanned Ground Vehicle Perception Using Thermal Infrared Cameras

NASA Technical Reports Server (NTRS)

Rankin, Arturo; Huertas, Andres; Matthies, Larry; Bajracharya, Max; Assad, Christopher; Brennan, Shane; Bellutta, Paolo; Sherwin, Gary W.

2011-01-01

The ability to perform off-road autonomous navigation at any time of day or night is a requirement for some unmanned ground vehicle (UGV) programs. Because there are times when it is desirable for military UGVs to operate without emitting strong, detectable electromagnetic signals, a passive only terrain perception mode of operation is also often a requirement. Thermal infrared (TIR) cameras can be used to provide day and night passive terrain perception. TIR cameras have a detector sensitive to either mid-wave infrared (MWIR) radiation (3-5?m) or long-wave infrared (LWIR) radiation (8-12?m). With the recent emergence of high-quality uncooled LWIR cameras, TIR cameras have become viable passive perception options for some UGV programs. The Jet Propulsion Laboratory (JPL) has used a stereo pair of TIR cameras under several UGV programs to perform stereo ranging, terrain mapping, tree-trunk detection, pedestrian detection, negative obstacle detection, and water detection based on object reflections. In addition, we have evaluated stereo range data at a variety of UGV speeds, evaluated dual-band TIR classification of soil, vegetation, and rock terrain types, analyzed 24 hour water and 12 hour mud TIR imagery, and analyzed TIR imagery for hazard detection through smoke. Since TIR cameras do not currently provide the resolution available from megapixel color cameras, a UGV's daytime safe speed is often reduced when using TIR instead of color cameras. In this paper, we summarize the UGV terrain perception work JPL has performed with TIR cameras over the last decade and describe a calibration target developed by General Dynamics Robotic Systems (GDRS) for TIR cameras and other sensors.

Auto-calibrated scanning-angle prism-type total internal reflection microscopy for nanometer-precision axial position determination and optional variable-illumination-depth pseudo total internal reflection microscopy

DOEpatents

Fang, Ning; Sun, Wei

2015-04-21

A method, apparatus, and system for improved VA-TIRFM microscopy. The method comprises automatically controlled calibration of one or more laser sources by precise control of presentation of each laser relative a sample for small incremental changes of incident angle over a range of critical TIR angles. The calibration then allows precise scanning of the sample for any of those calibrated angles for higher and more accurate resolution, and better reconstruction of the scans for super resolution reconstruction of the sample. Optionally the system can be controlled for incident angles of the excitation laser at sub-critical angles for pseudo TIRFM. Optionally both above-critical angle and sub critical angle measurements can be accomplished with the same system.

Cirrus Heterogeneity Effects on Cloud Optical Properties Retrieved with an Optimal Estimation Method from MODIS VIS to TIR Channels.

NASA Technical Reports Server (NTRS)

Fauchez, T.; Platnick, S.; Meyer, K.; Sourdeval, O.; Cornet, C.; Zhang, Z.; Szczap, F.

2016-01-01

This study presents preliminary results on the effect of cirrus heterogeneities on top-of-atmosphere (TOA) simulated radiances or reflectances for MODIS channels centered at 0.86, 2.21, 8.56, 11.01 and 12.03 micrometers , and on cloud optical properties retrieved with a research-level optimal estimation method (OEM). Synthetic cirrus cloud fields are generated using a 3D cloud generator (3DCLOUD) and radiances/reflectances are simulated using a 3D radiative transfer code (3DMCPOL). We find significant differences between the heterogeneity effects on either visible and near-infrared (VNIR) or thermal infrared (TIR) radiances. However, when both wavelength ranges are combined, heterogeneity effects are dominated by the VNIR horizontal radiative transport effect. As a result, small optical thicknesses are overestimated and large ones are underestimated. Retrieved effective diameter are found to be slightly affected, contrarily to retrievals using TIR channels only.

Polymer diffusion in the interphase between surface and solution.

PubMed

Weger, Lukas; Weidmann, Monika; Ali, Wael; Hildebrandt, Marcus; Gutmann, Jochen Stefan; Hoffmann-Jacobsen, Kerstin

2018-05-22

Total internal reflection fluorescence correlation spectroscopy (TIR-FCS) is applied to study the self-diffusion of polyethylene glycol solutions in the presence of weakly attractive interfaces. Glass coverslips modified with aminopropyl- and propyl-terminated silanes are used to study the influence of solid surfaces on polymer diffusion. A model of three phases of polymer diffusion allows to describe the experimental fluorescence autocorrelation functions. Besides the two-dimensional diffusion of adsorbed polymer on the substrate and three-dimensional free diffusion in bulk solution, a third diffusion time scale is observed with intermediate diffusion times. This retarded three-dimensional diffusion in solution is assigned to long range effects of solid surfaces on diffusional dynamics of polymers. The respective diffusion constants show Rouse scaling (D~N -1 ) indicating a screening of hydrodynamic interactions by the presence of the surface. Hence, the presented TIR-FCS method proves to be a valuable tool to investigate the effect of surfaces on polymer diffusion beyond the first adsorbed polymer layer on the 100 nm length scale.

Detection of Myoglobin with an Open-Cavity-Based Label-Free Photonic Crystal Biosensor.

PubMed

Zhang, Bailin; Tamez-Vela, Juan Manuel; Solis, Steven; Bustamante, Gilbert; Peterson, Ralph; Rahman, Shafiqur; Morales, Andres; Tang, Liang; Ye, Jing Yong

2013-01-01

The label-free detection of one of the cardiac biomarkers, myoglobin, using a photonic-crystal-based biosensor in a total-internal-reflection configuration (PC-TIR) is presented in this paper. The PC-TIR sensor possesses a unique open optical microcavity that allows for several key advantages in biomolecular assays. In contrast to a conventional closed microcavity, the open configuration allows easy functionalization of the sensing surface for rapid biomolecular binding assays. Moreover, the properties of PC structures make it easy to be designed and engineered for operating at any optical wavelength. Through fine design of the photonic crystal structure, biochemical modification of the sensor surface, and integration with a microfluidic system, we have demonstrated that the detection sensitivity of the sensor for myoglobin has reached the clinically significant concentration range, enabling potential usage of this biosensor for diagnosis of acute myocardial infarction. The real-time response of the sensor to the myoglobin binding may potentially provide point-of-care monitoring of patients and treatment effects.

19 CFR 115.4 - Conflicting provisions.

Code of Federal Regulations, 2012 CFR

2012-04-01

... TREASURY CARGO CONTAINER AND ROAD VEHICLE CERTIFICATION PURSUANT TO INTERNATIONAL CUSTOMS CONVENTIONS General § 115.4 Conflicting provisions. The provisions of the most recent TIR/Container Convention shall apply in the event of conflict between it and an earlier TIR/Container Convention covered by these...

19 CFR 115.4 - Conflicting provisions.

Code of Federal Regulations, 2010 CFR

2010-04-01

... TREASURY CARGO CONTAINER AND ROAD VEHICLE CERTIFICATION PURSUANT TO INTERNATIONAL CUSTOMS CONVENTIONS General § 115.4 Conflicting provisions. The provisions of the most recent TIR/Container Convention shall apply in the event of conflict between it and an earlier TIR/Container Convention covered by these...

19 CFR 115.4 - Conflicting provisions.

Code of Federal Regulations, 2011 CFR

2011-04-01

... TREASURY CARGO CONTAINER AND ROAD VEHICLE CERTIFICATION PURSUANT TO INTERNATIONAL CUSTOMS CONVENTIONS General § 115.4 Conflicting provisions. The provisions of the most recent TIR/Container Convention shall apply in the event of conflict between it and an earlier TIR/Container Convention covered by these...

19 CFR 115.4 - Conflicting provisions.

Code of Federal Regulations, 2014 CFR

2014-04-01

... TREASURY CARGO CONTAINER AND ROAD VEHICLE CERTIFICATION PURSUANT TO INTERNATIONAL CUSTOMS CONVENTIONS General § 115.4 Conflicting provisions. The provisions of the most recent TIR/Container Convention shall apply in the event of conflict between it and an earlier TIR/Container Convention covered by these...

19 CFR 115.4 - Conflicting provisions.

Code of Federal Regulations, 2013 CFR

2013-04-01

... TREASURY CARGO CONTAINER AND ROAD VEHICLE CERTIFICATION PURSUANT TO INTERNATIONAL CUSTOMS CONVENTIONS General § 115.4 Conflicting provisions. The provisions of the most recent TIR/Container Convention shall apply in the event of conflict between it and an earlier TIR/Container Convention covered by these...

Quantification of bovine immunoglobulin G using transmission and attenuated total reflectance infrared spectroscopy.

PubMed

Elsohaby, Ibrahim; McClure, J Trenton; Riley, Christopher B; Shaw, R Anthony; Keefe, Gregory P

2016-01-01

In this study, we evaluated and compared the performance of transmission and attenuated total reflectance (ATR) infrared (IR) spectroscopic methods (in combination with quantification algorithms previously developed using partial least squares regression) for the rapid measurement of bovine serum immunoglobulin G (IgG) concentration, and detection of failure of transfer of passive immunity (FTPI) in dairy calves. Serum samples (n = 200) were collected from Holstein calves 1-11 days of age. Serum IgG concentrations were measured by the reference method of radial immunodiffusion (RID) assay, transmission IR (TIR) and ATR-IR spectroscopy-based assays. The mean IgG concentration measured by RID was 17.22 g/L (SD ±9.60). The mean IgG concentrations predicted by TIR and ATR-IR spectroscopy methods were 15.60 g/L (SD ±8.15) and 15.94 g/L (SD ±8.66), respectively. RID IgG concentrations were positively correlated with IgG levels predicted by TIR (r = 0.94) and ATR-IR (r = 0.92). The correlation between 2 IR spectroscopic methods was 0.94. Using an IgG concentration <10 g/L as the cut-point for FTPI cases, the overall agreement between TIR and ATR-IR methods was 94%, with a corresponding kappa value of 0.84. The sensitivity, specificity, positive predictive value, negative predictive value, and accuracy for identifying FTPI by TIR were 0.87, 0.97, 0.91, 0.95, and 0.94, respectively. Corresponding values for ATR-IR were 0.87, 0.95, 0.86, 0.95, and 0.93, respectively. Both TIR and ATR-IR spectroscopic approaches can be used for rapid quantification of IgG level in neonatal bovine serum and for diagnosis of FTPI in dairy calves. © 2015 The Author(s).

Study on acoustic-electric-heat effect of coal and rock failure processes under uniaxial compression

NASA Astrophysics Data System (ADS)

Li, Zhong-Hui; Lou, Quan; Wang, En-Yuan; Liu, Shuai-Jie; Niu, Yue

2018-02-01

In recent years, coal and rock dynamic disasters are becoming more and more severe, which seriously threatens the safety of coal mining. It is necessary to carry out an depth study on the various geophysical precursor information in the process of coal and rock failure. In this paper, with the established acoustic-electric-heat multi-parameter experimental system of coal and rock, the acoustic emission (AE), surface potential and thermal infrared radiation (TIR) signals were tested and analyzed in the failure processes of coal and rock under the uniaxial compression. The results show that: (1) AE, surface potential and TIR have different response characteristics to the failure process of the sample. AE and surface potential signals have the obvious responses to the occurrence, extension and coalescence of cracks. The abnormal TIR signals occur at the peak and valley points of the TIR temperature curve, and are coincident with the abnormities of AE and surface potential to a certain extent. (2) The damage precursor points and the critical precursor points were defined to analyze the precursor characteristics reflected by AE, surface potential and TIR signals, and the different signals have the different precursor characteristics. (3) The increment of the maximum TIR temperature after the main rupture of the sample is significantly higher than that of the average TIR temperature. Compared with the maximum TIR temperature, the average TIR temperature has significant hysteresis in reaching the first peak value after the main rapture. (4) The TIR temperature contour plots at different times well show the evolution process of the surface temperature field of the sample, and indicate that the sample failure originates from the local destruction.

Observing of tree trunks and other cylindrical objects using GPR

NASA Astrophysics Data System (ADS)

Jezova, Jana; Lambot, Sebastien

2016-04-01

Trees are a part of our everyday life, hence it is important to prevent their collapse to protect people and urban infrastructures. It is also important to characterize tree wood properties for usages in construction. In order to investigate internal parts of tree trunks non-invasively, ground-penetrating radar (GPR), or in this case, ultra-wideband microwave radar as a general tool, appears to be a very promising technology. Nevertheless, tree trunk tomography using microwave radar is a complicated task due to the circular shape of the trunk and the very complex (heterogeneous and anisotropic) internal structures of the trunk. Microwave sensing of tree trunks is also complicated due to the electromagnetic properties of living wood, which strongly depend on water content, density and temperature of wood. The objective of this study is to describe tree trunk radar cross sections including specific features originating from the particular circumferential data acquisition geometry. In that respect, three experiments were performed: (1) numerical simulations using a finite-difference time-domain software, namely, gprMax 2D, (2) measurements on a simplified laboratory trunk model including plastic and cardboard pipes, sand and air, and (3) measurements over a real tree trunk. The analysis was further deepened by considering: (1) common zero-offset reflection imaging, (2) imaging with a planar perfect electrical conductor (PEC) at the opposite side of the trunk, and (3) imaging with a PEC arc at the opposite side of the trunk. Furthermore, the shape of the reflection curve of a cylindrical target was analytically derived based on the straight-ray propagation approximation. Subsequently, the total internal reflection (TIR) phenomenon occurring in cylindrical objects was observed and analytically described. Both the straight-ray reflection curve and TIR were well observed on the simulated and laboratory radar data. A comparison between all experiments and radar configurations is presented. Future research will focus on the design of an adapted radar antenna for that application to optimize living tree trunk tomography. This research is funded by the Fonds de la Recherche Scientifique (FNRS, Belgium) and benefits from networking activities carried out within the EU COST Action TU1208 "Civil Engineering Applications of Ground Penetrating Radar".

Evaluation of a novel label-free photonic-crystal biosensor imaging system for the detection of prostate cancer cells

NASA Astrophysics Data System (ADS)

DeLuna, Frank; Ding, XiaoFie; Sun, Lu-Zhe; Ye, Jing Yong

2017-02-01

Biomarker screening for prostate-specific antigen (PSA) is the current clinical standard for detection of prostate cancer. However this method has shown many limitations, mainly in its specificity, which can lead to a high false positive rate. Thus, there is a growing need in developing a more specific detection system for prostate cancer. Using a Photonic- Crystal-based biosensor in a Total-Internal-Reflection (PC-TIR) configuration, we demonstrate the use of refractive index (RI) to accomplish label-free detection of prostate cancer cells against non-cancerous prostate epithelial cells. The PC-TIR biosensor possesses an open microcavity, which in contrast to traditional closed microcavities, allows for easier access of analyte molecules or cells to interact with its sensing surface. In this study, an imaging system was designed using the PC-TIR biosensor to quantify cell RI as the contrast parameter for prostate cancer detection. Non-cancerous BPH-1 prostate epithelial cells and prostate cancer PC-3 cells were placed on a single biosensor and measured concurrently. Recorded image data was then analyzed through a home-built MatLab program. Results demonstrate that RI is a suitable variable for differentiation between prostate cancer cells and non-cancerous prostate epithelial cells. Our study shows clinical potential in utilizing RI test for the detection of prostate cancer.

Invited Article: An active terahertz polarization converter employing vanadium dioxide and a metal wire grating in total internal reflection geometry

NASA Astrophysics Data System (ADS)

Liu, Xudong; Chen, Xuequan; Parrott, Edward P. J.; Han, Chunrui; Humbert, Georges; Crunteanu, Aurelian; Pickwell-MacPherson, Emma

2018-05-01

Active broadband terahertz (THz) polarization manipulation devices are challenging to realize, but also of great demand in broadband terahertz systems. Vanadium dioxide (VO2) shows a promising phase transition for active control of THz waves and provides broadband polarization characteristics when integrated within grating-type structures. We creatively combine a VO2-based grating structure with a total internal reflection (TIR) geometry providing a novel interaction mechanism between the electromagnetic waves and the device, to realize a powerful active broadband THz polarization-controlling device. The device is based on a Si-substrate coated with a VO2 layer and a metal grating structure on top, attached to a prism for generating the TIR condition on the Si-VO2-grating interface. The grating is connected to electrodes for electrically switching the VO2 between its insulating and conducting phases. By properly selecting the incident angle of the THz waves, the grating direction, and the incident polarization state, we first achieved a broadband intensity modulator under a fused silica prism with an average modulation depth of 99.75% in the 0.2-1.1 THz region. Additionally, we realized an active ultra-broadband quarter-wave converter under a Si prism that can be switched between a 45° linear rotator and a quarter wave converter in the 0.8-1.5 THz region. This is the first demonstration of an active quarter-wave converter with ultra-broad bandwidth performance. Our work shows a highly flexible and multifunctional polarization-controlling device for broadband THz applications.

Land Surface Temperature Measurements from EOS MODIS Data

NASA Technical Reports Server (NTRS)

Wan, Zhengming

1997-01-01

We made modifications to the linear kernel bidirectional reflectance distribution function (BRDF) models from Roujean et al. and Wanner et al. that extend the spectral range into the thermal infrared (TIR). With these TIR BRDF models and the IGBP land-cover product, we developed a classification-based emissivity database for the EOS/MODIS land-surface temperature (LST) algorithm and used it in version V2.0 of the MODIS LST code. Two V2.0 LST codes have been delivered to the MODIS SDST, one for the daily L2 and L3 LST products, and another for the 8-day 1km L3 LST product. New TIR thermometers (broadband radiometer with a filter in the 10-13 micron window) and an IR camera have been purchased in order to reduce the uncertainty in LST field measurements due to the temporal and spatial variations in LST. New improvements have been made to the existing TIR spectrometer in order to increase its accuracy to 0.2 C that will be required in the vicarious calibration of the MODIS TIR bands.

Land surface temperature measurements from EOS MODIS data

NASA Technical Reports Server (NTRS)

Wan, Zhengming

1995-01-01

A significant progress has been made in TIR instrumentation which is required to establish the spectral BRDF/emissivity knowledge base of land-surface materials and to validate the land-surface temperature (LST) algorithms. The SIBRE (spectral Infrared Bidirectional Reflectance and Emissivity) system and a TIR system for measuring spectral directional-hemispherical emissivity have been completed and tested successfully. Optical properties and performance features of key components (including spectrometer, and TIR source) of these systems have been characterized by integrated use of local standards (blackbody and reference plates). The stabilization of the spectrometer performance was improved by a custom designed and built liquid cooling system. Methods and procedures for measuring spectral TIR BRDF and directional-hemispheric emissivity with these two systems have been verified in sample measurements. These TIR instruments have been used in the laboratory and the field, giving very promising results. The measured spectral emissivities of water surface are very close to the calculated values based on well established water refractive index values in published papers. Preliminary results show that the TIR instruments can be used for validation of the MODIS LST algorithm in homogeneous test sites. The beta-3 version of the MODIS LST software is being prepared for its delivery scheduled in the early second half of this year.

Structure and Dynamics of Interfaces: Drops and Films

NASA Technical Reports Server (NTRS)

Mann, J. Adin, Jr.; Mann, Elizabeth K.; Meyer, William V.; Neumann, A. Wilhelm; Tavana, Hossein

2015-01-01

We aim to acquire measurements of the structure and dynamics of certain liquid-fluid interfaces using an ensemble of techniques in collaboration: (1) Total internal reflection (TIR) Surface light scattering spectroscopy (SLSS), (2) Brewster angle microscopy (BAM), and (3) Drop-shape analysis. SLSS and BAM can be done on a shared interfacial footprint. Results using a 50-50 mixture of pentane-isohexane, which extends the range of NASA's Confined Vapor Bubble (CVB) experiment, yield surface tension results that differ from the expected Langmuir Fit. These results were confirmed using both the SLSS and drop-shape analysis approaches.

Total Internal Reflection Accounts for the Bright Color of the Saharan Silver Ant

PubMed Central

Aron, Serge

2016-01-01

The Saharan silver ant Cataglyphis bombycina is one of the terrestrial living organisms best adapted to tolerate high temperatures. It has recently been shown that the hairs covering the ant’s dorsal body part are responsible for its silvery appearance. The hairs have a triangular cross-section with two corrugated surfaces allowing a high optical reflection in the visible and near-infrared (NIR) range of the spectrum while maximizing heat emissivity in the mid-infrared (MIR). Those two effects account for remarkable thermoregulatory properties, enabling the ant to maintain a lower thermal steady state and to cope with the high temperature of its natural habitat. In this paper, we further investigate how geometrical optical and high reflection properties account for the bright silver color of C. bombycina. Using optical ray-tracing models and attenuated total reflection (ATR) experiments, we show that, for a large range of incidence angles, total internal reflection (TIR) conditions are satisfied on the basal face of each hair for light entering and exiting through its upper faces. The reflection properties of the hairs are further enhanced by the presence of the corrugated surface, giving them an almost total specular reflectance for most incidence angles. We also show that hairs provide an almost 10-fold increase in light reflection, and we confirm experimentally that they are responsible for a lower internal body temperature under incident sunlight. Overall, this study improves our understanding of the optical mechanisms responsible for the silver color of C. bombycina and the remarkable thermoregulatory properties of the hair coat covering the ant’s body. PMID:27073923

An Improved Prism for Use in Laser Resonators

DTIC Science & Technology

1981-08-01

reflection (TIR) prisms , will be shown to give significant advantages over the use of Porro prisms when used in polarisation coupled laser resonators . 2... resonator as shown in figure 2. As in the case of the crossed- Porro laser an in-line or folded configuration can be used. The compound TIR prism at the...thrashold, etc, rather than on refractive index, as in the case of Porro prisms . In conventional Q-switched Nd:YAG resonators , replacement of the 100

Thermal Infrared Hot Spot and Dependence on Canopy Geometry

NASA Technical Reports Server (NTRS)

Smith, James A.; Ballard, Jerrell R., Jr.; Smith, David E. (Technical Monitor)

2001-01-01

We perform theoretical calculations of the canopy thermal infrared (TIR) hot spot using a first principles 3-D model described earlier. Various theoretical canopies of varying leaf size and for differing canopy height are used to illustrate the magnitude of the TIR effect. Our results are similar to predicted behavior in the reflective hot spot as a function of canopy geometry and comparable to TIR measurements from the literature and our own simple ground experiments. We apply the MODTRAN atmospheric code to estimate the at-sensor variation in brightness temperature with view direction in the solar principal plane. For simple homogeneous canopies, we predict canopy thermal infrared hot spot variations of 2 degrees C at the surface with respect to nadir viewing. Dependence on leaf size is weak as long as the ratio of leaf size to canopy height is maintained. However, the angular width of the hot spot increases as the ratio of leaf diameter to canopy height increases. Atmospheric effects minimize but do not eliminate the TIR hot spot at satellite altitudes.

GOSAT TIR spectral validation with High/Low temperature target using Aircraft base-FTS S-HIS

NASA Astrophysics Data System (ADS)

Kataoka, F.; Knuteson, R.; Taylor, J. K.; Kuze, A.; Shiomi, K.; Suto, H.; Yoshida, J.

2017-12-01

The Greenhouse gases Observing SATellite (GOSAT) was launched on January 2009. The GOSAT is equipped with TANSO-FTS (Fourier-Transform Spectrometer), which observe reflected solar radiation from the Earth's surface with shortwave infrared (SWIR) band and thermal emission from the Earth's surface and atmosphere with thermal infrared (TIR) band. The TIR band cover wide spectral range (650 - 1800 [cm-1]) with a high spectral resolution (0.2 [cm-1]). The TIR spectral information provide vertical distribution of CO2 and CH4. GOSAT has been operation more than eight years. In this long operation, GOSAT had experienced two big accidents; Rotation of one of the solar paddles stopped and sudden TANSO-FTS operation stop in May 2014 and cryocooler shutdown and restart in August - September 2015. These events affected the operation condition of the TIR photo-conductive (PC)-MCT detector. FTS technology using multiplex wide spectra needs wide dynamic range. PC detector has nonlinearity. Its correction needs accurate estimation of time-dependent offset. In current TIR Level 1B product version (V201), the non-photon level offset (Vdc_offset) estimated from on-orbit deep space calibration data and pre-launch background radiation model. But the background radiation and detector temperature have changed after cryocooler shutdown events. These changes are too small to detect from onboard temperature sensors. The next TIR Level 1B product uses cross calibration data together with deep space calibration data and instrument radiation model has been updated. This work describes the evaluation of new TIR Level 1B spectral quality with aircraft-based FTS; Scanning High-resolution Interferometer Sounder (S-HIS). The S-HIS mounted on the high-altitude ER-2 aircraft and flew at about 20km altitude. Because the observation geometry of GOSAT and S-HIS are quite different, we used the double difference method using atmospheric transfer model. GOSAT TIR band cover wide dynamic range, so we check the TIR spectral quality at high/low temperature target. (ex, desert, bare soil and ice sheet).

Protein Mobility within Secretory Granules

PubMed Central

Weiss, Annita Ngatchou; Bittner, Mary A.; Holz, Ronald W.; Axelrod, Daniel

2014-01-01

We investigated the basis for previous observations that fluorescent-labeled neuropeptide Y (NPY) is usually released within 200 ms after fusion, whereas labeled tissue plasminogen activator (tPA) is often discharged over many seconds. We found that tPA and NPY are endogenously expressed in small and different subpopulations of bovine chromaffin cells in culture. We measured the mobility of these proteins (tagged with fluorophore) within the lumen of individual secretory granules in living chromaffin cells, and related their mobilities to postfusion release kinetics. A method was developed that is not limited by standard optical resolution, in which a bright flash of strongly decaying evanescent field (∼64 nm exponential decay constant) produced by total internal reflection (TIR) selectively bleaches cerulean-labeled protein proximal to the glass coverslip within individual granules. Fluorescence recovery occurred as unbleached protein from distal regions within the 300 nm granule diffused into the bleached proximal regions. The fractional bleaching of tPA-cerulean (tPA-cer) was greater when subsequently probed with TIR excitation than with epifluorescence, indicating that tPA-cer mobility was low. The almost equal NPY-cer bleaching when probed with TIR and epifluorescence indicated that NPY-cer equilibrated within the 300 ms bleach pulse, and therefore had a greater mobility than tPA-cer. TIR-fluorescence recovery after photobleaching revealed a significant recovery of tPA-cer (but not NPY-cer) fluorescence within several hundred milliseconds after bleaching. Numerical simulations, which take into account bleach duration, granule diameter, and the limited number of fluorophores in a granule, are consistent with tPA-cer being 100% mobile, with a diffusion coefficient of 2 × 10−10 cm2/s (∼1/3000 of that for a protein of similar size in aqueous solution). However, the low diffusive mobility of tPA cannot alone explain its slow postfusion release. In the accompanying study, we suggest that, additionally, tPA itself stabilizes the fusion pore with dimensions that restrict its own exit. PMID:24988337

ASTER system operating achievement for 15 years on orbit

NASA Astrophysics Data System (ADS)

Inada, Hitomi; Ito, Yoshiyuki; Kikuchi, Masakuni; Sakuma, Fumihiro; Tatsumi, Kenji; Akagi, Shigeki; Ono, Hidehiko

2015-10-01

ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) System is operating more than 15 years since launched on board of NASA's Terra spacecraft in December 1999. ASTER System is composed of 3 radiometers (VNIR (Visible and Near Infrared Radiometer), SWIR (Short-Wave Infrared Radiometer), and TIR (Thermal Infrared Radiometer)), CSP (Common Signal Processor) and MSP (Master Power Supply). This paper describes the ASTER System operating history and the achievement of ASTER System long term operation since the initial checkout operation, the normal operation, and the continuous operation. Through the 15 years operation, ASTER system had totally checked the all subsystems (MPS, VNIR, TIR, SWIR, and CSP) health and safety check using telemetry data trend evaluation, and executed the necessary action. The watch items are monitored as the life control items. The pointing mechanics for VNIR, SWIR and TIR, and the cooler for SWIR and TIR are all operating with any problem for over 15 years. In 2003, ASTER was successfully operated for the lunar calibration. As the future plan, ASTER team is proposing the 2nd lunar calibration before the end of mission.

The development of optical microscopy techniques for the advancement of single-particle studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marchuk, Kyle

2013-05-15

Single particle orientation and rotational tracking (SPORT) has recently become a powerful optical microscopy tool that can expose many molecular motions. Unfortunately, there is not yet a single microscopy technique that can decipher all particle motions in all environmental conditions, thus there are limitations to current technologies. Within, the two powerful microscopy tools of total internal reflection and interferometry are advanced to determine the position, orientation, and optical properties of metallic nanoparticles in a variety of environments. Total internal reflection is an optical phenomenon that has been applied to microscopy to produce either fluorescent or scattered light. The non-invasive far-fieldmore » imaging technique is coupled with a near-field illumination scheme that allows for better axial resolution than confocal microscopy and epi-fluorescence microscopy. By controlling the incident illumination angle using total internal reflection fluorescence (TIRF) microscopy, a new type of imaging probe called “non-blinking” quantum dots (NBQDs) were super-localized in the axial direction to sub-10-nm precision. These particles were also used to study the rotational motion of microtubules being propelled by the motor protein kinesin across the substrate surface. The same instrument was modified to function under total internal reflection scattering (TIRS) microscopy to study metallic anisotropic nanoparticles and their dynamic interactions with synthetic lipid bilayers. Utilizing two illumination lasers with opposite polarization directions at wavelengths corresponding to the short and long axis surface plasmon resonance (SPR) of the nanoparticles, both the in-plane and out-of-plane movements of many particles could be tracked simultaneously. When combined with Gaussian point spread function (PSF) fitting for particle super-localization, the binding status and rotational movement could be resolved without degeneracy. TIRS microscopy was also used to find the 3D orientation of stationary metallic anisotropic nanoparticles utilizing only long-axis SPR enhancement. The polarization direction of the illuminating light was rotated causing the relative intensity of p-polarized and s-polarized light within the evanescent field to change. The interaction of the evanescent field with the particles is dependent on the orientation of the particle producing an intensity curve. This curve and the in-plane angle can be compared with simulations to accurately determine the 3D orientation. Differential interference contrast (DIC) microscopy is another non-invasive far-field technique based upon interferometry that does not rely on staining or other contrast enhancing techniques. In addition, high numerical aperture condensers and objectives can be used to give a very narrow depth of field allowing for the optical tomography of samples, which makes it an ideal candidate to study biological systems. DIC microscopy has also proven itself in determining the orientation of gold nanorods in both engineered environments and within cells. Many types of nanoparticles and nanostructures have been synthesized using lithographic techniques on silicon wafer substrates. Traditionally, reflective mode DIC microscopes have been developed and applied to the topographical study of reflective substrates and the imaging of chips on silicon wafers. Herein, a laser-illuminated reflected-mode DIC was developed for studying nanoparticles on reflective surfaces.« less

The development of optical microscopy techniques for the advancement of single-particle studies

NASA Astrophysics Data System (ADS)

Marchuk, Kyle

Single particle orientation and rotational tracking (SPORT) has recently become a powerful optical microscopy tool that can expose many molecular motions. Unfortunately, there is not yet a single microscopy technique that can decipher all particle motions in all environmental conditions, thus there are limitations to current technologies. Within, the two powerful microscopy tools of total internal reflection and interferometry are advanced to determine the position, orientation, and optical properties of metallic nanoparticles in a variety of environments. Total internal reflection is an optical phenomenon that has been applied to microscopy to produce either fluorescent or scattered light. The non-invasive far-field imaging technique is coupled with a near-field illumination scheme that allows for better axial resolution than confocal microscopy and epi-fluorescence microscopy. By controlling the incident illumination angle using total internal reflection fluorescence (TIRF) microscopy, a new type of imaging probe called "non-blinking" quantum dots (NBQDs) were super-localized in the axial direction to sub-10-nm precision. These particles were also used to study the rotational motion of microtubules being propelled by the motor protein kinesin across the substrate surface. The same instrument was modified to function under total internal reflection scattering (TIRS) microscopy to study metallic anisotropic nanoparticles and their dynamic interactions with synthetic lipid bilayers. Utilizing two illumination lasers with opposite polarization directions at wavelengths corresponding to the short and long axis surface plasmon resonance (SPR) of the nanoparticles, both the in-plane and out-of-plane movements of many particles could be tracked simultaneously. When combined with Gaussian point spread function (PSF) fitting for particle super-localization, the binding status and rotational movement could be resolved without degeneracy. TIRS microscopy was also used to find the 3D orientation of stationary metallic anisotropic nanoparticles utilizing only long-axis SPR enhancement. The polarization direction of the illuminating light was rotated causing the relative intensity of p-polarized and s-polarized light within the evanescent field to change. The interaction of the evanescent field with the particles is dependent on the orientation of the particle producing an intensity curve. This curve and the in-plane angle can be compared with simulations to accurately determine the 3D orientation. Differential interference contrast (DIC) microscopy is another non-invasive far-field technique based upon interferometry that does not rely on staining or other contrast enhancing techniques. In addition, high numerical aperture condensers and objectives can be used to give a very narrow depth of field allowing for the optical tomography of samples, which makes it an ideal candidate to study biological systems. DIC microscopy has also proven itself in determining the orientation of gold nanorods in both engineered environments and within cells. Many types of nanoparticles and nanostructures have been synthesized using lithographic techniques on silicon wafer substrates. Traditionally, reflective mode DIC microscopes have been developed and applied to the topographical study of reflective substrates and the imaging of chips on silicon wafers. Herein, a laser-illuminated reflected-mode DIC was developed for studying nanoparticles on reflective surfaces.

The clinical evaluation of International Normalized Ratio variability and control in conventional oral anticoagulant administration by use of the variance growth rate.

PubMed

Ibrahim, S; Jespersen, J; Poller, L

2013-08-01

The time in target International Normalized Ratio (INR) range (TIR) is used to assess the control and intensity of oral anticoagulation, but it does not measure variation in the INR. The value of assessing INR variability by use of the variance growth rate (VGR) as a predictor of events was investigated in patients treated with warfarin. Three different methods of VGR determination (A, B1, and B2) together with the TIR were studied. Method A measures both INR variability and control, but methods B1 and B2 measure variability only. The VGR and TIR were determined over three time periods: overall follow-up to an event, and 6 months and 3 months before an event. Six hundred and sixty-one control patients were matched to 158 cases (bleeding, thromboembolism, or death). With all VGR methods, the risk of an event was greater in unstable patients at 6 months before an event than in stable patients. Method A demonstrated the greatest risk 3 months before an event in the unstable VGR group as compared with the stable group (odds ratio 3.3, 95% confidence interval 1.9-5.7, P < 0.005). The risk of an event was 1.9 times greater in patients with a low TIR (< 39%) than in those with a high TIR (> 80%) in the 3-month period (P = 0.02). Risk of bleeding was significantly greater in the 3-month period in patients with unstable VGR, with the greatest risk found with method B2 (P < 0.01). Patients with unstable anticoagulation have a significantly increased risk of 'clinical events' at 3 and 6 months before an event. The VGR can be incorporated into computer-dosage programs, and may offer additional safety when oral anticoagulation is monitored. © 2013 International Society on Thrombosis and Haemostasis.

Novel Bio, Chemical, Environmental Sensing Based on New Model of Total Internal Reflection in Turbid Media

NASA Astrophysics Data System (ADS)

Bali, Samir; Judge, Patrick; Phillip, Nathan; Boivin, Jordan; Scaffidi, Jonathan; Berberich, Jason; Bali, Lalit

2014-05-01

We have initiated a collaborative experimental research program that combines new advances in optical physics, field portable chemical analysis, and biosensing. Our goal is to discover and characterize new optical sensing methodologies in opaque, highly scattering (i.e., ``turbid'') media, and demonstrate new paradigms for optical sensing in research and industry. We have three specific objectives. First, we propose to fully characterize and validate a new model of total internal reflection (TIR) from highly turbid media thus enabling a first demonstration of non-invasive, in-situ, real-time particle sizing for the case of arbitrary scattering particle size-a holy grail in colloidal science. Second, we propose to implement a first demonstration of real-time non-invasive measurement of nanoparticle aggregation in highly turbid media. Third, we propose to use our new sensing methodology to demonstrate real-time in-situ label-free monitoring of molecular interactions and adsorption at surfaces. We gratefully acknowledge support from the American Chemical Society Petroleum Research Fund and Miami University's Interdisciplinary Roundtable Fund. We also gratefully acknowledge experimental help from the Miami University Instrumentation Laboratory.

Transparent Solar Concentrator for Flat Panel Display

NASA Astrophysics Data System (ADS)

Yeh, Chia-Hung; Chang, Fuh-Yu; Young, Hong-Tsu; Hsieh, Tsung-Yen; Chang, Chia-Hsiung

2012-06-01

A new concept of the transparent solar concentrator for flat panel display is experimentally demonstrated without adversely affecting the visual effects. The solar concentrator is based on a solar light-guide plate with micro prisms, not only increasing the absorption area of solar energy but also enhancing the conversion efficiency. The incident light is guided by the designed solar light-guide plate according to the total internal reflection (TIR), and converted into electrical power by photovoltaic solar cells. The designed transparent solar concentrator was made and measured with high transparency, namely 94.8%. The developed solar energy system for display can store energy and supply the bias voltage to light on two light-emitting diodes (LEDs) successfully.

Cirrus Horizontal Heterogeneity Effects on Cloud Optical Properties Retrieved from MODIS VNIR to TIR Channels as a Function of the Spatial Resolution

NASA Astrophysics Data System (ADS)

Fauchez, T.; Platnick, S. E.; Sourdeval, O.; Wang, C.; Meyer, K.; Cornet, C.; Szczap, F.

2017-12-01

Cirrus are an important part of the Earth radiation budget but an assessment of their role yet remains highly uncertain. Cirrus optical properties such as Cloud Optical Thickness (COT) and ice crystal effective particle size (Re) are often retrieved with a combination of Visible/Near InfraRed (VNIR) and ShortWave-InfraRed (SWIR) reflectance channels. Alternatively, Thermal InfraRed (TIR) techniques, such as the Split Window Technique (SWT), have demonstrated better sensitivity to thin cirrus. However, current satellite operational products for both retrieval methods assume that cloudy pixels are horizontally homogeneous (Plane Parallel and Homogeneous Approximation (PPHA)) and independent (Independent Pixel Approximation (IPA)). The impact of these approximations on cirrus retrievals needs to be understood and, as far as possible, corrected. Horizontal heterogeneity effects can be more easily estimated and corrected in the TIR range because they are mainly dominated by the PPA bias, which primarily depends on the COT subpixel heterogeneity. For solar reflectance channels, in addition to the PPHA bias, the IPA can lead to significant retrieval errors if there is large photon transport between cloudy columns in addition to brightening and shadowing effects that are more difficult to quantify.The effects of cirrus horizontal heterogeneity are here studied on COT and Re retrievals obtained using simulated MODIS reflectances at 0.86 and 2.11 μm and radiances at 8.5, 11.0 and 12.0 μm, for spatial resolutions ranging from 50 m to 10 km. For each spatial resolution, simulated TOA reflectances and radiances are combined for cloud optical property retrievals with a research-level optimal estimation retrieval method (OEM). The impact of horizontal heterogeneity on the retrieved products is assessed for different solar geometries and various combinations of the five channels.

Multi-layer Retrievals of Greenhouse Gases from a Combined Use of GOSAT TANSO-FTS SWIR and TIR

NASA Astrophysics Data System (ADS)

Kikuchi, N.; Kuze, A.; Kataoka, F.; Shiomi, K.; Hashimoto, M.; Suto, H.; Knuteson, R. O.; Iraci, L. T.; Yates, E. L.; Gore, W.; Tanaka, T.; Yokota, T.

2016-12-01

The TANSO-FTS sensor onboard GOSAT has three frequency bands in the shortwave infrared (SWIR) and the fourth band in the thermal infrared (TIR). Observations of high-resolution spectra of reflected sunlight in the SWIR are extensively utilized to retrieve column-averaged concentrations of the major greenhouse gases such as carbon dioxide (XCO2) and methane (XCH4). Although global XCO2 and XCH4 distribution retrieved from SWIR data can reduce the uncertainty in the current knowledge about sources and sinks of these gases, information on the vertical profiles would be more useful to constrain the surface flux and also to identify the local emission sources. Based on the degrees of freedom for signal, Kulawik et al. (2016, IWGGMS-12 presentation) shows that 2-layer information on the concentration of CO2 can be extracted from TANSO-FTS SWIR measurements, and the retrieval error is predicted to be about 5 ppm in the lower troposphere. In this study, we present multi-layer retrievals of CO2 and CH4 from a combined use of measurements of TANSO-FTS SWIR and TIR. We selected GOSAT observations at Railroad Valley Playa in Nevada, USA, which is a vicarious calibration site for TANSO-FTS, as we have various ancillary data including atmospheric temperature and humidity taken by a radiosonde, surface temperature, and surface emissivity with a ground based FTS. All of these data are useful especially for retrievals using TIR spectra. Currently, we use the 700-800 cm-1 and 1200-1300 cm-1 TIR windows for CO2 and CH4 retrievals, respectively, in addition to the SWIR bands. We found that by adding TIR windows, 3-layer information can be extracted, and the predicted retrieval error in the CO2 concentration was reduced about 1 ppm in the lower troposphere. We expect that the retrieval error could be further reduced by optimizing TIR windows and by reducing systematic forward model errors.

Simultaneous inversion of multiple land surface parameters from MODIS optical-thermal observations

NASA Astrophysics Data System (ADS)

Ma, Han; Liang, Shunlin; Xiao, Zhiqiang; Shi, Hanyu

2017-06-01

Land surface parameters from remote sensing observations are critical in monitoring and modeling of global climate change and biogeochemical cycles. Current methods for estimating land surface variables usually focus on individual parameters separately even from the same satellite observations, resulting in inconsistent products. Moreover, no efforts have been made to generate global products from integrated observations from the optical to Thermal InfraRed (TIR) spectrum. Particularly, Middle InfraRed (MIR) observations have received little attention due to the complexity of the radiometric signal, which contains both reflected and emitted radiation. In this paper, we propose a unified algorithm for simultaneously retrieving six land surface parameters - Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), land surface albedo, Land Surface Emissivity (LSE), Land Surface Temperature (LST), and Upwelling Longwave radiation (LWUP) by exploiting MODIS visible-to-TIR observations. We incorporate a unified physical radiative transfer model into a data assimilation framework. The MODIS visible-to-TIR time series datasets include the daily surface reflectance product and MIR-to-TIR surface radiance, which are atmospherically corrected from the MODIS data using the Moderate Resolution Transmittance program (MODTRAN, ver. 5.0). LAI was first estimated using a data assimilation method that combines MODIS daily reflectance data and a LAI phenology model, and then the LAI was input to the unified radiative transfer model to simulate spectral surface reflectance and surface emissivity for calculating surface broadband albedo and emissivity, and FAPAR. LST was estimated from the MIR-TIR surface radiance data and the simulated emissivity, using an iterative optimization procedure. Lastly, LWUP was estimated using the LST and surface emissivity. The retrieved six parameters were extensively validated across six representative sites with different biome types, and compared with MODIS, GLASS, and GlobAlbedo land surface products. The results demonstrate that the unified inversion algorithm can retrieve temporally complete and physically consistent land surface parameters, and provides more accurate estimates of surface albedo, LST, and LWUP than existing products, with R2 values of 0.93 and 0.62, RMSE of 0.029 and 0.037, and BIAS values of 0.016 and 0.012 for the retrieved and MODIS albedo products, respectively, compared with field albedo measurements; R2 values of 0.95 and 0.93, RMSE of 2.7 and 4.2 K, and BIAS values of -0.6 and -2.7 K for the retrieved and MODIS LST products, respectively, compared with field LST measurements; and R2 values of 0.93 and 0.94, RMSE of 18.2 and 22.8 W/m2, and BIAS values of -2.7 and -14.6 W/m2 for the retrieved and MODIS LWUP products, respectively, compared with field LWUP measurements.

An ultrashort throw ratio projection lens design based on a catadioptric structure

NASA Astrophysics Data System (ADS)

Wang, Hsiu-Cheng; Pan, Jui-Wen

2018-07-01

In this paper, we present a rotational symmetry for an ultrashort throw (UST) lens with offset field. The UST lens has a throw ratio of 0.23 and a total track of 195 mm. The optical elements of the UST lens are comprised of two parts. First, a catadioptric projection lens where the catadioptric function permits reaching an ultrashort throw ratio, short total track, while at the same time requiring fewer lens elements. The second part is a collimating lens which takes advantage of the telecentric condition to generate uniform total internal reflection (TIR) in the TIR prism. With this design, an effective focal length of -1.96 mm and a f-number of 2.4 can be obtained. The root mean square spot size and lateral colour of all fields are smaller than one pixel in size. The maximum optical distortion of -0.97% and TV distortion of 0.2% are acceptable. In terms of image quality, the modulation transfer function (MTF) values for all fields are above 0.65 at 0.245 line pairs/mm. Even when the tolerance error is considered, the MTF values for all fields are still above 0.3. The suitability of the novel UST lens design for projection applications is discussed.

Analysis of the rectangular resonator with butterfly MMI coupler using SOI

NASA Astrophysics Data System (ADS)

Kim, Sun-Ho; Park, Jun-Hee; Kim, Eudum; Jeon, Su-Jin; Kim, Ji-Hoon; Choi, Young-Wan

2018-02-01

We propose a rectangular resonator sensor structure with butterfly MMI coupler using SOI. It consists of the rectangular resonator, total internal reflection (TIR) mirror, and the butterfly MMI coupler. The rectangular resonator is expected to be used as bio and chemical sensors because of the advantages of using MMI coupler and the absence of bending loss unlike ring resonators. The butterfly MMI coupler can miniaturize the device compared to conventional MMI by using a linear butterfly shape instead of a square in the MMI part. The width, height, and slab height of the rib type waveguide are designed to be 1.5 μm, 1.5 μm, and 0.9 μm, respectively. This structure is designed as a single mode. When designing a TIR mirror, we considered the Goos-Hänchen shift and critical angle. We designed 3:1 MMI coupler because rectangular resonator has no bending loss. The width of MMI is designed to be 4.5 μm and we optimize the length of the butterfly MMI coupler using finite-difference time-domain (FDTD) method for higher Q-factor. It has the equal performance with conventional MMI even though the length is reduced by 1/3. As a result of the simulation, Qfactor of rectangular resonator can be obtained as 7381.

Plasmon-enhanced photocurrent generation from self-assembled monolayers of phthalocyanine by using gold nanoparticle films.

PubMed

Sugawa, Kosuke; Akiyama, Tsuyoshi; Kawazumi, Hirofumi; Yamada, Sunao

2009-04-09

The effect of localized electric fields on the photocurrent responses of phthalocyanine that was self-assembled on a gold nanoparticle film was investigated by comparing the conventional and the total internal reflection (TIR) experimental systems. In the case of photocurrent measurements, self-assembled monolayers (SAMs) of a thiol derivative of palladium phthalocyanine (PdPc) were prepared on the surface of gold-nanoparticle film that was fixed on the surface of indium-tin-oxide (ITO) substrate via a polyion (PdPc/AuP/polyion/ITO) or on the ITO surface (PdPc/ITO). Photocurrent action spectra from the two samples were compared by using the conventional spectrometer, and were found that PdPc/AuP/polyion/ITO gave considerably larger photocurrent signals than PdPc/ITO under the identical concentration of PdPc. In the case of the TIR experiments for the PdPc/AuP/polyion/ITO and the PdPc/AuP/Glass systems, incident-angle profiles of photocurrent and emission signals were correlated with each other, and they were different from that of the PdPc/ITO system. Accordingly, it was demonstrated that the photocurrent signals were certainly enhanced by the localized electric fields of the gold-nanoparticle film.

QED induced redshift and anomalous microwave emission from dust

NASA Astrophysics Data System (ADS)

Prevenslik, Thomas V.

2015-08-01

The Planck satellite imaging of CMB polarizations at 353 GHz extrapolated to 160 GHz suggested the AME was caused by dust and not as a relic of gravity waves from Universe expansion. AME stands for anomalous microwave emisssion. Similarly, dust has also been implicated in questioning Universe expansion by exaggerating Hubble redshift measurements. In this regard, QED induced EM radiation in dust NPs may be the commonality by which an expanding Universe may be assessed. QED stands for quantum electrodynamics, EM for electromagnetic, and NPs for nanoparticles. QED radiation is a consequence of QM that denies the atoms in NPs under TIR confinement the heat capacity to allow increases in NP temperature upon absorbing galaxy light. QM stands for quantum mechanics and TIR for total internal reflection.In this paper, the only galaxy light considered are single Lyα photons absorbed in spherical dust NPs. Since NPs have high surface to volume ratios, an absorbed Lyα photon is induced by QED to be totally confined by TIR to the NP surface. Hence, the TIR wavelength λ of the QED photon moving at velocity c/n in the NP surface is λ = 2πa, where c is the speed of light, and n and a are the refractive index and radius of the NP. The boundary between QED induced spinning and redshift depends on the NP material. For amorphous silicate, small NPs with a < 0.040 microns conserve the Lyα photon energy by NP spinning; whereas, the larger NPs having a > 0.040 microns redshift the Lyα photon to produce VIS and near IR galaxy light.Since the TIR mode is tangential to the surface of the NP, the Lyα photon produces circularly polarized light during absorption thereby exerting a momentary torque on the NP. Conserving the Lyα photon energy hc/λ* with the rotational energy ½ Jω2 of the NP gives the spin ω = √ (2 hc/Jλ*). Here, h is Planck’s constant, λ* the Lyα wavelength, J the NP rotational moment of inertia, J = 2 ma2/5, m the NP mass, m = 4πρa3/3, and ρ the NP density. Hence, the spin rate ω for amorphous silicate NPs having radii 0.001 < a < 0.04 microns suggests AME from 0.1 to 860 GHz as well as redshift produced in dust may be used to assess Universe expansion.

Characteristics of Four-years of GOSAT/TANSO-FTS TIR V1.0 CO2 and CH4 Products

NASA Astrophysics Data System (ADS)

Saitoh, N.; Kimoto, S.; Sugimura, R.; Imasu, R.; Shiomi, K.; Kuze, A.; Kataoka, F.; Knuteson, R. O.; Machida, T.; Sawa, Y.; Matsuda, H.

2015-12-01

Greenhouse Gases Observing Satellite (GOSAT) was launched on 23 January 2009, and has continued to make global observations, including both nadir and off-nadir measurements, for more than six years since its launch. The thermal infrared (TIR) band of Thermal and Near-infrared Sensor for Carbon Observation Fourier Transform Spectrometer (TANSO-FTS) on board the GOSAT has observed CO2 and CH4 profiles. We have analyzed the four-year data from 2010 through 2013 of the latest released version of the TIR Level 2 (L2) CO2 and CH4 products (V1.0). Comparisons of the TIR upper atmospheric CO2 product with CO2 data from Comprehensive Observation Network for Trace Gases by Airliner (CONTRAIL) aircraft measurements show that the growth rate estimated from the TIR CO2 data is slightly lower than that from the CONTRAIL data. Overall, the TIR V1.0 CO2 product has better quality in the upper troposphere and lower stratosphere than the a priori judging from comparisons with the collocated aircraft data. In spring and summer, however, the quality of the TIR L2 CO2 products became slightly worse than in the other seasons, especially in the low and northern-mid latitudes. This is because the corresponding a priori had a larger bias and the TIR Level 1B (L1B) radiance spectra might have a larger bias in the spring-summer seasons. Here, we have tested several types of correction methods to modify the L1B spectral bias, and then compared CO2 and CH4 concentrations retrieved after applying spectral bias correction factors with coincident CONTRAIL and HIAPER Pole-to-Pole Observation (HIPPO) aircraft data. The comparison results suggest that the L1B spectral bias correction factor should be changed depending on wavelength. In addition, it should be expressed as a function of on-board internal calibration blackbody temperatures. This is because they are weak season-dependent parameters; they were clearly lower in spring and summer.

Free-form surface design method for a collimator TIR lens.

PubMed

Tsai, Chung-Yu

2016-04-01

A free-form (FF) surface design method is proposed for a general axial-symmetrical collimator system consisting of a light source and a total internal reflection lens with two coupled FF boundary surfaces. The profiles of the boundary surfaces are designed using a FF surface construction method such that each incident ray is directed (refracted and reflected) in such a way as to form a specified image pattern on the target plane. The light ray paths within the system are analyzed using an exact analytical model and a skew-ray tracing approach. In addition, the validity of the proposed FF design method is demonstrated by means of ZEMAX simulations. It is shown that the illumination distribution formed on the target plane is in good agreement with that specified by the user. The proposed surface construction method is mathematically straightforward and easily implemented in computer code. As such, it provides a useful tool for the design and analysis of general axial-symmetrical optical systems.

A High-Efficiency Refractive Secondary Solar Concentrator for High Temperature Solar Thermal Applications

NASA Technical Reports Server (NTRS)

Piszczor, Michael F., Jr.; Macosko, Robert P.

2000-01-01

A refractive secondary solar concentrator is a non-imaging optical device that accepts focused solar energy from a primary concentrator and redirects that light, by means of refraction and total internal reflection (TIR) into a cavity where the solar energy is used for power and/or propulsion applications. This concept offers a variety of advantages compared to typical reflective secondary concentrators (or the use of no secondary at all): higher optical efficiency, minimal secondary cooling requirements, a smaller cavity aperture, a reduction of outgassing from the cavity and flux tailoring of the solar energy within the heat receiver. During the past 2 years, NASA Lewis has been aggressively developing this concept in support of the NASA Marshall Shooting Star Flight Experiment. This paper provides a brief overview of the advantages and technical challenges associated with the development of a refractive secondary concentrator and the fabrication of a working unit in support of the flight demonstration program.

Structural and sequence diversity of the transposon Galileo in the Drosophila willistoni genome.

PubMed

Gonçalves, Juliana W; Valiati, Victor Hugo; Delprat, Alejandra; Valente, Vera L S; Ruiz, Alfredo

2014-09-13

Galileo is one of three members of the P superfamily of DNA transposons. It was originally discovered in Drosophila buzzatii, in which three segregating chromosomal inversions were shown to have been generated by ectopic recombination between Galileo copies. Subsequently, Galileo was identified in six of 12 sequenced Drosophila genomes, indicating its widespread distribution within this genus. Galileo is strikingly abundant in Drosophila willistoni, a neotropical species that is highly polymorphic for chromosomal inversions, suggesting a role for this transposon in the evolution of its genome. We carried out a detailed characterization of all Galileo copies present in the D. willistoni genome. A total of 191 copies, including 133 with two terminal inverted repeats (TIRs), were classified according to structure in six groups. The TIRs exhibited remarkable variation in their length and structure compared to the most complete copy. Three copies showed extended TIRs due to internal tandem repeats, the insertion of other transposable elements (TEs), or the incorporation of non-TIR sequences into the TIRs. Phylogenetic analyses of the transposase (TPase)-encoding and TIR segments yielded two divergent clades, which we termed Galileo subfamilies V and W. Target-site duplications (TSDs) in D. willistoni Galileo copies were 7- or 8-bp in length, with the consensus sequence GTATTAC. Analysis of the region around the TSDs revealed a target site motif (TSM) with a 15-bp palindrome that may give rise to a stem-loop secondary structure. There is a remarkable abundance and diversity of Galileo copies in the D. willistoni genome, although no functional copies were found. The TIRs in particular have a dynamic structure and extend in different ways, but their ends (required for transposition) are more conserved than the rest of the element. The D. willistoni genome harbors two Galileo subfamilies (V and W) that diverged ~9 million years ago and may have descended from an ancestral element in the genome. Galileo shows a significant insertion preference for a 15-bp palindromic TSM.

Integral freeform illumination lens design of LED based pico-projector.

PubMed

Zhao, Shuang; Wang, Kai; Chen, Fei; Qin, Zong; Liu, Sheng

2013-05-01

In this paper, an illumination lens design for a LED-based pico-projector is presented. Different from the traditional illumination systems composed by lens group, the integral illumination lens consists of a total internal reflector (TIR) and a freeform surface. TIR acts as collimation lens and its top surface formed by a freeform surface reshapes the nonuniform circular light pattern generated by TIR to be rectangular and uniform. Diameter and height of the lens are 16 and 10 mm, respectively. An optimization method to deal with the problem of extended light source is also presented in detail in this paper. According to the simulation results of the final optimized lens, 77% (neglecting the effect of polarization) of the power of light source is collected on liquid crystal on silicon panel with a 16∶9 ratio and illumination uniformity achieves 92%.

ASTER First Views of Rift Valley, Ethiopia - Thermal-Infrared TIR Image color

NASA Image and Video Library

2000-03-11

This image is a color composite covering the Rift Valley inland area of Ethiopia (south of the region shown in PIA02452). The color difference of this image reflects the distribution of different rocks with different amounts of silicon dioxide. It is inferred that the area with whitish color is covered with basalt and the pinkish area in the center contain sandesite. This is the first spaceborne, multi-band TIR image in history that enables geologists to distinguish between rocks with similar compositions. The size of image: 60 km x 60 km approx., ground resolution 90 m x 90 m approximately. http://photojournal.jpl.nasa.gov/catalog/PIA02453

Tetris Is a Foldback Transposon that Provided the Building Blocks for an Emerging Satellite DNA of Drosophila virilis

PubMed Central

Dias, Guilherme B.; Svartman, Marta; Delprat, Alejandra; Ruiz, Alfredo; Kuhn, Gustavo C.S.

2014-01-01

Transposable elements (TEs) and satellite DNAs (satDNAs) are abundant components of most eukaryotic genomes studied so far and their impact on evolution has been the focus of several studies. A number of studies linked TEs with satDNAs, but the nature of their evolutionary relationships remains unclear. During in silico analyses of the Drosophila virilis assembled genome, we found a novel DNA transposon we named Tetris based on its modular structure and diversity of rearranged forms. We aimed to characterize Tetris and investigate its role in generating satDNAs. Data mining and sequence analysis showed that Tetris is apparently nonautonomous, with a structure similar to foldback elements, and present in D. virilis and D. americana. Herein, we show that Tetris shares the final portions of its terminal inverted repeats (TIRs) with DAIBAM, a previously described miniature inverted transposable element implicated in the generation of chromosome inversions. Both elements are likely to be mobilized by the same autonomous TE. Tetris TIRs contain approximately 220-bp internal tandem repeats that we have named TIR-220. We also found TIR-220 repeats making up longer (kb-size) satDNA-like arrays. Using bioinformatic, phylogenetic and cytogenomic tools, we demonstrated that Tetris has contributed to shaping the genomes of D. virilis and D. americana, providing internal tandem repeats that served as building blocks for the amplification of satDNA arrays. The β-heterochromatic genomic environment seemed to have favored such amplification. Our results imply for the first time a role for foldback elements in generating satDNAs. PMID:24858539

Using Electronic Interviews to Explore Student Understanding

NASA Astrophysics Data System (ADS)

Wagner, D. J.; Rivera, J. J.; Mateycik, Fran; Jennings, Sybillyn

2005-09-01

This paper reports on methods used to probe student understandings of optical fibers and total internal reflection (TIR). The study was conducted as part of the expansion and improvement of web-based materials for an innovative introductory physics course. Initially, we conducted face-to-face Piaget-style interviews with a convenience sample. Our next step was to interview students taking the course at Rensselaer. Physical limitations necessitated that this be done from a distance, so we conducted "e-interviews" using a Chat Room. In this paper we focus on the e-interview experience, discussing similarities to and differences from the traditional face-to-face approach. In the process, we address how each method informs us about students' activation of prior experiences in making sense of unfamiliar phenomena (e.g., "transfer of learning").

Determination of optimum viewing angles for the angular normalization of land surface temperature over vegetated surface.

PubMed

Ren, Huazhong; Yan, Guangjian; Liu, Rongyuan; Li, Zhao-Liang; Qin, Qiming; Nerry, Françoise; Liu, Qiang

2015-03-27

Multi-angular observation of land surface thermal radiation is considered to be a promising method of performing the angular normalization of land surface temperature (LST) retrieved from remote sensing data. This paper focuses on an investigation of the minimum requirements of viewing angles to perform such normalizations on LST. The normally kernel-driven bi-directional reflectance distribution function (BRDF) is first extended to the thermal infrared (TIR) domain as TIR-BRDF model, and its uncertainty is shown to be less than 0.3 K when used to fit the hemispheric directional thermal radiation. A local optimum three-angle combination is found and verified using the TIR-BRDF model based on two patterns: the single-point pattern and the linear-array pattern. The TIR-BRDF is applied to an airborne multi-angular dataset to retrieve LST at nadir (Te-nadir) from different viewing directions, and the results show that this model can obtain reliable Te-nadir from 3 to 4 directional observations with large angle intervals, thus corresponding to large temperature angular variations. The Te-nadir is generally larger than temperature of the slant direction, with a difference of approximately 0.5~2.0 K for vegetated pixels and up to several Kelvins for non-vegetated pixels. The findings of this paper will facilitate the future development of multi-angular thermal infrared sensors.

Determination of Optimum Viewing Angles for the Angular Normalization of Land Surface Temperature over Vegetated Surface

PubMed Central

Ren, Huazhong; Yan, Guangjian; Liu, Rongyuan; Li, Zhao-Liang; Qin, Qiming; Nerry, Françoise; Liu, Qiang

2015-01-01

Multi-angular observation of land surface thermal radiation is considered to be a promising method of performing the angular normalization of land surface temperature (LST) retrieved from remote sensing data. This paper focuses on an investigation of the minimum requirements of viewing angles to perform such normalizations on LST. The normally kernel-driven bi-directional reflectance distribution function (BRDF) is first extended to the thermal infrared (TIR) domain as TIR-BRDF model, and its uncertainty is shown to be less than 0.3 K when used to fit the hemispheric directional thermal radiation. A local optimum three-angle combination is found and verified using the TIR-BRDF model based on two patterns: the single-point pattern and the linear-array pattern. The TIR-BRDF is applied to an airborne multi-angular dataset to retrieve LST at nadir (Te-nadir) from different viewing directions, and the results show that this model can obtain reliable Te-nadir from 3 to 4 directional observations with large angle intervals, thus corresponding to large temperature angular variations. The Te-nadir is generally larger than temperature of the slant direction, with a difference of approximately 0.5~2.0 K for vegetated pixels and up to several Kelvins for non-vegetated pixels. The findings of this paper will facilitate the future development of multi-angular thermal infrared sensors. PMID:25825975

Identification of multiple binding sites for the THAP domain of the Galileo transposase in the long terminal inverted-repeats☆

PubMed Central

Marzo, Mar; Liu, Danxu; Ruiz, Alfredo; Chalmers, Ronald

2013-01-01

Galileo is a DNA transposon responsible for the generation of several chromosomal inversions in Drosophila. In contrast to other members of the P-element superfamily, it has unusually long terminal inverted-repeats (TIRs) that resemble those of Foldback elements. To investigate the function of the long TIRs we derived consensus and ancestral sequences for the Galileo transposase in three species of Drosophilids. Following gene synthesis, we expressed and purified their constituent THAP domains and tested their binding activity towards the respective Galileo TIRs. DNase I footprinting located the most proximal DNA binding site about 70 bp from the transposon end. Using this sequence we identified further binding sites in the tandem repeats that are found within the long TIRs. This suggests that the synaptic complex between Galileo ends may be a complicated structure containing higher-order multimers of the transposase. We also attempted to reconstitute Galileo transposition in Drosophila embryos but no events were detected. Thus, although the limited numbers of Galileo copies in each genome were sufficient to provide functional consensus sequences for the THAP domains, they do not specify a fully active transposase. Since the THAP recognition sequence is short, and will occur many times in a large genome, it seems likely that the multiple binding sites within the long, internally repetitive, TIRs of Galileo and other Foldback-like elements may provide the transposase with its binding specificity. PMID:23648487

Identification of multiple binding sites for the THAP domain of the Galileo transposase in the long terminal inverted-repeats.

PubMed

Marzo, Mar; Liu, Danxu; Ruiz, Alfredo; Chalmers, Ronald

2013-08-01

Galileo is a DNA transposon responsible for the generation of several chromosomal inversions in Drosophila. In contrast to other members of the P-element superfamily, it has unusually long terminal inverted-repeats (TIRs) that resemble those of Foldback elements. To investigate the function of the long TIRs we derived consensus and ancestral sequences for the Galileo transposase in three species of Drosophilids. Following gene synthesis, we expressed and purified their constituent THAP domains and tested their binding activity towards the respective Galileo TIRs. DNase I footprinting located the most proximal DNA binding site about 70 bp from the transposon end. Using this sequence we identified further binding sites in the tandem repeats that are found within the long TIRs. This suggests that the synaptic complex between Galileo ends may be a complicated structure containing higher-order multimers of the transposase. We also attempted to reconstitute Galileo transposition in Drosophila embryos but no events were detected. Thus, although the limited numbers of Galileo copies in each genome were sufficient to provide functional consensus sequences for the THAP domains, they do not specify a fully active transposase. Since the THAP recognition sequence is short, and will occur many times in a large genome, it seems likely that the multiple binding sites within the long, internally repetitive, TIRs of Galileo and other Foldback-like elements may provide the transposase with its binding specificity. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

Real-time detection and monitoring of the drug resistance of single myeloid leukemia cells by diffused total internal reflection.

PubMed

Liang, L; Jin, Y X; Zhu, X Q; Zhou, F L; Yang, Y

2018-05-15

Real-time detection and monitoring of the drug resistance of single cells have important significance in clinical diagnosis and therapy. Traditional methods operate a number of times for each individual concentration, and innovation is required for the design of more simple and efficient manipulation platforms with necessary higher sensitivity. Here, we have developed a novel diffused total internal reflection (TIR) method to perform drug metabolism and cytotoxicity analysis of trapped myeloid leukemia cells. Molm-13 cells, a type of acute myeloid leukemia cell, were chosen and injected into the device and fittingly captured by cell traps. Differing from previous studies, a series of different concentrations of azelaic acid (AZA) drug could be used from 0 mM to 50 mM through convection and diffusion processes in a single chip, with each concentration region featuring 50 cells, with a total of 549 cell trapping units. Thanks to the high sensitivity of the TIR method, only cells with the same drug concentration could be illuminated in the detection process. By adjusting the incident angle, we could exactly detect and monitor the drug resistance of the cells using different drug concentrations and the experimental resolution of the drug concentration was as small as 5 mM. Images of the membrane integrity and morphology of the cells in the bright field were measured and we also monitored the cell viabilities in the dark field over 2 hours. The effects of AZA on the Molm-13 cells were explored in different concentrations at the single cell level. Compared with the results of the traditional MTT assay method, the experimental results are more simple and accurate. A cell death of 5% at an AZA concentration of 5 mM was observed after 30 minutes, while a concentration of 40 mM corresponded to a 98% cell death. The designed method in this study provides a novel toolkit to control and monitor drug resistance at the single cell level more easily with higher sensitivity and we believe it has significant potential application in single cell quality assessment and medicine analysis in clinical practice.

Tetris is a foldback transposon that provided the building blocks for an emerging satellite DNA of Drosophila virilis.

PubMed

Dias, Guilherme B; Svartman, Marta; Delprat, Alejandra; Ruiz, Alfredo; Kuhn, Gustavo C S

2014-05-24

Transposable elements (TEs) and satellite DNAs (satDNAs) are abundant components of most eukaryotic genomes studied so far and their impact on evolution has been the focus of several studies. A number of studies linked TEs with satDNAs, but the nature of their evolutionary relationships remains unclear. During in silico analyses of the Drosophila virilis assembled genome, we found a novel DNA transposon we named Tetris based on its modular structure and diversity of rearranged forms. We aimed to characterize Tetris and investigate its role in generating satDNAs. Data mining and sequence analysis showed that Tetris is apparently nonautonomous, with a structure similar to foldback elements, and present in D. virilis and D. americana. Herein, we show that Tetris shares the final portions of its terminal inverted repeats (TIRs) with DAIBAM, a previously described miniature inverted transposable element implicated in the generation of chromosome inversions. Both elements are likely to be mobilized by the same autonomous TE. Tetris TIRs contain approximately 220-bp internal tandem repeats that we have named TIR-220. We also found TIR-220 repeats making up longer (kb-size) satDNA-like arrays. Using bioinformatic, phylogenetic and cytogenomic tools, we demonstrated that Tetris has contributed to shaping the genomes of D. virilis and D. americana, providing internal tandem repeats that served as building blocks for the amplification of satDNA arrays. The β-heterochromatic genomic environment seemed to have favored such amplification. Our results imply for the first time a role for foldback elements in generating satDNAs. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

A Staphylococcus aureus TIR domain protein virulence factor blocks TLR2-mediated NF-κB signaling.

PubMed

Askarian, Fatemeh; van Sorge, Nina M; Sangvik, Maria; Beasley, Federico C; Henriksen, Jørn R; Sollid, Johanna U E; van Strijp, Jos A G; Nizet, Victor; Johannessen, Mona

2014-01-01

Signaling through Toll-like receptors (TLRs), crucial molecules in the induction of host defense responses, requires adaptor proteins that contain a Toll/interleukin-1 receptor (TIR) domain. The pathogen Staphylococcus aureus produces several innate immune-evasion molecules that interfere with the host's innate immune response. A database search analysis suggested the presence of a gene encoding a homologue of the human TIR domain in S. aureus MSSA476 which was named staphylococcal TIR domain protein (TirS). Ectopic expression of TirS in human embryonic kidney, macrophage and keratinocyte cell lines interfered with signaling through TLR2, including MyD88 and TIRAP, NF-κB and/or mitogen-activated protein kinase pathways. Moreover, the presence of TirS reduced the levels of cytokines MCP-1 and G-CSF secreted in response to S. aureus. The effects on NF-κB pathway were confirmed using S. aureus MSSA476 wild type, an isogenic mutant MSSA476ΔtirS, and complemented MSSA476ΔtirS +pTirS in a Transwell system where bacteria and host cells were physically separated. Finally, in a systematic mouse infection model, TirS promoted bacterial accumulation in several organs 4 days postinfection. The results of this study reveal a new S. aureus virulence factor that can interfere with PAMP-induced innate immune signaling in vitro and bacterial survival in vivo. © 2014 S. Karger AG, Basel.

Perpendicularly magnetized YIG-film resonators and waveguides with high operating power

DOE PAGES

Balinskiy, M.; Mongolov, B.; Gutierrez, D.; ...

2016-12-27

We propose a novel technique for building YIG film-based resonators and waveguides for high power operating microwave devices. Our approach is based on the effect of total internal reflection (TIR) at the interface between the non-metalized and metalized regions of YIG film, which take place for forward volume magnetostatic spin waves in perpendicularly magnetized YIG films. Prototype resonators and waveguides were designed, fabricated, and tested. The obtained experimental data demonstrate high quality factor of 50 dB and a high power operation up to +15 dBm in the frequency range from 1.8 GHz to 5.1 GHz. Application of such resonators andmore » waveguides in electrically tunable microwave oscillators promises an extremely low phase noises about - 135 dB/Hz at 10 kHz offset.« less

Cross-Calibration of Ground and Airborne TIR and VSWIR Instruments for NASA's SnowEx 2017 Grand Mesa Campaign

NASA Astrophysics Data System (ADS)

Crawford, C. J.; Chickadel, C. C.; Hall, D. K.; Jennings, D. E.; Jhabvala, M. D.; Kim, E. J.; Jessica, L.; Lunsford, A.

2017-12-01

The NASA Terrestrial Hydrology Program sponsored a ground and airborne snow experiment (SnowEx) to the Grand Mesa area and Senator Beck Basin in western Colorado during February 2017. This communication summarizes efforts to develop traceable instrument calibration requirements for SnowEx Grand Mesa in support of thermal infrared (TIR) and visible-to-shortwave infrared (VSWIR) snow measurement science. Cross-calibration outcomes for TIR instruments (7-10 µm and 8-14 µm response functions) indicate that an at-sensor measurement accuracy of within 1.5 degrees Celsius was achieved across ground and airborne sensors using laboratory and field blackbody sources. A cross-calibration assessment of VSWIR spectrometers (0.35 to 2.5 µm response functions) using a National Institutes of Standard Technology (NIST) traceable source indicates an at-sensor measurement accuracy of within 5% for visible-near infrared spectral radiance (W/cm-2/sr-1/nm) and irradiance (W/m-2/nm), and within 20% for shortwave infrared measurements before a radiometric cross-calibration correction was applied. Additional validation is undertaken to assess the ground and airborne SnowEx Grand Mesa TIR and VSWIR instrument cross-calibration quality by benchmarking against on-orbit image acquisitions of the snow surface on February 14th and 15th, 2017 from Landsat Enhanced Thematic Mapper Plus (ETM+), Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), and Sentinel-2A Multi-Spectral Instrument (MSI).

An Intercomparison Between Radar Reflectivity and the IR Cloud Classification Technique for the TOGA-COARE Area

NASA Technical Reports Server (NTRS)

Carvalho, L. M. V.; Rickenbach, T.

1999-01-01

Satellite infrared (IR) and visible (VIS) images from the Tropical Ocean Global Atmosphere - Coupled Ocean Atmosphere Response Experiment (TOGA-COARE) experiment are investigated through the use of Clustering Analysis. The clusters are obtained from the values of IR and VIS counts and the local variance for both channels. The clustering procedure is based on the standardized histogram of each variable obtained from 179 pairs of images. A new approach to classify high clouds using only IR and the clustering technique is proposed. This method allows the separation of the enhanced convection in two main classes: convective tops, more closely related to the most active core of the storm, and convective systems, which produce regions of merged, thick anvil clouds. The resulting classification of different portions of cloudiness is compared to the radar reflectivity field for intensive events. Convective Systems and Convective Tops are followed during their life cycle using the IR clustering method. The areal coverage of precipitation and features related to convective and stratiform rain is obtained from the radar for each stage of the evolving Mesoscale Convective Systems (MCS). In order to compare the IR clustering method with a simple threshold technique, two IR thresholds (Tir) were used to identify different portions of cloudiness, Tir=240K which roughly defines the extent of all cloudiness associated with the MCS, and Tir=220K which indicates the presence of deep convection. It is shown that the IR clustering technique can be used as a simple alternative to identify the actual portion of convective and stratiform rainfall.

Effective application of optical sensing technology for sustainable liquid level sensing and rainfall measurement

NASA Astrophysics Data System (ADS)

Afzal, Muhammad Hassan Bin

2015-05-01

Rainfall measurement is performed on regular basis to facilitate effectively the weather stations and local inhabitants. Different types of rain gauges are available with different measuring principle for rainfall measurement. In this research work, a novel optical rain sensor is designed, which precisely calculate the rainfall level according to rainfall intensity. This proposed optical rain sensor model introduced in this paper, which is basically designed for remote sensing of rainfall and it designated as R-ORMS (Remote Optical Rainfall Measurement sensor). This sensor is combination of some improved method of tipping bucket rain gauge and most of the optical hydreon rain sensor's principle. This optical sensor can detect the starting time and ending time of rain, rain intensity and rainfall level. An infrared beam from Light Emitting Diode (LED) through powerful convex lens can accurately determines the diameter of each rain drops by total internal reflection principle. Calculations of these accumulative results determine the rain intensity and rainfall level. Accurate rainfall level is determined by internal optical LED based sensor which is embedded in bucket wall. This internal sensor is also following the total internal reflection (TIR) principle and the Fresnel's law. This is an entirely novel design of optical sensing principle based rain sensor and also suitable for remote sensing rainfall level. The performance of this proposed sensor has been comprehensively compared with other sensors with similar attributes and it showed better and sustainable result. Future related works have been proposed at the end of this paper, to provide improved and enhanced performance of proposed novel rain sensor.

The extraordinary radar echoes from Europa, Ganymede, and Callisto: A geological perspective

USGS Publications Warehouse

Ostro, S.J.; Shoemaker, E.M.

1990-01-01

This outline of plausible geologic explanations for the icy Galilean satellites' radar properties takes into consideration electromagnetic scattering models for the echoes, available empirical and theoretical information about regolith formation, and ice physics. The strange radar signatures arise because (1) ice is electrically different from silicates and/or (2) icy regoliths contain bulk-density (and hence refractive-index) structures absent within silicate regoliths. Ice's relatively high radar-frequency transparency compared with that of silicates permits longer photon path lengths, deeper radar sounding, and a greater number of scattering events. Consequently, scattering mechanisms that cannot contribute significantly to lunar echoes can dominate icy-satellite echoes. Possible phenomena unique to icy regoliths include (1) smoothing out of discontinuities between solid ejecta fragments and more porous surroundings under the action of thermal annealing to form refraction-scattering (RS) "lenses" and (2) formation of density enhancements in the shape of crater floors that result in RS and/or total internal reflection (TIR). In either case, high-order multiple scattering is more likely to be responsible for the echoes than low-order scattering. Radar/radio observations can constrain the order of the scattering and the scale of the structures responsible for the echoes but might not determine whether TIR or RS dominates the scattering. Multiwavelength investigations of the degree of correlation between radar properties and geologic terrain type should prove most useful, because inter- and intrasatellite variations in radar properties probably correspond to variations in ice purity, regolith thickness, and regolith thermal history and age. ?? 1990.

Genome plasticity in Streptomyces: identification of 1 Mb TIRs in the S. coelicolor A3(2) chromosome.

PubMed

Weaver, David; Karoonuthaisiri, Nitsara; Tsai, Hsiu-Hwei; Huang, Chih-Hung; Ho, Mai-Lan; Gai, Shuning; Patel, Kedar G; Huang, Jianqiang; Cohen, Stanley N; Hopwood, David A; Chen, Carton W; Kao, Camilla M

2004-03-01

The chromosomes of several widely used laboratory derivatives of Streptomyces coelicolor A3(2) were found to have 1.06 Mb inverted repeat sequences at their termini (i.e. long-terminal inverted repeats; L-TIRs), which are 50 times the length of the 22 kb TIRs of the sequenced S. coelicolor strain M145. The L-TIRs include 1005 annotated genes and increase the overall chromosome size to 9.7 Mb. The 1.06 Mb L-TIRs are the longest reported thus far for an actinomycete, and are proposed to represent the chromosomal state of the original soil isolate of S. coelicolor A3(2). S. coelicolor A3(2), M600 and J1501 possess L-TIRs, whereas approximately half the examined early mutants of A3(2) generated by ultraviolet (UV) or X-ray mutagenesis have truncated their TIRs to the 22 kb length. UV radiation was found to stimulate L-TIR truncation. Two copies of a transposase gene (SCO0020) flank 1.04 Mb of DNA in the right L-TIR, and recombination between them appears to generate strains containing short TIRs. This TIR reduction mechanism may represent a general strategy by which transposable elements can modulate the structure of chromosome ends. The presence of L-TIRs in certain S. coelicolor strains represents a major chromosomal alteration in strains previously thought to be genetically similar.

Striking structural dynamism and nucleotide sequence variation of the transposon Galileo in the genome of Drosophila mojavensis

PubMed Central

2013-01-01

Background Galileo is a transposable element responsible for the generation of three chromosomal inversions in natural populations of Drosophila buzzatii. Although the most characteristic feature of Galileo is the long internally-repetitive terminal inverted repeats (TIRs), which resemble the Drosophila Foldback element, its transposase-coding sequence has led to its classification as a member of the P-element superfamily (Class II, subclass 1, TIR order). Furthermore, Galileo has a wide distribution in the genus Drosophila, since it has been found in 6 of the 12 Drosophila sequenced genomes. Among these species, D. mojavensis, the one closest to D. buzzatii, presented the highest diversity in sequence and structure of Galileo elements. Results In the present work, we carried out a thorough search and annotation of all the Galileo copies present in the D. mojavensis sequenced genome. In our set of 170 Galileo copies we have detected 5 Galileo subfamilies (C, D, E, F, and X) with different structures ranging from nearly complete, to only 2 TIR or solo TIR copies. Finally, we have explored the structural and length variation of the Galileo copies that point out the relatively frequent rearrangements within and between Galileo elements. Different mechanisms responsible for these rearrangements are discussed. Conclusions Although Galileo is a transposable element with an ancient history in the D. mojavensis genome, our data indicate a recent transpositional activity. Furthermore, the dynamism in sequence and structure, mainly affecting the TIRs, suggests an active exchange of sequences among the copies. This exchange could lead to new subfamilies of the transposon, which could be crucial for the long-term survival of the element in the genome. PMID:23374229

Striking structural dynamism and nucleotide sequence variation of the transposon Galileo in the genome of Drosophila mojavensis.

PubMed

Marzo, Mar; Bello, Xabier; Puig, Marta; Maside, Xulio; Ruiz, Alfredo

2013-02-04

Galileo is a transposable element responsible for the generation of three chromosomal inversions in natural populations of Drosophila buzzatii. Although the most characteristic feature of Galileo is the long internally-repetitive terminal inverted repeats (TIRs), which resemble the Drosophila Foldback element, its transposase-coding sequence has led to its classification as a member of the P-element superfamily (Class II, subclass 1, TIR order). Furthermore, Galileo has a wide distribution in the genus Drosophila, since it has been found in 6 of the 12 Drosophila sequenced genomes. Among these species, D. mojavensis, the one closest to D. buzzatii, presented the highest diversity in sequence and structure of Galileo elements. In the present work, we carried out a thorough search and annotation of all the Galileo copies present in the D. mojavensis sequenced genome. In our set of 170 Galileo copies we have detected 5 Galileo subfamilies (C, D, E, F, and X) with different structures ranging from nearly complete, to only 2 TIR or solo TIR copies. Finally, we have explored the structural and length variation of the Galileo copies that point out the relatively frequent rearrangements within and between Galileo elements. Different mechanisms responsible for these rearrangements are discussed. Although Galileo is a transposable element with an ancient history in the D. mojavensis genome, our data indicate a recent transpositional activity. Furthermore, the dynamism in sequence and structure, mainly affecting the TIRs, suggests an active exchange of sequences among the copies. This exchange could lead to new subfamilies of the transposon, which could be crucial for the long-term survival of the element in the genome.

The MEDA's Radiometer TIRS for the MARS2020 Mission

NASA Astrophysics Data System (ADS)

Pérez Izquierdo, Joel; Sebastián Martínez, Eduardo; Bravo, Andrés; Ferrándiz, Ricardo; Ramos, Miguel; Martínez, Germán; Rodríguez Manfredi, Jose Antonio

2016-10-01

The TIRS (Thermal InfraRed Sensor) instrument is one of the payloads of NASA MARS2020 mission, that is expected to take off in 2020, and is designed to operate for at least three Martian years on surface. The TIRS is part of the Mars Environmental Dynamics Analyzer (MEDA), formed for other environmental sensors, which will be placed in the MARS2020 Rover, and is been developing by the Spanish Center of Astrobiology (CAB).The main objectives of MEDA's Thermal InfraRed Sensor are:-Characterize the net radiative forcing (within 10%), and constrain the conductive forcing at the local surface and near-surface atmosphere.-Record the surface skin temperature and the UV-VIS-NIR irradiance solar flux at an accuracy of [10%] at full range of the atmosphere.TIRS design has heritage from GTS-REMS on the Mars Science Laboratory, in the Curiosity Rover. The aim of the instrument is to measure the radiative flux emitted from the Martian surface, sky and the CO2 atmosphere using five thermopiles sensors in four wavelength bands, model TS100 provided by IPHT (Institute of Photonic Technology, Jena, Germany). The TIRS has three downward pointing thermopiles to measure the IR fluxes emitted by the surface, separating brightness surface temperature from emissivity and surface reflected upward short wave radiation, using the thermopiles IR3 (0.3-3 µm), IR4 (6.5-inf µm), IR5 (8-14 µm). Additionally, it has two more thermopiles pointing to the sky, the thermopiles IR1 (6.5-inf µm) and IR2 (14.5-15.5 µm), which captures the downward fluxes of thermal infrared radiation and air temperature nearby the sensor.Thermopiles are accommodated inside a mechanical assembly that is designed to ensure a low thermal gradient. This assembly also accommodates a calibration plate, aimed to intercept part of the thermopiles FOV, and capable to do an in-flight recalibration.

Evaluation of airborne thermal-infrared image data for monitoring aquatic habitats and cultural resources within the Grand Canyon

USGS Publications Warehouse

Davis, Philip A.

2002-01-01

This study examined thermal-infrared (TIR) image data acquired using the airborne Advanced Thematic Mapper (ATM) sensor in the afternoon of July 25th, 2000 over a portion of the Colorado River corridor to determine the capability of these 100-cm resolution data to address some biologic and cultural resource requirements for GCMRC. The requirements investigated included the mapping of warm backwaters that may serve as fish habitats and the detection (and monitoring) of archaeological structures and natural springs that occur on land. This report reviews the procedure for calibration of the airborne TIR data to obtain surface water temperatures and shows the results for various river reaches within the acquired river corridor. With respect to mapping warm backwater areas, our results show that TIR data need to be acquired with a gain setting that optimizes the range of temperatures found within the water to increase sensitivity of the resulting data to a level of 0.1 °C and to reduce scan-line noise. Data acquired within a two-hour window around maximum solar heating (1:30 PM) is recommended to provide maximum solar heating of the water and to minimize cooling effects of late-afternoon shadows. Ground-truth data within the temperature range of the warm backwaters are necessary for calibration of the TIR data. The ground-truth data need to be collected with good locational accuracy. The derived water-temperature data provide the capability for rapid, wide-area mapping of warm-water fish habitats using a threshold temperature for such habitats. The collected daytime TIR data were ineffective in mapping (detecting) both archaeological structures and natural springs (seeps). The inability of the daytime TIR data to detect archaeological structures is attributed to the low thermal sensitivity (0.3 °C) of the collected data. The detection of subtle thermal differences between geologic materials requires sensitivities of at least 0.1 °C, which can be obtained by most TIR sensors using an appropriate gain setting. Simultaneous data collection for both land and water purposes can be achieved using sensors that collect TIR data in two separate channels, each channel using a gain setting most appropriate for land or water. The detection of archaeological structures and natural water seeps would also be improved by collection of data after sunset, which would require a separate data acquisition from that providing surface water temperature data and therefore additional cost. At this point, the cost for acquiring TIR data is quite high ($620/river-km) compared to the potential benefits of the data, unless reflected-wavelength data are also collected that can satisfy other GCMRC protocol requirements (such as mapping riparian vegetation). This is especially true if multiple data acquisitions are required during the year for temporal analyses of backwater areas. The cost for these data cannot be totally mitigated by its ability to partly replace the need for ground surveys of backwaters because calibration of the TIR data will require some ground-truth data from warm backwater areas (in addition to low-temperature main-stem data). However, the airborne data can provide a product that cannot be approached by ground surveys, that being an instantaneous (2 hour) map of surface water temperature over a 160-km stretch of the Grand Canyon.

Short non-coding RNAs as bacteria species identifiers detected by surface plasmon resonance enhanced common path interferometry

NASA Astrophysics Data System (ADS)

Greef, Charles; Petropavlovskikh, Viatcheslav; Nilsen, Oyvind; Khattatov, Boris; Plam, Mikhail; Gardner, Patrick; Hall, John

2008-04-01

Small non-coding RNA sequences have recently been discovered as unique identifiers of certain bacterial species, raising the possibility that they can be used as highly specific Biowarfare Agent detection markers in automated field deployable integrated detection systems. Because they are present in high abundance they could allow genomic based bacterial species identification without the need for pre-assay amplification. Further, a direct detection method would obviate the need for chemical labeling, enabling a rapid, efficient, high sensitivity mechanism for bacterial detection. Surface Plasmon Resonance enhanced Common Path Interferometry (SPR-CPI) is a potentially market disruptive, high sensitivity dual technology that allows real-time direct multiplex measurement of biomolecule interactions, including small molecules, nucleic acids, proteins, and microbes. SPR-CPI measures differences in phase shift of reflected S and P polarized light under Total Internal Reflection (TIR) conditions at a surface, caused by changes in refractive index induced by biomolecular interactions within the evanescent field at the TIR interface. The measurement is performed on a microarray of discrete 2-dimensional areas functionalized with biomolecule capture reagents, allowing simultaneous measurement of up to 100 separate analytes. The optical beam encompasses the entire microarray, allowing a solid state detector system with no scanning requirement. Output consists of simultaneous voltage measurements proportional to the phase differences resulting from the refractive index changes from each microarray feature, and is automatically processed and displayed graphically or delivered to a decision making algorithm, enabling a fully automatic detection system capable of rapid detection and quantification of small nucleic acids at extremely sensitive levels. Proof-of-concept experiments on model systems and cell culture samples have demonstrated utility of the system, and efforts are in progress for full development and deployment of the device. The technology has broad applicability as a universal detection platform for BWA detection, medical diagnostics, and drug discovery research, and represents a new class of instrumentation as a rapid, high sensitivity, label-free methodology.

Mapping temperature and radiant geothermal heat flux anomalies in the Yellowstone geothermal system using ASTER thermal infrared data

USGS Publications Warehouse

Vaughan, R. Greg; Lowenstern, Jacob B.; Keszthelyi, Laszlo P.; Jaworowski, Cheryl; Heasler, Henry

2012-01-01

The purpose of this work was to use satellite-based thermal infrared (TIR) remote sensing data to measure, map, and monitor geothermal activity within the Yellowstone geothermal area to help meet the missions of both the U.S. Geological Survey Yellowstone Volcano Observatory and the Yellowstone National Park Geology Program. Specifically, the goals were to: 1) address the challenges of remotely characterizing the spatially and temporally dynamic thermal features in Yellowstone by using nighttime TIR data from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and 2) estimate the temperature, geothermal radiant emittance, and radiant geothermal heat flux (GHF) for Yellowstone’s thermal areas (both Park wide and for individual thermal areas). ASTER TIR data (90-m pixels) acquired at night during January and February, 2010, were used to estimate surface temperature, radiant emittance, and radiant GHF from all of Yellowstone’s thermal features, produce thermal anomaly maps, and update field-based maps of thermal areas. A background subtraction technique was used to isolate the geothermal component of TIR radiance from thermal radiance due to insolation. A lower limit for the Yellowstone’s total radiant GHF was established at ~2.0 GW, which is ~30-45% of the heat flux estimated through geochemical (Cl-flux) methods. Additionally, about 5 km2 was added to the geodatabase of mapped thermal areas. This work provides a framework for future satellite-based thermal monitoring at Yellowstone as well as exploration of other volcanic / geothermal systems on a global scale.

Advanced Systems Map, Monitor, and Manage Earth's Resources

NASA Technical Reports Server (NTRS)

2007-01-01

SpecTIR LLC, headquartered in Reno, Nevada, is recognized for innovative sensor design, on-demand hyperspectral data collection, and image-generating products for business, academia, and national and international governments. SpecTIR's current vice president of business development has brought a wealth of NASA-related research experience to the company, as the former principal investigator on a NASA-sponsored hyperspectral crop-imaging project. This project, made possible through a Small Business Technology Transfer (STTR) contract with Goddard Space Flight Center, aimed to enhance airborne hyperspectral sensing and ground-truthing means for crop inspection in the Mid-Atlantic region of the United States. Areas of application for such technology include precision farming and irrigation; oil, gas, and mineral exploration; pollution and contamination monitoring; wetland and forestry characterization; water quality assessment; and submerged aquatic vegetation mapping. Today, SpecTIR maintains its relationship with Goddard through programs at the University of Maryland in College Park, Maryland, and at the U.S. Department of Agriculture campus in Beltsville, Maryland. Additionally, work continues on the integration of hyperspectral data with LIDAR systems and other commercial-off-the-shelf technologies.

THz polariton laser using an intracavity Mg:LiNbO₃ crystal with protective Teflon coating.

PubMed

Ortega, Tiago A; Pask, Helen M; Spence, David J; Lee, Andrew J

2017-02-20

An enhancement in the performance of a THz polariton laser based on an intracavity magnesium-doped lithium niobate crystal (Mg:LiNbO₃) in surface-emitted (SE) configuration is demonstrated resulting from the deposition of a protective Teflon coating on the total internal reflection surface of the crystal. In this cavity geometry the resonating fields undergo total internal reflection (TIR) inside the lithium niobate, and laser damage to that surface can be a limiting factor in performance. The protective layer prevents laser damage to the crystal surface, enabling higher pump power, yielding higher THz output power and wider frequency tuning range. With the unprotected crystal, narrow-band THz output tunable from 1.50 to 2.81 THz was produced, with maximum average output power of 20.1 µW at 1.76 THz for 4 W diode pump power (limited by laser damage to the crystal). With the Teflon coating, no laser damage to the crystal was observed, and the system produced narrow-band THz output tunable from 1.46 to 3.84 THz, with maximum average output power of 56.8 µW at 1.76 THz for 6.5 W diode pump power. This is the highest average output power and the highest diode-to-terahertz conversion efficiency ever reported for an intracavity terahertz polariton laser.

Distribution of hydrothermally altered rocks in the Reko Diq, Pakistan mineralized area based on spectral analysis of ASTER data

USGS Publications Warehouse

Rowan, L.C.; Schmidt, R.G.; Mars, J.C.

2006-01-01

The Reko Diq, Pakistan mineralized study area, approximately 10??km in diameter, is underlain by a central zone of hydrothermally altered rocks associated with Cu-Au mineralization. The surrounding country rocks are a variable mixture of unaltered volcanic rocks, fluvial deposits, and eolian quartz sand. Analysis of 15-band Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data of the study area, aided by laboratory spectral reflectance and spectral emittance measurements of field samples, shows that phyllically altered rocks are laterally extensive, and contain localized areas of argillically altered rocks. In the visible through shortwave-infrared (VNIR + SWIR) phyllically altered rocks are characterized by Al-OH absorption in ASTER band 6 because of molecular vibrations in muscovite, whereas argillically altered rocks have an absorption feature in band 5 resulting from alunite. Propylitically altered rocks form a peripheral zone and are present in scattered exposures within the main altered area. Chlorite and muscovite cause distinctive absorption features at 2.33 and 2.20????m, respectively, although less intense 2.33????m absorption is also present in image spectra of country rocks. Important complementary lithologic information was derived by analysis of the spectral emittance data in the 5 thermal-infrared (TIR) bands. Silicified rocks were not distinguished in the 9 VNIR + SWIR bands because of the lack of diagnostic spectral absorption features in quartz in this wavelength region. Quartz-bearing surficial deposits, as well as hydrothermally silicified rocks, were mapped in the TIR bands by using a band 13/band 12 ratio image, which is sensitive to the intensity of the quartz reststrahlen feature. Improved distinction between the quartzose surficial deposits and silicified bedrock was achieved by using matched-filter processing with TIR image spectra for reference. ?? 2006 Elsevier Inc. All rights reserved.

The TIR domain of TIR-NB-LRR resistance proteins is a signaling domain involved in cell death induction.

PubMed

Swiderski, Michal R; Birker, Doris; Jones, Jonathan D G

2009-02-01

In plants, the TIR (toll interleukin 1 receptor) domain is found almost exclusively in nucleotide-binding (NB) leucine-rich repeat resistance proteins and their truncated homologs, and has been proposed to play a signaling role during resistance responses mediated by TIR containing R proteins. Transient expression in Nicotiana benthamiana leaves of "TIR + 80", the RPS4 truncation without the NB-ARC domain, leads to EDS1-, SGT1-, and HSP90-dependent cell death. Transgenic Arabidopsis plants expressing the RPS4 TIR+80 from either dexamethasone or estradiol-inducible promoters display inducer-dependent cell death. Cell death is also elicited by transient expression of similarly truncated constructs from two other R proteins, RPP1A and At4g19530, but is not elicited by similar constructs representing RPP2A and RPP2B proteins. Site-directed mutagenesis of the RPS4 TIR domain identified many loss-of-function mutations but also revealed several gain-of function substitutions. Lack of cell death induction by the E160A substitution suggests that amino acids outside of the TIR domain contribute to cell death signaling in addition to the TIR domain itself. This is consistent with previous observations that the TIR domain itself is insufficient to induce cell death upon transient expression.

Chasing the TIRS ghosts: calibrating the Landsat 8 thermal bands

NASA Astrophysics Data System (ADS)

Schott, John R.; Gerace, Aaron; Raqueno, Nina; Ientilucci, Emmett; Raqueno, Rolando; Lunsford, Allen W.

2014-10-01

The Thermal Infrared Sensor (TIRS) on board Landsat 8 has exhibited a number of anomalous characteristics that have made it difficult to calibrate. These anomalies include differences in the radiometric appearance across the blackbody pre- and post-launch, variations in the cross calibration ratios between detectors that overlap on adjacent arrays (resulting in banding) and bias errors in the absolute calibration that can change spatially/temporally. Several updates to the TIRS calibration procedures were made in the months after launch to attempt to mitigate the impact of these anomalies on flat fielding (cosmetic removal of banding and striping) and mean level bias correction. As a result, banding and striping variations have been reduced but not eliminated and residual bias errors in band 10 should be less than 2 degrees for most targets but can be significantly more in some cases and are often larger in band 11. These corrections have all been essentially ad hoc without understanding or properly accounting for the source of the anomalies, which were, at the time unknown. This paper addresses the procedures that have been undertaken to; better characterize the nature of these anomalies, attempt to identify the source(s) of the anomalies, quantify the phenomenon responsible for them, and develop correction procedures to more effectively remove the impacts on the radiometric products. Our current understanding points to all of the anomalies being the result of internal reflections of energy from outside the target detector's field-of-view, and often outside the telescope field-of-view, onto the target detector. This paper discusses how various members of the Landsat calibration team discovered the clues that led to how; these "ghosts" were identified, they are now being characterized, and their impact can hopefully eventually be corrected. This includes use of lunar scans to generate initial maps of influence regions, use of long path overlap ratios to explore sources of change and use of variations in bias calculated from truth sites to quantify influences from the surround on absolute bias errors.

A novel Toll like receptor with two TIR domains (HcToll-2) is involved in regulation of antimicrobial peptide gene expression of Hyriopsis cumingii.

PubMed

Ren, Qian; Lan, Jiang-Feng; Zhong, Xue; Song, Xiao-Jun; Ma, Fei; Hui, Kai-Min; Wang, Wen; Yu, Xiao-Qiang; Wang, Jin-Xing

2014-07-01

Animal Toll-like receptors (TLRs) are involved in innate immunity. Toll proteins are generally transmembrane proteins. In this study, an atypical Toll-like receptor (HcToll-2) was identified from the triangle-shell pearl mussel Hyriopsis cumingii, which belongs to phylum Mollusca. Unlike the typical Toll like receptors with extracellular leucine-rich repeats (LRRs), transmembrane, and intracellular Toll/interleukin-1 receptor (TIR) domains, HcToll-2 has two homologous TIR domains located at the C-terminal (designated as HcTIR1 and HcTIR2) and lacks a transmembrane domain. Phylogenetic analysis showed that HcTIR1 was clustered with TIR of sea anemone Toll, and HcTIR2 was clustered with TIR of Drosophila Toll. HcToll-2 mRNA could be detected in the hepatopancreas and was upregulated after challenge with Escherichia coli and Staphylococcus aureus. Recombinant HcLRR protein with GST tag could bind to bacteria and also to LPS and PGN. Over-expression of both HcTIR1 and HcTIR2 induced drosomycin genes in Drosophila S2 cells. RNAi analysis showed that HcToll-2 was required for the expression of theromacin, which is a cysteine-rich antimicrobial peptide (AMP) gene. This research is the first report of an atypical Toll-like receptor HcToll-2 involved in antibacterial immunity through induction of AMP expression. Copyright © 2014 Elsevier Ltd. All rights reserved.

SARM1-specific motifs in the TIR domain enable NAD+ loss and regulate injury-induced SARM1 activation.

PubMed

Summers, Daniel W; Gibson, Daniel A; DiAntonio, Aaron; Milbrandt, Jeffrey

2016-10-11

Axon injury in response to trauma or disease stimulates a self-destruction program that promotes the localized clearance of damaged axon segments. Sterile alpha and Toll/interleukin receptor (TIR) motif-containing protein 1 (SARM1) is an evolutionarily conserved executioner of this degeneration cascade, also known as Wallerian degeneration; however, the mechanism of SARM1-dependent neuronal destruction is still obscure. SARM1 possesses a TIR domain that is necessary for SARM1 activity. In other proteins, dimerized TIR domains serve as scaffolds for innate immune signaling. In contrast, dimerization of the SARM1 TIR domain promotes consumption of the essential metabolite NAD + and induces neuronal destruction. This activity is unique to the SARM1 TIR domain, yet the structural elements that enable this activity are unknown. In this study, we identify fundamental properties of the SARM1 TIR domain that promote NAD + loss and axon degeneration. Dimerization of the TIR domain from the Caenorhabditis elegans SARM1 ortholog TIR-1 leads to NAD + loss and neuronal death, indicating these activities are an evolutionarily conserved feature of SARM1 function. Detailed analysis of sequence homology identifies canonical TIR motifs as well as a SARM1-specific (SS) loop that are required for NAD + loss and axon degeneration. Furthermore, we identify a residue in the SARM1 BB loop that is dispensable for TIR activity yet required for injury-induced activation of full-length SARM1, suggesting that SARM1 function requires multidomain interactions. Indeed, we identify a physical interaction between the autoinhibitory N terminus and the TIR domain of SARM1, revealing a previously unrecognized direct connection between these domains that we propose mediates autoinhibition and activation upon injury.

Combined ellipsometry and refractometry technique for characterisation of liquid crystal based nanocomposites.

PubMed

Warenghem, Marc; Henninot, Jean François; Blach, Jean François; Buchnev, Oleksandr; Kaczmarek, Malgosia; Stchakovsky, Michel

2012-03-01

Spectroscopic ellipsometry is a technique especially well suited to measure the effective optical properties of a composite material. However, as the sample is optically thick and anisotropic, this technique loses its accuracy for two reasons: anisotropy means that two parameters have to be determined (ordinary and extraordinary indices) and optically thick means a large order of interference. In that case, several dielectric functions can emerge out of the fitting procedure with a similar mean square error and no criterion to discriminate the right solution. In this paper, we develop a methodology to overcome that drawback. It combines ellipsometry with refractometry. The same sample is used in a total internal reflection (TIR) setup and in a spectroscopic ellipsometer. The number of parameters to be determined by the fitting procedure is reduced in analysing two spectra, the correct final solution is found by using the TIR results both as initial values for the parameters and as check for the final dielectric function. A prefitting routine is developed to enter the right initial values in the fitting procedure and so to approach the right solution. As an example, this methodology is used to analyse the optical properties of BaTiO(3) nanoparticles embedded in a nematic liquid crystal. Such a methodology can also be used to analyse experimentally the validity of the mixing laws, since ellipsometry gives the effective dielectric function and thus, can be compared to the dielectric function of the components of the mixture, as it is shown on the example of BaTiO(3)/nematic composite.

Label-free in vitro prostate cancer cell detection via photonic-crystal biosensor

NASA Astrophysics Data System (ADS)

DeLuna, Frank; Ding, XiaoFei; Sagredo, Ismael; Bustamante, Gilbert; Sun, Lu-Zhe; Ye, Jing Yong

2018-02-01

Prostate-specific antigen (PSA) biomarker assays are the current clinical method for mass screening of prostate cancer. However, high false-positive rates are often reported due to PSA's low specificity, leading to an urgent need for the development of a more specific detection system independent of PSA levels. In our previous research, we demonstrated the feasibility of using cellular refractive indices (RI) as a unique contrast parameter to accomplish label-free detection of prostate cancer cells via variance testing, but were unable to determine if a specific cell was cancerous or noncancerous. In this paper, we report the use of our Photonic-Crystal biosensor in a Total-Internal-Reflection (PC-TIR) configuration to construct a label-free imaging system, which allows for the detection of individual prostate cancer cells utilizing cellular RI as the only contrast parameter. Noncancerous prostate (BPH-1) cells and prostate cancer (PC-3) cells were mixed at varied ratios and measured concurrently. Additionally, we isolated and induced PC-3 cells to undergo epithelial-mesenchymal transition (EMT) by exposing these cells to soluble factors such as TGF-β1. The biophysical characteristics of the cellular RI were quantified extensively in comparison to non-induced PC-3 cells as well as BPH-1 cells. EMT is a crucial mechanism for the invasion and metastasis of epithelial tumors characterized by the loss of cell-cell adhesion and increased cell mobility. Our study shows promising clinical potential in utilizing the PC-TIR biosensor imaging system to not only detect prostate cancer cells, but also evaluate prostate cancer progression.

Separating vegetation and soil temperature using airborne multiangular remote sensing image data

NASA Astrophysics Data System (ADS)

Liu, Qiang; Yan, Chunyan; Xiao, Qing; Yan, Guangjian; Fang, Li

2012-07-01

Land surface temperature (LST) is a key parameter in land process research. Many research efforts have been devoted to increase the accuracy of LST retrieval from remote sensing. However, because natural land surface is non-isothermal, component temperature is also required in applications such as evapo-transpiration (ET) modeling. This paper proposes a new algorithm to separately retrieve vegetation temperature and soil background temperature from multiangular thermal infrared (TIR) remote sensing data. The algorithm is based on the localized correlation between the visible/near-infrared (VNIR) bands and the TIR band. This method was tested on the airborne image data acquired during the Watershed Allied Telemetry Experimental Research (WATER) campaign. Preliminary validation indicates that the remote sensing-retrieved results can reflect the spatial and temporal trend of component temperatures. The accuracy is within three degrees while the difference between vegetation and soil temperature can be as large as twenty degrees.

Synegies Between Visible/Near-Infrared Imaging Spectrometry and the Thermal Infrared in an Urban Environment: An Evaluation of the Hyperspectral Infrared Imager (HYSPIRI) Mission

NASA Technical Reports Server (NTRS)

Roberts, Dar A.; Quattrochi, Dale A.; Hulley, Glynn C.; Hook, Simon J.; Green, Robert O.

2012-01-01

A majority of the human population lives in urban areas and as such, the quality of urban environments is becoming increasingly important to the human population. Furthermore, these areas are major sources of environmental contaminants and sinks of energy and materials. Remote sensing provides an improved understanding of urban areas and their impacts by mapping urban extent, urban composition (vegetation and impervious cover fractions), and urban radiation balance through measures of albedo, emissivity and land surface temperature (LST). Recently, the National Research Council (NRC) completed an assessment of remote sensing needs for the next decade (NRC, 2007), proposing several missions suitable for urban studies, including a visible, near-infrared and shortwave infrared (VSWIR) imaging spectrometer and a multispectral thermal infrared (TIR) instrument called the Hyperspectral Infrared Imagery (HyspIRI). In this talk, we introduce the HyspIRI mission, focusing on potential synergies between VSWIR and TIR data in an urban area. We evaluate potential synergies using an Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and MODIS-ASTER (MASTER) image pair acquired over Santa Barbara, United States. AVIRIS data were analyzed at their native spatial resolutions (7.5m VSWIR and 15m TIR), and aggregated 60 m spatial resolution similar to HyspIRI. Surface reflectance was calculated using ACORN and a ground reflectance target to remove atmospheric and sensor artifacts. MASTER data were processed to generate estimates of spectral emissivity and LST using Modtran radiative transfer code and the ASTER Temperature Emissivity Separation algorithm. A spectral library of common urban materials, including urban vegetation, roofs and roads was assembled from combined AVIRIS and field-measured reflectance spectra. LST and emissivity were also retrieved from MASTER and reflectance/emissivity spectra for a subset of urban materials were retrieved from co-located MASTER and AVIRIS pixels. Fractions of Impervious, Soil, Green Vegetation (GV) and Non-photosynthetic Vegetation (NPV), were estimated using Multiple Endmember Spectral Mixture Analysis (MESMA) applied to AVIRIS data at 7.5, 15 and 60 m spatial scales. Surface energy parameters, including albedo, vegetation cover fraction, broadband emissivity and LST were also determined for urban and natural land-cover classes in the region. Fractions were validated using 1m digital photography.

The critical need for moderate to high resolution thermal infrared data for volcanic hazard mitigation and process monitoring from the micron to the kilometer scale

NASA Astrophysics Data System (ADS)

Ramsey, M. S.

2006-12-01

The use of satellite thermal infrared (TIR) data to rapidly detect and monitor transient thermal events such as volcanic eruptions commonly relies on datasets with coarse spatial resolution (1.0 - 8.0 km) and high temporal resolution (minutes to hours). However, the growing need to extract physical parameters at meter to sub- meter scales requires data with improved spectral and spatial resolution. Current orbital systems such as the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) and the Landsat Enhanced Thematic Mapper plus (ETM+) can provide TIR data ideal for this type of scientific analysis, assessment of hazard risks, and to perform smaller scale monitoring; but at the expense of rapid repeat observations. A potential solution to this apparent conflict is to combine the spatial and temporal scales of TIR data in order to provide the benefits of rapid detection together with the potential of detailed science return. Such a fusion is now in place using ASTER data collected in the north Pacific region to monitor the Aleutian and Kamchatka arcs. However, this approach of cross-instrument/cross-satellite monitoring is in jeopardy with the lack of planned moderate resolution TIR instruments following ETM+ and ASTER. This data collection program is also being expanded globally, and was used in 2006 to assist in the response and monitoring of the volcanic crisis at Merapi Volcano in Indonesia. Merapi Volcano is one of the most active volcanoes in the country and lies in central Java north of the densely-populated city of Yogyakarta. Pyroclastic flows and lahars are common following the growth and collapse of the summit lava dome. These flows can be fatal and were the major hazard concern during a period of renewed activity beginning in April 2006. Lava at the surface was confirmed on 25 April and ASTER was tasked with an urgent request observation, subsequently collecting data on 26 April (daytime) and 28 April (nighttime). The TIR revealed thermally-elevated pixels (max = 25.9 C) clustered near the summit with a lesser anomaly (max = 15.5 C) approximately 650 m to the southwest and down slope from the summit. Such small-scale and low-grade thermal features confirmed the increased activity state of the volcano and were only made possible with the moderate spatial, spectral, and radiometric resolution of ASTER. ASTER continued to collect data for the next 12 weeks tracking the progress of large scale pyroclastic flows, the growth of the lava dome, and the path of ash-rich plumes. Data from these observations were reported world-wide and used for evacuation and hazard planning purposes. With the pending demise of such TIR data from orbit, research is also focused on the use of handheld TIR instruments such as the forward-looking infrared radiometer (FLIR) camera. These instruments provide the highest spatial resolution in-situ TIR data and have been used to observe numerous volcanic phenomena and quantitatively model others (e.g., the rise of the magma body preceding the eruption of Mt. St. Helens Volcano; the changes on the lava dome at Bezymianny Volcano; the behavior of basalt crusts during pahoehoe flow inflation). Studies such as these confirm the utility and importance of future moderate to high resolution TIR data in order to understand volcanic processes and their accompanying hazards.

The Mars Exploration Rover (MER) Transverse Impulse Rocket System (TIRS)

NASA Technical Reports Server (NTRS)

SanMartin, Alejandro Miguel; Bailey, Erik

2005-01-01

In a very short period of time the MER project successfully developed and tested a system, TIRS/DIMES, to improve the probability of success in the presence of large Martian winds. The successful development of TIRS/DIMES played a big role in the landing site selection process by enabling the landing of Spirit on Gusev crater, a site of very high scientific interest but with known high wind conditions. The performance of TIRS by Spirit at Gusev Crater was excellent. The velocity prediction error was small and Big TIRS was fired reducing the impact horizontal velocity from approximately 23 meters per second to approximately 11 meters per second, well within the airbag capabilities. The performance of TIRS by Opportunity at Meridiani was good. The velocity prediction error was rather large (approximately 6 meters per second, a less than 2 sigma value, but TIRS did not fire which was the correct action.

Estimation of Multiple Parameters over Vegetated Surfaces by Integrating Optical-Thermal Remote Sensing Observations

NASA Astrophysics Data System (ADS)

Ma, H.

2016-12-01

Land surface parameters from remote sensing observations are critical in monitoring and modeling of global climate change and biogeochemical cycles. Current methods for estimating land surface parameters are generally parameter-specific algorithms and are based on instantaneous physical models, which result in spatial, temporal and physical inconsistencies in current global products. Besides, optical and Thermal Infrared (TIR) remote sensing observations are usually separated to use based on different models , and the Middle InfraRed (MIR) observations have received little attention due to the complexity of the radiometric signal that mixes both reflected and emitted fluxes. In this paper, we proposed a unified algorithm for simultaneously retrieving a total of seven land surface parameters, including Leaf Area Index (LAI), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), land surface albedo, Land Surface Temperature (LST), surface emissivity, downward and upward longwave radiation, by exploiting remote sensing observations from visible to TIR domain based on a common physical Radiative Transfer (RT) model and a data assimilation framework. The coupled PROSPECT-VISIR and 4SAIL RT model were used for canopy reflectance modeling. At first, LAI was estimated using a data assimilation method that combines MODIS daily reflectance observation and a phenology model. The estimated LAI values were then input into the RT model to simulate surface spectral emissivity and surface albedo. Besides, the background albedo and the transmittance of solar radiation, and the canopy albedo were also calculated to produce FAPAR. Once the spectral emissivity of seven MODIS MIR to TIR bands were retrieved, LST can be estimated from the atmospheric corrected surface radiance by exploiting an optimization method. At last, the upward longwave radiation were estimated using the retrieved LST, broadband emissivity (converted from spectral emissivity) and the downward longwave radiation (modeled by MODTRAN). These seven parameters were validated over several representative sites with different biome type, and compared with MODIS and GLASS product. Results showed that this unified inversion algorithm can retrieve temporally complete and physical consistent land surface parameters with high accuracy.

GOSAT TIR radiometric validation toward simultaneous GHG column and profile observation

NASA Astrophysics Data System (ADS)

Kataoka, F.; Knuteson, R. O.; Kuze, A.; Shiomi, K.; Suto, H.; Saitoh, N.

2015-12-01

The Greenhouse gases Observing SATellite (GOSAT) was launched on January 2009 and continues its operation for more than six years. The thermal and near infrared sensor for carbon observation Fourier-Transform Spectrometer (TANSO-FTS) onboard GOSAT measures greenhouse gases (GHG), such as CO2 and CH4, with wide and high resolution spectra from shortwave infrared (SWIR) to thermal infrared (TIR). This instrument has the advantage of being able to measure simultaneously the same field of view in different spectral ranges. The combination of column-GHG form SWIR band and vertical profile-GHG from TIR band provide better understanding and distribution of GHG, especially in troposphere. This work describes the radiometric validation and sensitivity analysis of TANSO-FTS TIR spectra, especially CO2, atmospheric window and CH4 channels with forward calculation. In this evaluation, we used accurate in-situ dataset of the HIPPO (HIAPER Pole-to-Pole Observation) airplane observation data and GOSAT vicarious calibration and validation campaign data in Railroad Valley, NV. The HIPPO aircraft campaign had taken accurate atmospheric vertical profile dataset (T, RH, O3, CO2, CH4, N2O, CO) approximately pole-to-pole from the surface to the tropopause over the ocean. We implemented these dataset for forward calculation and made the spectral correction model with respect to wavenumber and internal calibration blackbody temperature The GOSAT vicarious calibration campaign have conducted every year since 2009 near summer solstice in Railroad Valley, where high-temperature desert site. In this campaign, we have measured temperature and humidity by a radiosonde and CO2, CH4 and O3 profile by the AJAX airplane at the time of the GOSAT overpass. Sometimes, the GHG profiles over the Railroad Valley show the air mass advection in mid-troposphere depending on upper wind. These advections bring the different concentration of GHG in lower and upper troposphere. Using these cases, we made sensitivity analysis of TANSO-FTS TIR band in troposphere changing in-situ GHG profiles.

SCF(TIR1/AFB)-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism.

PubMed

Baster, Paweł; Robert, Stéphanie; Kleine-Vehn, Jürgen; Vanneste, Steffen; Kania, Urszula; Grunewald, Wim; De Rybel, Bert; Beeckman, Tom; Friml, Jiří

2013-01-23

The distribution of the phytohormone auxin regulates many aspects of plant development including growth response to gravity. Gravitropic root curvature involves coordinated and asymmetric cell elongation between the lower and upper side of the root, mediated by differential cellular auxin levels. The asymmetry in the auxin distribution is established and maintained by a spatio-temporal regulation of the PIN-FORMED (PIN) auxin transporter activity. We provide novel insights into the complex regulation of PIN abundance and activity during root gravitropism. We show that PIN2 turnover is differentially regulated on the upper and lower side of gravistimulated roots by distinct but partially overlapping auxin feedback mechanisms. In addition to regulating transcription and clathrin-mediated internalization, auxin also controls PIN abundance at the plasma membrane by promoting their vacuolar targeting and degradation. This effect of elevated auxin levels requires the activity of SKP-Cullin-F-box(TIR1/AFB) (SCF(TIR1/AFB))-dependent pathway. Importantly, also suboptimal auxin levels mediate PIN degradation utilizing the same signalling pathway. These feedback mechanisms are functionally important during gravitropic response and ensure fine-tuning of auxin fluxes for maintaining as well as terminating asymmetric growth.

Stream Temperature Estimation From Thermal Infrared Images

NASA Astrophysics Data System (ADS)

Handcock, R. N.; Kay, J. E.; Gillespie, A.; Naveh, N.; Cherkauer, K. A.; Burges, S. J.; Booth, D. B.

2001-12-01

Stream temperature is an important water quality indicator in the Pacific Northwest where endangered fish populations are sensitive to elevated water temperature. Cold water refugia are essential for the survival of threatened salmon when events such as the removal of riparian vegetation result in elevated stream temperatures. Regional assessment of stream temperatures is limited by sparse sampling of temperatures in both space and time. If critical watersheds are to be properly managed it is necessary to have spatially extensive temperature measurements of known accuracy. Remotely sensed thermal infrared (TIR) imagery can be used to derive spatially distributed estimates of the skin temperature (top 100 nm) of streams. TIR imagery has long been used to estimate skin temperatures of the ocean, where split-window techniques have been used to compensate for atmospheric affects. Streams are a more complex environment because 1) most are unresolved in typical TIR images, and 2) the near-bank environment of stream corridors may consist of tall trees or hot rocks and soils that irradiate the stream surface. As well as compensating for atmospheric effects, key problems to solve in estimating stream temperatures include both subpixel unmixing and multiple scattering. Additionally, fine resolution characteristics of the stream surface such as evaporative cooling due to wind, and water surface roughness, will effect measurements of radiant skin temperatures with TIR devices. We apply these corrections across the Green River and Yakima River watersheds in Washington State to assess the accuracy of remotely sensed stream surface temperature estimates made using fine resolution TIR imagery from a ground-based sensor (FLIR), medium resolution data from the airborne MASTER sensor, and coarse-resolution data from the Terra-ASTER satellite. We use linear spectral mixture analysis to isolate the fraction of land-leaving radiance originating from unresolved streams. To compensate the data for atmospheric effects we combine radiosonde profiles with a physically based radiative transfer model (MODTRAN) and an in-scene relative correction adapted from the ISAC algorithm. Laboratory values for water emissivities are used as a baseline estimate of stream emissivities. Emitted radiance reflected by trees in the stream near-bank environment is estimated from the height and canopy temperature, using a radiosity model.

The Thermal Infrared Sensor onboard NASA's Mars 2020 Mission

NASA Astrophysics Data System (ADS)

Martinez, G.; Perez-Izquierdo, J.; Sebastian, E.; Ramos, M.; Bravo, A.; Mazo, M.; Rodriguez-Manfredi, J. A.

2017-12-01

NASA's Mars 2020 rover mission is scheduled for launch in July/August 2020 and will address key questions about the potential for life on Mars. The Mars Environmental Dynamics Analyzer (MEDA) is one of the seven instruments onboard the rover [1] and has been designed to assess the environmental conditions across the rover traverse. MEDA will extend the current record of in-situ meteorological measurements at the surface [2] to other locations on Mars. The Thermal InfraRed Sensor (TIRS) [3] is one of the six sensors comprising MEDA. TIRS will use three downward-looking channels to measure (1) the surface skin temperature (with high heritage from the Rover Environmental Monitoring Station onboard the Mars Science Laboratory mission [4]), (2) the upwelling thermal infrared radiation from the surface and (3) the reflected solar radiation at the surface, and two upward-looking channels to measure the (4) downwelling thermal infrared radiation at the surface and (5) the atmospheric temperature. In combination with other MEDA's sensors, TIRS will allow the quantification of the surface energy budget [5] and the determination of key geophysical properties of the terrain such as the albedo and thermal inertia with an unprecedented spatial resolution. Here we present a general description of the TIRS, with focus on its scientific requirements and results from field campaigns showing the performance of the different channels. References:[1] Rodríguez-Manfredi, J. A. et al. (2014), MEDA: An environmental and meteorological package for Mars 2020, LPSC, 45, 2837. [2] Martínez, G.M. et al. (2017), The Modern Near-Surface Martian Climate: A Review of In-situ Meteorological Data from Viking to Curiosity, Space Science Reviews, 1-44. [3] Pérez-Izquierdo, J. et al. (2017), The Thermal Infrared Sensor (TIRS) of the Mars Environmental Dynamics Analyzer (MEDA) Instrument onboard Mars 2020, IEEE. [4] Sebastián, E. et al. (2010), The Rover Environmental Monitoring Station Ground Temperature Sensor: A Pyrometer for Measuring Ground Temperature on Mars," Sensors, vol. 10(10), pp. 9211-9231. [5] Martínez, G. M. et al. (2014), Surface energy budget and thermal inertia at Gale Crater: Calculations from ground-based measurements, J.Geophys. Res. Planets, 119.

Tropospheric Ozone Profiling Using Simulated GEO-CAPE Measurement

NASA Technical Reports Server (NTRS)

Natraj, Vijay; Li, Xiong; Kulawik, Susan; Chance, Kelly; Chatfield, Robert; Edwards, David P .; Eldering, Annmarie; Francis, Gene; Kurosu, Thomas; Pickering, Kenneth;

Tirandamycin biosynthesis is mediated by co-dependent oxidative enzymes

NASA Astrophysics Data System (ADS)

Carlson, Jacob C.; Li, Shengying; Gunatilleke, Shamila S.; Anzai, Yojiro; Burr, Douglas A.; Podust, Larissa M.; Sherman, David H.

2011-08-01

Elucidation of natural product biosynthetic pathways provides important insights into the assembly of potent bioactive molecules, and expands access to unique enzymes able to selectively modify complex substrates. Here, we show full reconstitution, in vitro, of an unusual multi-step oxidative cascade for post-assembly-line tailoring of tirandamycin antibiotics. This pathway involves a remarkably versatile and iterative cytochrome P450 monooxygenase (TamI) and a flavin adenine dinucleotide-dependent oxidase (TamL), which act co-dependently through the repeated exchange of substrates. TamI hydroxylates tirandamycin C (TirC) to generate tirandamycin E (TirE), a previously unidentified tirandamycin intermediate. TirE is subsequently oxidized by TamL, giving rise to the ketone of tirandamycin D (TirD), after which a unique exchange back to TamI enables successive epoxidation and hydroxylation to afford, respectively, the final products tirandamycin A (TirA) and tirandamycin B (TirB). Ligand-free, substrate- and product-bound crystal structures of bicovalently flavinylated TamL oxidase reveal a likely mechanism for the C10 oxidation of TirE.

Studying flow close to an interface by total internal reflection fluorescence cross-correlation spectroscopy: Quantitative data analysis

NASA Astrophysics Data System (ADS)

Schmitz, R.; Yordanov, S.; Butt, H. J.; Koynov, K.; Dünweg, B.

2011-12-01

Total internal reflection fluorescence cross-correlation spectroscopy (TIR-FCCS) has recently [S. Yordanov , Optics ExpressOPEXFF1094-408710.1364/OE.17.021149 17, 21149 (2009)] been established as an experimental method to probe hydrodynamic flows near surfaces, on length scales of tens of nanometers. Its main advantage is that fluorescence occurs only for tracer particles close to the surface, thus resulting in high sensitivity. However, the measured correlation functions provide only rather indirect information about the flow parameters of interest, such as the shear rate and the slip length. In the present paper, we show how to combine detailed and fairly realistic theoretical modeling of the phenomena by Brownian dynamics simulations with accurate measurements of the correlation functions, in order to establish a quantitative method to retrieve the flow properties from the experiments. First, Brownian dynamics is used to sample highly accurate correlation functions for a fixed set of model parameters. Second, these parameters are varied systematically by means of an importance-sampling Monte Carlo procedure in order to fit the experiments. This provides the optimum parameter values together with their statistical error bars. The approach is well suited for massively parallel computers, which allows us to do the data analysis within moderate computing times. The method is applied to flow near a hydrophilic surface, where the slip length is observed to be smaller than 10nm, and, within the limitations of the experiments and the model, indistinguishable from zero.

Dual Assimilation of Microwave and Thermal-Infrared Satellite Observations of Soil Moisture into NLDAS for Improved Drought Monitoring

NASA Astrophysics Data System (ADS)

Hain, C.; Crow, W. T.; Anderson, M. C.; Zhan, X.; Wardlow, B.; Svoboda, M. D.; Mecikalski, J. R.

2011-12-01

Our research group is currently developing an operational data assimilation (DA) system for the optimal assimilation of thermal infrared (TIR) and microwave (MV) soil moisture (SM) and insertion of near real-time green vegetation fraction (GVF) into the Noah land-surface model component of the National Land Data Assimilation System (NLDAS). NLDAS produces the hydrologic products (e.g. soil moisture, evapotranspiration, and runoff) used by NCEP for operational drought monitoring, but these products are sensitive to model input errors in soil texture (affecting infiltration rates) and prescribed precipitation rates. Periodic updates of SM state variables in LSMs achieved by assimilating diagnostic moisture information retrieved using satellite remote sensing have been shown to compensate for model errors and result in improved hydrologic output. The work proposed here will build on a project currently funded under the Climate Test Bed Program entitled "A GOES Thermal-Based Drought Early Warning Index for NIDIS", which is developing an operational TIR SM index (Evaporative Stress Index; ESI) based on maps of the ratio of actual to potential ET (fPET) generated with the Atmosphere-Land Exchange Inverse (ALEXI) surface energy balance algorithm. The research team has demonstrated that diagnostic information about SM and evapotranspiration (ET) from MW and TIR remote sensing can significantly reduce SM drifts in LSMs such as Noah. The two different SM retrievals have been shown to be quite complementary: TIR provides relatively high spatial (down to 100 m) and low temporal resolution (due to cloud cover) retrievals over a wide range of GVF, while MW provides relatively low spatial (25 to 60 km) and high temporal resolution (can retrieve through cloud cover), but only over areas with low GVF. Furthermore, MW retrievals are sensitive to SM only in the first few centimeters of the soil profile, while TIR provides information about SM conditions integrated over the full root-zone, reflected in the observed canopy temperature. The added value of TIR over MW alone is most significant in areas of moderate to dense vegetation cover where MW retrievals have very little sensitivity to SM at any depth. Finally, climatological estimates of GVF currently used in the operational NLDAS are not always representative of observed seasonal and intra-seasonal GVF conditions, especially in regions experiencing drought conditions. A detailed methodology of the assimilation system will be presented along with an analysis of initial results, with an emphasis on comparisons with in-situ SM observations and standard drought metrics.

An improved algorithm for small and cool fire detection using MODIS data: A preliminary study in the southeastern United States

Treesearch

Wanting Wang; John J. Qu; Xianjun Hao; Yongqiang Liu; William T. Sommers

2006-01-01

Traditional fire detection algorithms mainly rely on hot spot detection using thermal infrared (TIR) channels with fixed or contextual thresholds. Three solar reflectance channels (0.65 μm, 0.86 μm, and 2.1 μm) were recently adopted into the MODIS version 4 contextual algorithm to improve the active fire detection. In the southeastern United...

Evaluation of bias in lower and middle tropospheric GOSAT/TANSO-FTS TIR V1.0 CO2 data through comparisons with aircraft and NICAM-TM CO2 data

NASA Astrophysics Data System (ADS)

Saitoh, N.; Hatta, H.; Imasu, R.; Shiomi, K.; Kuze, A.; Niwa, Y.; Machida, T.; Sawa, Y.; Matsueda, H.

2016-12-01

Thermal and Near Infrared Sensor for Carbon Observation (TANSO)-Fourier Transform Spectrometer (FTS) on board the Greenhouse Gases Observing Satellite (GOSAT) has been observing carbon dioxide (CO2) concentrations in several atmospheric layers in the thermal infrared (TIR) band since its launch on 23 January 2009. We have compared TANSO-FTS TIR Version 1 (V1) CO2 data from 2010 to 2012 and CO2 data obtained by the Continuous CO2 Measuring Equipment (CME) installed on several JAL aircraft in the framework of the Comprehensive Observation Network for TRace gases by AIrLiner (CONTRAIL) project to evaluate bias in the TIR CO2 data in the lower and middle troposphere. Here, we have regarded the CME data obtained during the ascent and descent flights over several airports as part of CO2 vertical profiles there. The comparisons showed that the TIR V1 CO2 data had a negative bias against the CME CO2 data; the magnitude of the bias varied depending on season and latitude. We have estimated bias correction values for the TIR V1 lower and middle tropospheric CO2 data in each latitude band from 40°S to 60°N in each season on the basis of the comparisons with the CME CO2 profiles in limited areas over airports, applied the bias correction values to the TIR V1 CO2 data, and evaluated the quality of the bias-corrected TIR CO2 data globally through comparisons with CO2 data taken from the Nonhydrostatic Icosahedral Atmospheric Model (NICAM)-based Transport Model (TM). The bias-corrected TIR CO2 data showed a better agreement with the NICAM-TM CO2 than the original TIR data, which suggests that the bias correction values estimated in the limited areas are basically applicable to global TIR CO2 data. We have compared XCO2 data calculated from both the original and bias-corrected TIR CO2 data with TANSO-FTS SWIR and NICAM-TM XCO2 data; both the TIR XCO2 data agreed with SWIR and NICAM-TM XCO2 data within 1% except over the Sahara desert and strong source and sink regions.

Validation of GOSAT/TANSO-FTS TIR V01.00 CO2 and CH4 products

NASA Astrophysics Data System (ADS)

Saitoh, N.; Kimoto, S.; Sugimura, R.; Imasu, R.; Kawakami, S.; Shiomi, K.; Machida, T.; Sawa, Y.; Matsuda, H.

2014-12-01

Greenhouse Gases Observing Satellite (GOSAT) has been making observations continuously for more than five years since its launch on 23 January 2009. Thermal and Near-infrared Sensor for Carbon Observation Fourier Transform Spectrometer (TANSO-FTS) on board the GOSAT simultaneously observes column abundances and profiles of CO2 and CH4 in the same field of view, from the shortwave infrared (SWIR) and thermal infrared (TIR) bands, respectively. We have just released the latest TIR CO2 and CH4 products, V01.00, to registered researchers. To validate the data quality of the V01.00 TIR CO2 product, we compared the TIR data with CO2 data obtained by Continuous CO2 Measuring Equipment (CME) on board JAL aircraft in Comprehensive Observation Network for Trace gases by Airliner (CONTRAIL) project. The aircraft CO2 data obtained during the level flights were compared with the V01.00 TIR upper tropospheric CO2 data. The CONTRAIL CO2 "profile" data obtained during the ascending and descending flights over several airports were compared with the TIR CO2 profiles. In the profile comparisons, we applied the TIR averaging kernel functions to the coincident CONTRAIL CO2 profiles. The V01.00 upper atmospheric CO2 data agreed to the CONTRAIL level flight CO2 data on average within 0.5-1%. Some TIR CO2 data showed relatively large differences from the nearest aircraft data, which suggests the existence of several problems such as L1B spectral calibration and nighttime cloud detection issues. The TIR V01.00 CO2 profile data from 9 to 13 km showed better agreement to CONTRAIL CO2 data than the a priori. However, the TIR CO2 data at around and below 5 km had low bias of 1-1.5%. The TIR V01.00 CH4 data generally showed reasonable latitudinal distributions as the previous version. In the Antarctic, unexpected high amounts of CH4 were seen in upper troposphere and lower stratosphere in autumn. This is probably because of the problem of simultaneously retrieved ozone concentration.

Robust Satellite Techniques for monitoring earth emitted radiation in the Japanese seismic area by using MTSAT observations in the TIR spectral range

NASA Astrophysics Data System (ADS)

Genzano, Nicola; Filizzola, Carolina; Hattori, Katsumi; Lisi, Mariano; Paciello, Rossana; Pergola, Nicola; Tramutoli, Valerio

2016-04-01

Since eighties, the fluctuations of Earth's thermally emitted radiation, measured by satellite sensors operating in the thermal infrared (TIR) spectral range, have been associated with the complex process of preparation for major earthquakes. But, like other claimed earthquake precursors (seismological, physical, chemical, biological, etc.) they have been for long-time considered with some caution by scientific community. The lack of a rigorous definition of anomalous TIR signal fluctuations and the scarce attention paid to the possibility that other causes (e.g. meteorological) different from seismic activity could be responsible for the observed TIR variations were the main causes of such skepticism. Compared with previously proposed approaches the general change detection approach, named Robust Satellite Techniques (RST), showed good ability to discriminate anomalous TIR signals possibly associated to seismic activity, from the normal variability of TIR signal due to other causes. Thanks to its full exportability on different satellite packages, since 2001 RST has been implemented on TIR images acquired by polar (e.g. NOAA-AVHRR, EOS -MODIS) and geostationary (e.g. MSG-SEVIRI, NOAA-GOES/W, GMS-5/VISSR) satellite sensors, in order to verify the presence (or absence) of TIR anomalies in presence (absence) of earthquakes (with M>4) in different seismogenic areas around the world (e.g. Italy, Greece, Turkey, India, Taiwan, etc.). In this paper, the RST data analysis approach has been implemented on TIR satellite records collected over Japan by the geostationary satellite sensor MTSAT (Multifunctional Transport SATellites) and RETIRA (Robust Estimator of TIR Anomalies) index was used to identify Significant Sequences of TIR Anomalies (SSTAs) in a possible space-time relations with seismic events. Achieved results will be discussed in the perspective of a multi-parametric approach for a time-Dependent Assessment of Seismic Hazard (t-DASH).

Landsat 9: Status and Plans

NASA Technical Reports Server (NTRS)

Markham, Brian L.; Jenstrom, Del; Masek, Jeffrey G.; Dabney, Phil; Pedelty, Jeffrey A.; Barsi, Julia A.; Montanaro, Matthew

2016-01-01

The Landsat 9 mission, currently under development and proceeding towards a targeted launch in late 2020, will be very similar to the Landsat 8 mission, launched in 2013. Like Landsat 8, Landsat 9 is a joint effort between NASA and USGS with two sensors, the Operational Land Imager 2 (OLI-2), essentially a copy of the OLI on Landsat 8 and the Thermal Infrared Sensor 2 (TIRS-2), very similar to the TIRS on Landsat 8. The OLI-2, like OLI, provides 14-bit image data, though for Landsat 9, all 14 bits will be retained and transmitted to the ground. The focal plane modules to be used for OLI-2 were flight spares for OLI and are currently being retested by Ball Aerospace. Results indicate radiometric performance comparable to OLI. The TIRS was a class C instrument, with a 3-year design lifetime, and therefore had limited redundancy. TIRS-2 will be a class B instrument, with a 5-year design lifetime, like OLI (and OLI-2), necessitating design changes to increase redundancy. The stray light and Scene Select Mechanism (SSM) encoder problems observed on orbit with TIRS have also instigated a few design changes to TIRS-2. Stray light analysis and testing have indicated that additional baffles in the TIRS-2 optical system will suppress the out-of-field response. The SSM encoder problems have not been definitively traced to a route cause, though conductive anodic filament growth in the circuit boards is suspected. Improved designs for the encoder are being considered for TIRS-2. The spare Focal Plane Array (FPA) from TIRS is planned for use in TIRS-2; FPA spectral and radiometric performance testing is scheduled for September of this year at NASA's Goddard Space Flight Center.

TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders

PubMed Central

Tarr, D Ellen K; Alexander, Helen M

2009-01-01

Background Plant resistance (R) gene products recognize pathogen effector molecules. Many R genes code for proteins containing nucleotide binding site (NBS) and C-terminal leucine-rich repeat (LRR) domains. NBS-LRR proteins can be divided into two groups, TIR-NBS-LRR and non-TIR-NBS-LRR, based on the structure of the N-terminal domain. Although both classes are clearly present in gymnosperms and eudicots, only non-TIR sequences have been found consistently in monocots. Since most studies in monocots have been limited to agriculturally important grasses, it is difficult to draw conclusions. The purpose of our study was to look for evidence of these sequences in additional monocot orders. Findings Using degenerate PCR, we amplified NBS sequences from four monocot species (C. blanda, D. marginata, S. trifasciata, and Spathiphyllum sp.), a gymnosperm (C. revoluta) and a eudicot (C. canephora). We successfully amplified TIR-NBS-LRR sequences from dicot and gymnosperm DNA, but not from monocot DNA. Using databases, we obtained NBS sequences from additional monocots, magnoliids and basal angiosperms. TIR-type sequences were not present in monocot or magnoliid sequences, but were present in the basal angiosperms. Phylogenetic analysis supported a single TIR clade and multiple non-TIR clades. Conclusion We were unable to find monocot TIR-NBS-LRR sequences by PCR amplification or database searches. In contrast to previous studies, our results represent five monocot orders (Poales, Zingiberales, Arecales, Asparagales, and Alismatales). Our results establish the presence of TIR-NBS-LRR sequences in basal angiosperms and suggest that although these sequences were present in early land plants, they have been reduced significantly in monocots and magnoliids. PMID:19785756

Evaluation of Methods for Coregistration and Fusion of Rpas-Based 3d Point Clouds and Thermal Infrared Images

NASA Astrophysics Data System (ADS)

Hoegner, L.; Tuttas, S.; Xu, Y.; Eder, K.; Stilla, U.

2016-06-01

This paper discusses the automatic coregistration and fusion of 3d point clouds generated from aerial image sequences and corresponding thermal infrared (TIR) images. Both RGB and TIR images have been taken from a RPAS platform with a predefined flight path where every RGB image has a corresponding TIR image taken from the same position and with the same orientation with respect to the accuracy of the RPAS system and the inertial measurement unit. To remove remaining differences in the exterior orientation, different strategies for coregistering RGB and TIR images are discussed: (i) coregistration based on 2D line segments for every single TIR image and the corresponding RGB image. This method implies a mainly planar scene to avoid mismatches; (ii) coregistration of both the dense 3D point clouds from RGB images and from TIR images by coregistering 2D image projections of both point clouds; (iii) coregistration based on 2D line segments in every single TIR image and 3D line segments extracted from intersections of planes fitted in the segmented dense 3D point cloud; (iv) coregistration of both the dense 3D point clouds from RGB images and from TIR images using both ICP and an adapted version based on corresponding segmented planes; (v) coregistration of both image sets based on point features. The quality is measured by comparing the differences of the back projection of homologous points in both corrected RGB and TIR images.

Reduced naphthylphthalamic acid binding in the tir3 mutant of Arabidopsis is associated with a reduction in polar auxin transport and diverse morphological defects

NASA Technical Reports Server (NTRS)

Ruegger, M.; Dewey, E.; Hobbie, L.; Brown, D.; Bernasconi, P.; Turner, J.; Muday, G.; Estelle, M.

1997-01-01

Polar auxin transport plays a key role in the regulation of plant growth and development. To identify genes involved in this process, we have developed a genetic procedure to screen for mutants of Arabidopsis that are altered in their response to auxin transport inhibitors. We recovered a total of 16 independent mutants that defined seven genes, called TRANSPORT INHIBITOR RESPONSE (TIR) genes. Recessive mutations in one of these genes, TIR3, result in altered responses to transport inhibitors, a reduction in polar auxin transport, and a variety of morphological defects that can be ascribed to changes in indole-3-acetic acid distribution. Most dramatically, tir3 seedlings are strongly deficient in lateral root production, a process that is known to depend on polar auxin transport from the shoot into the root. In addition, tir3 plants display a reduction in apical dominance as well as decreased elongation of siliques, pedicels, roots, and the inflorescence. Biochemical studies indicate that tir3 plants have a reduced number of N-1-naphthylphthalamic (NPA) binding sites, suggesting that the TIR3 gene is required for expression, localization, or stabilization of the NPA binding protein (NBP). Alternatively, the TIR3 gene may encode the NBP. Because the tir3 mutants have a substantial defect in NPA binding, their phenotype provides genetic evidence for a role for the NBP in plant growth and development.

High efficient OLED displays prepared with the air-gapped bridges on quantum dot patterns for optical recycling

PubMed Central

Kim, Hyo-Jun; Shin, Min-Ho; Kim, Joo-Suc; Kim, Se-Eun; Kim, Young-Joo

2017-01-01

An optically efficient structure was proposed and fabricated to realize high brightness organic light emitting diode (OLED) displays based on a white OLED prepared with the air-gapped bridges on the quantum dot (QD) patterns. Compared with a conventional white OLED display, in our experiments, the optical intensity of the proposed OLED display shows the enhancement of 58.2% in the red color and 16.8% in the green color after applying the air-gapped bridge structure on QD patterns of 20 wt% concentration. This enhancement comes from the two facts that the QD patterns downconvert unnecessary blue or blue/green light to the required green or red light and the air-gapped bridges increase the color conversion efficiency of QDs by optical recycling using total internal reflection (TIR) at the interface. In addition, the color gamut of the proposed OLED display increases from 65.5 to 75.9% (NTSC x, y ratio) due to the narrow emission spectra of QDs. PMID:28211516

High efficient OLED displays prepared with the air-gapped bridges on quantum dot patterns for optical recycling

NASA Astrophysics Data System (ADS)

Kim, Hyo-Jun; Shin, Min-Ho; Kim, Joo-Suc; Kim, Se-Eun; Kim, Young-Joo

2017-02-01

An optically efficient structure was proposed and fabricated to realize high brightness organic light emitting diode (OLED) displays based on a white OLED prepared with the air-gapped bridges on the quantum dot (QD) patterns. Compared with a conventional white OLED display, in our experiments, the optical intensity of the proposed OLED display shows the enhancement of 58.2% in the red color and 16.8% in the green color after applying the air-gapped bridge structure on QD patterns of 20 wt% concentration. This enhancement comes from the two facts that the QD patterns downconvert unnecessary blue or blue/green light to the required green or red light and the air-gapped bridges increase the color conversion efficiency of QDs by optical recycling using total internal reflection (TIR) at the interface. In addition, the color gamut of the proposed OLED display increases from 65.5 to 75.9% (NTSC x, y ratio) due to the narrow emission spectra of QDs.

High efficient OLED displays prepared with the air-gapped bridges on quantum dot patterns for optical recycling.

PubMed

Kim, Hyo-Jun; Shin, Min-Ho; Kim, Joo-Suc; Kim, Se-Eun; Kim, Young-Joo

2017-02-17

An optically efficient structure was proposed and fabricated to realize high brightness organic light emitting diode (OLED) displays based on a white OLED prepared with the air-gapped bridges on the quantum dot (QD) patterns. Compared with a conventional white OLED display, in our experiments, the optical intensity of the proposed OLED display shows the enhancement of 58.2% in the red color and 16.8% in the green color after applying the air-gapped bridge structure on QD patterns of 20 wt% concentration. This enhancement comes from the two facts that the QD patterns downconvert unnecessary blue or blue/green light to the required green or red light and the air-gapped bridges increase the color conversion efficiency of QDs by optical recycling using total internal reflection (TIR) at the interface. In addition, the color gamut of the proposed OLED display increases from 65.5 to 75.9% (NTSC x, y ratio) due to the narrow emission spectra of QDs.

Time-resolved spectroscopy of self-assembly of CCMV protein capsids

NASA Astrophysics Data System (ADS)

Moore, Jelyn; Aronzon, Dina; Manoharan, V. N.

2008-10-01

In order to gain a deeper understanding of the process a virus undergoes to assemble; the purpose of this study to time resolve the self-assembly of a virus. Cowpea Chlorotic Mottle virus (CCMV), an icosahedral type virus, can assemble without its genetic code (RNA) depending on its chemical and physical surroundings. The surface plasmon resonance (SPR) of colloidal gold particles is known to display a shift when the gold interacts with the proteins of a virus. Surface plasmon resonance is the free electron oscillation occurring at the surface of the gold particle resulting in a characteristic peak location at maximal absorbance and peak width. The shift results from the change in the refractive index of the particles as induced by the presence of the proteins. We hope to detect this shift through total internal reflection microscopy (TIRM). The accomplishments of this research are the completion of the TIR setup and the purification of the virus and its proteins.

Linking Spectral Features with Composition, Crystallinity, and Roughness Properties of Silica and Implications for Candidate Hydrothermal Systems on Mars

NASA Astrophysics Data System (ADS)

Hamilton, V. E.; McDowell, M. L.; Berger, J. A.; Cady, S. L.; Knauth, L. P.

2011-12-01

We have collected visible to near infrared reflectance (VNIR, ~0.4 - 2.5 um), thermal infrared emissivity (TIR, ~5 - 45 um), SEM, XRD, surface roughness, and petrographic data for 18 silica samples. These rocks (e.g., replacement chert, geyserite, opal-A/-CT) represent a variety of geologic formation environments, including hydrothermal, and have XRD-determined crystallinities ranging from <1 to >10 according to the quartz crystallinity index. Our findings are relevant to the interpretation of orbital and in situ spectral observations of crystalline or amorphous silica on the Martian surface, some of which may have formed in hydrothermal systems. Almost all of our samples' VNIR spectra contain discernible bands. The most common features are related to hydration (H2O and/or OH) of silica (e.g., at ~1.4, 1.9, and 2.2 um). The visibility and strength of these bands is not always constant between spectra from different areas of a sample. Other features include those of carbonate, phyllosilicate, and iron oxide impurities. All of our amorphous silica samples have hydration features in the VNIR, but we note that the absorptions around ~2.2 um can be very weak in amorphous samples relative to features at other wavelengths and relative to ~2.2-um features observed in Martian data, suggesting that some amorphous silica on Mars could go undetected. Deposits containing significant anhydrous, crystalline silica (chert) may be assumed to lack features in the VNIR, but many of our cherts have spectral features and could be misidentified as materials dominated by what is a minor contaminant. Thermal infrared spectra of chert and opaline silica differ from each other as a result of the loss of long-range Si-O order in increasingly amorphous samples. Our samples display a clear trend in TIR band shapes where features attributable to crystalline quartz and amorphous silica are blended in samples with intermediate crystallinities. Most diagnostic TIR spectral features observable in laboratory data typically are recognizable in hyperspectral remote sensing data. These features are more difficult to distinguish (or are not included) at multispectral resolutions, but in nearly all uncontaminated samples, the positions of Si-O emissivity minima shift towards longer wavelengths with decreasing crystallinity. Contaminating phases with strong VNIR spectral features are observed in some of the TIR spectra but have a negligible effect in others, suggesting that TIR spectroscopy helps constrain the abundances of these phases. In addition to compositional and crystallinity information, our laboratory data demonstrate that TIR spectra can be used to deduce important information on silica phases' texture and orientation. If used in combination, VNIR and TIR spectroscopy can detect and characterize silica phases, allowing us to estimate conditions of silica formation, e.g., high- or low-temperature aqueous systems.

Surgical approach to TIR3 cytology class A prospective evaluation.

PubMed

D'Alessandro, Nicola; Fasano, Giovanni Michele; Gilio, Francesco; Iside, Giovanni; Izzo, Maria Lucia; Loffredo, Andrea; Pinto, Margherita; Tramontano, Salvatore; Tramutola, Giuseppe; Citro, Giuseppe

2014-01-01

Fine-needle aspiration (FNA) has proven to be a safe and reliable method of investigation of thyroid lesions. Referencing to European classification, the associated risk of malignancy for TIR3, category reserved for aspirates that contain architectural and/or nuclear atypia, is variable in such studies. Aims of study were evaluating safety of surgical approach, assessing perioperative parameters surgically related, and estimating neoplastic rate for TIR3 group. A prospective evaluation of all TIR3 submitted to thyroidectomy was conducted by assessing histopatohologic results between January 2005 and December 2012, considering two categories, positive (neoplastic) and negative (not neoplastic) group. Intraoperative and complication rate was analyzed on TIR3 population. A total of 1514 total thyroidectomy was performed from 2005 to 2012: a total of 148 cases was considered on TIR3 group. Positive cases amounted to 64 (43.2%), 29 of which were carcinoma (19.6% of total population) and 35 of which were adenoma, while negative cases amounted to 84 (56.8%). Sensitivity and specificity of TIR3 as neoplastic screening was 43.2% and 82.1%. A total of 32 linfectomies was performed (21.6% of group). Positive group presented a significant lower mean age than negative group (42.1 vs 56.2 years) TIR3 group represents a various category, with probably different malignancy risk. Our results and neoplasms rate confirmed that surgical option should be gold standard, in order to define atypical pattern and reduce delayed diagnoses. Choice of a second FNA or a imaging monitoring should be adopted for specific condition. Fine-needle aspiration, Thyroidectomy, TIR3, Thyroid cancer.

The Prototype HyspIRI Thermal Infrared Radiometer (PHyTIR): A High Speed, Multispectral, Thermal Instrument Development in Support of HyspIRI-TIR

NASA Technical Reports Server (NTRS)

Hook, Simon

2011-01-01

The Prototype HyspIRI Thermal Infrared Radiometer (PHyTIR) is being developed as part of the risk reduction activities associated with the Hyperspectral Infrared Imager (HyspIRI). The HyspIRI mission was recommended by the National Research Council Decadal Survey and includes a visible shortwave infrared (SWIR) pushboom spectrometer and a multispectral whiskbroom thermal infrared (TIR) imager. Data from the HyspIRI mission will be used to address key science questions related to the Solid Earth and Carbon Cycle and Ecosystems focus areas of the NASA Science Mission Directorate. The HyspIRI TIR system will have 60m ground resolution, better than 200mK noise equivalent delta temperature (NEDT), 0.5C absolute temperature resolution with a 5-day repeat from LEO orbit. PHyTIR addresses the technology readiness level (TRL) of certain key subsystems of the TIR imager, primarily the detector assembly and scanning mechanism. PHyTIR will use Mercury Cadmium Telluride (MCT) technology at the focal plane and operate in time delay integration mode. A custom read out integrated circuit (ROIC) will provide the high speed readout hence allowing the high data rates needed for the 5 day repeat. PHyTIR will also demonstrate a newly developed interferometeric metrology system. This system will provide an absolute measurement of the scanning mirror to an order of magnitude better than conventional optical encoders. This will minimize the reliance on ground control points hence minimizing post-processing (e.g. geo-rectification computations).

75 FR 38570 - Self-Regulatory Organizations; International Securities Exchange, LLC; Notice of Filing and...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-02

... Because the foregoing proposed rule change does not significantly affect the protection of investors or... will cancel, and an investor may obtain, hold, trade or surrender TIRs in a round-lot and round-lot... and a national market system, and, in general to protect investors and the public interest, by...

Algorithm development for the TIR bands of GOSAT-2/TANSO-FTS-2: lessons from GOSAT/TANSO-FTS TIR CO2 and CH4 measurement

NASA Astrophysics Data System (ADS)

Saitoh, N.; Yamada, A.; Itatsu, T.; Imasu, R.; Shiomi, K.; Niwa, Y.

2017-12-01

Greenhouse Gases Observing Satellite-2 (GOSAT-2), the successor of GOSAT, is planned to be launched in a year or so later. Thermal and Near Infrared Sensor for Carbon Observation (TANSO)-Fourier Transform Spectrometer-2 (FTS-2) on board the GOSAT-2 has two bands in the thermal infrared (TIR) region from 5.6 to 14.3 μm. We have developed an algorithm to retrieve CO2 and CH4 vertical profiles from the GOSAT/TANSO-FTS TIR band [Saitoh et al., 2009; 2016] and performed validation analysis for the TANSO-FTS TIR CO2 and CH4 products. Saitoh et al. [2016, 2017] showed that TANSO-FTS TIR V1 CO2 data had a seasonal- and regional-dependent negative bias in the upper troposphere and lower stratosphere and a consistent negative bias in the lower and middle troposphere. Holl et al. [2016], Zou et al. [2016], and Olsen et al. [2017] evaluated the data quality of the TANSO-FTS TIR V1 CH4 product through intercomparisons between TANSO-FTS and other satellite-borne and ground-based instruments; their results were generally consistent with comparison results of the V1 CH4 product with aircraft CH4 data [Saitoh et al., in preparation]. GOSAT/TANSO-FTS TIR N2O data, a by-product of the TIR V1 CH4 data, captured enhancement of N2O concentrations over the Mediterranean Sea associated with Asian monsoon circulation in spite of low signal-to-noise ratio (SNR) of TANSO-FTS 7-μm CH4 band [Kangah et al., 2017]. The SNR of the TIR bands of GOSAT-2/TANSO-FTS-2 are expected to be larger than that of TANSO-FTS especially at the 7-μm CH4 band. Based on the TANSO-FTS TIR V1 algorithm, we are now developing a retrieval algorithm for CO2, CH4, and other trace gases from the two TIR bands of GOSAT-2/TANSO-FTS-2. We have performed retrieval simulations using outputs from the Nonhydrostatic Icosahedral Atmospheric Model (NICAM)-based Transport Model (TM) [Niwa et al., 2011; 2017], which will be used as a priori data for the retrieval processing of GOSAT-2/TANSO-FTS-2.

Thermal performance testing of two Thales 9310 pulse-tube cryocoolers for PHyTIR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paine, Christopher G.

2014-01-29

PHyTIR is a NASA-funded technology demonstration for a near-term earth-observing instrument in the thermal infrared spectrum, intended for use in the HyspIRI mission. PHyTIR will use two Thales 9310 single-stage pulse tube cryocoolers, one to directly cool the FPA, the other to simulate a passive radiator. We report performance measurements for the two Thales 9310 cryocoolers intended for inclusion in the PHyTIR demonstrator.

Validation of MOPITT carbon monoxide using ground-based Fourier transform infrared spectrometer data from NDACC

NASA Astrophysics Data System (ADS)

Buchholz, Rebecca R.; Deeter, Merritt N.; Worden, Helen M.; Gille, John; Edwards, David P.; Hannigan, James W.; Jones, Nicholas B.; Paton-Walsh, Clare; Griffith, David W. T.; Smale, Dan; Robinson, John; Strong, Kimberly; Conway, Stephanie; Sussmann, Ralf; Hase, Frank; Blumenstock, Thomas; Mahieu, Emmanuel; Langerock, Bavo

2017-06-01

The Measurements of Pollution in the Troposphere (MOPITT) satellite instrument provides the longest continuous dataset of carbon monoxide (CO) from space. We perform the first validation of MOPITT version 6 retrievals using total column CO measurements from ground-based remote-sensing Fourier transform infrared spectrometers (FTSs). Validation uses data recorded at 14 stations, that span a wide range of latitudes (80° N to 78° S), in the Network for the Detection of Atmospheric Composition Change (NDACC). MOPITT measurements are spatially co-located with each station, and different vertical sensitivities between instruments are accounted for by using MOPITT averaging kernels (AKs). All three MOPITT retrieval types are analyzed: thermal infrared (TIR-only), joint thermal and near infrared (TIR-NIR), and near infrared (NIR-only). Generally, MOPITT measurements overestimate CO relative to FTS measurements, but the bias is typically less than 10 %. Mean bias is 2.4 % for TIR-only, 5.1 % for TIR-NIR, and 6.5 % for NIR-only. The TIR-NIR and NIR-only products consistently produce a larger bias and lower correlation than the TIR-only. Validation performance of MOPITT for TIR-only and TIR-NIR retrievals over land or water scenes is equivalent. The four MOPITT detector element pixels are validated separately to account for their different uncertainty characteristics. Pixel 1 produces the highest standard deviation and lowest correlation for all three MOPITT products. However, for TIR-only and TIR-NIR, the error-weighted average that includes all four pixels often provides the best correlation, indicating compensating pixel biases and well-captured error characteristics. We find that MOPITT bias does not depend on latitude but rather is influenced by the proximity to rapidly changing atmospheric CO. MOPITT bias drift has been bound geographically to within ±0.5 % yr-1 or lower at almost all locations.

Laboratory Thermal Infrared and Visible to Near-Infrared Spectral Analysis of Chert

NASA Astrophysics Data System (ADS)

McDowell, M. L.; Hamilton, V. E.

2007-12-01

Though basaltic materials dominate the composition of the Martian surface, a material with a relatively high silica component in an area of Eos Chasma was reported by [1] from thermal infrared (TIR) data. The spectrum of the silica phase resembles quartz or chert, but with the existing information it is difficult to tell which phase best fits the observations. Though quartz, chert, and amorphous silica are chemically identical (SiO2), their physical differences (e.g., microstructures) result in different TIR spectral characteristics. Previous studies have analyzed a limited number of chert samples using emission infrared spectroscopy [2] and transmission infrared spectroscopy [3]. We continue these preliminary studies with an investigation aiming to more completely understand and document the variation in spectral character of cherts. This knowledge may help to identify the silica phase in Eos Chasma and any future discoveries. Our study includes a more extensive sampling of geologic chert in hand sample (>15 samples) with various sources, methods of formation, surface textures, and crystallinities. We analyzed their visible to near-infrared (VNIR) reflectance spectra, as well as spectral features in TIR emission spectra. We measured multiple locations on each sample to determine spectral homogeneity across the sample and between various orientations. Where possible, natural, cut, and recently fractured surfaces were measured. We compared the collected TIR spectra for similarities and differences in shape and spectral contrast within each sample and between samples that may relate to variations in the samples' structure (e.g. crystallinity, and surface texture). VNIR measurements show features indicative of non-silica phases and water that may be present in the cherts. [1] Hamilton, V.E. (2005) Eos Trans. AGU, Fall Meeting Suppl., Abstract P24A-08. [2] Michalski, J.R. (2005) PhD Diss., ASU, Tempe. [3] Long, D. G. et al. (2001) Canadian Archaeological Assoc., 33rd Meeting.

Thermal infrared imagery as a tool for analysing the variability of surface saturated areas at various temporal and spatial scales

NASA Astrophysics Data System (ADS)

Glaser, Barbara; Antonelli, Marta; Pfister, Laurent; Klaus, Julian

2017-04-01

Surface saturated areas are important for the on- and offset of hydrological connectivity within the hillslope-riparian-stream continuum. This is reflected in concepts such as variable contributing areas or critical source areas. However, we still lack a standardized method for areal mapping of surface saturation and for observing its spatiotemporal variability. Proof-of-concept studies in recent years have shown the potential of thermal infrared (TIR) imagery to record surface saturation dynamics at various temporal and spatial scales. Thermal infrared imagery is thus a promising alternative to conventional approaches, such as the squishy boot method or the mapping of vegetation. In this study we use TIR images to investigate the variability of surface saturated areas at different temporal and spatial scales in the forested Weierbach catchment (0.45 km2) in western Luxembourg. We took TIR images of the riparian zone with a hand-held FLIR infrared camera at fortnightly intervals over 18 months at nine different locations distributed over the catchment. Not all of the acquired images were suitable for a derivation of the surface saturated areas, as various factors influence the usability of the TIR images (e.g. temperature contrasts, shadows, fog). Nonetheless, we obtained a large number of usable images that provided a good insight into the dynamic behaviour of surface saturated areas at different scales. The images revealed how diverse the evolution of surface saturated areas can be throughout the hydrologic year. For some locations with similar morphology or topography we identified diverging saturation dynamics, while other locations with different morphology / topography showed more similar behaviour. Moreover, we were able to assess the variability of the dynamics of expansion / contraction of saturated areas within the single locations, which can help to better understand the mechanisms behind surface saturation development.

Unmanned Ground Vehicle Perception Using Thermal Infrared Cameras

NASA Technical Reports Server (NTRS)

Rankin, Arturo; Huertas, Andres; Matthies, Larry; Bajracharya, Max; Assad, Christopher; Brennan, Shane; Bellut, Paolo; Sherwin, Gary

2011-01-01

TIR cameras can be used for day/night Unmanned Ground Vehicle (UGV) autonomous navigation when stealth is required. The quality of uncooled TIR cameras has significantly improved over the last decade, making them a viable option at low speed Limiting factors for stereo ranging with uncooled LWIR cameras are image blur and low texture scenes TIR perception capabilities JPL has explored includes: (1) single and dual band TIR terrain classification (2) obstacle detection (pedestrian, vehicle, tree trunks, ditches, and water) (3) perception thru obscurants

Spatial and Temporal Scaling of Thermal Infrared Remote Sensing Data

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Goel, Narendra S.

1995-01-01

Although remote sensing has a central role to play in the acquisition of synoptic data obtained at multiple spatial and temporal scales to facilitate our understanding of local and regional processes as they influence the global climate, the use of thermal infrared (TIR) remote sensing data in this capacity has received only minimal attention. This results from some fundamental challenges that are associated with employing TIR data collected at different space and time scales, either with the same or different sensing systems, and also from other problems that arise in applying a multiple scaled approach to the measurement of surface temperatures. In this paper, we describe some of the more important problems associated with using TIR remote sensing data obtained at different spatial and temporal scales, examine why these problems appear as impediments to using multiple scaled TIR data, and provide some suggestions for future research activities that may address these problems. We elucidate the fundamental concept of scale as it relates to remote sensing and explore how space and time relationships affect TIR data from a problem-dependency perspective. We also describe how linearity and non-linearity observation versus parameter relationships affect the quantitative analysis of TIR data. Some insight is given on how the atmosphere between target and sensor influences the accurate measurement of surface temperatures and how these effects will be compounded in analyzing multiple scaled TIR data. Last, we describe some of the challenges in modeling TIR data obtained at different space and time scales and discuss how multiple scaled TIR data can be used to provide new and important information for measuring and modeling land-atmosphere energy balance processes.

Thermal Infrared Remote Sensing for Analysis of Landscape Ecological Processes: Methods and Applications

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Luvall, Jeffrey C.

1998-01-01

Thermal Infrared (TIR) remote sensing data can provide important measurements of surface energy fluxes and temperatures, which are integral to understanding landscape processes and responses. One example of this is the successful application of TIR remote sensing data to estimate evapotranspiration and soil moisture, where results from a number of studies suggest that satellite-based measurements from TIR remote sensing data can lead to more accurate regional-scale estimates of daily evapotranspiration. With further refinement in analytical techniques and models, the use of TIR data from airborne and satellite sensors could be very useful for parameterizing surface moisture conditions and developing better simulations of landscape energy exchange over a variety of conditions and space and time scales. Thus, TIR remote sensing data can significantly contribute to the observation, measurement, and analysis of energy balance characteristics (i.e., the fluxes and redistribution of thermal energy within and across the land surface) as an implicit and important aspect of landscape dynamics and landscape functioning. The application of TIR remote sensing data in landscape ecological studies has been limited, however, for several fundamental reasons that relate primarily to the perceived difficulty in use and availability of these data by the landscape ecology community, and from the fragmentation of references on TIR remote sensing throughout the scientific literature. It is our purpose here to provide evidence from work that has employed TIR remote sensing for analysis of landscape characteristics to illustrate how these data can provide important data for the improved measurement of landscape energy response and energy flux relationships. We examine the direct or indirect use of TIR remote sensing data to analyze landscape biophysical characteristics, thereby offering some insight on how these data can be used more robustly to further the understanding and modeling of landscape ecological processes.

Analysis of simulated advanced spaceborne thermal emission and reflection (ASTER) radiometer data of the Iron Hill, Colorado, study area for mapping lithologies

USGS Publications Warehouse

Rowan, L.C.

1998-01-01

The advanced spaceborne thermal emission and reflection (ASTER) radiometer was designed to record reflected energy in nine channels with 15 or 30 m resolution, including stereoscopic images, and emitted energy in five channels with 90 m resolution from the NASA Earth Observing System AM1 platform. A simulated ASTER data set was produced for the Iron Hill, Colorado, study area by resampling calibrated, registered airborne visible/infrared imaging spectrometer (AVIRIS) data, and thermal infrared multispectral scanner (TIMS) data to the appropriate spatial and spectral parameters. A digital elevation model was obtained to simulate ASTER-derived topographic data. The main lithologic units in the area are granitic rocks and felsite into which a carbonatite stock and associated alkalic igneous rocks were intruded; these rocks are locally covered by Jurassic sandstone, Tertiary rhyolitic tuff, and colluvial deposits. Several methods were evaluated for mapping the main lithologic units, including the unsupervised classification and spectral curve-matching techniques. In the five thermal-infrared (TIR) channels, comparison of the results of linear spectral unmixing and unsupervised classification with published geologic maps showed that the main lithologic units were mapped, but large areas with moderate to dense tree cover were not mapped in the TIR data. Compared to TIMS data, simulated ASTER data permitted slightly less discrimination in the mafic alkalic rock series, and carbonatite was not mapped in the TIMS nor in the simulated ASTER TIR data. In the nine visible and near-infrared channels, unsupervised classification did not yield useful results, but both the spectral linear unmixing and the matched filter techniques produced useful results, including mapping calcitic and dolomitic carbonatite exposures, travertine in hot spring deposits, kaolinite in argillized sandstone and tuff, and muscovite in sericitized granite and felsite, as well as commonly occurring illite/muscovite. However, the distinction made in AVIRIS data between calcite and dolomite was not consistently feasible in the simulated ASTER data. Comparison of the lithologic information produced by spectral analysis of the simulated ASTER data to a photogeologic interpretation of a simulated ASTER color image illustrates the high potential of spectral analysis of ASTER data to geologic interpretation. This paper is not subject to U.S. copyright. Published in 1998 by the American Geophysical Union.

Evaluation of airborne thermal infrared imagery for locating mine drainage sites in the Lower Youghiogheny River Basin, Pennsylvania, USA

USGS Publications Warehouse

Sams, James I.; Veloski, Garret; Ackman, T.E.

2003-01-01

Nighttime high-resolution airborne thermal infrared imagery (TIR) data were collected in the predawn hours during Feb 5-8 and March 11-12, 1999, from a helicopter platform for 72.4 km of the Youghiogheny River, from Connellsville to McKeesport, in southwestern Pennsylvania. The TIR data were used to identify sources of mine drainage from abandoned mines that discharge directly into the Youghiogheny River. Image-processing and geographic information systems (GIS) techniques were used to identify 70 sites within the study area as possible mine drainage sources. The combination of GIS datasets and the airborne TIR data provided a fast and accurate method to target the possible sources. After field reconnaissance, it was determined that 24 of the 70 sites were mine drainage. This paper summarizes: the procedures used to process the TIR data and extract potential mine-drainage sites; methods used for verification of the TIR data; a discussion of factors affecting the TIR data; and a brief summary of water quality.

ASTER's First Views of Red Sea, Ethiopia - Thermal-Infrared (TIR) Image (monochrome)

NASA Technical Reports Server (NTRS)

2000-01-01

ASTER succeeded in acquiring this image at night, which is something Visible/Near Infrared VNIR) and Shortwave Infrared (SWIR) sensors cannot do. The scene covers the Red Sea coastline to an inland area of Ethiopia. White pixels represent areas with higher temperature material on the surface, while dark pixels indicate lower temperatures. This image shows ASTER's ability as a highly sensitive, temperature-discerning instrument and the first spaceborne TIR multi-band sensor in history.

The size of image: 60 km x 60 km approx., ground resolution 90 m x 90 m approximately.

The ASTER instrument was built in Japan for the Ministry of International Trade and Industry. A joint United States/Japan Science Team is responsible for instrument design, calibration, and data validation. ASTER is flying on the Terra satellite, which is managed by NASA's Goddard Space Flight Center, Greenbelt, MD.

Landsat-8 Thermal Infrared Sensor (TIRS) Vicarious Radiometric Calibration

NASA Technical Reports Server (NTRS)

Barsi, Julia A.; Shott, John R.; Raqueno, Nina G.; Markham, Brian L.; Radocinski, Robert G.

2014-01-01

Launched in February 2013, the Landsat-8 carries on-board the Thermal Infrared Sensor (TIRS), a two-band thermal pushbroom imager, to maintain the thermal imaging capability of the Landsat program. The TIRS bands are centered at roughly 10.9 and 12 micrometers (Bands 10 and 11 respectively). They have 100 m spatial resolution and image coincidently with the Operational Land Imager (OLI), also on-board Landsat-8. The TIRS instrument has an internal calibration system consisting of a variable temperature blackbody and a special viewport with which it can see deep space; a two point calibration can be performed twice an orbit. Immediately after launch, a rigorous vicarious calibration program was started to validate the absolute calibration of the system. The two vicarious calibration teams, NASA/Jet Propulsion Laboratory (JPL) and the Rochester Institute of Technology (RIT), both make use of buoys deployed on large water bodies as the primary monitoring technique. RIT took advantage of cross-calibration opportunity soon after launch when Landsat-8 and Landsat-7 were imaging the same targets within a few minutes of each other to perform a validation of the absolute calibration. Terra MODIS is also being used for regular monitoring of the TIRS absolute calibration. The buoy initial results showed a large error in both bands, 0.29 and 0.51 W/sq m·sr·micrometers or -2.1 K and -4.4 K at 300 K in Band 10 and 11 respectively, where TIRS data was too hot. A calibration update was recommended for both bands to correct for a bias error and was implemented on 3 February 2014 in the USGS/EROS processing system, but the residual variability is still larger than desired for both bands (0.12 and 0.2 W/sq m·sr·micrometers or 0.87 and 1.67 K at 300 K). Additional work has uncovered the source of the calibration error: out-of-field stray light. While analysis continues to characterize the stray light contribution, the vicarious calibration work proceeds. The additional data have not changed the statistical assessment but indicate that the correction (particularly in band 11) is probably only valid for a subset of data. While the stray light effect is small enough in Band 10 to make the data useful across a wide array of applications, the effect in Band 11 is larger and the vicarious results suggest that Band 11 data should not be used where absolute calibration is required.

Combined VSWIR/TIR Products Overview: Issues and Examples

NASA Technical Reports Server (NTRS)

Knox, Robert G.

2010-01-01

The presentation provides a summary of VSWIR data collected at 19-day intervals for most areas. TIR data was collected both day and night on a 5-day cycle (more frequently at higher latitudes), the TIR swath is four times as wide as VSWIR, and the 5-day orbit repeat is approximate. Topics include nested swath geometry for reference point design and coverage simulations for sample FLUXNET tower sites. Other points examined include variation in latitude for revisit frequency, overpass times, and TIR overlap geometry and timing between VSWIR data collections.

Thermal Imaging Performance of TIR Onboard the Hayabusa2 Spacecraft

NASA Astrophysics Data System (ADS)

Arai, Takehiko; Nakamura, Tomoki; Tanaka, Satoshi; Demura, Hirohide; Ogawa, Yoshiko; Sakatani, Naoya; Horikawa, Yamato; Senshu, Hiroki; Fukuhara, Tetsuya; Okada, Tatsuaki

2017-07-01

The thermal infrared imager (TIR) is a thermal infrared camera onboard the Hayabusa2 spacecraft. TIR will perform thermography of a C-type asteroid, 162173 Ryugu (1999 JU3), and estimate its surface physical properties, such as surface thermal emissivity ɛ , surface roughness, and thermal inertia Γ, through remote in-situ observations in 2018 and 2019. In prelaunch tests of TIR, detector calibrations and evaluations, along with imaging demonstrations, were performed. The present paper introduces the experimental results of a prelaunch test conducted using a large-aperture collimator in conjunction with TIR under atmospheric conditions. A blackbody source, controlled at constant temperature, was measured using TIR in order to construct a calibration curve for obtaining temperatures from observed digital data. As a known thermal emissivity target, a sandblasted black almite plate warmed from the back using a flexible heater was measured by TIR in order to evaluate the accuracy of the calibration curve. As an analog target of a C-type asteroid, carbonaceous chondrites (50 mm × 2 mm in thickness) were also warmed from the back and measured using TIR in order to clarify the imaging performance of TIR. The calibration curve, which was fitted by a specific model of the Planck function, allowed for conversion to the target temperature within an error of 1°C (3σ standard deviation) for the temperature range of 30 to 100°C. The observed temperature of the black almite plate was consistent with the temperature measured using K-type thermocouples, within the accuracy of temperature conversion using the calibration curve when the temperature variation exhibited a random error of 0.3 °C (1σ ) for each pixel at a target temperature of 50°C. TIR can resolve the fine surface structure of meteorites, including cracks and pits with the specified field of view of 0.051°C (328 × 248 pixels). There were spatial distributions with a temperature variation of 3°C at the setting temperature of 50°C in the thermal images obtained by TIR. If the spatial distribution of the temperature is caused by the variation of the thermal emissivity, including the effects of the surface roughness, the difference of the thermal emissivity Δ ɛ is estimated to be approximately 0.08, as calculated by the Stefan-Boltzmann raw. Otherwise, if the distribution of temperature is caused by the variation of the thermal inertia, the difference of the thermal inertia Δ Γ is calculated to be approximately 150 J m^{-2} s^{0.5} K^{-1}, based on a simulation using a 20-layer model of the heat balance equation. The imaging performance of TIR based on the results of the meteorite experiments indicates that TIR can resolve the spatial distribution of thermal emissivity and thermal inertia of the asteroid surface within accuracies of Δ ɛ \\cong 0.02 and Δ Γ \\cong 20 J m^{-2} s^{0.5} K^{-1}, respectively. However, the effects of the thermal emissivity and thermal inertia will degenerate in thermal images of TIR. Therefore, TIR will observe the same areas of the asteroid surface numerous times ({>}10 times, in order to ensure statistical significance), which allows us to determine both the parameters of the surface thermal emissivity and the thermal inertia by least-squares fitting to a thermal model of Ryugu.

Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection.

PubMed

Rathkolb, Birgit; Noyes, Harry A; Brass, Andy; Dark, Paul; Fuchs, Helmut; Gailus-Durner, Valérie; Gibson, John; de Angelis, Martin Hrabé; Ogugo, Moses; Iraqi, Fuad; Kemp, Steve J; Naessens, Jan; Pope, Mathew E; Wolf, Eckhard; Agaba, Morris

2009-09-01

Trypanosoma congolense is a protozoan parasite that causes severe diseases in livestock. Three major quantative trait loci (QTL), Tir1, Tir2, and Tir3, control the survival time of mice after infection with T. congolense. Congenic mice carrying the C57BL/6 resistance alleles on the A/J background were developed for each of these loci. The congenic mice were used to physically map the regions containing the QTL gene(s) and to investigate the physiological effect of each locus. Clinical chemistry data for infected A/J, C57BL/6, and BALB/c mice were obtained for 15 analytes at five time points. Congenic mice were assessed for survival, parasitemia, and anemia as well as seven clinical-chemical analytes. The survival times were significantly increased in the Tir1 and Tir2 mice but not Tir3 congenic mice. The survival time of the parental inbred mice correlated negatively with parasitemia but positively with alanine aminotransferase activities in serum, suggesting that inflammatory reactions in the liver had a beneficial effect possibly associated with reduced parasitemia. However, there was no difference in parasitemia or liver enzyme activities of Tir1 and Tir2 congenic mice relative to their controls, showing that survival, parasitemia, and degree of liver damage are not associated with each other, despite the correlation in the parental lines. These data suggest that the congenic loci affect survival but do not affect control of parasite number. They may therefore act by limiting the pathological consequences of T. congolense infection.

Landsat-8: Status and on-orbit performance

USGS Publications Warehouse

Markham, Brian L; Barsi, Julia A.; Morfitt, Ron; Choate, Michael J.; Montanaro, Matthew; Arvidson, Terry; Irons, James R.

2015-01-01

Landsat 8 and its two Earth imaging sensors, the Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS) have been operating on-orbit for 2 ½ years. Landsat 8 has been acquiring substantially more images than initially planned, typically around 700 scenes per day versus a 400 scenes per day requirement, acquiring nearly all land scenes. Both the TIRS and OLI instruments are exceeding their SNR requirements by at least a factor of 2 and are very stable, degrading by at most 1% in responsivity over the mission to date. Both instruments have 100% operable detectors covering their cross track field of view using the redundant detectors as necessary. The geometric performance is excellent, meeting or exceeding all performance requirements. One anomaly occurred with the TIRS Scene Select Mirror (SSM) encoder that affected its operation, though by switching to the side B electronics, this was fully recovered. The one challenge is with the TIRS stray light, which affects the flat fielding and absolute calibration of the TIRS data. The error introduced is smaller in TIRS band 10. Band 11 should not currently be used in science applications.

Simulation of Image Performance Characteristics of the Landsat Data Continuity Mission (LDCM) Thermal Infrared Sensor (TIRS)

NASA Technical Reports Server (NTRS)

Schott, John; Gerace, Aaron; Brown, Scott; Gartley, Michael; Montanaro, Matthew; Reuter, Dennis C.

2012-01-01

The next Landsat satellite, which is scheduled for launch in early 2013, will carry two instruments: the Operational Land Imager (OLI) and the Thermal Infrared Sensor (TIRS). Significant design changes over previous Landsat instruments have been made to these sensors to potentially enhance the quality of Landsat image data. TIRS, which is the focus of this study, is a dual-band instrument that uses a push-broom style architecture to collect data. To help understand the impact of design trades during instrument build, an effort was initiated to model TIRS imagery. The Digital Imaging and Remote Sensing Image Generation (DIRSIG) tool was used to produce synthetic "on-orbit" TIRS data with detailed radiometric, geometric, and digital image characteristics. This work presents several studies that used DIRSIG simulated TIRS data to test the impact of engineering performance data on image quality in an effort to determine if the image data meet specifications or, in the event that they do not, to determine if the resulting image data are still acceptable.

The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus.

PubMed

Marzo, Mar; Puig, Marta; Ruiz, Alfredo

2008-02-26

Galileo is the only transposable element (TE) known to have generated natural chromosomal inversions in the genus Drosophila. It was discovered in Drosophila buzzatii and classified as a Foldback-like element because of its long, internally repetitive, terminal inverted repeats (TIRs) and lack of coding capacity. Here, we characterized a seemingly complete copy of Galileo from the D. buzzatii genome. It is 5,406 bp long, possesses 1,229-bp TIRs, and encodes a 912-aa transposase similar to those of the Drosophila melanogaster 1360 (Hoppel) and P elements. We also searched the recently available genome sequences of 12 Drosophila species for elements similar to Dbuz\\Galileo by using bioinformatic tools. Galileo was found in six species (ananassae, willistoni, peudoobscura, persimilis, virilis, and mojavensis) from the two main lineages within the Drosophila genus. Our observations place Galileo within the P superfamily of cut-and-paste transposons and extend considerably its phylogenetic distribution. The interspecific distribution of Galileo indicates an ancient presence in the genus, but the phylogenetic tree built with the transposase amino acid sequences contrasts significantly with that of the species, indicating lineage sorting and/or horizontal transfer events. Our results also suggest that Foldback-like elements such as Galileo may evolve from DNA-based transposon ancestors by loss of the transposase gene and disproportionate elongation of TIRs.

The Foldback-like element Galileo belongs to the P superfamily of DNA transposons and is widespread within the Drosophila genus

PubMed Central

Marzo, Mar; Puig, Marta; Ruiz, Alfredo

2008-01-01

Galileo is the only transposable element (TE) known to have generated natural chromosomal inversions in the genus Drosophila. It was discovered in Drosophila buzzatii and classified as a Foldback-like element because of its long, internally repetitive, terminal inverted repeats (TIRs) and lack of coding capacity. Here, we characterized a seemingly complete copy of Galileo from the D. buzzatii genome. It is 5,406 bp long, possesses 1,229-bp TIRs, and encodes a 912-aa transposase similar to those of the Drosophila melanogaster 1360 (Hoppel) and P elements. We also searched the recently available genome sequences of 12 Drosophila species for elements similar to Dbuz\\Galileo by using bioinformatic tools. Galileo was found in six species (ananassae, willistoni, peudoobscura, persimilis, virilis, and mojavensis) from the two main lineages within the Drosophila genus. Our observations place Galileo within the P superfamily of cut-and-paste transposons and extend considerably its phylogenetic distribution. The interspecific distribution of Galileo indicates an ancient presence in the genus, but the phylogenetic tree built with the transposase amino acid sequences contrasts significantly with that of the species, indicating lineage sorting and/or horizontal transfer events. Our results also suggest that Foldback-like elements such as Galileo may evolve from DNA-based transposon ancestors by loss of the transposase gene and disproportionate elongation of TIRs. PMID:18287066

Thermal Infrared Imager on Hayabusa2: Science and Development

NASA Astrophysics Data System (ADS)

Okada, Tatsuaki

2015-04-01

Thermal Infrared Imager TIR was developed and calibrated for Haya-busa2 asteroid explorer, aiming at the investigation of thermo-physical properties of C-class near-Earth sub-km sized asteroid (162173) 1999JU3. TIR is based on the 2D micro-bolometer array with germani-um lens to image the surface of asteroid in 8 to 12 μm wavelength (1), measuring the thermal emission off the asteroid surface. Its field of view is 16° x 12° with 328 x 248 pixels. At least 40 (up to 100) images will be taken during asteroid rotation once a week, mainly from the Home Position which is about 20km sunward from asteroid surface. Therefore TIR will image the whole asteroid with spatial resolution of < 20m per pixel, and the temperature profile of each site on the asteroid will be traced from dawn to dusk regions by asteroid rotation. The scien-tific objectives of TIR include the mapping of asteroid surface condi-tions (regional distribution of thermal inertia), since the surface physical conditions are strongly correlated with thermal inertia. It is so informa-tive on understanding the re-accretion or surface sedimentation process-es of the asteroid to be the current form. TIR data will be used for searching for those sites having the typical particle size of 1mm for best sample collection, and within the proper thermal condition for space-craft safe operation. After launch of Hayabusa2, TIR has been tested successfully, covering from -100 to 150 °C using a single parameter settings (2). This implies that TIR is actually able to map the surface other than the sunlit areas. Performance of TIR was found basically the same as those in the pre-launch test, when the temperature of TIR is well controlled. References: (1) Fukuhara T. et al., (2011) Earth Planet. Space 63, 1009-1018; (2) Okada T. et al., (2015) Lunar Planet. Sci. Conf. 46, #1331.

Evaluation of airborne thermal infrared imagery for locating mine drainage sites in the Lower Kettle Creek and Cooks Run Basins, Pennsylvania, USA

USGS Publications Warehouse

Sams, James I.; Veloski, Garret

2003-01-01

High-resolution airborne thermal infrared (TIR) imagery data were collected over 90.6 km2 (35 mi2) of remote and rugged terrain in the Kettle Creek and Cooks Run Basins, tributaries of the West Branch of the Susquehanna River in north-central Pennsylvania. The purpose of this investigation was to evaluate the effectiveness of TIR for identifying sources of acid mine drainage (AMD) associated with abandoned coal mines. Coal mining from the late 1800s resulted in many AMD sources from abandoned mines in the area. However, very little detailed mine information was available, particularly on the source locations of AMD sites. Potential AMD sources were extracted from airborne TIR data employing custom image processing algorithms and GIS data analysis. Based on field reconnaissance of 103 TIR anomalies, 53 sites (51%) were classified as AMD. The AMD sources had low pH (<4) and elevated concentrations of iron and aluminum. Of the 53 sites, approximately 26 sites could be correlated with sites previously documented as AMD. The other 27 mine discharges identified in the TIR data were previously undocumented. This paper presents a summary of the procedures used to process the TIR data and extract potential mine drainage sites, methods used for field reconnaissance and verification of TIR data, and a brief summary of water-quality data.

A Toll/interleukin (IL)-1 receptor domain protein from Yersinia pestis interacts with mammalian IL-1/Toll-like receptor pathways but does not play a central role in the virulence of Y. pestis in a mouse model of bubonic plague.

PubMed

Spear, Abigail M; Rana, Rohini R; Jenner, Dominic C; Flick-Smith, Helen C; Oyston, Petra C F; Simpson, Peter; Matthews, Stephen J; Byrne, Bernadette; Atkins, Helen S

2012-06-01

The Toll/interleukin (IL)-1 receptor (TIR) domain is an essential component of eukaryotic innate immune signalling pathways. Interaction between TIR domains present in Toll-like receptors and associated adaptors initiates and propagates an immune signalling cascade. Proteins containing TIR domains have also been discovered in bacteria. Studies have subsequently shown that these proteins are able to modulate mammalian immune signalling pathways dependent on TIR interactions and that this may represent an evasion strategy for bacterial pathogens. Here, we investigate a TIR domain protein from the highly virulent bacterium Yersinia pestis, the causative agent of plague. When overexpressed in vitro this protein is able to downregulate IL-1β- and LPS-dependent signalling to NFκB and to interact with the TIR adaptor protein MyD88. This interaction is dependent on a single proline residue. However, a Y. pestis knockout mutant lacking the TIR domain protein was not attenuated in virulence in a mouse model of bubonic plague. Minor alterations in the host cytokine response to the mutant were indicated, suggesting a potential subtle role in pathogenesis. The Y. pestis mutant also showed increased auto-aggregation and reduced survival in high-salinity conditions, phenotypes which may contribute to pathogenesis or survival.

Changes in tissue water and indentation resistance of lymphedematous limbs accompanying low level laser therapy (LLLT) of fibrotic skin.

PubMed

Mayrovitz, H N; Davey, S

2011-12-01

Our goal was to determine effects of low-level-laser-therapy (LLLT) on skin water and tissue indentation resistance (TIR) in patients with arm (N = 38) or leg (N = 38) lymphedema. Skin water was determined from tissue dielectric constant (TDC) measurements and TIR determined from measurements of force resulting from tissue indentations of 3-4 mm. A limb-location with fibrosis was identified by palpation and treated with an LLLT device for one minute at each of five points within a 3 cm2 area. TDC and TIR at these sites and corresponding sites on the contralateral limb were measured prior to LLLT (pre-LLLT), immediately after LLLT (post-LLLT) and after a manual lymphatic drainage (MLD) session (post-MLD). Results, from arms and legs, showed that post-LLLT values of TIR and TDC were significantly less than pre-LLLT. TIR values remained significantly reduced at post-MLD whereas TDC values were not significantly different from pre-LLLT values. On follow-up visit, 17 previously LLLT treated legs were sham treated with an inactive LLLT unit and measurements replicated. A TIR and TDC change-pattern similar to that obtained with the active LLLT was obtained, but sham-related reductions in TIR and TDC immediately post sham-treatment were significantly less than achieved with the prior active LLLT treatment.

What more have we learned from thermal infrared remote sensing of active volcanoes other than they are hot? (Invited)

NASA Astrophysics Data System (ADS)

Ramsey, M.

2009-12-01

Thermal infrared (TIR) remote sensing has been used for decades to detect changes in the heat output of active and reawakening volcanoes. The data from these thermally anomalous pixels are commonly used either as a monitoring tool or to calculate parameters such as effusion rate and eruptive style. First and second generation TIR data have been limited in the number of spectral channels and/or the spatial resolution. Two spectral channels with only one km spatial resolution has been the norm and therefore the number of science applications is limited to very large or very hot events. The one TIR channel of the Landsat ETM+ instrument improved the spatial resolution to 60 m, but it was not until the launch of ASTER in late 1999 that orbital TIR spectral resolution increased to five channels at 90 m per pixel. For the first time, the ability existed to capture multispectral emitted radiance from volcanic surfaces, which has allowed the extraction of emissivity as well as temperature. Over the past decade ASTER TIR emissivity data have been examined for a variety of volcanic processes including lava flow emplacement at Kilauea and Kluichevskoi, silicic lava dome composition at Sheveluch, Bezymianny and Mt. St. Helens, low temperature fumaroles emissions at Cerro Negro, and textural changes on the pyroclastic flow deposits at Merapi, Sheveluch and Bezymianny. Thermal-temporal changes at the 90 m scale are still an important monitoring tool for active volcanoes using ASTER TIR data. However, the ability to extract physical parameters such as micron-scale roughness and bulk mineralogy has added tremendously to the science derived from the TIR region. This new information has also presented complications such as the effects of sub-pixel thermal heterogeneities and amorphous glass on the emissivity spectra. If better understood, these complications can provide new insights into the physical state of the volcanic surfaces. Therefore, new data processing algorithms, laboratory, and field-based TIR instrumentation have been developed to more accurately model and correct these data. This presentation will summarize the results from nearly a decade of ASTER TIR remote sensing of active volcanoes around the globe. It will also document the first results of a micro furnace designed to capture emission of molten surfaces in real time as well as a field TIR camera modified to extract emissivity of surfaces at the cm pixel scale. The integration of laboratory, field, and orbital TIR remote sensing of active volcanoes provide a more complete picture of processes operating a variety of spatial, temporal and physical scales.

Thermal Infrared Imaging Experiments of C-Type Asteroid 162173 Ryugu on Hayabusa2

NASA Astrophysics Data System (ADS)

Okada, Tatsuaki; Fukuhara, Tetsuya; Tanaka, Satoshi; Taguchi, Makoto; Imamura, Takeshi; Arai, Takehiko; Senshu, Hiroki; Ogawa, Yoshiko; Demura, Hirohide; Kitazato, Kohei; Nakamura, Ryosuke; Kouyama, Toru; Sekiguchi, Tomohiko; Hasegawa, Sunao; Matsunaga, Tsuneo; Wada, Takehiko; Takita, Jun; Sakatani, Naoya; Horikawa, Yamato; Endo, Ken; Helbert, Jörn; Müller, Thomas G.; Hagermann, Axel

2017-07-01

The thermal infrared imager TIR onboard Hayabusa2 has been developed to investigate thermo-physical properties of C-type, near-Earth asteroid 162173 Ryugu. TIR is one of the remote science instruments on Hayabusa2 designed to understand the nature of a volatile-rich solar system small body, but it also has significant mission objectives to provide information on surface physical properties and conditions for sampling site selection as well as the assessment of safe landing operations. TIR is based on a two-dimensional uncooled micro-bolometer array inherited from the Longwave Infrared Camera LIR on Akatsuki (Fukuhara et al., 2011). TIR takes images of thermal infrared emission in 8 to 12 μm with a field of view of 16 × 12° and a spatial resolution of 0.05° per pixel. TIR covers the temperature range from 150 to 460 K, including the well calibrated range from 230 to 420 K. Temperature accuracy is within 2 K or better for summed images, and the relative accuracy or noise equivalent temperature difference (NETD) at each of pixels is 0.4 K or lower for the well-calibrated temperature range. TIR takes a couple of images with shutter open and closed, the corresponding dark frame, and provides a true thermal image by dark frame subtraction. Data processing involves summation of multiple images, image processing including the StarPixel compression (Hihara et al., 2014), and transfer to the data recorder in the spacecraft digital electronics (DE). We report the scientific and mission objectives of TIR, the requirements and constraints for the instrument specifications, the designed instrumentation and the pre-flight and in-flight performances of TIR, as well as its observation plan during the Hayabusa2 mission.

The Preflight Calibration of the Thermal Infrared Sensor (TIRS) on the Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Smith, Ramsey; Reuter, Dennis; Irons, James; Lunsford, Allen; Montanero, Matthew; Tesfaye, Zelalem; Wenny, Brian; Thome, Kurtis

2011-01-01

The preflight calibration testing of TIRS evaluates the performance of the instrument at the component, subsystem and system level, The overall objective is to provide an instrument that is well calibrated and well characterized with specification compliant data that will ensure the data continuity of Landsat from the previous missions to the LDCM, The TIRS flight build unit and the flight instrument were assessed through a series of calibration tests at NASA Goddard Space Flight Center. Instrument-level requirements played a strong role in defining the test equipment and procedures used for the calibration in the thermal/vacuum chamber. The calibration ground support equipment (CGSE), manufactured by MEI and ATK Corporation, was used to measure the optical, radiometric and geometric characteristics of TIRS, The CGSE operates in three test configurations: GeoRad (geometric, radiometric and spatial), flood source and spectral, TIRS was evaluated though the following tests: bright target recovery, radiometry, spectral response, spatial shape, scatter, stray light, focus, and uniformity, Data were obtained for the instrument and various subsystems under conditions simulating those on orbit In the spectral configuration, a monochromator system with a blackbody source is used for in-band and out-of-band relative spectral response characterization, In the flood source configuration the entire focal plane array is illuminated simultaneously to investigate pixel-to-pixel uniformity and dead or inoperable pixels, The remaining tests were executed in the GeoRad configuration and use a NIST calibrated cavity blackbody source, The NIST calibration is transferred to the TIRS sensor and to the blackbody source on-board TIRS, The onboard calibrator will be the primary calibration source for the TIRS sensor on orbit.

Terrestrial Applications of the Thermal Infrared Sensor, TIRS

NASA Technical Reports Server (NTRS)

Smith, Ramsey L.; Thome, Kurtis; Richardson, Cathleen; Irons, James; Reuter, Dennis

2009-01-01

Landsat satellites have acquired single-band thermal images since 1978. The next satellile in the heritage, Landsat Data Continuity Mission (LDCM), is scheduled to launch in December 2012. LDCM will contain the Operational Land Imager (OLI) and the Thermal Infrared Sensor (TIRS), where TIRS operates in concert with, but independently of OLI. This paper will provide an overview of the remote sensing instrument TIRS. The T1RS instrument was designed at National Aeronautics and Space Administration's (NASA) Goddard Space Flight Center (GSFC) where it will be fabricated and calibrated as well. Protecting the integrity of the Scientific Data that will be collected from TIRS played a strong role in definition of the calibration test equipment and procedures used for the optical, radiometric, and spatial calibration. The data that will be produced from LCDM will continue to be used world wide for environment monitoring and resource management.

Downscaling Thermal Infrared Radiance for Subpixel Land Surface Temperature Retrieval

PubMed Central

Liu, Desheng; Pu, Ruiliang

2008-01-01

Land surface temperature (LST) retrieved from satellite thermal sensors often consists of mixed temperature components. Retrieving subpixel LST is therefore needed in various environmental and ecological studies. In this paper, we developed two methods for downscaling coarse resolution thermal infrared (TIR) radiance for the purpose of subpixel temperature retrieval. The first method was developed on the basis of a scale-invariant physical model on TIR radiance. The second method was based on a statistical relationship between TIR radiance and land cover fraction at high spatial resolution. The two methods were applied to downscale simulated 990-m ASTER TIR data to 90-m resolution. When validated against the original 90-m ASTER TIR data, the results revealed that both downscaling methods were successful in capturing the general patterns of the original data and resolving considerable spatial details. Further quantitative assessments indicated a strong agreement between the true values and the estimated values by both methods. PMID:27879844

Downscaling Thermal Infrared Radiance for Subpixel Land Surface Temperature Retrieval.

PubMed

Liu, Desheng; Pu, Ruiliang

2008-04-06

Land surface temperature (LST) retrieved from satellite thermal sensors often consists of mixed temperature components. Retrieving subpixel LST is therefore needed in various environmental and ecological studies. In this paper, we developed two methods for downscaling coarse resolution thermal infrared (TIR) radiance for the purpose of subpixel temperature retrieval. The first method was developed on the basis of a scale-invariant physical model on TIR radiance. The second method was based on a statistical relationship between TIR radiance and land cover fraction at high spatial resolution. The two methods were applied to downscale simulated 990-m ASTER TIR data to 90-m resolution. When validated against the original 90-m ASTER TIR data, the results revealed that both downscaling methods were successful in capturing the general patterns of the original data and resolving considerable spatial details. Further quantitative assessments indicated a strong agreement between the true values and the estimated values by both methods.

The Role of TIR-NBS and TIR-X Proteins in Plant Basal Defense Responses1[W][OA

PubMed Central

Nandety, Raja Sekhar; Caplan, Jeffery L.; Cavanaugh, Keri; Perroud, Bertrand; Wroblewski, Tadeusz; Michelmore, Richard W.; Meyers, Blake C.

2013-01-01

Toll/interleukin receptor (TIR) domain-containing proteins encoded in the Arabidopsis (Arabidopsis thaliana) genome include the TIR-nucleotide binding site (TN) and TIR-unknown site/domain (TX) families. We investigated the function of these proteins. Transient overexpression of five TX and TN genes in tobacco (Nicotiana benthamiana) induced chlorosis. This induced chlorosis was dependent on ENHANCED DISEASE RESISTANCE1, a dependency conserved in both tobacco and Arabidopsis. Stable overexpression transgenic lines of TX and TN genes in Arabidopsis produced a variety of phenotypes associated with basal innate immune responses; these were correlated with elevated levels of salicylic acid. The TN protein AtTN10 interacted with the chloroplastic protein phosphoglycerate dehydrogenase in a yeast (Saccharomyces cerevisiae) two-hybrid screen; other TX and TN proteins interacted with nucleotide binding-leucine-rich repeat proteins and effector proteins, suggesting that TN proteins might act in guard complexes monitoring pathogen effectors. PMID:23735504

The role of TIR-NBS and TIR-X proteins in plant basal defense responses.

PubMed

Nandety, Raja Sekhar; Caplan, Jeffery L; Cavanaugh, Keri; Perroud, Bertrand; Wroblewski, Tadeusz; Michelmore, Richard W; Meyers, Blake C

2013-07-01

Toll/interleukin receptor (TIR) domain-containing proteins encoded in the Arabidopsis (Arabidopsis thaliana) genome include the TIR-nucleotide binding site (TN) and TIR-unknown site/domain (TX) families. We investigated the function of these proteins. Transient overexpression of five TX and TN genes in tobacco (Nicotiana benthamiana) induced chlorosis. This induced chlorosis was dependent on ENHANCED DISEASE RESISTANCE1, a dependency conserved in both tobacco and Arabidopsis. Stable overexpression transgenic lines of TX and TN genes in Arabidopsis produced a variety of phenotypes associated with basal innate immune responses; these were correlated with elevated levels of salicylic acid. The TN protein AtTN10 interacted with the chloroplastic protein phosphoglycerate dehydrogenase in a yeast (Saccharomyces cerevisiae) two-hybrid screen; other TX and TN proteins interacted with nucleotide binding-leucine-rich repeat proteins and effector proteins, suggesting that TN proteins might act in guard complexes monitoring pathogen effectors.

Teaching resources. Model of the TIR1 pathway for auxin-mediated gene expression.

PubMed

Laskowski, Marta

2006-02-14

Auxin mediates numerous plant responses, some of which have been shown to require transcriptional regulation. One auxin response pathway, which depends on the relief of transcriptional repression, is mediated by TIR1 (transport inhibitor response protein 1). TIR1 is an auxin receptor and also a subunit of an SCF-type ubiquitin ligase. In the presence of a low concentration of auxin in the nucleus, members of the Aux/IAA family of transcriptional repressors bind to ARF proteins and inhibit the transcription of specific auxin response genes. Increased nuclear concentrations of auxin promote auxin binding to TIR1, causing the Aux/IAA proteins to associate with TIR1 and leading to their degradation by a proteasome-mediated pathway. This decreases the concentration of Aux/IAA proteins in the nucleus and thereby enables the expression of certain auxin response genes.

Geospatial approach towards enumerative analysis of suspended sediment concentration for Ganges-Brahmaputra Bay

NASA Astrophysics Data System (ADS)

Pandey, Palak; Kunte, Pravin D.

2016-10-01

This study presents an easy, modular, user-friendly, and flexible software package for processing of Landsat 7 ETM and Landsat 8 OLI-TIRS data for estimating suspended particulate matter concentrations in the coastal waters. This package includes 1) algorithm developed using freely downloadable SCILAB package, 2) ERDAS Models for iterative processing of Landsat images and 3) ArcMAP tool for plotting and map making. Utilizing SCILAB package, a module is written for geometric corrections, radiometric corrections and obtaining normalized water-leaving reflectance by incorporating Landsat 8 OLI-TIRS and Landsat 7 ETM+ data. Using ERDAS models, a sequence of modules are developed for iterative processing of Landsat images and estimating suspended particulate matter concentrations. Processed images are used for preparing suspended sediment concentration maps. The applicability of this software package is demonstrated by estimating and plotting seasonal suspended sediment concentration maps off the Bengal delta. The software is flexible enough to accommodate other remotely sensed data like Ocean Color monitor (OCM) data, Indian Remote Sensing data (IRS), MODIS data etc. by replacing a few parameters in the algorithm, for estimating suspended sediment concentration in coastal waters.

Thermal infrared data analyses of Meteor Crater, Arizona: Implications for Mars spaceborne data from the Thermal Emission Imaging System

NASA Astrophysics Data System (ADS)

Wright, Shawn P.; Ramsey, Michael S.

2006-02-01

Thermal infrared (TIR) data from the Earth-orbiting Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument are used to identify the lithologic distribution of the Meteor Crater ejecta blanket. Thermal emission laboratory spectra were obtained for collected samples, and spectral deconvolution was performed on ASTER emissivity data using both image and sample end-members. Comparison of the spaceborne ASTER data to the airborne Thermal Infrared Multispectral Scanner (TIMS) data was used to validate the ASTER end-member analyses. The ASTER image end-member analysis agrees well with past studies considering the effects of resolution degradation. The work at Meteor Crater has direct bearing on the interpretation of Thermal Emission Imaging System (THEMIS) data currently being returned from Mars. ASTER and THEMIS have similar spatial and spectral resolutions, and Meteor Crater serves as an analog for similar-sized impact sites on Mars. These small impact craters have not been studied in detail owing to the low spatial resolution of past orbiting TIR instruments. Using the same methodology as that applied to Meteor Crater, THEMIS TIR data of a provisionally named Winslow Crater (~1 km) impact crater in Syrtis Major are analyzed. The crater rim and ejecta blanket were found to contain larger block sizes and a lower albedo than the surrounding ejecta-free plain, indicating a young impact age. The composition of the rim, ejecta, and surrounding plain is determined to be dominated by basalt; however, potential stratigraphy has also been identified. Results of this work could be extended to future investigations using THEMIS data.

Development of low cost and accurate homemade sensor system based on Surface Plasmon Resonance (SPR)

NASA Astrophysics Data System (ADS)

Laksono, F. D.; Supardianningsih; Arifin, M.; Abraha, K.

2018-04-01

In this paper, we developed homemade and computerized sensor system based on Surface Plasmon Resonance (SPR). The developed systems consist of mechanical system instrument, laser power sensor, and user interface. The mechanical system development that uses anti-backlash gear design was successfully able to enhance the angular resolution angle of incidence laser up to 0.01°. In this system, the laser detector acquisition system and stepper motor controller utilizing Arduino Uno which is easy to program, flexible, and low cost, was used. Furthermore, we employed LabView’s user interface as the virtual instrument for facilitating the sample measurement and for transforming the data recording directly into the digital form. The test results using gold-deposited half-cylinder prism showed the Total Internal Reflection (TIR) angle of 41,34°± 0,01° and SPR angle of 44,20°± 0,01°, respectively. The result demonstrated that the developed system managed to reduce the measurement duration and data recording errors caused by human error. Also, the test results also concluded that the system’s measurement is repeatable and accurate.

In silico analysis of Schmidtea mediterranea TIR domain-containing proteins.

PubMed

Tsoumtsa, Landry Laure; Sougoufora, Seynabou; Torre, Cedric; Lemichez, Emmanuel; Pontarotti, Pierre; Ghigo, Eric

2018-09-01

While genetic evidence points towards an absence of Toll-Like Receptors (TLRs) in Platyhelminthes, the Toll/IL-1 Receptor (TIR)-domains that drive the assembly of signalling complexes downstream TLR are present in these organisms. Here, we undertook the characterisation of the repertoire of TIR-domain containing proteins in Schmidtea mediterranea in order to gain valuable information on TLR evolution in metazoan. We report the presence of twenty proteins containing between one and two TIR domains. In addition, our phylogenetic-based reconstruction approach identified Smed-SARM and Smed-MyD88 as conserved TLR adaptors. Copyright © 2018 Elsevier Ltd. All rights reserved.

The soluble extracellular domain of E-cadherin interferes with EPEC adherence via interaction with the Tir:intimin complex.

PubMed

Login, Frédéric H; Jensen, Helene H; Pedersen, Gitte A; Amieva, Manuel R; Nejsum, Lene N

2018-06-19

Enteropathogenic Escherichia coli (EPEC) causes watery diarrhea when colonizing the surface of enterocytes. The translocated intimin receptor (Tir):intimin receptor complex facilitates tight adherence to epithelial cells and formation of actin pedestals beneath EPEC. We found that the host cell adherens junction protein E-cadherin (Ecad) was recruited to EPEC microcolonies. Live-cell and confocal imaging revealed that Ecad recruitment depends on, and occurs after, formation of the Tir:intimin complex. Combinatorial binding experiments using wild-type EPEC, isogenic mutants lacking Tir or intimin, and E. coli expressing intimin showed that the extracellular domain of Ecad binds the bacterial surface in a Tir:intimin-dependent manner. Finally, addition of the soluble extracellular domain of Ecad to the infection medium or depletion of Ecad extracellular domain from the cell surface reduced EPEC adhesion to host cells. Thus, the soluble extracellular domain of Ecad may be used in the design of intervention strategies targeting EPEC adherence to host cells.-Login, F. H., Jensen, H. H., Pedersen, G. A., Amieva, M. R., Nejsum, L. N. The soluble extracellular domain of E-cadherin interferes with EPEC adherence via interaction with the Tir:intimin complex.

Cytosolic Extract Induces Tir Translocation and Pedestals in EPEC-Infected Red Blood Cells

PubMed Central

Swimm, Alyson I; Kalman, Daniel

2008-01-01

Enteropathogenic Escherichia coli (EPEC) are deadly contaminants in water and food, and induce protrusion of actin-filled membranous pedestals beneath themselves upon attachment to intestinal epithelia. Pedestal formation requires clustering of Tir and subsequent recruitment of cellular tyrosine kinases including Abl, Arg, and Etk as well as signaling molecules Nck, N-WASP, and Arp2/3 complex. We have developed a cytosolic extract-based cellular system that recapitulates actin pedestal formation in permeabilized red blood cells (RBC) infected with EPEC. RBC support attachment of EPEC and translocation of virulence factors, but not pedestal formation. We show here that extract induces a rapid Ca++-dependent release of Tir from the EPEC Type III secretion system, and that cytoplasmic factor(s) present in the extract facilitate translocation of Tir into the RBC plasma membrane. We show that Abl and related kinases in the extract phosphorylate Tir and that actin polymerization can be reconstituted in infected RBC following addition of cytosolic extract. Reconstitution requires the bacterial virulence factors Tir and intimin, and phosphorylation of Tir on tyrosine residue 474 results in the recruitment of Nck, N-WASP, and Arp2/3 complex beneath attached bacteria at sites of actin polymerization. Together these data describe a biochemical system for dissection of host components that mediate Type III secretion and the mechanisms by which complexes of proteins are recruited to discrete sites within the plasma membrane to initiate localized actin polymerization and morphological changes. PMID:18208322

An Overview of the Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Irons, James R.; Dwyer, John L.

2010-01-01

The advent of the Landsat Data Continuity Mission (LDCM), currently with a launch readiness date of December, 2012, will see evolutionary changes in the Landsat data products available from the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center. The USGS initiated a revolution in 2009 when EROS began distributing Landsat data products at no cost to requestors in contrast to the past practice of charging the cost of fulfilling a request; that is, charging $600 per Landsat scene. To implement this drastic change, EROS terminated data processing options for requestors and began to produce all data products using a consistent processing recipe. EROS plans to continue this practice for the LDCM and will required new algorithms to process data from the LDCM sensors. All previous Landsat satellites flew multispectral scanners to collect image data of the global land surface. Additionally, Landsats 4, 5, and 7 flew sensors that acquired imagery for both reflective spectral bands and a single thermal band. In contrast, the LDCM will carry two pushbroom sensors; the Operational Land Imager (OLI) for reflective spectral bands and the Thermal InfraRed Sensor (TIRS) for two thermal bands. EROS is developing the ground data processing system that will both calibrate and correct the data from the thousands of detectors employed by the pushbroom sensors and that will also combine the data from the two sensors to create a single data product with registered data for all of the OLI and TIRS bands.

An initial assessment of a SMAP soil moisture disaggregation scheme using TIR surface evaporation data over the continental United States

NASA Astrophysics Data System (ADS)

Mishra, Vikalp; Ellenburg, W. Lee; Griffin, Robert E.; Mecikalski, John R.; Cruise, James F.; Hain, Christopher R.; Anderson, Martha C.

2018-06-01

The Soil Moisture Active Passive (SMAP) mission is dedicated toward global soil moisture mapping. Typically, an L-band microwave radiometer has spatial resolution on the order of 36-40 km, which is too coarse for many specific hydro-meteorological and agricultural applications. With the failure of the SMAP active radar within three months of becoming operational, an intermediate (9-km) and finer (3-km) scale soil moisture product solely from the SMAP mission is no longer possible. Therefore, the focus of this study is a disaggregation of the 36-km resolution SMAP passive-only surface soil moisture (SSM) using the Soil Evaporative Efficiency (SEE) approach to spatial scales of 3-km and 9-km. The SEE was computed using thermal-infrared (TIR) estimation of surface evaporation over Continental U.S. (CONUS). The disaggregation results were compared with the 3 months of SMAP-Active (SMAP-A) and Active/Passive (AP) products, while comparisons with SMAP-Enhanced (SMAP-E), SMAP-Passive (SMAP-P), as well as with more than 180 Soil Climate Analysis Network (SCAN) stations across CONUS were performed for a 19 month period. At the 9-km spatial scale, the TIR-Downscaled data correlated strongly with the SMAP-E SSM both spatially (r = 0.90) and temporally (r = 0.87). In comparison with SCAN observations, overall correlations of 0.49 and 0.47; bias of -0.022 and -0.019 and unbiased RMSD of 0.105 and 0.100 were found for SMAP-E and TIR-Downscaled SSM across the Continental U.S., respectively. At 3-km scale, TIR-Downscaled and SMAP-A had a mean temporal correlation of only 0.27. In terms of gain statistics, the highest percentage of SCAN sites with positive gains (>55%) was observed with the TIR-Downscaled SSM at 9-km. Overall, the TIR-based downscaled SSM showed strong correspondence with SMAP-E; compared to SCAN, and overall both SMAP-E and TIR-Downscaled performed similarly, however, gain statistics show that TIR-Downscaled SSM slightly outperformed SMAP-E.

The Evolution of Landsat Data Systems and Science Products

NASA Astrophysics Data System (ADS)

Dwyer, J. L.

2011-12-01

The series of Landsat satellite missions have collected observations of the Earth's surface since 1972, resulting in the richest archive of remotely sensed data covering the global land masses at scales from which natural and human-induced changes can be distinguished. This observational record will continue to be extended with the launch of the Landsat Data Continuity Mission, or Landsat 8, in December of 2012 carrying the Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS) instruments. The data streams from these instruments will be significantly enhanced yet compatible with data acquired by heritage Landsat instruments. The radiometry and geometry of the OLI and TIRS data will be calibrated and combined into single, multi-band Level-1 terrain-corrected image products. Coefficients will be included in the product metadata to convert OLI to at-sensor radiance or reflectance and to convert TIRS data to at-aperture radiances. A quality assurance band will contain pixel-based information regarding the presences or clouds, shadows, and terrain occlusion. The raw data as well as the Level-1 products will be stored online and made freely accessible through web coverage services. Rescaled Level-1 OLI and TIRS images will be made available via web mapping services to enable inventory searches and for ready use in geospatial applications. The architecture of the Landsat science data processing systems is scalable to accommodate additional processing and storage nodes in response to archive growth and increased demands on processing and distribution. The data collected by the various Landsat instruments have been inter-calibrated to enable the generation of higher level science data products that are of consistent quality through time and from which geophysical and biophysical parameters of the land surface can be derived for use in process models and decision support systems. Data access and delivery services have evolved in response to increasing demand for Landsat data in a broad range of applications, and the demand for additional processing capabilities and services is expected to grow in the future to meet the needs for climate data records and essential climate variables.

Real-Time Monitoring of Azo Dye Interfacial Adsorption at Silica-Water Interface by Total Internal Reflection-Induced Surface Evanescent Wave.

PubMed

Xiong, Yan; Wang, Qing; Duan, Ming; Tan, Jun; Fang, Shenwen; Wu, Jiayi

2018-06-19

An interface research method based on total internal reflection induced evanescent wave (TIR-EW) is developed to monitor the adsorption behavior of azo dye at the silica-water interface. The monitoring system is constructed by employing silica optical fiber (SOF) as both charged substrate for dye adsorption and light transmission waveguide for evanescent wave production. According to the change of evanescent wave intensity and followed by Beer's law, the methylene blue (MB) adsorption behavior can be real-time monitored at the silica-water interface. Langmuir adsorption model and pseudo-first-order model are applied to obtain the related thermodynamic and kinetic data. The adsorption equilibrium constant ( K ads ) and adsorption free energy (Δ G) of MB at the silica-water interface are determined to be (3.3 ± 0.5) × 10 4 M -1 and -25.7 ± 1.7 kJ mol -1 . Meanwhile, this method is highlighted to isolate elementary processes of adsorption and desorption under steady-state conditions, and gives adsorption rate constant ( k a ) and desorption rate constant ( k d ) of 8585 ± 19.8 min -1 and 0.26 ± 0.0006 min -1 for 15 r/min flow rate. The surface interaction process is revealed and adsorption mechanism is proposed, indicating MB first adsorbed on Si-O - sites through electrostatic attraction and then on Si-OH sites through hydrogen bond with increasing MB concentrations. Our findings from this study provided molecular-level interpretation of azo dye adsorption at silica-water interface, and the results provide important insight into how MB adsorption can be controlled at the interface.

The EarthCARE multi spectral imager thermal infrared optical unit

NASA Astrophysics Data System (ADS)

Chang, M. P. J. L.; Woods, D.; Baister, Guy; Lobb, Dan; Wood, Trevor

2017-11-01

The EarthCARE satellite mission objective is the observation of clouds and aerosols from low Earth orbit. The key spatial context providing instrument within the payload suite of 4 instruments is the Multi-Spectral Imager (MSI), previously described in [1]. The MSI is intended to provide information on the horizontal variability of the atmospheric conditions and to identify e.g. cloud type, textures, and temperature. It will form Earth images at 500m ground sample distance (GSD) over a swath width of 150km; it will image Earth in 7 spectral bands: one visible, one near-IR, two short-wave IR and three thermal IR. The instrument will be comprised of two key parts: • a visible-NIR-SWIR (VNS) optical unit radiometrically calibrated using a sun illuminated quasivolume diffuser and shutter system • a thermal IR (TIR) optical unit radiometrically calibrated using cold space and an internal black-body. This paper, being the first of a sequence of two, will provide an overview of the MSI and enter into more detail the critical performance parameters and detailed design the MSI TIR optical design. The TIR concept is to provide pushbroom imaging of its 3 bands through spectral separation from a common aperture. The result is an efficient, well controlled optical design without the need for multiple focal plane arrays. The designed focal plane houses an area array detector and will meet a challenging set of requirements, including radiometric resolution, accuracy, distortion and MTF.

Robust Satellite Techniques to support the short-term assessment of the seismic hazard in Japan: an analysis on 11 years (2005-2015) of MTSAT TIR observations

NASA Astrophysics Data System (ADS)

Genzano, Nicola; Filizzola, Carolina; Hattori, Katsumi; Lisi, Mariano; Paciello, Rossana; Pergola, Nicola; Tramutoli, Valerio

2017-04-01

In order to increase reliability and precision of short-term seismic hazard assessment (but also a possible earthquakes forecast), the integration of different kinds of observations (chemical, physical, biological, etc.) in a multi-parametric approach could be a useful strategy to be undertaken. Among the different observational methodologies, the fluctuations of Earth's thermally emitted radiation, measured by satellite sensors operating in the thermal infrared (TIR) spectral range, have been proposed since eighties as a potential earthquake precursor. Since 2001, the general change detention approach Robust Satellite Techniques (RST), used in combination with RETIRA (Robust Estimator of TIR Anomalies) index, showed good ability to discriminate anomalous TIR signals possibly associated to seismic activity, from the normal variability of TIR signal due to other causes (e.g. meteorological). In this paper, the RST data analysis approach has been implemented on TIR satellite records collected over Japan by the geostationary satellite sensor MTSAT (Multifunctional Transport SATellites) in the period June 2005 - December 2015 in order to evaluate its possible contribute to an improved multi parametric system for a time-Dependent Assessment of Seismic Hazard (t-DASH). For the first time, thermal anomalies have been identified comparing the daily TIR radiation of each location of the considered satellite portions, with its historical expected value and variation range (i.e. RST reference fields) computed using a a 30 days moving window (i.e. 15 days before and 15 days after the considered day of the year) instead than fixed monthly window. Preliminary results of correlation analysis among the appearance of Significant Sequences of TIR Anomalies (SSTAs) and time, location and magnitude of earthquakes (M≥5), performed by applying predefined space-temporal and magnitude constraints, show that 80% of SSTAs were in an apparent space-time relations with earthquakes with a false alarm rate of 20%.

Application of transmission infrared spectroscopy and partial least squares regression to predict immunoglobulin G concentration in dairy and beef cow colostrum.

PubMed

Elsohaby, Ibrahim; Windeyer, M Claire; Haines, Deborah M; Homerosky, Elizabeth R; Pearson, Jennifer M; McClure, J Trenton; Keefe, Greg P

2018-03-06

The objective of this study was to explore the potential of transmission infrared (TIR) spectroscopy in combination with partial least squares regression (PLSR) for quantification of dairy and beef cow colostral immunoglobulin G (IgG) concentration and assessment of colostrum quality. A total of 430 colostrum samples were collected from dairy (n = 235) and beef (n = 195) cows and tested by a radial immunodiffusion (RID) assay and TIR spectroscopy. Colostral IgG concentrations obtained by the RID assay were linked to the preprocessed spectra and divided into combined and prediction data sets. Three PLSR calibration models were built: one for the dairy cow colostrum only, the second for beef cow colostrum only, and the third for the merged dairy and beef cow colostrum. The predictive performance of each model was evaluated separately using the independent prediction data set. The Pearson correlation coefficients between IgG concentrations as determined by the TIR-based assay and the RID assay were 0.84 for dairy cow colostrum, 0.88 for beef cow colostrum, and 0.92 for the merged set of dairy and beef cow colostrum. The average of the differences between colostral IgG concentrations obtained by the RID- and TIR-based assays were -3.5, 2.7, and 1.4 g/L for dairy, beef, and merged colostrum samples, respectively. Further, the average relative error of the colostral IgG predicted by the TIR spectroscopy from the RID assay was 5% for dairy cow, 1.2% for beef cow, and 0.8% for the merged data set. The average intra-assay CV% of the IgG concentration predicted by the TIR-based method were 3.2%, 2.5%, and 6.9% for dairy cow, beef cow, and merged data set, respectively.The utility of TIR method for assessment of colostrum quality was evaluated using the entire data set and showed that TIR spectroscopy accurately identified the quality status of 91% of dairy cow colostrum, 95% of beef cow colostrum, and 89% and 93% of the merged dairy and beef cow colostrum samples, respectively. The results showed that TIR spectroscopy demonstrates potential as a simple, rapid, and cost-efficient method for use as an estimate of IgG concentration in dairy and beef cow colostrum samples and assessment of colostrum quality. The results also showed that merging the dairy and beef cow colostrum sample data sets improved the predictive ability of the TIR spectroscopy.

An airborne thematic thermal infrared and electro-optical imaging system

NASA Astrophysics Data System (ADS)

Sun, Xiuhong; Shu, Peter

2011-08-01

This paper describes an advanced Airborne Thematic Thermal InfraRed and Electro-Optical Imaging System (ATTIREOIS) and its potential applications. ATTIREOIS sensor payload consists of two sets of advanced Focal Plane Arrays (FPAs) - a broadband Thermal InfraRed Sensor (TIRS) and a four (4) band Multispectral Electro-Optical Sensor (MEOS) to approximate Landsat ETM+ bands 1,2,3,4, and 6, and LDCM bands 2,3,4,5, and 10+11. The airborne TIRS is 3-axis stabilized payload capable of providing 3D photogrammetric images with a 1,850 pixel swathwidth via pushbroom operation. MEOS has a total of 116 million simultaneous sensor counts capable of providing 3 cm spatial resolution multispectral orthophotos for continuous airborne mapping. ATTIREOIS is a complete standalone and easy-to-use portable imaging instrument for light aerial vehicle deployment. Its miniaturized backend data system operates all ATTIREOIS imaging sensor components, an INS/GPS, and an e-Gimbal™ Control Electronic Unit (ECU) with a data throughput of 300 Megabytes/sec. The backend provides advanced onboard processing, performing autonomous raw sensor imagery development, TIRS image track-recovery reconstruction, LWIR/VNIR multi-band co-registration, and photogrammetric image processing. With geometric optics and boresight calibrations, the ATTIREOIS data products are directly georeferenced with an accuracy of approximately one meter. A prototype ATTIREOIS has been configured. Its sample LWIR/EO image data will be presented. Potential applications of ATTIREOIS include: 1) Providing timely and cost-effective, precisely and directly georeferenced surface emissive and solar reflective LWIR/VNIR multispectral images via a private Google Earth Globe to enhance NASA's Earth science research capabilities; and 2) Underflight satellites to support satellite measurement calibration and validation observations.

Robust Satellite Techniques analysis of ten years (2004-2013) of MSG/SEVIRI TIR radiances over Greece region

NASA Astrophysics Data System (ADS)

Genzano, N.; Eleftheriou, A.; Filizzola, C.; Paciello, R.; Pergola, N.; Vallianatos, F.; Tramutoli, V.

2014-12-01

Space-time fluctuations of Earth's emitted Thermal InfraRed (TIR) radiation have been observed from satellite months to weeks before earthquakes occurrence. Among the different approach proposed to discern transient anomalous signals possibly associated to seismic activity from normal TIR signal fluctuations (i.e. related to the change of natural factor and/or observation conditions), since 2001 the Robust Satellite Techniques (RST) were used to investigate tens of earthquakes with a wide range of magnitudes (from 4.0 to 7.9) occurred in different continents and in various geo-tectonic setting (e.g. Athens earthquake, 7 September 1999; Abruzzo earthquake, 6 April 2009, etc.).The RST approach gives a statistically - based definition of "TIR anomalies" and offers a suitable method for their identification even in very different local (e.g. related to atmosphere and/or surface) and observational (e.g. related to time/season, but also to solar and satellite zenithal angles) conditions. It has been always carried out by using a validation/confutation approach, to verify the presence/absence of anomalous space-time TIR transients in the presence/absence of seismic activity.In this paper, the RST approach is extensively implemented on 10 years of TIR satellite records collected by the geostationary satellite sensor MSG/SEVIRI over the Greece region. The results of the analysis performed to investigate possible correlations (within predefined space-time windows) of anomalous TIR transients with time and place of occurrence of earthquakes with M>4 will be discussed in terms of reliability and effectiveness also in the perspective of a time-Dependent Assessment of Seismic Hazard (t-DASH) system.

Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization

PubMed Central

Zhan, Chendi; Qi, Ruxi; Wei, Guanghong; Guven-Maiorov, Emine; Nussinov, Ruth; Ma, Buyong

2016-01-01

MyD88 is an essential adaptor protein, which mediates the signaling of the toll-like and interleukin-1 receptors’ superfamily. The MyD88 L252P (L265P) mutation has been identified in diffuse large B-cell lymphoma. The identification of this mutation has been a major advance in the diagnosis of patients with aldenstrom macroglobulinemia and related lymphoid neoplasms. Here we used computational methods to characterize the conformational effects of the mutation. Our molecular dynamics simulations revealed that the mutation allosterically quenched the global conformational dynamics of the toll/IL-1R (TIR) domain, and readjusted its salt bridges and dynamic community network. Specifically, the mutation changed the orientation and reduced the fluctuation of α-helix 3, possibly through eliminating/weakening ~8 salt bridges and enhancing the salt bridge D225-K258. Using the energy landscape of the TIR domains of MyD88, we identified two dynamic conformational basins, which correspond to the binding sites used in homo- and hetero-oligomerization, respectively. Our results indicate that the mutation stabilizes the core of the homo-dimer interface of the MyD88-TIR domain, and increases the population of homo-dimer-compatible conformational states in MyD88 family proteins. However, the dampened motion restricts its ability to heterodimerize with other TIR domains, thereby curtailing physiological signaling. In conclusion, the L252P both shifts the landscape toward homo-dimerization and restrains the dynamics of the MyD88-TIR domain, which disfavors its hetero-dimerization with other TIR domains. We further put these observations within the framework of MyD88-mediated cell signaling. PMID:27503954

Introduction to the Special Session on Thermal Remote Sensing Data for Earth Science Research: The Critical Need for Continued Data Collection and Development of Future Thermal Satellite Sensors

NASA Technical Reports Server (NTRS)

Quattrochi, Dale a.; Luvall, Jeffrey C.; Anderson, Martha; Hook, Simon

2006-01-01

There is a rich and long history of thermal infrared (TIR) remote sensing data for multidisciplinary Earth science research. The continuity of TIR data collection, however, is now in jeopardy given there are no planned future Earth observing TIR remote sensing satellite systems with moderately high spatial resolutions to replace those currently in orbit on NASA's Terra suite of sensors. This session will convene researchers who have actively worked in the field of TIR remote sensing to present results that elucidate the importance of thermal remote sensing to the wider Earth science research community. Additionally, this session will also exist as a forum for presenting concepts and ideas for new thermal sensing systems with high spatial resolutions for future Earth science satellite missions, as opposed to planned systems such as the Visible/Infrared Imager/Radiometer (VIIRS) suite of sensors on the National Polar-orbiting Operational Environmental Satellite System (NPOESS) that will collect TIR data at very coarse iairesolutions.

Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity

PubMed Central

Padmanabhan, Meenu S.; Ma, Shisong; Burch-Smith, Tessa M.; Czymmek, Kirk; Huijser, Peter; Dinesh-Kumar, Savithramma P.

2013-01-01

Following the recognition of pathogen-encoded effectors, plant TIR-NB-LRR immune receptors induce defense signaling by a largely unknown mechanism. We identify a novel and conserved role for the SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-domain transcription factor SPL6 in enabling the activation of the defense transcriptome following its association with a nuclear-localized immune receptor. During an active immune response, the Nicotiana TIR-NB-LRR N immune receptor associates with NbSPL6 within distinct nuclear compartments. NbSPL6 is essential for the N-mediated resistance to Tobacco mosaic virus. Similarly, the presumed Arabidopsis ortholog AtSPL6 is required for the resistance mediated by the TIR-NB-LRR RPS4 against Pseudomonas syringae carrying the avrRps4 effector. Transcriptome analysis indicates that AtSPL6 positively regulates a subset of defense genes. A pathogen-activated nuclear-localized TIR-NB-LRR like N can therefore regulate defense genes through SPL6 in a mechanism analogous to the induction of MHC genes by mammalian immune receptors like CIITA and NLRC5. PMID:23516366

Multi-sensor fusion of Landsat 8 thermal infrared (TIR) and panchromatic (PAN) images.

PubMed

Jung, Hyung-Sup; Park, Sung-Whan

2014-12-18

Data fusion is defined as the combination of data from multiple sensors such that the resulting information is better than would be possible when the sensors are used individually. The multi-sensor fusion of panchromatic (PAN) and thermal infrared (TIR) images is a good example of this data fusion. While a PAN image has higher spatial resolution, a TIR one has lower spatial resolution. In this study, we have proposed an efficient method to fuse Landsat 8 PAN and TIR images using an optimal scaling factor in order to control the trade-off between the spatial details and the thermal information. We have compared the fused images created from different scaling factors and then tested the performance of the proposed method at urban and rural test areas. The test results show that the proposed method merges the spatial resolution of PAN image and the temperature information of TIR image efficiently. The proposed method may be applied to detect lava flows of volcanic activity, radioactive exposure of nuclear power plants, and surface temperature change with respect to land-use change.

Novel aplanatic designs for LED concentration

NASA Astrophysics Data System (ADS)

Ricketts, Melissa; Winston, Roland; Jiang, Lun

2014-09-01

Aplanats make great concentrators because of their near perfect imaging. Aplanatic conditions can be satisfied using two surface curves (generally mirrored surfaces) in two dimensions (see Figure 1) which are constructed by successive approximation to create a highly efficient concentrator for both concentration and illumination. For concentration purposes, having a two mirror system would be impossible because the front mirror would block incoming light (see figure 2) so the idea is to replace the front mirror with a "one-way" mirror. Light from a lower index can be transmitted, so if the aplanat surface is a higher index light is allowed to enter, and be trapped. In the Jellyfish design, TIR takes place except for light striking the surface within the range of critical angles. To combat that, a small area of reflective coating is applied to the central top part of the Jellyfish, where TIR fails (In the middle) to keep the light there from directly escaping (see figure 3). The design works in both forwards and reverse. Light entering can be focused to a collecter, or the collecter can be replaced with a light source to concentrate light out. In this case, LEDs are used for their highly efficienct properties.

Analogue Materials Measured Under Simulated Lunar and Asteroid Environments: Application to Thermal Infrared Measurements of Airless Bodies

NASA Astrophysics Data System (ADS)

Donaldson Hanna, K. L.; Pieters, C. M.; Patterson, W., III; Moriarty, D.

2012-12-01

Remote sensing observations provide key insights into the composition and evolution of planetary surfaces. A fundamentally important component to any remote sensing study of planetary surfaces is laboratory measurements of well-characterized samples measured under the appropriate environmental conditions. The near-surface vacuum environment of airless bodies like the Moon and asteroids creates a thermal gradient in the upper hundred microns of regolith. Lab studies of particulate rocks and minerals as well as selected lunar soils under vacuum and lunar-like conditions have identified significant effects of this thermal gradient on thermal infrared (TIR) spectral measurements [e.g. Logan et al. 1973, Salisbury and Walter 1989, Thomas et al. 2010, Donaldson Hanna et al. 2012]. Compared to ambient conditions, these effects include: (1) the Christiansen feature (CF), an emissivity maximum diagnostic of mineralogy and average composition, shifts to higher wavenumbers and (2) an increase in spectral contrast of the CF relative to the Reststrahlen bands (RB), the fundamental molecular vibration bands due to Si-O stretching and bending. Such lab studies demonstrate the high sensitivity of TIR emissivity spectra to environmental conditions under which they are measured. The Asteroid and Lunar Environment Chamber (ALEC) is the newest addition to the RELAB at Brown University. The vacuum chamber simulates the space environment experienced by the near-surface soils of the Moon and asteroids. The internal rotation stage allows for six samples and two blackbodies to be measured without breaking vacuum (<10-4 mbar). Liquid nitrogen is used to cool the interior of the chamber, creating a cold, low emission environment (mimicking the space environment) for heated samples to radiate into. Sample cups can be heated in one of three configurations: (1) from below using heaters embedded in the base of the sample cup, (2) from above using a solar-like radiant heat source, and (3) from below and above to allow the magnitude of the thermal gradient to be examined. ALEC is connected to RELAB's Thermo Nicolet FTIR spectrometer which allows laboratory emissivity spectra to be collected at a resolution of 4 cm-1 over a nominal ~400 - 7400 cm-1 spectral range. An initial set of experiments have been run to understand how variations in the internal chamber pressure, power from the solar-like halogen lamp, and sample cup temperature affect spectral measurements of fine particulate (< 25 μm) mineral separates. These early results corroborate previous lab measurements showing the sensitivity of TIR spectra to the conditions under which they are measured and for the first time illustrates how the pressure and the thermal gradient each contribute to the changes in TIR spectral measurements. Spectral measurements of lunar soils under varying controlled conditions will be compared with Diviner data to understand how to accurately simulate conditions of the real near-surface environment of the Moon. Once conditions are constrained future spectral measurements will focus on building a spectral library of well-characterized minerals, rocks, soils, and meteorites measured under lunar environmental conditions. Such measurements are essential to interpret current TIR datasets like Diviner and future missions like OSIRIS-REx.

ASTER spectral sensitivity of carbonate rocks - Study in Sultanate of Oman

NASA Astrophysics Data System (ADS)

Rajendran, Sankaran; Nasir, Sobhi

2014-02-01

Remote sensing satellite data plays a vital role and capable in detecting minerals and discriminating rock types for explorations of mineral resources and geological studies. Study of spectral absorption characters of remotely sensed data are under consideration by the exploration and mining companies, and demonstrating the spectral absorption characters of carbonates on the cost-effective multispectral image (rather than the hyperspectral, Lidar image) for easy understanding of all geologists and exploration communities of carbonates is very much important. The present work is an integrated study and an outcome of recently published works on the economic important carbonate rocks, includes limestone, marl, listwaenites and carbonatites occurred in parts of the Sultanate of Oman. It demonstrates the spectral sensitivity of such rocks for simple interpretation over satellite data and describes and distinguishes them based on the absorptions of carbonate minerals in the spectral bands of advanced spaceborne thermal emission and reflection radiometer (ASTER) for mapping and exploration studies. The study results that the ASTER spectral band 8 discriminates the carbonate rocks due to the presence of predominantly occurred carbonate minerals; the ASTER band 5 distinguishes the limestones and marls (more hydroxyl clay minerals) from listwaenite (hydrothermally altered rock) due to the presence of altered minerals and the ASTER band 4 detects carbonatites (ultramafic intrusive alkaline rocks) which contain relatively more silicates. The study on the intensity of the total absorptions against the reflections of these rocks shows that the limestones and marls have low intensity in absorptions (and high reflection values) due to the presence of carbonate minerals (calcite and dolomite) occurred in different proportions. The listwaenites and carbonatites have high intensity of absorptions (low reflection values) due to the occurrence of Mn-oxide in listwaenites and carbonates in carbonatites apart the influence of major carbonate minerals that occurred predominantly in these rocks. The study of ASTER thermal infrared (TIR) spectral bands distinguished the marls have low emissivity of energy due to the presence of hydroxyl bearing alumina-silicate minerals from the other rocks such as limestones, listwaenites and carbonatites which have high emissivity due to the absence of hydroxyl bearing alumina-silicate minerals and the presence of carbonate minerals and carbonates. Further, the study demonstrates and confirms the spectral sensitivity of marls and carbonatites. Marls have high reflectivity in ASTER visible near infrared (VNIR) and shortwave infrared (SWIR) spectral bands and low emissivity of energy in ASTER TIR spectral bands due to the presence of hydroxyl bearing alumina-silicate minerals. Carbonatites have low reflectivity in ASTER VNIR-SWIR spectral bands and high emissivity in ASTER TIR spectral bands due to the absence of hydroxyl bearing alumina-silicate minerals and the presence of the carbonate minerals and carbonates. These have been discussed by providing the grey scale color image of 14 ASTER spectral bands of the study sites. The study is based on the interpretation of image spectra of multispectral image conducted to map such economic valuable carbonate rocks. It provides a simple methods and basic knowledge, which are of great help to the geology and exploration communities. It is recommended to the geologists, industrialists, exploration communities of carbonates and mine owners to take up the knowledge for economic exploration of such deposits. Further, the study has proved that the technique is time and cost effective in mapping of such deposits and can be used to the areas which have extremely rugged topography occurred in similar arid region, where difficult to do exhaustive sampling and not reachable for conventional geological mapping.

Radiometric characterization of Landsat Collection 1 products

USGS Publications Warehouse

Micijevic, Esad; Haque, Md. Obaidul; Mishra, Nischal

2017-01-01

Landsat data in the U.S. Geological Survey (USGS) archive are being reprocessed to generate a tiered collection of consistently geolocated and radiometrically calibrated products that are suitable for time series analyses. With the implementation of the collection management, no major updates will be made to calibration of the Landsat sensors within a collection. Only calibration parameters needed to maintain the established calibration trends without an effect on derived environmental records will be regularly updated, while all other changes will be deferred to a new collection. This first collection, Collection 1, incorporates various radiometric calibration updates to all Landsat sensors including absolute and relative gains for Landsat 8 Operational Land Imager (OLI), stray light correction for Landsat 8 Thermal Infrared Sensor (TIRS), absolute gains for Landsat 4 and 5 Thematic Mappers (TM), recalibration of Landsat 1-5 Multispectral Scanners (MSS) to ensure radiometric consistency among different formats of archived MSS data, and a transfer of Landsat 8 OLI reflectance based calibration to all previous Landsat sensors. While all OLI/TIRS, ETM+ and majority of TM data have already been reprocessed to Collection 1, a completion of MSS and remaining TM data reprocessing is expected by the end of this year. It is important to note that, although still available for download from the USGS web pages, the products generated using the Pre-Collection processing do not benefit from the latest radiometric calibration updates. In this paper, we are assessing radiometry of solar reflective bands in Landsat Collection 1 products through analysis of trends in on-board calibrator and pseudo invariant site (PICS) responses.

Radiometric characterization of Landsat Collection 1 products

NASA Astrophysics Data System (ADS)

Micijevic, Esad; Haque, Md. Obaidul; Mishra, Nischal

2017-09-01

Landsat data in the U.S. Geological Survey (USGS) archive are being reprocessed to generate a tiered collection of consistently geolocated and radiometrically calibrated products that are suitable for time series analyses. With the implementation of the collection management, no major updates will be made to calibration of the Landsat sensors within a collection. Only calibration parameters needed to maintain the established calibration trends without an effect on derived environmental records will be regularly updated, while all other changes will be deferred to a new collection. This first collection, Collection 1, incorporates various radiometric calibration updates to all Landsat sensors including absolute and relative gains for Landsat 8 Operational Land Imager (OLI), stray light correction for Landsat 8 Thermal Infrared Sensor (TIRS), absolute gains for Landsat 4 and 5 Thematic Mappers (TM), recalibration of Landsat 1-5 Multispectral Scanners (MSS) to ensure radiometric consistency among different formats of archived MSS data, and a transfer of Landsat 8 OLI reflectance based calibration to all previous Landsat sensors. While all OLI/TIRS, ETM+ and majority of TM data have already been reprocessed to Collection 1, a completion of MSS and remaining TM data reprocessing is expected by the end of this year. It is important to note that, although still available for download from the USGS web pages, the products generated using the Pre-Collection processing do not benefit from the latest radiometric calibration updates. In this paper, we are assessing radiometry of solar reflective bands in Landsat Collection 1 products through analysis of trends in on-board calibrator and pseudo invariant site (PICS) responses.

Association of time in blood glucose range with outcomes following cardiac surgery.

PubMed

Omar, Amr S; Salama, Ahmed; Allam, Mahmoud; Elgohary, Yasser; Mohammed, Shaban; Tuli, Alejandro Kohn; Singh, Rajvir

2015-01-01

The importance of optimal postoperative glycemic control in cardiac patients remains unclear. Various glycemic targets have been prescribed to reduce wound infection and overall mortality rates. To assess glucose control, as determined by time in range (TIR), in patients with glycemic targets of 6.0 to 8.1 mmol/L, and to determine factors related to poor control. This prospective descriptive study evaluated 227 consecutive patients, 100 with and 127 without diabetes, after cardiac surgery. Patients received insulin to target glucose concentrations of 6.0 to 8.1 mmol/L. Data analyzed included patient age, gender, race, Euro score, cardiopulmonary bypass time (CPB), aortic cross clamp time (ACC), length of ventilation, stay in the intensive care unit (ICU) and stay in the hospital. Patients were divided into two groups, those who maintained > 80% and < 80% TIR. Outcome variables were compared in diabetics and non-diabetics. Patients with >80% and <80% TIR were matched in age, sex, gender, and Euro score. Failure to maintain target glycemia was significantly more frequent in diabetics (p = 0.001), in patients with glycated hemoglobin (HbA1c) > 8% (p = 0.0001), and in patients taking dopamine (p = 0.04) and adrenaline (p = 0.05). Times of CPB and ACC, length of stay in the ICU and ventilation were significantly higher in patients with TIR <80% than >80%. Rates of hypoglycemia, acute kidney injury, and in-hospital mortality were similar in the two groups, although the incidence of wound infection was higher in patients with TIR <80%. Both diabetics and non-diabetics with low TIR had poorer outcomes, as shown by length of stay and POAF. No significant differences were found between the two ethnic groups (Arabs and Asians). Patients with >80% TIR, whether or not diabetics, had better outcomes than those with <80% TIR, as determined by wound infection, lengths of ventilation and ICU stay. Additionally, they were not subject to frequent hypoglycemic events. Preoperatively high HbA1C is likely a good predictor of poor glycemic control.

Development of detailed design concepts for the EarthCARE multi-spectral imager

NASA Astrophysics Data System (ADS)

Lobb, Dan; Escadero, Isabel; Chang, Mark; Gode, Sophie

2017-11-01

The EarthCARE mission is dedicated to the study of clouds by observations from a satellite in low Earth orbit. The payload will include major radar and LIDAR instruments, supported by a multi-spectral imager (MSI) and a broadband radiometer. The paper describes development of detailed design concepts for the MSI, and analysis of critical performance parameters. The MSI will form Earth images at 500m ground sample distance (GSD) over a swath width of 150km, from a nominal platform altitude of around 400km. The task of the MSI is to provide spatial context for the single-point measurements made by the radar and LIDAR systems; it will image Earth in 7 spectral bands: one visible, one near-IR, two short-wave IR and three thermal IR. The MSI instrument will be formed in two parts: a visible-NIR-SWIR (VNS) system, radiometrically calibrated using a sunilluminated diffuser, and a thermal IR (TIR) system calibrated using cold space and an internal black-body. The VNS system will perform push-broom imaging, using linear array detectors (silicon and InGaAs) and 4 separate lenses. The TIR system will use a microbolometer array detector in a time delay and integration (TDI) mode. Critical issues discussed for the VNS system include detector selection and detailed optical design trade-offs. The latter are related to the desirability of dichroics to achieve a common aperture, which influences the calibration hardware and lens design. The TIR system's most significant problems relate to control of random noise and bias errors, requiring optimisation of detector operation and calibration procedures.

Thermal Infrared Remote Sensing for Analysis of Landscape Ecological Processes: Current Insights and Trends. Chapter 3

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Luvall, Jeffrey C.

2014-01-01

NASA or NOAA Earth-observing satellites are not the only space-based TIR platforms. The European Space Agency (ESA), the Chinese, and other countries have in orbit or plan to launch TIR remote sensing systems. Satellite remote sensing provides an excellent opportunity to study land-atmosphere energy exchanges at the regional scale. A predominant application of TIR data has been in inferring evaporation, evapotranspiration (ET), and soil moisture. In addition to using TIR data for ET and soil moisture analysis over vegetated surfaces, there is also a need for using these data for assessment of drought conditions. The concept of ecological thermodynamics provides a quantification of surface energy fluxes for landscape characterization in relation to the overall amount of energy input and output from specific land cover types.

Using airborne thermal infrared imagery and helicopter EM conductivity to locate mine pools and discharges in the Kettle Creek watershed, north-central Pennsylvania

DOE Office of Scientific and Technical Information (OSTI.GOV)

Love, E.; Hammack, R.W.; Harbert, W.P.

2005-11-01

The Kettle Creek watershed contains 50–100-year-old surface and underground coal mines that are a continuing source of acid mine drainage (AMD). To characterize the mining-altered hydrology of this watershed, an airborne reconnaissance was conducted in 2002 using airborne thermal infrared imagery (TIR) and helicopter-mounted electromagnetic (HEM) surveys. TIR uses the temperature differential between surface water and groundwater to locate areas where groundwater emerges at the surface. TIR anomalies located in the survey included seeps and springs, as well as mine discharges. In a follow-up ground investigation, hand-held GPS units were used to locate 103 of the TIR anomalies. Of themore » sites investigated, 26 correlated with known mine discharges, whereas 27 were previously unknown. Seven known mine discharges previously obscured from TIR imagery were documented. HEM surveys were used to delineate the groundwater table and also to locate mine pools, mine discharges, and groundwater recharge zones. These surveys located 12 source regions and flow paths for acidic, metal-containing (conductive) mine drainage; areas containing acid-generating mine spoil; and areas of groundwater recharge and discharge, as well as identifying potential mine discharges previously obscured from TIR imagery by nondeciduous vegetation. Follow-up ground-based electromagnetic surveys verified the results of the HEM survey. Our study suggests that airborne reconnaissance can make the remediation of large watersheds more efficient by focusing expensive ground surveys on small target areas.« less

Using airborne thermal infrared imagery and helicopter EM conductivity to locate mine pools and discharges in the Kettle Creek watershed, north-central Pennsylvania

DOE Office of Scientific and Technical Information (OSTI.GOV)

Love, E.; Hammack, R.; Harbert, W.

2005-12-01

The Kettle Creek watershed contains 50-100-year-old surface and underground coal mines that are a continuing source of acid mine drainage (AMD). To characterize the mining-altered hydrology of this watershed, an airborne reconnaissance was conducted in 2002 using airborne thermal infrared imagery (TIR) and helicopter-mounted electromagnetic (HEM) surveys. TIR uses the temperature differential between surface water and groundwater to locate areas where groundwater emerges at the surface. TIR anomalies located in the survey included seeps and springs, as well as mine discharges. In a follow-up ground investigation, hand-held GPS units were used to locate 103 of the TIR anomalies. Of themore » sites investigated, 26 correlated with known mine discharges, whereas 27 were previously unknown. Seven known mine discharges previously obscured from TIR imagery were documented. HEM surveys were used to delineate the groundwater table and also to locate mine pools, mine discharges, and groundwater recharge zones. These surveys located 12 source regions and flow paths for acidic, metal-containing (conductive) mine drainage; areas containing acid-generating mine spoil; and areas of groundwater recharge and discharge, as well as identifying potential mine discharges previously obscured from TIR imagery by nondeciduous vegetation. Follow-up ground-based electromagnetic surveys verified the results of the HEM survey. Our study suggests that airborne reconnaissance can make the remediation of large watersheds more efficient by focusing expensive ground surveys on small target areas.« less

Multimodal Broadband Vibrational Sum Frequency Generation (MM-BB-V-SFG) Spectrometer and Microscope.

PubMed

Lee, Christopher M; Kafle, Kabindra; Huang, Shixin; Kim, Seong H

2016-01-14

A broadband sum frequency generation (BB-SFG) spectrometer with multimodal (MM) capabilities was constructed, which could be routinely reconfigured for tabletop experiments in reflection, transmission, and total internal reflection (TIR) geometries, as well as microscopic imaging. The system was constructed using a Ti:sapphire amplifier (800 nm, pulse width = 85 fs, repetition rate = 2 kHz), an optical parameter amplification (OPA) system for production of broadband IR pulses tunable between 1000 and 4000 cm(-1), and two Fabry-Pérot etalons arranged in series for production of narrowband 800 nm pulses. The key feature allowing the MM operation was the nearly collinear alignment of the visible (fixed, 800 nm) and infrared (tunable, 1000-4000 cm(-1)) pulses which were spatially separated. Physical insights discussed in this paper include the comparison of spectral bandwidth produced with 40 and 85 fs pump beams, the improvement of spectral resolution using etalons, the SFG probe volume in bulk analysis, the normalization of SFG signals, the stitching of multiple spectral segments, and the operation in different modes for air/liquid and adsorbate/solid interfaces, bulk samples, as well as spectral imaging combined with principle component analysis (PCA). The SFG spectral features obtained with the MM-BB-SFG system were compared with those obtained with picosecond-scanning-SFG system and high-resolution BB-SFG system (HR-BB-SFG) for dimethyl sulfoxide, α-pinene, and various samples containing cellulose (purified commercial products, Cladophora cell wall, cotton and flax fibers, and onion epidermis cell wall).

Use of thermal infrared remote sensing data for fisheries, environmental monitoring, oil and gas exploration, and ship routing.

NASA Astrophysics Data System (ADS)

Roffer, M. A.; Gawlikowski, G.; Muller-Karger, F.; Schaudt, K.; Upton, M.; Wall, C.; Westhaver, D.

2006-12-01

Thermal infrared (TIR) and ocean color remote sensing data (1.1 - 4.0 km) are being used as the primary data source in decision making systems for fisheries management, commercial and recreational fishing advisory services, fisheries research, environmental monitoring, oil and gas operations, and ship routing. Experience over the last 30 years suggests that while ocean color and other remote sensing data (e.g. altimetry) are important data sources, TIR presently yields the most useful data for studying ocean surface circulation synoptically on a daily basis. This is due primarily to the greater temporal resolution, but also due to one's better understanding of the dynamics of sea surface temperature compared with variations in ocean color and the spatial limitations of altimeter data. Information derived from commercial operations and research is being used to improve the operational efficiency of fishing vessels (e.g. reduce search time and increase catch rate) and to improve our understanding of the variations in catch distribution and rate needed to properly manage fisheries. This information is also being used by the oil and gas industry to minimize transit time and thus, save costs (e.g., tug charter, insurance), to increase production and revenue up to 500K dollars a day. The data are also be used to reduce the risk of equipment loss, loss of time and revenue to sudden and unexpected currents such as eddies. Sequential image analysis integrating TIR and ocean color provided near-real time, synoptic visualization of the rapid and wide dispersal of coastal waters from the northern Gulf of Mexico following Hurricanes Katrina and Rita in September 2005. The satellite data and analysis techniques have also been used to monitor the effects and movement of other potential environmentally damaging substances, such as dispersing nutrient enriched waste water offshore. A review of our experience in several commercial applications and research efforts will reinforce the importance and benefits of TIR compared to other remote sensing data. Examples of sequential image analysis and side by side image comparisons will demonstrate the utility of TIR for oceanographic applications. This will emphasize that TIR research and development be continued, as well as, implemented on all new research sensor packages. Sea surface temperature, derived from TIR, has the longest history and reliability for synoptic observations of ocean circulation. Thus, any new sensor packages should be fitted with TIR at the same temporal and spatial resolution to facilitate an objective comparison of the utility of the new sensors compared with the TIR.

Refractive Index Sensing with D-Shaped Plastic Optical Fibers for Chemical and Biochemical Applications

PubMed Central

Sequeira, Filipa; Duarte, Daniel; Bilro, Lúcia; Rudnitskaya, Alisa; Pesavento, Maria; Zeni, Luigi; Cennamo, Nunzio

2016-01-01

We report the optimization of the length of a D-shaped plastic optical fiber (POF) sensor for refractive index (RI) sensing from a numerical and experimental point of view. The sensing principle is based on total internal reflection (TIR). POFs with 1 mm in diameter were embedded in grooves, realized in planar supports with different lengths, and polished to remove the cladding and part of the core. All D-shaped POF sensors were tested using aqueous medium with different refractive indices (from 1.332 to 1.471) through intensity-based configuration. Results showed two different responses. Considering the refractive index (RI) range (1.33–1.39), the sensitivity and the resolution of the sensor were strongly dependent on the sensing region length. The highest sensitivity (resolution of 6.48 × 10−3 refractive index units, RIU) was obtained with 6 cm sensing length. In the RI range (1.41–1.47), the length of the sensing region was not a critical aspect to obtain the best resolution. These results enable the application of this optical platform for chemical and biochemical evanescent field sensing. The sensor production procedure is very simple, fast, and low-cost. PMID:27983608

Refractive Index Sensing with D-Shaped Plastic Optical Fibers for Chemical and Biochemical Applications.

PubMed

Sequeira, Filipa; Duarte, Daniel; Bilro, Lúcia; Rudnitskaya, Alisa; Pesavento, Maria; Zeni, Luigi; Cennamo, Nunzio

2016-12-13

We report the optimization of the length of a D-shaped plastic optical fiber (POF) sensor for refractive index (RI) sensing from a numerical and experimental point of view. The sensing principle is based on total internal reflection (TIR). POFs with 1 mm in diameter were embedded in grooves, realized in planar supports with different lengths, and polished to remove the cladding and part of the core. All D-shaped POF sensors were tested using aqueous medium with different refractive indices (from 1.332 to 1.471) through intensity-based configuration. Results showed two different responses. Considering the refractive index (RI) range (1.33-1.39), the sensitivity and the resolution of the sensor were strongly dependent on the sensing region length. The highest sensitivity (resolution of 6.48 × 10 -3 refractive index units, RIU) was obtained with 6 cm sensing length. In the RI range (1.41-1.47), the length of the sensing region was not a critical aspect to obtain the best resolution. These results enable the application of this optical platform for chemical and biochemical evanescent field sensing. The sensor production procedure is very simple, fast, and low-cost.

An optimized surface plasmon photovoltaic structure using energy transfer between discrete nano-particles.

PubMed

Lin, Albert; Fu, Sze-Ming; Chung, Yen-Kai; Lai, Shih-Yun; Tseng, Chi-Wei

2013-01-14

Surface plasmon enhancement has been proposed as a way to achieve higher absorption for thin-film photovoltaics, where surface plasmon polariton(SPP) and localized surface plasmon (LSP) are shown to provide dense near field and far field light scattering. Here it is shown that controlled far-field light scattering can be achieved using successive coupling between surface plasmonic (SP) nano-particles. Through genetic algorithm (GA) optimization, energy transfer between discrete nano-particles (ETDNP) is identified, which enhances solar cell efficiency. The optimized energy transfer structure acts like lumped-element transmission line and can properly alter the direction of photon flow. Increased in-plane component of wavevector is thus achieved and photon path length is extended. In addition, Wood-Rayleigh anomaly, at which transmission minimum occurs, is avoided through GA optimization. Optimized energy transfer structure provides 46.95% improvement over baseline planar cell. It achieves larger angular scattering capability compared to conventional surface plasmon polariton back reflector structure and index-guided structure due to SP energy transfer through mode coupling. Via SP mediated energy transfer, an alternative way to control the light flow inside thin-film is proposed, which can be more efficient than conventional index-guided mode using total internal reflection (TIR).

Transient infrared spectroscopy for detection of toxigenic fungi in corn: potential for on-line evaluation.

PubMed

Gordon, S H; Jones, R W; McClelland, J F; Wicklow, D T; Greene, R V

1999-12-01

An urgent need for rapid sensors to detect contamination of food grains by toxigenic fungi such as Aspergillus flavus prompted research and development of Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS) as a highly sensitive probe for fungi growing on the surfaces of individual corn kernels. However, the photoacoustic technique has limited potential for screening bulk corn because currently available photoacoustic detectors can accommodate only a single intact kernel at a time. Transient infrared spectroscopy (TIRS), on the other hand, is a promising new technique that can acquire analytically useful infrared spectra from a moving mass of solid materials. Therefore, the potential of TIRS for on-line, noncontact detection of A. flavus contamination in a moving bed of corn kernels was explored. Early test results based on visual inspection of TIRS spectral differences predict an 85% or 95% success rate in distinguishing healthy corn from grain infected with A. flavus. Four unique infrared spectral features which identified infected corn in FTIR-PAS were also found to be diagnostic in TIRS. Although the technology is still in its infancy, the preliminary results indicate that TIRS is a potentially effective screening method for bulk quantities of corn grain.

Shipment of the TIRS instrument

NASA Image and Video Library

2017-12-08

The TIRS instrument in the foreground with its shipping container waits in the background. The copper-color of TIRS is due to the gold-colored foil that coats the Multi-Layer Insulation blankets. The Thermal Infrared Sensor (TIRS) will fly on the next Landsat satellite, the Landsat Data Continuity Mission (LDCM). TIRS was built on an accelerated schedule at NASA's Goddard Space Flight Center, Greenbelt, Md. and will now be integrated into the LDCM spacecraft at Orbital Science Corp. in Gilbert, Ariz. The Landsat Program is a series of Earth observing satellite missions jointly managed by NASA and the U.S. Geological Survey. Landsat satellites have been consistently gathering data about our planet since 1972. They continue to improve and expand this unparalleled record of Earth's changing landscapes for the benefit of all. For more information on Landsat, visit: www.nasa.gov/landsat Credit: NASA/GSFC/Rebecca Roth NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Administrative Management of Small Group Physician Practice.

DTIC Science & Technology

1982-12-01

wound around the right side in an S -shape for about 35 feet. A 87 solarium allowed children to play outside while in the waiting room. An enormous...four physicians. It reflects the findings of a questionnaire survey about the operation of their private offices. Such areas as conflict resolution...may be useful in comparing the 00 1 P’j 1473 EolyIOm Ov Iu~ 0O " Is 6OL972 S /N0I0014501I SCumrIT CLAMSICATIO6 OP TIr" s PACE IR CSYW i m -omI m~uo -ov r

Overexpression of plum auxin receptor PslTIR1 in tomato alters plant growth, fruit development and fruit shelf-life characteristics.

PubMed

El-Sharkawy, I; Sherif, S; El Kayal, W; Jones, B; Li, Z; Sullivan, A J; Jayasankar, Subramanian

2016-02-29

TIR1-like proteins are F-box auxin receptors. Auxin binding to the F-box receptor proteins promotes the formation of SCF(TIR1) ubiquitin ligase complex that targets the auxin repressors, Aux/IAAs, for degradation via the ubiquitin/26S proteasome pathway. The release of auxin response factors (ARFs) from their Aux/IAA partners allows ARFs to mediate auxin-responsive changes in downstream gene transcription. In an attempt to understand the potential role of auxin during fruit development, a plum auxin receptor, PslTIR1, has previously been characterized at the cellular, biochemical and molecular levels, but the biological significance of this protein is still lacking. In the present study, tomato (Solanum lycopersicum) was used as a model to investigate the phenotypic and molecular changes associated with the overexpression of PslTIR1. The findings of the present study highlighted the critical role of PslTIR1 as positive regulator of auxin-signalling in coordinating the development of leaves and fruits. This was manifested by the entire leaf morphology of transgenic tomato plants compared to the wild-type compound leaf patterning. Moreover, transgenic plants produced parthenocarpic fruits, a characteristic property of auxin hypersensitivity. The autocatalytic ethylene production associated with the ripening of climacteric fruits was not significantly altered in transgenic tomato fruits. Nevertheless, the fruit shelf-life characteristics were affected by transgene presence, mainly through enhancing fruit softening rate. The short shelf-life of transgenic tomatoes was associated with dramatic upregulation of several genes encoding proteins involved in cell-wall degradation, which determine fruit softening and subsequent fruit shelf-life. The present study sheds light into the involvement of PslTIR1 in regulating leaf morphology, fruit development and fruit softening-associated ripening, but not autocatalytic ethylene production. The results demonstrate that auxin accelerates fruit softening independently of ethylene action and this is probably mediated through the upregulation of many cell-wall metabolism genes.

SpecTIR and SEBASS analysis of the National Mining District, Humboldt County, Nevada

NASA Astrophysics Data System (ADS)

Morken, Todd O.

The purpose of this study was to evaluate the minerals and materials that could be uniquely identified and mapped from measurements made with airborne hyperspectral SpecTIR VNIR/SWIR and SEBASS TIR sensors over areas in the National Mining District. SpecTIR Corporation and Aerospace Corporation acquired Hyperspectral measurements on June 26, 2008 using their ProSpecTIR and SEBASS sensors respectively. In addition the effects of vegetation, elevation, the atmosphere on spectral measurements were evaluated to determine their impact upon the data analysis and target identification. The National Mining District is located approximately 75 miles northeast of Winnemucca, Nevada at the northern end of the Santa Rosa Mountains. Precious metal mining has been dormant in this area since the 1940's, however with increased metal prices over the last decade economic interest in the region has increased substantially. Buckskin Mountain has a preserved alteration assemblage that is exposed in topographically steep terrain, ideal for exploring what hydrothermal alteration products can be identified and mapped in these datasets. These Visible Near Infrared (VNIR), Short Wave Infrared (SWIR), and Long Wave Infrared (LWIR) hyperspectral datasets were used to identify and map kaolinite, alunite, quartz, opal, and illite/muscovite, all of which are useful exploration target identifiers and can indicate regions of alteration. These mapping results were then combined with and compared to other geospatial data in a geographic information systems (GIS) database. The TIR hyperspectral data provided significant additional information that can benefit geologic exploration and demonstrated its usefulness as an additional tool for geological exploration.

Remote thermal infrared imaging as an identifier for groundwater dependent ecosystems of esker aquifers in Northern boreal region

NASA Astrophysics Data System (ADS)

Rossi, Pekka M.; Korkka-Niemi, Kirsti; Rautio, Anne; Jyväsjärvi, Jussi; Isokangas, Elina; Jaros, Anna; Kløve, Bjørn

2017-04-01

Remote thermal infrared imaging (TIR) is a rapid and feasible method to map groundwater seepages in different surroundings. As the thermal cameras are more available, TIR could be more used as a mapping and management tool for groundwater dependent ecosystems (GDEs). This study demonstrates how TIR was used in a boreal esker aquifer where springs, peatlands, lakes and stream ecosystems are present. Two esker aquifer areas in Finland were mapped with a two-day helicopter based thermal imaging campaign. Imaging included 67 lakes, a bog mire, three headwater streams and a peatland forestry area with ditches. The results of the TIR indicated that many of the lakes had shore seepage points or longer shoreline seepage areas of groundwater. When compared to a previous groundwater dependence study with stable water isotopes of the same lakes, a one-way analysis of covariate (ANCOVA) indicated a correlation between the groundwater dependence and the seepages of a selected lake. The studied mire bog had unmapped springs 0.5 - 1 km beyond the current groundwater protection area of the esker. Also the temperature of the headwater streams referred to a groundwater connection beyond protection limits. The forestry ditches of the discharge zone had a complex temperature pattern due to groundwater seepage. With carefully planned imaging route the TIR resulted to be highly informative and an efficient method to study different GDEs on varying surroundings. The study results emphasize the use of TIR as a standard tool in GDE management planning of boreal eskers comparable to the vegetation based mapping.

Cloud Tolerance of Remote-Sensing Technologies to Measure Land Surface Temperature

NASA Technical Reports Server (NTRS)

Holmes, Thomas R. H.; Hain, Christopher R.; Anderson, Martha C.; Crow, Wade T.

2016-01-01

Conventional methods to estimate land surface temperature (LST) from space rely on the thermal infrared(TIR) spectral window and is limited to cloud-free scenes. To also provide LST estimates during periods with clouds, a new method was developed to estimate LST based on passive microwave(MW) observations. The MW-LST product is informed by six polar-orbiting satellites to create a global record with up to eight observations per day for each 0.25resolution grid box. For days with sufficient observations, a continuous diurnal temperature cycle (DTC) was fitted. The main characteristics of the DTC were scaled to match those of a geostationary TIR-LST product. This paper tests the cloud tolerance of the MW-LST product. In particular, we demonstrate its stable performance with respect to flux tower observation sites (four in Europe and nine in the United States), over a range of cloudiness conditions up to heavily overcast skies. The results show that TIR based LST has slightly better performance than MW-LST for clear-sky observations but suffers an increasing negative bias as cloud cover increases. This negative bias is caused by incomplete masking of cloud-covered areas within the TIR scene that affects many applications of TIR-LST. In contrast, for MW-LST we find no direct impact of clouds on its accuracy and bias. MW-LST can therefore be used to improve TIR cloud screening. Moreover, the ability to provide LST estimates for cloud-covered surfaces can help expand current clear-sky-only satellite retrieval products to all-weather applications.

Ten years of ASTER thermal infrared data from Terra: Discoveries, lessons learned, and insights into future missions

NASA Astrophysics Data System (ADS)

Ramsey, M. S.; Dehn, J.; Duda, K.; Hughes, C. G.; Lee, R.; Rose, S.; Scheidt, S. P.; Wessels, R. L.

2009-12-01

Soon after its launch in December 1999, the ASTER sensor on the NASA Terra satellite began acquiring infrared data of dynamic surface processes around the world. For the first time in history, well calibrated, relatively high spatial resolution thermal infrared (TIR) data was being collected in more than two spectral bands. These data began a new era in Earth science from space allowing us to examine such diverse topics as the compositional mapping of eolian systems, the accurate detection of subpixel thermal heterogeneities, the relationship between emitted energy from glassy materials and the volcanic processes that formed them, and the thermophysical behavior of the land surface. The TIR subsystem of ASTER has maintained very good radiometric accuracy over the last decade, which is double the original design life. The diligence of the ASTER Science Team to maintain this quality and expand the data through programs such as the night time TIR global map will provide a scientific dataset utilized for many years in the future. For example, one such program started in 2003 was a new collaboration between the ASTER project and the U.S. Geological Survey to help better monitor the explosive volcanoes of the northern Pacific region. The rapid response mode of the instrument has now been automated and linked to a larger-scale and more rapid monitoring alert system operated by the Alaska Volcano Observatory. ASTER TIR data collected under this project are commonly the first detailed views of new activity at these remote volcanoes, with over 1400 TIR images having been acquired for the five most active Kamchatka volcanoes. This presentation will focus on an overview of the science and operational results over the last decade using data from the ASTER TIR sensor. ASTER has the capability to acquire high spatial resolution data from the visible to the TIR wavelength region. Those data, in conjunction with its ability to generate digital elevation models (DEM’s), makes the instrument particularly useful for numerous aspects of volcanic and eolian remote sensing. The lessons learned in applying these data to a wide range of surface science questions are critically important to consider during the planning for the next generation of orbital TIR sensors such as the proposed NASA Hyperspectral Infrared Imager (HyspIRI) mission.

Effects of Weathering on TIR Spectra and Rock Classification

NASA Astrophysics Data System (ADS)

McDowell, M. L.; Hamilton, V. E.; Riley, D.

2006-03-01

Changes in mineralogy due to weathering are detectable in the TIR and cause misclassification of rock types. We survey samples over a range of lithologies and attempt to provide a method of correction for rock identification from weathered spectra.

Automatic Coregistration Algorithm to Remove Canopy Shaded Pixels in UAV-Borne Thermal Images to Improve the Estimation of Crop Water Stress Index of a Drip-Irrigated Cabernet Sauvignon Vineyard.

PubMed

Poblete, Tomas; Ortega-Farías, Samuel; Ryu, Dongryeol

2018-01-30

Water stress caused by water scarcity has a negative impact on the wine industry. Several strategies have been implemented for optimizing water application in vineyards. In this regard, midday stem water potential (SWP) and thermal infrared (TIR) imaging for crop water stress index (CWSI) have been used to assess plant water stress on a vine-by-vine basis without considering the spatial variability. Unmanned Aerial Vehicle (UAV)-borne TIR images are used to assess the canopy temperature variability within vineyards that can be related to the vine water status. Nevertheless, when aerial TIR images are captured over canopy, internal shadow canopy pixels cannot be detected, leading to mixed information that negatively impacts the relationship between CWSI and SWP. This study proposes a methodology for automatic coregistration of thermal and multispectral images (ranging between 490 and 900 nm) obtained from a UAV to remove shadow canopy pixels using a modified scale invariant feature transformation (SIFT) computer vision algorithm and Kmeans++ clustering. Our results indicate that our proposed methodology improves the relationship between CWSI and SWP when shadow canopy pixels are removed from a drip-irrigated Cabernet Sauvignon vineyard. In particular, the coefficient of determination (R²) increased from 0.64 to 0.77. In addition, values of the root mean square error (RMSE) and standard error (SE) decreased from 0.2 to 0.1 MPa and 0.24 to 0.16 MPa, respectively. Finally, this study shows that the negative effect of shadow canopy pixels was higher in those vines with water stress compared with well-watered vines.

The Need for High Spatial Resolution Multispectral Thermal Remote Sensing Data In Urban Heat Island Research

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Luvall, Jeffrey C.

2006-01-01

Although the study of the Urban Heat Island (UHI) effect dates back to the early 1800's when Luke Howard discovered London s heat island, it has only been with the advent of thermal remote sensing systems that the extent, characteristics, and impacts of the UHI have become to be understood. Analysis of the UHI effect is important because above all, this phenomenon can directly influence the health and welfare of urban residents. For example, in 1995, over 700 people died in Chicago due to heat-related causes. UHI s are characterized by increased temperature in comparison to rural areas and mortality rates during a heat wave increase exponentially with the maximum temperature, an effect that is exacerbated by the UHI. Aside from the direct impacts of the UHI on temperature, UHI s can produce secondary effects on local meteorology, including altering local wind patterns, increased development of clouds and fog, and increasing rates of precipitation either over, or downwind, of cities. Because of the extreme heterogeneity of the urban surface, in combination with the sprawl associated with urban growth, thermal infrared (TIR) remote sensing data have become of significant importance in understanding how land cover and land use characteristics affect the development and intensification of the UHI. TIR satellite data have been used extensively to analyze the surface temperature regimes of cities to help observe and measure the impacts of surface temperatures across the urban landscape. However, the spatial scales at which satellite TIR data are collected are for the most part, coarse, with the finest readily available TIR data collected by the Landsat ETM+ sensor at 60m spatial resolution. For many years, we have collected high spatial resolution (10m) data using an airborne multispectral TIR sensor over a number of cities across the United States. These high resolution data have been used to develop an understanding of how discrete surfaces across the urban environment (e.g., rooftops, pavements) interact from a surface-lower atmosphere energy flux perspective, to force the development of the UHI. Moreover, the airborne TIR sensor we used in our UHI studies was a multispectral sensor that had six channels in the 8-12pm range. The advantages of collecting multispectral TIR data became readily evident as a valuable tool for better calculation of unique surface thermal energy responses for urban materials over the 8-12 micrometer region, and also for getting a better handle on surface emissivity characteristics for these discrete surfaces. In this presentation, we will provide evidence on the virtues of how high spatial resolution multispectral TIR data can provide for better analysis of the UHI that cannot now be attained via TIR data obtained from satellites. Furthermore, we wish to provide compelling evidence on why future TIR satellite sensors should collect data at fine spatial resolutions (e.g. less than or equal to 30m) to better allow for measurement of surface thermal energy fluxes from discrete urban surfaces, and to better understand how surface fluxes from different urban materials in cities around the world in different climatic regimes, affect development of the UHI characteristics.

Dynamics of Escherichia coli Virulence Factors in Dairy Herds and Farm Environments in a Longitudinal Study in the United States

PubMed Central

Lambertini, Elisabetta; Karns, Jeffrey S.; Van Kessel, Jo Ann S.; Cao, Huilin; Schukken, Ynte H.; Wolfgang, David R.; Smith, Julia M.

2015-01-01

Pathogenic Escherichia coli or its associated virulence factors have been frequently detected in dairy cow manure, milk, and dairy farm environments. However, it is unclear what the long-term dynamics of E. coli virulence factors are and which farm compartments act as reservoirs. This study assessed the occurrence and dynamics of four E. coli virulence factors (eae, stx1, stx2, and the gamma allele of the tir gene [γ-tir]) on three U.S. dairy farms. Fecal, manure, water, feed, milk, and milk filter samples were collected from 2004 to 2012. Virulence factors were measured by postenrichment quantitative PCR (qPCR). All factors were detected in most compartments on all farms. Fecal and manure samples showed the highest prevalence, up to 53% for stx and 21% for γ-tir in fecal samples and up to 84% for stx and 44% for γ-tir in manure. Prevalence was low in milk (up to 1.9% for stx and 0.7% for γ-tir). However, 35% of milk filters were positive for stx and 20% were positive for γ-tir. All factors were detected in feed and water. Factor prevalence and levels, expressed as qPCR cycle threshold categories, fluctuated significantly over time, with no clear seasonal signal independent from year-to-year variability. Levels were correlated between fecal and manure samples, and in some cases autocorrelated, but not between manure and milk filters. Shiga toxins were nearly ubiquitous, and 10 to 18% of the lactating cows were potential shedders of E. coli O157 at least once during their time in the herds. E. coli virulence factors appear to persist in many areas of the farms and therefore contribute to transmission dynamics. PMID:25911478

Scientific evidence of three different insecticide-resistant profiles in Triatoma infestans (Hemiptera: Reduviidae) populations from Argentina and Bolivia.

PubMed

Germano, M D; Santo-Orihuela, P; Roca-Acevedo, G; Toloza, A C; Vassena, C; Picollo, M I; Mougabure-Cueto, G

2012-11-01

Triatoma infestans (Klug, 1834) (Hemiptera, Reduviidae) is the main vector of Chagas disease in the southern cone South America. Chemical control to the vectors appears to be the best option to reduce the incidence of the disease. However, since 2002, high resistance to insecticides that correlated with field control failures was detected in T. infestans from Argentina and Bolivia. In this paper, we analyzed three T. infestans populations whose pyrethroid-resistance had been recently detected, and we defined at least three resistant profiles according to the toxicological and biochemical characteristics of the studied resistant populations. The resistance profiles were identified as Ti-R1, Ti-R2, and Ti-R3, corresponding to the Argentinean Acambuco, and the Bolivians Entre Ríos and Mataral. Ti-R1 exhibited nymphs and eggs with medium resistance level to deltamethrin (RR = 32.5 and 28.6; respectively). Pyrethroid-esterases played a relevant role in deltamethrin resistance. Ti-R2 exhibited nymphs with high resistance to deltamethrin (RR = 173.8) and low resistance to fipronil (RR = 12.4). Pyrethroid-esterases were involved in resistance. Moreover, eggs showed medium resistance level to deltamethrin (RR = 39.1). Ti-R3 had nymphs with low resistance to deltamethrin (RR = 17.4), and medium resistance to fipronil (RR = 66.8). Pyrethroid-esterases showed increased activity, and eggs possessed low resistance to deltamethrin (RR = 8.4). The characterization of the resistance to pyrethroid in these T. infestans populations from Argentina and Bolivia do not permit the generalization of three forms of resistance profile. So far as we appear to know, the forms of mechanisms and their frequencies reported here are selected independently, so additional sites might well show additional combinations of resistance mechanisms and their frequencies.

Identifying Pre-Seismic TIR Anomalies: A Long Term (2004-2015) Of RST Analysis Over Turkish Area

NASA Astrophysics Data System (ADS)

Perrone, A.; Tramutoli, V.; Corrado, A.; Filizzola, C.; Genzano, N.; Lisi, M.; Paciello, R.; Pergola, N.

2017-12-01

Since eighties, fluctuations of Earth's thermally emitted radiation, measured by satellite sensors operating in the thermal infrared (TIR) spectral range (i.e. 10-12 µm), have been associated with the complex process of preparation of earthquakes. Several theories have been proposed to explain their origin and their space-time evolution. In this paper, the Earth's emitted radiation in the Thermal Infra-Red spectral region is considered for its possible correlation with M≥4 earthquakes occurred in Turkey in between 2004 and 2015. Robust Satellite Technique (RST) and RETIRA (Robust Estimator of TIR Anomalies) index were used to preliminarily define, and then to identify, Significant Sequences of TIR Anomalies (SSTAs) in the period 1 April 2004- 31 October 2015 (12 years) of daily TIR images acquired by the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on board the Meteosat Second Generation (MSG) satellite. The performed analysis shows that more than 67% of all identified SSTAs occur in the pre-fixed space-time window around the occurrence time and location of earthquakes (M≥4), with a false positive rate smaller than 33%. Moreover, Molchan error diagram analysis gave a clear indication of non-casualty of such a correlation, in comparison with the random guess function. Notwithstanding the huge amount of missed events due to frequent space/time data gaps produced by the presence of clouds over the scene the achieved results, and particularly the low rate of false positives registered on a so long testing period, seems sufficient (at least) to qualify TIR anomalies (identified by RST approach and RETIRA index) among the parameters to be considered in the framework of a multi-parametric approach to time-Dependent Assessment of Seismic Hazard (t-DASH).

Pathogen effectors target Arabidopsis EDS1 and alter its interactions with immune regulators.

PubMed

Bhattacharjee, Saikat; Halane, Morgan K; Kim, Sang Hee; Gassmann, Walter

2011-12-09

Plant resistance proteins detect the presence of specific pathogen effectors and initiate effector-triggered immunity. Few immune regulators downstream of resistance proteins have been identified, none of which are known virulence targets of effectors. We show that Arabidopsis ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1), a positive regulator of basal resistance and of effector-triggered immunity specifically mediated by Toll-interleukin-1 receptor-nucleotide binding-leucine-rich repeat (TIR-NB-LRR) resistance proteins, forms protein complexes with the TIR-NB-LRR disease resistance proteins RPS4 and RPS6 and with the negative immune regulator SRFR1 at a cytoplasmic membrane. Further, the cognate bacterial effectors AvrRps4 and HopA1 disrupt these EDS1 complexes. Tight association of EDS1 with TIR-NB-LRR-mediated immunity may therefore derive mainly from being guarded by TIR-NB-LRR proteins, and activation of this branch of effector-triggered immunity may directly connect to the basal resistance signaling pathway via EDS1.

Waveform Optimization for Target Estimation by Cognitive Radar with Multiple Antennas.

PubMed

Yao, Yu; Zhao, Junhui; Wu, Lenan

2018-05-29

A new scheme based on Kalman filtering to optimize the waveforms of an adaptive multi-antenna radar system for target impulse response (TIR) estimation is presented. This work aims to improve the performance of TIR estimation by making use of the temporal correlation between successive received signals, and minimize the mean square error (MSE) of TIR estimation. The waveform design approach is based upon constant learning from the target feature at the receiver. Under the multiple antennas scenario, a dynamic feedback loop control system is established to real-time monitor the change in the target features extracted form received signals. The transmitter adapts its transmitted waveform to suit the time-invariant environment. Finally, the simulation results show that, as compared with the waveform design method based on the MAP criterion, the proposed waveform design algorithm is able to improve the performance of TIR estimation for extended targets with multiple iterations, and has a relatively lower level of complexity.

Improving the RST Approach for Earthquake Prone Areas Monitoring: Results of Correlation Analysis among Significant Sequences of TIR Anomalies and Earthquakes (M>4) occurred in Italy during 2004-2014

NASA Astrophysics Data System (ADS)

Tramutoli, V.; Coviello, I.; Filizzola, C.; Genzano, N.; Lisi, M.; Paciello, R.; Pergola, N.

2015-12-01

Looking toward the assessment of a multi-parametric system for dynamically updating seismic hazard estimates and earthquake short term (from days to weeks) forecast, a preliminary step is to identify those parameters (chemical, physical, biological, etc.) whose anomalous variations can be, to some extent, associated to the complex process of preparation of a big earthquake. Among the different parameters, the fluctuations of Earth's thermally emitted radiation, as measured by sensors on board of satellite system operating in the Thermal Infra-Red (TIR) spectral range, have been proposed since long time as potential earthquake precursors. Since 2001, a general approach called Robust Satellite Techniques (RST) has been used to discriminate anomalous thermal signals, possibly associated to seismic activity from normal fluctuations of Earth's thermal emission related to other causes (e.g. meteorological) independent on the earthquake occurrence. Thanks to its full exportability on different satellite packages, RST has been implemented on TIR images acquired by polar (e.g. NOAA-AVHRR, EOS-MODIS) and geostationary (e.g. MSG-SEVIRI, NOAA-GOES/W, GMS-5/VISSR) satellite sensors, in order to verify the presence (or absence) of TIR anomalies in presence (absence) of earthquakes (with M>4) in different seismogenic areas around the world (e.g. Italy, Turkey, Greece, California, Taiwan, etc.).In this paper, a refined RST (Robust Satellite Techniques) data analysis approach and RETIRA (Robust Estimator of TIR Anomalies) index were used to identify Significant Sequences of TIR Anomalies (SSTAs) during eleven years (from May 2004 to December 2014) of TIR satellite records, collected over Italy by the geostationary satellite sensor MSG-SEVIRI. On the basis of specific validation rules (mainly based on physical models and results obtained by applying RST approach to several earthquakes all around the world) the level of space-time correlation among SSTAs and earthquakes (with M≥4) occurrence has been evaluated. Achieved results will be discussed, also in the framework of a multi-parametric approach to time-Dependent Assessment of Seismic Hazard (t-DASH).

Role of Tir and Intimin in the Virulence of Rabbit Enteropathogenic Escherichia coli Serotype O103:H2

PubMed Central

Marchès, Olivier; Nougayrède, Jean-Philippe; Boullier, Séverine; Mainil, Jacques; Charlier, Gérard; Raymond, Isabelle; Pohl, Pierre; Boury, Michèle; De Rycke, Jean; Milon, Alain; Oswald, Eric

2000-01-01

Attaching and effacing (A/E) rabbit enteropathogenic Escherichia coli (REPEC) strains belonging to serogroup O103 are an important cause of diarrhea in weaned rabbits. Like human EPEC strains, they possess the locus of enterocyte effacement clustering the genes involved in the formation of the A/E lesions. In addition, pathogenic REPEC O103 strains produce an Esp-dependent but Eae (intimin)-independent alteration of the host cell cytoskeleton characterized by the formation of focal adhesion complexes and the reorganization of the actin cytoskeleton into bundles of stress fibers. To investigate the role of intimin and its translocated coreceptor (Tir) in the pathogenicity of REPEC, we have used a newly constructed isogenic tir null mutant together with a previously described eae null mutant. When human HeLa epithelial cells were infected, the tir mutant was still able to induce the formation of stress fibers as previously reported for the eae null mutant. When the rabbit epithelial cell line RK13 was used, REPEC O103 produced a classical fluorescent actin staining (FAS) effect, whereas both the eae and tir mutants were FAS negative. In a rabbit ligated ileal loop model, neither mutant was able to induce A/E lesions. In contrast to the parental strain, which intimately adhered to the enterocytes and destroyed the brush border microvilli, bacteria of both mutants were clustered in the mucus without reaching and damaging the microvilli. The role of intimin and Tir was then analyzed in vivo by oral inoculation of weaned rabbits. Although both mutants were still present in the intestinal flora of the rabbits 3 weeks after oral inoculation, neither mutant strain induced any clinical signs or significant weight loss in the inoculated rabbits whereas the parental strain caused the death of 90% of the inoculated rabbits. Nevertheless, an inflammatory infiltrate was present in the lamina propria of the rabbits infected with both mutants, with an inflammatory response greater for the eae null mutant. In conclusion, we have confirmed the role of intimin in virulence, and we have shown, for the first time, that Tir is also a key factor in vivo for pathogenicity. PMID:10722617

Role of tir and intimin in the virulence of rabbit enteropathogenic Escherichia coli serotype O103:H2.

PubMed

Marchès, O; Nougayrède, J P; Boullier, S; Mainil, J; Charlier, G; Raymond, I; Pohl, P; Boury, M; De Rycke, J; Milon, A; Oswald, E

2000-04-01

Attaching and effacing (A/E) rabbit enteropathogenic Escherichia coli (REPEC) strains belonging to serogroup O103 are an important cause of diarrhea in weaned rabbits. Like human EPEC strains, they possess the locus of enterocyte effacement clustering the genes involved in the formation of the A/E lesions. In addition, pathogenic REPEC O103 strains produce an Esp-dependent but Eae (intimin)-independent alteration of the host cell cytoskeleton characterized by the formation of focal adhesion complexes and the reorganization of the actin cytoskeleton into bundles of stress fibers. To investigate the role of intimin and its translocated coreceptor (Tir) in the pathogenicity of REPEC, we have used a newly constructed isogenic tir null mutant together with a previously described eae null mutant. When human HeLa epithelial cells were infected, the tir mutant was still able to induce the formation of stress fibers as previously reported for the eae null mutant. When the rabbit epithelial cell line RK13 was used, REPEC O103 produced a classical fluorescent actin staining (FAS) effect, whereas both the eae and tir mutants were FAS negative. In a rabbit ligated ileal loop model, neither mutant was able to induce A/E lesions. In contrast to the parental strain, which intimately adhered to the enterocytes and destroyed the brush border microvilli, bacteria of both mutants were clustered in the mucus without reaching and damaging the microvilli. The role of intimin and Tir was then analyzed in vivo by oral inoculation of weaned rabbits. Although both mutants were still present in the intestinal flora of the rabbits 3 weeks after oral inoculation, neither mutant strain induced any clinical signs or significant weight loss in the inoculated rabbits whereas the parental strain caused the death of 90% of the inoculated rabbits. Nevertheless, an inflammatory infiltrate was present in the lamina propria of the rabbits infected with both mutants, with an inflammatory response greater for the eae null mutant. In conclusion, we have confirmed the role of intimin in virulence, and we have shown, for the first time, that Tir is also a key factor in vivo for pathogenicity.

Use of ASTER and MODIS thermal infrared data to quantify heat flow and hydrothermal change at Yellowstone National Park

USGS Publications Warehouse

Vaughan, R. Greg; Keszthelyi, Laszlo P.; Lowenstern, Jacob B.; Jaworowski, Cheryl; Heasler, Henry

2012-01-01

The overarching aim of this study was to use satellite thermal infrared (TIR) remote sensing to monitor geothermal activity within the Yellowstone geothermal area to meet the missions of both the U.S. Geological Survey and the Yellowstone National Park Geology Program. Specific goals were to: 1) address the challenges of monitoring the surface thermal characteristics of the > 10,000 spatially and temporally dynamic thermal features in the Park (including hot springs, pools, geysers, fumaroles, and mud pots) that are spread out over ~ 5000 km2, by using satellite TIR remote sensing tools (e.g., ASTER and MODIS), 2) to estimate the radiant geothermal heat flux (GHF) for Yellowstone's thermal areas, and 3) to identify normal, background thermal changes so that significant, abnormal changes can be recognized, should they ever occur (e.g., changes related to tectonic, hydrothermal, impending volcanic processes, or human activities, such as nearby geothermal development). ASTER TIR data (90-m pixels) were used to estimate the radiant GHF from all of Yellowstone's thermal features and update maps of thermal areas. MODIS TIR data (1-km pixels) were used to record background thermal radiance variations from March 2000 through December 2010 and establish thermal change detection limits. A lower limit for the radiant GHF estimated from ASTER TIR temperature data was established at ~ 2.0 GW, which is ~ 30–45% of the heat flux estimated through geochemical thermometry. Also, about 5 km2 of thermal areas was added to the geodatabase of mapped thermal areas. A decade-long time-series of MODIS TIR radiance data was dominated by seasonal cycles. A background subtraction technique was used in an attempt to isolate variations due to geothermal changes. Several statistically significant perturbations were noted in the time-series from Norris Geyser Basin, however many of these did not correspond to documented thermal disturbances. This study provides concrete examples of the strengths and limitations of current satellite TIR monitoring of geothermal areas, highlighting some specific areas that can be improved. This work provides a framework for future satellite-based thermal monitoring at Yellowstone and other volcanic and geothermal systems

Sensitivity of spectral climate signals to the emissions of atmospheric dust

NASA Astrophysics Data System (ADS)

Xu, X.; Wang, J.; Wang, Y.; Henze, D. K.; Zhang, L.

2015-12-01

Mineral dust particles profoundly influence the Earth climate due to their varied affects on the radiation and cloud physics. The knowledge of dust emissions from daily to seasonal scales is thus important for interpreting the past and predicting the future climate changes. Satellite measured radiances in the shortwave and thermal infrared are sensitive to the amount and properties of mineral dust present in the atmosphere. Therefore, the climate (i.e., monthly averages) of these reflectance spectra could contain valuable information on the change of dust emissions. In this work, we investigate the feasibility of using the climate of spectral radiances for recovering dust emissions. An observation simulation system (OSS) that incorporates the Unified Linearized Vector Radiative Transfer Model (UNL-VRTM) with forward and adjoint global chemistry transport models (GEOS-Chem and FIM-Chem) has been applied to generate synthetic hyperspectral climate data in the shortwave and thermal infrared (TIR) for summer 2008. Along with the calculation of radiances at the top of the atmosphere (TOA), the OSS also computes their Jacobians of these synthetic data to dust optical depth, plume height, and effective radius, as well as the adjoint gradients of spectral radiances to dust emissions. We found that the brightness temperature (BT) in the TIR spectra at TOA is sensitive to both of the dust plume height and particle size. For the same relative changes of these parameters, BT shows largest change with respect to particle size at the wavenumber of 890-1200 cm-1. This demonstrates the potential for retrieving three-dimensional dust information along with the particle size from hyperspectral TIR measurements. We also assess the information content of monthly versus instantaneous radiances for constraining dust emissionsthe from the calculated adjoint gradients. Our analysis may guide new applications of long-term spectral radiance measurements (such as those from GOME, AIRS, IASI, and CrIS instruments) to constrain dust sources, and thus reduce uncertainty in our broader understanding of the impacts of mineral dust on climate.

Adsorption of benzyldimethylhexadecylammonium chloride at the hydrophobic silica-water interface studied by total internal reflection Raman spectroscopy: effects of silica surface properties and metal salt addition.

PubMed

Grenoble, Zlata; Baldelli, Steven

2013-08-29

The adsorption of the cationic surfactant benzyldimethylhexadecylammonium (BDMHA(+)) chloride was studied at an octadecyltrichlorosilane (OTS)-monolayer-modified silica-water interface by Raman spectroscopy in total internal reflection (TIR) geometry. The present study demonstrates the capabilities of this spectroscopic technique to evaluate thermodynamic and kinetic BDMHA(+)Cl(-) adsorption properties at the hydrophobic silica surface. The surface coverage of BDMHA(+) decreased by 50% at the hydrophobic OTS-silica surface relative to the surface coverage on bare silica; the dominating driving mechanisms for surfactant adsorption were identified as hydrophobic effects and head group charge screening by the electrolyte counterions. Addition of magnesium metal salt (MgCl2) to the aqueous solution (∼ neutral pH) lowered the surface coverage and moderately increased the Langmuir adsorption constants relative to those of the pure surfactant. These trends were previously observed at the hydrophilic, negatively charged silica surface but with a smaller change in the Gibbs free energy of adsorption at the hydrophobic silica surface. The hydrophobic OTS-silica surface properties resulted in shorter times for the surfactant to reach steady-state adsorption conditions compared to the slow adsorption kinetics previously seen with the surfactant at the hydrophilic surface. Adsorption isotherms, based on Raman signal intensities from spectral analysis, were developed according to the Langmuir adsorption model for the pure surfactant at the OTS-silica-water interface; the modified Langmuir model was applied to the surfactant adsorption in the presence of 5, 10, 50, and 100 mM magnesium chloride. Spectral analysis of the Raman scattering intensities and geometric considerations suggests a hemimicelle-type surface aggregate as the most likely surfactant structure at the OTS-silica surface. The different kinetics observed at the hydrophilic versus the hydrophobic silica surface further indicate that the surface charge and potential influence the surfactant diffusion and kinetic rates of adsorption at the silica-water interface.

tir- and stx-Positive Escherichia coli in Stream Waters in a Metropolitan Area

PubMed Central

Higgins, James A.; Belt, Kenneth T.; Karns, Jeffrey S.; Russell-Anelli, Jonathan; Shelton, Daniel R.

2005-01-01

Diarrheagenic Escherichia coli, which may include the enteropathogenic E. coli and the enterohemorrhagic E. coli, are a significant cause of diarrheal disease among infants and children in both developing and developed areas. Disease outbreaks related to freshwater exposure have been documented, but the presence of these organisms in the urban aquatic environment is not well characterized. From April 2002 through April 2004 we conducted weekly surveys of streams in the metropolitan Baltimore, Md., area for the prevalence of potentially pathogenic E. coli by using PCR assays targeting the tir and stx1 and stx2 genes. Coliforms testing positive for the presence of the tir gene were cultured from 653 of 1,218 samples (53%), with a greater prevalence associated with urban, polluted streams than in suburban and forested watershed streams. Polluted urban streams were also more likely to test positive for the presence of one of the stx genes. Sequence analysis of the tir amplicon, as well as the entire tir gene from three isolates, indicated that the pathogenic E. coli present in the stream waters has a high degree of sequence homology with the E. coli O157:H7 serotype. Our data indicate that pathogenic E. coli are continually deposited into a variety of stream habitats and suggest that this organism may be a permanent member of the gastrointestinal microflora of humans and animals in the metropolitan Baltimore area. PMID:15870341

Crystal structure of Toll-like receptor adaptor MAL/TIRAP reveals the molecular basis for signal transduction and disease protection

PubMed Central

Valkov, Eugene; Stamp, Anna; DiMaio, Frank; Baker, David; Verstak, Brett; Roversi, Pietro; Kellie, Stuart; Sweet, Matthew J.; Mansell, Ashley; Gay, Nicholas J.; Martin, Jennifer L.; Kobe, Bostjan

2011-01-01

Initiation of the innate immune response requires agonist recognition by pathogen-recognition receptors such as the Toll-like receptors (TLRs). Toll/interleukin-1 receptor (TIR) domain-containing adaptors are critical in orchestrating the signal transduction pathways after TLR and interleukin-1 receptor activation. Myeloid differentiation primary response gene 88 (MyD88) adaptor-like (MAL)/TIR domain-containing adaptor protein (TIRAP) is involved in bridging MyD88 to TLR2 and TLR4 in response to bacterial infection. Genetic studies have associated a number of unique single-nucleotide polymorphisms in MAL with protection against invasive microbial infection, but a molecular understanding has been hampered by a lack of structural information. The present study describes the crystal structure of MAL TIR domain. Significant structural differences exist in the overall fold of MAL compared with other TIR domain structures: A sequence motif comprising a β-strand in other TIR domains instead corresponds to a long loop, placing the functionally important “BB loop” proline motif in a unique surface position in MAL. The structure suggests possible dimerization and MyD88-interacting interfaces, and we confirm the key interface residues by coimmunoprecipitation using site-directed mutants. Jointly, our results provide a molecular and structural basis for the role of MAL in TLR signaling and disease protection. PMID:21873236

The Oxford space environment goniometer: A new experimental setup for making directional emissivity measurements under a simulated space environment

NASA Astrophysics Data System (ADS)

Warren, T. J.; Bowles, N. E.; Donaldson Hanna, K.; Thomas, I. R.

2017-12-01

Measurements of the light scattering behaviour of the regoliths of airless bodies via remote sensing techniques in the Solar System, across wavelengths from the visible to the far infrared, are essential in understanding their surface properties. A key parameter is knowledge of the angular behaviour of scattered light, usually represented mathematically by a phase function. The phase function is believed to be dependent on many factors including the following: surface composition, surface roughness across all length scales, and the wavelength of radiation. Although there have been many phase function measurements of regolith analog materials across visible wavelengths, there have been no equivalent measurements made in the thermal infrared (TIR). This may have been due to a lack of TIR instruments as part of planetary remote sensing payloads. However, since the launch of Diviner to the Moon in 2009, OSIRIS-Rex to the asteroid Bennu in 2016, and the planned launch of BepiColombo to Mercury in 2018, there is now a large quantity of TIR remote sensing data that need to be interpreted. It is therefore important to extend laboratory phase function measurements to the TIR. This paper describes the design, build, calibration, and initial measurements from a new laboratory instrument that is able to make phase function measurements of analog planetary regoliths across wavelengths from the visible to the TIR.

Decoy peptide targeted to Toll-IL-1R domain inhibits LPS and TLR4-active metabolite morphine-3 glucuronide sensitization of sensory neurons.

PubMed

Allette, Yohance M; Kim, Youngsook; Randolph, Aaron L; Smith, Jared A; Ripsch, Matthew S; White, Fletcher A

2017-06-16

Accumulating evidence indicates that Toll-like receptor (TLR) signaling adapter protein interactions with Toll/Interleukin-1 Receptor (TIR) domains present in sensory neurons may modulate neuropathic pain states. Following ligand interaction with TLRs, TIR serves to both initiate intracellular signaling and facilitate recruitment of signaling adapter proteins to the intracytoplasmic domain. Although TLR TIR is central to a number of TLR signaling cascades, its role in sensory neurons is poorly understood. In this study we investigated the degree to which TLR TIR decoy peptide modified to include a TAT sequence (Trans-Activator of Transcription gene in HIV; TAT-4BB) affected LPS-induced intracellular calcium flux and excitation in sensory neurons, and behavioral changes due to TLR4 active metabolite, morphine-3-glucuronide (M3G) exposure in vivo. TAT-4BB inhibited LPS-induced calcium changes in a majority of sensory neurons and decreased LPS-dependent neuronal excitability in small diameter neurons. Acute systemic administration of the TAT-4BB reversed M3G-induced tactile allodynia in a dose-dependent manner but did not affect motor activity, anxiety or responses to noxious thermal stimulus. These data suggest that targeting TLR TIR domains may provide novel pharmacological targets to reduce or reverse TLR4-dependent pain behavior in the rodent.

Bacillus anthracis TIR Domain-Containing Protein Localises to Cellular Microtubule Structures and Induces Autophagy.

PubMed

Carlsson, Emil; Thwaite, Joanne E; Jenner, Dominic C; Spear, Abigail M; Flick-Smith, Helen; Atkins, Helen S; Byrne, Bernadette; Ding, Jeak Ling

2016-01-01

Toll-like receptors (TLRs) recognise invading pathogens and mediate downstream immune signalling via Toll/IL-1 receptor (TIR) domains. TIR domain proteins (Tdps) have been identified in multiple pathogenic bacteria and have recently been implicated as negative regulators of host innate immune activation. A Tdp has been identified in Bacillus anthracis, the causative agent of anthrax. Here we present the first study of this protein, designated BaTdp. Recombinantly expressed and purified BaTdp TIR domain interacted with several human TIR domains, including that of the key TLR adaptor MyD88, although BaTdp expression in cultured HEK293 cells had no effect on TLR4- or TLR2- mediated immune activation. During expression in mammalian cells, BaTdp localised to microtubular networks and caused an increase in lipidated cytosolic microtubule-associated protein 1A/1B-light chain 3 (LC3), indicative of autophagosome formation. In vivo intra-nasal infection experiments in mice showed that a BaTdp knockout strain colonised host tissue faster with higher bacterial load within 4 days post-infection compared to the wild type B. anthracis. Taken together, these findings indicate that BaTdp does not play an immune suppressive role, but rather, its absence increases virulence. BaTdp present in wild type B. anthracis plausibly interact with the infected host cell, which undergoes autophagy in self-defence.

A data mining approach for sharpening satellite thermal imagery over land

USDA-ARS?s Scientific Manuscript database

Thermal infrared (TIR) imagery is normally acquired at coarser pixel resolution than that of shortwave sensors on the same satellite platform and often the TIR resolution is not suitable for monitoring crop conditions of individual fields or the impacts of land cover changes which are at significant...

Photogrammetric 3d Building Reconstruction from Thermal Images

NASA Astrophysics Data System (ADS)

Maset, E.; Fusiello, A.; Crosilla, F.; Toldo, R.; Zorzetto, D.

2017-08-01

This paper addresses the problem of 3D building reconstruction from thermal infrared (TIR) images. We show that a commercial Computer Vision software can be used to automatically orient sequences of TIR images taken from an Unmanned Aerial Vehicle (UAV) and to generate 3D point clouds, without requiring any GNSS/INS data about position and attitude of the images nor camera calibration parameters. Moreover, we propose a procedure based on Iterative Closest Point (ICP) algorithm to create a model that combines high resolution and geometric accuracy of RGB images with the thermal information deriving from TIR images. The process can be carried out entirely by the aforesaid software in a simple and efficient way.

Tapered laser rods as a means of minimizing the path length of trapped barrel mode rays

DOEpatents

Beach, Raymond J.; Honea, Eric C.; Payne, Stephen A.; Mercer, Ian; Perry, Michael D.

2005-08-30

By tapering the diameter of a flanged barrel laser rod over its length, the maximum trapped path length of a barrel mode can be dramatically reduced, thereby reducing the ability of the trapped spontaneous emission to negatively impact laser performance through amplified spontaneous emission (ASE). Laser rods with polished barrels and flanged end caps have found increasing application in diode array end-pumped laser systems. The polished barrel of the rod serves to confine diode array pump light within the rod. In systems utilizing an end-pumping geometry and such polished barrel laser rods, the pump light that is introduced into one or both ends of the laser rod, is ducted down the length of the rod via the total internal reflections (TIRs) that occur when the light strikes the rod's barrel. A disadvantage of using polished barrel laser rods is that such rods are very susceptible to barrel mode paths that can trap spontaneous emission over long path lengths. This trapped spontaneous emission can then be amplified through stimulated emission resulting in a situation where the stored energy available to the desired lasing mode is effectively depleted, which then negatively impacts the laser's performance, a result that is effectively reduced by introducing a taper onto the laser rod.

An intercomparison of remotely sensed soil moisture products at various spatial scales over the Iberian penisula

USDA-ARS?s Scientific Manuscript database

Soil moisture (SM) can be retrieved from active microwave (AM)-, passive microwave (PM)- and thermal infrared (TIR)-observations, each having their unique spatial- and temporal-coverage. A limitation of TIR-based SM retrievals is its dependency on cloud-free conditions, while microwave retrievals ar...

19 CFR 18.3 - Transshipment; transfer by bonded cartmen.

Code of Federal Regulations, 2012 CFR

2012-04-01

... under Customs supervision to another single conveyance while en route to the port of destination or... exportation. (c) Merchandise covered by a TIR carnet may be transshipped in a case involving the unlading of... en route. In the event of transshipment, a TIR approved container or road vehicle shall be used if...

19 CFR 18.3 - Transshipment; transfer by bonded cartmen.

Code of Federal Regulations, 2010 CFR

2010-04-01

... under Customs supervision to another single conveyance while en route to the port of destination or... exportation. (c) Merchandise covered by a TIR carnet may be transshipped in a case involving the unlading of... en route. In the event of transshipment, a TIR approved container or road vehicle shall be used if...

19 CFR 18.3 - Transshipment; transfer by bonded cartmen.

Code of Federal Regulations, 2013 CFR

2013-04-01

... under Customs supervision to another single conveyance while en route to the port of destination or... exportation. (c) Merchandise covered by a TIR carnet may be transshipped in a case involving the unlading of... en route. In the event of transshipment, a TIR approved container or road vehicle shall be used if...

19 CFR 18.3 - Transshipment; transfer by bonded cartmen.

Code of Federal Regulations, 2014 CFR

2014-04-01

... under Customs supervision to another single conveyance while en route to the port of destination or... exportation. (c) Merchandise covered by a TIR carnet may be transshipped in a case involving the unlading of... en route. In the event of transshipment, a TIR approved container or road vehicle shall be used if...

19 CFR 18.3 - Transshipment; transfer by bonded cartmen.

Code of Federal Regulations, 2011 CFR

2011-04-01

... under Customs supervision to another single conveyance while en route to the port of destination or... exportation. (c) Merchandise covered by a TIR carnet may be transshipped in a case involving the unlading of... en route. In the event of transshipment, a TIR approved container or road vehicle shall be used if...

Assembly of Landsat's TIRS Instrument

NASA Image and Video Library

2012-02-14

Aleksandra Bogunovic reaches across the instrument to affix the corners of a Multi-Layer Insulation blanket to the TIRS instrument. The Thermal Infrared Sensor (TIRS) will fly on the next Landsat satellite, the Landsat Data Continuity Mission (LDCM). TIRS was built on an accelerated schedule at NASA's Goddard Space Flight Center, Greenbelt, Md. and will now be integrated into the LDCM spacecraft at Orbital Science Corp. in Gilbert, Ariz. The Landsat Program is a series of Earth observing satellite missions jointly managed by NASA and the U.S. Geological Survey. Landsat satellites have been consistently gathering data about our planet since 1972. They continue to improve and expand this unparalleled record of Earth's changing landscapes for the benefit of all. For more information on Landsat, visit: www.nasa.gov/landsat Credit: NASA/GSFC/Rebecca Roth NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Assessing the thermo-mechanical TaMeTirE model in offline vehicle simulation and driving simulator tests

NASA Astrophysics Data System (ADS)

Durand-Gasselin, Benoit; Dailliez, Thibault; Mössner-Beigel, Monika; Knorr, Stephanie; Rauh, Jochen

2010-12-01

This paper presents the experiences using Michelin's thermo-mechanical TaMeTirE tyre model for real-time handling applications in the field of advanced passenger car simulation. Passenger car handling simulations were performed using the tyre model in a full-vehicle real-time environment in order to assess TaMeTirE's level of consistency with real on-track handling behaviour. To achieve this goal, a first offline comparison with a state-of-the-art handling tyre model was carried out on three handling manoeuvres. Then, online real-time simulations of steering wheel steps and slaloms in straight line were run on Daimler's driving simulator by skilled and unskilled drivers. Two analytical tyre temperature effects and two inflation pressure effects were carried out in order to feel their impact on the handling behaviour of the vehicle. This paper underlines the realism of the handling simulation results performed with TaMeTirE, and shows the significant impact of a pressure or a temperature effect on the handling behaviour of a car.

Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Markham, Brian; Irons, James; Dabney, Philip

2011-01-01

The Landsat Data Continuity Mission (LDCM) is currently under development and is on schedule to launch the 8th satellite in the Landsat series in December of 2012. LDCM is a joint project between the National Aeronautics and Space Administration (NASA) and the United States Geological Survey (USGS). NASA is responsible for developing and launching the flight hardware and on-orbit commissioning and USGS is responsible for developing the ground system and operating the system onorbit after commissioning. Key components of the flight hardware are the Operational Land Imager (OLI), nearing completion by Ball Aerospace & Technologies Corp in Boulder, CO, the Thermal Infrared Sensor (TIRS), being built by NASA's Goddard Space Flight Center and the spacecraft, undergoing integration at Orbital Sciences Corp in Gilbert, Arizona. The launch vehicle will be an Atlas-5 with launch services provided by NASA's Kennedy Space Center. Key ground systems elements are the Mission Operations Element, being developed by the Hammers Corporation, and the Collection Activity Planning Element, Ground Network Element, and Data Processing and Archive System, being developed internally by the USGS Earth Resources Observations and Science (EROS) Center. The primary measurement goal of LDCM is to continue the global coverage of moderate spatial resolution imagery providing continuity with the existing Landsat record. The science goal for this imagery is to monitor land use and land cover, particularly as it relates to global climate change. Together the OLI and TIRS instruments on LDCM replace the ETM+ instrument on Landsat-7 with significant enhancements. The OLI is a pushbroom design instrument where the scanning mechanism of the ETM+ is effectively replaced by a long line of detectors. The OLI has 9 spectral bands with similar spatial resolution to ETM+: 7 of them similar to the reflective spectral bands on ETM+ and two new bands. The two new bands cover (1) the shorter wavelength blue part of the spectrum to help with coastal studies and aerosol analyses/atmospheric correction and (2) an atmospheric water absorption band, where the Earth surface is generally not visible, but Cirrus clouds are, to aid in cloud detection and screening. The radiometry of OLI benefits from improved SNR, dynamic range and quantization. OLI is undergoing system testing with a delivery scheduled for Spring 2011. The TIRS is also a pushbroom design and used QWIPS detectors that require cooling to 43K using a cryocooler. It.has two spectral bands, effectively splitting the ETM+ band 6 in half, that can be used as a split window to aid in atmospheric correction. It has nominally 100 m spatial resolution as opposed to the 60 m of Landsat-7 ETM+: TIRS has commenced integration and test, with a delivery to the spacecraft vendor scheduled for Winter 2011-2012. The Orbital spacecraft currently being integrated for LDCM will have improved capabilities for pointing over previous missions. These capabilities will allow the OLI and TIRS instruments to point off-nadir the equivalent of one WRS-2 path to increase the chances of coverage for high priority targets, particularly in the event of natural disasters. Also, the pointing capability will allow the calibration of the OLI using the sun (roughly weekly), the moon (monthly), stars (during commissioning) and the Earth (at 90 deg from normal orientation, a.k.a., side slither) quarterly. The solar calibration will be used for OLI absolute and relative calibration, the moon for trending the stability of the OLI response, the stars will be used for Line of Sight determination and the side slither will be an alternate OLI and relative gain determination methodology. The spacecraft is scheduled to begin integration with the OLI instrument in Summer 2011. The LDCM data processing and archive system (DPAS), located at USGS EROS, generates the products for distribution to users. Like Landsat-7 this includes an image assessment system for characrizing instrument performance and updating calibration parameters. Products will be generated that include the spectral bands from both instruments, terrain corrected and registered to the geoid. Also, like Landsat-7, data products will be distributed at no charge to the user. The current status and plans of the space and ground segments of the LDCM project will be presented along with performance predictions as available. More detailed information on the two instruments is intended to be presented in separate papers.

TIR-only protein RBA1 recognizes a pathogen effector to regulate cell death in Arabidopsis

PubMed Central

Anderson, Ryan G.; Cherkis, Karen A.; Law, Terry F.; Liu, Qingli L.; Machius, Mischa; Nimchuk, Zachary L.; Yang, Li; Chung, Eui-Hwan; El Kasmi, Farid; Hyunh, Michael; Sondek, John E.; Dangl, Jeffery L.

2017-01-01

Detection of pathogens by plants is mediated by intracellular nucleotide-binding site leucine-rich repeat (NLR) receptor proteins. NLR proteins are defined by their stereotypical multidomain structure: an N-terminal Toll–interleukin receptor (TIR) or coiled-coil (CC) domain, a central nucleotide-binding (NB) domain, and a C-terminal leucine-rich repeat (LRR). The plant innate immune system contains a limited NLR repertoire that functions to recognize all potential pathogens. We isolated Response to the bacterial type III effector protein HopBA1 (RBA1), a gene that encodes a TIR-only protein lacking all other canonical NLR domains. RBA1 is sufficient to trigger cell death in response to HopBA1. We generated a crystal structure for HopBA1 and found that it has similarity to a class of proteins that includes esterases, the heme-binding protein ChaN, and an uncharacterized domain of Pasteurella multocida toxin. Self-association, coimmunoprecipitation with HopBA1, and function of RBA1 require two previously identified TIR–TIR dimerization interfaces. Although previously described as distinct in other TIR proteins, in RBA1 neither of these interfaces is sufficient when the other is disrupted. These data suggest that oligomerization of RBA1 is required for function. Our identification of RBA1 demonstrates that “truncated” NLRs can function as pathogen sensors, expanding our understanding of both receptor architecture and the mechanism of activation in the plant immune system. PMID:28137883

Generating High-Temporal and Spatial Resolution TIR Image Data

NASA Astrophysics Data System (ADS)

Herrero-Huerta, M.; Lagüela, S.; Alfieri, S. M.; Menenti, M.

2017-09-01

Remote sensing imagery to monitor global biophysical dynamics requires the availability of thermal infrared data at high temporal and spatial resolution because of the rapid development of crops during the growing season and the fragmentation of most agricultural landscapes. Conversely, no single sensor meets these combined requirements. Data fusion approaches offer an alternative to exploit observations from multiple sensors, providing data sets with better properties. A novel spatio-temporal data fusion model based on constrained algorithms denoted as multisensor multiresolution technique (MMT) was developed and applied to generate TIR synthetic image data at both temporal and spatial high resolution. Firstly, an adaptive radiance model is applied based on spectral unmixing analysis of . TIR radiance data at TOA (top of atmosphere) collected by MODIS daily 1-km and Landsat - TIRS 16-day sampled at 30-m resolution are used to generate synthetic daily radiance images at TOA at 30-m spatial resolution. The next step consists of unmixing the 30 m (now lower resolution) images using the information about their pixel land-cover composition from co-registered images at higher spatial resolution. In our case study, TIR synthesized data were unmixed to the Sentinel 2 MSI with 10 m resolution. The constrained unmixing preserves all the available radiometric information of the 30 m images and involves the optimization of the number of land-cover classes and the size of the moving window for spatial unmixing. Results are still being evaluated, with particular attention for the quality of the data streams required to apply our approach.

Arc Jet Testing of the TIRS Cover Thermal Protection System for Mars Exploration Rover

NASA Technical Reports Server (NTRS)

Szalai, Christine E.; Chen, Y.-K.; Loomis, Mark; Hui, Frank; Scrivens, Larry

2002-01-01

This paper summarizes the arc jet test results of the Mars Exploration Rover (MER) Silicone Impregnated Reusable Ceramic Ablator (SIRCA) Transverse Impulse Rocket System (TIRS) Cover test series in the Panel Test Facility (PTF) at NASA Ames Research Center (ARC). NASA ARC performed aerothermal environment analyses, TPS sizing and thermal response analyses, and arc jet testing to evaluate the MER SIRCA TIRS Cover design and interface to the aeroshell structure. The primary objective of this arc jet test series was to evaluate specific design details of the SIRCA TIRS Cover interface to the MER aeroshell under simulated atmospheric entry heating conditions. Four test articles were tested in an arc jet environment with various sea] configurations. The test condition was designed to match the predicted peak flight heat load at the gap region between the SIRCA and the backshell TPS material, SLA-561S, and resulted in an over-test (with respect to heat flux and heat load) for the apex region of the SIRCA TIRS Cover. The resulting pressure differential was as much as twenty times that predicted for the flight case, depending on the location, and there was no post-test visual evidence of over-heating or damage to the seal, bracket, or backshell structure. The exposed titanium bolts were in good condition at post-test and showed only a small amount of oxidation at the leading edge locations. Repeatable thermocouple data were obtained and SIRCA thermal response analyses were compared to applicable thermocouple data. For the apex region of the SIRCA TIRS Cover, a one-dimensional thermal response prediction proved overly conservative, as there were strong multi-dimensional conduction effects evident from the thermocouple data. The one-dimensional thermal response prediction compared well with the thermocouple data for the leading edge "lip" region at the bolt location. In general, the test results yield confidence in the baseline seal design to prevent hot gas ingestion at the bracket and composite aeroshell structure interface.

Development of Thermal Infrared Sensor to Supplement Operational Land Imager

NASA Technical Reports Server (NTRS)

Shu, Peter; Waczynski, Augustyn; Kan, Emily; Wen, Yiting; Rosenberry, Robert

2012-01-01

The thermal infrared sensor (TIRS) is a quantum well infrared photodetector (QWIP)-based instrument intended to supplement the Operational Land Imager (OLI) for the Landsat Data Continuity Mission (LDCM). The TIRS instrument is a far-infrared imager operating in the pushbroom mode with two IR channels: 10.8 and 12 m. The focal plane will contain three 640 512 QWIP arrays mounted onto a silicon substrate. The readout integrated circuit (ROIC) addresses each pixel on the QWIP arrays and reads out the pixel value (signal). The ROIC is controlled by the focal plane electronics (FPE) by means of clock signals and bias voltage value. The means of how the FPE is designed to control and interact with the TIRS focal plane assembly (FPA) is the basis for this work. The technology developed under the FPE is for the TIRS focal plane assembly (FPA). The FPE must interact with the FPA to command and control the FPA, extract analog signals from the FPA, and then convert the analog signals to digital format and send them via a serial link (USB) to a computer. The FPE accomplishes the described functions by converting electrical power from generic power supplies to the required bias power that is needed by the FPA. The FPE also generates digital clocking signals and shifts the typical transistor-to-transistor logic (TTL) to }5 V required by the FPA. The FPE also uses an application- specific integrated circuit (ASIC) named System Image, Digitizing, Enhancing, Controlling, And Retrieving (SIDECAR) from Teledyne Corp. to generate the clocking patterns commanded by the user. The uniqueness of the FPE for TIRS lies in that the TIRS FPA has three QWIP detector arrays, and all three detector arrays must be in synchronization while in operation. This is to avoid data skewing while observing Earth flying in space. The observing scenario may be customized by uploading new control software to the SIDECAR.

Bias assessment of lower and middle tropospheric CO2 concentrations of GOSAT/TANSO-FTS TIR version 1 product

NASA Astrophysics Data System (ADS)

Saitoh, Naoko; Kimoto, Shuhei; Sugimura, Ryo; Imasu, Ryoichi; Shiomi, Kei; Kuze, Akihiko; Niwa, Yosuke; Machida, Toshinobu; Sawa, Yousuke; Matsueda, Hidekazu

2017-10-01

CO2 observations in the free troposphere can be useful for constraining CO2 source and sink estimates at the surface since they represent CO2 concentrations away from point source emissions. The thermal infrared (TIR) band of the Thermal and Near Infrared Sensor for Carbon Observation (TANSO) Fourier transform spectrometer (FTS) on board the Greenhouse Gases Observing Satellite (GOSAT) has been observing global CO2 concentrations in the free troposphere for about 8 years and thus could provide a dataset with which to evaluate the vertical transport of CO2 from the surface to the upper atmosphere. This study evaluated biases in the TIR version 1 (V1) CO2 product in the lower troposphere (LT) and the middle troposphere (MT) (736-287 hPa), on the basis of comparisons with CO2 profiles obtained over airports using Continuous CO2 Measuring Equipment (CME) in the Comprehensive Observation Network for Trace gases by AIrLiner (CONTRAIL) project. Bias-correction values are presented for TIR CO2 data for each pressure layer in the LT and MT regions during each season and in each latitude band: 40-20° S, 20° S-20° N, 20-40° N, and 40-60° N. TIR V1 CO2 data had consistent negative biases of 1-1.5 % compared with CME CO2 data in the LT and MT regions, with the largest negative biases at 541-398 hPa, partly due to the use of 10 µm CO2 absorption band in conjunction with 15 and 9 µm absorption bands in the V1 retrieval algorithm. Global comparisons between TIR CO2 data to which the bias-correction values were applied and CO2 data simulated by a transport model based on the Nonhydrostatic ICosahedral Atmospheric Model (NICAM-TM) confirmed the validity of the bias-correction values evaluated over airports in limited areas. In low latitudes in the upper MT region (398-287 hPa), however, TIR CO2 data in northern summer were overcorrected by these bias-correction values; this is because the bias-correction values were determined using comparisons mainly over airports in Southeast Asia, where CO2 concentrations in the upper atmosphere display relatively large variations due to strong updrafts.

PHyTIR - A Prototype Thermal Infrared Radiometer

NASA Technical Reports Server (NTRS)

Jau, Bruno M.; Hook, Simon J.; Johnson, William R.; Foote, Marc C.; Paine, Christopher G.; Pannell, Zack W.; Smythe, Robert F.; Kuan, Gary M.; Jakoboski, Julie K.; Eng, Bjorn T.

2013-01-01

This paper describes the PHyTIR (Prototype HyspIRI Thermal Infrared Radiometer) instrument, which is the engineering model for the proposed HyspIRI (Hyperspectral Infrared Imager) earth observing instrument. The HyspIRI mission would be comprised of the HyspIRI TIR (Thermal Infrared Imager), and a VSWIR (Visible Short-Wave Infra-Red Imaging Spectrometer). Both instruments would be used to address key science questions related to the earth's carbon cycle, ecosystems, climate, and solid earth properties. Data gathering of volcanic activities, earthquakes, wildfires, water use and availability, urbanization, and land surface compositions and changes, would aid the predictions and evaluations of such events and the impact they create. Even though the proposed technology for the HyspIRI imager is mature, the PHyTIR prototype is needed to advance the technology levels for several of the instrument's key components, and to reduce risks, in particular to validate 1) the higher sensitivity, spatial resolution, and higher throughput required for this focal plane array, 2) the pointing accuracy, 2) the characteristics of several spectral channels, and 4) the use of ambient temperature optics. The PHyTIR telescope consists of the focal plane assembly that is housed within a cold housing located inside a vacuum enclosure; all mounted to a bulkhead, and an optical train that consists of 3 powered mirrors; extending to both sides of the bulkhead. A yoke connects the telescope to a scan mirror. The rotating mirror enables to scan- a large track on the ground. This structure is supported by kinematic mounts, linking the telescope assembly to a base plate that would also become the spacecraft interface for HyspIRI. The focal plane's cooling units are also mounted to the base plate, as is an overall enclosure that has two viewing ports with large exterior baffles, shielding the focal plane from incoming stray light. PHyTIR's electronics is distributed inside and near the vacuum enclosure, and in a nearby rack. The data acquisition technique would be to take measurements over a 51deg wide swath in the cross spacecraft velocity direction, which is brought into view through the rotating scan mirror. A landscape mosaic thus can be assembled by overlaying rows of measurements. The paper briefly outlines the proposed HyspIRI mission and its data acquisition technique; it then describes the prototype PHyTIR instrument.

Feasibility Study of LANDSAT-8 Imagery for Retrieving Sea Surface Temperature (case Study Persian Gulf)

NASA Astrophysics Data System (ADS)

Bayat, F.; Hasanlou, M.

2016-06-01

Sea surface temperature (SST) is one of the critical parameters in marine meteorology and oceanography. The SST datasets are incorporated as conditions for ocean and atmosphere models. The SST needs to be investigated for various scientific phenomenon such as salinity, potential fishing zone, sea level rise, upwelling, eddies, cyclone predictions. On the other hands, high spatial resolution SST maps can illustrate eddies and sea surface currents. Also, near real time producing of SST map is suitable for weather forecasting and fishery applications. Therefore satellite remote sensing with wide coverage of data acquisition capability can use as real time tools for producing SST dataset. Satellite sensor such as AVHRR, MODIS and SeaWIFS are capable of extracting brightness values at different thermal spectral bands. These brightness temperatures are the sole input for the SST retrieval algorithms. Recently, Landsat-8 successfully launched and accessible with two instruments on-board: (1) the Operational Land Imager (OLI) with nine spectral bands in the visual, near infrared, and the shortwave infrared spectral regions; and (2) the Thermal Infrared Sensor (TIRS) with two spectral bands in the long wavelength infrared. The two TIRS bands were selected to enable the atmospheric correction of the thermal data using a split window algorithm (SWA). The TIRS instrument is one of the major payloads aboard this satellite which can observe the sea surface by using the split-window thermal infrared channels (CH10: 10.6 μm to 11.2 μm; CH11: 11.5 μm to 12.5 μm) at a resolution of 30 m. The TIRS sensors have three main advantages comparing with other previous sensors. First, the TIRS has two thermal bands in the atmospheric window that provide a new SST retrieval opportunity using the widely used split-window (SW) algorithm rather than the single channel method. Second, the spectral filters of TIRS two bands present narrower bandwidth than that of the thermal band on board on previous Landsat sensors. Third, TIRS is one of the best space born and high spatial resolution with 30 m. in this regards, Landsat-8 can use the Split-Window (SW) algorithm for retrieving SST dataset. Although several SWs have been developed to use with other sensors, some adaptations are required in order to implement them for the TIRS spectral bands. Therefore, the objective of this paper is to develop a SW, adapted for use with Landsat-8 TIRS data, along with its accuracy assessment. In this research, that has been done for modelling SST using thermal Landsat 8-imagery of the Persian Gulf. Therefore, by incorporating contemporary in situ data and SST map estimated from other sensors like MODIS, we examine our proposed method with coefficient of determination (R2) and root mean square error (RMSE) on check point to model SST retrieval for Landsat-8 imagery. Extracted results for implementing different SW's clearly shows superiority of utilized method by R2 = 0.95 and RMSE = 0.24.

TIRS Cryocooler: Spacecraft Integration and Test and Early Flight Data

NASA Technical Reports Server (NTRS)

Boyle, R.; Marquardt, E.

2013-01-01

The Thermal Infrared Sensor (TIRS) is an instrument on Landsat 8, launched in February 2013. The focal plane is cooled by a two-stage Ball Aerospace Stirling cycle cryocooler, with a coldfinger operating at 40K. This paper describes events during the spacecraft integration and test program, and results from early orbit operation of the cryocooler.

Enhancement of photovoltaic cell performance using periodic triangular gratings

NASA Astrophysics Data System (ADS)

Bordatchev, Evgueni; Tauhiduzzaman, Mohammed; Dey, Rajat

2014-01-01

The solar energy industry strives to produce more efficient and yet cost effective solar panels each consisting of an array of photovoltaic (PV) cells. The goal of this study was to enhance the performance of PV cells through increasing the cells' optical efficiency defined as a percentage of surface incident light that reaches the PV material. This was achieved through the reduction of waveguide decoupling loss and Fresnel reflection losses by integrating specific nonimaging micro-optical structures on the top surface of existing PV cells. Due to this integration, optical efficiency and performance were increased through the enhancement of light trapping, light guiding, and in-coupling functionalities. Periodic triangular gratings (PTGs) were designed, nonsequentially modeled, optimized, and fabricated in polydimethylsiloxane as proposed micro-optical structures. Then the performance of PV cells with and without integrated PTGs was evaluated and compared. Initial optical simulation results show that an original PV cell (without PTG) exhibits an average optical efficiency of 32.7% over a range of incident light angles between 15 and 90 deg. Integration of the PTG allows the capture of incoming sunlight by total internal reflection (TIR), whence it is reflected back onto the PV cell for multiple consecutive chances for absorption and PV conversion. Geometry of the PTG was optimized with respect to an angle of light incidence of {15, 30, 45, 60, 75, 90} deg. Optical efficiency of the geometrically optimized PTGs was then analyzed under the same set of incident light angles and a maximum optical efficiency of 54.1% was observed for a PV cell with integrated PTG optimized at 90 deg. This is a 53.3% relative improvement in optical performance when compared to an original PV cell. Functional PTG prototypes were then fabricated with optical surface quality (below 10 nm Ra) and integrated with PV cells demonstrating an increase in maximum power by 1.08 mW/cm (7.6% improvement in PV performance) and in short circuit current by 2.39 mA/cm (6.4% improvement).

Geothermal area detection using Landsat ETM+ thermal infrared data and its mechanistic analysis—A case study in Tengchong, China

NASA Astrophysics Data System (ADS)

Qin, Qiming; Zhang, Ning; Nan, Peng; Chai, Leilei

2011-08-01

Thermal infrared (TIR) remote sensing is an important technique in the exploration of geothermal resources. In this study, a geothermal survey is conducted in Tengchong area of Yunnan province in China using TIR data from Landsat-7 Enhanced Thematic Mapper Plus (ETM+) sensor. Based on radiometric calibration, atmospheric correction and emissivity calculation, a simple but efficient single channel algorithm with acceptable precision is applied to retrieve the land surface temperature (LST) of study area. The LST anomalous areas with temperature about 4-10 K higher than background area are discovered. Four geothermal areas are identified with the discussion of geothermal mechanism and the further analysis of regional geologic structure. The research reveals that the distribution of geothermal areas is consistent with the fault development in study area. Magmatism contributes abundant thermal source to study area and the faults provide thermal channels for heat transfer from interior earth to land surface and facilitate the present of geothermal anomalies. Finally, we conclude that TIR remote sensing is a cost-effective technique to detect LST anomalies. Combining TIR remote sensing with geological analysis and the understanding of geothermal mechanism is an accurate and efficient approach to geothermal area detection.

Detection of geothermal anomalies in Tengchong, Yunnan Province, China from MODIS multi-temporal night LST imagery

NASA Astrophysics Data System (ADS)

Li, H.; Kusky, T. M.; Peng, S.; Zhu, M.

2012-12-01

Thermal infrared (TIR) remote sensing is an important technique in the exploration of geothermal resources. In this study, a geothermal survey is conducted in Tengchong area of Yunnan province in China using multi-temporal MODIS LST (Land Surface Temperature). The monthly night MODIS LST data from Mar. 2000 to Mar. 2011 of the study area were collected and analyzed. The 132 month average LST map was derived and three geothermal anomalies were identified. The findings of this study agree well with the results from relative geothermal gradient measurements. Finally, we conclude that TIR remote sensing is a cost-effective technique to detect geothermal anomalies. Combining TIR remote sensing with geological analysis and the understanding of geothermal mechanism is an accurate and efficient approach to geothermal area detection.

Global nature of Pc 5 magnetic pulsation during the WHI observation campaign

NASA Astrophysics Data System (ADS)

Fujimoto, A.; Tokunaga, T.; Abe, S.; Uozumi, T.; Yoshikawa, A.; Yumoto, K.; Group, M.

2008-12-01

In conjunction with the activities of IHY(International Heliophysical Year), an international observation campaign was planned and carried out from March 20 to April 16 of 2008. The name of this campaign is Whole Heliosphere Interval (WHI). During WHI, the nations of the world worked together to collect relevant scientific data. As a result, there now exists an exceptionally good data set of multi-point ground-based and satellite magnetometer data for this time frame. There were no clear and outstanding geomagnetic storms during WHI, but there were some moderate geomagnetically active moments. For example, on March 26, Dst index decreased from 25 nT to -41 nT for 10 hours(1000 -1900 UT). The amplitude of Pc 5 pulsation in the frequency band between 1.67 and 6.67 mHz at the MAGDAS stations increased for few days after March 26. Using magnetometer data obtained globally from ULTIMA(Ultra Large Terrestrial International Magnetic Array) stations, we will investigate the occurrence and wave characteristics(amplitude, period and phase) of Pc 5 pulsations. Particularly high-latitude Pc 5 observed at THEMIS (the Time History of Events and Macroscopic Interactions during Substorms), CARISMA(Canadian Array for Realtime Investigations of Magnetic Activity) and McMaC (Mid-continent Magnetoseismic Chain) stations will be compared with equatorial-latitude Pc 5 observed at MAGDAS stations(TIR, DAV, YAP, ANC, EUS, ILR, and UT=LT+5h, +8h, +9h, -5h, -2h and 0h, respectively). Acknowledgment: MAGDAS data used in this paper were obtained in mutual collaborations with the following representatives of various organizations; Prof. Archana Bhattacharya(Indian Institute of Geomagnetism, TIR), Fr. Daniel McNamara(Manila Observatory, DAV), Dr. David Aranug(Weather Service Office YAP, YAP), Dr. Ronald Woodman Pollitt(Instituto Geofisico del Peru, ANC), Dr. Severino L. G. Dutra(Brazilian National Space Research Institute (INPE), EUS), Dr. A. Babatunde Rabiu(Federal University of Technology, ILR).

Comparison of ASTER Global Emissivity Database (ASTER-GED) With In-Situ Measurement In Italian Vulcanic Areas

NASA Astrophysics Data System (ADS)

Silvestri, M.; Musacchio, M.; Buongiorno, M. F.; Amici, S.; Piscini, A.

2015-12-01

LP DAAC released the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Global Emissivity Database (GED) datasets on April 2, 2014. The database was developed by the National Aeronautics and Space Administration's (NASA) Jet Propulsion Laboratory (JPL), California Institute of Technology. The database includes land surface emissivities derived from ASTER data acquired over the contiguous United States, Africa, Arabian Peninsula, Australia, Europe, and China. In this work we compare ground measurements of emissivity acquired by means of Micro-FTIR (Fourier Thermal Infrared spectrometer) instrument with the ASTER emissivity map extract from ASTER-GED and the emissivity obtained by using single ASTER data. Through this analysis we want to investigate differences existing between the ASTER-GED dataset (average from 2000 to 2008 seasoning independent) and fall in-situ emissivity measurement. Moreover the role of different spatial resolution characterizing ASTER and MODIS, 90mt and 1km respectively, by comparing them with in situ measurements. Possible differences can be due also to the different algorithms used for the emissivity estimation, Temperature and Emissivity Separation algorithm for ASTER TIR band( Gillespie et al, 1998) and the classification-based emissivity method (Snyder and al, 1998) for MODIS. In-situ emissivity measurements have been collected during dedicated fields campaign on Mt. Etna vulcano and Solfatara of Pozzuoli. Gillespie, A. R., Matsunaga, T., Rokugawa, S., & Hook, S. J. (1998). Temperature and emissivity separation from Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) images. IEEE Transactions on Geoscience and Remote Sensing, 36, 1113-1125. Snyder, W.C., Wan, Z., Zhang, Y., & Feng, Y.-Z. (1998). Classification-based emissivity for land surface temperature measurement from space. International Journal of Remote Sensing, 19, 2753-2574.

Application of compound parabolic concentrators to solar photovoltaic conversion. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cole, R.L.; Gorski, A.J.; Graven, R.M.

1977-02-01

The final results of an analytical and experimental study of the application of nonimaging concentrators to solar photovoltaic conversion are presented. Two versions of the Compound Parabolic Concentrator (CPC) were considered, the Dielectric Compound Parabolic Concentrator (DCPC) in which the concentrator is filled with a dielectric material that satisfies requirements for Total Internal Reflection (TIR), and a conventional CPC in which metallic reflection is used for the mirror surfaces. Two working prototype panels were constructed and tested during the course of the program. The first was a 1.22 m by 1.22 m DCPC panel that requires only ten adjustments/year, hasmore » a panel utilization factor (packing factor) of 96%, and delivered the equivalent of 138 W (peak) under 1 kW/m/sup 2/ direct insolation. The net energy conversion efficiency was 10.3% over the entire panel area. The second panel was a conventional CPC panel measuring 1.22 m by 1.22 m. This panel requires thirty-six adjustments per year, and delivers the equivalent of 97 W when under 1 kW/m/sup 2/ direct insolation. The results of a cost-effectiveness analysis of the concept of using nonimaging concentrators for photovoltaic conversion are also presented. The concentrator panels showed a decided savings in comparison to the cost of flat plate photovoltaic panels, both at present-day silicon costs ($2000/m/sup 2/) and projected lower silicon costs ($200/m/sup 2/). At a silicon cost of $200/m/sup 2/, a two-dimensional (cone) version of the collector has the potential for achieving from $0.60-2.00 per average watt (about $0.15-0.50 per peak watt) while requiring only crude (+-4.5/sup 0/) tracking.« less

Comparison of in-situ measurements and satellite-derived surface emissivity over Italian volcanic areas

NASA Astrophysics Data System (ADS)

Silvestri, Malvina; Musacchio, Massimo; Cammarano, Diego; Fabrizia Buongiorno, Maria; Amici, Stefania; Piscini, Alessandro

2016-04-01

In this work we compare ground measurements of emissivity collected during dedicated fields campaign on Mt. Etna and Solfatara of Pozzuoli volcanoes and acquired by means of Micro-FTIR (Fourier Thermal Infrared spectrometer) instrument with the emissivity obtained by using single ASTER data (Advanced Spaceborne Thermal Emission and Reflection Radiometer, ASTER 05) and the ASTER emissivity map extract from ASTER Global Emissivity Database (GED), released by LP DAAC on April 2, 2014. The database was developed by the National Aeronautics and Space Administration's (NASA) Jet Propulsion Laboratory (JPL), California Institute of Technology. The database includes land surface emissivity derived from ASTER data acquired over the contiguous United States, Africa, Arabian Peninsula, Australia, Europe, and China. Through this analysis we want to investigate the differences existing between the ASTER-GED dataset (average from 2000 to 2008 seasoning independent) and fall in-situ emissivity measurement. Moreover the role of different spatial resolution characterizing ASTER and MODIS, 90mt and 1km respectively, by comparing them with in situ measurements, is analyzed. Possible differences can be due also to the different algorithms used for the emissivity estimation, Temperature and Emissivity Separation algorithm for ASTER TIR band( Gillespie et al, 1998) and the classification-based emissivity method (Snyder and al, 1998) for MODIS. Finally land surface temperature products generated using ASTER-GED and ASTER 05 emissivity are also analyzed. Gillespie, A. R., Matsunaga, T., Rokugawa, S., & Hook, S. J. (1998). Temperature and emissivity separation from Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) images. IEEE Transactions on Geoscience and Remote Sensing, 36, 1113-1125. Snyder, W.C., Wan, Z., Zhang, Y., & Feng, Y.-Z. (1998). Classification-based emissivity for land surface temperature measurement from space. International Journal of Remote Sensing, 19, 2753-2574.

Long-Term RST Analysis of Anomalous TIR Sequences in Relation with Earthquakes Occurred in Greece in the Period 2004-2013

NASA Astrophysics Data System (ADS)

Eleftheriou, Alexander; Filizzola, Carolina; Genzano, Nicola; Lacava, Teodosio; Lisi, Mariano; Paciello, Rossana; Pergola, Nicola; Vallianatos, Filippos; Tramutoli, Valerio

2016-01-01

Real-time integration of multi-parametric observations is expected to accelerate the process toward improved, and operationally more effective, systems for time-Dependent Assessment of Seismic Hazard (t-DASH) and earthquake short-term (from days to weeks) forecast. However, a very preliminary step in this direction is the identification of those parameters (chemical, physical, biological, etc.) whose anomalous variations can be, to some extent, associated with the complex process of preparation for major earthquakes. In this paper one of these parameters (the Earth's emitted radiation in the Thermal InfraRed spectral region) is considered for its possible correlation with M ≥ 4 earthquakes occurred in Greece in between 2004 and 2013. The Robust Satellite Technique (RST) data analysis approach and Robust Estimator of TIR Anomalies (RETIRA) index were used to preliminarily define, and then to identify, significant sequences of TIR anomalies (SSTAs) in 10 years (2004-2013) of daily TIR images acquired by the Spinning Enhanced Visible and Infrared Imager on board the Meteosat Second Generation satellite. Taking into account the physical models proposed for justifying the existence of a correlation among TIR anomalies and earthquake occurrences, specific validation rules (in line with the ones used by the Collaboratory for the Study of Earthquake Predictability—CSEP—Project) have been defined to drive a retrospective correlation analysis process. The analysis shows that more than 93 % of all identified SSTAs occur in the prefixed space-time window around ( M ≥ 4) earthquake's time and location of occurrence with a false positive rate smaller than 7 %. Molchan error diagram analysis shows that such a correlation is far to be achievable by chance notwithstanding the huge amount of missed events due to frequent space/time data gaps produced by the presence of clouds over the scene. Achieved results, and particularly the very low rate of false positives registered on a so long testing period, seems already sufficient (at least) to qualify TIR anomalies (identified by RST approach and RETIRA index) among the parameters to be considered in the framework of a multi-parametric approach to t-DASH.

Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) Overview

USGS Publications Warehouse

,

2008-01-01

The National Aeronautics and Space Administration (NASA) launched Terra, the Earth Observing System's (EOS) flagship satellite platform on December 18, 1999. The polar-orbiting Terra contains five remote sensing instruments, which enable the scientific study and analyses of global terrestrial processes and manifestations of global change. One of the five instruments is the multispectral Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), which is built in Japan by a consortium of government, industry, and research groups. It has three spectral bands in the visible near-infrared region (VNIR), six bands in the shortwave infrared region (SWIR), and five bands in the thermal infrared region (TIR), with 15-, 30-, and 90-meter ground resolutions, respectively. This combination of wide spectral coverage and high spatial resolution allows ASTER to discriminate among a wide variety of surface materials. The VNIR subsystem also has a backward-viewing telescope for high-resolution (15-meter) stereoscopic observation in the along-track direction, which facilitates the generation of digital elevation models (DEM).

Spectral characterization of surface emissivities in the thermal infrared

NASA Astrophysics Data System (ADS)

Niclòs, Raquel; Mira, Maria; Valor, Enric; Caselles, Diego; García-Santos, Vicente; Caselles, Vicente; Sánchez, Juan M.

2015-04-01

Thermal infrared (TIR) remote sensing trends to hyperspectral sensors on board satellites in the last decades, e.g., the current EOS-MODIS and EOS-ASTER and future missions like HyspIRI, ECOSTRESS, THIRSTY and MISTIGRI. This study aims to characterize spectrally the emissive properties of several surfaces, mostly soils. A spectrometer ranging from 2 to 16 μm, D&P Model 102, has been used to measure samples with singular spectral features, e.g. a sandy soil rich in gypsum sampled in White Sands (New Mexico, USA), salt samples, powdered quartz, and powdered calcite. These samples were chosen for their role in the assessment of thermal emissivity of soils, e.g., the calcite and quartz contents are key variables for modeling TIR emissivities of bare soils, along with soil moisture and organic matter. Additionally, the existence of large areas in the world with abundance of these materials, some of them used for calibration/validation activities of satellite sensors and products, makes the chosen samples interesting. White Sands is the world's largest gypsum dune field encompassing 400 km^2; the salt samples characterize the Salar of Uyuni (Bolivia), the largest salt flat in the world (up to 10,000 km^2), as well as the Jordanian and Israeli salt evaporation ponds at the south end of the Dead Sea, or the evaporation lagoons in Aigües-Mortes (France); and quartz is omnipresent in most of the arid regions of the world such as the Algodones Dunes or Kelso Dunes (California, USA), with areas around 700 km2 and 120 km^2, respectively. Measurements of target leaving radiance, hemispherical radiance reflected by a diffuse reflectance panel, and the radiance from a black body at different temperatures were taken to obtain thermal spectra with the D&P spectrometer. The good consistency observed between our measurements and laboratory spectra of similar samples (ASTER and MODIS spectral libraries) indicated the validity of the measurement protocol. Further, our study showed the high precision achieved by in situ spectra of real covers (instead of laboratory measurements over microscopic portions of samples). Several spectral features were observed: 1) the high spectral contrast of gypsum in the TIR, which emissivity decreases from 0.98 up to 0.70 around 8.6 μm, 2) the broad absorption band of salt in the infrared (low emissivity at wavelengths lower than 16.7 μm), 3) the weak absorption feature of the quartz Reststrahlen bands (low emissivity between 7.7 and 9.7 μm, and near 12.6 μm), and 4) the absorption features near 11.4 μm and 14.0 μm characteristics of calcite.

Infrared instrument support for HyspIRI-TIR

NASA Astrophysics Data System (ADS)

Johnson, William R.; Hook, Simon J.; Foote, Marc; Eng, Bjorn T.; Jau, Bruno

2012-10-01

The Jet Propulsion Laboratory is currently developing an end-to-end instrument which will provide a proof of concept prototype vehicle for a high data rate, multi-channel, thermal instrument in support of the Hyperspectral Infrared Imager (HyspIRI)-Thermal Infrared (TIR) space mission. HyspIRI mission was recommended by the National Research Council Decadal Survey (DS). The HyspIRI mission includes a visible shortwave infrared (SWIR) pushboom spectrometer and a multispectral whiskbroom thermal infrared (TIR) imager. The prototype testbed instrument addressed in this effort will only support the TIR. Data from the HyspIRI mission will be used to address key science questions related to the Solid Earth and Carbon Cycle and Ecosystems focus areas of the NASA Science Mission Directorate. Current designs for the HyspIRI-TIR space borne imager utilize eight spectral bands delineated with filters. The system will have 60m ground resolution, 200mK NEDT, 0.5C absolute temperature resolution with a 5-day repeat from LEO orbit. The prototype instrument will use mercury cadmium telluride (MCT) technology at the focal plane array in time delay integration mode. A custom read out integrated circuit (ROIC) will provide the high speed readout hence high data rates needed for the 5 day repeat. The current HyspIRI requirements dictate a ground knowledge measurement of 30m, so the prototype instrument will tackle this problem with a newly developed interferometeric metrology system. This will provide an absolute measurement of the scanning mirror to an order of magnitude better than conventional optical encoders. This will minimize the reliance on ground control points hence minimizing post-processing (e.g. geo-rectification computations).

High speed, multi-channel, thermal instrument development in support of HyspIRI-TIR

NASA Astrophysics Data System (ADS)

Johnson, William R.; Hook, Simon J.; Foote, Marc; Eng, Bjorn T.; Jau, Bruno

2011-10-01

The Jet Propulsion Laboratory is currently developing an end-to-end instrument which will provide a proof of concept prototype vehicle for a high data rate, multi-channel, thermal instrument in support of the Hyperspectral Infrared Imager (HyspIRI)-Thermal Infrared (TIR) space mission. HyspIRI mission was recommended by the National Research Council Decadal Survey (DS). The HyspIRI mission includes a visible shortwave infrared (SWIR) pushboom spectrometer and a multispectral whiskbroom thermal infrared (TIR) imager. The prototype testbed instrument addressed in this effort will only support the TIR. Data from the HyspIRI mission will be used to address key science questions related to the Solid Earth and Carbon Cycle and Ecosystems focus areas of the NASA Science Mission Directorate. Current designs for the HyspIRI-TIR space borne imager utilize eight spectral bands delineated with filters. The system will have 60m ground resolution, 200mK NEDT, 0.5C absolute temperature resolution with a 5-day repeat from LEO orbit. The prototype instrument will use mercury cadmium telluride (MCT) technology at the focal plane array in time delay integration mode. A custom read out integrated circuit (ROIC) will provide the high speed readout hence high data rates needed for the 5 day repeat. The current HyspIRI requirements dictate a ground knowledge measurement of 30m, so the prototype instrument will tackle this problem with a newly developed interferometeric metrology system. This will provide an absolute measurement of the scanning mirror to an order of magnitude better than conventional optical encoders. This will minimize the reliance on ground control points hence minimizing postprocessing (e.g. geo-rectification computations).

A Satellite-Based Imaging Instrumentation Concept for Hyperspectral Thermal Remote Sensing.

PubMed

Udelhoven, Thomas; Schlerf, Martin; Segl, Karl; Mallick, Kaniska; Bossung, Christian; Retzlaff, Rebecca; Rock, Gilles; Fischer, Peter; Müller, Andreas; Storch, Tobias; Eisele, Andreas; Weise, Dennis; Hupfer, Werner; Knigge, Thiemo

2017-07-01

This paper describes the concept of the hyperspectral Earth-observing thermal infrared (TIR) satellite mission HiTeSEM (High-resolution Temperature and Spectral Emissivity Mapping). The scientific goal is to measure specific key variables from the biosphere, hydrosphere, pedosphere, and geosphere related to two global problems of significant societal relevance: food security and human health. The key variables comprise land and sea surface radiation temperature and emissivity, surface moisture, thermal inertia, evapotranspiration, soil minerals and grain size components, soil organic carbon, plant physiological variables, and heat fluxes. The retrieval of this information requires a TIR imaging system with adequate spatial and spectral resolutions and with day-night following observation capability. Another challenge is the monitoring of temporally high dynamic features like energy fluxes, which require adequate revisit time. The suggested solution is a sensor pointing concept to allow high revisit times for selected target regions (1-5 days at off-nadir). At the same time, global observations in the nadir direction are guaranteed with a lower temporal repeat cycle (>1 month). To account for the demand of a high spatial resolution for complex targets, it is suggested to combine in one optic (1) a hyperspectral TIR system with ~75 bands at 7.2-12.5 µm (instrument NEDT 0.05 K-0.1 K) and a ground sampling distance (GSD) of 60 m, and (2) a panchromatic high-resolution TIR-imager with two channels (8.0-10.25 µm and 10.25-12.5 µm) and a GSD of 20 m. The identified science case requires a good correlation of the instrument orbit with Sentinel-2 (maximum delay of 1-3 days) to combine data from the visible and near infrared (VNIR), the shortwave infrared (SWIR) and TIR spectral regions and to refine parameter retrieval.

More than the sum of its parts? A merged satellite product from MODIS and AMSR2 sea ice concentration

NASA Astrophysics Data System (ADS)

Ludwig, V. S.; Istomina, L.; Spreen, G.

2017-12-01

Arctic sea ice concentration (SIC), the fraction of a grid cell that is covered by sea ice, is relevant for a multitude of branches: physics (heat/momentum exchange), chemistry (gas exchange), biology (photosynthesis), navigation (location of pack ice) and others. It has been observed from passive microwave (PMW) radiometers on satellites continuously since 1979, providing an almost 40-year time series. However, the resolution is limited to typically 25 km which is good enough for climate studies but too coarse to properly resolve the ice edge or to show leads. The highest resolution from PMW sensors today is 5 km of the AMSR2 89 GHz channels. Thermal infrared (TIR) and visible (VIS) measurements provide much higher resolutions between 1 km (TIR) and 30 m (VIS, regional daily coverage). The higher resolutions come at the cost of depending on cloud-free fields of view (TIR and VIS) and daylight (VIS). We present a merged product of ASI-AMSR2 SIC (PMW) and MODIS SIC (TIR) at a nominal resolution of 1 km. This product benefits from both the independence of PMW towards cloud coverage and the high resolution of TIR data. An independent validation data set has been produced from manually selected, cloud-free Landsat VIS data at 30 m resolution. This dataset is used to evaluate the performance of the merged SIC dataset. Our results show that the merged product resolves features which are smeared out by the PMW data while benefitting from the PMW data in cloudy cases and is thus indeed more than the sum of its parts.

Advances in analysis of pre-earthquake thermal anomalies by analyzing IR satellite data

NASA Astrophysics Data System (ADS)

Ouzounov, D.; Bryant, N.; Filizzola, C.; Pergola, N.; Taylor, P.; Tramutoli, V.

Presented work addresses the possible relationship between tectonic stress, electro-chemical and thermodynamic processes in the atmosphere and increasing infrared (IR) flux as part of a larger family of electromagnetic (EM) phenomena related to earthquake activity. Thermal infra-red (TIR) surveys performed by polar orbiting (NOAA/AVHRR, MODIS) and geosynchronous weather satellites (GOES, METEOSAT) seems to indicate the appearance (from days to weeks before the event) of "anomalous" space-time TIR transients associated with the place (epicentral area, linear structures and fault systems) and the time of occurrence of a number of major earthquakes with M>5 and focal depths no deeper than 50km. As Earth emitted in 8-14 microns range the TIR signal measured from satellite strongly vary depending on meteorological conditions and other factors (space-time changes in atmospheric transmittance, time/season, solar and satellite zenithal angles and etc) independent from seismic activity, a preliminary definition of "anomalous TIR signal" should be given. To provide reliable discrimination of thermal anomalous area from the natural events (seasonal changes, local morphology) new robust approach (RAT) has been recently proposed (and successfully applied in the field of the monitoring of the major environmental risks) that permits to give a statistically based definition of thermal info-red (TIR) anomaly and reduce of false events detection. New techniques also were specifically developed to assure the precise co-registration of all satellite scenes and permit accurate time-series analysis of satellite observations. As final results we present examples of most recent 2000/2004 worldwide strong earthquakes and the techniques used to capture the tracks of thermal emission mid-IR anomalies and methodology for practical future use of such phenomena in the early warning systems.

Tir Is Essential for the Recruitment of Tks5 to Enteropathogenic Escherichia coli Pedestals.

PubMed

Jensen, Helene H; Pedersen, Hans N; Stenkjær, Eva; Pedersen, Gitte A; Login, Frédéric H; Nejsum, Lene N

2015-01-01

Enteropathogenic Escherichia coli (EPEC) is a bacterial pathogen that infects the epithelial lining of the small intestine and causes diarrhea. Upon attachment to the intestinal epithelium, EPEC uses a Type III Secretion System to inject its own high affinity receptor Translocated intimin receptor (Tir) into the host cell. Tir facilitates tight adhesion and recruitment of actin-regulating proteins leading to formation of an actin pedestal beneath the infecting bacterium. The pedestal has several similarities with podosomes, which are basolateral actin-rich extensions found in some migrating animal cells. Formation of podosomes is dependent upon the early podosome-specific scavenger protein Tks5, which is involved in actin recruitment. Although Tks5 is expressed in epithelial cells, and podosomes and EPEC pedestals share many components in their structure and mechanism of formation, the potential role of Tks5 in EPEC infections has not been studied. The aim of this study was to determine the subcellular localization of Tks5 in epithelial cells and to investigate if Tks5 is recruited to the EPEC pedestal. In an epithelial MDCK cell line stably expressing Tks5-EGFP, Tks5 localized to actin bundles. Upon infection, EPEC recruited Tks5-EGFP. Tir, but not Tir phosphorylation was essential for the recruitment. Time-lapse microscopy revealed that Tks5-EGFP was recruited instantly upon EPEC attachment to host cells, simultaneously with actin and N-WASp. EPEC infection of cells expressing a ΔPX-Tks5 deletion version of Tks5 showed that EPEC was able to both infect and form pedestals when the PX domain was deleted from Tks5. Future investigations will clarify the role of Tks5 in EPEC infection and pedestal formation.

Tir Is Essential for the Recruitment of Tks5 to Enteropathogenic Escherichia coli Pedestals

PubMed Central

Jensen, Helene H.; Pedersen, Hans N.; Stenkjær, Eva; Pedersen, Gitte A.; Login, Frédéric H.; Nejsum, Lene N.

2015-01-01

Enteropathogenic Escherichia coli (EPEC) is a bacterial pathogen that infects the epithelial lining of the small intestine and causes diarrhea. Upon attachment to the intestinal epithelium, EPEC uses a Type III Secretion System to inject its own high affinity receptor Translocated intimin receptor (Tir) into the host cell. Tir facilitates tight adhesion and recruitment of actin-regulating proteins leading to formation of an actin pedestal beneath the infecting bacterium. The pedestal has several similarities with podosomes, which are basolateral actin-rich extensions found in some migrating animal cells. Formation of podosomes is dependent upon the early podosome-specific scavenger protein Tks5, which is involved in actin recruitment. Although Tks5 is expressed in epithelial cells, and podosomes and EPEC pedestals share many components in their structure and mechanism of formation, the potential role of Tks5 in EPEC infections has not been studied. The aim of this study was to determine the subcellular localization of Tks5 in epithelial cells and to investigate if Tks5 is recruited to the EPEC pedestal. In an epithelial MDCK cell line stably expressing Tks5-EGFP, Tks5 localized to actin bundles. Upon infection, EPEC recruited Tks5-EGFP. Tir, but not Tir phosphorylation was essential for the recruitment. Time-lapse microscopy revealed that Tks5-EGFP was recruited instantly upon EPEC attachment to host cells, simultaneously with actin and N-WASp. EPEC infection of cells expressing a ΔPX-Tks5 deletion version of Tks5 showed that EPEC was able to both infect and form pedestals when the PX domain was deleted from Tks5. Future investigations will clarify the role of Tks5 in EPEC infection and pedestal formation. PMID:26536015

Gene structure, cDNA characterization and RNAi-based functional analysis of a myeloid differentiation factor 88 homolog in Tenebrio molitor larvae exposed to Staphylococcus aureus infection.

PubMed

Patnaik, Bharat Bhusan; Patnaik, Hongray Howrelia; Seo, Gi Won; Jo, Yong Hun; Lee, Yong Seok; Lee, Bok Luel; Han, Yeon Soo

2014-10-01

Myeloid differentiation factor 88 (MyD88), an intracellular adaptor protein involved in Toll/Toll-like receptor (TLR) signal processing, triggers activation of nuclear factor-kappaB (NF-κB) transcription factors. In the present study, we analyzed the gene structure and biological function of MyD88 in a coleopteran insect, Tenebrio molitor (TmMyD88). The TmMyD88 gene was 1380 bp in length and consisted of five exons and four introns. The 5'-flanking sequence revealed several putative transcription factor binding sites, such as STAT-4, AP-1, cJun, cfos, NF-1 and many heat shock factor binding elements. The cDNA contained a typical death domain, a conservative Toll-like interleukin-1 receptor (TIR) domain, and a C-terminal extension (CTE). The TmMyD88 TIR domain showed three significantly conserved motifs for interacting with the TIR domain of TLRs. TmMyD88 was grouped within the invertebrate cluster of the phylogenetic tree and shared 75% sequence identity with the TIR domain of Tribolium castaneum MyD88. Homology modeling of the TmMyD88 TIR domain revealed five parallel β-strands surrounded by five α-helices that adopted loop conformations to function as an adaptor. TmMyD88 expression was upregulated 7.3- and 4.79-fold after 12 and 6h, respectively, of challenge with Staphylococcus aureus and fungal β-1,3 glucan. Silencing of the TmMyD88 transcript by RNA interference led to reduced resistance of the host to infection by S. aureus. These results indicate that TmMyD88 is required for survival against Staphylococcus infection. Copyright © 2014 Elsevier Ltd. All rights reserved.

Intercomparison of two BRDF models in the estimation of the directional emissivity in MIR channel from MSG1-SEVIRI data.

PubMed

Jiang, Geng-Ming; Li, Zhao-Liang

2008-11-10

This work intercompared two Bi-directional Reflectance Distribution Function (BRDF) models, the modified Minnaert's model and the RossThick-LiSparse-R model, in the estimation of the directional emissivity in Middle Infra-Red (MIR) channel from the data acquired by the Spinning Enhanced Visible and Infra-Red Imager (SEVIRI) onboard the first Meteosat Second Generation (MSG1). The bi-directional reflectances in SEVIRI channel 4 (3.9 microm) were estimated from the combined MIR and Thermal Infra-Red (TIR) data and then were used to estimate the directional emissivity in this channel with aid of the BRDF models. The results show that: (1) Both models can relatively well describe the non-Lambertian reflective behavior of land surfaces in SEVIRI channel 4; (2) The RossThick-LiSparse-R model is better than the modified Minnaert's model in modeling the bi-directional reflectances, and the directional emissivities modeled by the modified Minnaert's model are always lower than the ones obtained by the RossThick-LiSparse-R model with averaged emissivity differences of approximately 0.01 and approximately 0.04 over the vegetated and bare areas, respectively. The use of the RossThick-LiSparse-R model in the estimation of the directional emissivity in MIR channel is recommended.

Toll/Interleukin-1 Receptor Domain Derived from TcpC (TIR-TcpC) Ameliorates Experimental Autoimmune Arthritis by Down-modulating Th17 Cell Response*

PubMed Central

Pasi, Shweta; Kant, Ravi; Surolia, Avadhesha

2016-01-01

Evasion through immunomodulation is one of the several strategies adopted by pathogens to prolong their survival within the host. One such pathogen, Escherichia coli CFT073, utilizes an immunomodulatory protein, TcpC, to combat the host's innate immune defense. TcpC abrogates the function of MyD88 in macrophages, thus perturbing all the signaling processes that involve this adaptor protein. Although central to various signaling pathways initiated by IL-1, IL-18, and toll-like receptors, the precise contribution of MyD88 to the development of autoimmunity, particularly rheumatoid arthritis, still needs extensive exploration. Herein, by using the toll/interleukin-1 receptor (TIR) domain homologous C-terminal motif of TcpC, i.e. TIR-TcpC, we found MyD88 to be critical for the induction and progression of rheumatoid arthritis through its pivotal role in the development of Th17 cells, the subset of CD4+ T-cells widely implicated in various autoimmune disorders. The TIR-TcpC mediated inhibition of signaling through MyD88, and subsequent amelioration of experimental autoimmune arthritis was observed to be an outcome of perturbations in the NFκB-RORγt (RAR-related orphan receptor γt) axis. PMID:27022030

A Guide to Structured Illumination TIRF Microscopy at High Speed with Multiple Colors

PubMed Central

Young, Laurence J.; Ströhl, Florian; Kaminski, Clemens F.

2016-01-01

Optical super-resolution imaging with structured illumination microscopy (SIM) is a key technology for the visualization of processes at the molecular level in the chemical and biomedical sciences. Although commercial SIM systems are available, systems that are custom designed in the laboratory can outperform commercial systems, the latter typically designed for ease of use and general purpose applications, both in terms of imaging fidelity and speed. This article presents an in-depth guide to building a SIM system that uses total internal reflection (TIR) illumination and is capable of imaging at up to 10 Hz in three colors at a resolution reaching 100 nm. Due to the combination of SIM and TIRF, the system provides better image contrast than rival technologies. To achieve these specifications, several optical elements are used to enable automated control over the polarization state and spatial structure of the illumination light for all available excitation wavelengths. Full details on hardware implementation and control are given to achieve synchronization between excitation light pattern generation, wavelength, polarization state, and camera control with an emphasis on achieving maximum acquisition frame rate. A step-by-step protocol for system alignment and calibration is presented and the achievable resolution improvement is validated on ideal test samples. The capability for video-rate super-resolution imaging is demonstrated with living cells. PMID:27285848

A study of the proteorhodopsin primary photoreaction by low-temperature FTIR difference and ultrafast transient infrared spectroscopy

NASA Astrophysics Data System (ADS)

Amsden, Jason J.

Proteorhodopsin (PR), a newly discovered microbial rhodopsin found in marine proteobacteria, functions as a light-driven proton pump similar to bacteriorhodopsin (BR). PR-containing bacteria account for ˜13% of the microorganisms in the oceans' photic zone and are responsible for a significant fraction of the biosphere's solar energy conversion. We study the initial response of proteorhodopsin to photon absorption using a combination of low-temperature (80 K) Fourier transform infrared (FTIR) difference spectroscopy and ultrafast transient infrared (TIR) spectroscopy. Low-temperature FTIR difference spectroscopy combined with site-directed mutagenesis and isotope labeling is used to detect and characterize changes occurring in the conformation of the retinal chromophore, protein, and internal water molecules of green-absorbing PR (GPR) and blue-absorbing PR (BPR) during the initial phototransition. Measurements on cryogenically trapped intermediates do not accurately reflect all native structural changes occurring in PR and other microbial rhodopsins on ultrafast time scales at room temperature. Recent studies demonstrate that photoactive proteins such as photoactive yellow protein, myoglobin, and green-fluorescent protein, can react within several picoseconds to photon absorption by their chromophores. Faster subpicosecond protein responses have been suggested to occur in rhodopsin-like proteins where retinal chromophore photoisomerization may impulsively drive structural changes in nearby protein groups. Here, I test this possibility by investigating the earliest protein and chromophore structural changes occurring in GPR using ultrafast TIR spectroscopy with ˜200 fs time resolution combined with non-perturbing isotope labeling. On the basis of total-15N and retinal C15D (retinal with a deuterium on carbon 15) isotope labeling, the all-trans to 13-cis retinal chromophore isomerization occurs with a 500-700 fs time constant and the amide II mode of one or more peptide bonds in the protein backbone downshifts in frequency on the same 500--700 fs time scale. This downshift represents the weakening of the hydrogen bonding in one or more peptide bonds in the peptide backbone. Preliminary data on BR indicates that this amide II downshift is a universal feature in microbial rhodopsins. In addition, the protein changes we observe on a subpicosecond time-scale may be involved in storage and transfer of the absorbed photon energy subsequently utilized for proton transport.

IR Spectropolarimeter Measurements of Planetary Materials

NASA Astrophysics Data System (ADS)

Brown, A. J.; Chenault, D. B.; Goldstein, D. H.

2006-12-01

The surfaces of rocky planetary bodies are chiefly ices and silicates. These materials have primary vibrational absorption bands at around 8-12 micons due to Si-O bending (silicates) and at around 3 microns due to H2O bending vibrations (water ices). These vibrations lie in the Thermal Infrared (TIR) region of the spectrum. This region is challenging for passive remote sensing methods due to the relatively low numbers of photons of this energy being reflected or emitted by cold planetary surfaces. We have tested an active reflectance and polarization sensor in the TIR region of the spectrum to determine the utility of an active sensing system for future rover missions to the Moon, asteroids, comets and airless satellites of the outer planets. Mars is also a possible target. A variety of samples were chosen in order to get an appreciation for the breadth of reseach required to characterize materials of different albedo, specularity and roughness. Two sulfate samples, gypsum and anhydrite, were chosen due to the strong possibility sulfates are present on Europa (Dalton, 2003) and the fact that gypsum and other sulfates have been detected on Mars (eg. Langevin, et. al 2005). The two other samples - labradorite and ilmenite, are known to be present on the Moon (Crown and Pieters, 1987, Raymond and Wenk, 1971). No ices were prepared for this study since the instrument was only able to operate in ambient conditions. The instrumental apparatus we used is capable of obtaining transmission or reflectance measurements and fully describing the complete polarization state of light reflected from a target surface (Goldstein and Chenault, 2002). We used the instrument to measure the reflectance of the samples, and obtained the polarization state in the form of a Mueller matrix as a function of wavelength. The results will be reported at this workshop and we will outline the direction of future investigations. We would like to acknowledge the assistance of Dr. Christian Grund at Ball Aerospace for his assistance on this project. References Crown, D.A. and Pieters, C.M. (1987) Spectral properties of plagioclase and pyroxene mixtures and the interpretation of lunar soil spectra, Icarus 72, 492-506 Dalton, J.B. (2003) Spectral Behavior of Hydrated Sulfate Salts: Implications for Europa Mission Spectrometer Design. Astrobiology 3(4) 771-784. Goldstein, D.H. and Chenault, D.B. (2002) Spectropolarimetric reflectometer, Optical Engineering, 41(5), 1013- 1020. Langevin, Y., et al. (2005) Sulfates in the North Polar Region of Mars Detected by OMEGA/Mars Express. Science, 307 (5715), 1584-1586. Raymond, K.N. and Wenk, H.R. (1971) Lunar ilmenite (Refinement of the crystal structure). Contributions to Mineralogy and Petrology 30(2) 135-140.

Climate Change and Examples of Combined HyspIRI VSWIR/TIR Advanced Level Products for Urban Ecosystems Analysis

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.

2010-01-01

It is estimated that 60-80% of the world population will live in urban environments by the end of this century. This growth of the urban population will effect the climate. This slide presentation examines the use of combined HyspIRI Visible ShortWave Infrared (VSWIR)/Thermal Infrared (TIR) to observe, monitor, measure and model many of the components that comprise urban ecosystems cycles.

Characterizing tree canopy temperature heterogeneity using an unmanned aircraft-borne thermal imager

NASA Astrophysics Data System (ADS)

Messinger, M.; Powell, R.; Silman, M.; Wright, M.; Nicholson, W.

2013-12-01

Leaf temperature (Tleaf) is an important control on many physiological processes such as photosynthesis and respiration, is a key variable for characterizing canopy energy fluxes, and is a valuable metric for identifying plant water stress or disease. Traditional methods of Tleaf measurement involve either the use of thermocouples, a time and labor-intensive method that samples sparsely in space, or the use of air temperature (Tair) as a proxy measure, which can introduce inaccuracies due to near constant canopy-atmosphere energy flux. Thermal infrared (TIR) imagery provides an efficient means of collecting Tleaf for large areas. Existing satellite and aircraft-based TIR imagery is, however, limited by low spatial and/or temporal resolution, while crane-mounted camera systems have strictly limited spatial extents. Unmanned aerial systems (UAS) offer new opportunities to acquire high spatial and temporal resolution imagery on demand. Here, we demonstrate the feasibility of collecting tree canopy Tleaf data using a small multirotor UAS fitted with a high spatial resolution TIR imager. The goals of this pilot study were to a) characterize basic patterns of within crown Tleaf for 4 study species and b) identify trends in Tleaf between species with varying leaf morphologies and canopy structures. TIR imagery was acquired for individual tree crowns of 4 species common to the North Carolina Piedmont ecoregion (Quercus phellos, Pinus strobus, Liriodendron tulipifera, Magnolia grandiflora) in an urban park environment. Due to significantly above-average summer precipitation, we assumed that none of the sampled trees was limited by soil water availability. We flew the TIR imaging system over 3-4 individuals of each of the 4 target species on 3 separate days. Imagery of all individuals was collected within the same 2-hour period in the afternoon on all days. There was low wind and partly cloudy skies during imaging. Tair, relative humidity, and wind speed were recorded at each site. Emissivity was assumed to be 0.98 for all species. Acquired images had a pixel resolution of <3 cm and measurement accuracy of ×1° C. We found the UAS-borne TIR imaging system to be an effective tool for collection of high resolution canopy imagery. The system imaged all targeted crowns quickly and reliably, providing a viable alternative to current methods of canopy Tleaf measurement. Analysis of the imagery indicated significant variability in Tleaf both within and between crowns. We identified trends in Tleaf related to average leaf size, shape, and crown structural traits. These data on the heterogeneity of Tleaf can further our understanding of canopy-atmosphere energy exchange. This pilot study demonstrates the promise of UAS-borne TIR sensors for acquiring high spatial resolution imagery at the scale of individual tree crowns.

A plastic total internal reflection-based photoluminescence device for enzymatic biosensors

NASA Astrophysics Data System (ADS)

Thakkar, Ishan G.

Growing concerns for quality of water, food and beverages in developing and developed countries drive sizeable markets for mass-producible, low cost devices that can measure the concentration of contaminant chemicals in water, food, and beverages rapidly and accurately. Several fiber-optic enzymatic biosensors have been reported for these applications, but they exhibit very strong presence of scattered excitation light in the signal for sensing, requiring expensive thin-film filters, and their non-planar structure makes them challenging to mass-produce. Several other planar optical waveguide-based biosensors prove to be relatively costly and more fragile due to constituent materials and the techniques involved in their fabrication. So, a plastic total internal reflection (TIR)-based low cost, low scatter, field-portable device for enzymatic biosensors is fabricated and demonstrated. The design concept of the TIR-based photoluminescent enzymatic biosensor device is explained. An analysis of economical materials with appropriate optical and chemical properties is presented. PMMA and PDMS are found to be appropriate due to their high chemical resistance, low cost, high optical transmittance and low auto-fluorescence. The techniques and procedures used for device fabrication are discussed. The device incorporated a PMMA-based optical waveguide core and PDMS-based fluid cell with simple multi-mode fiber-optics using cost-effective fabrication techniques like molding and surface modification. Several techniques of robustly depositing photoluminescent dyes on PMMA core surface are discussed. A pH-sensitive fluorescent dye, fluoresceinamine, and an O2-sensitive phosphorescent dye, Ru(dpp) both are successfully deposited using Si-adhesive gel-based as well as HydroThane-based deposition methods. Two different types of pH-sensors using two different techniques of depositing fluoresceinamine are demonstrated. Also, the effect of concentration of fluoresceinamine-dye molecules on fluorescence intensity and scattered excitation light intensity is investigated. The fluorescence intensity to the scattered excitation light intensity ratio for dye deposition is found to increase with increase in concentration. However, both the absolute fluorescence intensity and absolute scatter intensity are found to decrease in different amounts with an increase in concentration. An enzymatic hydrogen peroxide (H2O2) sensor is made and demonstrated by depositing Ruthenium-based phosphorescent dye (Ru(dpp) 3) and catalase-enzyme on the surface of the waveguide core. The O 2-sensitive phosphorescence of Ru(dpp)3 is used as a transduction signal and the catalase-enzyme is used as a bio-component for sensing. The H2O2 sensor exhibits a phosphorescence signal to scattered excitation light ratio of 100+/-18 without filtering. The unfiltered device demonstrates a detection limit of (2.20+/-0.6) microM with the linear range from 200microM to 20mM. An enzymatic lactose sensor is designed and characterized using Si-adhesive gel based Ru(dpp)3 deposition and oxidase enzyme. The lactose sensor exhibits the linear range of up to 0.8mM, which is too small for its application in industrial process control. So, a flow cell-based sensor device with a fluid reservoir is proposed and fabricated to increase the linear range of the sensor. Also, a multi-channel pH-sensor device with four channels is designed and fabricated for simultaneous sensing of multiple analytes.

Assessment of a landfill methane emission screening method using an unmanned aerial vehicle mounted thermal infrared camera - A field study.

PubMed

Fjelsted, L; Christensen, A G; Larsen, J E; Kjeldsen, P; Scheutz, C

2018-05-28

An unmanned aerial vehicle (UAV)-mounted thermal infrared (TIR) camera's ability to delineate landfill gas (LFG) emission hotspots was evaluated in a field test at two Danish landfills (Hedeland landfill and Audebo landfill). At both sites, a test area of 100 m 2 was established and divided into about 100 measuring points. The relationship between LFG emissions and soil surface temperatures were investigated through four to five measuring campaigns, in order to cover different atmospheric conditions along with increasing, decreasing and stable barometric pressure. For each measuring campaign, a TIR image of the test area was obtained followed by the measurement of methane (CH 4 ) and carbon dioxide (CO 2 ) emissions at each measuring point, using a static flux chamber. At the same time, soil temperatures measured on the surface, at 5 cm and 10 cm depths, were registered. At the Hedeland landfill, no relationship was found between LFG emissions and surface temperatures. In addition, CH 4 emissions were very limited, on average 0.92-4.52 g CH 4  m -2  d -1 , and only measureable on the two days with decreasing barometric pressure. TIR images from Hedeland did not show any significant temperature differences in the test area. At the Audebo landfill, an area with slightly higher surface temperatures was found in the TIR images, and the same pattern with slightly higher temperatures was found at a depth of 10 cm. The main LFG emissions were found in the area with the higher surface temperatures. LFG emissions at Audebo were influenced significantly by changes in barometric pressure, and the average CH 4 emissions varied between 111 g m -2  d -1 and 314 g m -2  d -1 , depending on whether the barometric pressure gradient had increased or decreased, respectively. The temperature differences observed in the TIR images from both landfills were limited to between 0.7 °C and 1.2 °C. The minimum observable CH 4 emission for the TIR camera to identify an emission hotspot was 150 g CH 4  m -2  d -1 from an area of more than 1 m 2 . Copyright © 2018 Elsevier Ltd. All rights reserved.

Landsat-8 TIRS thermal radiometric calibration status

USGS Publications Warehouse

Barsi, Julia A.; Markham, Brian L.; Montanaro, Matthew; Gerace, Aaron; Hook, Simon; Schott, John R.; Raqueno, Nina G.; Morfitt, Ron

2017-01-01

The Thermal Infrared Sensor (TIRS) instrument is the thermal-band imager on the Landsat-8 platform. The initial onorbit calibration estimates of the two TIRS spectral bands indicated large average radiometric calibration errors, -0.29 and -0.51 W/m2 sr μm or -2.1K and -4.4K at 300K in Bands 10 and 11, respectively, as well as high variability in the errors, 0.87K and 1.67K (1-σ), respectively. The average error was corrected in operational processing in January 2014, though, this adjustment did not improve the variability. The source of the variability was determined to be stray light from far outside the field of view of the telescope. An algorithm for modeling the stray light effect was developed and implemented in the Landsat-8 processing system in February 2017. The new process has improved the overall calibration of the two TIRS bands, reducing the residual variability in the calibration from 0.87K to 0.51K at 300K for Band 10 and from 1.67K to 0.84K at 300K for Band 11. There are residual average lifetime bias errors in each band: 0.04 W/m2 sr μm (0.30K) and -0.04 W/m2 sr μm (-0.29K), for Bands 10 and 11, respectively.

Assembly of Landsat's TIRS Instrument

NASA Image and Video Library

2017-12-08

Pete Steigner, and Mike Golob (middle and right) assist an Chris Kolos in carefully moving a TIRS component across the clean room at Goddard. On the far right Robin Knight holds the component's 'grounding strap.' It's used to make sure that any static electricity that could possibly build up while the component is being moved doesn't affect the damage the sensitive electronics. The Thermal Infrared Sensor (TIRS) will fly on the next Landsat satellite, the Landsat Data Continuity Mission (LDCM). TIRS was built on an accelerated schedule at NASA's Goddard Space Flight Center, Greenbelt, Md. and will now be integrated into the LDCM spacecraft at Orbital Science Corp. in Gilbert, Ariz. The Landsat Program is a series of Earth observing satellite missions jointly managed by NASA and the U.S. Geological Survey. Landsat satellites have been consistently gathering data about our planet since 1972. They continue to improve and expand this unparalleled record of Earth's changing landscapes for the benefit of all. For more information on Landsat, visit: www.nasa.gov/landsat Credit: NASA/GSFC/Rebecca Roth NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Exploring the limits of identifying sub-pixel thermal features using ASTER TIR data

USGS Publications Warehouse

Vaughan, R.G.; Keszthelyi, L.P.; Davies, A.G.; Schneider, D.J.; Jaworowski, C.; Heasler, H.

2010-01-01

Understanding the characteristics of volcanic thermal emissions and how they change with time is important for forecasting and monitoring volcanic activity and potential hazards. Satellite instruments view volcanic thermal features across the globe at various temporal and spatial resolutions. Thermal features that may be a precursor to a major eruption, or indicative of important changes in an on-going eruption can be subtle, making them challenging to reliably identify with satellite instruments. The goal of this study was to explore the limits of the types and magnitudes of thermal anomalies that could be detected using satellite thermal infrared (TIR) data. Specifically, the characterization of sub-pixel thermal features with a wide range of temperatures is considered using ASTER multispectral TIR data. First, theoretical calculations were made to define a "thermal mixing detection threshold" for ASTER, which quantifies the limits of ASTER's ability to resolve sub-pixel thermal mixing over a range of hot target temperatures and % pixel areas. Then, ASTER TIR data were used to model sub-pixel thermal features at the Yellowstone National Park geothermal area (hot spring pools with temperatures from 40 to 90 ??C) and at Mount Erebus Volcano, Antarctica (an active lava lake with temperatures from 200 to 800 ??C). Finally, various sources of uncertainty in sub-pixel thermal calculations were quantified for these empirical measurements, including pixel resampling, atmospheric correction, and background temperature and emissivity assumptions.

Thermal infrared remote sensing in assessing groundwater and surface-water resources related to Hannukainen mining development site, northern Finland

NASA Astrophysics Data System (ADS)

Rautio, Anne B.; Korkka-Niemi, Kirsti I.; Salonen, Veli-Pekka

2018-02-01

Mining development sites occasionally host complicated aquifer systems with notable connections to natural surface water (SW) bodies. A low-altitude thermal infrared (TIR) imaging survey was conducted to identify hydraulic connections between aquifers and rivers and to map spatial surface temperature patterns along the subarctic rivers in the proximity of the Hannukainen mining development area, northern Finland. In addition to TIR data, stable isotopic compositions ( δ 18O, δD) and dissolved silica concentrations were used as tracers to verify the observed groundwater (GW) discharge into the river system. Based on the TIR survey, notable GW discharge into the main river channel and its tributaries (61 km altogether) was observed and over 500 GW discharge sites were located. On the basis of the survey, the longitudinal temperature patterns of the studied rivers were found to be highly variable. Hydrological and hydrogeological information is crucial in planning and siting essential mining operations, such as tailing areas, in order to prevent any undesirable environmental impacts. The observed notable GW discharge was taken into consideration in the planning of the Hannukainen mining development area. The results of this study support the use of TIR imagery in GW-SW interaction and environmental studies in extensive and remote areas with special concerns for water-related issues but lacking the baseline research.

Monitoring eruptive activity at Mount St. Helens with TIR image data

USGS Publications Warehouse

Vaughan, R.G.; Hook, S.J.; Ramsey, M.S.; Realmuto, V.J.; Schneider, D.J.

2005-01-01

Thermal infrared (TIR) data from the MASTER airborne imaging spectrometer were acquired over Mount St. Helens in Sept and Oct, 2004, before and after the onset of recent eruptive activity. Pre-eruption data showed no measurable increase in surface temperatures before the first phreatic eruption on Oct 1. MASTER data acquired during the initial eruptive episode on Oct 14 showed maximum temperatures of ???330??C and TIR data acquired concurrently from a Forward Looking Infrared (FLIR) camera showed maximum temperatures ???675??C, in narrow (???1-m) fractures of molten rock on a new resurgent dome. MASTER and FLIR thermal flux calculations indicated a radiative cooling rate of ???714 J/m2/S over the new dome, corresponding to a radiant power of ???24 MW. MASTER data indicated the new dome was dacitic in composition, and digital elevation data derived from LIDAR acquired concurrently with MASTER showed that the dome growth correlated with the areas of elevated temperatures. Low SO2 concentrations in the plume combined with sub-optimal viewing conditions prohibited quantitative measurement of plume SO2. The results demonstrate that airborne TIR data can provide information on the temperature of both the surface and plume and the composition of new lava during eruptive episodes. Given sufficient resources, the airborne instrumentation could be deployed rapidly to a newly-awakening volcano and provide a means for remote volcano monitoring. Copyright 2005 by the American Geophysical Union.

Robust Satellite Techniques (RST) for monitoring earthquake prone areas by satellite TIR observations: The case of 1999 Chi-Chi earthquake (Taiwan)

NASA Astrophysics Data System (ADS)

Genzano, N.; Filizzola, C.; Paciello, R.; Pergola, N.; Tramutoli, V.

2015-12-01

For more than 13 years a multi-temporal data-analysis method, named Robust Satellite Techniques (RST), has been being applied to satellite Thermal InfraRed (TIR) monitoring of seismically active regions. It gives a clear definition of a TIR anomaly within a validation/confutation scheme devoted to verify if detected anomalies can be associated or not to the time and location of the occurrence of major earthquakes. In this scheme, the confutation part (i.e. verifying if similar anomalies do not occur in the absence of a significant seismic activity) assumes a role even much important than the usual validation component devoted to verify the presence of anomalous signal transients before (or in association with) specific seismic events. Since 2001, RST approach has been being used to study tens of earthquakes with a wide range of magnitudes (from 4.0 to 7.9) occurred in different continents and in various geo-tectonic settings. In this paper such a long term experience is exploited in order to give a quantitative definition of a significant sequence of TIR anomalies (SSTA) in terms of the required space-time continuity constraints (persistence), identifying also the different typologies of known spurious sequences of TIR anomalies that have to be excluded from the following validation steps. On the same basis, taking also into account for the physical models proposed for justifying the existence of a correlation between TIR anomalies and earthquakes occurrence, specific validation rules (in line with the ones used by the Collaboratory for the Study of Earthquake Predictability - CSEP - Project) have been defined to drive the validation process. In this work, such an approach is applied for the first time to a long-term dataset of night-time GMS-5/VISSR (Geostationary Meteorological Satellite/Visible and Infrared Spin-Scan Radiometer) TIR measurements, comparing SSTAs and earthquakes with M > 4 which occurred in a wide area around Taiwan, in the month of September of different years (from 1995 to 2002). In this dataset the Chi-Chi earthquake (MW = 7.6) which occurred on September 20, 1999 represents the major, but not unique, event. The analysis shows that all identified SSTAs occur in the pre-fixed space-time window around (in terms of time and location) earthquakes with M > 4. The false positive rate remains zero even if only earthquakes with M > 4.5 are considered. In the case of the Chi-Chi earthquake, 3 SSTAs were identified (all within the established space-time correlation window), one of them appearing about 2 weeks before and very close to the epicentre of the earthquake just along the associated tectonic lineaments. The wide considered space-time window, together with the high seismicity of the considered area, surely positively conditioned the achieved results, so that further analyses should be carried out by using longer datasets and different geographic areas. However, also considering the coincidence with other (possible) precursor phenomena, independently reported (particularly within the iSTEP project) at the time of the Chi Chi earthquake, achieved results seem already sufficient (at least) to qualify TIR anomalies (identified by RST) among the parameters to be considered in the framework of a multi-parametric approach to a time-Dependent Assessment of Seismic Hazard (t-DASH).

Genome-Wide Comparative Analysis Reveals Similar Types of NBS Genes in Hybrid Citrus sinensis Genome and Original Citrus clementine Genome and Provides New Insights into Non-TIR NBS Genes

PubMed Central

Wang, Yunsheng; Zhou, Lijuan; Li, Dazhi; Dai, Liangying; Lawton-Rauh, Amy; Srimani, Pradip K.; Duan, Yongping; Luo, Feng

2015-01-01

In this study, we identified and compared nucleotide-binding site (NBS) domain-containing genes from three Citrus genomes (C. clementina, C. sinensis from USA and C. sinensis from China). Phylogenetic analysis of all Citrus NBS genes across these three genomes revealed that there are three approximately evenly numbered groups: one group contains the Toll-Interleukin receptor (TIR) domain and two different Non-TIR groups in which most of proteins contain the Coiled Coil (CC) domain. Motif analysis confirmed that the two groups of CC-containing NBS genes are from different evolutionary origins. We partitioned NBS genes into clades using NBS domain sequence distances and found most clades include NBS genes from all three Citrus genomes. This suggests that three Citrus genomes have similar numbers and types of NBS genes. We also mapped the re-sequenced reads of three pomelo and three mandarin genomes onto the C. sinensis genome. We found that most NBS genes of the hybrid C. sinensis genome have corresponding homologous genes in both pomelo and mandarin genomes. The homologous NBS genes in pomelo and mandarin suggest that the parental species of C. sinensis may contain similar types of NBS genes. This explains why the hybrid C. sinensis and original C. clementina have similar types of NBS genes in this study. Furthermore, we found that sequence variation amongst Citrus NBS genes were shaped by multiple independent and shared accelerated mutation accumulation events among different groups of NBS genes and in different Citrus genomes. Our comparative analyses yield valuable insight into the structure, organization and evolution of NBS genes in Citrus genomes. Furthermore, our comprehensive analysis showed that the non-TIR NBS genes can be divided into two groups that come from different evolutionary origins. This provides new insights into non-TIR genes, which have not received much attention. PMID:25811466

Genome-wide comparative analysis reveals similar types of NBS genes in hybrid Citrus sinensis genome and original Citrus clementine genome and provides new insights into non-TIR NBS genes.

PubMed

Wang, Yunsheng; Zhou, Lijuan; Li, Dazhi; Dai, Liangying; Lawton-Rauh, Amy; Srimani, Pradip K; Duan, Yongping; Luo, Feng

2015-01-01

In this study, we identified and compared nucleotide-binding site (NBS) domain-containing genes from three Citrus genomes (C. clementina, C. sinensis from USA and C. sinensis from China). Phylogenetic analysis of all Citrus NBS genes across these three genomes revealed that there are three approximately evenly numbered groups: one group contains the Toll-Interleukin receptor (TIR) domain and two different Non-TIR groups in which most of proteins contain the Coiled Coil (CC) domain. Motif analysis confirmed that the two groups of CC-containing NBS genes are from different evolutionary origins. We partitioned NBS genes into clades using NBS domain sequence distances and found most clades include NBS genes from all three Citrus genomes. This suggests that three Citrus genomes have similar numbers and types of NBS genes. We also mapped the re-sequenced reads of three pomelo and three mandarin genomes onto the C. sinensis genome. We found that most NBS genes of the hybrid C. sinensis genome have corresponding homologous genes in both pomelo and mandarin genomes. The homologous NBS genes in pomelo and mandarin suggest that the parental species of C. sinensis may contain similar types of NBS genes. This explains why the hybrid C. sinensis and original C. clementina have similar types of NBS genes in this study. Furthermore, we found that sequence variation amongst Citrus NBS genes were shaped by multiple independent and shared accelerated mutation accumulation events among different groups of NBS genes and in different Citrus genomes. Our comparative analyses yield valuable insight into the structure, organization and evolution of NBS genes in Citrus genomes. Furthermore, our comprehensive analysis showed that the non-TIR NBS genes can be divided into two groups that come from different evolutionary origins. This provides new insights into non-TIR genes, which have not received much attention.

A Satellite-Based Imaging Instrumentation Concept for Hyperspectral Thermal Remote Sensing

PubMed Central

Udelhoven, Thomas; Schlerf, Martin; Segl, Karl; Mallick, Kaniska; Bossung, Christian; Rock, Gilles; Fischer, Peter; Müller, Andreas; Storch, Tobias; Eisele, Andreas; Weise, Dennis; Hupfer, Werner; Knigge, Thiemo

2017-01-01

This paper describes the concept of the hyperspectral Earth-observing thermal infrared (TIR) satellite mission HiTeSEM (High-resolution Temperature and Spectral Emissivity Mapping). The scientific goal is to measure specific key variables from the biosphere, hydrosphere, pedosphere, and geosphere related to two global problems of significant societal relevance: food security and human health. The key variables comprise land and sea surface radiation temperature and emissivity, surface moisture, thermal inertia, evapotranspiration, soil minerals and grain size components, soil organic carbon, plant physiological variables, and heat fluxes. The retrieval of this information requires a TIR imaging system with adequate spatial and spectral resolutions and with day-night following observation capability. Another challenge is the monitoring of temporally high dynamic features like energy fluxes, which require adequate revisit time. The suggested solution is a sensor pointing concept to allow high revisit times for selected target regions (1–5 days at off-nadir). At the same time, global observations in the nadir direction are guaranteed with a lower temporal repeat cycle (>1 month). To account for the demand of a high spatial resolution for complex targets, it is suggested to combine in one optic (1) a hyperspectral TIR system with ~75 bands at 7.2–12.5 µm (instrument NEDT 0.05 K–0.1 K) and a ground sampling distance (GSD) of 60 m, and (2) a panchromatic high-resolution TIR-imager with two channels (8.0–10.25 µm and 10.25–12.5 µm) and a GSD of 20 m. The identified science case requires a good correlation of the instrument orbit with Sentinel-2 (maximum delay of 1–3 days) to combine data from the visible and near infrared (VNIR), the shortwave infrared (SWIR) and TIR spectral regions and to refine parameter retrieval. PMID:28671575

Targeting Toll-like receptor (TLR) signaling by Toll/interleukin-1 receptor (TIR) domain-containing adapter protein/MyD88 adapter-like (TIRAP/Mal)-derived decoy peptides.

PubMed

Couture, Leah A; Piao, Wenji; Ru, Lisa W; Vogel, Stefanie N; Toshchakov, Vladimir Y

2012-07-13

Toll/interleukin-1 receptor (TIR) domain-containing adapter protein/MyD88 adapter-like (TIRAP/Mal) is an adapter protein that facilitates recruitment of MyD88 to TLR4 and TLR2 signaling complexes. We previously generated a library of cell-permeating TLR4 TIR-derived decoy peptides fused to the translocating segment of the Drosophila Antennapedia homeodomain and examined each peptide for the ability to inhibit TLR4 signaling (Toshchakov, V. Y., Szmacinski, H., Couture, L. A., Lakowicz, J. R., and Vogel, S. N. (2011) J. Immunol. 186, 4819-4827). We have now expanded this study to test TIRAP decoy peptides. Five TIRAP peptides, TR3 (for TIRAP region 3), TR5, TR6, TR9, and TR11, inhibited LPS-induced cytokine mRNA expression and MAPK activation. Inhibition was confirmed at the protein level; select peptides abolished the LPS-induced cytokine production measured in cell culture 24 h after a single treatment. Two of the TLR4 inhibitory peptides, TR3 and TR6, also inhibited cytokine production induced by a TLR2/TLR1 agonist, S-(2,3-bis(palmitoyloxy)-(2R,2S)-propyl)-N-palmitoyl-(R)-Cys-Ser-Lys(4)-OH; however, a higher peptide concentration was required to achieve comparable inhibition of TLR2 versus TLR4 signaling. Two TLR4 inhibitory peptides, TR5 and TR6, were examined for the ability to inhibit TLR4-driven cytokine induction in mice. Pretreatment with either peptide significantly reduced circulating TNF-α and IL-6 in mice following LPS injection. This study has identified novel TLR inhibitory peptides that block cellular signaling at low micromolar concentrations in vitro and in vivo. Comparison of TLR4 inhibition by TLR4 and TIRAP TIR-derived peptides supports the view that structurally diverse regions mediate functional interactions of TIR domains.

Impacts of Advection Fog on the Surface Radiation Budget in coastal California

NASA Astrophysics Data System (ADS)

Oliphant, A. J.; Baguskas, S. A.

2016-12-01

Clouds and other aerosols alter the nature of the surface radiation budget (SRB) by reducing the quantity and changing the quality of solar radiation incident upon the surface as well as enhancing down-welling thermal infrared radiation (TIR) and suppressing upwelling TIR during daytime. Our study aimed to characterize the impact of advection fog on SRB components in coastal California, and develop methods to identify and characterize fog events using surface-mounted radiometers. First, we generated a climatology of summertime SRB components based on observations from south-western San Francisco, CA (2005-2008). From this we drew clear distinctions in characteristic surface radiation regimes between foggy and clear-sky days using atmospheric transmission indices during the day and down-welling TIR at any time of day. Secondly, we applied these empirical models to a dataset gathered in 2016 on a coastal strawberry farm located in the fog-belt in the Salinas Valley, California. From this we investigated methods to improve the models to distinguish fog events that cause surface deposition from those when the stratocumulus deck is slightly elevated, i.e., overcast conditions. On average, coastal fog was found to decrease incident solar radiation by about 50% and increase the diffuse fraction by 81%. There was a mean difference of about 70 W m-2 in down-welling TIR between clear-sky and foggy conditions throughout the diurnal cycle, with a standard deviation of less than 10 W m-2, which allows robust 24-hr estimates of fog presence using simple thresholds. As the cloud base lowers in elevation during fog events, the differences in temperature between the cloud base and surface is reduced; therefore, the ratio of opposing TIR fluxes is related to cloud base heights and should help disentangle `fog' events to better inform environmental drivers of coastal ecosystems.

The Coast Artillery Journal. Volume 59, Number 6, December 1923

DTIC Science & Technology

1923-12-01

Remarques sur Ie tir Fusant.-F-12, January, 1923. RegIa de Calculo Para Muelles Cilindricos.-Spa-2, June, 1923. Terrain Reduit pour Exercices de tir Fictif au...I to V, on a front Brussels-Metz, pivoting on the fortified area Metz- Thionville. The inner flank of the wheel was to be covered by the VI and VII...rapidly on the fron t Beauraing-Gedinne- Paliseul- Fay- des -Veneurs-Cuignon (5th Army) and Tetaigne-Margut-Quincy (4th Army)." Fearing the German advance

The Thermal Infrared Sensor on the Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Reuter, Dennis; Richardson, Cathy; Irons, James; Allen, Rick; Anderson, Martha; Budinoff, Jason; Casto, Gordon; Coltharp, Craig; Finneran, Paul; Forsbacka, Betsy;

Modelling the Thermal and Infrared Spectral Properties of Active Vents: Comparing Basaltic Lava Flows of Tolbachik, Russia to Arsia Mons, Mars

NASA Astrophysics Data System (ADS)

Ramsey, M. S.; Harris, A. J. L.

2016-12-01

Satellite observations of active vents commonly group into several broad categories: thermal analysis, deformational studies, and gas/ash detection. These observations become increasingly detailed depending on the spatial, spectral and/or temporal resolution of the sensor. Higher temporal resolution thermal infrared (TIR) data are used to determine the time-averaged discharge rate (TADR) and the potential down-slope inundation of the newly-forming flow using thermorheologic-based modelling. Whereas, increased spectral resolution leads to improved measurement of the flow's composition, crystal content, and vesicularity. Combined, these data help to improve the accuracy of cooling-based viscosity models such as FLOWGO. In addition to topography, the dominant (internal) factors controlling flow propagation are the discharge rate combined with cooling and increasing viscosity. The cooling of the glassy lava surface is directly imaged by the TIR instrument to determine temperature, which is then used to calculate the model's starting conditions. Understanding the cooling, formation and dynamics of basaltic surfaces therefore helps to resolve compositional, textural, and silicate structural changes. Models, coupled with accurate knowledge of the characteristics of older, inactive flows (such as those on Mars), can be reversed to predict the vent conditions at the time of the eruption. Being able to directly connect the final flow morphology to specific eruption conditions is a critical goal to understand the last stages of volcanism on Mars and becomes an important educational tool where combined with 3D visualization. The 2012-2013 eruption of Tolbachik volcano, Russia was the largest and most thermally intense flow-forming eruption in the past 50 years, producing longer lava flows than that of a typical eruption at Kilauea or Etna. These flows have been studied using various scales of TIR data at the time of eruption and following cooling. The input parameters for the FLOWGO model are then tuned to produce the best fit of eruptive conditions to final flow morphology. The refined model can then be used to determine the TADR from the vent and make improved estimates of cooling, viscosity, velocity and crystallinity with distance. Final results are visualized and their educational potential assessed.

Allophane on Mars: Evidence from IR Spectroscopy and TES Spectral Models

NASA Technical Reports Server (NTRS)

Ming, Douglas W.; Rampe, E. B.; Kraft, M. D.; Sharp. T. G.; Golden, D. C.; Christensen, P. C.

2010-01-01

Allophane is an alteration product of volcanic glass and a clay mineral precursor that is commonly found in basaltic soils on Earth. It is a poorly-crystalline or amorphous, hydrous aluminosilicate with Si/Al ratios ranging from approx.0.5-1 [Wada, 1989]. Analyses of thermal infrared (TIR) spectra of the Martian surface from TES show high-silica phases at mid-to-high latitudes that have been proposed to be primary volcanic glass [Bandfield et al., 2000; Bandfield, 2002; Rogers and Christensen, 2007] or poorly-crystalline secondary silicates such as allophane or aluminous amorphous silica [Kraft et al., 2003; Michalski et al., 2006; Rogers and Christensen, 2007; Kraft, 2009]. Phase modeling of chemical data from the APXS on the Mars Exploration Rover Spirit suggest the presence of allophane in chemically weathered rocks [Ming et al., 2006]. The presence of allophane on Mars has not been previously tested with IR spectroscopy because allophane spectra have not been available. We synthesized allophanes and allophanic gels with a range of Si/Al ratios to measure TIR emission and VNIR reflectance spectra and to test for the presence of allophane in Martian soils. VNIR reflectance spectra of the synthetic allophane samples have broad absorptions near 1.4 m from OH stretching overtones and 1.9 m from a combination of stretching and bending vibrations in H2O. Samples have a broad absorption centered near 2.25 microns, from AlAlOH combination bending and stretching vibrations, that shifts position with Si/Al ratio. Amorphous silica (opaline silica or primary volcanic glass) has been identified in CRISM spectra of southern highland terrains based on the presence of 1.4, 1.9, and broad 2.25 m absorptions [Mustard et al., 2008]; however, these absorptions are also consistent with the presence of allophane. TIR emission spectra of the synthetic allophanes show two spectrally distinct types: Si-rich and Al-rich. Si-rich allophanes have two broad absorptions centered near 1080 and 430 cm-1 from Si(Al)-O stretching and Si(Al)-O bending vibrations, respectively, and Al-rich allophanes have three broad absorptions centered near 950, 540, and 430 cm-1. We used a spectral library commonly used to deconvolve TES spectra and four allophane spectra to model nine spectrally distinct regions on Mars [from Rogers et al., 2007]. Regions previously modeled with high-silica phases contain significant amounts of allophane (>10 vol.%) in our models. Our models of northern Acidalia, the type locality for surface type 2 materials, contain 40 vol.% Si-rich allophane. The presence of allophane in multiple surface regions of Mars indicates a more widespread occurrence of low-temperature aqueous alteration at moderate pH than has been previously recognized. The regional variations in modeled abundances and the types of allophane (Si- vs. Al-rich) suggest regional differences in Mars weathering processes.

Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector

PubMed Central

Caplan, Jeffrey L.; Mamillapalli, Padmavathi; Burch-Smith, Tessa M.; Czymmek, Kirk; Dinesh-Kumar, S.P.

2008-01-01

Summary Plant innate immunity relies on the recognition of pathogen effector molecules by nucleotide-binding-leucine-rich repeat (NB-LRR) immune receptor families. Previously we have shown the N immune receptor, a member of TIR-NB-LRR family, indirectly recognizes the 50-kDa helicase (p50) domain of Tobacco mosaic virus (TMV) through its TIR domain. We have identified an N receptor-interacting protein, NRIP1, that directly interacts with both N's TIR domain and p50. NRIP1 is a functional rhodanese sulfurtransferase and is required for N to provide complete resistance to TMV. Interestingly, NRIP1 that normally localizes to the chloroplasts is recruited to the cytoplasm and nucleus by the p50 effector. As a consequence, NRIP1 interacts with N only in the presence of the p50 effector. Our findings show that a chloroplastic protein is intimately involved in pathogen recognition. We propose that N's activation requires a pre-recognition complex containing the p50 effector and NRIP1. PMID:18267075

Arabidopsis EDS1 connects pathogen effector recognition to cell compartment-specific immune responses.

PubMed

Heidrich, Katharina; Wirthmueller, Lennart; Tasset, Céline; Pouzet, Cécile; Deslandes, Laurent; Parker, Jane E

2011-12-09

Pathogen effectors are intercepted by plant intracellular nucleotide binding-leucine-rich repeat (NB-LRR) receptors. However, processes linking receptor activation to downstream defenses remain obscure. Nucleo-cytoplasmic basal resistance regulator EDS1 (ENHANCED DISEASE SUSCEPTIBILITY1) is indispensible for immunity mediated by TIR (Toll-interleukin-1 receptor)-NB-LRR receptors. We show that Arabidopsis EDS1 molecularly connects TIR-NB-LRR disease resistance protein RPS4 recognition of bacterial effector AvrRps4 to defense pathways. RPS4-EDS1 and AvrRps4-EDS1 complexes are detected inside nuclei of living tobacco cells after transient coexpression and in Arabidopsis soluble leaf extracts after resistance activation. Forced AvrRps4 localization to the host cytoplasm or nucleus reveals cell compartment-specific RPS4-EDS1 defense branches. Although nuclear processes restrict bacterial growth, programmed cell death and transcriptional resistance reinforcement require nucleo-cytoplasmic coordination. Thus, EDS1 behaves as an effector target and activated TIR-NB-LRR signal transducer for defenses across cell compartments.

Monitoring Eruptive Activity at Mount St. Helens with TIR Image Data

NASA Technical Reports Server (NTRS)

Vaughan, R. G.; Hook, S. J.; Ramsey, M. S.; Realmuto, V. J.; Schneider, D. J.

2005-01-01

Thermal infrared (TIR) data from the MASTER airborne imaging spectrometer were acquired over Mount St. Helens in Sept and Oct, 2004, before and after the onset of recent eruptive activity. Pre-eruption data showed no measurable increase in surface temperatures before the first phreatic eruption on Oct 1. MASTER data acquired during the initial eruptive episode on Oct 14 showed maximum temperatures of similar to approximately 330 C and TIR data acquired concurrently from a Forward Looking Infrared (FLIR) camera showed maximum temperatures similar to approximately 675 C, in narrow (approximately 1-m) fractures of molten rock on a new resurgent dome. MASTER and FLIR thermal flux calculations indicated a radiative cooling rate of approximately 714 J/m(exp 2)/s over the new dome, corresponding to a radiant power of approximately 24 MW. MASTER data indicated the new dome was dacitic in composition, and digital elevation data derived from LIDAR acquired concurrently with MASTER showed that the dome growth correlated with the areas of elevated temperatures. Low SO2 concentrations in the plume combined with sub-optimal viewing conditions prohibited quantitative measurement of plume SO2. The results demonstrate that airborne TIR data can provide information on the temperature of both the surface and plume and the composition of new lava during eruptive episodes. Given sufficient resources, the airborne instrumentation could be deployed rapidly to a newly-awakening volcano and provide a means for remote volcano monitoring.

Cargo-mediated regulation of a rapid Rab4-dependent recycling pathway.

PubMed

Yudowski, Guillermo A; Puthenveedu, Manojkumar A; Henry, Anastasia G; von Zastrow, Mark

2009-06-01

Membrane trafficking is well known to regulate receptor-mediated signaling processes, but less is known about whether signaling receptors conversely regulate the membrane trafficking machinery. We investigated this question by focusing on the beta-2 adrenergic receptor (B2AR), a G protein-coupled receptor whose cellular signaling activity is controlled by ligand-induced endocytosis followed by recycling. We used total internal reflection fluorescence microscopy (TIR-FM) and tagging with a pH-sensitive GFP variant to image discrete membrane trafficking events mediating B2AR endo- and exocytosis. Within several minutes after initiating rapid endocytosis of B2ARs by the adrenergic agonist isoproterenol, we observed bright "puffs" of locally increased surface fluorescence intensity representing discrete Rab4-dependent recycling events. These events reached a constant frequency in the continuous presence of isoproterenol, and agonist removal produced a rapid (observed within 1 min) and pronounced (approximately twofold) increase in recycling event frequency. This regulation required receptor signaling via the cAMP-dependent protein kinase (PKA) and a specific PKA consensus site located in the carboxyl-terminal cytoplasmic tail of the B2AR itself. B2AR-mediated regulation was not restricted to this membrane cargo, however, as transferrin receptors packaged in the same population of recycling vesicles were similarly affected. In contrast, net recycling measured over a longer time interval (10 to 30 min) was not detectably regulated by B2AR signaling. These results identify rapid regulation of a specific recycling pathway by a signaling receptor cargo.

The joint methane profiles retrieval approach from GOSAT TIR and SWIR spectra

NASA Astrophysics Data System (ADS)

Zadvornykh, Ilya V.; Gribanov, Konstantin G.; Zakharov, Vyacheslav I.; Imasu, Ryoichi

2017-11-01

In this paper we present a method, using methane as example, which allows more accurate greenhouse gases retrieval in the Earth's atmosphere. Using the new version of the FIRE-ARMS software, supplemented with the VLIDORT vector radiation transfer model, we carried out joint methane retrieval from TIR (Thermal Infrared Range) and SWIR (ShortWavelength Infrared Range) GOSAT spectra using optimal estimation method. MACC reanalysis data from the European Center for Medium-Range Forecasts (ECMWF), supplemented by data from aircraft measurements of the HIPPO experiment were used as a statistical ensemble.

The difference between laboratory and in-situ pixel-averaged emissivity: The effects on temperature-emissivity separation

NASA Technical Reports Server (NTRS)

Matsunaga, Tsuneo

1993-01-01

Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is a Japanese future imaging sensor which has five channels in thermal infrared (TIR) region. To extract spectral emissivity information from ASTER and/or TIMS data, various temperature-emissivity (T-E) separation methods have been developed to date. Most of them require assumptions on surface emissivity, in which emissivity measured in a laboratory is often used instead of in-situ pixel-averaged emissivity. But if these two emissivities are different, accuracies of separated emissivity and surface temperature are reduced. In this study, the difference between laboratory and in-situ pixel-averaged emissivity and its effect on T-E separation are discussed. TIMS data of an area containing both rocks and vegetation were also processed to retrieve emissivity spectra using two T-E separation methods.

Vertical profile of tropospheric ozone derived from synergetic retrieval using three different wavelength ranges, UV, IR, and microwave: sensitivity study for satellite observation

NASA Astrophysics Data System (ADS)

Sato, Tomohiro O.; Sato, Takao M.; Sagawa, Hideo; Noguchi, Katsuyuki; Saitoh, Naoko; Irie, Hitoshi; Kita, Kazuyuki; Mahani, Mona E.; Zettsu, Koji; Imasu, Ryoichi; Hayashida, Sachiko; Kasai, Yasuko

2018-03-01

We performed a feasibility study of constraining the vertical profile of the tropospheric ozone by using a synergetic retrieval method on multiple spectra, i.e., ultraviolet (UV), thermal infrared (TIR), and microwave (MW) ranges, measured from space. This work provides, for the first time, a quantitative evaluation of the retrieval sensitivity of the tropospheric ozone by adding the MW measurement to the UV and TIR measurements. Two observation points in East Asia (one in an urban area and one in an ocean area) and two observation times (one during summer and one during winter) were assumed. Geometry of line of sight was nadir down-looking for the UV and TIR measurements, and limb sounding for the MW measurement. The retrieval sensitivities of the ozone profiles in the upper troposphere (UT), middle troposphere (MT), and lowermost troposphere (LMT) were estimated using the degree of freedom for signal (DFS), the pressure of maximum sensitivity, reduction rate of error from the a priori error, and the averaging kernel matrix, derived based on the optimal estimation method. The measurement noise levels were assumed to be the same as those for currently available instruments. The weighting functions for the UV, TIR, and MW ranges were calculated using the SCIATRAN radiative transfer model, the Line-By-Line Radiative Transfer Model (LBLRTM), and the Advanced Model for Atmospheric Terahertz Radiation Analysis and Simulation (AMATERASU), respectively. The DFS value was increased by approximately 96, 23, and 30 % by adding the MW measurements to the combination of UV and TIR measurements in the UT, MT, and LMT regions, respectively. The MW measurement increased the DFS value of the LMT ozone; nevertheless, the MW measurement alone has no sensitivity to the LMT ozone. The pressure of maximum sensitivity value for the LMT ozone was also increased by adding the MW measurement. These findings indicate that better information on LMT ozone can be obtained by adding constraints on the UT and MT ozone from the MW measurement. The results of this study are applicable to the upcoming air-quality monitoring missions, APOLLO, GMAP-Asia, and uvSCOPE.

Landsat 7 thermal-IR image sharpening using an artificial neural network and sensor model

USGS Publications Warehouse

Lemeshewsky, G.P.; Schowengerdt, R.A.; ,

2001-01-01

The enhanced thematic mapper (plus) (ETM+) instrument on Landsat 7 shares the same basic design as the TM sensors on Landsats 4 and 5, with some significant improvements. In common are six multispectral bands with a 30-m ground-projected instantaneous field of view (GIFOV). However, the thermaL-IR (TIR) band now has a 60-m GIFOV, instead of 120-m. Also, a 15-m panchromatic band has been added. The artificial neural network (NN) image sharpening method described here uses data from the higher spatial resolution ETM+ bands to enhance (sharpen) the spatial resolution of the TIR imagery. It is based on an assumed correlation over multiple scales of resolution, between image edge contrast patterns in the TIR band and several other spectral bands. A multilayer, feedforward NN is trained to approximate TIR data at 60m, given degraded (from 30-m to 60-m) spatial resolution input from spectral bands 7, 5, and 2. After training, the NN output for full-resolution input generates an approximation of a TIR image at 30-m resolution. Two methods are used to degrade the spatial resolution of the imagery used for NN training, and the corresponding sharpening results are compared. One degradation method uses a published sensor transfer function (TF) for Landsat 5 to simulate sensor coarser resolution imagery from higher resolution imagery. For comparison, the second degradation method is simply Gaussian low pass filtering and subsampling, wherein the Gaussian filter approximates the full width at half maximum amplitude characteristics of the TF-based spatial filter. Two fixed-size NNs (that is, number of weights and processing elements) were trained separately with the degraded resolution data, and the sharpening results compared. The comparison evaluates the relative influence of the degradation technique employed and whether or not it is desirable to incorporate a sensor TF model. Preliminary results indicate some improvements for the sensor model-based technique. Further evaluation using a higher resolution reference image and strict application of sensor model to data is recommended.

Wenatchee River, Washington, Water Temperature Modeling and Assessment Using Remotely Sensed Thermal Infrared and Instream Recorded Data

NASA Astrophysics Data System (ADS)

Cristea, N. C.; Burges, S. J.

2004-12-01

The stream water spatial and temporal temperature patterns of the Wenatchee River, WA are assessed based on temperature data recorded by instream data loggers in the dry season of 2002 and thermal infrared imagery from August 16th 2002. To gain insights into the possible thermal behavior of the river, the stream temperature model Qual2K (Chapra and Pelletier, 2003) is extended beyond its calibration (10-16 August 2002) and confirmation (9-11 September 2002) periods for use with different meteorological, shade and flow conditions. The temperature longitudinal profile of the Wenatchee River is influenced by the temperature regime in Lake Wenatchee, the source of the Wenatchee River. Model simulations performed at 7-day average with 2-year return period flow conditions show that the potential (maximum average across all reaches) temperature (the temperature that would occur under natural conditions) is about 19.8 deg. C. For the 7-day average with 10-year return period flow conditions the potential temperature increases to about 21.2 deg. C. The simulation results show that under normal flow and meteorological conditions the water temperature exceeds the current water quality standards. Model simulations performed under the 7-day average with 10-year return period flow conditions and a climate change scenario show that the average potential temperature across all reaches can increase by as much as 1.3 deg. C compared to the case where climate change impact is not taken into account. Thermal infrared (TIR) derived stream temperature data were useful for describing spatial distribution patterns of the Wenatchee River water temperature. The TIR and visible band images are effective tools to map cold water refugia for fish and to detect regions that can be improved for fish survival. The images collected during the TIR survey and the TIR derived stream temperature longitudinal profile helps pinpoint additional instream monitoring locations that avoid regions of backwater, cool or warm pockets or regions affected by tributary influence, that are inappropriate for stream temperature monitoring. Groundwater input is difficult to detect from the TIR images in the case of a relatively large river such the Wenatchee River.

Lithologic mapping of the Mordor, NT, Australia ultramafic complex by using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER)

USGS Publications Warehouse

Rowan, L.C.; Mars, J.C.; Simpson, C.J.

2005-01-01

Spectral measurements made in the Mordor Pound, NT, Australia study area using the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), in the laboratory and in situ show dominantly Al-OH and ferric-iron VNIR-SWIR absorption features in felsic rock spectra and ferrous-iron and Fe,Mg-OH features in the mafic-ultramafic rock spectra. ASTER ratio images, matched-filter, and spectral-angle mapper processing (SAM) were evaluated for mapping the lithologies. Matched-filter processing in which VNIR + SWIR image spectra were used for reference resulted in 4 felsic classes and 4 mafic-ultramafic classes based on Al-OH or Fe,Mg-OH absorption features and, in some, subtle reflectance differences related to differential weathering and vegetation. These results were similar to those obtained by match-filter analysis of HyMap data from a previous study, but the units were more clearly demarcated in the HyMap image. ASTER TIR spectral emittance data and laboratory emissivity measurements document a wide wavelength range of Si-O spectral features, which reflect the lithological diversity of the Mordor ultramafic complex and adjacent rocks. SAM processing of the spectral emittance data distinguished 2 classes representing the mafic-ultramafic rocks and 4 classes comprising the quartzose to intermediate composition rocks. Utilization of the complementary attributes of the spectral reflectance and spectral emittance data resulted in discrimination of 4 mafic-ultramafic categories; 3 categories of alluvial-colluvial deposits; and a significantly more completely mapped quartzite unit than could be accomplished by using either data set alone. ?? 2005 Elsevier Inc. All rights reserved.

Remote observations of eruptive clouds and surface thermal activity during the 2009 eruption of Redoubt volcano

NASA Astrophysics Data System (ADS)

Webley, P. W.; Lopez, T. M.; Ekstrand, A. L.; Dean, K. G.; Rinkleff, P.; Dehn, J.; Cahill, C. F.; Wessels, R. L.; Bailey, J. E.; Izbekov, P.; Worden, A.

2013-06-01

Volcanoes often erupt explosively and generate a variety of hazards including volcanic ash clouds and gaseous plumes. These clouds and plumes are a significant hazard to the aviation industry and the ground features can be a major hazard to local communities. Here, we provide a chronology of the 2009 Redoubt Volcano eruption using frequent, low spatial resolution thermal infrared (TIR), mid-infrared (MIR) and ultraviolet (UV) satellite remote sensing data. The first explosion of the 2009 eruption of Redoubt Volcano occurred on March 15, 2009 (UTC) and was followed by a series of magmatic explosive events starting on March 23 (UTC). From March 23-April 4 2009, satellites imaged at least 19 separate explosive events that sent ash clouds up to 18 km above sea level (ASL) that dispersed ash across the Cook Inlet region. In this manuscript, we provide an overview of the ash clouds and plumes from the 19 explosive events, detailing their cloud-top heights and discussing the variations in infrared absorption signals. We show that the timing of the TIR data relative to the event end time was critical for inferring the TIR derived height and true cloud top height. The ash clouds were high in water content, likely in the form of ice, which masked the negative TIR brightness temperature difference (BTD) signal typically used for volcanic ash detection. The analysis shown here illustrates the utility of remote sensing data during volcanic crises to measure critical real-time parameters, such as cloud-top heights, changes in ground-based thermal activity, and plume/cloud location.

Both nuclear and cytoplasmic components are defective in oocytes of the B6.Y(TIR) sex-reversed female mouse.

PubMed

Amleh, A; Smith, L; Chen, H; Taketo, T

2000-03-15

In the mammalian gonadal primordium, activation of the Sry gene on the Y chromosome initiates a cascade of genetic events leading to testicular organization whereas its absence results in ovarian differentiation. An exception occurs when the Y chromosome of Mus musculus domesticus from Tirano, Italy (Y(TIR)), is placed on the C57BL/6J (B6) genetic background. The B6.Y(TIR) progeny develop only ovaries or ovotestes despite Sry transcription in fetal life. Consequently, the XY offspring with bilateral ovaries develop into apparently normal females, but their eggs fail to develop after fertilization. Our previous studies have shown that the primary cause of infertility can be attributed to oocytes rather than their surrounding somatic cells in the XY ovary. This study attempted to identify the defects in oocytes from the B6.Y(TIR) female mouse. We examined the developmental potential of embryos from XY and XX females after exchanging their nuclear components by microsurgery following in vitro maturation and fertilization. The results suggest that both nuclear and cytoplasmic components are defective in oocytes from XY females. In the XY fetal ovary, most germ cells entered meiosis and their autosomes appeared to synapse normally while the X and Y chromosomes remained unpaired during meiotic prophase. This lack of X-Y pairing probably caused aneuploidy in some secondary oocytes following in vitro maturation. However, normal numbers of chromosomes in the rest of the secondary oocytes indicate that aneuploidy alone can not explain the nuclear defect in oocytes. Copyright 2000 Academic Press.

Optical detection of buried explosive hazards: a longitudinal comparison of three types of imagery

NASA Astrophysics Data System (ADS)

Staszewski, James J.; Hibbitts, Charles H.; Davis, Luke; Bursley, James

2013-06-01

Visual detection of soil disturbances is a surprisingly effective, but far from perfect way of detecting buried explosive threats such as landmines and improvised explosive devices (IEDs). This effort builds upon the few systematic studies of optical detection in this area. It investigates observer sensitivity to optical information produced by the burial of anti-tank and small anti-personnel landmines asking "How detectable are disturbed soil signatures captured in visible (VIS), shortwave infrared (SWIR), and thermal infrared (TIR), bands?" "Which band or bands are most effective for detection?" and "How well does each band support detection in the natural environment over time?" Using signal detection procedures this study presented young adults photographs showing soil disturbed by landmine burial or adjacent undisturbed surfaces with instructions to make decisions about the presence or absence of a disturbance. Stimuli spanned a six-week time period over which VIS, SWIR, and TIR imagery was collected. Results show that (a) signal strength persists surprisingly well over the observation period, (b) generally, SWIR and VIS show consistently strong performance for large anti-tank mines and SWIR shows the soil signature for the small, anti-personnel mine remarkably well. TIR lags the other two bands when using d' to measure performance, but shows promising hit rates for anti-tank mine signatures under appropriate conditions. Generally, results show that the SWIR and VIS bands show most promise as a practical means of explosive hazards detection, although TIR can work effectively for large anti-tank mines under certain conditions. Limitations and implications for further research are discussed.

The interaction and integration of auxin signaling components.

PubMed

Hayashi, Ken-ichiro

2012-06-01

IAA, a naturally occurring auxin, is a simple signaling molecule that regulates many diverse steps of plant development. Auxin essentially coordinates plant development through transcriptional regulation. Auxin binds to TIR1/AFB nuclear receptors, which are F-box subunits of the SCF ubiquitin ligase complex. The auxin signal is then modulated by the quantitative and qualitative responses of the Aux/IAA repressors and the auxin response factor (ARF) transcription factors. The specificity of the auxin-regulated gene expression profile is defined by several factors, such as the expression of these regulatory proteins, their post-transcriptional regulation, their stability and the affinity between these regulatory proteins. Auxin-binding protein 1 (ABP1) is a candidate protein for an auxin receptor that is implicated in non-transcriptional auxin signaling. ABP1 also affects TIR1/AFB-mediated auxin-responsive gene expression, implying that both the ABP1 and TIR1/AFB signaling machineries coordinately control auxin-mediated physiological events. Systematic approaches using the comprehensive mapping of the expression and interaction of signaling modules and computational modeling would be valuable for integrating our knowledge of auxin signals and responses.

Brucella TIR-like protein TcpB/Btp1 specifically targets the host adaptor protein MAL/TIRAP to promote infection.

PubMed

Li, Wenna; Ke, Yuehua; Wang, Yufei; Yang, Mingjuan; Gao, Junguang; Zhan, Shaoxia; Xinying, Du; Huang, Liuyu; Li, Wenfeng; Chen, Zeliang; Li, Juan

2016-08-26

Brucella spp. are known to avoid host immune recognition and weaken the immune response to infection. Brucella like accomplish this by employing two clever strategies, called the stealth strategy and hijacking strategy. The TIR domain-containing protein (TcpB/Btp1) of Brucella melitensis is thought to be involved in inhibiting host NF-κB activation by binding to adaptors downstream of Toll-like receptors. However, of the five TIR domain-containing adaptors conserved in mammals, whether MyD88 or MAL, even other three adaptors, are specifically targeted by TcpB has not been identified. Here, we confirmed the effect of TcpB on B.melitensis virulence in mice and found that TcpB selectively targets MAL. By using siRNA against MAL, we found that TcpB from B.melitensis is involved in intracellular survival and that MAL affects intracellular replication of B.melitensis. Our results confirm that TcpB specifically targets MAL/TIRAP to disrupt downstream signaling pathways and promote intra-host survival of Brucella spp. Copyright © 2016 Elsevier Inc. All rights reserved.

Optical properties of mineral dust aerosol in the thermal infrared

NASA Astrophysics Data System (ADS)

Köhler, Claas H.

2017-02-01

The optical properties of mineral dust and biomass burning aerosol in the thermal infrared (TIR) are examined by means of Fourier Transform Infrared Spectrometer (FTIR) measurements and radiative transfer (RT) simulations. The measurements were conducted within the scope of the Saharan Mineral Dust Experiment 2 (SAMUM-2) at Praia (Cape Verde) in January and February 2008. The aerosol radiative effect in the TIR atmospheric window region 800-1200 cm-1 (8-12 µm) is discussed in two case studies. The first case study employs a combination of IASI measurements and RT simulations to investigate a lofted optically thin biomass burning layer with emphasis on its potential influence on sea surface temperature (SST) retrieval. The second case study uses ground based measurements to establish the importance of particle shape and refractive index for benchmark RT simulations of dust optical properties in the TIR domain. Our research confirms earlier studies suggesting that spheroidal model particles lead to a significantly improved agreement between RT simulations and measurements compared to spheres. However, room for improvement remains, as the uncertainty originating from the refractive index data for many aerosol constituents prohibits more conclusive results.

Bispectral infrared forest fire detection and analysis using classification techniques

NASA Astrophysics Data System (ADS)

Aranda, Jose M.; Melendez, Juan; de Castro, Antonio J.; Lopez, Fernando

2004-01-01

Infrared cameras are well established as a useful tool for fire detection, but their use for quantitative forest fire measurements faces difficulties, due to the complex spatial and spectral structure of fires. In this work it is shown that some of these difficulties can be overcome by applying classification techniques, a standard tool for the analysis of satellite multispectral images, to bi-spectral images of fires. Images were acquired by two cameras that operate in the medium infrared (MIR) and thermal infrared (TIR) bands. They provide simultaneous and co-registered images, calibrated in brightness temperatures. The MIR-TIR scatterplot of these images can be used to classify the scene into different fire regions (background, ashes, and several ember and flame regions). It is shown that classification makes possible to obtain quantitative measurements of physical fire parameters like rate of spread, embers temperature, and radiated power in the MIR and TIR bands. An estimation of total radiated power and heat release per unit area is also made and compared with values derived from heat of combustion and fuel consumption.

Low-cost thermal-IR imager for an Earth observation microsatellite

NASA Astrophysics Data System (ADS)

Oelrich, Brian D.; Underwood, Craig I.

2017-11-01

A new class of thermal infrared (TIR) Earth Observation (EO) data will become available with the flight of miniature TIR EO instruments in a multiple micro-satellite constellation. This data set will provide a unique service for those wishing to analyse trends or rapidly detect anomalous changes in the TIR characteristics of the Earth's surface or atmosphere (e.g. fire detection). Following a preliminary study of potential mission applications, uncooled commercial-off-the-shelf (COTS) technology was selected to form the basis of a low-cost, compact instrument capable of complementing existing visible and near IR EO capabilities on a sub-100kg Surrey micro-satellite. The preliminary 2-3 kg instrument concept has been designed to yield a 325 m ground sample distance over a 200 km swath width from a constellation altitude of 700 km. The radiometric performance, enhanced with time-delayed integration (TDI), is expected to yield a NETD less than 0.5 K for a 300 K ground scene. Fabrication and characterization of a space-ready instrument is planned for late 2004.

Thermal-infrared imager TIR on Hayabusa2: Result of ground calibration

NASA Astrophysics Data System (ADS)

Okada, T.; Fukuhara, T.; Tanaka, S.; Taguchi, M.; Arai, T.; Imamura, T.; Senshu, H.; Sekiguchi, T.; Ogawa, Y.; Demura, H.; Sakatani, N.; Horikawa, Y.; Helbert, J.; Mueller, T.; Hagermann, A.; H. TIR-Team

2014-07-01

Thermal-infrared imager TIR on Hayabusa2 will image C-class NEA (162173)1999JU3 in 8-12 micrometer band. TIR observation is not only for scientific investigation of asteroid thermo-physical properties, but also for assessment of landing site selection and safety descent operation. Hayabusa2 is the follow-on mission after Hayabusa that accomplished the first asteroid sample-return in 2010. Hayabusa2 is primarily an asteroid sample-return mission, but remote sensing of the asteroid is also essential to understand the global nature of asteroid, complementary to returned samples. Active impact experiment using SCI (Small Carry-on Impactor) and surface measurements using MASCOT lander which carries camera, NIR imaging microscope, radiator, and magnetometer, as well as hopping rover MINERVA are also planned in this mission. A thermal-infrared imager is to image the surface temperature profile and its temporal variation by asteroid rotation. TIR adopts a non- cooled bolometer array NEC 320A with 328×248 effective pixels. Its fields of view covers 16°×12° with 0.05° per pixel. The image can be taken at 60 Hz, and summation onboard can be set from 1 to 128 to improve signal-to-background ratio. The imaging is interlaced with the shutter open and close. The subtraction of shutter-close image (bias data) from shutter-open image (biased image) produces the realistic thermal images. To improve more accurate data in radiation intensity, those realistic thermal images can be summed by onboard software. Data compression is also conducted by onboard software[1]. TIR is based on LIR on Akatsuki Venus climate orbiter [2]. We know something about C-type meteorites but little about C-class asteroids. We know little about asteroid 1999JU3 but it is considered as something like low-dense and huge-cratered as asteroid 253 Mathilde, or like rubble-piled, sedimented small asteroid 25143 Itokawa. To investigate the nature of asteroid and its formation processes, thermo-physical properties of boulders or materials inside huge crates are important targets to observe. Evident thermal measurements are conducted to compare them with thermal model for ground observation, and to investigate Yarkovsky or YORP effects. If the orbiting satellites or dust clouds exist at the surroundings, asteroid mass or dust properties will be determined. Cooperative observation with radiometer on MASCOT is also important to determine the thermo-physical properties precisely. We conducted radiometric and geometric calibration for TIR. We use the cavity black-body and oil-bath based black-body plates for calibration at higher temperature from 25 to 150 °C. We also use the black-body plate inside the vacuum chamber for lower temperature from -40 to +50 °C. Both of appratuses share the temperature region from 25 to 50 °C. For geometrical correction, collimator is used measure the square-shaped target. For cross-calibration, the same targets are used for other instruments: 30 cm diameter serpentine target plate with heater is shared with MARA radiometer on MASCOT, and the same meteorite samples (Murchison CM2 meteorites, Murray CM2 meteorites) are shared with NIRS3 spectrometer and ONC camera. The landscape and the walls of test sites were imaged for demonstration. TIR is able to measure the surface temperature from -40 to 150 °C at the central region of images (a little wider range but less resolution at non-central region). The absolute temperature is less than 2 °C, and the resolution (NETD) is less than 0.3 °C for most of conditions. TIR is well calibrated thermal-infrared imager to take thermal images of asteroid and investigate its thermo-physical properties. This type of instruments will be used in other future missions for scientific and operational purposes.

Characterizing Nanophase Materials on Mars: Spectroscopic Studies of Allophane and Imogolite

NASA Technical Reports Server (NTRS)

Jeute, Thomas; Baker, Leslie; Bishop, Janice; Rampe, Elizabeth; Abidin, Zaenal

2017-01-01

Allophane is an amorphous or poorly crystalline hydrous aluminosilicate material. Allophane's chemical structure represents a hollow nanosphere, 5-6 nm in diameter with 4-7 large pores in the structure. Identification of allophane and other amorphous and nanophase minerals on Mars has provided clues about the aqueous geochemical environment there. These materials likely represent partially altered or leached basaltic ash and therefore, could represent a geologic marker for where water was present on the Martian surface; as well as indicate regions of climate change, where surface water was not present long enough or sufficiently warm to form clays. Characterization of these materials is important for increasing spectral recognition capabilities using visible/near-infrared (VNIR) and thermal infrared (TIR) spectra of Mars. A suite of synthetic allophane samples was created using a method that has been modified to produce allophane with Fe isomorphically substituted for Al in octahedral coordination. Compositions of the materials range from high-Si allophane (molar Al:Si = 1:2) to protoimogolite (Al:Si = 2:1), with Fe(3+) and Fe(2+) isomorphically substituted for Al from 0-10 mol% of total Al. These compositions span the range observed in natural terrestrial allophanes. Fe K-edge X-ray absorption spectroscopy provided information on the speciation and electrochemical and structural position of Fe in the framework. Fourier transform infrared spectroscopy confirmed syntheses and demonstrated changes in infrared spectroscopic signature with Fe substitution. VNIR reflectance spectra and TIR Thermal infrared emissivity spectra were also collected for direct comparison to Martian data. By increasing spectral recognition capacities of nanophase materials, more accurate estimates can be made on the aqueous geochemical environment of Mars.

Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

DOE PAGES

Wang, Renhou; Estelle, Mark

2014-07-15

Auxin is a versatile plant hormone that plays an essential role in most aspects of plant growth and development. Auxin regulates various growth processes by modulating gene transcription through a SCF TIR1/AFB-Aux/IAA-ARF nuclear signaling module. Recent work has generated clues as to how multiple layers of regulation of the auxin signaling components may result in diverse and specific response outputs. Finally, in particular, interaction and structural studies of key auxin signaling proteins have produced novel insights into the molecular basis of auxin-regulated transcription and may lead to a refined auxin signaling model.

Enhancement of multispectral thermal infrared images - Decorrelation contrast stretching

NASA Technical Reports Server (NTRS)

Gillespie, Alan R.

1992-01-01

Decorrelation contrast stretching is an effective method for displaying information from multispectral thermal infrared (TIR) images. The technique involves transformation of the data to principle components ('decorrelation'), independent contrast 'stretching' of data from the new 'decorrelated' image bands, and retransformation of the stretched data back to the approximate original axes, based on the inverse of the principle component rotation. The enhancement is robust in that colors of the same scene components are similar in enhanced images of similar scenes, or the same scene imaged at different times. Decorrelation contrast stretching is reviewed in the context of other enhancements applied to TIR images.

Monitoring Changing Eruption Styles of Kilauea Volcano Over the Summer of 2007 With Spaceborne Infrared Data

NASA Astrophysics Data System (ADS)

Ramsey, M.; Wessels, R.

2007-12-01

On June 19, 2007 episode 56 (the Father's Day intrusion) of the ongoing eruption at Kilauea Volcano culminated with a small eruption of lava from a 250 m long fissure approximately 6 km west of Pu'u 'O'o. The event was preceded by an earthquake swarm and attributed to the intrusion of magma. This intrusion was also associated with cessation of activity at Pu'u 'O'o and deflation of its summit region. On July 21, 2007 new lava then erupted along a set of fissures that extended eastward from Pu'u 'O'o toward the old Kupaianaha vent. By early September, this eruption continued to supply a lava channel approximately 1 km long, which has fed two 'a'a flow lobes advancing to the northeast and southeast. We describe the application of spaceborne imaging data from the visible to the thermal infrared (TIR) wavelengths for monitoring activity throughout this period. Satellite thermal infrared (TIR) data with low spatial resolution (i.e., kms/pixel) have been used for years to monitor changes in surface thermal features such as volcanic flows. However, the use of higher spatial resolution data allows for the extraction of physical parameters at meter to sub-meter scales. The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) provides TIR, shortwave infrared (SWIR), and visible-near infrared (VNIR) data ideal for this type of analysis, hazard assessment, and smaller-scale monitoring of active lava flows. From June-August of 2007, ASTER was scheduled 23 times and collected 11 independent scenes of the new flow activity at Kilauea. Of these, 7 were clear to partly-cloudy and show excellent coverage of the activity following the Father's Day intrusion. TIR and SWIR data, converted to atmospherically corrected emitted surface radiance, have been used to extract flow extent, areal coverage, flow advance rate, and maximum brightness temperature. These data correlate well with descriptions of the flow activity documented by Hawaiian Volcano Observatory field crews. For example, the ASTER night time image collected on July 19 (22:42:56 HST) had a maximum SWIR-derived temperature of 305 C, and a total thermally-elevated area of 0.19 sq. km. Within that region, 3 distinctly hotter zones were identified as most likely the West Gap pit craters, which were described as intermittently overflowing to form a small lava lake at the time. Following the July 21 fissure eruption, ASTER observations were augmented with non-standard approaches such as collecting visible night time data in order to accurately extract the higher temperature of the open lava channel. Although clouds partially obscure the August 30 night image, a maximum pixel-integrated temperature of 750 C was detected using the VNIR night- time data for the first time. Such a monitoring program coordinated between NASA and a USGS volcano observatory can provide important data on hot spot detection, eruption rate, and flow advance at times where it may be too costly or risky to send scientists into the field.

Implications of atmospheric conditions for analysis of surface temperature variability derived from landscape-scale thermography.

PubMed

Hammerle, Albin; Meier, Fred; Heinl, Michael; Egger, Angelika; Leitinger, Georg

2017-04-01

Thermal infrared (TIR) cameras perfectly bridge the gap between (i) on-site measurements of land surface temperature (LST) providing high temporal resolution at the cost of low spatial coverage and (ii) remotely sensed data from satellites that provide high spatial coverage at relatively low spatio-temporal resolution. While LST data from satellite (LST sat ) and airborne platforms are routinely corrected for atmospheric effects, such corrections are barely applied for LST from ground-based TIR imagery (using TIR cameras; LST cam ). We show the consequences of neglecting atmospheric effects on LST cam of different vegetated surfaces at landscape scale. We compare LST measured from different platforms, focusing on the comparison of LST data from on-site radiometry (LST osr ) and LST cam using a commercially available TIR camera in the region of Bozen/Bolzano (Italy). Given a digital elevation model and measured vertical air temperature profiles, we developed a multiple linear regression model to correct LST cam data for atmospheric influences. We could show the distinct effect of atmospheric conditions and related radiative processes along the measurement path on LST cam , proving the necessity to correct LST cam data on landscape scale, despite their relatively low measurement distances compared to remotely sensed data. Corrected LST cam data revealed the dampening effect of the atmosphere, especially at high temperature differences between the atmosphere and the vegetated surface. Not correcting for these effects leads to erroneous LST estimates, in particular to an underestimation of the heterogeneity in LST, both in time and space. In the most pronounced case, we found a temperature range extension of almost 10 K.

RST (Robust Satellite Techniques) analysis for monitoring earth emitted radiation in seismically active area of California (US): a long term (2006-2011) analysis of GOES-W/IMAGER thermal data

NASA Astrophysics Data System (ADS)

Tramutoli, V.; Armandi, B.; Filizzola, C.; Genzano, N.; Lisi, M.; Paciello, R.; Pergola, N.

2014-12-01

More than ten years of applications of the RST (Robust Satellite Techniques) methodology for monitoring earthquake prone area by using satellite TIR(Thermal InfraRed) data, have shown the ability of this approach to discern anomalous TIR signals possibly associated to seismic activity from normal fluctuations of Earth's thermal emission related to other causes independent on the earthquake occurrence. The RST approach was already tested in the case of tens of earthquakes occurred in different continents (Europe, Asia, America and Africa), in various geo-tectonic settings (compressive, extensional and transcurrent) and with a wide range of magnitudes (from 4.0 to 7.9), by analyzing time series of TIR images acquired by sensors on board of polar (like NOAA/AVHRR, EOS/MODIS) and geostationary satellites (like MFG/MVIRI, MSG/SEVIRI, GOES/IMAGER). In addition RST method has been independently tested by several researchers around the world as well as in the framework of several projects funded by different national space agencies (like the Italian ASI, the U.S. NASA and the German DLR) and recently during the EC-FP7 projectPRE-EARTHQUAKES (www.pre-earthquakes.org),which was devoted to study the earthquake precursors using satellite techniques. This paper will show the results of RST analysis on 6 years (2006-2011)of TIR satellite record collected by GOES-W/IMAGER over Southern part United State (California).Results will be discussed particularly in the prospective of an integrated approach devoted to systematically collectand analyze in real-time, independent observations for a time-Dependent Assessment of Seismic Hazard (t-DASH).

Micron-scale roughness of volcanic surfaces from thermal infrared spectroscopy and scanning electron microscopy

NASA Astrophysics Data System (ADS)

Carter, Adam J.; Ramsey, Michael S.; Durant, Adam J.; Skilling, Ian P.; Wolfe, Amy

2009-02-01

Textural characteristics of recently emplaced volcanic materials provide information on the degassing history, volatile content, and future explosive activity of volcanoes. Thermal infrared (TIR) remote sensing has been used to derive the micron-scale roughness (i.e., surface vesicularity) of lavas using a two-component (glass plus blackbody) spectral deconvolution model. We apply and test this approach on TIR data of pyroclastic flow (PF) deposits for the first time. Samples from two PF deposits (January 2005: block-rich and March 2000: ash-rich) were collected at Bezymianny Volcano (Russia) and analyzed using (1) TIR emission spectroscopy, (2) scanning electron microscope (SEM)-derived roughness (profiling), (3) SEM-derived surface vesicularity (imaging), and (4) thin section observations. Results from SEM roughness (0.9-2.8 μm) and SEM vesicularity (18-26%) showed a positive correlation. These were compared to the deconvolution results from the laboratory and spaceborne spectra, as well as to field-derived percentages of the block and ash. The spaceborne results were within 5% of the laboratory results and showed a positive correlation. However, a negative correlation between the SEM and spectral results was observed and was likely due to a combination of factors; an incorrect glass end-member, particle size effects, and subsequent weathering/reworking of the PF deposits. Despite these differences, this work shows that microscopic textural heterogeneities on PF deposits can be detected with TIR remote sensing using a technique similar to that used for lavas, but the results must be carefully interpreted. If applied correctly, it could be an important tool to map recent PF deposits and infer the causative eruption style/mechanism.

A Populus TIR1 gene family survey reveals differential expression patterns and responses to 1-naphthaleneacetic acid and stress treatments

PubMed Central

Shu, Wenbo; Liu, Yingli; Guo, Yinghua; Zhou, Houjun; Zhang, Jin; Zhao, Shutang; Lu, Mengzhu

2015-01-01

The plant hormone auxin is a central regulator of plant growth. TRANSPORT INHIBITOR RESPONSE 1/AUXIN SIGNALING F-BOX (TIR1/AFB) is a component of the E3 ubiquitin ligase complex SCFTIR1/AFB and acts as an auxin co-receptor for nuclear auxin signaling. The SCFTIR1/AFB-proteasome machinery plays a central regulatory role in development-related gene transcription. Populus trichocarpa, as a model tree, has a unique fast-growth trait to which auxin signaling may contribute. However, no systematic analyses of the genome organization, gene structure, and expression of TIR1-like genes have been undertaken in this woody model plant. In this study, we identified a total of eight TIR1 genes in the Populus genome that are phylogenetically clustered into four subgroups, PtrFBL1/PtrFBL2, PtrFBL3/PtrFBL4, PtrFBL5/PtrFBL6, and PtrFBL7/PtrFBL8, representing four paralogous pairs. In addition, the gene structure and motif composition were relatively conserved in each paralogous pair and all of the PtrFBL members were localized in the nucleus. Different sets of PtrFBLs were strongly expressed in the leaves, stems, roots, cambial zones, and immature xylem of Populus. Interestingly, PtrFBL1 and 7 were expressed mainly in vascular and cambial tissues, respectively, indicating their potential but different roles in wood formation. Furthermore, Populus FBLs responded differentially upon exposure to various stresses. Finally, over-expression studies indicated a role of FBL1 in poplar stem growth and response to drought stress. Collectively, these observations lay the foundation for further investigations into the potential roles of PtrFBL genes in tree growth and development. PMID:26442033

Investigating the effect of key mutations on the conformational dynamics of toll-like receptor dimers through molecular dynamics simulations and protein structure networks.

PubMed

Mahita, Jarjapu; Sowdhamini, Ramanathan

2018-04-01

The Toll-like receptors (TLRs) are critical components of the innate immune system due to their ability to detect conserved pathogen-associated molecular patterns, present in bacteria, viruses, and other microorganisms. Ligand detection by TLRs leads to a signaling cascade, mediated by interactions among TIR domains present in the receptors, the bridging adaptors and sorting adaptors. The BB loop is a highly conserved region present in the TIR domain and is crucial for mediating interactions among TIR domain-containing proteins. Mutations in the BB loop of the Toll-like receptors, such as the A795P mutation in TLR3 and the P712H mutation (Lps d mutation) in TLR4, have been reported to disrupt or alter downstream signaling. While the phenotypic effect of these mutations is known, the underlying effect of these mutations on the structure, dynamics and interactions with other TIR domain-containing proteins is not well understood. Here, we have attempted to investigate the effect of the BB loop mutations on the dimer form of TLRs, using TLR2 and TLR3 as case studies. Our results based on molecular dynamics simulations, protein-protein interaction analyses and protein structure network analyses highlight significant differences between the dimer interfaces of the wild-type and mutant forms and provide a logical reasoning for the effect of these mutations on adaptor binding to TLRs. Furthermore, it also leads us to propose a hypothesis for the differential requirement of signaling and bridging adaptors by TLRs. This could aid in further understanding of the mechanisms governing such signaling pathways. © 2018 Wiley Periodicals, Inc.

Influence of abutment type and esthetic veneering on preload maintenance of abutment screw of implant-supported crowns.

PubMed

Delben, Juliana Aparecida; Barão, Valentim Adelino Ricardo; Dos Santos, Paulo Henrique; Assunção, Wirley Gonçalves

2014-02-01

The effect of veneering materials on screw joint stability remains inconclusive. Thus, this study evaluated the preload maintenance of abutment screws of single crowns fabricated with different abutments and veneering materials. Sixty crowns were divided into five groups (n = 12): UCLA abutment in gold alloy with ceramic (group GC) and resin (group GR) veneering, UCLA abutment in titanium with ceramic (group TiC) and resin (group TiR) veneering, and zirconia abutment with ceramic veneering (group ZiC). Abutment screws made of gold were used with a 35 Ncm insertion torque. Detorque measurements were obtained initially and after mechanical cycling. Data were analyzed by ANOVA and Fisher's exact test at a significance level of 5%. For the initial detorque means (in Ncm), group TiC (21.4 ± 1.78) exhibited statistically lower torque maintenance than groups GC (23.9 ± 0.91), GR (24.1 ± 1.34), and TiR (23.2 ± 1.33) (p < 0.05, Fisher's exact test). Group ZiC (21.9 ± 2.68) exhibited significantly lower torque maintenance than groups GC, GR, and TiR (p < 0.05, Fisher's exact test). After mechanical cycling, there was a statistically significant difference between groups TiC (22.1 ± 1.86) and GR (23.8 ± 1.56); between groups ZiC (21.7 ± 2.02) and GR; and also between groups ZiC and TiR (23.6 ± 1.30) (p < 0.05, Fisher's exact test). Detorque reduction occurred regardless of abutment type and veneering material. More irregular surfaces in the hexagon area of the castable abutments were observed. The superiority of any veneering material concerning preload maintenance was not established. © 2013 by the American College of Prosthodontists.

Mapping Weathering and Alteration Minerals in the Comstock and Geiger Grade Areas using Visible to Thermal Infrared Airborne Remote Sensing Data

NASA Technical Reports Server (NTRS)

Vaughan, Greg R.; Calvin, Wendy M.

2005-01-01

To support research into both precious metal exploration and environmental site characterization a combination of high spatial/spectral resolution airborne visible, near infrared, short wave infrared (VNIR/SWIR) and thermal infrared (TIR) image data were acquired to remotely map hydrothermal alteration minerals around the Geiger Grade and Comstock alteration regions, and map the mineral by-products of weathered mine dumps in Virginia City. Remote sensing data from the Airborne Visible Infrared Imaging Spectrometer (AVIRIS), SpecTIR Corporation's airborne hyperspectral imager (HyperSpecTIR), the MODIS-ASTER airborne simulator (MASTER), and the Spatially Enhanced Broadband Array Spectrograph System (SEBASS) were acquired and processed into mineral maps based on the unique spectral signatures of image pixels. VNIR/SWIR and TIR field spectrometer data were collected for both calibration and validation of the remote data sets, and field sampling, laboratory spectral analyses and XRD analyses were made to corroborate the surface mineralogy identified by spectroscopy. The resulting mineral maps show the spatial distribution of several important alteration minerals around each study area including alunite, quartz, pyrophyllite, kaolinite, montmorillonite/muscovite, and chlorite. In the Comstock region the mineral maps show acid-sulfate alteration, widespread propylitic alteration and extensive faulting that offsets the acid-sulfate areas, in contrast to the larger, dominantly acid-sulfate alteration exposed along Geiger Grade. Also, different mineral zones within the intense acid-sulfate areas were mapped. In the Virginia City historic mining district the important weathering minerals mapped include hematite, goethite, jarosite and hydrous sulfate minerals (hexahydrite, alunogen and gypsum) located on mine dumps. Sulfate minerals indicate acidic water forming in the mine dump environment. While there is not an immediate threat to the community, there are clearly sources of acidic drainage that were identified remotely.

MACS-Mar: a real-time remote sensing system for maritime security applications

NASA Astrophysics Data System (ADS)

Brauchle, Jörg; Bayer, Steven; Hein, Daniel; Berger, Ralf; Pless, Sebastian

2018-04-01

The modular aerial camera system (MACS) is a development platform for optical remote sensing concepts, algorithms and special environments. For real-time services for maritime security (EMSec joint project), a new multi-sensor configuration MACS-Mar was realized. It consists of four co-aligned sensor heads in the visible RGB, near infrared (NIR, 700-950 nm), hyperspectral (HS, 450-900 nm) and thermal infrared (TIR, 7.5-14 µm) spectral range, a mid-cost navigation system, a processing unit and two data links. On-board image projection, cropping of redundant data and compression enable the instant generation of direct-georeferenced high-resolution image mosaics, automatic object detection, vectorization and annotation of floating objects on the water surface. The results were transmitted over a distance up to 50 km in real-time via narrow and broadband data links and were visualized in a maritime situation awareness system. For the automatic onboard detection of floating objects, a segmentation and classification workflow based on RGB, IR and TIR information was developed and tested. The completeness of the object detection in the experiment resulted in 95%, the correctness in 53%. Mostly, bright backwash of ships lead to an overestimation of the number of objects, further refinement using water homogeneity in the TIR, as implemented in the workflow, couldn't be carried out due to problems with the TIR sensor, else distinctly better results could have been expected. The absolute positional accuracy of the projected real-time imagery resulted in 2 m without postprocessing of images or navigation data, the relative measurement accuracy of distances is in the range of the image resolution, which is about 12 cm for RGB imagery in the EMSec experiment.

Using Spectroscopy to Infer the Eruption Style and Volatile History of Volcanic Tephras

NASA Astrophysics Data System (ADS)

McBride, M. J.; Horgan, B. H. N.; Rowe, M. C.; Wall, K. T.; Oxley, B. M.

2017-12-01

The interaction between volatiles and magma strongly influences volcanic eruption styles, and results in an increase in the glass component of volcanic tephra. On Earth, both phreatomagmatic and magmatic explosive eruptions create glassy tephras. Phreatomagmatic eruptions form abundant glass by quickly quenching lava through interaction with meteoric water while magmatic eruptions create less glass through slower cooling within larger pyroclasts or eruption columns. Wall et al. (2014) used X-ray diffraction (XRD) of diverse tephra samples to show that glass content correlates with eruption style, as magmatic samples contain less glass than phreatomagmatic samples. While use of XRD is limited to Earth and the Curiosity rover on Mars, orbital spectroscopy is much a more common technique in the exploration of terrestrial bodies. In this study, we evaluate whether or not spectroscopy can be used to infer eruption style and thus volatile history. Visible/near-infrared (VNIR) and thermal-infrared (TIR) spectra were collected of the Wall et al. (2014) tephra samples, and were analyzed for trends related to glass content and thus eruption style. VNIR spectra can detect glass at high abundances as well as hydrothermal alteration minerals produced during interactions with meteoric water. Using TIR, glass abundances can be derived by deconvolving the spectra with a standard spectral library; however, due to the non-unique spectral shape of glass, intermediate to high glass abundances in tephras are difficult to differentiate using TIR alone. Synthetic mixtures of glass and crystalline minerals verify these results. Therefore, the most effective method for determining glass abundance and thus eruption style from volcanic deposits is a combination of VNIR and TIR spectral analysis. Using standard planetary remote sensing instrumentation to infer eruption styles will provide a new window into the volcanic and volatile histories of terrestrial bodies.

The infrared-radio correlation of spheroid- and disc-dominated star-forming galaxies to z ˜ 1.5 in the COSMOS field

NASA Astrophysics Data System (ADS)

Molnár, Dániel Cs; Sargent, Mark T.; Delhaize, Jacinta; Delvecchio, Ivan; Smolčić, Vernesa; Novak, Mladen; Schinnerer, Eva; Zamorani, Giovanni; Bondi, Marco; Herrera-Ruiz, Noelia; Murphy, Eric J.; Vardoulaki, Eleni; Karim, Alexander; Leslie, Sarah; Magnelli, Benjamin; Carollo, C. Marcella; Middelberg, Enno

2018-03-01

Using infrared data from the Herschel Space Observatory and Karl G. Jansky Very Large Array 3 GHz observations in the COSMOS field, we investigate the redshift evolution of the infrared-radio correlation (IRRC) for star-forming galaxies (SFGs) we classify as either spheroid- or disc-dominated based on their morphology. The sample predominantly consists of disc galaxies with stellar mass ≳ 1010 M⊙, and residing on the star-forming main sequence (MS). After the removal of AGN using standard approaches, we observe a significant difference between the redshift evolution of the median IR/radio ratio \\overline{q}_{TIR} of (i) a sample of ellipticals, plus discs with a substantial bulge component (`spheroid-dominated' SFGs) and, (ii) virtually pure discs and irregular systems (`disc-dominated' SFGs). The spheroid-dominated population follows a declining \\overline{q}_{TIR} versus z trend similar to that measured in recent evolutionary studies of the IRRC. However, for disc-dominated galaxies, where radio and IR emission should be linked to star formation in the most straightforward way, we measure very little change in \\overline{q}_{TIR}. This suggests that low-redshift calibrations of radio emission as a star formation rate (SFR) tracer may remain valid out to at least z ≃ 1-1.5 for pure star-forming systems. We find that the different redshift evolution of qTIR for the spheroid- and disc-dominated sample is mainly due to an increasing radio excess for spheroid-dominated galaxies at z ≳ 0.8, hinting at some residual AGN activity in these systems. This finding demonstrates that in the absence of AGN, the IRRC is independent of redshift, and that radio observations can therefore be used to estimate SFRs at all redshifts for genuinely star-forming galaxies.

Discriminating plant species across California's diverse ecosystems using airborne VSWIR and TIR imagery

NASA Astrophysics Data System (ADS)

Meerdink, S.; Roberts, D. A.; Roth, K. L.

2015-12-01

Accurate knowledge of the spatial distribution of plant species is required for many research and management agendas that track ecosystem health. Because of this, there is continuous development of research focused on remotely-sensed species classifications for many diverse ecosystems. While plant species have been mapped using airborne imaging spectroscopy, the geographic extent has been limited due to data availability and spectrally similar species continue to be difficult to separate. The proposed Hyperspectral Infrared Imager (HyspIRI) space-borne mission, which includes a visible near infrared/shortwave infrared (VSWIR) imaging spectrometer and thermal infrared (TIR) multi-spectral imager, would present an opportunity to improve species discrimination over a much broader scale. Here we evaluate: 1) the capability of VSWIR and/or TIR spectra to discriminate plant species; 2) the accuracy of species classifications within an ecosystem; and 3) the potential for discriminating among species across a range of ecosystems. Simulated HyspIRI imagery was acquired in spring/summer of 2013 spanning from Santa Barbara to Bakersfield, CA with the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and the MODIS/ASTER Airborne Simulator (MASTER) instruments. Three spectral libraries were created from these images: AVIRIS (224 bands from 0.4 - 2.5 µm), MASTER (8 bands from 7.5 - 12 µm), and AVIRIS + MASTER. We used canonical discriminant analysis (CDA) as a dimension reduction technique and then classified plant species using linear discriminant analysis (LDA). Our results show the inclusion of TIR spectra improved species discrimination, but only for plant species with emissivities departing from that of a gray body. Ecosystems with species that have high spectral contrast had higher classification accuracies. Mapping plant species across all ecosystems resulted in a classification with lower accuracies than a single ecosystem due to the complex nature of incorporating more plant species.

EOS Contract Report: The ASTER and MODIS Projects

NASA Technical Reports Server (NTRS)

Slater, P.; Thome, K. (Compiler)

1997-01-01

Three major tasks occupied the group's efforts during this six months. The first was measuring the bidirectional reflectance properties of four reflectance samples provided by NIST. S. Biggar and P. Spyak made these measurements in both the VNIR and SWIR. The second major task was the group's move to a new facility in March. This required that our calibration laboratory and blacklab be disassembled and reassembled in addition to moving offices and other equipment. The third task was the joint vicarious calibration that took place the latter half of June. This campaign included two weeks of laboratory measurements by the RSG and nine days in the field. Other work during the past six months consisted of Science Team support activities including the attendance at meetings related to MODIS and ASTER. In addition, K. Scott continued work on the cross-calibration software package by developing a graphical interface to 6S, an uncertainty analysis code, and an image registration module. M. Sicard used a trip to Cimel in France to change the Cimel TIR radiometer's field of view and then characterized this new field of view. Z. Rouf and Z. Murshalin processed radiance-based data from last summer's Lunar Lake campaign.

Multi-sensor Integration of Space and Ground Observations of Pre-earthquake Anomalies Associated with M6.0, August 24, 2014 Napa, California

NASA Astrophysics Data System (ADS)

Ouzounov, Dimitar; Tramutoli, Valerio; Pulinets, Sergey; Liu, Tiger; Filizzola, Carolina; Genzano, Nicola; Lisi, Mariano; Petrov, Leonid; Kafatos, Menas

2015-04-01

We integrate multiple space-born and ground sensors for monitoring pre-earthquake geophysical anomalies that can provide significant early notification for earthquakes higher than M5.5 worldwide. The latest M6.0 event of August 24, 2014 in South Napa, California generated pre-earthquake signatures during our outgoing tests for California, and an experimental warning was documented about 17 days in advance. We process in controlled environment different satellite and ground data for California (and several other test areas) by using: a) data from the NPOES sensors recording OLR (Outgoing Longwave Radiation) in the infrared; b) 2/GNSS, FORMOSAT (GPS/TEC); c) Earth Observing System assimilation models from NASA; d) ground-based gas observations and meteorological data; e) TIR (Thermal Infrared) data from geostationary satellite (GOES). On Aug 4th, we detected (prospectively) a large anomaly of OLR transient field at the TOA over Northern California. The location was shifted in the northeast direction about 150 km from the Aug 23rd epicentral area. Compared to the reference field of August 2004 to 2014 the hotspot anomaly was the largest energy flux anomaly over the entire continental United States at this time. Based on the temporal and spatial estimates of the anomaly, on August 4th we issued an internal warning for a M5.5+ earthquake in Northern California within the next 1-4 weeks. TIR retrospective analysis showed significant (spatially extended and temporally persistent) sequences of TIR anomalies starting August 1st just in the future epicenter area and approximately in the same area affected by OLR anomalies in the following days. GPS/TEC retrospective analysis based on GIM and TGIM products show anomalies TEC variations 1-3 days, over region north form the Napa earthquake epicenter. The calculated index of atmospheric chemical potential based on the NASA numerical Assimilation weather model GEOS5 indicates for abnormal variations near the epicentral area days before the quake; Our real-time and post-event integration of several atmospheric parameters from satellite and ground observations during the M6.0 on 08.24.2014 in Napa California demonstrated the synergy of related variations of these parameters implying their connection with the earthquake preparation process.

Onboard electrical calibration of the ASTER VNIR

NASA Astrophysics Data System (ADS)

Sakuma, Fumihiro; Kikuchi, Masakuni; Inada, Hitomi

2013-10-01

The Advanced Space-borne Thermal Emission and Reflection Radiometer (ASTER) is one of the five sensors on the NASA's Terra satellite on orbit since December 1999. ASTER consists of three radiometers, the Visible and Near InfraRed (VNIR), the Short-Wave InfraRed (SWIR) and Thermal InfraRed (TIR) whose spatial resolutions are 15 m, 30 m and 90 m, respectively. Unfortunately the SWIR image data are saturated since April 2008 due to the offset rise caused by the cooler temperature rise, but the VNIR and the TIR are taking Earth images of good quality. The VNIR and the TIR experienced responsivity degradation while the SWIR showed little change. From the lamp calibration, Band 1 decreased the most among three VNIR bands and 31% in thirteen years. The VNIR has the electrical calibration mode to check the healthiness of the electrical circuits through the charge coupled device (CCD). Four voltage levels from Line 1 to Line 4, which are from 2.78 V to 3.10 V, are input to the CCD in the onboard calibration sequence and the output digital numbers (DNs) are detected in the images. These input voltages are monitored as telemetry data and have been stable up to now. From the electrical calibration we can check stabilities of the offset, gain ratio and gain stability of the electric circuit. The output level of the Line1 input is close to the offset level which is measured while observing the earth at night. The trend of the Line 1 output is compared to the offset level. They are similar but are not exactly the same. The trend of the even pixel and odd pixel is the same so the saturated offset levels of the odd pixel is corrected by using the even pixel trend. The gain ratio trend shows that the ratio is stable. But the ratio values are different from those measured before launch. The difference comes up to 10% for the Band 2. The correct gain ratio should be applied to the vicarious calibration result because the onboard calibration is measured with the Normal gain whereas the vicarious calibration often measures with the High gain. The cause of the VNIR responsivity degradation is not known but one of the causes might be the change of the electric circuit. The band 3 gain shows 16 % decrease whereas the gain changes of the band 1 and band 2 are 5% to 8%. The responsivity decrease after 1000 days since launch might be controlled by the electric circuit change.

ASTER First Views of Red Sea, Ethiopia - Thermal-Infrared TIR Image monochrome

NASA Image and Video Library

2000-03-11

ASTER succeeded in acquiring this image at night, which is something Visible/Near Infrared VNIR) and Shortwave Infrared (SWIR) sensors cannot do. The scene covers the Red Sea coastline to an inland area of Ethiopia. White pixels represent areas with higher temperature material on the surface, while dark pixels indicate lower temperatures. This image shows ASTER's ability as a highly sensitive, temperature-discerning instrument and the first spaceborne TIR multi-band sensor in history. The size of image: 60 km x 60 km approx., ground resolution 90 m x 90 m approximately. http://photojournal.jpl.nasa.gov/catalog/PIA02452

Assaying Auxin Receptor Activity Using SPR Assays with F-Box Proteins and Aux/IAA Degrons.

PubMed

Quareshy, Mussa; Uzunova, Veselina; Prusinska, Justyna M; Napier, Richard M

2017-01-01

The identification of TIR1 as an auxin receptor combined with advanced biophysical instrumentation has led to the development of real-time activity assays for auxins. Traditionally, molecules have been assessed for auxinic activity using bioassays, and agrochemical compound discovery continues to be based on "spray and pray" technologies. Here, we describe the methodology behind an SPR-based assay that uses TIR1 and related F-box proteins with surface plasmon resonance spectrometry for rapid compound screening. In addition, methods for collecting kinetic binding data and data processing are given so that they may support programs for rational design of novel auxin ligands.

Activities of NIST (National Inst. of Standards and Technology)

NASA Technical Reports Server (NTRS)

1992-01-01

The Radiometric Physics Division of the NIST is responsible for the national standards in radiation thermometry, spectroradiometry, photometry, and spectrophotometry; dissemination of these standards by providing measurement services to customers requiring calibrations of the highest accuracy; and conducting fundamental and applied research to develop the scientific basis for future measurement services. Its relevance to EOS/TIR calibration includes calibrating unknown blackbody for radiance using a well-characterized NIST blackbody source by matching the radiant fluxes with an IR radiometer. The TIR Round Robin is used to verify the calibration of the sources that are used for the absolute radiometric calibration of the individual EOS sensors.

The QWIP Focal Plane Assembly for NASA's Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Jhabvala, M; Choi, K.; Reuter, D.; Sundaram, M.; Jhabvala, C; La, Anh; Waczynski, Augustyn; Bundas, Jason

2010-01-01

The Thermal Infrared Sensor (TIRS) is a QWIP based instrument intended to supplement the Operational Land Imager (OLI) for the Landsat Data Continuity Mission (LDCM). The TIRS instrument is a dual channel far infrared imager with the two bands centered at 10.8[mu]m and 12.0[mu]m. The focal plane assembly (FPA) consists of three 640x512 GaAs Quantum Well Infrared Photodetector (QWIP) arrays precisely mounted to a silicon carrier substrate that is mounted on an invar baseplate. The two spectral bands are defined by bandpass filters mounted in close proximity to the detector surfaces. The focal plane operating temperature is 43K. The QWIP arrays are hybridized to Indigo ISC9803 readout integrated circuits (ROICs). Two varieties of QWIP detector arrays are being developed for this project, a corrugated surface structure QWIP and a grating surface structure QWIP. This paper will describe the TIRS system noise equivalent temperature difference sensitivity as it affects the QWIP focal plane performance requirements: spectral response, dark current, conversion efficiency, read noise, temperature stability, pixel uniformity, optical crosstalk and pixel yield. Additional mechanical constraints as well as qualification through Technology Readiness Level 6 (TRL 6) will also be discussed.

Five centuries of tsunamis and land-level changes in the overlapping rupture area of the 1960 and 2010 Chilean earthquakes

USGS Publications Warehouse

Ely, Lisa L.; Cisternas, Marco; Wesson, Robert L.; Dura, Tina

2014-01-01

A combination of geological and historical records from south-central Chile provides a means to address general questions about the stability of megathrust rupture patches and the range of variation expected among earthquakes and tsunamis along a particular stretch of a subduction zone. The Tirúa River estuary (38.3°S) records four large tsunamis and coseismic land-level changes over the past 450 years within the overlapping rupture zones of the great subduction-zone earthquakes of A.D. 1960 (Mw9.5) and 2010 (Mw 8.8). Sand layers 2 km up the Tirúa River represent the 2010 and 1960 tsunamis and two historical tsunamis, most likely in A.D. 1751 and 1575. Differing land-level changes during these earthquakes likely denote differences in the spatial distribution of slip on the megathrust in both the strike and dip directions within the overlapping rupture zone, with the uplift at Tirúa in 1751 and 2010 probably caused by slip extending farther landward and to greater depth than in 1575 and 1960, which showed subsidence or little change.

Design and Requirements Creep In A Build-To-Print Mission

NASA Technical Reports Server (NTRS)

Peabody, Sharon A.; Otero, Veronica

2017-01-01

Build-to-Print designs, or rebuilds of flight proven designs, are attractive to mission stakeholders, as they give the appearance of minimal engineering development cost, risk, and schedule. The reality is that seldom is a project an exact duplicate of a predecessor. Mission reclassification, improvements in hardware, and science objective changes can all serve as a source of requirements and design creep and have ramifications often not fully anticipated during initial proposals. The Thermal Infrared Sensor Instrument (TIRS) was a late addition to the LandSat-8 program to provide infrared imaging to measure evapotranspiration for water cycle management. To meet the launch requirements for LandSat-8, instrument design life requirements were relaxed, the sensor development expedited, and technology development was minimized. Consequently, TIRS was designed as a higher risk instrument, with less redundancy than an instrument critical to mission success. After the successful LandSat-8 launch in 2013 and instrument performance, a rebuild of the instrument for the next LandSat spacecraft was included in the baseline mission success criteria. This paper discusses the technical challenges encountered during the rebuild of the TIRS-2 (Thermal Infrared Sensor 2) instrument and the resultant impacts on the thermal system design.

Dark and background response stability for the Landsat 8 Thermal Infrared Sensor

USGS Publications Warehouse

Vanderwerff, Kelly; Montanaro, Matthew

2012-01-01

The Thermal Infrared Sensor (TIRS) is a pushbroom sensor that will be a part of the Landsat Data Continuity Mission (LDCM), which is a joint mission between NASA and the USGS. The TIRS instrument will continue to collect the thermal infrared data that are currently being collected by the Thematic Mapper and the Enhanced Thematic Mapper Plus on Landsats 5 and 7, respectively. One of the key requirements of the new sensor is that the dark and background response be stable to ensure proper data continuity from the legacy Landsat instruments. Pre launch testing of the instrument has recently been completed at the NASA Goddard Space Flight Center (GSFC), which included calibration collects that mimic those that will be performed on orbit. These collects include images of a cold plate meant to simulate the deep space calibration source as viewed by the instrument in flight. The data from these collects give insight into the stability of the instrument’s dark and background response, as well as factors that may cause these responses to vary. This paper quantifies the measured background and dark response of TIRS as well as its stability.

Non-canonical mechanism for translational control in bacteria: synthesis of ribosomal protein S1

PubMed Central

Boni, Irina V.; Artamonova, Valentina S.; Tzareva, Nina V.; Dreyfus, Marc

2001-01-01

Translation initiation region (TIR) of the rpsA mRNA encoding ribosomal protein S1 is one of the most efficient in Escherichia coli despite the absence of a canonical Shine–Dalgarno-element. Its high efficiency is under strong negative autogenous control, a puzzling phenomenon as S1 has no strict sequence specificity. To define sequence and structural elements responsible for translational efficiency and autoregulation of the rpsA mRNA, a series of rpsA′–′lacZ chromosomal fusions bearing various mutations in the rpsA TIR was created and tested for β-galactosidase activity in the absence and presence of excess S1. These in vivo results, as well as data obtained by in vitro techniques and phylogenetic comparison, allow us to propose a model for the structural and functional organization of the rpsA TIR specific for proteobacteria related to E.coli. According to the model, the high efficiency of translation initiation is provided by a specific fold of the rpsA leader forming a non-contiguous ribosome entry site, which is destroyed upon binding of free S1 when it acts as an autogenous repressor. PMID:11483525

The QWIP Focal Plane Assembly for NASA's Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Jhabvala, M.; Reuter, D.; Choi, K.; Sundaram, M.; Jhabvala, C.; La, A.; Waczynski, A.; Bundas, J.

2011-01-01

The Thermal Infrared Sensor (TIRS) is a QWIP based instrument intended to supplement the Operational Land Imager (OLI) for the Landsat Data Continuity Mission (LDCM). The TIRS instrument is a dual channel far infrared imager with the two bands centered at 10.8 m and 12.0 m. The focal plane assembly (FPA) consists of three 640x512 GaAs Quantum Well Infrared Photodetector (QWIP) arrays precisely mounted to a silicon carrier substrate that is mounted on an invar baseplate. The two spectral bands are defined by bandpass filters mounted in close proximity to the detector surfaces. The focal plane operating temperature is 43K. The QWIP arrays are hybridized to Indigo ISC9803 readout integrated circuits (ROICs). Two varieties of QWIP detector arrays are being developed for this project, a corrugated surface structure QWIP and a grating surface structure QWIP. This paper will describe the TIRS system noise equivalent temperature difference sensitivity as it affects the QWIP focal plane performance requirements: spectral response, dark current, conversion efficiency, read noise, temperature stability, pixel uniformity, optical crosstalk and pixel yield. Additional mechanical constraints as well as qualification through Technology Readiness Level 6 (TRL 6) will also be discussed.

Thermal Infrared Sensor (TIRS) Instrument Thermal Subsystem Design and Lessons Learned

NASA Technical Reports Server (NTRS)

Otero, Veronica; Mosier, Carol; Neuberger, David

2013-01-01

The Thermal Infrared Sensor (TIRS) is one of two instruments on the Landsat Data Continuity Mission (LDCM), which is scheduled to launch in February of 2013. The TIRS instrument was officially added to the mission later in the flow, which led to a highly aggressive schedule that became one of the main drivers during instrument development. The thermal subsystem design of the TIRS Sensor Unit is comprised of five thermal zones which range in temperature from less than 43 Kelvin to 330 Kelvin. Most zones are proportional heater controlled, and all are within a volume of 35 cu.ft. A two-stage cryocooler is used to cool the "cold stage" including three QWIP detectors to less than 43 Kelvin, and cool the "warm stage" to 105 Kelvin. The excess power dissipation from the cryocooler is rejected via ammonia transport heat pipes to a dedicated Cryocooler Radiator with embedded ammonia heat pipes. The cryogenic subsystem includes a series of shells used to radiatively and conductively isolate the cold stage from the warmer surroundings. The Optical System (telescope) is passively cooled to 180-190 Kelvin using a "thermal link" (comprised of a Flexible Conductive Thermal Strap and an APG Bar) which couples the telescope stage to a dedicated radiator with embedded ethane heat pipes. The Scene Select Mechanism, which is responsible for moving the Scene Select Mirror to three distinct positions (including Nadir, Space, and On-board Black Body Calibrator pointing), runs nominally at 278 Kelvin and is thermally isolated from the cryogenic thermal zones. The On-board Black Body Calibrator requires a dedicated radiator which allows for a temperature range of 260-330 Kelvin at the Source. The detectors are powered by the FPE Box, which is mounted to the nadir external surface of the composite honeycomb structure. There are two additional electronics boxes which are wet-mounted directly to the spacecraft shear panel, the Main Electronics Box and Cryocooler Electronics Box; thermal control of these boxes is the responsibility of Orbital Sciences Corporation, the spacecraft developer. The TIRS thermal subsystem design was successfully verified during months of testing campaign, from component & subsystem level to two instrument-level thermal vacuum tests. The Instrument, despite an aggressive schedule, was delivered to the spacecraft vendor in February of 2012 and is currently undergoing the final stages of spacecraft environmental testing in preparation for launch.

All-weather Land Surface Temperature Estimation from Satellite Data

NASA Astrophysics Data System (ADS)

Zhou, J.; Zhang, X.

2017-12-01

Satellite remote sensing, including the thermal infrared (TIR) and passive microwave (MW), provides the possibility to observe LST at large scales. For better modeling the land surface processes with high temporal resolutions, all-weather LST from satellite data is desirable. However, estimation of all-weather LST faces great challenges. On the one hand, TIR remote sensing is limited to clear-sky situations; this drawback reduces its usefulness under cloudy conditions considerably, especially in regions with frequent and/or permanent clouds. On the other hand, MW remote sensing suffers from much greater thermal sampling depth (TSD) and coarser spatial resolution than TIR; thus, MW LST is generally lower than TIR LST, especially at daytime. Two case studies addressing the challenges mentioned previously are presented here. The first study is for the development of a novel thermal sampling depth correction method (TSDC) to estimate the MW LST over barren land; this second study is for the development of a feasible method to merge the TIR and MW LSTs by addressing the coarse resolution of the latter one. In the first study, the core of the TSDC method is a new formulation of the passive microwave radiation balance equation, which allows linking bulk MW radiation to the soil temperature at a specific depth, i.e. the representative temperature: this temperature is then converted to LST through an adapted soil heat conduction equation. The TSDC method is applied to the 6.9 GHz channel in vertical polarization of AMSR-E. Evaluation shows that LST estimated by the TSDC method agrees well with the MODIS LST. Validation is based on in-situ LSTs measured at the Gobabeb site in western Namibia. The results demonstrate the high accuracy of the TSDC method: it yields a root-mean squared error (RMSE) of 2 K and ignorable systematic error over barren land. In the second study, the method consists of two core processes: (1) estimation of MW LST from MW brightness temperature and (2) three-time-scale decomposition of LST. The method is applied to two MW sensors (i.e. AMSR-E and AMSR2) and MODIS in northeast China and its surrounding area, with dominating land covers of forest and cropland. By comparing against the in-situ LST and surface air temperature, we find the merged LST has similar accuracy to the MODIS LST in version 6 and good image quality.

Surface temperature monitoring by integrating satellite data and ground thermal camera network on Solfatara Crater in Campi Flegrei volcanic area (Italy)

NASA Astrophysics Data System (ADS)

Buongiorno, M. F.; Musacchio, M.; Silvestri, M.; Vilardo, G.; Sansivero, F.; caPUTO, T.; bellucci Sessa, E.; Pieri, D. C.

2017-12-01

Current satellite missions providing imagery in the TIR region at high spatial resolution offer the possibility to estimate the surface temperature in volcanic area contributing in understanding the ongoing phenomena to mitigate the volcanic risk when population are exposed. The Campi Flegrei volcanic area (Italy) is part of the Napolitan volcanic district and its monitored by INGV ground networks including thermal cameras. TIRS on LANDSAT and ASTER on NASA-TERRA provide thermal IR channels to monitor the evolution of the surface temperatures on Campi Flegrei area. The spatial resolution of the TIR data is 100 m for LANDSAT8 and 90 m for ASTER, temporal resolution is 16 days for both satellites. TIRNet network has been developed by INGV for long-term volcanic surveillance of the Flegrei Fields through the acquisition of thermal infrared images. The system is currently comprised of 5 permanent stations equipped with FLIR A645SC thermo cameras with a 640x480 resolution IR sensor. To improve the systematic use of satellite data in the monitor procedures of Volcanic Observatories a suitable integration and validation strategy is needed, also considering that current satellite missions do not provide TIR data with optimal characteristics to observe small thermal anomalies that may indicate changes in the volcanic activity. The presented procedure has been applied to the analysis of Solfatara Crater and is based on 2 different steps: 1) parallel processing chains to produce ground temperature data both from satellite and ground cameras; 2) data integration and comparison. The ground cameras images generally correspond to views of portion of the crater slopes characterized by significant thermal anomalies due to fumarole fields. In order to compare the satellite and ground cameras it has been necessary to take into account the observation geometries. All thermal images of the TIRNet have been georeferenced to the UTM WGS84 system, a regular grid of 30x30 meters has been created to select polygonal areas corresponding only to the cells containing the georeferenced TIR images acquired by different TIRnet stations. Preliminary results of this integration approach has been analyzed in order to produce systematic reports to the Italian Civil Protection for the Napolitan Volcanoes.

The VLA-COSMOS 3 GHz Large Project: The infrared-radio correlation of star-forming galaxies and AGN to z ≲ 6

NASA Astrophysics Data System (ADS)

Delhaize, J.; Smolčić, V.; Delvecchio, I.; Novak, M.; Sargent, M.; Baran, N.; Magnelli, B.; Zamorani, G.; Schinnerer, E.; Murphy, E. J.; Aravena, M.; Berta, S.; Bondi, M.; Capak, P.; Carilli, C.; Ciliegi, P.; Civano, F.; Ilbert, O.; Karim, A.; Laigle, C.; Le Fèvre, O.; Marchesi, S.; McCracken, H. J.; Salvato, M.; Seymour, N.; Tasca, L.

2017-06-01

We examine the behaviour of the infrared-radio correlation (IRRC) over the range 0

A comparative pH-dissolution profile study of selected commercial levothyroxine products using inductively coupled plasma mass spectrometry.

PubMed

Pabla, Dimple; Akhlaghi, Fatemeh; Zia, Hossein

2009-05-01

Levothyroxine (T4) is a narrow therapeutic index drug with classic bioequivalence problem between various available products. Dissolution of a drug is a crucial step in its oral absorption and bioavailability. The dissolution of T4 from three commercial solid oral dosage forms: Synthroid (SYN), generic levothyroxine sodium by Sandoz Inc. (GEN) and Tirosint (TIR) was studied using a sensitive ICP-MS assay. All the three products showed variable and pH-dependent dissolution behaviors. The absence of surfactant from the dissolution media decreased the percent T4 dissolved for all the three products by 26-95% (at 30 min). SYN dissolution showed the most pH dependency, whereas GEN and TIR showed the fastest and highest dissolution, respectively. TIR was the most consistent one, and was minimally affected by pH and/or by the presence of surfactant. Furthermore, dissolution of T4 decreased considerably with increase in the pH, which suggests a possible physical interaction in patients concurrently on T4 and gastric pH altering drugs, such as proton pump inhibitors. Variable dissolution of T4 products can, therefore, impact the oral absorption and bioavailability of T4 and may result in bioequivalence problems between various available products.

Combining airborne thermal infrared images, radium isotopes and radon to study Submarine Groundwater Discharge along the French Mediterranean coastline (Côte Bleue)}

NASA Astrophysics Data System (ADS)

Bejannin, Simon; Tamborski, Joseph; Souhaut, Marc; Radakovitch, Olivier; Claude, Christelle; Stieglitz, Thomas; Crispi, Olivier; Pujo-Pay, Mireille; Conan, Pascal; Caparros, Jocelyne; Heimburger, Lars-Eric; Petrova, Macha; Le Roy, Emilie; Lacan, François; van Beek, Pieter

2017-04-01

Submarine Groundwater Discharge (SGD) is now recognized as an important vector for many chemical elements that may impact the quality of the coastal environment and marine ecosystems. Although these fluxes have been investigated in many places of the world, few studies have been conducted along the French Mediterranean coastline. In this study, we report airborne thermal infrared (TIR) images that allowed us to locate several freshwater inputs along the "Côte Bleue" located west of the city of Marseille. We used salinity, radon and radium isotopes to confirm that the TIR signal could be related to SGD. Radon was analyzed in situ along the coastline on board a rubber boat. The four radium isotopes (223Ra, 224Ra, 226Ra, 228Ra) were analyzed in samples collected in the coastal waters characterized by a strong TIR signal, as well as along transects conducted on board RV Antedon II between the coast and offshore (between 200 m and 8 km). We also analyzed nutrient (nitrates, phosphates and silicates) and mercury concentrations in the water samples. Radium isotopes were thus used to quantify SGD fluxes and to determine the fluxes of nutrients and mercury associated with SGD along this coastline.

Immunogenicity of a plant-derived edible chimeric EspA, Intimin and Tir of Escherichia coli O157:H7 in mice.

PubMed

Amani, Jafar; Mousavi, Seyed Latif; Rafati, Sima; Salmanian, Ali Hatef

2011-04-01

Transgenic plants offer the possibility to produce and deliver an oral immunogen on a large-scale with low production costs and minimal purification or enrichment. Cattles are important reservoirs of Escherichia coli O157:H7 and developing a specific immunity in animals would be invaluable. Intimin, Tir, and EspA proteins are the virulence factors expressed by LEE locus of enterohemorrhagic E. coli. We hypothesized that the chimeric recombinant forms of these effectors delivered as an edible-base vaccine would reduce colonization of bacteria in mice. A synthetic gene (eit) composed of espA (e), eae (i) and tir (t) attached by linkers was constructed. The gene was codon optimized and cloned into plant expression vectors adjacent to CaMV35S and FAE promoters for expression in tobacco and canola plants. Of total soluble protein 0.2% and 0.3% (in average) were detected in transgenic tobacco leaves and canola seeds respectively. Mice immunized either subcutaneously or orally with recombinant EIT and challenged with E. coli O157:H7 significantly exhibited reduced bacterial shedding. Application of transgenic plants containing trivalent immunogen is an effective tool for protection against E. coli O157:H7. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Assembly of Landsat's TIRS Instrument

NASA Image and Video Library

2012-02-14

Aleksandra Bogunovic (left) and Veronica Otero (right) look on while Pete Steigner (in the middle) adds a flow tube that will make sure that nitrogen gas flows through the instrument while it's being shipped. The gas will keep contaminating particles from infiltrating the instrument. The Thermal Infrared Sensor (TIRS) will fly on the next Landsat satellite, the Landsat Data Continuity Mission (LDCM). TIRS was built on an accelerated schedule at NASA's Goddard Space Flight Center, Greenbelt, Md. and will now be integrated into the LDCM spacecraft at Orbital Science Corp. in Gilbert, Ariz. The Landsat Program is a series of Earth observing satellite missions jointly managed by NASA and the U.S. Geological Survey. Landsat satellites have been consistently gathering data about our planet since 1972. They continue to improve and expand this unparalleled record of Earth's changing landscapes for the benefit of all. For more information on Landsat, visit: www.nasa.gov/landsat Credit: NASA/GSFC/Rebecca Roth NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

BIG: a calossin-like protein required for polar auxin transport in Arabidopsis

PubMed Central

Gil, Pedro; Dewey, Elizabeth; Friml, Jiri; Zhao, Yunde; Snowden, Kimberley C.; Putterill, Jo; Palme, Klaus; Estelle, Mark; Chory, Joanne

2001-01-01

Polar auxin transport is crucial for the regulation of auxin action and required for some light-regulated responses during plant development. We have found that two mutants of Arabidopsis—doc1, which displays altered expression of light-regulated genes, and tir3, known for its reduced auxin transport—have similar defects and define mutations in a single gene that we have renamed BIG. BIG is very similar to the Drosophila gene Calossin/Pushover, a member of a gene family also present in Caenorhabditis elegans and human genomes. The protein encoded by BIG is extraordinary in size, 560 kD, and contains several putative Zn-finger domains. Expression-profiling experiments indicate that altered expression of multiple light-regulated genes in doc1 mutants can be suppressed by elevated levels of auxin caused by overexpression of an auxin biosynthetic gene, suggesting that normal auxin distribution is required to maintain low-level expression of these genes in the dark. Double mutants of tir3 with the auxin mutants pin1, pid, and axr1 display severe defects in auxin-dependent growth of the inflorescence. Chemical inhibitors of auxin transport change the intracellular localization of the auxin efflux carrier PIN1 in doc1/tir3 mutants, supporting the idea that BIG is required for normal auxin efflux. PMID:11485992

Identification, functional characterization and expression pattern of myeloid differentiation factor 88 (MyD88) in Sepiella japonica.

PubMed

Huo, Liping; Bao, Miaomiao; Lv, Zhenming; Chi, Changfeng; Wang, Tianming; Liu, Huihui

2018-05-01

Myeloid differentiation factor 88 (MyD88) is an adaptor protein involved in the interleukin-1 receptor and Toll-like receptor-induced activation of nuclear factor-κB (NF-κB). In this study a novel isoform of MyD88 in Sepiella japonica (SjMyD88) was cloned and functionally characterized (GenBank accession no. AQY56781.1). The complete cDNA sequence of SjMyD88 was 1912 bp and contained a 1017 bp open reading frame encoding 338 amino acid residues, which was similar to its mollusk orthologues in the length. BLASTp analysis suggested the deduced amino acids sequence of SjMyD88 shared high identity to the known MyD88, for instance, 64% identity with Octopus bimaculoides. Sequence analysis revealed two conserved domains, the N-terminal DD and the C-terminal TIR domain appeared in SjMyD88, which was consistent with MyD88 proteins from other species. The fusion expression of SjMyD88 and green fluorescent protein (EGFP) in HEK293 cells was conducted and cytoplasm localization was detected. Meanwhile, the TIR-pmCherry fusion protein showed red fluorescence and mainly distributed in the cytoplasm. After cotransfection MyD88-EGFP and TIR-pmCherry red obviously overlapped and changed to yellowish green. The results suggested that there was the interaction between homologous TIR-pmcherry and MyD88-EGFP. Tissues expression profiles analysis showed that SjMyD88 ubiquitously expressed in all tested tissues with the highest expression in the gills and livers except reproductive related tissue, and it was significantly induced in livers under LPS stress. These data provide insight into the roles of SjMyD88 in the TLR signaling pathway of S. japonica in response to pathogenic bacteria. Copyright © 2018. Published by Elsevier Ltd.

Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation.

PubMed

López-Malo, María; García-Rios, Estéfani; Melgar, Bruno; Sanchez, Monica R; Dunham, Maitreya J; Guillamón, José Manuel

2015-07-22

Wine produced at low temperature is often considered to improve sensory qualities. However, there are certain drawbacks to low temperature fermentations: e.g. low growth rate, long lag phase, and sluggish or stuck fermentations. Selection and development of new Saccharomyces cerevisiae strains well adapted at low temperature is interesting for future biotechnological applications. This study aimed to select and develop wine yeast strains that well adapt to ferment at low temperature through evolutionary engineering, and to decipher the process underlying the obtained phenotypes. We used a pool of 27 commercial yeast strains and set up batch serial dilution experiments to mimic wine fermentation conditions at 12 °C. Evolutionary engineering was accomplished by using the natural yeast mutation rate and mutagenesis procedures. One strain (P5) outcompeted the others under both experimental conditions and was able to impose after 200 generations. The evolved strains showed improved growth and low-temperature fermentation performance compared to the ancestral strain. This improvement was acquired only under inositol limitation. The transcriptomic comparison between the evolved and parental strains showed the greatest up-regulation in four mannoprotein coding genes, which belong to the DAN/TIR family (DAN1, TIR1, TIR4 and TIR3). Genome sequencing of the evolved strain revealed the presence of a SNP in the GAA1 gene and the construction of a site-directed mutant (GAA1 (Thr108)) in a derivative haploid of the ancestral strain resulted in improved fermentation performance. GAA1 encodes a GPI transamidase complex subunit that adds GPI, which is required for inositol synthesis, to newly synthesized proteins, including mannoproteins. In this study we demonstrate the importance of inositol and mannoproteins in yeast adaptation at low temperature and the central role of the GAA1 gene by linking both metabolisms.

Retrieval of volcanic ash composition and particle size using high spatial resolution satellite data

NASA Astrophysics Data System (ADS)

Williams, D.; Ramsey, M. S.

2017-12-01

Volcanic ash plumes are a complex mixture of glass, mineral and lithic fragments in suspension with multiple gas species. These plumes are rapidly injected into the atmosphere, traveling thousands of kilometers from their source and affecting lives and property. One important use of satellite-based data has been to monitor volcanic plumes and their associated hazards. For distal plumes, the transmissive properties of volcanic ash in the thermal infrared (TIR) region allows the effective radii, composition, and density to be determined using approaches such as radiative transfer modelling. Proximal to the vent, however, the plume remains opaque, rendering this method invalid. We take a new approach to proximal plume analysis by assuming the plume's upper layer behaves spectrally as a solid surface in the TIR, due to the temperature and density of the plume soon after ejection from the vent. If this hypothesis is true, linear mixing models can be employed together with an accurate spectral library to compute both the particle size and petrology of every plume pixel. This method is being applied to high spatial resolution TIR data from the ASTER sensor using the newly developed ASTER Volcanic Ash Library (AVAL). AVAL serves as the spectral end-member suite from which to model plume data of 4 volcanoes: Chaitén, Puyehue-Cordón Caulle, Sakurajima and Soufrière Hills Volcano (SHV). Preliminary results indicate that this approach may be valid. The Sakurajima and SHV AVAL spectra provide an excellent fit to the ASTER data, whereas crushed high silica glass served as an appropriate end-member for both Chaitén and Puyehue-Cordón Caulle. In all cases, the best-fit size fractions are < 45 µm. Analysis of the proximal plume is essential in understanding the volcanic processes occurring within the vent. This study provides unprecedented detail of this region of the plume, further demonstrating the need for the continuation of high spatial resolution TIR satellite missions.

Molecular analysis of a novel Toll/interleukin-1 receptor (TIR)-domain containing virulence protein of Y. pseudotuberculosis among Far East scarlet-like fever serotype I strains.

PubMed

Nörenberg, Dominik; Wieser, Andreas; Magistro, Giuseppe; Hoffmann, Christiane; Meyer, Christian; Messerer, Maxim; Schubert, Sören

2013-12-01

Pathogenicity of Yersinia pseudotuberculosis is determined by an arsenal of virulence factors. Particularly, the Yersinia outer proteins (Yops) and the Type III secretion system (T3SS) encoded on the pYV virulence plasmid are required for Yersinia pathogenicity. A specific group of Y. pseudotuberculosis, responsible for the clinical syndrome described as Far East scarlet-like fever (FESLF), is known to have an altered virulence gene cluster. Far East strains cause unique clinical symptoms for which the pYV virulence plasmid plays apparently a rather secondary role. Here, we characterize a previously unknown protein of Y. pseudotuberculosis serotype I strains (TcpYI) which can be found particularly among the FESLF strain group. The TcpYI protein shares considerable sequence homology to members of the Toll/IL-1 receptor family. Bacterial TIR domain containing proteins (Tcps) interact with the innate immune system by TIR-TIR interactions and subvert host defenses via individual, multifaceted mechanisms. In terms of virulence, it appears that the TcpYI protein of Y. pseudotuberculosis displays its own virulence phenotype compared to the previously characterized bacterial Tcps. Our results clearly demonstrate that TcpYI increases the intracellular survival of the respective strains in vitro. Furthermore, we show here that the intracellular survival benefit of the wild-type strain correlates with an increase in tcpYI gene expression inside murine macrophages. In support of this, we found that TcpYI enhances the survival inside the spleens of mice in a mouse model of peritonitis. Our results may point toward involvement of the TcpYI protein in inhibition of phagocytosis, particularly in distinct Y. pseudotuberculosis strains of the FESLF strain group where the pYV virulence plasmid is absent. Copyright © 2013 Elsevier GmbH. All rights reserved.

Modulation of IL-33/ST2-TIR and TLR signalling pathway by fingolimod and analogues in immune cells.

PubMed

Rüger, K; Ottenlinger, F; Schröder, M; Zivković, A; Stark, H; Pfeilschifter, J M; Radeke, H H

2014-12-01

For the immune modulatory drug fingolimod (FTY720), lymphocyte sequestration has been extensively studied and accepted as mode of action. Further, direct effects on immune cell signalling are incompletely understood. Herein, we used the parent drug and newly synthesized analogues to investigate their effects on dendritic cell (DC) calcium signalling and on Th1, Th2 and Th17 responses. DC calcium signalling was determined with a single cell-based confocal assay and IL-33/ST2-TIR Th2-like response with ST2-transduced EL4-6.1 thymoma cells. The Th1/Th17 responses were examined with a LPS/TLR-enhanced antigen presentation assay with OVA-TCRtg CD4 and CD8 spleen cells. Our results revealed a comparable influence of fingolimod and S1P on intracellular calcium level in DC, while an oxy-derivative of fingolimod exhibited an EC50 of 3.3 nm, being 14 times more potent than FTY720-P. The IL-33/ST2-TIR Th2-like response in ST2-EL4 cells was inhibited by fingolimod and analogues at varying degrees. Using the OVA-TCRtg LPS/TLR-enhanced spleen cell assay, we found that fingolimod inhibited both IL-17 and IFN-γ production. In contrast, fingolimod phosphate failed to decrease Th1 cytokines. Interestingly, the effects of the parent compound fingolimod were modulated by the PP2A inhibitor okadaic acid, thus suggesting PP2A as relevant intracellular target. These studies describe detailed immune-modulating properties of fingolimod, including interference with a prototypical Th2 response via IL-33/ST2-TIR. Moreover, differential effects of fingolimod versus its phosphorylated derivative on TLR-activated and antigen-dependent Th1 activation suggest PP2A as an additional target of fingolimod immune therapy. Together with the analogues tested, these data may guide the development of more specific fingolimod derivatives. © 2014 John Wiley & Sons Ltd.

Evaluation of transmission infrared spectroscopy and digital and optical refractometers to identify low immunoglobulin G concentrations in alpaca serum

PubMed Central

Elsohaby, Ibrahim; Burns, Jennifer J.; Riley, Christopher B.; McClure, J. Trenton

2017-01-01

This study aimed to evaluate the digital Brix and optical serum total protein (STP) refractometers for measuring concentrations of serum immunoglobulin G (IgG) in alpacas and compare them to IgG concentrations measured by the reference method of radial immunodiffusion (RID) assay. The appropriate cutoff point for Brix and STP refractometers and the transmission infrared (TIR) spectroscopy method was determined for low IgG concentrations (< 10 g/L). Serum samples were collected from alpacas (N = 169) and tested by both refractometers. The correlation between Brix % and STP was high [correlation coefficient (r) = 0.99]. However, the correlation coefficients between Brix % and STP with serum RID-IgG concentrations were only 0.56 and 0.55, respectively. Twenty-one (12.4%) of 169 alpaca serum samples had IgG concentrations of < 10 g/L. Using receiver operator characteristic curve (ROC) analysis, the optimal cutoff points for the TIR assay, digital Brix, and optical STP refractometers for assessing low IgG (RID < 10 g/L) were 13 g/L, 8.8%, and 50 g/L, respectively. The TIR assay showed higher sensitivity (Se = 95.2%) and specificity (Sp = 96.8%) than either the digital Brix (Se = 90.5% and Sp = 65.5%) or optical STP (Se = 81% and Sp = 73.7%) refractometers for assessing alpacas with low IgG. In conclusion, the Brix and STP refractometers lack accuracy in measuring alpaca IgG concentrations, but may be useful for screening animals for low serum IgG. However, the TIR assay with a cutoff point of 13 g/L was more appropriate for identifying low IgG than either refractometer. Another study that focuses on neonatal crias is recommended in order to evaluate the usefulness of these assays for field diagnosing of failure of transfer of passive immunity (FTPI). PMID:28725112

Using thermal infrared (TIR) data to characterize dust sources, dust fall and the linkage to climate in the Middle East

NASA Astrophysics Data System (ADS)

Mohammad, R.; Ramsey, M.; Scheidt, S. P.

2010-12-01

Prior to mineral dust deposition affecting albedo, aerosols can have direct and indirect effects on local to regional scale climate by changing both the shortwave and longwave radiative forcing. In addition, mineral dust causes health hazards, such as respiratory-related illnesses and deaths, loss of agricultural soil, and safety hazards to aviation and motorists due to reduced visibility. Previous work utilized satellite and ground-based TIR data to describe the direct longwave radiative effect of the Saharan Air Layer (SAL) over the Atlantic Ocean originating from dust storms in the Western Sahara. TIR emission spectroscopy was used to identify the spectral absorption features of that dust. The current research focuses on Kuwait and utilizes a comprehensive set of spatial, analytical and geological tools to characterize dust emissions and its radiative effects. Surface mineral composition maps for the Kuwait region were created using ASTER images and GIS datasets in order to identify the possible sources of wind-blown dust. Backward trajectory analysis using the Hybrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) model suggests the dust source areas were located in Iraq, Syria, Jordan and Saudi Arabia. Samples collected from two dust storms (May and July 2010) were analyzed for their mineral composition and to validate the dust source areas identified by the modeling and remote sensing analysis. These air fall dust samples were collected in glass containers on a 13 meter high rooftop in the suburb of Rumaithiya in Kuwait. Additional samples will be collected to expand the analysis and their chemical compositions will be characterized by a combination of laboratory X-ray fluorescence (XRF), Scanning Electron Microscopy (SEM) and TIR emission spectroscopy. The overarching objective of this ongoing research is to both characterize the effects of mineral dust on climate as well as establish a predictive tool that can identify dust storm sources and potentially aid in establishing a more accurate prediction and warning system in the Middle East region.

High spatio-temporal resolution observations of crater-lake temperatures at Kawah Ijen volcano, East Java, Indonesia

USGS Publications Warehouse

Lewicki, Jennifer L.; Corentin Caudron,; Vincent van Hinsberg,; George Hilley,

2016-01-01

The crater lake of Kawah Ijen volcano, East Java, Indonesia, has displayed large and rapid changes in temperature at point locations during periods of unrest, but measurement techniques employed to-date have not resolved how the lake’s thermal regime has evolved over both space and time. We applied a novel approach for mapping and monitoring variations in crater-lake apparent surface (“skin”) temperatures at high spatial (~32 cm) and temporal (every two minutes) resolution at Kawah Ijen on 18 September 2014. We used a ground-based FLIR T650sc camera with digital and thermal infrared (TIR) sensors from the crater rim to collect (1) a set of visible imagery around the crater during the daytime and (2) a time series of co-located visible and TIR imagery at one location from pre-dawn to daytime. We processed daytime visible imagery with the Structure-from-Motion photogrammetric method to create a digital elevation model onto which the time series of TIR imagery was orthorectified and georeferenced. Lake apparent skin temperatures typically ranged from ~21 to 33oC. At two locations, apparent skin temperatures were ~ 4 and 7 oC less than in-situ lake temperature measurements at 1.5 and 5 m depth, respectively. These differences, as well as the large spatio-temporal variations observed in skin temperatures, were likely largely associated with atmospheric effects such as evaporative cooling of the lake surface and infrared absorption by water vapor and SO2. Calculations based on orthorectified TIR imagery thus yielded underestimates of volcanic heat fluxes into the lake, whereas volcanic heat fluxes estimated based on in-situ temperature measurements (68 to 111 MW) were likely more representative of Kawah Ijen in a quiescent state. The ground-based imaging technique should provide a valuable tool to continuously monitor crater-lake temperatures and contribute insight into the spatio-temporal evolution of these temperatures associated with volcanic activity.

Evaluation of transmission infrared spectroscopy and digital and optical refractometers to identify low immunoglobulin G concentrations in alpaca serum.

PubMed

Elsohaby, Ibrahim; Burns, Jennifer J; Riley, Christopher B; McClure, J Trenton

2017-07-01

This study aimed to evaluate the digital Brix and optical serum total protein (STP) refractometers for measuring concentrations of serum immunoglobulin G (IgG) in alpacas and compare them to IgG concentrations measured by the reference method of radial immunodiffusion (RID) assay. The appropriate cutoff point for Brix and STP refractometers and the transmission infrared (TIR) spectroscopy method was determined for low IgG concentrations (< 10 g/L). Serum samples were collected from alpacas (N = 169) and tested by both refractometers. The correlation between Brix % and STP was high [correlation coefficient (r) = 0.99]. However, the correlation coefficients between Brix % and STP with serum RID-IgG concentrations were only 0.56 and 0.55, respectively. Twenty-one (12.4%) of 169 alpaca serum samples had IgG concentrations of < 10 g/L. Using receiver operator characteristic curve (ROC) analysis, the optimal cutoff points for the TIR assay, digital Brix, and optical STP refractometers for assessing low IgG (RID < 10 g/L) were 13 g/L, 8.8%, and 50 g/L, respectively. The TIR assay showed higher sensitivity (Se = 95.2%) and specificity (Sp = 96.8%) than either the digital Brix (Se = 90.5% and Sp = 65.5%) or optical STP (Se = 81% and Sp = 73.7%) refractometers for assessing alpacas with low IgG. In conclusion, the Brix and STP refractometers lack accuracy in measuring alpaca IgG concentrations, but may be useful for screening animals for low serum IgG. However, the TIR assay with a cutoff point of 13 g/L was more appropriate for identifying low IgG than either refractometer. Another study that focuses on neonatal crias is recommended in order to evaluate the usefulness of these assays for field diagnosing of failure of transfer of passive immunity (FTPI).

Molecular and agro-morphological characterization of ancient wheat landraces of turkey.

PubMed

Gurcan, Kahraman; Demirel, Fatih; Tekin, Mehmet; Demirel, Serap; Akar, Taner

2017-11-14

Turkey is one of the important gene centers for many crop species. In this research, some ancient wheats such as tetraploid and diploid hulled wheats together with hexaploid tir wheats (Triticum aestivum ssp. leucospermum Korn.) landraces mainly adapted to harsh winter conditions of Eastern Anatolian region of Turkey were characterized at agro-morphological and molecular level. Totally 50 hulled wheat population from Kastamonu, Konya and Kayseri provinces and 15 tir wheats from Kars provinces of Turkey were in-situ collected for characterization in 2013. Some quantitative and qualitative traits of each population were determined. Twenty three hulled wheat population collected from Kastamonu province were distinguished into nine emmer and 14 einkorn wheats at morphological level. Additionally, Konya, Kayseri and Kars population were characterized as einkorn, emmer and tir wheat, respectively. Among the evaluated traits, protein ratios of hulled wheats were strikingly higher than registered cultivars. All the populations were also examined by molecular level by using fluorescently labelled 11 polymorphic SSRs primers. The primers exhibited 104 bands, ranging from 6 to 16 with a mean value 9.45 per loci. The clustering analysis separated the germplasm into two clusters which were also divided into two subclusters based on genetic similarity coefficient. Sixty-five population and five checks were analyzed to estimate mean number of alleles (N), expected and observed heterozygoties (He and Ho), polymorphism information content (PIC), Wright fix index (F), genetic deviation from Hardy-Weinberg expectation (Fit-Fis) and genetic variation (Fst) were determined as 9.45, 0.71, 0.07, 0.67, 0.90, 0.39, 0.87 and 0.39, respectively. A clear genetic deviation from Hardy - Weinberg expectation was observed among population in particular. These results showed considerable genetic variation among landraces rather than within population. These molecular information has revealed genetically diverse einkorn, emmer wheat and tir wheat population could be used as parents for further breeding studies in both Turkey and abroad. Furthermore, the molecular analysis has also generally discriminated the germplasm into ploidy level.

Frustrated Total Internal Reflection: A Simple Application and Demonstration.

ERIC Educational Resources Information Center

Zanella, F. P.; Magalhaes, D. V.; Oliveira, M. M.; Bianchi, R. F.; Misoguti, L.; Mendonca, C. R.

2003-01-01

Describes the total internal reflection process that occurs when the internal angle of incidence is equal to or greater than the critical angle. Presents a demonstration of the effect of frustrated total internal reflection (FTIR). (YDS)

Directional emissivity and reflectance: dependence on emergence angle

NASA Astrophysics Data System (ADS)

Maturilli, Alessandro; Helbert, Jörn

2017-04-01

Dependence of laboratory measured emissivity spectra from the emergence angle is a subject that still needs a lot of investigations to be fully understood. Most of the previous work is based on reflectance measurements in the VIS-NIR spectral region and on emissivity measurements of flat, solid surfaces (mainly metals), which are not directly applicable to the analysis of remote sensing data. Small bodies in particular (c.f. asteroids Itokawa and 1999JU3, the respective targets of JAXA Hayabusa and Hayabusa 2 missions) have a very irregular surface; hence the spectra from those rough surfaces are difficult to compare with laboratory spectra, where the observing geometry is always close to "nadir". At the Planetary Emissivity Laboratory (PEL) of the German Aerospace Center (DLR) we have set-up a series of spectral measurements to investigate this problem in the 1 - 16 µm spectral region. We measured the emissivity for two asteroid analog materials (meteorite Millbillillie and a synthetic enstatite) in vacuum and under purged air, at surface temperature of 100°C, for emergence angles of 0°, 5°, 10°, 20°, 30°, 40°, 50°, and 60°. Emissivity of a serpentinite slab, already used as calibration target for the MARA instrument on Hayabusa 2 MASCOT lander, and for the Thermal Infrared Imager (TIR) spectrometer on Hayabusa 2 orbiter was measured under the same conditions. Additionally a second basalt slab was measured. Both slabs were not measured at 5° inclination. Complementary reflectance measurements of the four samples were taken. For all the samples measured, we found that for calibrated emissivity, significant variations from values obtained at nadir (0° emergence angle) appear only for emergence angles ≥ 40°. Reflectance measurements confirmed this finding, showing the same trend of variations.

ASTER spectral analysis and lithologic mapping of the Khanneshin carbonatite volcano, Afghanistan

USGS Publications Warehouse

Mars, John C.; Rowan, Lawrence C.

2011-01-01

Advanced Spaceborne Thermal and Reflection Radiometer (ASTER) data of the early Quaternary Khanneshin carbonatite volcano located in southern Afghanistan were used to identify carbonate rocks within the volcano and to distinguish them from Neogene ferruginous polymict sandstone and argillite. The carbonatitic rocks are characterized by diagnostic CO3 absorption near 11.2 μm and 2.31–2.33 μm, whereas the sandstone, argillite, and adjacent alluvial deposits exhibit intense Si-O absorption near 8.7 μm caused mainly by quartz and Al-OH absorption near 2.20 μm due to muscovite and illite.Calcitic carbonatite was distinguished from ankeritic carbonatite in the short wave infrared (SWIR) region of the ASTER data due to a slight shift of the CO3 absorption feature toward 2.26 μm (ASTER band 7) in the ankeritic carbonatite spectra. Spectral assessment using ASTER SWIR data suggests that the area is covered by extensive carbonatite flows that contain calcite, ankerite, and muscovite, though some areas mapped as ankeritic carbonatite on a preexisting geologic map were not identified in the ASTER data. A contact aureole shown on the geologic map was defined using an ASTER false color composite image (R = 6, G = 3, B = 1) and a logical operator byte image. The contact aureole rocks exhibit Fe2+, Al-OH, and Fe, Mg-OH spectral absorption features at 1.65, 2.2, and 2.33 μm, respectively, which suggest that the contact aureole rocks contain muscovite, epidote, and chlorite. The contact aureole rocks were mapped using an Interactive Data Language (IDL) logical operator.A visible through short wave infrared (VNIR-SWIR) mineral and rock-type map based on matched filter, band ratio, and logical operator analysis illustrates: (1) laterally extensive calcitic carbonatite that covers most of the crater and areas northeast of the crater; (2) ankeritic carbonatite located southeast and north of the crater and some small deposits located within the crater; (3) agglomerate that primarily covers the inside rim of the crater and a small area west of the crater; (4) a crater rim that consists mostly of epidote-chlorite-muscovite–rich metamorphosed argillite and sandstone; and (5) iron (Fe3+) and muscovite-illite–rich rocks and iron-rich eolian sands surrounding the western part of the volcano. The thermal infrared (TIR) rock-type map illustrates laterally extensive carbonatitic and mafic rocks surrounded by quartz-rich eolian and fluvial reworked sediments. In addition, the combination of VNIR, SWIR, and TIR data complement one another in that the TIR data illustrate more laterally extensive rock types and the VNIR-SWIR data distinguish more specific varieties of rocks and mineral mixtures.

Thermal Imaging of Forest Canopy Temperatures: Relationships with Biological and Biophysical Drivers and Ecosystem Fluxes

NASA Astrophysics Data System (ADS)

Still, C. J.; Kim, Y.; Hanson, C. V.; Law, B. E.; Kwon, H.; Schulze, M.; Pau, S.; Detto, M.

2015-12-01

Temperature is a primary environmental control on plant processes at a range of spatial and temporal scales, affecting enzymatic reactions, ecosystem biogeochemistry, and species distributions. Although most focus is on air temperature, the radiative or skin temperature of plants is more relevant. Canopy skin temperature dynamics reflect biophysical, physiological, and anatomical characteristics and interactions with environmental drivers, and can be used to examine forest responses to stresses like droughts and heat waves. Direct measurements of plant canopy temperatures using thermocouple sensors have been challenging and offer limited information. Such measurements are usually conducted over short periods of time and a limited spatial extent of the canopy. By contrast, thermal infrared (TIR) imaging allows for extensive temporal and spatial measurement of canopy temperature regimes. We present results of TIR imaging of forest canopies at a range of well-studied forest sites in the United States and Panama. These forest types include temperate rainforests, a semi­arid pine forest, and a semi­deciduous tropical forest. Canopy temperature regimes at these sites are highly variable spatially and temporally and display frequent departures from air temperature, particularly during clear sky conditions. Canopy tissue temperatures are often warmer (daytime) and colder (nighttime) than air temperature, and canopy structure seems to have a large influence on the thermal regime. Additionally, comparison of canopy temperatures to eddy covariance fluxes of carbon dioxide, water vapor, and energy reveals relationships not apparent using air temperature. Initial comparisons between our forest canopy temperatures and remotely sensed skin temperature using Landsat and MODIS data show reasonably good agreement. We conclude that temporal and spatial changes in canopy temperature and its relationship to biological and environmental factors can improve our understanding of how climate change is affecting forest function, and argue for wider deployment of thermal cameras in other ecosystems.

Aeolian system dynamics derived from thermal infrared data

NASA Astrophysics Data System (ADS)

Scheidt, Stephen Paul

Thermal infrared (TIR) remote-sensing and field-based observations were used to study aeolian systems, specifically sand transport pathways, dust emission sources and Saharan atmospheric dust. A method was developed for generating seamless and radiometrically accurate mosaics of thermal infrared data from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instrument. Using a combination of high resolution thermal emission spectroscopy results of sand samples and mosaic satellite data, surface emissivity was derived to map surface composition, which led to improvement in the understanding of sand accumulation in the Gran Desierto of northern Sonora, Mexico. These methods were also used to map sand transport pathways in the Sahara Desert, where the interaction between sand saltation and dust emission sources was explored. The characteristics and dynamics of dust sources were studied at White Sands, NM and in the Sahara Desert. At White Sands, an application was developed for studying the response of dust sources to surface soil moisture based on the relationship between soil moisture, apparent thermal inertia and the erosion potential of dust sources. The dynamics of dust sources and the interaction with sand transport pathways were also studied, focusing on the Bodele Depression of Chad and large dust sources in Mali and Mauritania. A dust detection algorithm was developed using ASTER data, and the spectral emissivity of observed atmospheric dust was related to the dust source area in the Sahara. At the Atmospheric Observatory (IZO) in Tenerife, Spain where direct measurement of the Saharan Air Layer could be made, the cycle of dust events occurring in July 2009 were examined. From the observation tower at the IZO, measurements of emitted longwave atmospheric radiance in the TIR wavelength region were made using a Forward Looking Infrared Radiometer (FLIR) handheld camera. The use of the FLIR to study atmospheric dust from the Saharan is a new application. Supporting data from AERONET and other orbital data enabled study of net radiative forcing.

Geologic Mapping and Mineral Resource Assessment of the Healy and Talkeetna Mountains Quadrangles, Alaska Using Minimal Cloud- and Snow-Cover ASTER Data

USGS Publications Warehouse

Hubbard, Bernard E.; Rowan1, Lawrence C.; Dusel-Bacon, Cynthia; Eppinger, Robert G.

2007-01-01

On July 8, 2003, ASTER acquired satellite imagery of a 60 km-wide swath of parts of two 1:250,000 Alaska quadrangles, under favorable conditions of minimal cloud- and snow-cover. Rocks from eight different lithotectonic terranes are exposed within the swath of data, several of which define permissive tracts for various mineral deposit types such as: volcanic-hosted massive sulfides (VMS) and porphyry copper and molybdenum. Representative rock samples collected from 13 different lithologic units from the Bonnifield mining district within the Yukon-Tanana terrane (YTT), plus hydrothermally altered VMS material from the Red Mountain prospect, were analyzed to produce a spectral library spanning the VNIR-SWIR (0.4 - 2.5 ?m) through the TIR (8.1 - 11.7 ?m). Comparison of the five-band ASTER TIR emissivity and decorrelation stretch data to available geologic maps indicates that rocks from the YTT display the greatest range and diversity of silica composition of the mapped terranes, ranging from mafic rocks to silicic quartzites. The nine-band ASTER VNIR-SWIR reflectance data and spectral matched-filter processing were used to map several lithologic sequences characterized by distinct suites of minerals that exhibit diagnostic spectral features (e.g. chlorite, epidote, amphibole and other ferrous-iron bearing minerals); other sequences were distinguished by their weathering characteristics and associated hydroxyl- and ferric-iron minerals, such as illite, smectite, and hematite. Smectite, kaolinite, opaline silica, jarosite and/or other ferric iron minerals defined narrow (< 250 m diameter) zonal patterns around Red Mountain and other potential VMS targets. Using ASTER we identified some of the known mineral deposits in the region, as well as mineralogically similar targets that may represent potential undiscovered deposits. Some known deposits were not identified and may have been obscured by vegetation- or snow-cover, or were too small to be resolved.

The Global ASTER Geoscience and Mineralogical Maps

NASA Astrophysics Data System (ADS)

Abrams, M.

2017-12-01

In 2012, Australia's Commonwealth Scientific and Industrial Research Organization (CSIRO) released 17 Geoscience mineral maps for the continent of Australia We are producing the CSIRO Geoscience data products for the entire land surface of the Earth. These maps are created from Advanced Spacecraft Thermal Emission and Reflection Radiometer (ASTER) data, acquired between 2000 and 2008. ASTER, onboard the United States' Terra satellite, is part of NASA's Earth Observing System. This multispectral satellite system has 14 spectral bands spanning: the visible and near-infrared (VNIR) @ 15 m pixel resolution; shortwave-infrared (SWIR) @ 30 m pixel resolution; and thermal infrared (TIR) @ 90 m pixel resolution. In a polar-orbit, ASTER acquires a 60 km swath of data.The CSIRO maps are the first continental-scale mineral maps generated from an imaging satellite designed to measure clays, quartz and other minerals. Besides their obvious use in resource exploration, the data have applicability to climatological studies. Over Australia, these satellite mineral maps improved our understanding of weathering, erosional and depositional processes in the context of changing weather, climate and tectonics. The clay composition map showed how kaolinite has developed over tectonically stable continental crust in response to deep weathering. The same clay composition map, in combination with one sensitive to water content, enabled the discrimination of illite from montmorillonite clays that typically develop in large depositional environments over thin (sinking) continental crust. This product was also used to measure temporal gains/losses of surface clay caused by periodic wind erosion (dust) and rainfall inundation (flood) events. The two-year project is undertaken by JPL with collaboration from CSIRO. JPL has in-house the entire ASTER global archive of Level 1B image data—more than 1,500,000 scenes. This cloud-screened and vegetation-masked data set will be the basis for creation of the suite of global Geoscience products using all of ASTER's 14 VNIR-SWIR-TIR spectral bands resampled to 100 m pixel resolution. We plan a staged release of the geoscience products through NASA's LPDAAC.

New SHARE 2010 HSI-LiDAR dataset: re-calibration, detection assessment and delivery

NASA Astrophysics Data System (ADS)

Ientilucci, Emmett J.

2016-09-01

This paper revisits hyperspectral data collected from the SpecTIR hyperspectral airborne Rochester Experiment (SHARE) in 2010. It has been determined that there were calibration issues in the SWIR portion of the data. This calibration issue is discussed and has been rectified. Approaches for calibration to radiance and compensation to reflectance are discussed based on in-scene information and radiative transfer codes. In addition to the entire flight line, a much large target detection test and evaluation chip has been created which includes an abundance of potential false alarms. New truth masks are created along with results from target detection algorithms. Co-registered LiDAR data is also presented. Finally, all ground truth information (ground photos, metadata, MODTRAN tape5, ASD ground spectral measurements, target truth masks, etc.), in addition to the HSI flight lines and co-registered LiDAR data, has been organized, packaged and uploaded to the Center for Imaging Science / Digital Imaging and Remote Sensing Lab web server for public use.

Roughness effects on thermal-infrared emissivities estimated from remotely sensed images

NASA Astrophysics Data System (ADS)

Mushkin, Amit; Danilina, Iryna; Gillespie, Alan R.; Balick, Lee K.; McCabe, Matthew F.

2007-10-01

Multispectral thermal-infrared images from the Mauna Loa caldera in Hawaii, USA are examined to study the effects of surface roughness on remotely retrieved emissivities. We find up to a 3% decrease in spectral contrast in ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) 90-m/pixel emissivities due to sub-pixel surface roughness variations on the caldera floor. A similar decrease in spectral contrast of emissivities extracted from MASTER (MODIS/ASTER Airborne Simulator) ~12.5-m/pixel data can be described as a function of increasing surface roughness, which was measured remotely from ASTER 15-m/pixel stereo images. The ratio between ASTER stereo images provides a measure of sub-pixel surface-roughness variations across the scene. These independent roughness estimates complement a radiosity model designed to quantify the unresolved effects of multiple scattering and differential solar heating due to sub-pixel roughness elements and to compensate for both sub-pixel temperature dispersion and cavity radiation on TIR measurements.

Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6.

PubMed

Häcker, Hans; Redecke, Vanessa; Blagoev, Blagoy; Kratchmarova, Irina; Hsu, Li-Chung; Wang, Gang G; Kamps, Mark P; Raz, Eyal; Wagner, Hermann; Häcker, Georg; Mann, Matthias; Karin, Michael

2006-01-12

Toll-like receptors (TLRs) are activated by pathogen-associated molecular patterns to induce innate immune responses and production of pro-inflammatory cytokines, interferons and anti-inflammatory cytokines. TLRs activate downstream effectors through adaptors that contain Toll/interleukin-1 receptor (TIR) domains, but the mechanisms accounting for diversification of TLR effector functions are unclear. To dissect biochemically TLR signalling, we established a system for isolating signalling complexes assembled by dimerized adaptors. Using MyD88 as a prototypical adaptor, we identified TNF receptor-associated factor 3 (TRAF3) as a new component of TIR signalling complexes that is recruited along with TRAF6. Using myeloid cells from TRAF3- and TRAF6-deficient mice, we show that TRAF3 is essential for the induction of type I interferons (IFN) and the anti-inflammatory cytokine interleukin-10 (IL-10), but is dispensable for expression of pro-inflammatory cytokines. In fact, TRAF3-deficient cells overproduce pro-inflammatory cytokines owing to defective IL-10 production. Despite their structural similarity, the functions of TRAF3 and TRAF6 are largely distinct. TRAF3 is also recruited to the adaptor TRIF (Toll/IL-1 receptor domain-containing adaptor-inducing IFN-beta) and is required for marshalling the protein kinase TBK1 (also called NAK) into TIR signalling complexes, thereby explaining its unique role in activation of the IFN response.

Long Term RST Analyses of TIR Satellite Radiances in Different Geotectonic Contexts: Results and Implications for a Time-Dependent Assessment of Seismic Hazard (t-DASH)

NASA Astrophysics Data System (ADS)

Tramutoli, V.; Armandi, B.; Coviello, I.; Eleftheriou, A.; Filizzola, C.; Genzano, N.; Lacava, T.; Lisi, M.; Paciello, R.; Pergola, N.; Satriano, V.; Vallianatos, F.

2014-12-01

A large scientific documentation is to-date available about the appearance of anomalous space-time patterns of geophysical parameters measured from days to week before earthquakes occurrence. Nevertheless up to now no one measurable parameter, no one observational methodology has demonstrated to be sufficiently reliable and effective for the implementation of an operational earthquake prediction system. In this context PRE-EARTHQUAKES EU-FP7 project (www.pre-earthquakes.org), investigated to which extent the combined use of different observations/parameters together with the refinement of data analysis methods, can reduce false alarm rates and improve reliability and precision (in the space-time domain) of predictions. Among the different parameters/methodologies proposed to provide useful information in the earthquake prediction system, since 2001 a statistical approach named RST (Robust Satellite Technique) has been used to identify the space-time fluctuations of Earth's emitted Thermal Infrared (TIR) radiation observed from satellite in seismically active regions. In this paper RST-based long-term analysis of TIR satellite record collected by MSG/SEVIRI over European (Italy and Greece) and by GOES/IMAGER over American (California) regions will be presented. Its enhanced potential, when applied in the framework of time-Dependent Assessment of Seismic Hazard (t-DASH) system continuously integrating independent observations, will be moreover discussed.

Highly selective trapping of enteropathogenic E. coli on Fabry-Pérot sensor mirrors.

PubMed

Ivanova, Elena P; Truong, Vi Khanh; Gervinskas, Gediminas; Mitik-Dineva, Natasa; Day, Daniel; Jones, Robert T; Crawford, Russell J; Juodkazis, Saulius

2012-05-15

Untreated recycled water, such as sewage and graywater, will almost always contain a wide range of agents that are likely to present risks to human health, including chemicals and pathogenic microorganisms. The microbial hazards, such as large numbers of enteric pathogens that can cause gastroenteric illness if ingested, are the main cause of concern for human health. The presence of the enteropathogenic Escherichia coli (EPEC) serotype is of particular concern, as this group of bacteria is responsible for causing severe infant and travelers' diarrhea, gastroenteritis and hemolytic uremic syndrome. A biosensing system based on an optical Fabry-Pérot (FP) cavity, capable of directly detecting the presence of EPEC within 5 min, has been developed using a simple micro-thin double-sided adhesive tape and two semi-transparent FP mirror plates. The system utilizes a poly(methyl methacrylate) (PMMA) or glass substrates sputtered by 40-nm-thick gold thin films serving as FP mirrors. Mirrors have been activated using 0.1M mercaptopropionic acid, influencing an immobilization density of the translocated intimin receptor (TIR) of 100 ng/cm(2). The specificity of recognition was confirmed by exposing TIR functionalized surfaces to four taxonomically related and/or distantly related bacterial strains. It was found that the TIR-functionalized surfaces did not show any bacterial capture for these other bacterial strains within a 15 min incubation period. Copyright © 2012 Elsevier B.V. All rights reserved.

Integrated thermal infrared imaging and Structure-from-Motion photogrametry to map apparent temperature and radiant hydrothermal heat flux at Mammoth Mountain, CA USA

USGS Publications Warehouse

Lewis, Aaron; George Hilley,; Lewicki, Jennifer L.

2015-01-01

This work presents a method to create high-resolution (cm-scale) orthorectified and georeferenced maps of apparent surface temperature and radiant hydrothermal heat flux and estimate the radiant hydrothermal heat emission rate from a study area. A ground-based thermal infrared (TIR) camera was used to collect (1) a set of overlapping and offset visible imagery around the study area during the daytime and (2) time series of co-located visible and TIR imagery at one or more sites within the study area from pre-dawn to daytime. Daytime visible imagery was processed using the Structure-from-Motion photogrammetric method to create a digital elevation model onto which pre-dawn TIR imagery was orthorectified and georeferenced. Three-dimensional maps of apparent surface temperature and radiant hydrothermal heat flux were then visualized and analyzed from various computer platforms (e.g., Google Earth, ArcGIS). We demonstrate this method at the Mammoth Mountain fumarole area on Mammoth Mountain, CA. Time-averaged apparent surface temperatures and radiant hydrothermal heat fluxes were observed up to 73.7 oC and 450 W m-2, respectively, while the estimated radiant hydrothermal heat emission rate from the area was 1.54 kW. Results should provide a basis for monitoring potential volcanic unrest and mitigating hydrothermal heat-related hazards on the volcano.

Effects of a telescopic intramedullary rod for treating patients with osteogenesis imperfecta of the femur

PubMed Central

Rosemberg, D. L.; Goiano, E. O.; Akkari, M.; Santili, C.

2018-01-01

Abstract Purpose To introduce a new model of telescopic intramedullary rod (TIR), evaluate its effects on treating patients presenting with moderate and severe osteogenesis imperfecta (OI) and to compare the findings with those of other telescopic rods. Methods A total of 21 patients (nine girls and 12 boys; mean age at first operation, 6.6 years, 1.52 to 13.18) who underwent 52 femoral operations were monitored during a mean of 9.96 years (3.39 to 14.54). Patient characteristics, telescoping rod capability and its complications were examined. Results According to the Sillence classification, we investigated one patient with type I, nine with type III and 11 with type IV OI. Revision rates at up to five years (36%) were inferior to those found for the Fassier-Duval rod (46%). The main cause of revision was fracture (15 patients), followed by rod migration (nine), and infection (two). The rod exhibited higher telescopic capacity in boys than girls. Type III most commonly required an operation; the age group with the highest number of procedures was five to ten years. Male migration was the main cause of rod migration. Conclusion The TIR has a satisfactory cost-benefit ratio with less complication rates and low production costs. The TIR is a feasible alternative to the commonly used Fassier-Duval rod. Level of Evidence IV PMID:29456761

Discriminating satellite IR anomalies associated with the MS 7.1 Yushu earthquake in China

NASA Astrophysics Data System (ADS)

Qin, Kai; Wu, Lixin; Zheng, Shuo; Ma, Weiyu

2018-03-01

In the process of exploring pre-earthquake thermal anomalies using satellite infrared data, Blackett et al. (2011) found that the previously reported anomalies before the 2001 Mw 7.7 Gujarat earthquake, in India, were related to positive biases caused by data gaps due to cloud cover and mosaicing of neighboring orbits of MODIS satellite data. They supposed that such effects could also be responsible for other cases. We noted a strip-shaped TIR anomaly on March 17th, 2010, 28 days before the Ms. 7.1 Yushu earthquake (Qin et al., 2011). Here we again investigate multi-year infrared satellite data in different bands to discriminate whether the anomaly is associated with the earthquake, or is only bias caused by the data gaps. From the water vapor images, we find lots of clouds that have TIR anomalies. However, on the cloudiness background, there is an obvious strip-shaped gap matching the tectonic faults almost perfectly. In particular, the animation loops of hourly water vapor images show that the cloud kept moving from west to east, while they never covered the strip-shaped gap. We consider that the cloud with this special spatial pattern should have implied the abnormal signals associated with the seismogenic process. Based on current physical models, the satellite IR anomalies both on TIR and water vapor bands can qualitatively be explained using synthetic mechanisms.

Two new miniature inverted-repeat transposable elements in the genome of the clam Donax trunculus.

PubMed

Šatović, Eva; Plohl, Miroslav

2017-10-01

Repetitive sequences are important components of eukaryotic genomes that drive their evolution. Among them are different types of mobile elements that share the ability to spread throughout the genome and form interspersed repeats. To broaden the generally scarce knowledge on bivalves at the genome level, in the clam Donax trunculus we described two new non-autonomous DNA transposons, miniature inverted-repeat transposable elements (MITEs), named DTC M1 and DTC M2. Like other MITEs, they are characterized by their small size, their A + T richness, and the presence of terminal inverted repeats (TIRs). DTC M1 and DTC M2 are 261 and 286 bp long, respectively, and in addition to TIRs, both of them contain a long imperfect palindrome sequence in their central parts. These elements are present in complete and truncated versions within the genome of the clam D. trunculus. The two new MITEs share only structural similarity, but lack any nucleotide sequence similarity to each other. In a search for related elements in databases, blast search revealed within the Crassostrea gigas genome a larger element sharing sequence similarity only to DTC M1 in its TIR sequences. The lack of sequence similarity with any previously published mobile elements indicates that DTC M1 and DTC M2 elements may be unique to D. trunculus.

NASA 2014 The Hyperspectral Infrared Imager (HyspIRI) - Science Impact of Deploying Instruments on Separate Platforms

NASA Technical Reports Server (NTRS)

Turpie, Kevin; Veraverbeke, Sander; Wright, Robert; Anderson, Martha; Prakash, Anupma; Quattrochi, Dale

2014-01-01

The Hyperspectral Infrared Imager (HyspIRI) mission was recommended for implementation by the 2007 report from the U.S. National Research Council Earth Science and Applications from Space: National Imperatives for the Next Decade and Beyond, also known as the Earth Science Decadal Survey. The HyspIRI mission is science driven and will address a set of science questions identified by the Decadal Survey and broader science community. The mission includes a visible shortwave infrared (VSWIR) imaging spectrometer, a multispectral thermal infrared (TIR) imager and an intelligent payload module (IPM). The IPM enables on-board processing and direct broadcast for those applications with short latency requirements. The science questions are organized as VSWIR-only, TIR-only and Combined science questions, the latter requiring data from both instruments. In order to prepare for the mission NASA is undertaking pre-phase A studies to determine the optimum mission implementation, in particular, cost and risk reduction activities. Each year the HyspIRI project is provided with feedback from NASA Headquarters on the pre-phase A activities in the form of a guidance letter which outlines the work that should be undertaken the subsequent year. The 2013 guidance letter included a recommendation to undertake a study to determine the science impact of deploying the instruments from separate spacecraft in sun synchronous orbits with various time separations and deploying both instruments on the International Space Station (ISS). This report summarizes the results from that study. The approach taken was to evaluate the impact on the combined science questions of time separations between the VSWIR and TIR data of <3 minutes, <1 week and a few months as well as deploying both instruments on the ISS. Note the impact was only evaluated for the combined science questions which require data from both instruments (VSWIR and TIR). The study concluded the impact of a separation of <3 minutes was minimal, e.g. if the instruments were on separate platforms that followed each other in a train. The impact of a separation of <1 week was strongly dependent on the question that was being addressed with no impact for some questions and a severe impact for others. The impact of a time separation of several months was severe and in many cases it was no longer possible to answer the sub-question. The impact of deploying the instruments on the ISS which is in a precessive (non-sun synchronous) orbit was also very question dependent, in some cases it was possible to go beyond the original question, e.g. to examine the impact of the diurnal cycle, whereas in other cases the question could not be addressed for example if the question required observations from the polar regions. As part of the study, the participants were asked to estimate, as a percentage, how completely a given sub-question could be answered with 100% indicating the question could be completely answered. These estimations should be treated with caution but nonetheless can be useful in assessing the impact. Averaging the estimates for each of the combined questions the results indicate that 97% of the questions could be answered with a separation of < 3 minutes. With a separation of < 1 week, 67% of the questions could be answered and with a separation of several months only 21% of the questions could be answered.

Land surface temperature measurements from EOS MODIS data

NASA Technical Reports Server (NTRS)

Wan, Zhengming

1993-01-01

The task objectives of this reporting phase included: (1) completing the draft of the LST Algorithms Theoretical Basic Document by July 30, 1993; (2) making a detailed characterization of the thermal infrared measurement system including spectrometer, blackbody, and radiation sources; (3) making TIR spectral measurements of water and snow-cover surfaces with the MIDAC M2401 spectrometer; and (4) making conceptual and engineering design of an accessory system for spectrometric measurements at variable angles. These objectives are based on the requirements by the MODIS Science Team and the unique challenge in the development of MODIS LST algorithms: to acquire accurate spectral emissivity data of land covers in the near-term and to make ground validations of the LST product in the long-term with a TIR measurement system.

Circularized Chromosome with a Large Palindromic Structure in Streptomyces griseus Mutants

PubMed Central

Uchida, Tetsuya; Ishihara, Naoto; Zenitani, Hiroyuki; Hiratsu, Keiichiro; Kinashi, Haruyasu

2004-01-01

Streptomyces linear chromosomes display various types of rearrangements after telomere deletion, including circularization, arm replacement, and amplification. We analyzed the new chromosomal deletion mutants Streptomyces griseus 301-22-L and 301-22-M. In these mutants, chromosomal arm replacement resulted in long terminal inverted repeats (TIRs) at both ends; different sizes were deleted again and recombined inside the TIRs, resulting in a circular chromosome with an extremely large palindrome. Short palindromic sequences were found in parent strain 2247, and these sequences might have played a role in the formation of this unique structure. Dynamic structural changes of Streptomyces linear chromosomes shown by this and previous studies revealed extraordinary strategies of members of this genus to keep a functional chromosome, even if it is linear or circular. PMID:15150216

A Roundtable Discussion: Combination Products: Twice the Challenge?

PubMed

Baird, Nolan; Binion, Steven B; Cammack, Jon; Paine, Stephanie Del; Gonzales, Rosemary; Passut, Jena; Weiner, John Barlow Barr

2015-01-01

Combination products are therapeutic or diagnostic medical products that combine drugs, devices, and/or biological products with one another. FDA developed a regulation (final rule) on Current Good Manufacturing Practices (CGMP) for combination products that became effective July 22, 2013 (21 CFR Part 4). AAMI recently developed a technical information report (TIR) that provides information on how to effectively implement FDA's regulation. The overall goal of the TIR is to aid informed, risk-based decisions in establishing CGMP operating systems that support development, manufacture, premarket regulatory evaluation, and ultimately commercialization of combination products. This article, a result of an discussion with industry and FDA representatives, explores the landscape of combination products, highlights important considerations in developing and seeking marketing clearance for these innovative products, and provides insight on trends in the area.

Calibration of the Thermal Infrared Sensor on the Landsat Data Continuity Mission

NASA Technical Reports Server (NTRS)

Thome, K; Reuter, D.; Lunsford, D.; Montanaro, M.; Smith, J.; Tesfaye, Z.; Wenny, B.

2011-01-01

The Landsat series of satellites provides the longest running continuous data set of moderate-spatial-resolution imagery beginning with the launch of Landsat 1 in 1972 and continuing with the 1999 launch of Landsat 7 and current operation of Landsats 5 and 7. The Landsat Data Continuity Mission (LDCM) will continue this program into a fourth decade providing data that are keys to understanding changes in land-use changes and resource management. LDCM consists of a two-sensor platform comprised of the Operational Land Imager (OLI) and Thermal Infrared Sensors (TIRS). A description of the applications and design of the TIRS instrument is given as well as the plans for calibration and characterization. Included are early results from preflight calibration and a description of the inflight validation.

High-resolution satellite and airborne thermal infrared imaging of precursory unrest and 2009 eruption of Redoubt Volcano, Alaska

USGS Publications Warehouse

Wessels, Rick L.; Vaughan, R. Greg; Patrick, Matthew R.; Coombs, Michelle L.

2013-01-01

A combination of satellite and airborne high-resolution visible and thermal infrared (TIR) image data detected and measured changes at Redoubt Volcano during the 2008–2009 unrest and eruption. The TIR sensors detected persistent elevated temperatures at summit ice-melt holes as seismicity and gas emissions increased in late 2008 to March 2009. A phreatic explosion on 15 March was followed by more than 19 magmatic explosive events from 23 March to 4 April that produced high-altitude ash clouds and large lahars. Two (or three) lava domes extruded and were destroyed between 23 March and 4 April. After 4 April, the eruption extruded a large lava dome that continued to grow until at least early July 2009.

Volcanic Cloud and Aerosol Monitor (VOLCAM) for Deep Space Gateway

NASA Astrophysics Data System (ADS)

Krotkov, N.; Bhartia, P. K.; Torres, O.; Li, C.; Sander, S.; Realmuto, V.; Carn, S.; Herman, J.

2018-02-01

We propose complementary ultraviolet (UV) and thermal Infrared (TIR) filter cameras for a dual-purpose whole Earth imaging with complementary natural hazards applications and Earth system science goals.

Constitutive heterologous overexpression of a TIR-NB-ARC-LRR gene encoding a putative disease resistance protein from wild Chinese Vitis pseudoreticulata in Arabidopsis and tobacco enhances resistance to phytopathogenic fungi and bacteria.

PubMed

Wen, Zhifeng; Yao, Liping; Singer, Stacy D; Muhammad, Hanif; Li, Zhi; Wang, Xiping

2017-03-01

Plants use resistance (R) proteins to detect pathogen effector proteins and activate their innate immune response against the pathogen. The majority of these proteins contain an NB-ARC (nucleotide-binding adaptor shared by APAF-1, R proteins, and CED-4) domain along with a leucine-rich repeat (LRR), and some also bear a toll interleukin 1 receptor (TIR) domain. In this study, we characterized a gene encoding a TIR-NB-ARC-LRR R protein (VpTNL1) (GenBank accession number KX649890) from wild Chinese grapevine Vitis pseudoreticulata accession "Baihe-35-1", which was identified previously from a transcriptomic analysis of leaves inoculated with powdery mildew (PM; Erysiphe necator (Schw.)). The VpTNL1 transcript was found to be highly induced in V. pseudoreticulata following inoculation with E. necator, as well as treatment with salicylic acid (SA). Sequence analysis demonstrated that the deduced amino acid sequence contained a TIR domain at the N-terminus, along with an NB-ARC and four LRRs domains within the C-terminus. Constitutive expression of VpTNL1 in Arabidopsis thaliana resulted in either a wild-type or dwarf phenotype. Intriguingly, the phenotypically normal transgenic lines displayed enhanced resistance to Arabidopsis PM, Golovinomyces cichoracearum, as well as to the virulent bacterial pathogen Pseudomonas syringae pv. tomato DC3000. Similarly, constitutive expression of VpTNL1 in Nicotiana tabacum was found to confer enhanced resistance to tobacco PM, Erysiphe cichoacearum DC. Subsequent isolation of the VpTNL1 promoter and deletion analysis indicated that TC-rich repeats and TCA elements likely play an important role in its response to E. necator and SA treatment, respectively. Taken together, these results indicate that VpTNL1 contributes to PM resistance in grapevine and provide an interesting gene target for the future amelioration of grape via breeding and/or biotechnology. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

A comparison of thermal infrared to fiber-optic distributed temperature sensing for evaluation of groundwater discharge to surface water

NASA Astrophysics Data System (ADS)

Hare, Danielle K.; Briggs, Martin A.; Rosenberry, Donald O.; Boutt, David F.; Lane, John W.

2015-11-01

Groundwater has a predictable thermal signature that can be used to locate discrete zones of discharge to surface water. As climate warms, surface water with strong groundwater influence will provide habitat stability and refuge for thermally stressed aquatic species, and is therefore critical to locate and protect. Alternatively, these discrete seepage locations may serve as potential point sources of contaminants from polluted aquifers. This study compares two increasingly common heat tracing methods to locate discrete groundwater discharge: direct-contact measurements made with fiber-optic distributed temperature sensing (FO-DTS) and remote sensing measurements collected with thermal infrared (TIR) cameras. FO-DTS is used to make high spatial resolution (typically m) thermal measurements through time within the water column using temperature-sensitive cables. The spatial-temporal data can be analyzed with statistical measures to reveal zones of groundwater influence, however, the personnel requirements, time to install, and time to georeference the cables can be burdensome, and the control units need constant calibration. In contrast, TIR data collection, either from handheld, airborne, or satellite platforms, can quickly capture point-in-time evaluations of groundwater seepage zones across large scales. However the remote nature of TIR measurements means they can be adversely influenced by a number of environmental and physical factors, and the measurements are limited to the surface ;skin; temperature of water features. We present case studies from a range of lentic to lotic aquatic systems to identify capabilities and limitations of both technologies and highlight situations in which one or the other might be a better instrument choice for locating groundwater discharge. FO-DTS performs well in all systems across seasons, but data collection was limited spatially by practical considerations of cable installation. TIR is found to consistently locate groundwater seepage zones above and along the streambank, but submerged seepage zones are only well identified in shallow systems (e.g. <0.5 m depth) with moderate flow. Winter data collection, when groundwater is relatively warm and buoyant, increases the water surface expression of discharge zones in shallow systems.

Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha

PubMed Central

Kato, Hirotaka; Ishizaki, Kimitsune; Kouno, Masaru; Shirakawa, Makoto; Bowman, John L.; Nishihama, Ryuichi; Kohchi, Takayuki

2015-01-01

The plant hormone auxin regulates many aspects of plant growth and development. Recent progress in Arabidopsis provided a scheme that auxin receptors, TIR1/AFBs, target transcriptional co-repressors, AUX/IAAs, for degradation, allowing ARFs to regulate transcription of auxin responsive genes. The mechanism of auxin-mediated transcriptional regulation is considered to have evolved around the time plants adapted to land. However, little is known about the role of auxin-mediated transcription in basal land plant lineages. We focused on the liverwort Marchantia polymorpha, which belongs to the earliest diverging lineage of land plants. M. polymorpha has only a single TIR1/AFB (MpTIR1), a single AUX/IAA (MpIAA), and three ARFs (MpARF1, MpARF2, and MpARF3) in the genome. Expression of a dominant allele of MpIAA with mutations in its putative degron sequence conferred an auxin resistant phenotype and repressed auxin-dependent expression of the auxin response reporter proGH3:GUS. We next established a system for DEX-inducible auxin-response repression by expressing the putatively stabilized MpIAA protein fused with the glucocorticoid receptor domain (MpIAAmDII-GR). Repression of auxin responses in proMpIAA:MpIAAmDII-GR plants caused severe defects in various developmental processes, including gemmaling development, dorsiventrality, organogenesis, and tropic responses. Transient transactivation assays showed that the three MpARFs had different transcriptional activities, each corresponding to their phylogenetic classifications. Moreover, MpIAA and MpARF proteins interacted with each other with different affinities. This study provides evidence that pleiotropic auxin responses can be achieved by a minimal set of auxin signaling factors and suggests that the transcriptional regulation mediated by TIR1/AFB, AUX/IAA, and three types of ARFs might have been a key invention to establish body plans of land plants. We propose that M. polymorpha is a good model to investigate the principles and the evolution of auxin-mediated transcriptional regulation and its roles in land plant morphogenesis. PMID:26020919

Diversity of Survival Patterns among Escherichia coli O157:H7 Genotypes Subjected to Food-Related Stress Conditions.

PubMed

Elhadidy, Mohamed; Álvarez-Ordóñez, Avelino

2016-01-01

The purpose of this study was to evaluate the resistance patterns to food-related stresses of Shiga toxin producing Escherichia coli O157:H7 strains belonging to specific genotypes. A total of 33 E. coli O157:H7 strains were exposed to seven different stress conditions acting as potential selective pressures affecting the transmission of E. coli O157:H7 to humans through the food chain. These stress conditions included cold, oxidative, osmotic, acid, heat, freeze-thaw, and starvation stresses. The genotypes used for comparison included lineage-specific polymorphism, Shiga-toxin-encoding bacteriophage insertion sites, clade type, tir (A255T) polymorphism, Shiga toxin 2 subtype, and antiterminator Q gene allele. Bacterial resistance to different stressors was calculated by determining D-values (times required for inactivation of 90% of the bacterial population), which were then subjected to univariate and multivariate analyses. In addition, a relative stress resistance value, integrating resistance values to all tested stressors, was calculated for each bacterial strain and allowed for a ranking-type classification of E. coli O157:H7 strains according to their environmental robustness. Lineage I/II strains were found to be significantly more resistant to acid, cold, and starvation stress than lineage II strains. Similarly, tir (255T) and clade 8 encoding strains were significantly more resistant to acid, heat, cold, and starvation stress than tir (255A) and non-clade 8 strains. Principal component analysis, which allows grouping of strains with similar stress survival characteristics, separated strains of lineage I and I/II from strains of lineage II, which in general showed reduced survival abilities. Results obtained suggest that lineage I/II, tir (255T), and clade 8 strains, which have been previously reported to be more frequently associated with human disease cases, have greater multiple stress resistance than strains of other genotypes. The results from this study provide a better insight into how selective pressures encountered through the food chain may play a role in the epidemiology of STEC O157:H7 through controlling the transmission of highly adapted strains to humans.

Diversity of Survival Patterns among Escherichia coli O157:H7 Genotypes Subjected to Food-Related Stress Conditions

PubMed Central

Elhadidy, Mohamed; Álvarez-Ordóñez, Avelino

2016-01-01

The purpose of this study was to evaluate the resistance patterns to food-related stresses of Shiga toxin producing Escherichia coli O157:H7 strains belonging to specific genotypes. A total of 33 E. coli O157:H7 strains were exposed to seven different stress conditions acting as potential selective pressures affecting the transmission of E. coli O157:H7 to humans through the food chain. These stress conditions included cold, oxidative, osmotic, acid, heat, freeze-thaw, and starvation stresses. The genotypes used for comparison included lineage-specific polymorphism, Shiga-toxin-encoding bacteriophage insertion sites, clade type, tir (A255T) polymorphism, Shiga toxin 2 subtype, and antiterminator Q gene allele. Bacterial resistance to different stressors was calculated by determining D-values (times required for inactivation of 90% of the bacterial population), which were then subjected to univariate and multivariate analyses. In addition, a relative stress resistance value, integrating resistance values to all tested stressors, was calculated for each bacterial strain and allowed for a ranking-type classification of E. coli O157:H7 strains according to their environmental robustness. Lineage I/II strains were found to be significantly more resistant to acid, cold, and starvation stress than lineage II strains. Similarly, tir (255T) and clade 8 encoding strains were significantly more resistant to acid, heat, cold, and starvation stress than tir (255A) and non-clade 8 strains. Principal component analysis, which allows grouping of strains with similar stress survival characteristics, separated strains of lineage I and I/II from strains of lineage II, which in general showed reduced survival abilities. Results obtained suggest that lineage I/II, tir (255T), and clade 8 strains, which have been previously reported to be more frequently associated with human disease cases, have greater multiple stress resistance than strains of other genotypes. The results from this study provide a better insight into how selective pressures encountered through the food chain may play a role in the epidemiology of STEC O157:H7 through controlling the transmission of highly adapted strains to humans. PMID:27014242

Auxin-Mediated Transcriptional System with a Minimal Set of Components Is Critical for Morphogenesis through the Life Cycle in Marchantia polymorpha.

PubMed

Kato, Hirotaka; Ishizaki, Kimitsune; Kouno, Masaru; Shirakawa, Makoto; Bowman, John L; Nishihama, Ryuichi; Kohchi, Takayuki

2015-05-01

The plant hormone auxin regulates many aspects of plant growth and development. Recent progress in Arabidopsis provided a scheme that auxin receptors, TIR1/AFBs, target transcriptional co-repressors, AUX/IAAs, for degradation, allowing ARFs to regulate transcription of auxin responsive genes. The mechanism of auxin-mediated transcriptional regulation is considered to have evolved around the time plants adapted to land. However, little is known about the role of auxin-mediated transcription in basal land plant lineages. We focused on the liverwort Marchantia polymorpha, which belongs to the earliest diverging lineage of land plants. M. polymorpha has only a single TIR1/AFB (MpTIR1), a single AUX/IAA (MpIAA), and three ARFs (MpARF1, MpARF2, and MpARF3) in the genome. Expression of a dominant allele of MpIAA with mutations in its putative degron sequence conferred an auxin resistant phenotype and repressed auxin-dependent expression of the auxin response reporter proGH3:GUS. We next established a system for DEX-inducible auxin-response repression by expressing the putatively stabilized MpIAA protein fused with the glucocorticoid receptor domain (MpIAA(mDII)-GR). Repression of auxin responses in (pro)MpIAA:MpIAA(mDII)-GR plants caused severe defects in various developmental processes, including gemmaling development, dorsiventrality, organogenesis, and tropic responses. Transient transactivation assays showed that the three MpARFs had different transcriptional activities, each corresponding to their phylogenetic classifications. Moreover, MpIAA and MpARF proteins interacted with each other with different affinities. This study provides evidence that pleiotropic auxin responses can be achieved by a minimal set of auxin signaling factors and suggests that the transcriptional regulation mediated by TIR1/AFB, AUX/IAA, and three types of ARFs might have been a key invention to establish body plans of land plants. We propose that M. polymorpha is a good model to investigate the principles and the evolution of auxin-mediated transcriptional regulation and its roles in land plant morphogenesis.

Using SSTAs (Significant Sequences of TIR Anomalies) to trigger Natural Time Analysis: a Long Term Study on Earthquakes (M>4) occurred over Greece in 2004-2013

NASA Astrophysics Data System (ADS)

Tramutoli, V.; Eleftheriou, A.; Filizzola, C.; Genzano, N.; Lacava, T.; Lisi, M.; Paciello, R.; Pergola, N.; Vallianatos, F.

2016-12-01

From an appropriate identification and real-time integration of independent observations we expect to significantly improve our present capability of dynamically assess Seismic Hazard. Sometime one specific observation (e.g. anomaly in one parameter) can be used as a trigger or as a reference point (in the space and/or time domain) for activating/improving analysis on other independent parameters (e.g. b-value computation and/or Natural Time Analysis on seismic data) whose systematic computation could result otherwise very computationally expensive or impossible. In this paper one of these parameter (the Earth's emitted radiation in the Thermal Infra-Red spectral region) will be used to drive the application of Natural Time Analysis of seismic data in order to verify possible improvements in the forecast of earthquakes (with M≥4) occurred in Greece in the 10 years period 2004-2013. The RST (Robust Satellite Technique) data analysis approach and RETIRA (Robust Estimator of TIR Anomalies) index were used to preliminarily define, and then to identify, Significant Sequences of TIR Anomalies (SSTAs) in 10 years (2004-2013) of daily TIR images acquired by the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on board the Meteosat Second Generation (MSG) satellite. A previous paper already demonstrated that more than 93% of all identified SSTAs occurred in a pre-fixed space-time window around earthquakes time (30 days before up to 15 after) and location (within 150 km or Dorbrovolsky distance) with a false positive rate smaller than 7%. In this paper just the barycenter of (and not all the alerted area) SSTAs is used to define the center of the circular area from which collect seismic data required for NTA analysis. Changes in the quality of earthquake forecast achieved by using each individual parameter in different configurations as well as the improvement rising by their joint use will be presented with reference to the 10 years considered period and to several recent events occurred in Greece.

Impact of line parameter database and continuum absorption on GOSAT TIR methane retrieval

NASA Astrophysics Data System (ADS)

Yamada, A.; Saitoh, N.; Nonogaki, R.; Imasu, R.; Shiomi, K.; Kuze, A.

2017-12-01

The current methane retrieval algorithm (V1) at wavenumber range from 1210 cm-1 to 1360 cm-1 including CH4 ν 4 band from the thermal infrared (TIR) band of Thermal and Near-infrared Sensor for Carbon Observation Fourier Transform Spectrometer (TANSO-FTS) onboard Greenhouse Gases Observing Satellite (GOSAT) uses LBLRTM V12.1 with AER V3.1 line database and MT CKD 2.5.2 continuum absorption model to calculate optical depth. Since line parameter databases have been updated and the continuum absorption may have large uncertainty, the purpose of this study is to assess the impact on {CH}4 retrieval from the choice of line parameter databases and the uncertainty of continuum absorption. We retrieved {CH}4 profiles with replacement of line parameter database from AER V3.1 to AER v1.0, HITRAN 2004, HITRAN 2008, AER V3.2, or HITRAN 2012 (Rothman et al. 2005, 2009, and 2013. Clough et al., 2005), we assumed 10% larger continuum absorption coefficients and 50% larger temperature dependent coefficient of continuum absorption based on the report by Paynter and Ramaswamy (2014). We compared the retrieved CH4 with the HIPPO CH4 observation (Wofsy et al., 2012). The difference from HIPPO observation of AER V3.2 was the smallest and 24.1 ± 45.9 ppbv. The differences of AER V1.0, HITRAN 2004, HITRAN 2008, and HITRAN 2012 were 35.6 ± 46.5 ppbv, 37.6 ± 46.3 ppbv, 32.1 ± 46.1 ppbv, and 35.2 ± 46.0 ppbv, respectively. Maximum {CH}4 retrieval differences were -0.4 ppbv at the layer of 314 hPa when we used 10% larger absorption coefficients of {H}2O foreign continuum. Comparing AER V3.2 case to HITRAN 2008 case, the line coupling effect reduced difference by 8.0 ppbv. Line coupling effects were important for GOSAT TIR {CH}4 retrieval. Effects from the uncertainty of continuum absorption were negligible small for GOSAT TIR CH4 retrieval.

Constraints on methane emissions in North America from future geostationary remote-sensing measurements

DOE PAGES

Bousserez, Nicolas; Henze, Daven K.; Rooney, Brigitte; ...

2016-05-20

The success of future geostationary (GEO) satellite observation missions depends on our ability to design instruments that address their key scientific objectives. Here, an Observation System Simulation Experiment (OSSE) is performed to quantify the constraints on methane (CH 4) emissions in North America obtained from shortwave infrared (SWIR), thermal infrared (TIR), and multi-spectral (SWIR+TIR) measurements in geostationary orbit and from future SWIR low-Earth orbit (LEO) measurements. Furthermore, we used an efficient stochastic algorithm to compute the information content of the inverted emissions at high spatial resolution (0.5° × 0.7°) in a variational framework using the GEOS-Chem chemistry-transport model and itsmore » adjoint. Our results show that at sub-weekly timescales, SWIR measurements in GEO orbit can constrain about twice as many independent flux patterns than in LEO orbit, with a degree of freedom for signal (DOF) for the inversion of 266 and 115, respectively. Comparisons between TIR GEO and SWIR LEO configurations reveal that poor boundary layer sensitivities for the TIR measurements cannot be compensated for by the high spatiotemporal sampling of a GEO orbit. The benefit of a multi-spectral instrument compared to current SWIR products in a GEO context is shown for sub-weekly timescale constraints, with an increase in the DOF of about 50 % for a 3-day inversion. Our results further suggest that both the SWIR and multi-spectral measurements on GEO orbits could almost fully resolve CH 4 fluxes at a spatial resolution of at least 100 km × 100 km over source hotspots (emissions > 4 × 10 5 kg day -1). The sensitivity of the optimized emission scaling factors to typical errors in boundary and initial conditions can reach 30 and 50 % for the SWIR GEO or SWIR LEO configurations, respectively, while it is smaller than 5 % in the case of a multi-spectral GEO system. Our results demonstrate that multi-spectral measurements from a geostationary satellite platform would address the need for higher spatiotemporal constraints on CH 4 emissions while greatly mitigating the impact of inherent uncertainties in source inversion methods on the inferred fluxes.« less

Constraints on methane emissions in North America from future geostationary remote-sensing measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bousserez, Nicolas; Henze, Daven K.; Rooney, Brigitte

The success of future geostationary (GEO) satellite observation missions depends on our ability to design instruments that address their key scientific objectives. Here, an Observation System Simulation Experiment (OSSE) is performed to quantify the constraints on methane (CH 4) emissions in North America obtained from shortwave infrared (SWIR), thermal infrared (TIR), and multi-spectral (SWIR+TIR) measurements in geostationary orbit and from future SWIR low-Earth orbit (LEO) measurements. Furthermore, we used an efficient stochastic algorithm to compute the information content of the inverted emissions at high spatial resolution (0.5° × 0.7°) in a variational framework using the GEOS-Chem chemistry-transport model and itsmore » adjoint. Our results show that at sub-weekly timescales, SWIR measurements in GEO orbit can constrain about twice as many independent flux patterns than in LEO orbit, with a degree of freedom for signal (DOF) for the inversion of 266 and 115, respectively. Comparisons between TIR GEO and SWIR LEO configurations reveal that poor boundary layer sensitivities for the TIR measurements cannot be compensated for by the high spatiotemporal sampling of a GEO orbit. The benefit of a multi-spectral instrument compared to current SWIR products in a GEO context is shown for sub-weekly timescale constraints, with an increase in the DOF of about 50 % for a 3-day inversion. Our results further suggest that both the SWIR and multi-spectral measurements on GEO orbits could almost fully resolve CH 4 fluxes at a spatial resolution of at least 100 km × 100 km over source hotspots (emissions > 4 × 10 5 kg day -1). The sensitivity of the optimized emission scaling factors to typical errors in boundary and initial conditions can reach 30 and 50 % for the SWIR GEO or SWIR LEO configurations, respectively, while it is smaller than 5 % in the case of a multi-spectral GEO system. Our results demonstrate that multi-spectral measurements from a geostationary satellite platform would address the need for higher spatiotemporal constraints on CH 4 emissions while greatly mitigating the impact of inherent uncertainties in source inversion methods on the inferred fluxes.« less

Innovative approach to retrieve land surface emissivity and land surface temperature in areas of highly dynamic emissivity changes by using thermal infrared data

NASA Astrophysics Data System (ADS)

Heinemann, S.

2015-12-01

The land surface temperature (LST) is an extremely significant parameter in order to understand the processes of energetic interactions between Earth's surface and atmosphere. This knowledge is significant for various environmental research questions, particularly with regard to the recent climate change. This study shows an innovative approach to retrieve land surface emissivity (LSE) and LST by using thermal infrared (TIR) data from satellite sensors, such as SEVIRI and AATSR. So far there are no methods to derive LSE/LST particularly in areas of highly dynamic emissivity changes. Therefore especially for regions with large surface temperature amplitude in the diurnal cycle such as bare and uneven soil surfaces but also for regions with seasonal changes in vegetation cover including various surface areas such as grassland, mixed forests or agricultural land different methods were investigated to identify the most appropriate one. The LSE is retrieved by using the day/night Temperature-Independent Spectral Indices (TISI) method, and the Generalised Split-Window (GSW) method is used to retrieve the LST. Nevertheless different GSW algorithms show that equal LSEs lead to large LST differences. Additionally LSE is also measured using a NDVI-based threshold method (NDVITHM) to distinguish between soil, dense vegetation cover and pixel composed of soil and vegetation. The data used for this analysis were derived from MODIS TIR. The analysis is implemented with IDL and an intercomparison is performed to determine the most effective methods. To compensate temperature differences between derived and ground truth data appropriate correction terms by comparing derived LSE/LST data with ground-based measurements are developed. One way to calibrate LST retrievals is by comparing the canopy leaf temperature of conifers derived from TIR data with the surrounding air temperature (e.g. from synoptic stations). Prospectively, the derived LSE/LST data become validated with near infrared data obtained from an UVA with a TIR camera (TIRC) onboard, and also compared with ground-based measurements. This study aims to generate an appropriate method by integrating developed correction terms to eventually obtain a high correlation between all, LSE/LST, TIRC and ground truth data.

High Spatial Resolution Airborne Multispectral Thermal Infrared Remote Sensing Data for Analysis of Urban Landscape Characteristics

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.; Luvall, Jeffrey C.; Estes, Maurice G., Jr.; Arnold, James E. (Technical Monitor)

2000-01-01

We have used airborne multispectral thermal infrared (TIR) remote sensing data collected at a high spatial resolution (i.e., 10m) over several cities in the United States to study thermal energy characteristics of the urban landscape. These TIR data provide a unique opportunity to quantify thermal responses from discrete surfaces typical of the urban landscape and to identify both the spatial arrangement and patterns of thermal processes across the city. The information obtained from these data is critical to understanding how urban surfaces drive or force development of the Urban Heat Island (UHI) effect, which exists as a dome of elevated air temperatures that presides over cities in contrast to surrounding non-urbanized areas. The UHI is most pronounced in the summertime where urban surfaces, such as rooftops and pavement, store solar radiation throughout the day, and release this stored energy slowly after sunset creating air temperatures over the city that are in excess of 2-4'C warmer in contrast with non-urban or rural air temperatures. The UHI can also exist as a daytime phenomenon with surface temperatures in downtown areas of cities exceeding 38'C. The implications of the UHI are significant, particularly as an additive source of thermal energy input that exacerbates the overall production of ground level ozone over cities. We have used the Airborne Thermal and Land Applications Sensor (ATLAS), flown onboard a Lear 23 jet aircraft from the NASA Stennis Space Center, to acquire high spatial resolution multispectral TIR data (i.e., 6 bandwidths between 8.2-12.2 (um) over Huntsville, Alabama, Atlanta, Georgia, Baton Rouge, Louisiana, Salt Lake City, Utah, and Sacramento, California. These TIR data have been used to produce maps and other products, showing the spatial distribution of heating and cooling patterns over these cities to better understand how the morphology of the urban landscape affects development of the UHI. In turn, these data have been used by government officials, urban planners, and other decision-makers, to make more informed decisions on how to mitigate the UHI and its subsequent impacts.

Prisms with total internal reflection as solar reflectors

DOEpatents

Rabl, Arnulf; Rabl, Veronika

1978-01-01

An improved reflective wall for radiant energy collection and concentration devices is provided. The wall is comprised of a plurality of prisms whose frontal faces are adjacent and which reflect the desired radiation by total internal reflection.

The optical-mechanical design of DMD modulation imaging device

NASA Astrophysics Data System (ADS)

Li, Tianting; Xu, Xiping; Qiao, Yang; Li, Lei; Pan, Yue

2014-09-01

In order to avoid the phenomenon of some image information were lost, which is due to the jamming signals, such as incident laser, make the pixels dot on CCD saturated. In this article a device of optical-mechanical structure was designed, which utilized the DMD (Digital Micro mirror Device) to modulate the image. The DMD reflection imaging optical system adopts the telecentric light path. However, because the design is not only required to guarantee a 66° angle between the optical axis of the relay optics and the DMD, but also to ensure that the optical axis of the projection system keeps parallel with the perpendicular bisector of the micro-mirror which is in the "flat" state, so the TIR prism is introduced，and making the relay optics and the DMD satisfy the optical institution's requirements. In this paper, a mechanical structure of the imaging optical system was designed and at the meanwhile the lens assembly has been well connected and fixed and fine-tuned by detailed structural design, which included the tilt decentered lens, wedge flanges, prisms. By optimizing the design, the issues of mutual restraint between the inverting optical system and the projecting system were well resolved, and prevented the blocking of the two systems. In addition, the structure size of the whole DMD reflection imaging optical system was minimized; it reduced the energy loss and ensured the image quality.

Comparison of outgassing models for the landsat thematic mapper sensors

USGS Publications Warehouse

Micijevic, E.; Chander, G.

2007-01-01

The Thematic Mapper (TM) is a multi-spectral electro-optical sensor featured onboard both the Landsat 4 (L4) and Landsat 5 (L5) satellites. TM sensors have seven spectral bands with center wavelengths of approximately 0.49, 0.56, 0.66, 0.83, 1.65, 11.5 and 2.21 ??m, respectively. The visible near-infrared (VNIR) bands are located on the primary focal plane (PFP), and two short-wave infrared (SWIR) bands and the thermal infrared (TIR) band are located on the cold focal plane (CFP). The CFP bands are maintained at cryogenic temperatures of about 91 K, to reduce thermal noise effects. Due to the cold temperature, an ice film accumulates on the CFP dewar window, which introduces oscillations in SWIR and an exponential decay in TIR band responses. This process is usually monitored and characterized by the detector responses to the internal calibrator (IC) lamps and the blackbody. The ice contamination on the dewar window is an effect of the sensor outgassing in a vacuum of the space environment. Outgassing models have been developed, which are based on the thin-film optical interference phenomenon. They provide the coefficients for correction for outgassing effects for the entire mission's lifetime. While the L4 TM ceased imaging in August 1993, the L5 TM continues to operate even after more than 23 years in orbit. The process of outgassing in L5 TM is still occurring, though at a much lower rate than during early years of mission. Although the L4 and L5 TM sensors are essentially identical, they exhibit slightly different responses to the outgassing effects. The work presented in the paper summarizes the results of modeling outgassing effects in each of the sensors and provides a detailed analysis of differences among the estimated modeling parameters. For both sensors, water ice was confirmed as a reasonable candidate for contaminant material, the contaminant growth rate was found to be gradually decreasing with the time since launch, and the indications exist that some film may remain after the CFP warm-up procedures, which are periodically initiated to remove accumulated contamination. The observed difference between the models could be contributed to differences in the operational history for the sensors, the content and amount of contaminant impurities, the sensor spectral filter responses, and the internal calibrator systems.

Advanced microwave soil moisture studies. [Big Sioux River Basin, Iowa

NASA Technical Reports Server (NTRS)

Dalsted, K. J.; Harlan, J. C.

1983-01-01

Comparisons of low level L-band brightness temperature (TB) and thermal infrared (TIR) data as well as the following data sets: soil map and land cover data; direct soil moisture measurement; and a computer generated contour map were statistically evaluated using regression analysis and linear discriminant analysis. Regression analysis of footprint data shows that statistical groupings of ground variables (soil features and land cover) hold promise for qualitative assessment of soil moisture and for reducing variance within the sampling space. Dry conditions appear to be more conductive to producing meaningful statistics than wet conditions. Regression analysis using field averaged TB and TIR data did not approach the higher sq R values obtained using within-field variations. The linear discriminant analysis indicates some capacity to distinguish categories with the results being somewhat better on a field basis than a footprint basis.

Characterization of Resistance Gene Analogues (RGAs) in Apple (Malus × domestica Borkh.) and Their Evolutionary History of the Rosaceae Family

PubMed Central

Baldo, Angela; Righetti, Laura; Bailey, Aubrey; Fontana, Paolo; Velasco, Riccardo; Malnoy, Mickael

2014-01-01

The family of resistance gene analogues (RGAs) with a nucleotide-binding site (NBS) domain accounts for the largest number of disease resistance genes and is one of the largest gene families in plants. We have identified 868 RGAs in the genome of the apple (Malus × domestica Borkh.) cultivar ‘Golden Delicious’. This represents 1.51% of the total number of predicted genes for this cultivar. Several evolutionary features are pronounced in M. domestica, including a high fraction (80%) of RGAs occurring in clusters. This suggests frequent tandem duplication and ectopic translocation events. Of the identified RGAs, 56% are located preferentially on six chromosomes (Chr 2, 7, 8, 10, 11, and 15), and 25% are located on Chr 2. TIR-NBS and non-TIR-NBS classes of RGAs are primarily exclusive of different chromosomes, and 99% of non-TIR-NBS RGAs are located on Chr 11. A phylogenetic reconstruction was conducted to study the evolution of RGAs in the Rosaceae family. More than 1400 RGAs were identified in six species based on their NBS domain, and a neighbor-joining analysis was used to reconstruct the phylogenetic relationships among the protein sequences. Specific phylogenetic clades were found for RGAs of Malus, Fragaria, and Rosa, indicating genus-specific evolution of resistance genes. However, strikingly similar RGAs were shared in Malus, Pyrus, and Prunus, indicating high conservation of specific RGAs and suggesting a monophyletic origin of these three genera. PMID:24505246

Characterization of resistance gene analogues (RGAs) in apple (Malus × domestica Borkh.) and their evolutionary history of the Rosaceae family.

PubMed

Perazzolli, Michele; Malacarne, Giulia; Baldo, Angela; Righetti, Laura; Bailey, Aubrey; Fontana, Paolo; Velasco, Riccardo; Malnoy, Mickael

2014-01-01

The family of resistance gene analogues (RGAs) with a nucleotide-binding site (NBS) domain accounts for the largest number of disease resistance genes and is one of the largest gene families in plants. We have identified 868 RGAs in the genome of the apple (Malus × domestica Borkh.) cultivar 'Golden Delicious'. This represents 1.51% of the total number of predicted genes for this cultivar. Several evolutionary features are pronounced in M. domestica, including a high fraction (80%) of RGAs occurring in clusters. This suggests frequent tandem duplication and ectopic translocation events. Of the identified RGAs, 56% are located preferentially on six chromosomes (Chr 2, 7, 8, 10, 11, and 15), and 25% are located on Chr 2. TIR-NBS and non-TIR-NBS classes of RGAs are primarily exclusive of different chromosomes, and 99% of non-TIR-NBS RGAs are located on Chr 11. A phylogenetic reconstruction was conducted to study the evolution of RGAs in the Rosaceae family. More than 1400 RGAs were identified in six species based on their NBS domain, and a neighbor-joining analysis was used to reconstruct the phylogenetic relationships among the protein sequences. Specific phylogenetic clades were found for RGAs of Malus, Fragaria, and Rosa, indicating genus-specific evolution of resistance genes. However, strikingly similar RGAs were shared in Malus, Pyrus, and Prunus, indicating high conservation of specific RGAs and suggesting a monophyletic origin of these three genera.

The contribution of Landsat 8 TIRS sensor data to the identification of plastic covered vineyards

NASA Astrophysics Data System (ADS)

Novelli, Antonio; Tarantino, Eufemia

2015-06-01

Plastic covering is a common practice in agricultural fields. From an agronomic point of view, plastic coverings offer many advantages against unfavourable growing conditions. This explains their widespread utilization with consequent positive impact on local economy. On the other hand, plasticulture raises both environmental and landscape issues. In the Apulia Region (Italy) the wide implementation of such practice generally relates to vineyard cultivation. Continuous vineyard protection has resulted in negative effects on the hydrogeological balance of soils, causing a deep modification of the traditional rural landscape and therefore affecting its quality. To guarantee both the protection of local economy as well as the preservation of local environment and landscape features, a detailed site mapping of the areas involved is necessary. Indeed, the quantification of this phenomenon is essential in the periodic updating of the existing land use database and in the development of local policies. In this study we evaluate the potential of the novel Thermal Infrared Sensor bands (TIRS) provided by the LANDSAT 8 mission in plasticulture discrimination. Using the evident anomaly retrieved in the study area on the Quality Assessment (QA) band, a fast procedure involving TIRS data was developed, proposing a new index (Plastic Surface Index- PSI) able to emphasize plasticulture. For the aim of this study, two different acquisition dates on a test area in the Apulia region (Italy) were analyzed, one in the growing season with high plastic covering density and one in the post-harvest period with low plastic cover density.

Intranasal immunization with novel EspA-Tir-M fusion protein induces protective immunity against enterohemorrhagic Escherichia coli O157:H7 challenge in mice.

PubMed

Lin, Ruqin; Zhu, Bo; Zhang, Yiduo; Bai, Yang; Zhi, Fachao; Long, Beiguo; Li, Yawen; Wu, Yuhua; Wu, Xianbo; Fan, Hongying

2017-04-01

Enterohemorrhagic Escherichia coli (EHEC) O157:H7 causes hemorrhagic colitis and hemolytic uremic syndrome in humans. Due to the risks associated with antibiotic treatment against EHEC O157:H7 infection, vaccines represent a promising method for prevention of EHEC O157:H7 infection. Therefore, we constructed the novel bivalent antigen EspA-Tir-M as a candidate EHEC O157:H7 subunit vaccine. We then evaluated the immunogenicity of this novel EHEC O157:H7 subunit vaccine. Immune responses to the fusion protein administered by intranasal and subcutaneous routes were compared in mice. Results showed higher levels of specific mucosal and systemic antibody responses induced by intranasal as compared to subcutaneous immunization. Intranasal immunization enhanced the concentration of interleukin-4, interleukin-10, and interferon-γ, while subcutaneous immunization enhanced only the latter two. In addition, intranasal immunization protected against EHEC O157:H7 colonization and infection in mice at a rate of 90%.Histopathological analysis revealed that vaccination reduced colon damage, especially when administered intranasally. In contrast, subcutaneous immunization elicited a weak immune response and exhibited a low protection rate. These findings demonstrate that intranasal immunization with the fusion protein induces both humoral and cellular immune (Th1/Th2) responses in mice. The novel EspA-Tir-M novel fusion protein therefore represents a promising subunit vaccine against EHEC O157:H7 infection. Copyright © 2017 Elsevier Ltd. All rights reserved.

Comparative Analysis of the Flax Immune Receptors L6 and L7 Suggests an Equilibrium-Based Switch Activation Model

PubMed Central

Chen, Chunhong; Newell, Kim; Lawrence, Gregory J.; Ellis, Jeffrey G.; Anderson, Peter A.; Dodds, Peter N.

2016-01-01

NOD-like receptors (NLRs) are central components of the plant immune system. L6 is a Toll/interleukin-1 receptor (TIR) domain-containing NLR from flax (Linum usitatissimum) conferring immunity to the flax rust fungus. Comparison of L6 to the weaker allele L7 identified two polymorphic regions in the TIR and the nucleotide binding (NB) domains that regulate both effector ligand-dependent and -independent cell death signaling as well as nucleotide binding to the receptor. This suggests that a negative functional interaction between the TIR and NB domains holds L7 in an inactive/ADP-bound state more tightly than L6, hence decreasing its capacity to adopt the active/ATP-bound state and explaining its weaker activity in planta. L6 and L7 variants with a more stable ADP-bound state failed to bind to AvrL567 in yeast two-hybrid assays, while binding was detected to the signaling active variants. This contrasts with current models predicting that effectors bind to inactive receptors to trigger activation. Based on the correlation between nucleotide binding, effector interaction, and immune signaling properties of L6/L7 variants, we propose that NLRs exist in an equilibrium between ON and OFF states and that effector binding to the ON state stabilizes this conformation, thereby shifting the equilibrium toward the active form of the receptor to trigger defense signaling. PMID:26744216

[Prediction of School Dropout among Turkish High School Students: A Model Testing with Moderator and Mediator Variables.

PubMed

Ozer, Arif; Gençtanirim, Dilek; Ergene, Tuncay

2011-01-01

Bu araştırmada ilk olarak, dürtüsel davranma ile okulu terk etme riski arasındaki ilişkiye disiplin cezası almanın, antisosyal davranışların ve sigara-alkol kullanımının aracılık edip etmediği incelenmiştir. İkinci olarak, öğretmen desteği ve antisosyal davranış etkileşiminin okulu terk etme riski üzerindeki etkisi test edilmiştir. Araştırma grubunu 2009-2010 yılında Ankara İlinde genel liselere devam eden 478 öğrenci oluşturmuştur. Sonuçlar okulu terk etme riskini aile ve arkadaş desteğinin azalttığını, dürtüsel davranmanın ise artırdığını göstermiştir. Ayrıca disiplin cezası, alkol-sigara kullanma ve antisosyal davranışlar okulu terk etme riskini artıran aracı değişkenlerdir. Antisosyal davranışlarla okulu terk etme arasındaki ilişki öğretmen desteğine bağlı olarak değişmektedir. Öğrencilerin cinsiyet ve başarıları ile okulu terk etme riskleri arasında anlamlı bir ilişki bulunmamaktadır.

Flame filtering and perimeter localization of wildfires using aerial thermal imagery

NASA Astrophysics Data System (ADS)

Valero, Mario M.; Verstockt, Steven; Rios, Oriol; Pastor, Elsa; Vandecasteele, Florian; Planas, Eulàlia

2017-05-01

Airborne thermal infrared (TIR) imaging systems are being increasingly used for wild fire tactical monitoring since they show important advantages over spaceborne platforms and visible sensors while becoming much more affordable and much lighter than multispectral cameras. However, the analysis of aerial TIR images entails a number of difficulties which have thus far prevented monitoring tasks from being totally automated. One of these issues that needs to be addressed is the appearance of flame projections during the geo-correction of off-nadir images. Filtering these flames is essential in order to accurately estimate the geographical location of the fuel burning interface. Therefore, we present a methodology which allows the automatic localisation of the active fire contour free of flame projections. The actively burning area is detected in TIR georeferenced images through a combination of intensity thresholding techniques, morphological processing and active contours. Subsequently, flame projections are filtered out by the temporal frequency analysis of the appropriate contour descriptors. The proposed algorithm was tested on footages acquired during three large-scale field experimental burns. Results suggest this methodology may be suitable to automatise the acquisition of quantitative data about the fire evolution. As future work, a revision of the low-pass filter implemented for the temporal analysis (currently a median filter) was recommended. The availability of up-to-date information about the fire state would improve situational awareness during an emergency response and may be used to calibrate data-driven simulators capable of emitting short-term accurate forecasts of the subsequent fire evolution.

Repurposed transcriptomic data facilitate discovery of innate immunity toll-like receptor (TLR) Genes across Lophotrochozoa.

PubMed

Halanych, Kenneth M; Kocot, Kevin M

2014-10-01

The growing volume of genomic data from across life represents opportunities for deriving valuable biological information from data that were initially collected for another purpose. Here, we use transcriptomes collected for phylogenomic studies to search for toll-like receptor (TLR) genes in poorly sampled lophotrochozoan clades (Annelida, Mollusca, Brachiopoda, Phoronida, and Entoprocta) and one ecdysozoan clade (Priapulida). TLR genes are involved in innate immunity across animals by recognizing potential microbial infection. They have an extracellular leucine-rich repeat (LRR) domain connected to a transmembrane domain and an intracellular toll/interleukin-1 receptor (TIR) domain. Consequently, these genes are important in initiating a signaling pathway to trigger defense. We found at least one TLR ortholog in all but two taxa examined, suggesting that a broad array of lophotrochozoans may have innate immune systems similar to those observed in vertebrates and arthropods. Comparison to the SMART database confirmed the presence of both the LRR and the TIR protein motifs characteristic of TLR genes. Because we looked at only one transcriptome per species, discovery of TLR genes was limited for most taxa. However, several TRL-like genes that vary in the number and placement of LRR domains were found in phoronids. Additionally, several contigs contained LRR domains but lacked TIR domains, suggesting they were not TLRs. Many of these LRR-containing contigs had other domains (e.g., immunoglobin) and are likely involved in innate immunity. © 2014 Marine Biological Laboratory.

High pre-transplant soluble CD30 levels are predictive of the grade of rejection.

PubMed

Rajakariar, Ravindra; Jivanji, Naina; Varagunam, Mira; Rafiq, Mohammad; Gupta, Arun; Sheaff, Michael; Sinnott, Paul; Yaqoob, M M

2005-08-01

In renal transplantation, serum soluble CD30 (sCD30) levels in graft recipients are associated with increased rejection and graft loss. We investigated whether pre-transplant sCD30 concentrations are predictive of the grade of rejection. Pre-transplant sera of 51 patients with tubulointerstitial rejection (TIR), 16 patients with vascular rejection (VR) and an age-matched control group of 41 patients with no rejection (NR) were analyzed for sCD30. The transplant biopsies were immunostained for C4d. The median sCD30 level was significantly elevated in the group with VR (248 Units (U)/mL, range: 92-802) when compared with TIR (103 U/mL, range: 36-309, p<0.001) and NR (179 U/mL, range: 70-343, p<0.03). Moreover, patients with TIR had significantly lower sCD30 levels compared to NR. Based on C4d staining, a TH2 driven process, the median sCD30 levels were significantly raised in C4d+ patients compared with C4d- group (177 U/mL vs. 120 U/mL, p<0.05). sCD30 levels measured at time of transplantation correlate with the grade of rejection. High pre-transplant levels are associated with antibody-mediated rejection which carries a poorer prognosis. sCD30 could be another tool to assess immunological risk prior to transplantation and enable a patient centered approach to immunosuppression.

Direct Role for the Rpd3 Complex in Transcriptional Induction of the Anaerobic DAN/TIR Genes in Yeast▿‡

PubMed Central

Sertil, Odeniel; Vemula, Arvind; Salmon, Sharon L.; Morse, Randall H.; Lowry, Charles V.

2007-01-01

Saccharomyces cerevisiae adapts to hypoxia by expressing a large group of “anaerobic” genes. Among these, the eight DAN/TIR genes are regulated by the repressors Rox1 and Mot3 and the activator Upc2/Mox4. In attempting to identify factors recruited by the DNA binding repressor Mot3 to enhance repression of the DAN/TIR genes, we found that the histone deacetylase and global repressor complex, Rpd3-Sin3-Sap30, was not required for repression. Strikingly, the complex was instead required for activation. In addition, the histone H3 and H4 amino termini, which are targets of Rpd3, were also required for DAN1 expression. Epistasis tests demonstrated that the Rpd3 complex is not required in the absence of the repressor Mot3. Furthermore, the Rpd3 complex was required for normal function and stable binding of the activator Upc2 at the DAN1 promoter. Moreover, the Swi/Snf chromatin remodeling complex was strongly required for activation of DAN1, and chromatin immunoprecipitation analysis showed an Rpd3-dependent reduction in DAN1 promoter-associated nucleosomes upon induction. Taken together, these data provide evidence that during anaerobiosis, the Rpd3 complex acts at the DAN1 promoter to antagonize the chromatin-mediated repression caused by Mot3 and Rox1 and that chromatin remodeling by Swi/Snf is necessary for normal expression. PMID:17210643

Field study of a shredded-tire embankment in Virginia.

DOT National Transportation Integrated Search

2004-01-01

In response to increased environmental concerns, the Virginia Department of Transportation, with the support of the Virginia Department of Environmental Quality, developed an experimental project designed to test the feasibility of using shredded tir...

Special Opportunities for Highly Sampled Areas

NASA Technical Reports Server (NTRS)

Knox, Robert G.

2010-01-01

This slide presentation reviews the coverage areas for the two instruments that are scheduled to be on board the HyspIRI mission, (i.e.,visible to short wave infrared (VSWIR) and a multispectral thermal infrared (TIR) imager.)

Measurement of Ecosystem Metabolism across Climatic and Vegetation Gradients in California

NASA Astrophysics Data System (ADS)

DuBois, S.; Serbin, S.; Desai, A. R.; Kruger, E.; Kingdon, C.; Goulden, M.; Townsend, P. A.

2013-12-01

Terrestrial ecosystem models require information on vegetation structure, phenology, demographics, biochemistry, radiation properties, and physiology in order to accurately simulate the responses of ecosystem functioning to global change and disturbances. These models generally depend on a small number of intensive, fine-scaled point-based measurements from eddy covariance towers, detailed vegetation surveys, literature values, and site-scale data assimilation techniques to improve model calibration. However, the limited geographic and/or temporal scope of measurements can lead to inadequate model generalizations of modeled carbon (C), water, and energy fluxes across broad regions and relevant time periods. Remote sensing approaches, particularly imaging spectroscopy (IS) and thermal infrared (TIR) data, have the potential to provide the broad-scale spatial and temporal dynamics in many important vegetation properties related to ecosystem functioning. As part of the ongoing NASA HyspIRI Airborne Campaign (http://hyspiri.jpl.nasa.gov/airborne) we are assessing the potential of IS+TIR to generate spatially explicit estimates of two important parameters characterizing plant photosynthetic capacity: the maximum rate of CO2 carboxylation by RuBisCo (Vcmax), and the maximum rate of electron transport required for the regeneration of RuBP needed in Calvin Cycle processes (Jmax). These estimates are based on recent evidence that both properties can be predicted at the leaf level using spectroscopy techniques (Ainsworth et al. 2013 [http://tinyurl.com/n5xnzjg]; Serbin et al. 2012 [http://tinyurl.com/mhocmlz]). It follows that estimation of these variables from remotely sensed IS+TIR (i.e. AVIRIS & MASTER) could facilitate the prediction of seasonal C assimilation across large areas using data from the anticipated HyspIRI satellite mission. Our research focuses on two climate-elevation transects in California, which span a vegetation gradient from coastal sage and chaparral to oak woodlands and closed-canopy coniferous forests, as well as agro-ecosystems located throughout the Central and Imperial Valleys. We are also comparing remotely sensed estimates of ecosystem photosynthetic capacity with C flux data from a series of 10 eddy covariance towers. Results from the 2013 field season highlight the large range in sampled vegetation structure, optical properties (i.e. reflectance and transmittance) and physiology (i.e. Vcmax, Jmax, and cholorphyll fluorescence). Using approaches similar to Serbin et al. (2012) we have confirmed the ability of spectroscopy to estimate Vcmax and Jmax across these diverse and structurally complex vegetation types. Ecosystem products, such as gross primary productivity, estimated from flux towers highlight the relationship between climatic parameters and vegetation productivity. Multiple data-years allow this relationship to be examined under various climatic forcings including drought and heat stress. Based on these preliminary results, our next step is to scale leaf-level information to AVIRIS footprints using radiative transfer and statistical modeling approaches with ecosystem modeling in order to assess the IS data products against flux tower observations.

Small-displacement sensing system based on multiple total internal reflections in heterodyne interferometry.

PubMed

Wang, Shinn-Fwu; Chiu, Ming-Hung; Chen, Wei-Wu; Kao, Fu-Hsi; Chang, Rong-Seng

2009-05-01

A small-displacement sensing system based on multiple total internal reflections in heterodyne interferometry is proposed. In this paper, a small displacement can be obtained only by measuring the variation in phase difference between s- and p-polarization states for the total internal reflection effect. In order to improve the sensitivity, we increase the number of total internal reflections by using a parallelogram prism. The theoretical resolution of the method is better than 0.417 nm. The method has some merits, e.g., high resolution, high sensitivity, and real-time measurement. Also, its feasibility is demonstrated.

Evaluation from 3-Years Time Serie of Daily Actual Evapotranspiration over the Tibetan Plateau

NASA Astrophysics Data System (ADS)

Faivre, R.; Menenti, M.

2016-08-01

The estimation of turbulent uxes is of primary interest for hydrological and climatological studies. Also the use of optical remote sensing data in the VNIR and TIR domain already proved to allow for the parameterization of surface energy balance, leading to many algorithms. Their use over arid high elevation areas require detailed characterisation of key surface physical properties and atmospheric statement at a reference level. Satellite products aquired over the Tibetan Plateau and simulations results delivered in the frame of the CEOP-AEGIS project provide incentives for a regular analysis at medium scale.This work aims at evaluating the use Feng-Yun 2 series and MODIS data (VNIR and TIR) for land surface evapotranspiration (ET) daily mapping based on SEBI algorithm, over the whole Tibetan Plateau (Faivre, 2014). An evaluation is performed over some reference sites set-up through the Tibetan Plateau.

Thermal airborne multispectral aster simulator and its preliminary results

NASA Astrophysics Data System (ADS)

Mills, F.; Kannari, Y.; Watanabe, H.; Sano, M.; Chang, S. H.

1994-03-01

An Airborne ASTER Simulator (AAS) is being developed for the Japan Resources Observation System Organization (JAROS) by the Geophysical Environmental Research (GER) Corporation. The first test flights of the AAS were over Cuprite, Nevada; Long Valley, California; and Death Valley, California, in December 1991. Preliminary laboratory tests at NASA's Stennis Space Center (SSC) were completed in April 1992. The results of the these tests indicate the AAS can discriminate between silicate and non-silicate rocks. The improvements planned for the next two years may give a spectral Full-Width at Half-Maximum (FWHM) of 0.3 μm and NEΔT of 0.2 - 0.5°K. The AAS has the potential to become a good tool for airborne TIR research and can be used for simulations of future satellite-borne TIR sensors. Flight tests over Cuprite, Nevada, and Castaic Lake, California, are planned for October-December 1992.

Examples of Level Products Possible from Existing Assets

NASA Technical Reports Server (NTRS)

Quattrochi, Dale A.

2012-01-01

How do patterns of human environmental and infectious diseases respond to leading environmental changes, particularly to urban growth and change and the associated impacts of urbanization? We use HyspIRI high spatial resolution, multispectral, and multitemporal TIR data to track energy balance and energy flux characteristics for changing land covers/land uses through time to provide synoptic views of impacts on surface energy fluxes, emissivity and temperature and HyspIRI data in conjunction with spatial growth models to project land cover/land use changes in the future to assess impacts on natural and human ecosystems. We use multispectral thermal IR land cover maps at a high spatial resolution (60m) on a weekly basis for long-term validation of surface energy responses and changes in emissivity and integration of HyspIRI TIR data with spatial modeling to assess changes in land cover/land use through time and subsequent changes in thermal energy responses

Increased plasma pancreatic polypeptide in chronic alcohol abuse.

PubMed

Fink, R S; Adrian, T E; Margot, D H; Bloom, S R

1983-04-01

Post-prandial plasma gastrointestinal hormone profiles were measured in nine chronic alcoholics, one and fourteen days after complete alcohol withdrawal. Basal plasma pancreatic polypeptide concentration (PP--mean +/- SE mean) was significantly greater in alcoholics (control, 28 +/- 5 pmol/l; alcoholics, post-withdrawal day 1, 62 +/- 14 pmol/l, P less than 0.05; and post-withdrawal day 14, 89 +/- 17 pmol/1, P less than 0.005). The total integrated (TIR) PP response following a test breakfast was similarly elevated (control, 442 +/- 63 units; alcoholics, day 1, 1310 +/- 231 units, P less than 0.005; day 14,1066 +/- 66, P less than 0.005). Basal and TIR values for gastrin, gastric inhibitory peptide, insulin and glucagon were similar in alcoholics and controls. As PP has been shown to inhibit pancreatic exocrine enzyme secretion, these findings may help explain the abnormal pancreatic function seen frequently in alcoholics.

A novel technique to monitor thermal discharges using thermal infrared imaging.

PubMed

Muthulakshmi, A L; Natesan, Usha; Ferrer, Vincent A; Deepthi, K; Venugopalan, V P; Narasimhan, S V

2013-09-01

Coastal temperature is an important indicator of water quality, particularly in regions where delicate ecosystems sensitive to water temperature are present. Remote sensing methods are highly reliable for assessing the thermal dispersion. The plume dispersion from the thermal outfall of the nuclear power plant at Kalpakkam, on the southeast coast of India, was investigated from March to December 2011 using thermal infrared images along with field measurements. The absolute temperature as provided by the thermal infrared (TIR) images is used in the Arc GIS environment for generating a spatial pattern of the plume movement. Good correlation of the temperature measured by the TIR camera with the field data (r(2) = 0.89) make it a reliable method for the thermal monitoring of the power plant effluents. The study portrays that the remote sensing technique provides an effective means of monitoring the thermal distribution pattern in coastal waters.

Using Video Records to Mediate Teaching Interns' Critical Reflection

ERIC Educational Resources Information Center

Scott, Sarah E.; Kucan, Linda; Correnti, Richard; Miller, Leigh A.

2013-01-01

In this study we investigated how the use of video records in a literacy methods course supports the development of reflective practitioners when video is a core element of the course design. Specifically, we detail how interns' video-based reflections provide evidence that the use of video records of teaching interns' promotes the development of…

Jittery, a Mutator Distant Relative with a Paradoxical Mobile Behavior: Excision without Reinsertion

PubMed Central

Xu, Zhennan; Yan, Xianghe; Maurais, Steve; Fu, Huihua; O'Brien, David G.; Mottinger, John; Dooner, Hugo K.

2004-01-01

The unstable mutation bz-m039 arose in a maize (Zea mays) stock that originated from a plant infected with barley stripe mosaic virus. The instability of the mutation is caused by a 3.9-kb mobile element that has been named Jittery (Jit). Jit has terminal inverted repeats (TIRs) of 181 bp, causes a 9-bp direct duplication of the target site, and appears to excise autonomously. It is predicted to encode a single 709–amino acid protein, JITA, which is distantly related to the MURA transposase protein of the Mutator system but is more closely related to the MURA protein of Mutator-like elements (MULEs) from Arabidopsis thaliana and rice (Oryza sativa). Like MULEs, Jit resembles Mutator in the length of the element's TIRs, the size of the target site duplication, and in the makeup of its transposase but differs from the autonomous element Mutator–Don Robertson in that it encodes a single protein. Jit also differs from Mutator elements in the high frequency with which it excises to produce germinal revertants and in its copy number in the maize genome: Jit-like TIRs are present at low copy number in all maize lines and teosinte accessions examined, and JITA sequences occur in only a few maize inbreds. However, Jit cannot be considered a bona fide transposon in its present host line because it does not leave footprints upon excision and does not reinsert in the genome. These unusual mobile element properties are discussed in light of the structure and gene organization of Jit and related elements. PMID:15075398

Improved Remote Sensing Retrieval of Land Surface Temperature in the Thermal Infrared (TIR) Using Visible/Short Wave Infrared (VSWIR) Imaging Spectrometer Estimated Water Vapor

NASA Astrophysics Data System (ADS)

Grigsby, S.; Hulley, G. C.; Roberts, D. A.; Scheele, C. J.; Ustin, S.; Alsina, M. M.

2014-12-01

Land surface temperature (LST) is an important parameter in many ecological studies, where processes such as evapotranspiration have impacts at temperature gradients less than 1 K. Current errors in standard MODIS and ASTER LST products are greater than 1 K, and for ASTER can be greater than 2 K in humid conditions due to incomplete atmospheric correction of atmospheric water vapor. Estimates of water vapor, either derived from visible-to-shortwave-infrared (VSWIR) remote sensing data or taken from weather simulation data such as NCEP, can be combined with coincident Thermal-Infrared (TIR) remote sensing data to yield improved accuracy in LST measurements. This study compares LST retrieval accuracies derived using the standard JPL MASTER Temperature Emissivity Separation (TES) algorithm, and the Water Vapor Scaling (WVS) atmospheric correction method proposed for the Hyperspectral Infrared Imager, or HyspIRI, mission with ground observations. The 2011 ER-2 Delano/Lost Hills flights acquired TIR data from the MODIS/ASTER Simulator (MASTER) and VSWIR data from Airborne Visible InfraRed Imaging Spectrometer (AVIRIS) instruments flown concurrently. The TES and WVS retrieval methods are run with and without high spatial resolution AVIRIS-derived water vapor maps to assess the improvement using VSWIR water vapor estimates. We find improvement using VSWIR derived water vapor maps in both cases, with the WVS method being most accurate overall. For closed canopy agricultural vegetation we observed canopy temperature retrieval RMSEs of 0.49 K and 0.70 K using the WVS method on MASTER data with and without AVIRIS derived water vapor, respectively.

Türk Lise Öğrencilerinde Okul Terkinin Yordanması: Aracı ve Etkileşim Değişkenleri ile Bir Model Testi

PubMed Central

Özer, Arif; Gençtanirim, Dilek; Ergene, Tuncay

2011-01-01

Bu araştırmada ilk olarak, dürtüsel davranma ile okulu terk etme riski arasındaki ilişkiye disiplin cezası almanın, antisosyal davranışların ve sigara-alkol kullanımının aracılık edip etmediği incelenmiştir. İkinci olarak, öğretmen desteği ve antisosyal davranış etkileşiminin okulu terk etme riski üzerindeki etkisi test edilmiştir. Araştırma grubunu 2009-2010 yılında Ankara İlinde genel liselere devam eden 478 öğrenci oluşturmuştur. Sonuçlar okulu terk etme riskini aile ve arkadaş desteğinin azalttığını, dürtüsel davranmanın ise artırdığını göstermiştir. Ayrıca disiplin cezası, alkol-sigara kullanma ve antisosyal davranışlar okulu terk etme riskini artıran aracı değişkenlerdir. Antisosyal davranışlarla okulu terk etme arasındaki ilişki öğretmen desteğine bağlı olarak değişmektedir. Öğrencilerin cinsiyet ve başarıları ile okulu terk etme riskleri arasında anlamlı bir ilişki bulunmamaktadır. PMID:22003257

Application of Thermal Infrared Remote Sensing for Quantitative Evaluation of Crop Characteristics

NASA Technical Reports Server (NTRS)

Shaw, J.; Luvall, J.; Rickman, D.; Mask, P.; Wersinger, J.; Sullivan, D.; Arnold, James E. (Technical Monitor)

2002-01-01

Evidence suggests that thermal infrared emittance (TIR) at the field-scale is largely a function of the integrated crop/soil moisture continuum. Because soil moisture dynamics largely determine crop yields in non-irrigated farming (85 % of Alabama farms are non-irrigated), TIR may be an effective method of mapping within field crop yield variability, and possibly, absolute yields. The ability to map yield variability at juvenile growth stages can lead to improved soil fertility and pest management, as well as facilitating the development of economic forecasting. Researchers at GHCC/MSFC/NASA and Auburn University are currently investigating the role of TIR in site-specific agriculture. Site-specific agriculture (SSA), or precision farming, is a method of crop production in which zones and soils within a field are delineated and managed according to their unique properties. The goal of SSA is to improve farm profits and reduce environmental impacts through targeted agrochemical applications. The foundation of SSA depends upon the spatial and temporal characterization of soil and crop properties through the creation of management zones. Management zones can be delineated using: 1) remote sensing (RS) data, 2) conventional soil testing and soil mapping, and 3) yield mapping. Portions of this research have concentrated on using remote sensing data to map yield variability in corn (Zea mays L.) and soybean (Glycine max L.) crops. Remote sensing data have been collected for several fields in the Tennessee Valley region at various crop growth stages during the last four growing seasons. Preliminary results of this study will be presented.

Landsat's TIRS Instrument

NASA Image and Video Library

2017-12-08

The Thermal Infrared Sensor (TIRS) will fly on the next Landsat satellite, the Landsat Data Continuity Mission (LDCM). The right side of the instrument is what's called the 'nadir side,' that's the side that points toward Earth when the instrument is in space. The black circle visible on the right side is where the optics for the instrument are located. In that area are the lens and the detectors. The white area is a radiator that radiates heat to keep the telescope and the detector cool. The black hole on the white area on the left is what the satellite operators point to deep space when they calibrate the instrument to the cold temperatures of space. TIRS was built on an accelerated schedule at NASA's Goddard Space Flight Center, Greenbelt, Md. and will now be integrated into the LDCM spacecraft at Orbital Science Corp. in Gilbert, Ariz. The Landsat Program is a series of Earth observing satellite missions jointly managed by NASA and the U.S. Geological Survey. Landsat satellites have been consistently gathering data about our planet since 1972. They continue to improve and expand this unparalleled record of Earth's changing landscapes for the benefit of all. For more information on Landsat, visit: www.nasa.gov/landsat Credit: NASA/GSFC/Rebecca Roth NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Divergence and Conservative Evolution of XTNX Genes in Land Plants.

PubMed

Zhang, Yan-Mei; Xue, Jia-Yu; Liu, Li-Wei; Sun, Xiao-Qin; Zhou, Guang-Can; Chen, Min; Shao, Zhu-Qing; Hang, Yue-Yu

2017-01-01

The Toll-interleukin-1 receptor (TIR) and Nucleotide-binding site (NBS) domains are two major components of the TIR-NBS-leucine-rich repeat family plant disease resistance genes. Extensive functional and evolutionary studies have been performed on these genes; however, the characterization of a small group of genes that are composed of atypical TIR and NBS domains, namely XTNX genes, is limited. The present study investigated this specific gene family by conducting genome-wide analyses of 59 green plant genomes. A total of 143 XTNX genes were identified in 51 of the 52 land plant genomes, whereas no XTNX gene was detected in any green algae genomes, which indicated that XTNX genes originated upon emergence of land plants. Phylogenetic analysis revealed that the ancestral XTNX gene underwent two rounds of ancient duplications in land plants, which resulted in the formation of clades I/II and clades IIa/IIb successively. Although clades I and IIb have evolved conservatively in angiosperms, the motif composition difference and sequence divergence at the amino acid level suggest that functional divergence may have occurred since the separation of the two clades. In contrast, several features of the clade IIa genes, including the absence in the majority of dicots, the long branches in the tree, the frequent loss of ancestral motifs, and the loss of expression in all detected tissues of Zea mays , all suggest that the genes in this lineage might have undergone pseudogenization. This study highlights that XTNX genes are a gene family originated anciently in land plants and underwent specific conservative pattern in evolution.

Estimation of leaf water contents from mid- and thermal infrared spectra by coupling genetic algorithm and partial least squares regression

NASA Astrophysics Data System (ADS)

Arshad, Muhammad; Ullah, Saleem; Khurshid, Khurram; Ali, Asad

2017-10-01

Leaf Water Content (LWC) is an essential constituent of plant leaves that determines vegetation heath and its productivity. An accurate and on-time measurement of water content is crucial for planning irrigation, forecasting drought and predicting woodland fire. The retrieval of LWC from Visible to Shortwave Infrared (VSWIR: 0.4-2.5 μm) has been extensively investigated but little has been done in the Mid and Thermal Infrared (MIR and TIR: 2.50 -14.0 μm), windows of electromagnetic spectrum. This study is mainly focused on retrieval of LWC from Mid and Thermal Infrared, using Genetic Algorithm integrated with Partial Least Square Regression (PLSR). Genetic Algorithm fused with PLSR selects spectral wavebands with high predictive performance i.e., yields high adjusted-R2 and low RMSE. In our case, GA-PLSR selected eight variables (bands) and yielded highly accurate models with adjusted-R2 of 0.93 and RMSEcv equal to 7.1 %. The study also demonstrated that MIR is more sensitive to the variation in LWC as compared to TIR. However, the combined use of MIR and TIR spectra enhances the predictive performance in retrieval of LWC. The integration of Genetic Algorithm and PLSR, not only increases the estimation precision by selecting the most sensitive spectral bands but also helps in identifying the important spectral regions for quantifying water stresses in vegetation. The findings of this study will allow the future space missions (like HyspIRI) to position wavebands at sensitive regions for characterizing vegetation stresses.

Phase Retrieval on Undersampled Data from the Thermal Infrared Sensor (TIRS)

NASA Technical Reports Server (NTRS)

Bolcar, Matthew R.; Mentzell, Eric

2011-01-01

Phase retrieval was applied to under-sampled data from a thermal infrared imaging system to estimate defocus across the field of view (FOV). We compare phase retrieval estimated values to those obtained using an independent technique.

On the use of SSTAs (Significant Sequences of TIR Anomalies) to activate Natural Time Analysis: a long term study on earthquakes (M>4) occurred in Greece during 2004-2013

NASA Astrophysics Data System (ADS)

Lisi, Mariano; Tramutoli, Valerio; Eleftheriou, Alexander; Filizzola, Carolina; Genzano, Nicola; Lacava, Teodosio; Paciello, Rossana; Pergola, Nicola; Vallianatos, Filippos

2017-04-01

Real-time integration of independent observations is expected to significantly improve our present capability of dynamically assess Seismic Hazard. Specific observations (e.g. anomaly in one parameter) can be used as a trigger (and/or to establish space/time constraints) for activating (implementing) the analysis on other independent parameters (e.g. b-value computation, Natural Time Analysis, on seismic data) whose systematic computation could result otherwise very computationally expensive or operationally impossible. In the present paper one of these parameters (the Earth's emitted radiation in the Thermal Infra-Red spectral region) has been used to activate the application of Natural Time Analysis of seismic data in order to verify possible improvements in the forecast of earthquakes (with M≥4) occurred in Greece during 2004-2013. The RST (Robust Satellite Technique) data analysis approach and RETIRA (Robust Estimator of TIR Anomalies) index were used to preliminarily define, and then to identify, Significant Sequences of TIR Anomalies (SSTAs) in 10 years (2004-2013) of daily TIR images acquired by the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on board the Meteosat Second Generation (MSG) satellite. A previous paper showed that in the same period of time more than 93% of all identified SSTAs occurred in a pre-fixed space-time window around earthquakes time (30 days before up to 15 after) and epicenter (within 150 km or Dorbrovolsky distance) with a false positive rate smaller than 7%. In this paper a circular area around the barycenter of the observed Thermal Anomalies (and not just the convolution of them) has been used to define the area from which to collect seismic data required for Natural Time Analysis. Fifteen days prior the date of the first observed Significant Thermal Anomaly (STA) was the starting time used for collecting earthquakes from the catalog. The changes in the quality of earthquake forecast that were achieved by using each individual parameter in different configurations as well as the improvement emerging by their joint use of them will be presented referring to the 10 years studied period and to several recent events occurred in Greece.

Uncooled emissive infrared imagers for CubeSats

NASA Astrophysics Data System (ADS)

Puschell, Jeffery J.; Masini, Paolo

2014-09-01

Raytheon's fourth generation uncooled microbolometer array technology with digital output, High Definition (HD) 1920 × 1200 format and 12 μm cell size enables uncooled thermal infrared (TIR) multispectral imagers with the sensitivity and spatial sampling needed for a variety of Earth observation missions in LEO, GEO and HEO. A powerful combination of small detector cell size, fast optics and high sensitivity achieved without cryogenic cooling leads to instruments that are much smaller than current TIR systems, while still offering the capability to meet challenging measurement requirements for Earth observation missions. To consider how this technology could be implemented for Earth observation missions, we extend our previous studies with visible wavelength CubeSat imagers for environmental observations from LEO and examine whether small thermal infrared imagers based on fourth generation uncooled technology could be made small enough to fit onboard a 3U CubeSat and still meet challenging requirements for legacy missions. We found that moderate spatial resolution (~200 m) high sensitivity cloud and surface temperature observations meeting legacy MODIS/VIIRS requirements could be collected successfully with CubeSat-sized imagers but that multiple imagers are needed to cover the full swath for these missions. Higher spatial resolution land imagers are more challenging to fit into the CubeSat form factor, but it may be possible to do so for systems that require roughly 100 m spatial resolution. Regardless of whether it can fit into a CubeSat or not, uncooled land imagers meeting candidate TIR requirements can be implemented with a much smaller instrument than previous imagers. Even though this technology appears to be very promising, more work is needed to qualify this newly available uncooled infrared technology for use in space. If these new devices prove to be as space worthy as the first generation arrays that Raytheon qualified and built into the THEMIS imager still operating successfully onboard Mars Odyssey 2001, new classes of low cost, uncooled TIR Earth instruments will be enabled that are suitable for use as primary and hosted payloads in LEO, GEO and HEO or in constellations of small satellites as small as CubeSats to support Earth science measurement objectives in weather forecasting, land imaging and climate variability and change.

Synergistic Use of Thermal Infrared Field and Satellite Data: Eruption Detection, Monitoring and Science

NASA Astrophysics Data System (ADS)

Ramsey, Michael

2015-04-01

The ASTER-based observational success of active volcanic processes early in the Terra mission later gave rise to a funded NASA program designed to both increase the number of ASTER scenes following an eruption and perform the ground-based science needed to validate that data. The urgent request protocol (URP) system for ASTER grew out of this initial study and has now operated in conjunction with and the support of the Alaska Volcano Observatory, the University of Alaska Fairbanks, the University of Hawaii, the USGS Land Processes DAAC, and the ASTER science team. The University of Pittsburgh oversees this rapid response/sensor-web system, which until 2011 had focused solely on the active volcanoes in the North Pacific region. Since that time, it has been expanded to operate globally with AVHRR and MODIS and now ASTER visible and thermal infrared (TIR) data are being acquired at numerous active volcanoes around the world. This program relies on the increased temporal resolution of AVHRR/MODIS midwave infrared data to trigger the next available ASTER observation, which results in ASTER data as frequently as every 2-5 days. For many new targets such as Mt. Etna, the URP has increased the observational frequency by as much 50%. Examples of these datasets will be presented, which have been used for operational response to new eruptions as well as longer-term scientific studies. These studies include emplacement of new lava flows, detection of endogenous dome growth, and interpretation of hazardous dome collapse events. As a means to validate the ASTER TIR data and capture higher-resolution images, a new ground-based sensor has recently been developed that consists of standard FLIR camera modified with wavelength filters similar to the ASTER bands. Data from this instrument have been acquired of the lava lake at Kilauea and reveal differences in emissivity between molten and cooled surfaces confirming prior laboratory results and providing important constraints on lava flow propagation models. In summary, this operational/scientific program utilizing the unique properties of TIR data from ASTER has shown the potential for providing innovative and integrated synoptic measurements of volcanic science, eruptions and eruption-related hazards globally. Now, this long-term archive of volcanic image data is being mined to provide statistics on the expectations of future high-repeat TIR data such as proposed for the NASA HyspIRI mission.

An Arduino-Based Experiment Designed to Clarify the Transition to Total Internal Reflection

ERIC Educational Resources Information Center

Atkin, Keith

2018-01-01

The topic of refraction and reflection of light at the boundary of transparent media is a fundamentally important one. The special case of total internal reflection is however commonly misrepresented in elementary textbooks. This paper addresses the problem and describes an experimental procedure for measuring and displaying reflected and…

Studies of the Reflection, Refraction and Internal Reflection of Light

ERIC Educational Resources Information Center

Lanchester, P. C.

2014-01-01

An inexpensive apparatus and associated experiments are described for studying the basic laws of reflection and refraction of light at an air-glass interface, and multiple internal reflections within a glass block. In order to motivate students and encourage their active participation, a novel technique is described for determining the refractive…

Spatial Relationships Between Snow Contaminant Content, Grain Size, and Surface Temperature in Multi-spectral Remote Sensing Data of Mt. Rainier, WA

NASA Astrophysics Data System (ADS)

Kay, J. E.; Hansen, G.; Gillespie, A.; Pettit, E.

2002-12-01

Relating cryosphere change to climate change requires estimation of radiative fluxes on snow-covered surfaces. The distribution of, and relationship between, snow-pack properties that affect radiative balance can be estimated with high-resolution remote-sensing data. MODIS/ASTER airborne simulator (MASTER) data were collected at Mt. Rainier to reveal spatial patterns of, and correlations between, snow contaminant content, grain size, and temperature. The visible and near-infrared (VNIR: 11 bands, 0.4-1.0 μm) and the short-wave infrared (SWIR: 14 bands, 1.6-2.4 μm) data are processed to bi-directional reflectance (BDR) and albedo, by removing atmospheric effects and by normalizing to Solar irradiance and incidence angle. VNIR BDR and albedo are used as a proxy for snow contaminant content. Physical and optical grain size are estimated by comparing SWIR BDR and albedo to modeled and measured spectra, and ground-truth measurements. The thermal infrared data (TIR: 10 bands, 8-13 μm) are processed to temperature by removing emissivity and atmospheric effects. In combination, the VNIR, SWIR, and TIR data reveal a distinct pattern of contaminants, grain size, and temperature related to a recent snowfall and the end-of-the-summer melting season. At lower elevations, the surface accumulation of dirty lag deposits resulted in snow with very low visible albedo (20-30 %), large physical and optical grain radii (500-1500 μm, 200 μm), and temperatures near the melting point. At higher elevations, the recent snowfall left snow with low contaminant content, and a higher visible albedo (60-90 %). However, a region near the summit with smaller physical and optical grain radii (400 μm, 100 μm), and temperatures below the melting point, is distinguished from a middle elevation region with grain sizes and temperatures similar to the lower region. Contaminants reduce VNIR albedo and significantly enhance absorption of incoming solar radiation. The spatial correlation between temperature and grain size supports the idea that rapid, destructive metamorphism occurs when snow temperatures are at the melting point.

Forest canopy temperatures: dynamics, controls, and relationships with ecosystem fluxes

NASA Astrophysics Data System (ADS)

Still, C. J.; Griffith, D.; Kim, Y.; Law, B. E.; Hanson, C. V.; Kwon, H.; Schulze, M.; Detto, M.; Pau, S.

2017-12-01

Temperature strongly affects enzymatic reactions, ecosystem biogeochemistry, and species distributions. Although most focus is on air temperature, the radiative or skin temperature of plants is more relevant. Canopy skin temperature dynamics reflect biophysical, physiological, and anatomical characteristics and interactions with the environment, and can be used to examine forest responses to stresses like droughts and heat waves. Thermal infrared (TIR) imaging allows for extensive temporal and spatial sampling of canopy temperatures, particularly compared to spot measurements using thermocouples. We present results of TIR imaging of forest canopies at eddy covariance flux tower sites in the US Pacific Northwest and in Panama. These forests range from an old-growth temperate rainforest to a second growth semi-arid pine forest to a semi-deciduous tropical forest. Canopy temperature regimes at these sites are highly variable. Canopy temperatures at all forest sites displayed frequent departures from air temperature, particularly during clear sky conditions, with elevated canopy temperatures during the day and depressed canopy temperatures at night compared to air temperature. Comparison of canopy temperatures to fluxes of carbon dioxide, water vapor, and energy reveals stronger relationships than those found with air temperature. Daytime growing season net ecosystem exchange at the pine forest site is better explained by canopy temperature (r2 = 0.61) than air temperature (r2 = 0.52). At the semi-deciduous tropical forest, canopy photosynthesis is highly correlated with canopy temperature (r2 = 0.51), with a distinct optimum temperature for photosynthesis ( 31 °C) that agrees with leaf-level measurements. During the peak of one heat wave at an old-growth temperate rainforest, hourly averaged air temperature exceeded 35 °C, 10 °C above average. Peak hourly canopy temperature approached 40 °C, and leaf-to-air vapor pressure deficit exceeded 6 kPa. These extreme conditions had a dramatic effect on forest carbon and energy exchanges: the canopy switched from daytime net carbon uptake prior to the heatwave to net carbon release during and immediately after the heat wave. The latent heat flux from evapotranspiration increased during the heat wave, while sensible heat fluxes were lower.

Satellite and airborne oil spill remote sensing: State of the art and application to the BP DeepWater Horizon oil spill

USGS Publications Warehouse

Leifer, I.; Clark, R.; Jones, C.; Holt, B.; Svejkovsky, J.; Swayze, G.

2011-01-01

The vast, persistent, and unconstrained oil release from the DeepWater Horizon (DWH) challenged the spill response, which required accurate quantitative oil assessment at synoptic and operational scales. Experienced observers are the mainstay of oil spill response. Key limitations are weather, scene illumination geometry, and few trained observers, leading to potential observer bias. Aiding the response was extensive passive and active satellite and airborne remote sensing, including intelligent system augmentation, reviewed herein. Oil slick appearance strongly depends on many factors like emulsion composition and scene geometry, yielding false positives and great thickness uncertainty. Oil thicknesses and the oil to water ratios for thick slicks were derived quantitatively with a new spectral library approach based on the shape and depth of spectral features related to C-H vibration bands. The approach used near infrared, imaging spectroscopy data from the AVIRIS (Airborne Visual/InfraRed Imaging Spectrometer) instrument on the NASA ER-2 stratospheric airplane. Extrapolation to the total slick used MODIS satellite visual-spectrum broadband data, which observes sunglint reflection from surface slicks; i.e., indicates the presence of oil and/or surfactant slicks. Oil slick emissivity is less than seawater's allowing MODIS thermal infrared (TIR) nighttime identification; however, water temperature variations can cause false positives. Some strong emissivity features near 6.7 and 9.7 ??m could be analyzed as for the AVIRIS short wave infrared features, but require high spectral resolution data. TIR spectral trends can allow fresh/weathered oil discrimination. Satellite Synthetic Aperture Radar (SSAR) provided synoptic data under all-sky conditions by observing oil dampening of capillary waves; however, SSAR typically cannot discriminate thick from thin oil slicks. Airborne UAVSAR's significantly greater signal-to-noise ratio and fine spatial resolution allowed successful mapping of oil slick thickness-related patterns. Laser induced fluorescence (LIF) can quantify oil thicknesses by Raman scattering line distortions, but saturates for >20-??m thick oil and depends on oil optical characteristics and sea state. Combined with laser bathymetry LIF can provide submerged oil remote sensing.

Towards a Near Real-Time Satellite-Based Flux Monitoring System for the MENA Region

NASA Astrophysics Data System (ADS)

Ershadi, A.; Houborg, R.; McCabe, M. F.; Anderson, M. C.; Hain, C.

2013-12-01

Satellite remote sensing has the potential to offer spatially and temporally distributed information on land surface characteristics, which may be used as inputs and constraints for estimating land surface fluxes of carbon, water and energy. Enhanced satellite-based monitoring systems for aiding local water resource assessments and agricultural management activities are particularly needed for the Middle East and North Africa (MENA) region. The MENA region is an area characterized by limited fresh water resources, an often inefficient use of these, and relatively poor in-situ monitoring as a result of sparse meteorological observations. To address these issues, an integrated modeling approach for near real-time monitoring of land surface states and fluxes at fine spatio-temporal scales over the MENA region is presented. This approach is based on synergistic application of multiple sensors and wavebands in the visible to shortwave infrared and thermal infrared (TIR) domain. The multi-scale flux mapping and monitoring system uses the Atmosphere-Land Exchange Inverse (ALEXI) model and associated flux disaggregation scheme (DisALEXI), and the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) in conjunction with model reanalysis data and multi-sensor remotely sensed data from polar orbiting (e.g. Landsat and MODerate resolution Imaging Spectroradiometer (MODIS)) and geostationary (MSG; Meteosat Second Generation) satellite platforms to facilitate time-continuous (i.e. daily) estimates of field-scale water, energy and carbon fluxes. Within this modeling system, TIR satellite data provide information about the sub-surface moisture status and plant stress, obviating the need for precipitation input and a detailed soil surface characterization (i.e. for prognostic modeling of soil transport processes). The STARFM fusion methodology blends aspects of high frequency (spatially coarse) and spatially fine resolution sensors and is applied directly to flux output fields to facilitate daily mapping of fluxes at sub-field scales. A complete processing infrastructure to automatically ingest and pre-process all required input data and to execute the integrated modeling system for near real-time agricultural monitoring purposes over targeted MENA sites is being developed, and initial results from this concerted effort will be discussed.

Thermal Infrared Spectra of a Suite of Forsterite Samples and Ab-initio Modelling of theirs Spectra

NASA Astrophysics Data System (ADS)

Maturilli, A.; Stangarone, C.; Helbert, J.; Tribaudino, M.; Prencipe, M.

2017-12-01

Forsterite is the dominating component in olivine, a major constituent in ultrafemic rocks, as well as planetary bodies. Messenger X-ray spectrometer has shown that Mg-rich silicate minerals, such as enstatite and forsterite, dominate Mercury's surface (Weider et al 2012). A careful and detailed acquaintance with the forsterite spectral features and their dependence wrt environmental conditions on Mercury is needed to interpret the remote sensing data from previous and forthcoming missions. We propose an experimental vs calculation approach to reproduce and describe the spectral features of forsterite. TIR emissivity measurements are performed by the Planetary Spectroscopy Laboratory (PSL) of DLR. PSL offers the unique capability to measure the emissivity of samples at temperature up to 1000K under vacuum conditions. TIR emissivity and reflectance measurements are performed on 11 olivine samples having a different composition within the forsterite-fayalite series. When available, the sample has been measured in 2 different grain sizes (<25µm and 125-250µm ranges). Emissivity measurements are taken for temperatures from 300K to 900K step 100K in the 1-100µm spectral range. Modelling is based on ab initio calculation techniques, which allow reproducing properties of crystals, at any P/T condition, with the least possible amount of a priori empirical information. Spectra are calculated evaluating vibrational frequencies at different volume cell, here 0K, 300K and 1000K (extreme situations), taking into account zero point effects. The aim of this work is to study experimentally the effects of temperature, composition and grain sizes on emissivity band minima shifts. The outcomes will benefit the modelling of emissivity spectra with ab initio methods, already successfully enabling to foresee the bands shift due to temperature and composition, but not taking into account band shape due to grain size variations. Considering the chameleon-like effects of Mercury surface already observed (Helbert et al. 2013), this study wants to point out the main spectral features due to the composition and temperature. Our results are used to create a theoretical background to interpret the high temperature infrared emissivity spectra from MERTIS onboard the ESA BepiColombo mission to Mercury (Helbert et al. 2010).

Photovoltaic module with light reflecting backskin

DOEpatents

Gonsiorawski, Ronald C [Danvers, MA

2007-07-03

A photovoltaic module comprises electrically interconnected and mutually spaced photovoltaic cells that are encapsulated by a light-transmitting encapsulant between a light-transparent front cover and a back cover, with the back cover sheet being an ionomer/nylon alloy embossed with V-shaped grooves running in at least two directions and coated with a light reflecting medium so as to provide light-reflecting facets that are aligned with the spaces between adjacent cells and oriented so as to reflect light falling in those spaces back toward said transparent front cover for further internal reflection onto the solar cells, whereby substantially all of the reflected light will be internally reflected from said cover sheet back to the photovoltaic cells, thereby increasing the current output of the module. The internal reflector improves power output by as much as 67%.

Meaning, Internalization, and Externalization: Toward a Fuller Understanding of the Process of Reflection and Its Role in the Construction of the Self

ERIC Educational Resources Information Center

Le Cornu, Alison

2009-01-01

The study of the process of reflection has a dignified history. However, few have linked reflection to the development of the self in such a way that the form of reflection is understood to influence the resultant type of self. This article explores the process of reflection using a framework of meaning making, internalization, and externalization…

Examination of Phyllosilicate-bearing Materials in the Vicinity of the Nili Fossae Using Thermal Infrared Data

NASA Astrophysics Data System (ADS)

McDowell, M. L.; Hamilton, V. E.

2007-07-01

We examine THEMIS and TES TIR data in areas OMEGA identified as containing phyllosilicates to better understand the spectral characteristics of phyllosilicate-bearing materials and reliable TES detection limits for modeled phyllosilicate abundances.

Phyllosilicate Detection and Uncertainty from Thermal Infrared Data in the Vicinity of the Nili Fossae

NASA Astrophysics Data System (ADS)

McDowell, M. L.; Hamilton, V. E.

2007-03-01

We examine TIR data from THEMIS and TES in areas identified by OMEGA as containing phyllosilicates. Our investigation will help to constrain phyllosilicate detection limits in TES data and likely surface abundances on Mars.

An International Experience for Social Work Students: Self-Reflection through Poetry and Journal Writing Exercises

ERIC Educational Resources Information Center

Furman, Rich; Coyne, Ann; Negi, Nalini Junko

2008-01-01

This descriptive article explores the uses of poetry and journaling exercises as means of helping students develop their self-reflective capacities within the context of international social work. First, self-reflection and its importance to social work practice and education is discussed. Second, the importance of self-reflection in international…

Characterization of a linear DNA plasmid from the filamentous fungal plant pathogen Glomerella musae [Anamorph: Colletotrichum musae (Berk. and Curt.) arx.

USGS Publications Warehouse

Freeman, S.; Redman, R.S.; Grantham, G.; Rodriguez, R.J.

1997-01-01

A 7.4-kilobase (kb) DNA plasmid was isolated from Glomerella musae isolate 927 and designated pGML1. Exonuclease treatments indicated that pGML1 was a linear plasmid with blocked 5' termini. Cell-fractionation experiments combined with sequence-specific PCR amplification revealed that pGML1 resided in mitochondria. The pGML1 plasmid hybridized to cesium chloride-fractionated nuclear DNA but not to A + T-rich mitochondrial DNA. An internal 7.0-kb section of pGML1 was cloned and did not hybridize with either nuclear or mitochondrial DNA from G. musae. Sequence analysis revealed identical terminal inverted repeats (TIR) of 520 bp at the ends of the cloned 7.0-kb section of pGML1. The occurrence of pGML1 did not correspond with the pathogenicity of G. musae on banana fruit. Four additional isolates of G. musae possessed extrachromosomal DNA fragments similar in size and sequence to pGML1.

Passive autonomous infrared sensor technology

NASA Astrophysics Data System (ADS)

Sadjadi, Firooz

1987-10-01

This study was conducted in response to the DoD's need for establishing understanding of algorithm's modules for passive infrared sensors and seekers and establishing a standardized systematic procedure for applying this understanding to DoD applications. We quantified the performances of Honeywell's Background Adaptive Convexity Operator Region Extractor (BACORE) detection and segmentation modules, as functions of a set of image metrics for both single-frame and multiframe processing. We established an understanding of the behavior of the BACORE's internal parameters. We characterized several sets of stationary and sequential imagery and extracted TIR squared, TBIR squared, ESR, and range for each target. We generated a set of performance models for multi-frame processing BACORE that could be used to predict the behavior of BACORE in image metric space. A similar study was conducted for another of Honeywell's segmentors, namely Texture Boundary Locator (TBL), and its performances were quantified. Finally, a comparison of TBL and BACORE on the same data base and same number of frames was made.

RST analysis of thermal infrared satellite data for a continuous oil spill detection and monitoring

NASA Astrophysics Data System (ADS)

Grimaldi, C. S. L.; Coviello, I.; Lacava, T.; Pergola, N.; Tramutoli, V.

2012-04-01

Oil spills is one of the main sea pollution sources causing remarkable ecological impact on maritime and coastal environments. Oil spills can derive both from natural phenomena (hurricanes, landslides, earthquakes) and "human errors" (tankers collisions, shipwrecks, platform accidents), even if the main contribution to this kind of technological hazard comes from operational discharge from tankers (i.e. oil dumped during cleaning operations) representing 45% of total hydrocarbons marine pollution. Mainly for this reason, the developing of systems able to provide a high frequent sampling and observation of sea surface is fundamental. Satellite remote sensing, thanks to global coverage and continuity of observations, might effectively contribute to mitigate oil spill environmental impact, provided that reliable and effective detection techniques are developed and that relevant information and products are timely delivered and made available. In particular, satellite remote sensing by passive optical sensors on board meteorological satellites, thanks to their high temporal resolution (from a few hours to 15 minutes, depending on the characteristics of the platform/sensor), can give a significant opportunity in this field. Unfortunately, up to now, optical satellite data found a poor application in oil spill alert system mainly for the lack of data analysis techniques suitable for an automatic oil spill detection. The few methods up to now proposed are only able to manually and interactively localize the presence of an already known oil spill, mainly for "a posteriori" mapping purpose, often requiring the intervention of an expert operator. In particular, techniques based on Thermal Infrared (TIR) records exploit oil and water different thermal inertia in order to map spill sea pollution. Oil thermal inertia, in fact, is lower than sea water one, so that oil polluted areas usually show Brightness Temperature (BT) higher than sea water in TIR images collected in daytime while the opposite is true at night-time. Oil BT behaviour in night-time acquisitions makes more difficult oil detection in TIR satellite images collected because also clouds shows at this time BT lower than sea water, producing possible false identifications. The Robust Satellite Techniques (RST) approach is a general strategy for multi-temporal satellite data analysis, applicable on whatever signal and independently from a specific satellite/sensor. This allowed us to apply it for an automatic oil spill detection and monitoring using single channel TIR diurnal data, as well as on a combination of two TIR channels (e.g. split window) to obtain a reliable oil spill detection also during night-time acquisitions. Results achieved using data acquired from both AVHRR (Advanced Very High Resolution Radiometer) and MODIS (Moderate Resolution Imaging Spectroradiometer) data, in different geographic areas and observational conditions, demonstrated the good performances of the proposed approach in the context of a h24 near real time oil spill disaster monitoring system. In this paper some of these results are shown and discussed, pointing out on the relevance that a system based on such an approach might have in reducing oil spill impact on marine ecosystem.

Investigating the Origin of Silica Occurrences on Mars through Laboratory Observations

NASA Astrophysics Data System (ADS)

Ruff, S. W.; Milliken, R. E.; Farmer, J. D.; Mills, V. W.; Robertson, K.

2012-12-01

Natural amorphous "opaline" silica is a non-crystalline, typically hydrated phase of nearly pure SiO2 that is a common product of aqueous alteration of basaltic materials [e.g., 1]. It has been identified on Mars with orbital spectral data [2] and in situ measurements from the Spirit rover [3]. On Earth, opaline silica is produced over a range of temperature, pH, and water-to-rock ratio conditions that occur in hot springs, fumaroles, volcanic exhalations, low temperature weathering, and diagenesis [e.g., 4 and references therein]. The mere identification of silica on Mars therefore does not indicate a unique geologic environment or setting. However, various attributes of a given silica occurrence can be used to narrow or perhaps uniquely define the conditions in which it formed. Field relationships, microtexture, bulk and trace element chemistry, and spectral characteristics provide clues to the geologic environment in which the silica formed. Here we focus on the opaline silica in outcrops and soil at the Home Plate feature in Gusev crater where there is good evidence for past hydrothermal processes [3]. Unresolved is whether fumaroles, hot springs, geysers, or some combination of these features were present and responsible for the emplacement of opaline silica there. Knowing the answer has implications for understanding ancient climate and habitability of Mars. We have begun an investigation involving a range of laboratory measurements on natural silica-rich samples collected from various settings in Yellowstone and Hawaii Volcanoes National Parks. Visible and near infrared (VNIR) and thermal infrared (TIR) spectral measurements are supplemented with X-ray powder diffraction, scanning electron microscopy, petrographic microscopy, and ultimately with bulk and trace element measurements. Among our emerging results: 1) both VNIR and TIR spectra can detect the presence of <2 μm silica coatings on altered basalts; 2) VNIR spectra of silica from different environments exhibit only subtle differences, likely controlled primarily by variations in water content; and 3) fumarolic silica appears to have TIR spectral characteristics distinct from hot spring silica. This last result applies to samples of basaltic rocks enriched in silica by acid-sulfate leaching from Sulfur Banks, HI, which has been suggested as an analog for the Home Plate silica [3]. TIR spectra of four samples display only a weak feature near 8 μm related to high emission angle compared to that observed in hot spring silica sinter from Yellowstone. This spectral behavior may arise from microtextural or contaminant differences between the two kinds of silica. TIR spectra of Home Plate silica display a strong 8-μm feature like those of hot spring silica. If this preliminary result survives subsequent scrutiny, it may provide additional insight into the nature of the Home Plate hydrothermal system, the first to be investigated in situ on Mars. [1] McLennan, S. M. (2003), Geology, 31, 4, 315-318, [2] Milliken, R. E., et al. (2008), Geology, 36, 11, 847-850, 10.1130/G24967A.1. [3] Squyres, S. W., et al. (2008), Science, 320, 1063-1067, [4] Ruff, S. W., et al. (2011), J. Geophys. Res., 116, E00F23, 10.1029/2010JE003767.

Spatiotemporal Built-up Land Density Mapping Using Various Spectral Indices in Landsat-7 ETM+ and Landsat-8 OLI/TIRS (Case Study: Surakarta City)

NASA Astrophysics Data System (ADS)

Risky, Yanuar S.; Aulia, Yogi H.; Widayani, Prima

2017-12-01

Spectral indices variations support for rapid and accurate extracting information such as built-up density. However, the exact determination of spectral waves for built-up density extraction is lacking. This study explains and compares the capabilities of 5 variations of spectral indices in spatiotemporal built-up density mapping using Landsat-7 ETM+ and Landsat-8 OLI/TIRS in Surakarta City on 2002 and 2015. The spectral indices variations used are 3 mid-infrared (MIR) based indices such as the Normalized Difference Built-up Index (NDBI), Urban Index (UI) and Built-up and 2 visible based indices such as VrNIR-BI (visible red) and VgNIR-BI (visible green). Linear regression statistics between ground value samples from Google Earth image in 2002 and 2015 and spectral indices for determining built-up land density. Ground value used amounted to 27 samples for model and 7 samples for accuracy test. The classification of built-up density mapping is divided into 9 classes: unclassified, 0-12.5%, 12.5-25%, 25-37.5%, 37.5-50%, 50-62.5%, 62.5-75%, 75-87.5% and 87.5-100 %. Accuracy of built-up land density mapping in 2002 and 2015 using VrNIR-BI (81,823% and 73.235%), VgNIR-BI (78.934% and 69.028%), NDBI (34.870% and 74.365%), UI (43.273% and 64.398%) and Built-up (59.755% and 72.664%). Based all spectral indices, Surakarta City on 2000-2015 has increased of built-up land density. VgNIR-BI has better capabilities for built-up land density mapping on Landsat-7 ETM + and Landsat-8 OLI/TIRS.

Morphological, structural, and spectral characteristics of amorphous iron sulfates

PubMed Central

Sklute, E. C.; Jensen, H. B.; Rogers, A. D.; Reeder, R. J.

2018-01-01

Current or past brine hydrologic activity on Mars may provide suitable conditions for the formation of amorphous ferric sulfates. Once formed, these phases would likely be stable under current Martian conditions, particularly at low- to mid-latitudes. Therefore, we consider amorphous iron sulfates (AIS) as possible components of Martian surface materials. Laboratory AIS were created through multiple synthesis routes and characterized with total X-ray scattering, thermogravimetric analysis, scanning electron microscopy, visible/near-infrared (VNIR), thermal infrared (TIR), and Mössbauer techniques. We synthesized amorphous ferric sulfates (Fe(III)2(SO4)3 · ~ 6–8H2O) from sulfate-saturated fluids via vacuum dehydration or exposure to low relative humidity (<11%). Amorphous ferrous sulfate (Fe(II)SO4 · ~1H2O) was synthesized via vacuum dehydration of melanterite. All AIS lack structural order beyond 11 Å. The short-range (<5 Å) structural characteristics of amorphous ferric sulfates resemble all crystalline reference compounds; structural characteristics for the amorphous ferrous sulfate are similar to but distinct from both rozenite and szomolnokite. VNIR and TIR spectral data for all AIS display broad, muted features consistent with structural disorder and are spectrally distinct from all crystalline sulfates considered for comparison. Mössbauer spectra are also distinct from crystalline phase spectra available for comparison. AIS should be distinguishable from crystalline sulfates based on the position of their Fe-related absorptions in the visible range and their spectral characteristics in the TIR. In the NIR, bands associated with hydration at ~1.4 and 1.9 μm are significantly broadened, which greatly reduces their detectability in soil mixtures. AIS may contribute to the amorphous fraction of soils measured by the Curiosity rover. PMID:29675340

Trend of change in retentive force for bar attachments with different materials.

PubMed

Saito, Marie; Kanazawa, Manabu; Takahashi, Hidekazu; Uo, Motohiro; Minakuchi, Shunsuke

2014-12-01

Attachment wear can decrease the retentive force of 2-implant overdentures (2-IODs). The purpose of this in vitro study was to investigate the trend of change in retentive force for 6 different bar attachments during dislodgement. Round and Dolder bars were made of platinum-added gold alloy (PGA), cobalt chromium alloy (Co-Cr), and commercially pure titanium grade IV (Ti). Clips were made of PGA. Retentive force was measured during 7200 dislodging cycles. Simple linear regression analysis was performed in order to investigate the relationship between number of cycles and retentive force (P<.05). Subsequently, wear debris was analyzed, and the surface of the attachments was observed. The retentive force of the Co-Cr round bar attachment (CoCr-R) increased from 57.5 N to 68.3 N and the Ti round bar attachment (Ti-R) from 54.8 N to 59.7 N. However, the retentive force of the PGA round bar attachment (PGA-R) decreased from 69.3 N to 64.0 N. A positive relationship was found between the number of cycles and the retentive force of both CoCr-R and Ti-R. The composition of the wear debris was almost the same as for PGA. For the Dolder bar attachment, no changes were seen in retentive force (between 7.0 N to 12.0 N). For the round bar attachment, the PGA clip and PGA bar showed wear. The retentive force of PGA-R slightly decreased. The retentive force of CoCr-R and Ti-R tended to increase. For the Dolder bar attachment, all 3 types of bar attachment showed no wear. Copyright © 2014 Editorial Council for the Journal of Prosthetic Dentistry. Published by Elsevier Inc. All rights reserved.

Ultrasound surveillance for radiation-induced thyroid carcinoma in adult survivors of childhood cancer.

PubMed

Brignardello, Enrico; Felicetti, Francesco; Castiglione, Anna; Gallo, Marco; Maletta, Francesca; Isolato, Giuseppe; Biasin, Eleonora; Fagioli, Franca; Corrias, Andrea; Palestini, Nicola

2016-03-01

The optimal surveillance strategy to screen for thyroid carcinoma childhood cancer survivors (CCS) at increased risk is still debated. In our clinical practice, beside neck palpation we routinely perform thyroid ultrasound (US). Here we describe the results obtained using this approach. We considered all CCS referred to our long term clinic from November 2001 to September 2014. One hundred and ninety-seven patients who had received radiation therapy involving the thyroid gland underwent US surveillance. Thyroid US started 5 years after radiotherapy and repeated every 3 years, if negative. Among 197 CCS previously irradiated to the thyroid gland, 74 patients (37.5%) developed thyroid nodules, and fine-needle aspiration was performed in 35. In 11 patients the cytological examination was suspicious or diagnostic for malignancy (TIR 4/5), whereas a follicular lesion was diagnosed in nine. Patients with TIR 4/5 cytology were operated and in all cases thyroid cancer diagnosis was confirmed. The nine patients with TIR 3 cytology also underwent surgery and a carcinoma was diagnosed in three of them. Prevalence of thyroid cancer was 7.1%. Tumour size ranged between 4 and 25 mm, but six (43%) were classified T3 because of extra-thyroidal extension. Six patients had nodal metastases; in eight patients the tumour was multifocal. At the time of the study all patients are disease free, without evidence of surgery complications. Applying our US surveillance protocol, the prevalence of radiation-induced thyroid cancer is high. Histological features of the thyroid cancers diagnosed in our cohort suggest that most of them were clinically relevant tumours. Copyright © 2015 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kapala, M. J.; Sandstrom, K.; Groves, B.

The [C II] 158 μm line is one of the strongest emission lines observed in star-forming galaxies and has been empirically measured to correlate with the star-formation rate (SFR) globally and on kiloparsec scales. However, because of the multiphase origins of [C II], one might expect this relation to break down at small scales. We investigate the origins of [C II] emission by examining high spatial resolution observations of [C II] in M31 with the Survey of Lines in M31. We present five ∼700 × 700 pc (3' × 3') fields mapping the [C II] emission, Hα emission, and themore » ancillary infrared (IR) data. We spatially separate star-forming regions from diffuse gas and dust emission on ∼50 pc scales. We find that the [C II]-SFR correlation holds even at these scales, although the relation typically has a flatter slope than found at larger (kiloparsec) scales. While the Hα emission in M31 is concentrated in the SFR regions, we find that a significant amount (∼20%-90%) of the [C II] emission comes from outside star-forming regions and that the total IR emission (TIR) has the highest diffuse fraction of all SFR tracers. We find a weak correlation of the [C II]/TIR to dust color in each field and find a large-scale trend of increasing [C II]/TIR with galactocentric radius. The differences in the relative diffuse fractions of [C II], Hα, and IR tracers are likely caused by a combination of energetic photon leakage from H II regions and heating by the diffuse radiation field arising from older (B-star) stellar populations. However, we find that by averaging our measurements over kiloparsec scales, these effects are minimized, and the relation between [C II] and SFR found in other nearby galaxy studies is retrieved.« less

Advanced nursing interventions and length of stay in the emergency department.

PubMed

Stauber, Mary A

2013-05-01

Over the past 15 years, emergency departments have become overcrowded, with prolonged wait times and an extended length of stay (LOS). These factors cause delay in treatment, which reduces quality of care and increases the potential for adverse events. One suggestion to decrease LOS in the emergency department is to implement advanced nursing interventions (ANIs) at triage. The study purpose was to determine whether there was a difference in ED LOS between patients presenting with a chief complaint of abdominal pain who received ANIs at triage and patients who did not receive ANIs at triage. A retrospective chart review was performed to determine the ED LOS (mean time in department and mean time in room [TIR]). The convenience sample included ED patients who presented to a large Midwestern academic medical center's emergency department with a chief complaint of abdominal pain and Emergency Severity Index level 3. Independent-samples t tests were used to determine whether there was any statistical difference in LOS between the two groups. Cohen's d statistic was used to determine effect size. Implementation of ANIs at triage for patients with low-acuity abdominal pain resulted in an increased time in department and a decreased TIR with a medium effect size. A reduction in TIR optimizes bed availability in the emergency department. Low-acuity patients spend less time occupying an ED bed, which preserves limited bed space for the sickest patients. Results of diagnostic tests are often available by the time the patient is placed in a room, facilitating early medical decision making and decreasing treatment time. Copyright © 2013 Emergency Nurses Association. Published by Mosby, Inc. All rights reserved.

The RNA Binding Protein CsrA Is a Pleiotropic Regulator of the Locus of Enterocyte Effacement Pathogenicity Island of Enteropathogenic Escherichia coli▿

PubMed Central

Bhatt, Shantanu; Edwards, Adrianne Nehrling; Nguyen, Hang Thi Thu; Merlin, Didier; Romeo, Tony; Kalman, Daniel

2009-01-01

The attaching and effacing (A/E) pathogen enteropathogenic Escherichia coli (EPEC) forms characteristic actin-filled membranous protrusions upon infection of host cells termed pedestals. Here we examine the role of the RNA binding protein CsrA in the expression of virulence genes and proteins that are necessary for pedestal formation. The csrA mutant was defective in forming actin pedestals on epithelial cells and in disrupting transepithelial resistance across polarized epithelial cells. Consistent with reduced pedestal formation, secretion of the translocators EspA, EspB, and EspD and the effector Tir was substantially reduced in the csrA mutant. Purified CsrA specifically bound to the sepL espADB mRNA leader, and the corresponding transcript levels were reduced in the csrA mutant. In contrast, Tir synthesis was unaffected in the csrA mutant. Reduced secretion of Tir appeared to be in part due to decreased synthesis of EscD, an inner membrane architectural protein of the type III secretion system (TTSS) and EscF, a protein that forms the protruding needle complex of the TTSS. These effects were not mediated through the locus of enterocyte effacement (LEE) transcriptional regulator GrlA or Ler. In contrast to the csrA mutant, multicopy expression of csrA repressed transcription from LEE1, grlRA, LEE2, LEE5, escD, and LEE4, an effect mediated by GrlA and Ler. Consistent with its role in other organisms, CsrA also regulated flagellar motility and glycogen levels. Our findings suggest that CsrA governs virulence factor expression in an A/E pathogen by regulating mRNAs encoding translocators, effectors, or transcription factors. PMID:19581394

The next Landsat satellite; the Landsat Data Continuity Mission

USGS Publications Warehouse

Irons, James R.; Dwyer, John L.; Barsi, Julia A.

2012-01-01

The National Aeronautics and Space Administration (NASA) and the Department of Interior United States Geological Survey (USGS) are developing the successor mission to Landsat 7 that is currently known as the Landsat Data Continuity Mission (LDCM). NASA is responsible for building and launching the LDCM satellite observatory. USGS is building the ground system and will assume responsibility for satellite operations and for collecting, archiving, and distributing data following launch. The observatory will consist of a spacecraft in low-Earth orbit with a two-sensor payload. One sensor, the Operational Land Imager (OLI), will collect image data for nine shortwave spectral bands over a 185 km swath with a 30 m spatial resolution for all bands except a 15 m panchromatic band. The other instrument, the Thermal Infrared Sensor (TIRS), will collect image data for two thermal bands with a 100 m resolution over a 185 km swath. Both sensors offer technical advancements over earlier Landsat instruments. OLI and TIRS will coincidently collect data and the observatory will transmit the data to the ground system where it will be archived, processed to Level 1 data products containing well calibrated and co-registered OLI and TIRS data, and made available for free distribution to the general public. The LDCM development is on schedule for a December 2012 launch. The USGS intends to rename the satellite "Landsat 8" following launch. By either name a successful mission will fulfill a mandate for Landsat data continuity. The mission will extend the almost 40-year Landsat data archive with images sufficiently consistent with data from the earlier missions to allow long-term studies of regional and global land cover change.

Natural Variation in Small Molecule–Induced TIR-NB-LRR Signaling Induces Root Growth Arrest via EDS1- and PAD4-Complexed R Protein VICTR in Arabidopsis[C][W

PubMed Central

Kim, Tae-Houn; Kunz, Hans-Henning; Bhattacharjee, Saikat; Hauser, Felix; Park, Jiyoung; Engineer, Cawas; Liu, Amy; Ha, Tracy; Parker, Jane E.; Gassmann, Walter; Schroeder, Julian I.

2012-01-01

In a chemical genetics screen we identified the small-molecule [5-(3,4-dichlorophenyl)furan-2-yl]-piperidine-1-ylmethanethione (DFPM) that triggers rapid inhibition of early abscisic acid signal transduction via PHYTOALEXIN DEFICIENT4 (PAD4)- and ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1)-dependent immune signaling mechanisms. However, mechanisms upstream of EDS1 and PAD4 in DFPM-mediated signaling remain unknown. Here, we report that DFPM generates an Arabidopsis thaliana accession-specific root growth arrest in Columbia-0 (Col-0) plants. The genetic locus responsible for this natural variant, VICTR (VARIATION IN COMPOUND TRIGGERED ROOT growth response), encodes a TIR-NB-LRR (for Toll-Interleukin1 Receptor–nucleotide binding–Leucine-rich repeat) protein. Analyses of T-DNA insertion victr alleles showed that VICTR is necessary for DFPM-induced root growth arrest and inhibition of abscisic acid–induced stomatal closing. Transgenic expression of the Col-0 VICTR allele in DFPM-insensitive Arabidopsis accessions recapitulated the DFPM-induced root growth arrest. EDS1 and PAD4, both central regulators of basal resistance and effector-triggered immunity, as well as HSP90 chaperones and their cochaperones RAR1 and SGT1B, are required for the DFPM-induced root growth arrest. Salicylic acid and jasmonic acid signaling pathway components are dispensable. We further demonstrate that VICTR associates with EDS1 and PAD4 in a nuclear protein complex. These findings show a previously unexplored association between a TIR-NB-LRR protein and PAD4 and identify functions of plant immune signaling components in the regulation of root meristematic zone-targeted growth arrest. PMID:23275581

Comparative analysis of the complete genome sequence of the California MSW strain of myxoma virus reveals potential host adaptations.

PubMed

Kerr, Peter J; Rogers, Matthew B; Fitch, Adam; Depasse, Jay V; Cattadori, Isabella M; Hudson, Peter J; Tscharke, David C; Holmes, Edward C; Ghedin, Elodie

2013-11-01

Myxomatosis is a rapidly lethal disease of European rabbits that is caused by myxoma virus (MYXV). The introduction of a South American strain of MYXV into the European rabbit population of Australia is the classic case of host-pathogen coevolution following cross-species transmission. The most virulent strains of MYXV for European rabbits are the Californian viruses, found in the Pacific states of the United States and the Baja Peninsula, Mexico. The natural host of Californian MYXV is the brush rabbit, Sylvilagus bachmani. We determined the complete sequence of the MSW strain of Californian MYXV and performed a comparative analysis with other MYXV genomes. The MSW genome is larger than that of the South American Lausanne (type) strain of MYXV due to an expansion of the terminal inverted repeats (TIRs) of the genome, with duplication of the M156R, M154L, M153R, M152R, and M151R genes and part of the M150R gene from the right-hand (RH) end of the genome at the left-hand (LH) TIR. Despite the extreme virulence of MSW, no novel genes were identified; five genes were disrupted by multiple indels or mutations to the ATG start codon, including two genes, M008.1L/R and M152R, with major virulence functions in European rabbits, and a sixth gene, M000.5L/R, was absent. The loss of these gene functions suggests that S. bachmani is a relatively recent host for MYXV and that duplication of virulence genes in the TIRs, gene loss, or sequence variation in other genes can compensate for the loss of M008.1L/R and M152R in infections of European rabbits.

Selection of Single Domain Antibodies from Immune Libraries Displayed on the Surface of E. coli Cells with Two β-Domains of Opposite Topologies

PubMed Central

Martínez-Arteaga, Rocio; Ruano-Gallego, David; Fraile, Sofía; Margolles, Yago; Teira, Xema; Gutierrez, Carlos; Bodelón, Gustavo; Fernández, Luis Ángel

2013-01-01

Screening of antibody (Ab) libraries by direct display on the surface of E. coli cells is hampered by the presence of the outer membrane (OM). In this work we demonstrate that the native β-domains of EhaA autotransporter and intimin, two proteins from enterohemorrhagic E. coli O157:H7 (EHEC) with opposite topologies in the OM, are effective systems for the display of immune libraries of single domain Abs (sdAbs) from camelids (nanobodies or VHH) on the surface of E. coli K-12 cells and for the selection of high affinity sdAbs using magnetic cell sorting (MACS). We analyzed the capacity of EhaA and intimin β-domains to display individual sdAbs and sdAb libraries obtained after immunization with the extracellular domain of the translocated intimin receptor from EHEC (TirMEHEC). We demonstrated that both systems displayed functional sdAbs on the surface of E. coli cells with little proteolysis and cellular toxicity, although E. coli cells displaying sdAbs with the β-domain of intimin showed higher antigen-binding capacity. Both E. coli display libraries were screened for TirMEHEC binding clones by MACS. High affinity binders were selected by both display systems, although more efficiently with the intimin β-domain. The specificity of the selected clones against TirMEHEC was demonstrated by flow cytometry of E. coli cells, along with ELISA and surface plasmon resonance with purified sdAbs. Finally, we employed the E. coli cell display systems to provide an estimation of the affinity of the selected sdAb by flow cytometry analysis under equilibrium conditions. PMID:24086454

SFR bulge-to-disk ratios from the CALIFA IFS nearby galaxies survey

NASA Astrophysics Data System (ADS)

Catalán-Torrecilla, Cristina; Gil de Paz, Armando; Castillo-Morales, Africa; Iglesias Páramo, Jorge; Sanchez, Sebastian

2015-08-01

Our ultimate aim is to study the evolution of the Star Formation Rate (SFR) by components (nuclei, bulges, disks) as a key constraint for the models of galaxy formation and evolution. In order to provide a local benchmark, we start from the analysis of a sample of nearby galaxies from the CALIFA Integral Field Spectroscopy (IFS) survey. Prior to this study, we have verified that the extinction-corrected Halpha luminosity provided by CALIFA IFS data recovers the total SFR by means of comparing measurements from this estimator with single-band (22μm, TIR and FUV) and hybrid tracers (FUV+22μm, FUV+TIR, Halpha+22μm, Halpha+TIR) for our sample of 272 CALIFA galaxies (Catalán-Torrecilla et al. 2015). We focus here on the study of the SFR bulge-to-disk ratio in nearby galaxies, something achievable in large numbers thanks to the good spatial resolution of our optical stellar-absorption and extinction corrected IFS-based Halpha maps. The results of the photometric decomposition of SDSS images of our sample is used as a prior is this analysis. The CALIFA objects analyzed range from galaxies that have all the SFR concentrated in the nuclear part to cases in which the SFR is spread over the disk and include both barred and unbarred galaxies. In summary, we are able to explore the distribution of the SFR in scales of 0.3-1.6 kpc for a rather large and well-characterized galaxy sample in the Local Universe.This and similar studies at higher redshifts will be key to understand how and at what rate galaxies assemble their stellar masses, either through mergers and/or secular processes.

Systematic Analysis and Comparison of Nucleotide-Binding Site Disease Resistance Genes in a Diploid Cotton Gossypium raimondii

PubMed Central

Wei, Hengling; Li, Wei; Sun, Xiwei; Zhu, Shuijin; Zhu, Jun

2013-01-01

Plant disease resistance genes are a key component of defending plants from a range of pathogens. The majority of these resistance genes belong to the super-family that harbors a Nucleotide-binding site (NBS). A number of studies have focused on NBS-encoding genes in disease resistant breeding programs for diverse plants. However, little information has been reported with an emphasis on systematic analysis and comparison of NBS-encoding genes in cotton. To fill this gap of knowledge, in this study, we identified and investigated the NBS-encoding resistance genes in cotton using the whole genome sequence information of Gossypium raimondii. Totally, 355 NBS-encoding resistance genes were identified. Analyses of the conserved motifs and structural diversity showed that the most two distinct features for these genes are the high proportion of non-regular NBS genes and the high diversity of N-termini domains. Analyses of the physical locations and duplications of NBS-encoding genes showed that gene duplication of disease resistance genes could play an important role in cotton by leading to an increase in the functional diversity of the cotton NBS-encoding genes. Analyses of phylogenetic comparisons indicated that, in cotton, the NBS-encoding genes with TIR domain not only have their own evolution pattern different from those of genes without TIR domain, but also have their own species-specific pattern that differs from those of TIR genes in other plants. Analyses of the correlation between disease resistance QTL and NBS-encoding resistance genes showed that there could be more than half of the disease resistance QTL associated to the NBS-encoding genes in cotton, which agrees with previous studies establishing that more than half of plant resistance genes are NBS-encoding genes. PMID:23936305

Harnessing Multiple Internal Reflections to Design Highly Absorptive Acoustic Metasurfaces

NASA Astrophysics Data System (ADS)

Shen, Chen; Cummer, Steven A.

2018-05-01

The rapid development of metasurfaces has enabled numerous intriguing applications with acoustically thin sheets. Here we report the theory and experimental realization of a nonresonant sound-absorbing strategy using metasurfaces by harnessing multiple internal reflections. We theoretically and numerically show that the higher-order diffraction of thin gradient-index metasurfaces is tied to multiple internal reflections inside the unit cells. Highly absorbing acoustic metasurfaces can be realized by enforcing multiple internal reflections together with a small amount of loss. A reflective gradient-index acoustic metasurface is designed based on the theory, and we further experimentally verify the performance using a three-dimensional printed prototype. Measurements show over 99% energy absorption at the peak frequency and a 95% energy absorption bandwidth of around 600 Hz. The proposed mechanism provides an alternative route for sound absorption without the necessity of high absorption of the individual unit cells.

Internal high-reflectivity omni-directional reflectors

NASA Astrophysics Data System (ADS)

Xi, J.-Q.; Ojha, Manas; Plawsky, J. L.; Gill, W. N.; Kim, Jong Kyu; Schubert, E. F.

2005-07-01

An internal high-reflectivity omni-directional reflector (ODR) for the visible spectrum is realized by the combination of total internal reflection using a low-refractive-index (low-n) material and reflection from a one-dimensional photonic crystal (1D PC). The low-n layer limits the range of angles in the 1D PC to values below the Brewster angle, thereby enabling high reflectivity and omni-directionality. This ODR is demonstrated using GaP as ambient, nanoporous SiO2 with a very low refractive index (n=1.10), and a four-pair TiO2/SiO2 multilayer stack. The results indicate a two orders of magnitude lower angle-integrated transverse-electric-transverse-magnetic polarization averaged mirror loss of the ODR compared with conventional distributed Bragg reflectors and metal reflectors. This indicates the high potential of the internal ODRs for optoelectronic semiconductor devices, e.g., light-emitting diodes.

Passively Q-switched side pumped monolithic ring laser

NASA Technical Reports Server (NTRS)

Li, Steven X. (Inventor)

2012-01-01

Disclosed herein are systems and methods for generating a side-pumped passively Q-switched non-planar ring oscillator. The method introduces a laser into a cavity of a crystal, the cavity having a round-trip path formed by a reflection at a dielectrically coated front surface, a first internal reflection at a first side surface of the crystal at a non-orthogonal angle with the front, a second internal reflection at a top surface of the crystal, and a third internal reflection at a second side surface of the crystal at a non-orthogonal angle with the front. The method side pumps the laser at the top or bottom surface with a side pump diode array beam and generates an output laser emanating at a location on the front surface. The design can include additional internal reflections to increase interaction with the side pump. Waste heat may be removed by mounting the crystal to a heatsink.

Seismic reflection imaging, accounting for primary and multiple reflections

NASA Astrophysics Data System (ADS)

Wapenaar, Kees; van der Neut, Joost; Thorbecke, Jan; Broggini, Filippo; Slob, Evert; Snieder, Roel

2015-04-01

Imaging of seismic reflection data is usually based on the assumption that the seismic response consists of primary reflections only. Multiple reflections, i.e. waves that have reflected more than once, are treated as primaries and are imaged at wrong positions. There are two classes of multiple reflections, which we will call surface-related multiples and internal multiples. Surface-related multiples are those multiples that contain at least one reflection at the earth's surface, whereas internal multiples consist of waves that have reflected only at subsurface interfaces. Surface-related multiples are the strongest, but also relatively easy to deal with because the reflecting boundary (the earth's surface) is known. Internal multiples constitute a much more difficult problem for seismic imaging, because the positions and properties of the reflecting interfaces are not known. We are developing reflection imaging methodology which deals with internal multiples. Starting with the Marchenko equation for 1D inverse scattering problems, we derived 3D Marchenko-type equations, which relate reflection data at the surface to Green's functions between virtual sources anywhere in the subsurface and receivers at the surface. Based on these equations, we derived an iterative scheme by which these Green's functions can be retrieved from the reflection data at the surface. This iterative scheme requires an estimate of the direct wave of the Green's functions in a background medium. Note that this is precisely the same information that is also required by standard reflection imaging schemes. However, unlike in standard imaging, our iterative Marchenko scheme retrieves the multiple reflections of the Green's functions from the reflection data at the surface. For this, no knowledge of the positions and properties of the reflecting interfaces is required. Once the full Green's functions are retrieved, reflection imaging can be carried out by which the primaries and multiples are mapped to their correct positions, with correct reflection amplitudes. In the presentation we will illustrate this new methodology with numerical examples and discuss its potential and limitations.

An Arduino-based experiment designed to clarify the transition to total internal reflection

NASA Astrophysics Data System (ADS)

Atkin, Keith

2018-03-01

The topic of refraction and reflection of light at the boundary of transparent media is a fundamentally important one. The special case of total internal reflection is however commonly misrepresented in elementary textbooks. This paper addresses the problem and describes an experimental procedure for measuring and displaying reflected and transmitted light intensities using readily available components and the Arduino microcontroller.

New mounting improves solar-cell efficiency

NASA Technical Reports Server (NTRS)

Shepard, N. F., Jr.

1980-01-01

Method boosts output by about 20 percent by trapping and redirecting solar radiation without increasing module depth. Mounted solar-cell array is covered with internally reflecting plate. Plate is attached to each cell by transparent adhesive, and space between cells is covered with layer of diffusely reflecting material. Solar energy falling on space between cells is diffused and reflected internally by plate until it is reflected onto solar cell.

Nonimaging light concentration using total internal reflection films.

PubMed

Ouellette, G; Waltham, C E; Drees, R M; Poon, A; Schubank, R; Whitehead, L A

1992-05-01

We present a method of fabricating nonimaging light concentrators from total internal reflection film. A prototype has been made and tested and found to operate in agreement with predictions of ray-tracing codes. The performance of the prototype is comparable with that of concentrators made from specular reflecting materials.

19 CFR 115.2 - Application.

Code of Federal Regulations, 2013 CFR

2013-04-01

... is used for the first time for transport under Customs seal. The TIR Convention, 1975, generally... that country is a contracting party to the Convention, may approve a series of road vehicles or containers presented for design type approval. The procedures for applying for certification are contained in...

19 CFR 115.2 - Application.

Code of Federal Regulations, 2014 CFR

2014-04-01

... is used for the first time for transport under Customs seal. The TIR Convention, 1975, generally... that country is a contracting party to the Convention, may approve a series of road vehicles or containers presented for design type approval. The procedures for applying for certification are contained in...

19 CFR 115.2 - Application.

Code of Federal Regulations, 2010 CFR

2010-04-01

... is used for the first time for transport under Customs seal. The TIR Convention, 1975, generally... that country is a contracting party to the Convention, may approve a series of road vehicles or containers presented for design type approval. The procedures for applying for certification are contained in...

19 CFR 115.2 - Application.

Code of Federal Regulations, 2011 CFR

2011-04-01

... is used for the first time for transport under Customs seal. The TIR Convention, 1975, generally... that country is a contracting party to the Convention, may approve a series of road vehicles or containers presented for design type approval. The procedures for applying for certification are contained in...

Applications of Land Surface Temperature from Microwave Observations

USDA-ARS?s Scientific Manuscript database

Land surface temperature (LST) is a key input for physically-based retrieval algorithms of hydrological states and fluxes. Yet, it remains a poorly constrained parameter for global scale studies. The main two observational methods to remotely measure T are based on thermal infrared (TIR) observation...

Generating high temporal and spatial resolution thermal band imagery using robust sharpening approach

USDA-ARS?s Scientific Manuscript database

Thermal infrared band imagery provides key information for detecting wild fires, mapping land surface energy fluxes and evapotranspiration, monitoring urban heat fluxes and drought monitoring. Thermal infrared (TIR) imagery at fine resolution is required for field scale applications. However, therma...

Single Molecular Detection via Micro-Scale Polymeric Opto-Electro-Mechanical Systems

DTIC Science & Technology

2005-06-01

lenses, multilayer chips with micromirror sidewalls for TIR excitation and polymer-based microactuators for sample handling. 15. NUMBER OF PAGES...Axis Gimaled Micromirror ..............................................................18 3.1.1.3.2 Concept of the Backside Island...Gimbaled 2-D Micromirror .............................................................................................................65 4.2.2

A Physically-Based Drought Product Using Thermal Remote Sensing of Evapotranspiration

USDA-ARS?s Scientific Manuscript database

Thermal infrared (TIR) remote sensing of land-surface temperature (LST) provides valuable information about the sub-surface moisture status. While empirical indices measuring anomalies in LST and vegetation amount (e.g., as quantified by the Normalized Difference Vegetation Index; NDVI) have demonst...

Social vulnerability to heat in Greater Atlanta, USA: spatial pattern of heat, NDVI, socioeconomics and household composition

NASA Astrophysics Data System (ADS)

Sim, Sunhui

2017-10-01

The purpose of the article is evaluating spatial patterns of social vulnerability to heat in Greater Atlanta in 2015. The social vulnerability to heat is an index of socioeconomic status, household composition, land surface temperature and normalized differential vegetation index (NDVI). Land surface temperature and NDVI were derived from the red, NIR and thermal infrared (TIR) of a Landsat OLI/TIRS images collected on September 14, 2015. The research focus is on the variation of heat vulnerability in Greater Atlanta. The study found that heat vulnerability is highly clustered spatially, resulting in "hot spots" and "cool spots". The results show significant health disparities. The hotspots of social vulnerability to heat occurred in neighborhoods with lower socioeconomic status as measured by low education, low income and more poverty, greater proportion of elderly people and young children. The findings of this study are important for identifying clusters of heat vulnerability and the relationships with social factors. These significant results provide a basis for heat intervention services.

The SARM1 Toll/Interleukin-1 Receptor Domain Possesses Intrinsic NAD+ Cleavage Activity that Promotes Pathological Axonal Degeneration.

PubMed

Essuman, Kow; Summers, Daniel W; Sasaki, Yo; Mao, Xianrong; DiAntonio, Aaron; Milbrandt, Jeffrey

2017-03-22

Axonal degeneration is an early and prominent feature of many neurological disorders. SARM1 is the central executioner of the axonal degeneration pathway that culminates in depletion of axonal NAD + , yet the identity of the underlying NAD + -depleting enzyme(s) is unknown. Here, in a series of experiments using purified proteins from mammalian cells, bacteria, and a cell-free protein translation system, we show that the SARM1-TIR domain itself has intrinsic NADase activity-cleaving NAD + into ADP-ribose (ADPR), cyclic ADPR, and nicotinamide, with nicotinamide serving as a feedback inhibitor of the enzyme. Using traumatic and vincristine-induced injury models in neurons, we demonstrate that the NADase activity of full-length SARM1 is required in axons to promote axonal NAD + depletion and axonal degeneration after injury. Hence, the SARM1 enzyme represents a novel therapeutic target for axonopathies. Moreover, the widely utilized TIR domain is a protein motif that can possess enzymatic activity. Copyright © 2017 Elsevier Inc. All rights reserved.

Adaptive waveform optimization design for target detection in cognitive radar

NASA Astrophysics Data System (ADS)

Zhang, Xiaowen; Wang, Kaizhi; Liu, Xingzhao

2017-01-01

The problem of adaptive waveform design for target detection in cognitive radar (CR) is investigated. This problem is analyzed in signal-dependent interference, as well as additive channel noise for extended target with unknown target impulse response (TIR). In order to estimate the TIR accurately, the Kalman filter is used in target tracking. In each Kalman filtering iteration, a flexible online waveform spectrum optimization design taking both detection and range resolution into account is modeled in Fourier domain. Unlike existing CR waveform, the proposed waveform can be simultaneously updated according to the environment information fed back by receiver and radar performance demands. Moreover, the influence of waveform spectral phase to radar performance is analyzed. Simulation results demonstrate that CR with the proposed waveform performs better than a traditional radar system with a fixed waveform and offers more flexibility and suitability. In addition, waveform spectral phase will not influence tracking, detection, and range resolution performance but will greatly influence waveform forming speed and peak-to-average power ratio.

Solfatara Crater Seen Through Hyperspectral Dais Sensor Data In The Tir Region: Temperature Map and Spectral Emissivity Image For Mineralogical Species Identification.

NASA Astrophysics Data System (ADS)

Merucci, L.; Buongiorno, M. F.; Teggi, S.; Bogliolo, M. P.

Temperature map and spectral emissivity have been retrieved by means of the TIR re- gion data collected by the DAIS airborne hyperspectral sensor on the Solfatara, Campi Flegrei, Italy, during the July 27, 1997 flight. During the 7915 DAIS flight a contem- poraneous field campaign was carried out in order to measure the surface temperature in the Solfatara crater and a radiosonde has been launched to measure the local at- mospheric profile. A normalized vegetation index filter has been used to select in the Solfatara crater scene the areas not covered by vegetation upon which the temperature and emissivity retrieval algorithms have been applied. The atmospheric contribute has been estimated by means of the MODTRAN radiative transfer code. The temperature map has been finally validated with the field measurements and the spectral emissivity image has been compared with the spectra available for the mineralogical species that cover the Solfatara crater.

Tumour regression of uveal melanoma after ruthenium-106 brachytherapy or stereotactic radiotherapy with gamma knife or linear accelerator.

PubMed

Georgopoulos, Michael; Zehetmayer, Martin; Ruhswurm, Irene; Toma-Bstaendig, Sabine; Ségur-Eltz, Nikolaus; Sacu, Stefan; Menapace, Rupert

2003-01-01

This study assesses differences in relative tumour regression and internal acoustic reflectivity after 3 methods of radiotherapy for uveal melanoma: (1) brachytherapy with ruthenium-106 radioactive plaques (RU), (2) fractionated high-dose gamma knife stereotactic irradiation in 2-3 fractions (GK) or (3) fractionated linear-accelerator-based stereotactic teletherapy in 5 fractions (Linac). Ultrasound measurements of tumour thickness and internal reflectivity were performed with standardised A scan pre-operatively and 3, 6, 9, 12, 18, 24 and 36 months postoperatively. Of 211 patients included in the study, 111 had a complete 3-year follow-up (RU: 41, GK: 37, Linac: 33). Differences in tumour thickness and internal reflectivity were assessed with analysis of variance, and post hoc multiple comparisons were calculated with Tukey's honestly significant difference test. Local tumour control was excellent with all 3 methods (>93%). At 36 months, relative tumour height reduction was 69, 50 and 30% after RU, GK and Linac, respectively. In all 3 treatment groups, internal reflectivity increased from about 30% initially to 60-70% 3 years after treatment. Brachytherapy with ruthenium-106 plaques results in a faster tumour regression as compared to teletherapy with gamma knife or Linac. Internal reflectivity increases comparably in all 3 groups. Besides tumour growth arrest, increasing internal reflectivity is considered as an important factor indicating successful treatment. Copyright 2003 S. Karger AG, Basel

Character of the opposition effect and negative polarization

NASA Technical Reports Server (NTRS)

Pieters, Carle M.; Shkuratov, Yu. G.; Stankevich, D. G.

1991-01-01

Photometric and polarimetric properties at small phase angles were measured for silicates with controlled surface properties in order to distinguish properties that are associated with surface reflection from those that are associated with multiple scattering from internal grain boundaries. These data provide insight into the causes and conditions of photometric properties observed at small phase angles for dark bodies of the solar system. Obsidian was chosen to represent a silicate dielectric with no internal scattering boundaries. Because obsidian is free of internal scatterers, light reflected from both the rough and smooth obsidian samples is almost entirely single and multiple Fresnel reflections form surface facets with no body component. Surface structure alone cannot produce an opposition effect. Comparison of the obsidian and basalt results indicates that for an opposition effect to occur, surface texture must be both rough and contain internal scattering interfaces. Although the negative polarization observed for the obsidian samples indicates single and multiple reflections are part of negative polarization, the longer inversion angle of the multigrain inversion samples implies that internal reflections must also contribute a significant negative polarization component.

Germania Quo Vadis?: Dynamics of Change in German Security Policy

DTIC Science & Technology

2007-06-01

Keohane, Robert O., Michael Brecher and Frank Harveys, eds. Institutional Theory in international Relations. In: Millennial Reflections on International...Hegemony: Cooperation and Discord in the World Political Economy, (Princeton University Press, 1984), pp. 78-109; Robert O. Keohane, “ Institutional ... Theory in international Relations,” in Michael Brecher and Frank Harveys, eds., Millennial Reflections on International Studies (University of Michigan

Unlocking reflective practice for nurses: innovations in working with master of nursing students in Hong Kong.

PubMed

Joyce-McCoach, Joanne T; Parrish, Dominique R; Andersen, Patrea R; Wall, Natalie

2013-09-01

Being reflective is well established as an important conduit of practice development, a desirable tertiary graduate quality and a core competency of health professional membership. By assisting students to be more effective in their ability to reflect, they are better able to formulate strategies to manage issues experienced within a professional context, which ultimately assists them to be better service providers. However, some students are challenged by the practice of reflection and these challenges are even more notable for international students. This paper presents a teaching initiative that focused specifically on enhancing the capacity of an international cohort of nursing students, to engage in reflective practice. The initiative centered on an evaluation of a reflective practice core subject, which was taught in a Master of Nursing programme delivered in Hong Kong. A learning-centered framework was used to evaluate the subject and identify innovative strategies that would better assist international students to develop reflective practices. The outcomes of curriculum and teaching analysis and proposed changes and innovations in teaching practice to support international students are presented and discussed. Copyright © 2012 Elsevier Ltd. All rights reserved.

Using microwave observations to estimate land surface temperature during cloudy conditions

USDA-ARS?s Scientific Manuscript database

Land surface temperature (LST), a key ingredient for physically-based retrieval algorithms of hydrological states and fluxes, remains a poorly constrained parameter for global scale studies. The main two observational methods to remotely measure T are based on thermal infrared (TIR) observations and...

A thermal-based remote sensing modeling system for estimating daily evapotranspiration from field to global scales

USDA-ARS?s Scientific Manuscript database

Thermal-infrared (TIR) remote sensing of land surface temperature (LST) provides valuable information for quantifying root-zone water availability, evapotranspiration (ET) and crop condition as well as providing useful information for constraining prognostic land surface models. This presentation d...

Improving root-zone soil moisture estimations using dynamic root growth and crop phenology

USDA-ARS?s Scientific Manuscript database

Water Energy Balance (WEB) Soil Vegetation Atmosphere Transfer (SVAT) modelling can be used to estimate soil moisture by forcing the model with observed data such as precipitation and solar radiation. Recently, an innovative approach that assimilates remotely sensed thermal infrared (TIR) observatio...

Alcohol use by drivers fatally injured in motor vehicle collisions in Canada in 2007 and the previous 20 years

DOT National Transportation Integrated Search

2010-12-01

This leaflet provides information on the blood alcohol concentrations (BACs) of drivers fatally injured in motor vehicle collisions in the Canadian provinces and territories. The information is derived from the Traffic Injury Research Foundation (TIR...

Machine Learning Approach to Deconvolution of Thermal Infrared (TIR) Spectrum of Mercury Supporting MERTIS Onboard ESA/JAXA BepiColombo

NASA Astrophysics Data System (ADS)

Varatharajan, I.; D'Amore, M.; Maturilli, A.; Helbert, J.; Hiesinger, H.

2018-04-01

Machine learning approach to spectral unmixing of emissivity spectra of Mercury is carried out using endmember spectral library measured at simulated daytime surface conditions of Mercury. Study supports MERTIS payload onboard ESA/JAXA BepiColombo.

Chronic constriction injury-induced microRNA-146a-5p alleviates neuropathic pain through suppression of IRAK1/TRAF6 signaling pathway.

PubMed

Wang, Zhiyao; Liu, Fan; Wei, Min; Qiu, Yue; Ma, Chao; Shen, Le; Huang, Yuguang

2018-06-09

microRNA-146a-5p (miRNA-146a-5p) is a key molecule in the negative regulation pathway of TLRs and IL-1 receptor (TIR) signaling. Our recent study demonstrated that MyD88-dependent signaling pathway of TIR in the dorsal root ganglion (DRG) and spinal dorsal horn (SDH) plays a role in peripheral nerve injury-induced neuropathic pain. However, it was not clear whether and how miRNA-146a-5p regulates the TIR pathway of DRG and SDH in the development of neuropathic pain. The sciatic nerve chronic constriction injury (CCI) model of rat was used to induce chronic neuropathic pain. The levels and cellular distribution of miRNA-146a-5p were detected with quantitative real-time PCR (qPCR) and fluorescent in situ hybridization (FISH). The RNA level, protein level, and cellular distribution of IRAK1 and TRAF6 that is targeted by miRNA-146a-5p were detected with qPCR, western blot, and immunofluorescent. The pain-related behavioral effect of miRNA-146a-5p was accessed after intrathecal administration. Mechanical stimuli and radiant heat were used to evaluate mechanical allodynia and thermal hyperalgesia. We found that the level of miRNA-146a-5p significantly increased in L4-L6 DRGs and SDH after CCI surgery; meanwhile, the protein level of IRAK1 and TRAF6 in DRGs was significantly increased after CCI. Intrathecal injection of miR146a-5p agomir or miRNA-146a-5p antagomir regulates miRNA-146a-5p level of L4-L6 DRGs and SDH. We found that intrathecal injection of miR146a-5p agomir can alleviate mechanical and thermal hyperalgesia in CCI rats and reverse the upregulation of IRAK1 and TRAF6 of L4-L6 DRGs and SDH induced by CCI. We furthermore found that intrathecal injection of miRNA-146a-5p antagomir can exacerbate the mechanical and thermal pain-related behavior of CCI rats and meanwhile increase IRAK1 and TRAF6 of L4-L6 DRGs and SDH expression even further. miRNA-146a-5p of DRG and SDH can modulate the development of CCI-induced neuropathic pain through inhibition of IRAK1 and TRAF6 in the TIR signaling pathway. Hence, miRNA-146a-5p may serve as a potential therapeutic target for neuropathic pain.

Nonlinear viscous higher harmonics generation due to incident and reflecting internal wave beam collision

NASA Astrophysics Data System (ADS)

Aksu, Anil A.

2017-09-01

In this paper, we have considered the non-linear effects arising due to the collision of incident and reflected internal wave beams. It has already been shown analytically [Tabaei et al., "Nonlinear effects in reflecting and colliding internal wave beams," J. Fluid Mech. 526, 217-243 (2005)] and numerically [Rodenborn et al., "Harmonic generation by reflecting internal waves," Phys. Fluids 23, 026601 (2011)] that the internal wave beam collision generates the higher harmonics and mean flow in a linear stratification. In this paper, similar to previous analytical work, small amplitude wave theory is employed; however, it is formulated from energetics perspective which allows considering internal wave beams as the product of slowly varying amplitude and fast complex exponential. As a result, the mean energy propagation equation for the second harmonic wave is obtained. Finally, a similar dependence on the angle of incidence is obtained for the non-linear energy transfer to the second harmonic with previous analyses. A possible physical mechanism for this angle dependence on the second harmonic generation is also discussed here. In addition to previous studies, the viscous effects are also included in the mean energy propagation equation for the incident, the reflecting, and the second harmonic waves. Moreover, even though the mean flow obtained here is only confined to the interaction region, it is also affected by viscosity via the decay in the incident and the reflecting internal wave beams. Furthermore, a framework for the non-linear harmonic generation in non-linear stratification is also proposed here.

Improved power efficiency for very-high-temperature solar-thermal-cavity receivers

DOEpatents

McDougal, A.R.; Hale, R.R.

1982-04-14

This invention is an improved solar energy cavity receiver for exposing materials and components to high temperatures. The receiver includes a housing having an internal reflective surface defining a cavity and having an inlet for admitting solar radiation thereto. A photothermal absorber is positiond in the cavity to receive radiation from the inlet. A reflective baffle is positioned between the absorber and the inlet to severely restrict the re-radiation of energy through the inlet. The front surface of the baffle defines a narrow annulus with the internal reflective surface of the housing. The front surface of the baffle is contoured to reflect incoming radiation onto the internal surface of the housing, from which it is reflected through the annulus and onto the front surface of the absorber. The back surface of the baffle intercepts radiation from the front of the absorber. With this arrangement, a high percentage of the solar power input is retained in the cavity; thus, high internal temperatues are attained.

Power efficiency for very high temperature solar thermal cavity receivers

DOEpatents

McDougal, Allan R.; Hale, Robert R.

1984-01-01

This invention is an improved solar energy cavity receiver for exposing materials and components to high temperatures. The receiver includes a housing having an internal reflective surface defining a cavity and having an inlet for admitting solar radiation thereto. A photothermal absorber is positioned in the cavity to receive radiation from the inlet. A reflective baffle is positioned between the absorber and the inlet to severely restrict the re-radiation of energy through the inlet. The front surface of the baffle defines a narrow annulus with the internal reflective surface of the housing. The front surface of the baffle is contoured to reflect incoming radiation onto the internal surface of the housing, from which it is reflected through the annulus and onto the front surface of the absorber. The back surface of the baffle intercepts infrared radiation from the front of the absorber. With this arrangement, a high percentage of the solar power input is retained in the cavity; thus, high internal temperatures are attained.

U.S. EPA, Pesticide Product Label, PARTNER WDG, 11/04/1987

EPA Pesticide Factsheets

2011-04-14

... 1f.. (IIIP/on c*""'" IthoItI ~ 1rMw. 0Mtn0I,. "~NItt • .-tI.-b1 ~ iI fnIre!tf. ~tIr fIIICIIJ .... _IfIOIaI .. ~ "' ... VIII ... ! _~ .... illI:afMI .. ·i ~ Dft:tiIII. .... till c..a. .... Itu.;.. ...

Effective and efficient agricultural drainage pipe mapping with UAS thermal infrared imagery: a case study

USDA-ARS?s Scientific Manuscript database

Effective and efficient methods are needed to map agricultural subsurface drainage systems. Visible (VIS), near infrared (NIR), and/or thermal infrared (TIR) imagery obtained by unmanned aircraft systems (UAS) may provide a means for determining drainage pipe locations. Preliminary UAS surveys wit...

Screening Study on Feasibility of Standards of Performance ...

EPA Pesticide Factsheets

... VII ittttl w.xi Itl lln-.virc li .-illy Im 61,1, | ell to I III' ptl.rv'NS wt'l^lil | I linll.1l I"lis il|'|>l I- ^O f.'thl*' I,i fi,,,-l, M M.tir,-.-: ... 3 Industrial Factors K. Factor K is the ...

Topology of Document Retrieval Systems.

ERIC Educational Resources Information Center

Everett, Daniel M.; Cater, Steven C.

1992-01-01

Explains the use of a topological structure to examine the closeness between documents in retrieval systems and analyzes the topological structure of a vector-space model, a fuzzy-set model, an extended Boolean model, a probabilistic model, and a TIRS (Topological Information Retrieval System) model. Proofs for the results are appended. (17…

Many-Body Treatment of Navier-Stokes Fluids.

DTIC Science & Technology

1986-09-01

tir’,t’), is then given by S(r,tjr’,t’) = e(Tr)S"r,tlr’,t’) - l-T)SC(r,tIr ’,t’) (5.23) A__-__ _ kId. ik.(r--r) - iwlt -t’) (5.24) 8(r - r) ’Idwj 1

Mapping Daily Evapotranspiration at Field to Global Scales using Geostationary and Polar Orbiting Satellite Imagery

USDA-ARS?s Scientific Manuscript database

Thermal infrared (TIR) remote sensing of land-surface temperature (LST) provides valuable information about the sub-surface moisture status required for estimating evapotranspiration (ET) and detecting the onset and severity of drought. While empirical indices measuring anomalies in LST and vegetati...

Cloud tolerance of remote sensing technologies to measure land surface temperature

USDA-ARS?s Scientific Manuscript database

Conventional means to estimate land surface temperature (LST) from space relies on the thermal infrared (TIR) spectral window and is limited to cloud-free scenes. To also provide LST estimates during periods with clouds, a new method was developed to estimate LST based on passive microwave (MW) obse...

Using the Surface Temperature-Albedo Space to Separate Regional Soil and Vegetation Temperatures from ASTER Data

USDA-ARS?s Scientific Manuscript database

Soil and vegetation component temperatures in non-isothermal pixels encapsulate more physical meaning and are more applicable than composite temperatures. The component temperatures however are difficult to be obtained from thermal infrared (TIR) remote sensing data provided by single view angle obs...

Microwave implementation of two-source energy balance approach for estimating evapotranspiration

USDA-ARS?s Scientific Manuscript database

A newly developed microwave (MW) land surface temperature (LST) product is used to effectively substitute thermal infrared (TIR) based LST in the two-source energy balance approach (TSEB) for estimating ET from space. This TSEB land surface scheme, used in the Atmosphere Land Exchange Inverse (ALEXI...

Signal Processing of Shock-Wave Overpressure Records

DTIC Science & Technology

1981-08-01

SUPERPOSED GAGE-MOUNT RINGING. UNCLASSIFIED FIG. . FORIERSPECRUM O AN - WAV WIT SUPRPSE GAE-OUT RNGNG UNCLASSIFIED SM No. 1021 󈨏- 925 Pa E 0. 00 0"a... midi rfit-valotinrent pmn -ri or grant number oquiprancr mcxlel designation. firnite iamem. militlary project codte irlri ir. I, tir, IlII. 46winl

tir- and stx- positive Escherichia coli in stream waters in a metropolitan area

Treesearch

James A. Higgins; Kenneth T. Belt; Jeffrey S. Karns; Jonathan Russell-Anelli; Daniel R. Shelton

2005-01-01

Diarrheagenic Escherichia coli, which may include the enteropathogenic E. coli and the enterohemorrhagic E. coli, are a significant cause of diarrheal disease among infants and children in both developing and developed areas. Disease outbreaks related to freshwater exposure have been documented, but the presence...

The Impact of Prompted Narrative Writing during Internship on Reflective Practice: A Qualitative Study

ERIC Educational Resources Information Center

Levine, Rachel B.; Kern, David E.; Wright, Scott M.

2008-01-01

Narrative writing has been used to promote reflection and increased self-awareness among physicians. The purpose of this study was to determine the impact of prompted narrative writing on reflection. Thirty-two interns at 9 internal medicine residency programs participated in a year-long qualitative study about personal growth beginning in July of…

International Mindedness through the Looking Glass: Reflections on a Concept

ERIC Educational Resources Information Center

Castro, Paloma; Lundgren, Ulla; Woodin, Jane

2015-01-01

The aim of this article is to report and reflect on a research project involving the conceptualization of the term "International Mindedness", which is used across a range of International Baccalaureate (IB) global and local contexts. The research process involved both a critical analysis of IB official documents and a literature review…

Real time infrared aerosol analyzer

DOEpatents

Johnson, Stanley A.; Reedy, Gerald T.; Kumar, Romesh

1990-01-01

Apparatus for analyzing aerosols in essentially real time includes a virtual impactor which separates coarse particles from fine and ultrafine particles in an aerosol sample. The coarse and ultrafine particles are captured in PTFE filters, and the fine particles impact onto an internal light reflection element. The composition and quantity of the particles on the PTFE filter and on the internal reflection element are measured by alternately passing infrared light through the filter and the internal light reflection element, and analyzing the light through infrared spectrophotometry to identify the particles in the sample.