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Sample records for intraflagellar transport particle

  1. Electron-tomographic analysis of intraflagellar transport particle trains in situ.

    PubMed

    Pigino, Gaia; Geimer, Stefan; Lanzavecchia, Salvatore; Paccagnini, Eugenio; Cantele, Francesca; Diener, Dennis R; Rosenbaum, Joel L; Lupetti, Pietro

    2009-10-05

    Intraflagellar transport (IFT) is the bidirectional movement of multipolypeptide particles between the ciliary membrane and the axonemal microtubules, and is required for the assembly, maintenance, and sensory function of cilia and flagella. In this paper, we present the first high-resolution ultrastructural analysis of trains of flagellar IFT particles, using transmission electron microscopy and electron-tomographic analysis of sections from flat-embedded Chlamydomonas reinhardtii cells. Using wild-type and mutant cells with defects in IFT, we identified two different types of IFT trains: long, narrow trains responsible for anterograde transport; and short, compact trains underlying retrograde IFT. Both types of trains have characteristic repeats and patterns that vary as one sections longitudinally through the trains of particles. The individual IFT particles are highly complex, bridged to each other and to the outer doublet microtubules, and are closely apposed to the inner surface of the flagellar membrane.

  2. Isolation of intraflagellar transport trains.

    PubMed

    Mencarelli, Caterina; Mitchell, Aaron; Leoncini, Roberto; Rosenbaum, Joel; Lupetti, Pietro

    2013-08-01

    The intraflagellar transport (IFT) system was first identified in situ by electron microscopy in thin sections of plastic-embedded flagella as linear arrays of electrondense particles, located between the B tubules of the outer doublets and the flagellar membrane. These arrays of particles are referred to as IFT trains. Upon membrane rupture, IFT trains are thought to easily dissociate to yield soluble IFT particles, which are commonly purified through sucrose gradients as ∼16-17S complexes. The latters easily dissociate into two subcomplexes, named A and B. We report here the isolation, visualization, and identification by immunolabeling of flexible strings of IFT particles, which are structurally similar to in situ IFT trains and appear to be formed by both complex A and complex B polypeptides. Moreover, the particles forming isolated IFT trains are structurally similar to the individual particles found in the ∼17S gradient peak. Our results provide the first direct evidence that ∼17S particles do indeed compose the IFT trains. The paper also represents the first isolation of the IFT trains, and opens new possibilities for higher resolution studies on their structure and how particles are attached to each other to form the particle trains.

  3. Single-particle imaging reveals intraflagellar transport-independent transport and accumulation of EB1 in Chlamydomonas flagella.

    PubMed

    Harris, J Aaron; Liu, Yi; Yang, Pinfen; Kner, Peter; Lechtreck, Karl F

    2016-01-15

    The microtubule (MT) plus-end tracking protein EB1 is present at the tips of cilia and flagella; end-binding protein 1 (EB1) remains at the tip during flagellar shortening and in the absence of intraflagellar transport (IFT), the predominant protein transport system in flagella. To investigate how EB1 accumulates at the flagellar tip, we used in vivo imaging of fluorescent protein-tagged EB1 (EB1-FP) in Chlamydomonas reinhardtii. After photobleaching, the EB1 signal at the flagellar tip recovered within minutes, indicating an exchange with unbleached EB1 entering the flagella from the cell body. EB1 moved independent of IFT trains, and EB1-FP recovery did not require the IFT pathway. Single-particle imaging showed that EB1-FP is highly mobile along the flagellar shaft and displays a markedly reduced mobility near the flagellar tip. Individual EB1-FP particles dwelled for several seconds near the flagellar tip, suggesting the presence of stable EB1 binding sites. In simulations, the two distinct phases of EB1 mobility are sufficient to explain its accumulation at the tip. We propose that proteins uniformly distributed throughout the cytoplasm like EB1 accumulate locally by diffusion and capture; IFT, in contrast, might be required to transport proteins against cellular concentration gradients into or out of cilia.

  4. Regulation of cilium length and intraflagellar transport.

    PubMed

    Broekhuis, Joost R; Leong, Weng Y; Jansen, Gert

    2013-01-01

    Primary cilia are highly conserved sensory organelles that extend from the surface of almost all vertebrate cells. The importance of cilia is evident from their involvement in many diseases, called ciliopathies. Primary cilia contain a microtubular axoneme that is used as a railway for transport of both structural components and signaling proteins. This transport machinery is called intraflagellar transport (IFT). Cilia are dynamic organelles whose presence on the cell surface, morphology, length and function are highly regulated. It is clear that the IFT machinery plays an important role in this regulation. However, it is not clear how, for example environmental cues or cell fate decisions are relayed to modulate IFT and cilium morphology or function. This chapter presents an overview of molecules that have been shown to regulate cilium length and IFT. Several examples where signaling modulates IFT and cilium function are used to discuss the importance of these systems for the cell and for understanding of the etiology of ciliopathies.

  5. The intraflagellar transport protein IFT57 is required for cilia maintenance and regulates IFT-particle-kinesin-II dissociation in vertebrate photoreceptors.

    PubMed

    Krock, Bryan L; Perkins, Brian D

    2008-06-01

    Defects in protein transport within vertebrate photoreceptors can result in photoreceptor degeneration. In developing and mature photoreceptors, proteins targeted to the outer segment are transported through the connecting cilium via the process of intraflagellar transport (IFT). In studies of vertebrate IFT, mutations in any component of the IFT particle typically abolish ciliogenesis, suggesting that IFT proteins are equally required for IFT. To determine whether photoreceptor outer segment formation depends equally on individual IFT proteins, we compared the retinal phenotypes of IFT57 and IFT88 mutant zebrafish. IFT88 mutants failed to form outer segments, whereas IFT57 mutants formed short outer segments with reduced amounts of opsin. Our phenotypic analysis revealed that IFT57 is not essential for IFT, but is required for efficient IFT. In co-immunoprecipitation experiments from whole-animal extracts, we determined that kinesin II remained associated with the IFT particle in the absence of IFT57, but IFT20 did not. Additionally, kinesin II did not exhibit ATP-dependent dissociation from the IFT particle in IFT57 mutants. We conclude that IFT20 requires IFT57 to associate with the IFT particle and that IFT57 and/or IFT20 mediate kinesin II dissociation.

  6. Intraflagellar transport: a new player at the immune synapse.

    PubMed

    Finetti, Francesca; Paccani, Silvia Rossi; Rosenbaum, Joel; Baldari, Cosima T

    2011-04-01

    The assembly and maintenance of primary cilia, which orchestrate signaling pathways centrally implicated in cell proliferation, differentiation and migration, are ensured by multimeric protein particles in a process known as intraflagellar transport (IFT). It has recently been demonstrated that a number of IFT components are expressed in hematopoietic cells, which have no cilia. Here, we summarize data for an unexpected role of IFT proteins in immune synapse assembly and intracellular membrane trafficking in T lymphocytes, and discuss the hypothesis that the immune synapse could represent the functional homolog of the primary cilium in these cells.

  7. Intraflagellar transport (IFT) during assembly and disassembly of Chlamydomonas flagella.

    PubMed

    Dentler, William

    2005-08-15

    Intraflagellar transport (IFT) of particles along flagellar microtubules is required for the assembly and maintenance of eukaryotic flagella and cilia. In Chlamydomonas, anterograde and retrograde particles viewed by light microscopy average 0.12-microm and 0.06-microm diameter, respectively. Examination of IFT particle structure in growing flagella by electron microscopy revealed similar size aggregates composed of small particles linked to each other and to the membrane and microtubules. To determine the relationship between the number of particles and flagellar length, the rate and frequency of IFT particle movement was measured in nongrowing, growing, and shortening flagella. In all flagella, anterograde and retrograde IFT averaged 1.9 microm/s and 2.7 microm/s, respectively, but retrograde IFT was significantly slower in flagella shorter than 4 mum. The number of flagellar IFT particles was not fixed, but depended on flagellar length. Pauses in IFT particle entry into flagella suggest the presence of a periodic "gate" that permits up to 4 particles/s to enter a flagellum.

  8. The Role of Intraflagellar Transport in the Photoreceptor Sensory Cilium.

    PubMed

    Taub, Daniel G; Liu, Qin

    2016-01-01

    The photoreceptor is a complex specialized cell in which a major component responsible for visual transduction is the photoreceptor sensory cilium (PSC). Building and maintenance of the PSC requires the transport of large proteins along microtubules that extend from the inner segments to the outer segments. A key process, termed intraflagellar transport (IFT), has been recognized as an essential phenomenon for photoreceptor development and maintenance, and exciting new studies have highlighted its importance in retinal and cilia related diseases. This review focuses on the important roles of IFT players, including motor proteins, IFT proteins, and photoreceptor-specific cargos in photoreceptor sensory cilium. In addition, specific IFT components that are involved in inherited human diseases are discussed.

  9. Intraflagellar transport balances continuous turnover of outer doublet microtubules

    PubMed Central

    Marshall, Wallace F.; Rosenbaum, Joel L.

    2001-01-01

    A central question in cell biology is how cells determine the size of their organelles. Flagellar length control is a convenient system for studying organelle size regulation. Mechanistic models proposed for flagellar length regulation have been constrained by the assumption that flagella are static structures once they are assembled. However, recent work has shown that flagella are dynamic and are constantly turning over. We have determined that this turnover occurs at the flagellar tips, and that the assembly portion of the turnover is mediated by intraflagellar transport (IFT). Blocking IFT inhibits the incorporation of tubulin at the flagellar tips and causes the flagella to resorb. These results lead to a simple steady-state model for flagellar length regulation by which a balance of assembly and disassembly can effectively regulate flagellar length. PMID:11684707

  10. Primary Cilia and Intraflagellar Transport Proteins in Bone and Cartilage.

    PubMed

    Yuan, X; Yang, S

    2016-11-01

    Primary cilia, present on most mammalian cells, function as a sensor to sense the environment change and transduce signaling. Loss of primary cilia causes a group of human pleiotropic syndromes called Ciliopathies. Some of the ciliopathies display skeletal dysplasias, implying the important role of primary cilia in skeletal development and homeostasis. Emerging evidence has shown that loss or malfunction of primary cilia or ciliary proteins in bone and cartilage is associated with developmental and function defects. Intraflagellar transport (IFT) proteins are essential for cilia formation and/or function. In this review, we discuss the role of primary cilia and IFT proteins in the development of bone and cartilage, as well as the differentiation and mechanotransduction of mesenchymal stem cells, osteoblasts, osteocytes, and chondrocytes. We also include the role of primary cilia in tooth development and highlight the current advance of primary cilia and IFT proteins in the pathogenesis of cartilage diseases, including osteoarthritis, osteosarcoma, and chondrosarcoma.

  11. Intraflagellar Transport and Functional Analysis of Genes Required for Flagellum Formation in Trypanosomes

    PubMed Central

    Absalon, Sabrina; Blisnick, Thierry; Kohl, Linda; Toutirais, Géraldine; Doré, Gwénola; Julkowska, Daria; Tavenet, Arounie

    2008-01-01

    Intraflagellar transport (IFT) is the bidirectional movement of protein complexes required for cilia and flagella formation. We investigated IFT by analyzing nine conventional IFT genes and five novel putative IFT genes (PIFT) in Trypanosoma brucei that maintain its existing flagellum while assembling a new flagellum. Immunostaining against IFT172 or expression of tagged IFT20 or green fluorescent protein GFP::IFT52 revealed the presence of IFT proteins along the axoneme and at the basal body and probasal body regions of both old and new flagella. IFT particles were detected by electron microscopy and exhibited a strict localization to axonemal microtubules 3–4 and 7–8, suggesting the existence of specific IFT tracks. Rapid (>3 μm/s) bidirectional intraflagellar movement of GFP::IFT52 was observed in old and new flagella. RNA interference silencing demonstrated that all individual IFT and PIFT genes are essential for new flagellum construction but the old flagellum remained present. Inhibition of IFTB proteins completely blocked axoneme construction. Absence of IFTA proteins (IFT122 and IFT140) led to formation of short flagella filled with IFT172, indicative of defects in retrograde transport. Two PIFT proteins turned out to be required for retrograde transport and three for anterograde transport. Finally, flagellum membrane elongation continues despite the absence of axonemal microtubules in all IFT/PIFT mutant. PMID:18094047

  12. Prostaglandin signaling regulates ciliogenesis by modulating intraflagellar transport

    PubMed Central

    Jin, Daqing; Ni, Terri T.; Sun, Jianjian; Wan, Haiyan; Amack, Jeffrey D.; Yu, Guangju; Fleming, Jonathan; Chiang, Chin; Li, Wenyan; Papierniak, Anna; Cheepala, Satish; Conseil, Gwenaëlle; Cole, Susan P.C.; Zhou, Bin; Drummond, Iain A.; Schuetz, John D.; Malicki, Jarema; Zhong, Tao P.

    2014-01-01

    Cilia are microtubule-based organelles that mediate signal transduction in a variety of tissues. Despite their importance, the signaling cascades that regulate cilia formation remain incompletely understood. Here we report that prostaglandin signaling affects ciliogenesis by regulating anterograde intraflagellar transport (IFT). Zebrafish leakytail (lkt) mutants display ciliogenesis defects, and lkt locus encodes an ATP-binding cassette transporter (ABCC4). We show that Lkt/ABCC4 localizes to the cell membrane and exports prostaglandin E2 (PGE2), a function that is abrogated by the Lkt/ABCC4T804M mutant. PGE2 synthesis enzyme Cyclooxygenase-1 and its receptor, EP4, which localizes to the cilium and activates cAMP-mediated signaling cascade, are required for cilia formation and elongation. Importantly, PGE2 signaling increases anterograde but not retrograde velocity of IFT and promotes ciliogenesis in mammalian cells. These findings lead us to propose that Lkt/ABCC4-mediated PGE2 signaling acts through a ciliary G-protein-coupled receptor, EP4, to upregulate cAMP synthesis and increase anterograde IFT, thereby promoting ciliogenesis. PMID:25173977

  13. Prostaglandin signalling regulates ciliogenesis by modulating intraflagellar transport.

    PubMed

    Jin, Daqing; Ni, Terri T; Sun, Jianjian; Wan, Haiyan; Amack, Jeffrey D; Yu, Guangju; Fleming, Jonathan; Chiang, Chin; Li, Wenyan; Papierniak, Anna; Cheepala, Satish; Conseil, Gwenaëlle; Cole, Susan P C; Zhou, Bin; Drummond, Iain A; Schuetz, John D; Malicki, Jarema; Zhong, Tao P

    2014-09-01

    Cilia are microtubule-based organelles that mediate signal transduction in a variety of tissues. Despite their importance, the signalling cascades that regulate cilium formation remain incompletely understood. Here we report that prostaglandin signalling affects ciliogenesis by regulating anterograde intraflagellar transport (IFT). Zebrafish leakytail (lkt) mutants show ciliogenesis defects, and the lkt locus encodes an ATP-binding cassette transporter (ABCC4). We show that Lkt/ABCC4 localizes to the cell membrane and exports prostaglandin E2 (PGE2), a function that is abrogated by the Lkt/ABCC4(T804M) mutant. PGE2 synthesis enzyme cyclooxygenase-1 and its receptor, EP4, which localizes to the cilium and activates the cyclic-AMP-mediated signalling cascade, are required for cilium formation and elongation. Importantly, PGE2 signalling increases anterograde but not retrograde velocity of IFT and promotes ciliogenesis in mammalian cells. These findings lead us to propose that Lkt/ABCC4-mediated PGE2 signalling acts through a ciliary G-protein-coupled receptor, EP4, to upregulate cAMP synthesis and increase anterograde IFT, thereby promoting ciliogenesis.

  14. Intraflagellar transport (IFT) role in ciliary assembly, resorption and signalling.

    PubMed

    Pedersen, Lotte B; Rosenbaum, Joel L

    2008-01-01

    Cilia and flagella have attracted tremendous attention in recent years as research demonstrated crucial roles for these organelles in coordinating a number of physiologically and developmentally important signaling pathways, including the platelet-derived growth factor receptor (PDGFR) alpha, Sonic hedgehog, polycystin, and Wnt pathways. In addition, the realization that defective assembly or function of cilia can cause a plethora of diseases and developmental defects ("ciliopathies") has increased focus on the mechanisms by which these antenna-like, microtubular structures assemble. Ciliogenesis is a complex, multistep process that is tightly coordinated with cell cycle progression and differentiation. The ciliary axoneme is extended from a modified centriole, the basal body, which migrates to and docks onto the apical plasma membrane early in ciliogenesis as cells enter growth arrest. The ciliary axoneme is elongated via intraflagellar transport (IFT), a bidirectional transport system that tracks along the polarized microtubules of the axoneme, and which is required for assembly of almost all cilia and flagella. Here, we provide an overview of ciliogenesis with particular emphasis on the molecular mechanisms and functions of IFT. In addition to a general, up-to-date description of IFT, we discuss mechanisms by which proteins are selectively targeted to the ciliary compartment, with special focus on the ciliary transition zone. Finally, we briefly review the role of IFT in cilia-mediated signaling, including how IFT is directly involved in moving signaling moieties into and out of the ciliary compartment.

  15. Unique spatiotemporal requirements for intraflagellar transport genes during forebrain development

    PubMed Central

    Chang, Ching-Fang; Cionni, Megan; Brugmann, Samantha A.

    2017-01-01

    Primary cilia are organelles extended from virtually all cells and are required for the proper regulation of a number of canonical developmental pathways. The role in cortical development of proteins important for ciliary form and function is a relatively understudied area. Here we have taken a genetic approach to define the role in forebrain development of three intraflagellar transport proteins known to be important for primary cilia function. We have genetically ablated Kif3a, Ift88, and Ttc21b in a series of specific spatiotemporal domains. The resulting phenotypes allow us to draw several conclusions. First, we conclude that the Ttc21b cortical phenotype is not due to the activity of Ttc21b within the brain itself. Secondly, some of the most striking phenotypes are from ablations in the neural crest cells and the adjacent surface ectoderm indicating that cilia transduce critical tissue—tissue interactions in the developing embryonic head. Finally, we note striking differences in phenotypes from ablations only one embryonic day apart, indicating very discrete spatiotemporal requirements for these three genes in cortical development. PMID:28291836

  16. Crystal structure of the intraflagellar transport complex 25/27

    PubMed Central

    Bhogaraju, Sagar; Taschner, Michael; Morawetz, Michaela; Basquin, Claire; Lorentzen, Esben

    2011-01-01

    The cilium is an important organelle that is found on many eukaryotic cells, where it serves essential functions in motility, sensory reception and signalling. Intraflagellar transport (IFT) is a vital process for the formation and maintenance of cilia. We have determined the crystal structure of Chlamydomonas reinhardtii IFT25/27, an IFT sub-complex, at 2.6 Å resolution. IFT25 and IFT27 interact via a conserved interface that we verify biochemically using structure-guided mutagenesis. IFT27 displays the fold of Rab-like small guanosine triphosphate hydrolases (GTPases), binds GTP and GDP with micromolar affinity and has very low intrinsic GTPase activity, suggesting that it likely requires a GTPase-activating protein (GAP) for robust GTP turnover. A patch of conserved surface residues contributed by both IFT25 and IFT27 is found adjacent to the GTP-binding site and could mediate the binding to other IFT proteins as well as to a potential GAP. These results provide the first step towards a high-resolution structural understanding of the IFT complex. PMID:21505417

  17. Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery.

    PubMed

    Prevo, Bram; Scholey, Jonathan M; Peterman, Erwin J G

    2017-03-25

    Intraflagellar transport (IFT) is a form of motor-dependent cargo transport that is essential for the assembly, maintenance, and length control of cilia, which play critical roles in motility, sensory reception, and signal transduction in virtually all eukaryotic cells. During IFT, anterograde kinesin-2 and retrograde IFT dynein motors drive the bidirectional transport of IFT trains that deliver cargo, for example, axoneme precursors such as tubulins as well as molecules of the signal transduction machinery, to their site of assembly within the cilium. Following its discovery in Chlamydomonas, IFT has emerged as a powerful model system for studying general principles of motor-dependent cargo transport and we now appreciate the diversity that exists in the mechanism of IFT within cilia of different cell types. The absence of heterotrimeric kinesin-2 function, for example, causes a complete loss of both IFT and cilia in Chlamydomonas, but following its loss in Caenorhabditis elegans, where its primary function is loading the IFT machinery into cilia, homodimeric kinesin-2-driven IFT persists and assembles a full-length cilium. Generally, heterotrimeric kinesin-2 and IFT dynein motors are thought to play widespread roles as core IFT motors, whereas homodimeric kinesin-2 motors are accessory motors that mediate different functions in a broad range of cilia, in some cases contributing to axoneme assembly or the delivery of signaling molecules but in many other cases their ciliary functions, if any, remain unknown. In this review, we focus on mechanisms of motor action, motor cooperation, and motor-dependent cargo delivery during IFT. © 2017 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.

  18. Intraflagellar transport dynein is autoinhibited by trapping of its mechanical and track-binding elements.

    PubMed

    Toropova, Katerina; Mladenov, Miroslav; Roberts, Anthony J

    2017-05-01

    Cilia are multifunctional organelles that are constructed using intraflagellar transport (IFT) of cargo to and from their tip. It is widely held that the retrograde IFT motor, dynein-2, must be controlled in order to reach the ciliary tip and then unleashed to power the return journey. However, the mechanism is unknown. Here, we systematically define the mechanochemistry of human dynein-2 motors as monomers, dimers, and multimotor assemblies with kinesin-II. Combining these data with insights from single-particle EM, we discover that dynein-2 dimers are intrinsically autoinhibited. Inhibition is mediated by trapping dynein-2's mechanical 'linker' and 'stalk' domains within a novel motor-motor interface. We find that linker-mediated inhibition enables efficient transport of dynein-2 by kinesin-II in vitro. These results suggest a conserved mechanism for autoregulation among dimeric dyneins, which is exploited as a switch for dynein-2's recycling activity during IFT.

  19. The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery

    PubMed Central

    Toriyama, Michinori; Lee, Chanjae; Taylor, S. Paige; Duran, Ivan; Cohn, Daniel H.; Bruel, Ange-Line; Tabler, Jacqueline M.; Drew, Kevin; Kelley, Marcus R.; Kim, Sukyoung; Park, Tae Joo; Braun, Daniella; Pierquin, Ghislaine; Biver, Armand; Wagner, Kerstin; Malfroot, Anne; Panigrahi, Inusha; Franco, Brunella; Al-lami, Hadeel Adel; Yeung, Yvonne; Choi, Yeon Ja; Duffourd, Yannis; Faivre, Laurence; Rivière, Jean-Baptiste; Chen, Jiang; Liu, Karen J.; Marcotte, Edward M.; Hildebrandt, Friedhelm; Thauvin-Robinet, Christel; Krakow, Deborah; Jackson, Peter K.; Wallingford, John B.

    2016-01-01

    Summary Cilia use microtubule-based intraflagellar transport (IFT) to organize intercellular signaling. The ciliopathies are a spectrum of human disease resulting from defects in cilia structure or function. Mechanisms regulating assembly of ciliary multiprotein complexes and their transport to the base of cilia remain largely unknown. Combine proteomics, in vivo imaging, and genetic analysis of proteins linked to planar cell polarity (Inturned, Fuzzy, WDPCP), we identified and characterized a new genetic module, which we term CPLANE (ciliogenesis and planar polarity effector) and an extensive associated protein network. CPLANE proteins physically and functionally interact with the poorly understood ciliopathy protein Jbts17 at basal bodies, where they act to recruit a specific subset of IFT-A proteins. In the absence of CPLANE, defective IFT-A particles enter the axoneme, and IFT-B trafficking is severely perturbed. Accordingly, mutation of CPLANE genes elicits specific ciliopathy phenotypes in mouse models and is associated with novel ciliopathies in human patients. PMID:27158779

  20. Intraflagellar transport (IFT) cargo: IFT transports flagellar precursors to the tip and turnover products to the cell body.

    PubMed

    Qin, Hongmin; Diener, Dennis R; Geimer, Stefan; Cole, Douglas G; Rosenbaum, Joel L

    2004-01-19

    Intraflagellar transport (IFT) is the bidirectional movement of multisubunit protein particles along axonemal microtubules and is required for assembly and maintenance of eukaryotic flagella and cilia. One posited role of IFT is to transport flagellar precursors to the flagellar tip for assembly. Here, we examine radial spokes, axonemal subunits consisting of 22 polypeptides, as potential cargo for IFT. Radial spokes were found to be partially assembled in the cell body, before being transported to the flagellar tip by anterograde IFT. Fully assembled radial spokes, detached from axonemal microtubules during flagellar breakdown or turnover, are removed from flagella by retrograde IFT. Interactions between IFT particles, motors, radial spokes, and other axonemal proteins were verified by coimmunoprecipitation of these proteins from the soluble fraction of Chlamydomonas flagella. These studies indicate that one of the main roles of IFT in flagellar assembly and maintenance is to transport axonemal proteins in and out of the flagellum.

  1. Functional exploration of the IFT-A complex in intraflagellar transport and ciliogenesis.

    PubMed

    Zhu, Bing; Zhu, Xin; Wang, Limei; Liang, Yinwen; Feng, Qianqian; Pan, Junmin

    2017-02-01

    Intraflagellar transport (IFT) particles or trains are composed of IFT-A and IFT-B complexes. To assess the working mechanism of the IFT-A complex in IFT and ciliogenesis, we have analyzed ift43 mutants of Chlamydomnonas in conjunction with mutants of the other IFT-A subunits. An ift43 null mutant or a mutant with a partial deletion of the IFT43 conserved domain has no or short flagella. The mutants accumulate not only IFT-B but also IFT-Ain the short flagella, which is in contrast to an ift140 null mutant. The IFT43 conserved domain is necessary and sufficient for the function of IFT43. IFT43 directly interacts with IFT121 and loss of IFT43 results in instability of IFT-A. A construct with a partial deletion of the IFT43 conserved domain is sufficient to rescue the instability phenotype of IFT-A, but results in diminishing of IFT-A at the peri-basal body region. We have further provided evidence for the direct interactions within the IFT-A complex and shown that the integrity of IFT-A is important for its stability and cellular localization. Finally, we show that both IFT43 and IFT140 are involved in mobilizing ciliary precursors from the cytoplasmic pool during flagellar regeneration, suggesting a novel role of IFT-A in transporting ciliary components in the cytoplasm to the peri-basal body region.

  2. Functional exploration of the IFT-A complex in intraflagellar transport and ciliogenesis

    PubMed Central

    Zhu, Bing; Zhu, Xin; Wang, Limei; Liang, Yinwen; Feng, Qianqian

    2017-01-01

    Intraflagellar transport (IFT) particles or trains are composed of IFT-A and IFT-B complexes. To assess the working mechanism of the IFT-A complex in IFT and ciliogenesis, we have analyzed ift43 mutants of Chlamydomnonas in conjunction with mutants of the other IFT-A subunits. An ift43 null mutant or a mutant with a partial deletion of the IFT43 conserved domain has no or short flagella. The mutants accumulate not only IFT-B but also IFT-Ain the short flagella, which is in contrast to an ift140 null mutant. The IFT43 conserved domain is necessary and sufficient for the function of IFT43. IFT43 directly interacts with IFT121 and loss of IFT43 results in instability of IFT-A. A construct with a partial deletion of the IFT43 conserved domain is sufficient to rescue the instability phenotype of IFT-A, but results in diminishing of IFT-A at the peri-basal body region. We have further provided evidence for the direct interactions within the IFT-A complex and shown that the integrity of IFT-A is important for its stability and cellular localization. Finally, we show that both IFT43 and IFT140 are involved in mobilizing ciliary precursors from the cytoplasmic pool during flagellar regeneration, suggesting a novel role of IFT-A in transporting ciliary components in the cytoplasm to the peri-basal body region. PMID:28207750

  3. WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia.

    PubMed

    Patel-King, Ramila S; Gilberti, Renée M; Hom, Erik F Y; King, Stephen M

    2013-09-01

    Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163 [FAP163]) as being closely related to the D1bIC(FAP133) intermediate chain (IC) of the dynein that powers this movement. Biochemical analysis revealed that FAP163 is present in the flagellar matrix and is actively trafficked by IFT. Furthermore, FAP163 copurified with D1bIC(FAP133) and the LC8 dynein light chain, indicating that it is an integral component of the retrograde IFT dynein. To assess the functional role of FAP163, we generated an RNA interference knockdown of the orthologous protein (WD60) in planaria. The Smed-wd60(RNAi) animals had a severe ciliary assembly defect that dramatically compromised whole-organism motility. Most cilia were present as short stubs that had accumulated large quantities of IFT particle-like material between the doublet microtubules and the membrane. The few remaining approximately full-length cilia had a chaotic beat with a frequency reduced from 24 to ∼10 Hz. Thus WD60/FAP163 is a dynein IC that is absolutely required for retrograde IFT and ciliary assembly.

  4. IFT57 stabilizes the assembled intraflagellar transport complex and mediates transport of motility-related flagellar cargo.

    PubMed

    Jiang, Xue; Hernandez, Daniel; Hernandez, Catherine; Ding, Zhaolan; Nan, Beiyan; Aufderheide, Karl; Qin, Hongmin

    2017-03-01

    Intraflagellar transport (IFT) is essential for the assembly and maintenance of flagella and cilia. Recent biochemical studies have shown that IFT complex B (IFT-B) is comprised of two subcomplexes, IFT-B1 and IFT-B2. The IFT-B2 subunit IFT57 lies at the interface between IFT-B1 and IFT-B2. Here, using a Chlamydomonasreinhardtii mutant for IFT57, we tested whether IFT57 is required for IFT-B complex assembly by bridging IFT-B1 and IFT-B2 together. In the ift57-1 mutant, levels of IFT57 and other IFT-B proteins were greatly reduced at the whole-cell level. However, strikingly, in the protease-free flagellar compartment, while the level of IFT57 was reduced, the levels of other IFT particle proteins were not concomitantly reduced but were present at the wild-type level. The IFT movement of the IFT57-deficient IFT particles was also unchanged. Moreover, IFT57 depletion disrupted the flagellar waveform, leading to cell swimming defects. Analysis of the mutant flagellar protein composition showed that certain axonemal proteins were altered. Taken together, these findings suggest that IFT57 does not play an essential structural role in the IFT particle complex but rather functions to prevent it from degradation. Additionally, IFT57 is involved in transporting specific motility-related proteins.

  5. TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport

    PubMed Central

    Schmidts, Miriam; Hou, Yuqing; Cortés, Claudio R.; Mans, Dorus A.; Huber, Celine; Boldt, Karsten; Patel, Mitali; van Reeuwijk, Jeroen; Plaza, Jean-Marc; van Beersum, Sylvia E. C.; Yap, Zhi Min; Letteboer, Stef J. F.; Taylor, S. Paige; Herridge, Warren; Johnson, Colin A.; Scambler, Peter J.; Ueffing, Marius; Kayserili, Hulya; Krakow, Deborah; King, Stephen M.; Beales, Philip L.; Al-Gazali, Lihadh; Wicking, Carol; Cormier-Daire, Valerie; Roepman, Ronald; Mitchison, Hannah M.; Witman, George B.; Al-Turki, Saeed; Anderson, Carl; Anney, Richard; Antony, Dinu; Asimit, Jennifer; Ayub, Mohammad; Barrett, Jeff; Barroso, Inês; Bentham, Jamie; Bhattacharya, Shoumo; Blackwood, Douglas; Bobrow, Martin; Bochukova, Elena; Bolton, Patrick; Boustred, Chris; Breen, Gerome; Brion, Marie-Jo; Brown, Andrew; Calissano, Mattia; Carss, Keren; Chatterjee, Krishna; Chen, Lu; Cirak, Sebhattin; Clapham, Peter; Clement, Gail; Coates, Guy; Collier, David; Cosgrove, Catherine; Cox, Tony; Craddock, Nick; Crooks, Lucy; Curran, Sarah; Daly, Allan; Danecek, Petr; Smith, George Davey; Day-Williams, Aaron; Day, Ian; Durbin, Richard; Edkins, Sarah; Ellis, Peter; Evans, David; Farooqi, I. Sadaf; Fatemifar, Ghazaleh; Fitzpatrick, David; Flicek, Paul; Floyd, Jamie; Foley, A. Reghan; Franklin, Chris; Futema, Marta; Gallagher, Louise; Gaunt, Tom; Geschwind, Daniel; Greenwood, Celia; Grozeva, Detelina; Guo, Xiaosen; Gurling, Hugh; Hart, Deborah; Hendricks, Audrey; Holmans, Peter; Huang, Jie; Humphries, Steve E.; Hurles, Matt; Hysi, Pirro; Jackson, David; Jamshidi, Yalda; Jewell, David; Chris, Joyce; Kaye, Jane; Keane, Thomas; Kemp, John; Kennedy, Karen; Kent, Alastair; Kolb-Kokocinski, Anja; Lachance, Genevieve; Langford, Cordelia; Lee, Irene; Li, Rui; Li, Yingrui; Ryan, Liu; Lönnqvist, Jouko; Lopes, Margarida; MacArthur, Daniel G.; Massimo, Mangino; Marchini, Jonathan; Maslen, John; McCarthy, Shane; McGuffin, Peter; McIntosh, Andrew; McKechanie, Andrew; McQuillin, Andrew; Memari, Yasin; Metrustry, Sarah; Min, Josine; Moayyeri, Alireza; Morris, James; Muddyman, Dawn; Muntoni, Francesco; Northstone, Kate; O'Donovan, Michael; O'Rahilly, Stephen; Onoufriadis, Alexandros; Oualkacha, Karim; Owen, Michael; Palotie, Aarno; Panoutsopoulou, Kalliope; Parker, Victoria; Parr, Jeremy; Paternoster, Lavinia; Paunio, Tiina; Payne, Felicity; Perry, John; Pietilainen, Olli; Plagnol, Vincent; Quail, Michael A.; Quaye, Lydia; Raymond, Lucy; Rehnström, Karola; Brent Richards, J.; Ring, Sue; Ritchie, Graham R S; Savage, David B.; Schoenmakers, Nadia; Semple, Robert K.; Serra, Eva; Shihab, Hashem; Shin, So-Youn; Skuse, David; Small, Kerrin; Smee, Carol; Soler, Artigas María; Soranzo, Nicole; Southam, Lorraine; Spector, Tim; St Pourcain, Beate; St. Clair, David; Stalker, Jim; Surdulescu, Gabriela; Suvisaari, Jaana; Tachmazidou, Ioanna; Tian, Jing; Timpson, Nic; Tobin, Martin; Valdes, Ana; van Kogelenberg, Margriet; Vijayarangakannan, Parthiban; Wain, Louise; Walter, Klaudia; Wang, Jun; Ward, Kirsten; Wheeler, Ellie; Whittall, Ros; Williams, Hywel; Williamson, Kathy; Wilson, Scott G.; Wong, Kim; Whyte, Tamieka; ChangJiang, Xu; Zeggini, Eleftheria; Zhang, Feng; Zheng, Hou-Feng

    2015-01-01

    The analysis of individuals with ciliary chondrodysplasias can shed light on sensitive mechanisms controlling ciliogenesis and cell signalling that are essential to embryonic development and survival. Here we identify TCTEX1D2 mutations causing Jeune asphyxiating thoracic dystrophy with partially penetrant inheritance. Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery. In complex with several IFT dynein light chains, it is required for correct vertebrate skeletal formation but may be functionally redundant under certain conditions. PMID:26044572

  6. A tissue-specific role for intraflagellar transport genes during craniofacial development

    PubMed Central

    Williams, Trevor J.; Snedeker, John; Brugmann, Samantha A.

    2017-01-01

    Primary cilia are nearly ubiquitous, cellular projections that function to transduce molecular signals during development. Loss of functional primary cilia has a particularly profound effect on the developing craniofacial complex, causing several anomalies including craniosynostosis, micrognathia, midfacial dysplasia, cleft lip/palate and oral/dental defects. Development of the craniofacial complex is an intricate process that requires interactions between several different tissues including neural crest cells, neuroectoderm and surface ectoderm. To understand the tissue-specific requirements for primary cilia during craniofacial development we conditionally deleted three separate intraflagellar transport genes, Kif3a, Ift88 and Ttc21b with three distinct drivers, Wnt1-Cre, Crect and AP2-Cre which drive recombination in neural crest, surface ectoderm alone, and neural crest, surface ectoderm and neuroectoderm, respectively. We found that tissue-specific conditional loss of ciliary genes with different functions produces profoundly different facial phenotypes. Furthermore, analysis of basic cellular behaviors in these mutants suggests that loss of primary cilia in a distinct tissue has unique effects on development of adjacent tissues. Together, these data suggest specific spatiotemporal roles for intraflagellar transport genes and the primary cilium during craniofacial development. PMID:28346501

  7. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella.

    PubMed

    Ishikawa, Hiroaki; Ide, Takahiro; Yagi, Toshiki; Jiang, Xue; Hirono, Masafumi; Sasaki, Hiroyuki; Yanagisawa, Haruaki; Wemmer, Kimberly A; Stainier, Didier Yr; Qin, Hongmin; Kamiya, Ritsu; Marshall, Wallace F

    2014-01-01

    Cilia/flagella are assembled and maintained by the process of intraflagellar transport (IFT), a highly conserved mechanism involving more than 20 IFT proteins. However, the functions of individual IFT proteins are mostly unclear. To help address this issue, we focused on a putative IFT protein TTC26/DYF13. Using live imaging and biochemical approaches we show that TTC26/DYF13 is an IFT complex B protein in mammalian cells and Chlamydomonas reinhardtii. Knockdown of TTC26/DYF13 in zebrafish embryos or mutation of TTC26/DYF13 in C. reinhardtii, produced short cilia with abnormal motility. Surprisingly, IFT particle assembly and speed were normal in dyf13 mutant flagella, unlike in other IFT complex B mutants. Proteomic and biochemical analyses indicated a particular set of proteins involved in motility was specifically depleted in the dyf13 mutant. These results support the concept that different IFT proteins are responsible for different cargo subsets, providing a possible explanation for the complexity of the IFT machinery. DOI: http://dx.doi.org/10.7554/eLife.01566.001.

  8. Microtubule doublets are double-track railways for intraflagellar transport trains.

    PubMed

    Stepanek, Ludek; Pigino, Gaia

    2016-05-06

    The cilium is a large macromolecular machine that is vital for motility, signaling, and sensing in most eukaryotic cells. Its conserved core structure, the axoneme, contains nine microtubule doublets, each comprising a full A-microtubule and an incomplete B-microtubule. However, thus far, the function of this doublet geometry has not been understood. We developed a time-resolved correlative fluorescence and three-dimensional electron microscopy approach to investigate the dynamics of intraflagellar transport (IFT) trains, which carry ciliary building blocks along microtubules during the assembly and disassembly of the cilium. Using this method, we showed that each microtubule doublet is used as a bidirectional double-track railway: Anterograde IFT trains move along B-microtubules, and retrograde trains move along A-microtubules. Thus, the microtubule doublet geometry provides direction-specific rails to coordinate bidirectional transport of ciliary components.

  9. Function and regulation of primary cilia and intraflagellar transport proteins in the skeleton

    PubMed Central

    Yuan, Xue; Serra, Rosa A.; Yang, Shuying

    2014-01-01

    Primary cilia are microtubule-based organelles that project from the cell surface to enable transduction of various developmental signaling pathways. The process of intraflagellar transport (IFT) is crucial for the building and maintenance of primary cilia. Ciliary dysfunction has been found in a range of disorders called ciliopathies, some of which display severe skeletal dysplasias. In recent years, interest has grown in uncovering the function of primary cilia/IFT proteins in bone development, mechanotransduction, and cellular regulation. We summarize recent advances in understanding the function of cilia and IFT proteins in the regulation of cell differentiation in osteoblasts, osteocytes, chondrocytes, and mesenchymal stem cells (MSCs). We also discuss the mechanosensory function of cilia and IFT proteins in bone cells, cilia orientation, and other functions of cilia in chondrocytes. PMID:24961486

  10. Function and regulation of primary cilia and intraflagellar transport proteins in the skeleton.

    PubMed

    Yuan, Xue; Serra, Rosa A; Yang, Shuying

    2015-01-01

    Primary cilia are microtubule-based organelles that project from the cell surface to enable transduction of various developmental signaling pathways. The process of intraflagellar transport (IFT) is crucial for the building and maintenance of primary cilia. Ciliary dysfunction has been found in a range of disorders called ciliopathies, some of which display severe skeletal dysplasias. In recent years, interest has grown in uncovering the function of primary cilia/IFT proteins in bone development, mechanotransduction, and cellular regulation. We summarize recent advances in understanding the function of cilia and IFT proteins in the regulation of cell differentiation in osteoblasts, osteocytes, chondrocytes, and mesenchymal stem cells (MSCs). We also discuss the mechanosensory function of cilia and IFT proteins in bone cells, cilia orientation, and other functions of cilia in chondrocytes.

  11. The GTPase IFT27 is involved in both anterograde and retrograde intraflagellar transport.

    PubMed

    Huet, Diego; Blisnick, Thierry; Perrot, Sylvie; Bastin, Philippe

    2014-04-24

    The construction of cilia and flagella depends on intraflagellar transport (IFT), the bidirectional movement of two protein complexes (IFT-A and IFT-B) driven by specific kinesin and dynein motors. IFT-B and kinesin are associated to anterograde transport whereas IFT-A and dynein participate to retrograde transport. Surprisingly, the small GTPase IFT27, a member of the IFT-B complex, turns out to be essential for retrograde cargo transport in Trypanosoma brucei. We reveal that this is due to failure to import both the IFT-A complex and the IFT dynein into the flagellar compartment. To get further molecular insight about the role of IFT27, GDP- or GTP-locked versions were expressed in presence or absence of endogenous IFT27. The GDP-locked version is unable to enter the flagellum and to interact with other IFT-B proteins and its sole expression prevents flagellum formation. These findings demonstrate that a GTPase-competent IFT27 is required for association to the IFT complex and that IFT27 plays a role in the cargo loading of the retrograde transport machinery.DOI: http://dx.doi.org/10.7554/eLife.02419.001.

  12. Intraflagellar transport is required for the vectorial movement of TRPV channels in the ciliary membrane.

    PubMed

    Qin, Hongmin; Burnette, Dylan T; Bae, Young-Kyung; Forscher, Paul; Barr, Maureen M; Rosenbaum, Joel L

    2005-09-20

    The membranes of all eukaryotic motile (9 + 2) and immotile primary (9 + 0) cilia harbor channels and receptors involved in sensory transduction (reviewed by). These membrane proteins are transported from the cytoplasm onto the ciliary membrane by vesicles targeted for exocytosis at a point adjacent to the ciliary basal body. Here, we use time-lapse fluorescence microscopy to demonstrate that select GFP-tagged sensory receptors undergo rapid vectorial transport along the entire length of the cilia of Caenorhabditis elegans sensory neurons. Transient receptor potential vanilloid (TRPV) channels OSM-9 and OCR-2 move in ciliary membranes at rates comparable to the intraflagellar transport (IFT) machinery located between the membrane and the underlying axonemal microtubules. OSM-9 motility is disrupted in certain IFT mutant backgrounds. Surprisingly, motility of transient receptor potential polycystin (TRPP) channel PKD-2 (polycystic kidney disease-2), a mechano-receptor, was not detected. Our study demonstrates that IFT, previously shown to be necessary for transport of axonemal components, is also involved in the motility of TRPV membrane protein movement along cilia of C. elegans sensory cells.

  13. Disruption of intraflagellar protein transport in photoreceptor cilia causes Leber congenital amaurosis in humans and mice

    PubMed Central

    Boldt, Karsten; Mans, Dorus A.; Won, Jungyeon; van Reeuwijk, Jeroen; Vogt, Andreas; Kinkl, Norbert; Letteboer, Stef J.F.; Hicks, Wanda L.; Hurd, Ron E.; Naggert, Jürgen K.; Texier, Yves; den Hollander, Anneke I.; Koenekoop, Robert K.; Bennett, Jean; Cremers, Frans P.M.; Gloeckner, Christian J.; Nishina, Patsy M.; Roepman, Ronald; Ueffing, Marius

    2011-01-01

    The mutations that cause Leber congenital amaurosis (LCA) lead to photoreceptor cell death at an early age, causing childhood blindness. To unravel the molecular basis of LCA, we analyzed how mutations in LCA5 affect the connectivity of the encoded protein lebercilin at the interactome level. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Using a generally applicable affinity proteomics approach, we showed that lebercilin specifically interacted with the intraflagellar transport (IFT) machinery in HEK293T cells. This interaction disappeared when 2 human LCA-associated lebercilin mutations were introduced, implicating a specific disruption of IFT-dependent protein transport, an evolutionarily conserved basic mechanism found in all cilia. Lca5 inactivation in mice led to partial displacement of opsins and light-induced translocation of arrestin from photoreceptor outer segments. This was consistent with a defect in IFT at the connecting cilium, leading to failure of proper outer segment formation and subsequent photoreceptor degeneration. These data suggest that lebercilin functions as an integral element of selective protein transport through photoreceptor cilia and provide a molecular demonstration that disrupted IFT can lead to LCA. PMID:21606596

  14. Why motor proteins team up - Intraflagellar transport in C. elegans cilia.

    PubMed

    Mijalkovic, Jona; Prevo, Bram; Peterman, Erwin J G

    2016-01-01

    Inside the cell, vital processes such as cell division and intracellular transport are driven by the concerted action of different molecular motor proteins. In C. elegans chemosensory cilia, 2 kinesin-2 family motor proteins, kinesin-II and OSM-3, team up to drive intraflagellar transport (IFT) in the anterograde direction, from base to tip, whereas IFT dynein hitchhikes toward the tip and subsequently drives IFT in the opposite, retrograde direction, thereby recycling both kinesins. While it is evident that at least a retrograde and an anterograde motor are necessary to drive IFT, it has remained puzzling why 2 same-polarity kinesins are employed. Recently, we addressed this question by combining advanced genome-engineering tools with ultrasensitive, quantitative fluorescence microscopy to study IFT with single-molecule sensitivity.(1,2) Using this combination of approaches, we uncovered a differentiation in kinesin-2 function, in which the slower kinesin-II operates as an 'importer', loading IFT trains into the cilium before gradually handing them over to the faster OSM-3. OSM-3 subsequently acts as a long-range 'transporter', driving the IFT trains toward the tip. The two kinesin-2 motors combine their unique motility properties to achieve something neither motor can achieve on its own; that is to optimize the amount of cargo inside the cilium. In this commentary, we provide detailed insight into the rationale behind our research approach and comment on our recent findings. Moreover, we discuss the role of IFT dynein and provide an outlook on future studies.

  15. IFT-81 and IFT-74 are required for intraflagellar transport in C. elegans.

    PubMed

    Kobayashi, Tetsuo; Gengyo-Ando, Keiko; Ishihara, Takeshi; Katsura, Isao; Mitani, Shohei

    2007-05-01

    Intraflagellar transport (IFT) is essential machinery for biogenesis and maintenance of cilia in many eukaryotic and prokaryotic cells. A large number of polypeptides are known to be involved in IFT, but the physiological role of each component is not fully elucidated. Here, we identified a C. elegans orthologue of a Chlamydomonas reinhardtii IFT component, IFT-81, and found that its loss-of-function mutants show an unusual behavioral property and small body size. IFT-81 is expressed in sensory neurons, and localized at the base of cilia. The similar phenotypes with ift-81 mutants were also observed in several IFT mutants, suggesting these defects are caused by inability of IFT. We also demonstrated that IFT-81 interacts and co-localizes with IFT-74, which is another putative component of IFT. The ift-74 loss-of-function mutants showed phenocopies with ift-81 mutants, suggesting IFT-81 and IFT-74 play comparable functions. Moreover, ift-81 and ift-74 mutants similarly exhibited weak anomalies in cilia formation and obvious disruptions of transport in mature cilia. Thus, we conclude that IFT-81 and IFT-74 coordinately act in IFT in C. elegans sensory cilia.

  16. Intraflagellar transport is required for polarized recycling of the TCR/CD3 complex to the immune synapse.

    PubMed

    Finetti, Francesca; Paccani, Silvia Rossi; Riparbelli, Maria Giovanna; Giacomello, Emiliana; Perinetti, Giuseppe; Pazour, Gregory J; Rosenbaum, Joel L; Baldari, Cosima T

    2009-11-01

    Most eukaryotic cells have a primary cilium which functions as a sensory organelle. Cilia are assembled by intraflagellar transport (IFT), a process mediated by multimeric IFT particles and molecular motors. Here we show that lymphoid and myeloid cells, which lack primary cilia, express IFT proteins. IFT20, an IFT component essential for ciliary assembly, was found to colocalize with both the microtubule organizing centre (MTOC) and Golgi and post-Golgi compartments in T-lymphocytes. In antigen-specific conjugates, IFT20 translocated to the immune synapse. IFT20 knockdown resulted in impaired T-cell receptor/CD3 (TCR/CD3) clustering and signalling at the immune synapse, due to defective polarized recycling. Moreover, IFT20 was required for the inducible assembly of a complex with other IFT components (IFT57 and IFT88) and the TCR. The results identify IFT20 as a new regulator of immune synapse assembly in T cells and provide the first evidence to implicate IFT in membrane trafficking in cells lacking primary cilia, thereby introducing a new perspective on IFT function beyond its role in ciliogenesis.

  17. Intraflagellar transport is required for polarized recycling of the TCR/CD3 complex to the immune synapse

    PubMed Central

    Finetti, Francesca; Paccani, Silvia Rossi; Riparbelli, Maria Giovanna; Giacomello, Emiliana; Perinetti, Giuseppe; Pazour, Gregory J.; Rosenbaum, Joel; Baldari, Cosima T.

    2010-01-01

    Most eukaryotic cells have a primary cilium which acts as a sensory organelle1. Cilia are assembled by intraflagellar transport (IFT), a process mediated by multimeric IFT particles and molecular motors2. Here we show that lymphoid and myeloid cells, which lack primary cilia, express IFT proteins. IFT20, an IFT component essential for ciliary assembly3,4, was found to colocalize with both the MTOC and Golgi and post-Golgi compartments in T-lymphocytes. In antigen-specific conjugates, IFT20 translocated to the immune synapse (IS). IFT20 knockdown resulted in impaired TCR/CD3 clustering and signaling at the IS due to defective polarized recycling. Moreover, IFT20 was required for the inducible assembly of a complex with other IFT components (IFT57, IFT88) and the TCR. The results identify IFT20 as a novel regulator of IS assembly in T-cells and provide the first evidence that IFT is implicated in membrane trafficking in cells lacking primary cilia, thereby opening a new perspective on IFT function beyond its role in ciliogenesis. PMID:19855387

  18. KDM3A coordinates actin dynamics with intraflagellar transport to regulate cilia stability

    PubMed Central

    Schiller, Rachel; Kawamura, Akane; Gilbert, Nick; Wills, Jimi; von Kriegsheim, Alex

    2017-01-01

    Cilia assembly and disassembly are coupled to actin dynamics, ensuring a coherent cellular response during environmental change. How these processes are integrated remains undefined. The histone lysine demethylase KDM3A plays important roles in organismal homeostasis. Loss-of-function mouse models of Kdm3a phenocopy features associated with human ciliopathies, whereas human somatic mutations correlate with poor cancer prognosis. We demonstrate that absence of KDM3A facilitates ciliogenesis, but these resulting cilia have an abnormally wide range of axonemal lengths, delaying disassembly and accumulating intraflagellar transport (IFT) proteins. KDM3A plays a dual role by regulating actin gene expression and binding to the actin cytoskeleton, creating a responsive “actin gate” that involves ARP2/3 activity and IFT. Promoting actin filament formation rescues KDM3A mutant ciliary defects. Conversely, the simultaneous depolymerization of actin networks and IFT overexpression mimics the abnormal ciliary traits of KDM3A mutants. KDM3A is thus a negative regulator of ciliogenesis required for the controlled recruitment of IFT proteins into cilia through the modulation of actin dynamics. PMID:28246120

  19. Specific recycling receptors are targeted to the immune synapse by the intraflagellar transport system.

    PubMed

    Finetti, Francesca; Patrussi, Laura; Masi, Giulia; Onnis, Anna; Galgano, Donatella; Lucherini, Orso Maria; Pazour, Gregory J; Baldari, Cosima T

    2014-05-01

    T cell activation requires sustained signaling at the immune synapse, a specialized interface with the antigen-presenting cell (APC) that assembles following T cell antigen receptor (TCR) engagement by major histocompatibility complex (MHC)-bound peptide. Central to sustained signaling is the continuous recruitment of TCRs to the immune synapse. These TCRs are partly mobilized from an endosomal pool by polarized recycling. We have identified IFT20, a component of the intraflagellar transport (IFT) system that controls ciliogenesis, as a central regulator of TCR recycling to the immune synapse. Here, we have investigated the interplay of IFT20 with the Rab GTPase network that controls recycling. We found that IFT20 forms a complex with Rab5 and the TCR on early endosomes. IFT20 knockdown (IFT20KD) resulted in a block in the recycling pathway, leading to a build-up of recycling TCRs in Rab5(+) endosomes. Recycling of the transferrin receptor (TfR), but not of CXCR4, was disrupted by IFT20 deficiency. The IFT components IFT52 and IFT57 were found to act together with IFT20 to regulate TCR and TfR recycling. The results provide novel insights into the mechanisms that control TCR recycling and immune synapse assembly, and underscore the trafficking-related function of the IFT system beyond ciliogenesis.

  20. Specific recycling receptors are targeted to the immune synapse by the intraflagellar transport system

    PubMed Central

    Finetti, Francesca; Patrussi, Laura; Masi, Giulia; Onnis, Anna; Galgano, Donatella; Lucherini, Orso Maria; Pazour, Gregory J.; Baldari, Cosima T.

    2014-01-01

    ABSTRACT T cell activation requires sustained signaling at the immune synapse, a specialized interface with the antigen-presenting cell (APC) that assembles following T cell antigen receptor (TCR) engagement by major histocompatibility complex (MHC)-bound peptide. Central to sustained signaling is the continuous recruitment of TCRs to the immune synapse. These TCRs are partly mobilized from an endosomal pool by polarized recycling. We have identified IFT20, a component of the intraflagellar transport (IFT) system that controls ciliogenesis, as a central regulator of TCR recycling to the immune synapse. Here, we have investigated the interplay of IFT20 with the Rab GTPase network that controls recycling. We found that IFT20 forms a complex with Rab5 and the TCR on early endosomes. IFT20 knockdown (IFT20KD) resulted in a block in the recycling pathway, leading to a build-up of recycling TCRs in Rab5+ endosomes. Recycling of the transferrin receptor (TfR), but not of CXCR4, was disrupted by IFT20 deficiency. The IFT components IFT52 and IFT57 were found to act together with IFT20 to regulate TCR and TfR recycling. The results provide novel insights into the mechanisms that control TCR recycling and immune synapse assembly, and underscore the trafficking-related function of the IFT system beyond ciliogenesis. PMID:24554435

  1. Intraflagellar transport is required for the maintenance of the trypanosome flagellum composition but not its length.

    PubMed

    Fort, Cécile; Bonnefoy, Serge; Kohl, Linda; Bastin, Philippe

    2016-08-01

    Intraflagellar transport (IFT) is required for construction of most cilia and flagella. Here, we used electron microscopy, immunofluorescence and live video microscopy to show that IFT is absent or arrested in the mature flagellum of Trypanosoma brucei upon RNA interference (RNAi)-mediated knockdown of IFT88 and IFT140, respectively. Flagella assembled prior to RNAi did not shorten, showing that IFT is not essential for the maintenance of flagella length. Although the ultrastructure of the axoneme was not visibly affected, flagellar beating was strongly reduced and the distribution of several flagellar components was drastically modified. The R subunit of the protein kinase A was no longer concentrated in the flagellum but was largely found in the cell body whereas the kinesin 9B motor was accumulating at the distal tip of the flagellum. In contrast, the distal tip protein FLAM8 was dispersed along the flagellum. This reveals that IFT also functions in maintaining the distribution of some flagellar proteins after construction of the organelle is completed. © 2016. Published by The Company of Biologists Ltd.

  2. KDM3A coordinates actin dynamics with intraflagellar transport to regulate cilia stability.

    PubMed

    Yeyati, Patricia L; Schiller, Rachel; Mali, Girish; Kasioulis, Ioannis; Kawamura, Akane; Adams, Ian R; Playfoot, Christopher; Gilbert, Nick; van Heyningen, Veronica; Wills, Jimi; von Kriegsheim, Alex; Finch, Andrew; Sakai, Juro; Schofield, Christopher J; Jackson, Ian J; Mill, Pleasantine

    2017-02-28

    Cilia assembly and disassembly are coupled to actin dynamics, ensuring a coherent cellular response during environmental change. How these processes are integrated remains undefined. The histone lysine demethylase KDM3A plays important roles in organismal homeostasis. Loss-of-function mouse models of Kdm3a phenocopy features associated with human ciliopathies, whereas human somatic mutations correlate with poor cancer prognosis. We demonstrate that absence of KDM3A facilitates ciliogenesis, but these resulting cilia have an abnormally wide range of axonemal lengths, delaying disassembly and accumulating intraflagellar transport (IFT) proteins. KDM3A plays a dual role by regulating actin gene expression and binding to the actin cytoskeleton, creating a responsive "actin gate" that involves ARP2/3 activity and IFT. Promoting actin filament formation rescues KDM3A mutant ciliary defects. Conversely, the simultaneous depolymerization of actin networks and IFT overexpression mimics the abnormal ciliary traits of KDM3A mutants. KDM3A is thus a negative regulator of ciliogenesis required for the controlled recruitment of IFT proteins into cilia through the modulation of actin dynamics.

  3. WD60/FAP163 is a dynein intermediate chain required for retrograde intraflagellar transport in cilia

    PubMed Central

    Patel-King, Ramila S.; Gilberti, Renée M.; Hom, Erik F. Y.; King, Stephen M.

    2013-01-01

    Retrograde intraflagellar transport (IFT) is required for assembly of cilia. We identify a Chlamydomonas flagellar protein (flagellar-associated protein 163 [FAP163]) as being closely related to the D1bIC(FAP133) intermediate chain (IC) of the dynein that powers this movement. Biochemical analysis revealed that FAP163 is present in the flagellar matrix and is actively trafficked by IFT. Furthermore, FAP163 copurified with D1bIC(FAP133) and the LC8 dynein light chain, indicating that it is an integral component of the retrograde IFT dynein. To assess the functional role of FAP163, we generated an RNA interference knockdown of the orthologous protein (WD60) in planaria. The Smed-wd60(RNAi) animals had a severe ciliary assembly defect that dramatically compromised whole-organism motility. Most cilia were present as short stubs that had accumulated large quantities of IFT particle–like material between the doublet microtubules and the membrane. The few remaining approximately full-length cilia had a chaotic beat with a frequency reduced from 24 to ∼10 Hz. Thus WD60/FAP163 is a dynein IC that is absolutely required for retrograde IFT and ciliary assembly. PMID:23864713

  4. Intraflagellar transport protein IFT20 is essential for male fertility and spermiogenesis in mice

    PubMed Central

    Zhang, Zhengang; Li, Wei; Zhang, Yong; Zhang, Ling; Teves, Maria E.; Liu, Hong; Strauss, Jerome F.; Pazour, Gregory J.; Foster, James A.; Hess, Rex A.; Zhang, Zhibing

    2016-01-01

    Intraflagellar transport (IFT) is a conserved mechanism believed to be essential for the assembly and maintenance of cilia and flagella. However, little is known about its role in mammalian sperm flagella formation. To fill this gap, we disrupted the Ift20 gene in male germ cells. Homozygous mutant mice were infertile, with significantly reduced sperm counts and motility. In addition, abnormally shaped, elongating spermatid heads and bulbous, round spermatids were found in the lumen of the seminiferous tubules. Electron microscopy revealed increased cytoplasmic vesicles, fiber-like structures, abnormal accumulation of mitochondria, and a decrease in mature lysosomes. The few developed sperm had disrupted axonemes, and some retained cytoplasmic lobe components on the flagella. ODF2 and SPAG16L, two sperm flagella proteins, failed to be incorporated into sperm tails of the mutant mice, and in the germ cells, both were assembled into complexes with lighter density in the absence of IFT20. Disrupting IFT20 did not significantly change expression levels of IFT88, a component of the IFT-B complex, and IFT140, a component of the IFT-A complex. Even though the expression level of an autophagy core protein that associates with IFT20, ATG16, was reduced in the testis of the Ift20 mutant mice, expression levels of other major autophagy markers, including LC3 and ubiquitin, were not changed. Our studies suggest that IFT20 is essential for male fertility and spermiogenesis in mice, and its major function is to transport cargo proteins for sperm flagella formation. It also appears to be involved in removing excess cytoplasmic components. PMID:27682589

  5. Why motor proteins team up - Intraflagellar transport in C. elegans cilia

    PubMed Central

    Mijalkovic, Jona; Prevo, Bram; Peterman, Erwin J. G.

    2016-01-01

    ABSTRACT Inside the cell, vital processes such as cell division and intracellular transport are driven by the concerted action of different molecular motor proteins. In C. elegans chemosensory cilia, 2 kinesin-2 family motor proteins, kinesin-II and OSM-3, team up to drive intraflagellar transport (IFT) in the anterograde direction, from base to tip, whereas IFT dynein hitchhikes toward the tip and subsequently drives IFT in the opposite, retrograde direction, thereby recycling both kinesins. While it is evident that at least a retrograde and an anterograde motor are necessary to drive IFT, it has remained puzzling why 2 same-polarity kinesins are employed. Recently, we addressed this question by combining advanced genome-engineering tools with ultrasensitive, quantitative fluorescence microscopy to study IFT with single-molecule sensitivity.1,2 Using this combination of approaches, we uncovered a differentiation in kinesin-2 function, in which the slower kinesin-II operates as an ‘importer’, loading IFT trains into the cilium before gradually handing them over to the faster OSM-3. OSM-3 subsequently acts as a long-range ‘transporter’, driving the IFT trains toward the tip. The two kinesin-2 motors combine their unique motility properties to achieve something neither motor can achieve on its own; that is to optimize the amount of cargo inside the cilium. In this commentary, we provide detailed insight into the rationale behind our research approach and comment on our recent findings. Moreover, we discuss the role of IFT dynein and provide an outlook on future studies. PMID:27384150

  6. Chibby functions to preserve normal ciliary morphology through the regulation of intraflagellar transport in airway ciliated cells.

    PubMed

    Siller, Saul S; Burke, Michael C; Li, Feng-Qian; Takemaru, Ken-Ichi

    2015-01-01

    Airway cilia provide the coordinated motive force for mucociliary transport, which prevents the accumulation of mucus, debris, pollutants, and bacteria in our respiratory tracts. As airway cilia are constantly exposed to the environment and, hence, are an integral component of the pathogenesis of several congenital and chronic pulmonary disorders, it is necessary to understand the molecular mechanisms that control ciliated cell differentiation and ciliogenesis. We have previously reported that loss of the basal body protein Chibby (Cby) results in chronic upper airway infection in mice due to a significant reduction in the number of airway cilia. In the present work, we demonstrate that Cby is required for normal ciliary structure and proper distribution of proteins involved in the bidirectional intraflagellar transport (IFT) system, which consists of 2 distinct sub-complexes, IFT-A and IFT-B, and is essential for ciliary biogenesis and maintenance. In fully differentiated ciliated cells, abnormal paddle-like cilia with dilated ciliary tips are observed in Cby-/- airways and primary cultures of mouse tracheal epithelial cells (MTECs). In addition, IFT88, an IFT-B sub-complex protein, robustly accumulates within the dilated tips of both multicilia in Cby-/- MTECs and primary cilia in Cby-/- mouse embryonic fibroblasts (MEFs). Furthermore, we show that only IFT-B components, including IFT20 and IFT57, but not IFT-A and Bardet-Biedl syndrome (BBS) proteins, amass with IFT88 in these distended tips in Cby-/- ciliated cells. Taken together, our findings suggest that Cby plays a role in the proper distribution of IFT particles to preserve normal ciliary morphology in airway ciliated cells.

  7. SQL-1, homologue of the Golgi protein GMAP210, modulates intraflagellar transport in C. elegans.

    PubMed

    Broekhuis, Joost R; Rademakers, Suzanne; Burghoorn, Jan; Jansen, Gert

    2013-04-15

    Primary cilia are microtubule-based organelles that have important sensory functions. For their function, cilia rely on the delivery of specific proteins, both by intracellular trafficking and intraflagellar transport (IFT). In the cilia of Caenorhabditis elegans, anterograde IFT is mediated by kinesin-II and OSM-3. Previously, we have shown that expression of a dominant active G protein α subunit (GPA-3QL) in amphid channel neurons affects the coordination of kinesin-II and OSM-3 and also affects cilia length, suggesting that environmental signals can modulate these processes. Here, we show that loss-of-function of sql-1 (suppressor of gpa-3QL 1), which encodes the homologue of the mammalian Golgi protein GMAP210, suppresses the gpa-3QL cilia length phenotype. SQL-1 localizes to the Golgi apparatus, where it contributes to maintaining Golgi organization. Loss of sql-1 by itself does not affect cilia length, whereas overexpression of sql-1 results in longer cilia. Using live imaging of fluorescently tagged IFT proteins, we show that in sql-1 mutants OSM-3 moves faster, kinesin-II moves slower and that some complex A and B proteins move at an intermediate velocity, while others move at the same velocity as OSM-3. This indicates that mutation of sql-1 destabilizes the IFT complex. Finally, we show that simultaneous inactivation of sql-1 and activation of gpa-3QL affects the velocity of OSM-3. In summary, we show that in C. elegans the Golgin protein SQL-1 plays an important role in maintaining the stability of the IFT complex.

  8. Evidence of Intraflagellar Transport and Apical Complex Formation in a Free-Living Relative of the Apicomplexa

    PubMed Central

    Portman, Neil; Foster, Christie; Walker, Giselle

    2014-01-01

    Since its first description, Chromera velia has attracted keen interest as the closest free-living relative of parasitic Apicomplexa. The life cycle of this unicellular alga is complex and involves a motile biflagellate form. Flagella are thought to be formed in the cytoplasm, a rare phenomenon shared with Plasmodium in which the canonical mode of flagellar assembly, intraflagellar transport, is dispensed with. Here we demonstrate the expression of intraflagellar transport components in C. velia, answering the question of whether this organism has the potential to assemble flagella via the canonical route. We have developed and characterized a culturing protocol that favors the generation of flagellate forms. From this, we have determined a marked shift in the mode of daughter cell production from two to four daughter cells per division as a function of time after passage. We conduct an ultrastructural examination of the C. velia flagellate form by using serial TEM and show that flagellar biogenesis in C. velia occurs prior to cytokinesis. We demonstrate a close association of the flagellar apparatus with a complex system of apical structures, including a micropore, a conoid, and a complex endomembrane system reminiscent of the apical complex of parasitic apicomplexans. Recent work has begun to elucidate the possible flagellar origins of the apical complex, and we show that in C. velia these structures are contemporaneous within a single cell and share multiple connections. We propose that C. velia therefore represents a vital piece in the puzzle of the origins of the apical complex. PMID:24058169

  9. Evidence of intraflagellar transport and apical complex formation in a free-living relative of the apicomplexa.

    PubMed

    Portman, Neil; Foster, Christie; Walker, Giselle; Šlapeta, Jan

    2014-01-01

    Since its first description, Chromera velia has attracted keen interest as the closest free-living relative of parasitic Apicomplexa. The life cycle of this unicellular alga is complex and involves a motile biflagellate form. Flagella are thought to be formed in the cytoplasm, a rare phenomenon shared with Plasmodium in which the canonical mode of flagellar assembly, intraflagellar transport, is dispensed with. Here we demonstrate the expression of intraflagellar transport components in C. velia, answering the question of whether this organism has the potential to assemble flagella via the canonical route. We have developed and characterized a culturing protocol that favors the generation of flagellate forms. From this, we have determined a marked shift in the mode of daughter cell production from two to four daughter cells per division as a function of time after passage. We conduct an ultrastructural examination of the C. velia flagellate form by using serial TEM and show that flagellar biogenesis in C. velia occurs prior to cytokinesis. We demonstrate a close association of the flagellar apparatus with a complex system of apical structures, including a micropore, a conoid, and a complex endomembrane system reminiscent of the apical complex of parasitic apicomplexans. Recent work has begun to elucidate the possible flagellar origins of the apical complex, and we show that in C. velia these structures are contemporaneous within a single cell and share multiple connections. We propose that C. velia therefore represents a vital piece in the puzzle of the origins of the apical complex.

  10. The intraflagellar transport dynein complex of trypanosomes is made of a heterodimer of dynein heavy chains and of light and intermediate chains of distinct functions.

    PubMed

    Blisnick, Thierry; Buisson, Johanna; Absalon, Sabrina; Marie, Alexandra; Cayet, Nadège; Bastin, Philippe

    2014-09-01

    Cilia and flagella are assembled by intraflagellar transport (IFT) of protein complexes that bring tubulin and other precursors to the incorporation site at their distal tip. Anterograde transport is driven by kinesin, whereas retrograde transport is ensured by a specific dynein. In the protist Trypanosoma brucei, two distinct genes encode fairly different dynein heavy chains (DHCs; ∼40% identity) termed DHC2.1 and DHC2.2, which form a heterodimer and are both essential for retrograde IFT. The stability of each heavy chain relies on the presence of a dynein light intermediate chain (DLI1; also known as XBX-1/D1bLIC). The presence of both heavy chains and of DLI1 at the base of the flagellum depends on the intermediate dynein chain DIC5 (FAP133/WDR34). In the IFT140(RNAi) mutant, an IFT-A protein essential for retrograde transport, the IFT dynein components are found at high concentration at the flagellar base but fail to penetrate the flagellar compartment. We propose a model by which the IFT dynein particle is assembled in the cytoplasm, reaches the base of the flagellum, and associates with the IFT machinery in a manner dependent on the IFT-A complex.

  11. Intraflagellar transport-A complex mediates ciliary entry and retrograde trafficking of ciliary G protein–coupled receptors

    PubMed Central

    Hirano, Tomoaki; Katoh, Yohei; Nakayama, Kazuhisa

    2017-01-01

    Cilia serve as cellular antennae where proteins involved in sensory and developmental signaling, including G protein–coupled receptors (GPCRs), are specifically localized. Intraflagellar transport (IFT)-A and -B complexes mediate retrograde and anterograde ciliary protein trafficking, respectively. Using a visible immunoprecipitation assay to detect protein–protein interactions, we show that the IFT-A complex is divided into a core subcomplex, composed of IFT122/IFT140/IFT144, which is associated with TULP3, and a peripheral subcomplex, composed of IFT43/IFT121/IFT139, where IFT139 is most distally located. IFT139-knockout (KO) and IFT144-KO cells demonstrated distinct phenotypes: IFT139-KO cells showed the accumulation of IFT-A, IFT-B, and GPCRs, including Smoothened and GPR161, at the bulged ciliary tips; IFT144-KO cells showed failed ciliary entry of IFT-A and GPCRs and IFT-B accumulation at the bulged tips. These observations demonstrate the distinct roles of the core and peripheral IFT-A subunits: IFT139 is dispensable for IFT-A assembly but essential for retrograde trafficking of IFT-A, IFT-B, and GPCRs; in contrast, IFT144 is essential for functional IFT-A assembly and ciliary entry of GPCRs but dispensable for anterograde IFT-B trafficking. Thus the data presented here demonstrate that the IFT-A complex mediates not only retrograde trafficking but also entry into cilia of GPCRs. PMID:27932497

  12. Gli2 and Gli3 Localize to Cilia and Require the Intraflagellar Transport Protein Polaris for Processing and Function

    SciTech Connect

    Michaud III, Edward J; Haycraft, Courtney J; Aydin Son, Yesim; Zhang, Qihong; Yoder, Bradley

    2005-01-01

    Intraflagellar transport (IFT) proteins are essential for cilia assembly and have recently been associated with a number of developmental processes, such as left-right axis specification and limb and neural tube patterning. Genetic studies indicate that IFT proteins are required for Sonic hedgehog (Shh)signaling downstream of the Smoothened and Patched membrane proteins but upstream of the Glioma (Gli) transcription factors. However, the role that IFT proteins play in transduction of Shh signaling and the importance of cilia in this process remain unknown. Here we provide insights into the mechanism by which defects in an IFT protein, Tg737/Polaris, affect Shh signaling in the murine limb bud. Our data show that loss of Tg737 results in altered Gli3 processing that abrogates Gli3-mediated repression of Gli1 transcriptional activity. In contrast to the conclusions drawn from genetic analysis, the activity of Gli1 and truncated forms of Gli3 (Gli3R) are unaffected in Tg737 mutants at the molecular level, indicating that Tg737/Polaris is differentially involved in specific activities of the Gli proteins. Most important, a negative regulator of Shh signaling, Suppressor of fused, and the three full-length Gli transcription factors localize to the distal tip of cilia in addition to the nucleus. Thus, our data support a model where cilia have a direct role in Gli processing and Shh signal transduction.

  13. Pericentrin forms a complex with intraflagellar transport proteins and polycystin-2 and is required for primary cilia assembly

    PubMed Central

    Jurczyk, Agata; Gromley, Adam; Redick, Sambra; Agustin, Jovenal San; Witman, George; Pazour, Gregory J.; Peters, Dorien J.M.; Doxsey, Stephen

    2004-01-01

    Primary cilia are nonmotile microtubule structures that assemble from basal bodies by a process called intraflagellar transport (IFT) and are associated with several human diseases. Here, we show that the centrosome protein pericentrin (Pcnt) colocalizes with IFT proteins to the base of primary and motile cilia. Immunogold electron microscopy demonstrates that Pcnt is on or near basal bodies at the base of cilia. Pcnt depletion by RNA interference disrupts basal body localization of IFT proteins and the cation channel polycystin-2 (PC2), and inhibits primary cilia assembly in human epithelial cells. Conversely, silencing of IFT20 mislocalizes Pcnt from basal bodies and inhibits primary cilia assembly. Pcnt is found in spermatocyte IFT fractions, and IFT proteins are found in isolated centrosome fractions. Pcnt antibodies coimmunoprecipitate IFT proteins and PC2 from several cell lines and tissues. We conclude that Pcnt, IFTs, and PC2 form a complex in vertebrate cells that is required for assembly of primary cilia and possibly motile cilia and flagella. PMID:15337773

  14. Intraflagellar Transport Protein 172 is essential for primary cilia formation and plays a vital role in patterning the mammalian brain

    PubMed Central

    Gorivodsky, Marat; Mukhopadhyay, Mahua; Wilsch-Braeuninger, Michaela; Phillips, Matthew; Teufel, Andreas; Kim, Changmee; Malik, Nasir; Huttner, Wieland; Westphal, Heiner

    2008-01-01

    IFT172, also known as Selective Lim-domain Binding protein (SLB), is a component of the Intraflagellar Transport (IFT) complex. In order to evaluate the biological role of the Ift172 gene, we generated a loss-of-function mutation in the mouse. The resulting Slb mutant embryos die between E12.5–13.0, and exhibit severe cranio-facial malformations, failure to close the cranial neural tube, holoprosencephaly, heart edema and extensive hemorrhages. Cilia outgrowth in cells of the neuroepithelium is initiated but the axonemes are severely truncated and do not contain visible microtubules. Morphological and molecular analyses revealed a global brain-patterning defect along the dorsal-ventral (DV) and anterior-posterior (AP) axes. We demonstrate that Ift172 gene function is required for early regulation of Fgf8 at the midbrain-hindbrain boundary and maintenance of the isthmic organizer. In addition, Ift172 is required for proper function of the embryonic node, the early embryonic organizer and for formation of the head organizing center (the anterior mesendoderm, or AME). We propose a model suggesting that forebrain and mid-hindbrain growth and AP patterning depends on the early function of Ift172 at gastrulation. Our data suggest that the formation and function of the node and AME in the mouse embryo relies on an indispensable role of Ift172 in cilia morphogenesis and cilia-mediated signaling. PMID:18930042

  15. Compound heterozygous alterations in intraflagellar transport protein CLUAP1 in a child with a novel Joubert and oral–facial–digital overlap syndrome

    PubMed Central

    Johnston, Jennifer J.; Lee, Chanjae; Wentzensen, Ingrid M.; Parisi, Melissa A.; Crenshaw, Molly M.; Sapp, Julie C.; Gross, Jeffrey M.; Wallingford, John B.; Biesecker, Leslie G.

    2017-01-01

    Disruption of normal ciliary function results in a range of diseases collectively referred to as ciliopathies. Here we report a child with a phenotype that overlapped with Joubert, oral–facial–digital, and Pallister–Hall syndromes including brain, limb, and craniofacial anomalies. We performed exome-sequence analysis on a proband and both parents, filtered for putative causative variants, and Sanger-verified variants of interest. Identified variants in CLUAP1 were functionally analyzed in a Xenopus system to determine their effect on ciliary function. Two variants in CLUAP1 were identified through exome-sequence analysis, Chr16:g.3558407T>G, c.338T>G, p.(Met113Arg) and Chr16:g.3570011C>T, c.688C>T, p.(Arg230Ter). These variants were rare in the Exome Aggregation Consortium (ExAC) data set of 65,000 individuals (one and two occurrences, respectively). Transfection of mutant CLUAP1 constructs into Xenopus embryos showed reduced protein levels p.(Arg230Ter) and reduced intraflagellar transport p.(Met113Arg). The genetic data show that these variants are present in an affected child, are rare in the population, and result in reduced, but not absent, intraflagellar transport. We conclude that biallelic mutations in CLUAP1 resulted in this novel ciliopathy syndrome in the proband. PMID:28679688

  16. An essential quality control mechanism at the eukaryotic basal body prior to intraflagellar transport.

    PubMed

    Stephan, Angela; Vaughan, Sue; Shaw, Michael K; Gull, Keith; McKean, Paul G

    2007-10-01

    Constructing a eukaryotic cilium/flagellum is a demanding task requiring the transport of proteins from their cytoplasmic synthesis site into a spatially and environmentally distinct cellular compartment. The clear potential hazard is that import of aberrant proteins could seriously disable cilia/flagella assembly or turnover processes. Here, we reveal that tubulin protein destined for incorporation into axonemal microtubules interacts with a tubulin cofactor C (TBCC) domain-containing protein that is specifically located at the mature basal body transitional fibres. RNA interference-mediated ablation of this protein results in axonemal microtubule defects but no effect on other microtubule populations within the cell. Bioinformatics analysis indicates that this protein belongs to a clade of flagellum-specific TBCC-like proteins that includes the human protein, XRP2, mutations which lead to certain forms of the hereditary eye disease retinitis pigmentosa. Taken with other observations regarding the role of transitional fibres in cilium/flagellum assembly, we suggest that a localized protein processing capacity embedded at transitional fibres ensures the 'quality' of tubulin imported into the cilium/flagellum, and further, that loss of a ciliary/flagellar quality control capability may underpin a number of human genetic disorders.

  17. Loss of ift122, a Retrograde Intraflagellar Transport (IFT) Complex Component, Leads to Slow, Progressive Photoreceptor Degeneration Due to Inefficient Opsin Transport.

    PubMed

    Boubakri, Meriam; Chaya, Taro; Hirata, Hiromi; Kajimura, Naoko; Kuwahara, Ryusuke; Ueno, Akiko; Malicki, Jarema; Furukawa, Takahisa; Omori, Yoshihiro

    2016-11-18

    In the retina, aberrant opsin transport from cell bodies to outer segments leads to retinal degenerative diseases such as retinitis pigmentosa. Opsin transport is facilitated by the intraflagellar transport (IFT) system that mediates the bidirectional movement of proteins within cilia. In contrast to functions of the anterograde transport executed by IFT complex B (IFT-B), the precise functions of the retrograde transport mediated by IFT complex A (IFT-A) have not been well studied in photoreceptor cilia. Here, we analyzed developing zebrafish larvae carrying a null mutation in ift122 encoding a component of IFT-A. ift122 mutant larvae show unexpectedly mild phenotypes, compared with those of mutants defective in IFT-B. ift122 mutants exhibit a slow onset of progressive photoreceptor degeneration mainly after 7 days post-fertilization. ift122 mutant larvae also develop cystic kidney but not curly body, both of which are typically observed in various ciliary mutants. ift122 mutants display a loss of cilia in the inner ear hair cells and nasal pit epithelia. Loss of ift122 causes disorganization of outer segment discs. Ectopic accumulation of an IFT-B component, ift88, is observed in the ift122 mutant photoreceptor cilia. In addition, pulse-chase experiments using GFP-opsin fusion proteins revealed that ift122 is required for the efficient transport of opsin and the distal elongation of outer segments. These results show that IFT-A is essential for the efficient transport of outer segment proteins, including opsin, and for the survival of retinal photoreceptor cells, rendering the ift122 mutant a unique model for human retinal degenerative diseases. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  18. Intraflagellar transport velocity is governed by the number of active KIF17 and KIF3AB motors and their motility properties under load.

    PubMed

    Milic, Bojan; Andreasson, Johan O L; Hogan, Daniel W; Block, Steven M

    2017-08-15

    Homodimeric KIF17 and heterotrimeric KIF3AB are processive, kinesin-2 family motors that act jointly to carry out anterograde intraflagellar transport (IFT), ferrying cargo along microtubules (MTs) toward the tips of cilia. How IFT trains attain speeds that exceed the unloaded rate of the slower, KIF3AB motor remains unknown. By characterizing the motility properties of kinesin-2 motors as a function of load we find that the increase in KIF3AB velocity, elicited by forward loads from KIF17 motors, cannot alone account for the speed of IFT trains in vivo. Instead, higher IFT velocities arise from an increased likelihood that KIF3AB motors dissociate from the MT, resulting in transport by KIF17 motors alone, unencumbered by opposition from KIF3AB. The rate of transport is therefore set by an equilibrium between a faster state, where only KIF17 motors move the train, and a slower state, where at least one KIF3AB motor on the train remains active in transport. The more frequently the faster state is accessed, the higher the overall velocity of the IFT train. We conclude that IFT velocity is governed by (i) the absolute numbers of each motor type on a given train, (ii) how prone KIF3AB is to dissociation from MTs relative to KIF17, and (iii) how prone both motors are to dissociation relative to binding MTs.

  19. Biochemical mapping of interactions within the intraflagellar transport (IFT) B core complex: IFT52 binds directly to four other IFT-B subunits.

    PubMed

    Taschner, Michael; Bhogaraju, Sagar; Vetter, Melanie; Morawetz, Michaela; Lorentzen, Esben

    2011-07-29

    Cilia and flagella are complex structures emanating from the surface of most eukaroytic cells and serve important functions including motility, signaling, and sensory reception. A process called intraflagellar transport (IFT) is of central importance to ciliary assembly and maintenance. The IFT complex is required for this transport and consists of two distinct multisubunit subcomplexes, IFT-A and IFT-B. Despite the importance of the IFT complex, little is known about its overall architecture. This paper presents a biochemical dissection of the molecular interactions within the IFT-B core complex. Two stable subcomplexes consisting of IFT88/70/52/46 and IFT81/74/27/25 were recombinantly co-expressed and purified. We identify a novel interaction between IFT70/52 and map the interaction domains between IFT52 and the other subunits within the IFT88/70/52/46 complex. Additionally, we show that IFT52 binds directly to the IFT81/74/27/25 complex, indicating that it could mediate the interaction between the two subcomplexes. Our data lead to an improved architectural map for the IFT-B core complex with new interactions as well as domain resolution mapping for several subunits.

  20. Overall Architecture of the Intraflagellar Transport (IFT)-B Complex Containing Cluap1/IFT38 as an Essential Component of the IFT-B Peripheral Subcomplex.

    PubMed

    Katoh, Yohei; Terada, Masaya; Nishijima, Yuya; Takei, Ryota; Nozaki, Shohei; Hamada, Hiroshi; Nakayama, Kazuhisa

    2016-05-20

    Intraflagellar transport (IFT) is essential for assembly and maintenance of cilia and flagella as well as ciliary motility and signaling. IFT is mediated by multisubunit complexes, including IFT-A, IFT-B, and the BBSome, in concert with kinesin and dynein motors. Under high salt conditions, purified IFT-B complex dissociates into a core subcomplex composed of at least nine subunits and at least five peripherally associated proteins. Using the visible immunoprecipitation assay, which we recently developed as a convenient protein-protein interaction assay, we determined the overall architecture of the IFT-B complex, which can be divided into core and peripheral subcomplexes composed of 10 and 6 subunits, respectively. In particular, we identified TTC26/IFT56 and Cluap1/IFT38, neither of which was included with certainty in previous models of the IFT-B complex, as integral components of the core and peripheral subcomplexes, respectively. Consistent with this, a ciliogenesis defect of Cluap1-deficient mouse embryonic fibroblasts was rescued by exogenous expression of wild-type Cluap1 but not by mutant Cluap1 lacking the binding ability to other IFT-B components. The detailed interaction map as well as comparison of subcellular localization of IFT-B components between wild-type and Cluap1-deficient cells provides insights into the functional relevance of the architecture of the IFT-B complex. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  1. Crystal structures of IFT70/52 and IFT52/46 provide insight into intraflagellar transport B core complex assembly

    PubMed Central

    Taschner, Michael; Kotsis, Fruzsina; Braeuer, Philipp; Kuehn, E. Wolfgang

    2014-01-01

    Cilia are microtubule-based organelles that assemble via intraflagellar transport (IFT) and function as signaling hubs on eukaryotic cells. IFT relies on molecular motors and IFT complexes that mediate the contacts with ciliary cargo. To elucidate the architecture of the IFT-B complex, we reconstituted and purified the nonameric IFT-B core from Chlamydomonas reinhardtii and determined the crystal structures of C. reinhardtii IFT70/52 and Tetrahymena IFT52/46 subcomplexes. The 2.5-Å resolution IFT70/52 structure shows that IFT52330–370 is buried deeply within the IFT70 tetratricopeptide repeat superhelix. Furthermore, the polycystic kidney disease protein IFT88 binds IFT52281–329 in a complex that interacts directly with IFT70/IFT52330–381 in trans. The structure of IFT52C/IFT46C was solved at 2.3 Å resolution, and we show that it is essential for IFT-B core integrity by mediating interaction between IFT88/70/52/46 and IFT81/74/27/25/22 subcomplexes. Consistent with this, overexpression of mammalian IFT52C in MDCK cells is dominant-negative and causes IFT protein mislocalization and disrupted ciliogenesis. These data further rationalize several ciliogenesis phenotypes of IFT mutant strains. PMID:25349261

  2. Intraflagellar transport proteins 172, 80, 57, 54, 38, and 20 form a stable tubulin-binding IFT-B2 complex.

    PubMed

    Taschner, Michael; Weber, Kristina; Mourão, André; Vetter, Melanie; Awasthi, Mayanka; Stiegler, Marc; Bhogaraju, Sagar; Lorentzen, Esben

    2016-04-01

    Intraflagellar transport (IFT) relies on the IFT complex and is required for ciliogenesis. The IFT-B complex consists of 9-10 stably associated core subunits and six "peripheral" subunits that were shown to dissociate from the core structure at moderate salt concentration. We purified the six "peripheral"IFT-B subunits of Chlamydomonas reinhardtiias recombinant proteins and show that they form a stable complex independently of the IFT-B core. We suggest a nomenclature of IFT-B1 (core) and IFT-B2 (peripheral) for the two IFT-B subcomplexes. We demonstrate that IFT88, together with the N-terminal domain of IFT52, is necessary to bridge the interaction between IFT-B1 and B2. The crystal structure of IFT52N reveals highly conserved residues critical for IFT-B1/IFT-B2 complex formation. Furthermore, we show that of the three IFT-B2 subunits containing a calponin homology (CH) domain (IFT38, 54, and 57), only IFT54 binds αβ-tubulin as a potential IFT cargo, whereas the CH domains of IFT38 and IFT57 mediate the interaction with IFT80 and IFT172, respectively. Crystal structures of IFT54 CH domains reveal that tubulin binding is mediated by basic surface-exposed residues.

  3. Knockdown of the intraflagellar transport protein IFT46 stimulates selective gene expression in mouse chondrocytes and affects early development in zebrafish.

    PubMed

    Gouttenoire, Jérôme; Valcourt, Ulrich; Bougault, Carole; Aubert-Foucher, Elisabeth; Arnaud, Estelle; Giraud, Lionel; Mallein-Gerin, Frédéric

    2007-10-19

    Bone morphogenetic proteins (BMPs) act as multifunctional regulators in morphogenesis during development. In particular they play a determinant role in the formation of cartilage molds and their replacement by bone during endochondral ossification. In cell culture, BMP-2 favors chondrogenic expression and promotes hypertrophic maturation of chondrocytes. In mouse chondrocytes we have identified a BMP-2-sensitive gene encoding a protein of 301 amino acids. This protein, named mIFT46, is the mouse ortholog of recently identified Caenorhabditis elegans and Chlamydomonas reinhardtii intraflagellar transport (IFT) proteins. After generation of a polyclonal antibody against mIFT46, we showed for the first time that the endogenous protein is located in the primary cilium of chondrocytes. We also found that mIFT46 is preferentially expressed in early hypertrophic chondrocytes located in the growth plate. Additionally, mIFT46 knockdown by small interfering RNA oligonucleotides in cultured chondrocytes specifically stimulated the expression of several genes related to skeletogenesis. Furthermore, Northern blotting analysis indicated that mIFT46 is also expressed before chondrogenesis in embryonic mouse development, suggesting that the role of mIFT46 might not be restricted to cartilage. To explore the role of IFT46 during early development, we injected antisense morpholino oligonucleotides in Danio rerio embryos to reduce zebrafish IFT46 protein (zIFT46) synthesis. Dramatic defects in embryonic development such as a dorsalization and a tail duplication were observed. Thus our results taken together indicate that the ciliary protein IFT46 has a specific function in chondrocytes and is also essential for normal development of vertebrates.

  4. Whole-Organism Developmental Expression Profiling Identifies RAB-28 as a Novel Ciliary GTPase Associated with the BBSome and Intraflagellar Transport

    PubMed Central

    Sanders, Anna A. W. M.; Li, Chunmei; Kennedy, Julie; Cai, Jerry; Scheidel, Noemie; Kennedy, Breandán N.; Morin, Ryan D.; Leroux, Michel R.; Blacque, Oliver E.

    2016-01-01

    Primary cilia are specialised sensory and developmental signalling devices extending from the surface of most eukaryotic cells. Defects in these organelles cause inherited human disorders (ciliopathies) such as retinitis pigmentosa and Bardet-Biedl syndrome (BBS), frequently affecting many physiological and developmental processes across multiple organs. Cilium formation, maintenance and function depend on intracellular transport systems such as intraflagellar transport (IFT), which is driven by kinesin-2 and IFT-dynein motors and regulated by the Bardet-Biedl syndrome (BBS) cargo-adaptor protein complex, or BBSome. To identify new cilium-associated genes, we employed the nematode C. elegans, where ciliogenesis occurs within a short timespan during late embryogenesis when most sensory neurons differentiate. Using whole-organism RNA-Seq libraries, we discovered a signature expression profile highly enriched for transcripts of known ciliary proteins, including FAM-161 (FAM161A orthologue), CCDC-104 (CCDC104), and RPI-1 (RP1/RP1L1), which we confirm are cilium-localised in worms. From a list of 185 candidate ciliary genes, we uncover orthologues of human MAP9, YAP, CCDC149, and RAB28 as conserved cilium-associated components. Further analyses of C. elegans RAB-28, recently associated with autosomal-recessive cone-rod dystrophy, reveal that this small GTPase is exclusively expressed in ciliated neurons where it dynamically associates with IFT trains. Whereas inactive GDP-bound RAB-28 displays no IFT movement and diffuse localisation, GTP-bound (activated) RAB-28 concentrates at the periciliary membrane in a BBSome-dependent manner and undergoes bidirectional IFT. Functional analyses reveal that whilst cilium structure, sensory function and IFT are seemingly normal in a rab-28 null allele, overexpression of predicted GDP or GTP locked variants of RAB-28 perturbs cilium and sensory pore morphogenesis and function. Collectively, our findings present a new approach for

  5. Whole-Organism Developmental Expression Profiling Identifies RAB-28 as a Novel Ciliary GTPase Associated with the BBSome and Intraflagellar Transport.

    PubMed

    Jensen, Victor L; Carter, Stephen; Sanders, Anna A W M; Li, Chunmei; Kennedy, Julie; Timbers, Tiffany A; Cai, Jerry; Scheidel, Noemie; Kennedy, Breandán N; Morin, Ryan D; Leroux, Michel R; Blacque, Oliver E

    2016-12-01

    Primary cilia are specialised sensory and developmental signalling devices extending from the surface of most eukaryotic cells. Defects in these organelles cause inherited human disorders (ciliopathies) such as retinitis pigmentosa and Bardet-Biedl syndrome (BBS), frequently affecting many physiological and developmental processes across multiple organs. Cilium formation, maintenance and function depend on intracellular transport systems such as intraflagellar transport (IFT), which is driven by kinesin-2 and IFT-dynein motors and regulated by the Bardet-Biedl syndrome (BBS) cargo-adaptor protein complex, or BBSome. To identify new cilium-associated genes, we employed the nematode C. elegans, where ciliogenesis occurs within a short timespan during late embryogenesis when most sensory neurons differentiate. Using whole-organism RNA-Seq libraries, we discovered a signature expression profile highly enriched for transcripts of known ciliary proteins, including FAM-161 (FAM161A orthologue), CCDC-104 (CCDC104), and RPI-1 (RP1/RP1L1), which we confirm are cilium-localised in worms. From a list of 185 candidate ciliary genes, we uncover orthologues of human MAP9, YAP, CCDC149, and RAB28 as conserved cilium-associated components. Further analyses of C. elegans RAB-28, recently associated with autosomal-recessive cone-rod dystrophy, reveal that this small GTPase is exclusively expressed in ciliated neurons where it dynamically associates with IFT trains. Whereas inactive GDP-bound RAB-28 displays no IFT movement and diffuse localisation, GTP-bound (activated) RAB-28 concentrates at the periciliary membrane in a BBSome-dependent manner and undergoes bidirectional IFT. Functional analyses reveal that whilst cilium structure, sensory function and IFT are seemingly normal in a rab-28 null allele, overexpression of predicted GDP or GTP locked variants of RAB-28 perturbs cilium and sensory pore morphogenesis and function. Collectively, our findings present a new approach for

  6. A novel bicistronic expression system composed of the intraflagellar transport protein gene ift25 and FMDV 2A sequence directs robust nuclear gene expression in Chlamydomonas reinhardtii.

    PubMed

    Dong, Bin; Hu, He-He; Li, Zhen-Fang; Cheng, Rong-Qiang; Meng, De-Mei; Wang, Junping; Fan, Zhen-Chuan

    2017-02-25

    Chlamydomonas reinhardtii offers a great promise for large-scale production of multiple recombinant proteins of pharmaceutical and industrial interest. However, the nuclear-encoding transgenes usually are expressed at a low level, which severely hampers the use of this alga in molecular farming. In this study, the promoter of the endogenous intraflagellar transport 25 (IFT25) gene of C. reinhardtii was tested for its ability to drive the expression of green fluorescent protein (GFP), which functions as a readout for target gene expression. IFT25 promoter (IFT25P) alone was not able to drive GFP expression to a detectable level. IFT25P, however, can drive robust IFT25-GFP fusion protein expression when the intron-containing IFT25 gene was inserted between IFT25P and GFP cDNA. When an extended version of foot-and-mouth virus 2A protease (2A(E)) sequence was further inserted between the intron-containing IFT25 gene and the GFP cDNA, discrete GFP protein was observed to release from the IFT25-2A(E)-GFP polyprotein via 2A self-cleaving with a cleavage efficacy of approximately 99%. The monomer GFP was accumulated to a level of as high as 0.68% of total soluble proteins. To test whether the newly developed bicistronic IFT25P-IFT25-2A(E) expression system can be used to overexpress heterologous proteins of different origins and sizes, we inserted codon-optimized cDNAs encoding a Trichoderma reesei xylanase1 (25 kDa) and a Lachnospiraceae bacterium ND2006 type V CRISPR-Cas protein LbCpf1 (147 kDa) to the vector and found that the production of xylanase1 and LbCpf1 was as high as 0.69 and 0.49% of total soluble protein. Our result showed that IFT25P-IFT25-2A(E) system is more efficient to drive nuclear gene expression in C. reinhardtii than other conventionally used promoters, thus representing a novel efficient recombinant protein expression tool and has the potential to be scaled for commercial production of nuclear-encoded recombinant proteins of different sizes and

  7. RAB-Like 2 Has an Essential Role in Male Fertility, Sperm Intra-Flagellar Transport, and Tail Assembly

    PubMed Central

    Lo, Jennifer C. Y.; Jamsai, Duangporn; O'Connor, Anne E.; Borg, Claire; Clark, Brett J.; Whisstock, James C.; Field, Mark C.; Adams, Vicki; Ishikawa, Tomomoto; Aitken, R. John; Whittle, Belinda; Goodnow, Christopher C.; Ormandy, Christopher J.; O'Bryan, Moira K.

    2012-01-01

    A significant percentage of young men are infertile and, for the majority, the underlying cause remains unknown. Male infertility is, however, frequently associated with defective sperm motility, wherein the sperm tail is a modified flagella/cilia. Conversely, a greater understanding of essential mechanisms involved in tail formation may offer contraceptive opportunities, or more broadly, therapeutic strategies for global cilia defects. Here we have identified Rab-like 2 (RABL2) as an essential requirement for sperm tail assembly and function. RABL2 is a member of a poorly characterized clade of the RAS GTPase superfamily. RABL2 is highly enriched within developing male germ cells, where it localizes to the mid-piece of the sperm tail. Lesser amounts of Rabl2 mRNA were observed in other tissues containing motile cilia. Using a co-immunoprecipitation approach and RABL2 affinity columns followed by immunochemistry, we demonstrated that within developing haploid germ cells RABL2 interacts with intra-flagella transport (IFT) proteins and delivers a specific set of effector (cargo) proteins, including key members of the glycolytic pathway, to the sperm tail. RABL2 binding to effector proteins is regulated by GTP. Perturbed RABL2 function, as exemplified by the Mot mouse line that contains a mutation in a critical protein–protein interaction domain, results in male sterility characterized by reduced sperm output, and sperm with aberrant motility and short tails. Our data demonstrate a novel function for the RABL protein family, an essential role for RABL2 in male fertility and a previously uncharacterised mechanism for protein delivery to the flagellum. PMID:23055941

  8. Nephrocystins and MKS proteins interact with IFT particle and facilitate transport of selected ciliary cargos.

    PubMed

    Zhao, Chengtian; Malicki, Jarema

    2011-05-20

    Cilia are required for the development and function of many organs. Efficient transport of protein cargo along ciliary axoneme is necessary to sustain these processes. Despite its importance, the mode of interaction between the intraflagellar ciliary transport (IFT) mechanism and its cargo proteins remains poorly understood. Our studies demonstrate that IFT particle components, and a Meckel-Gruber syndrome 1 (MKS1)-related, B9 domain protein, B9d2, bind each other and contribute to the ciliary localization of Inversin (Nephrocystin 2). B9d2, Inversin, and Nephrocystin 5 support, in turn, the transport of a cargo protein, Opsin, but not another photoreceptor ciliary transmembrane protein, Peripherin. Interestingly, the components of this mechanism also contribute to the formation of planar cell polarity in mechanosensory epithelia. These studies reveal a molecular mechanism that mediates the transport of selected ciliary cargos and is of fundamental importance for the differentiation and survival of sensory cells.

  9. Summary of Alpha Particle Transport

    SciTech Connect

    Medley, S.S.; White, R.B.; Zweben, S.J.

    1998-08-19

    This paper summarizes the talks on alpha particle transport which were presented at the 5th International Atomic Energy Agency's Technical Committee Meeting on "Alpha Particles in Fusion Research" held at the Joint European Torus, England in September 1997.

  10. Ordered transport and identification of particles

    DOEpatents

    Shera, E.B.

    1993-05-11

    A method and apparatus are provided for application of electrical field gradients to induce particle velocities to enable particle sequence and identification information to be obtained. Particle sequence is maintained by providing electroosmotic flow for an electrolytic solution in a particle transport tube. The transport tube and electrolytic solution are selected to provide an electroosmotic radius of >100 so that a plug flow profile is obtained for the electrolytic solution in the transport tube. Thus, particles are maintained in the same order in which they are introduced in the transport tube. When the particles also have known electrophoretic velocities, the field gradients introduce an electrophoretic velocity component onto the electroosmotic velocity. The time that the particles pass selected locations along the transport tube may then be detected and the electrophoretic velocity component calculated for particle identification. One particular application is the ordered transport and identification of labeled nucleotides sequentially cleaved from a strand of DNA.

  11. Ordered transport and identification of particles

    DOEpatents

    Shera, E. Brooks

    1993-01-01

    A method and apparatus are provided for application of electrical field gradients to induce particle velocities to enable particle sequence and identification information to be obtained. Particle sequence is maintained by providing electroosmotic flow for an electrolytic solution in a particle transport tube. The transport tube and electrolytic solution are selected to provide an electroosmotic radius of >100 so that a plug flow profile is obtained for the electrolytic solution in the transport tube. Thus, particles are maintained in the same order in which they are introduced in the transport tube. When the particles also have known electrophoretic velocities, the field gradients introduce an electrophoretic velocity component onto the electroosmotic velocity. The time that the particles pass selected locations along the transport tube may then be detected and the electrophoretic velocity component calculated for particle identification. One particular application is the ordered transport and identification of labeled nucleotides sequentially cleaved from a strand of DNA.

  12. Quadrupole Induced Resonant Particle Transport

    NASA Astrophysics Data System (ADS)

    Gilson, Erik; Fajans, Joel

    1999-11-01

    We have performed experiments that explore the effects of a magnetic quadrupole field on a pure electron plasma confined in a Malmberg-Penning trap. A model that we have developed describes the shape of the plasma and shows that a certain class of resonant particles follows trajectories that take them out of the plasma. Even though the quadrupole field destroys the cylindrical symmetry of the system, our theory predicts that if the electrons are off resonance, then the lifetime of the plasma will not be greatly affected by the quadrupole field. Our preliminary experimental results show that the shape of the plasma and the plasma lifetime agree with our model. We are investigating the scaling of this behavior with various experimental parameters such as the plasma length, density, and strength of the quadrupole field. In addition to being an example of resonant particle transport, this effect may find practical applications in experiments that plan to use magnetic quadrupole neutral atom traps to confine anti-hydrogen created in double-well positron/anti-proton Malmberg-Penning traps. (ATHENA Collaboration.)

  13. Quadrupole Induced Resonant Particle Transport

    NASA Astrophysics Data System (ADS)

    Gilson, Erik; Fajans, Joel

    1998-11-01

    We have performed experiments that explore the effects of a magnetic quadrupole field on a pure electron plasma confined in a Penning-Malmberg trap. A model that we have developed describes the shape of the plasma and shows that a certain class of resonant particles follows trajectories that take them out of the plasma. Even though the quadrupole field destroys the cylindrical symmetry of the system, our theory predicts that if the electrons are off resonance, then the lifetime of the plasma will not be greatly affected by the quadrupole field. Our preliminary experimental results show that the shape of the plasma and the plasma lifetime agree with our model. We are investigating the scaling of this behavior with various experimental parameters such as the plasma length, density, and strength of the quadrupole field. In addition to being an example of resonant particle transport, this effect may find practical applications in experiments that plan to use magnetic quadrupole neutral atom traps to confine anti-hydrogen created in double-well positron/anti-proton Penning-Malmberg traps. (ATHENA Collaboration.)

  14. Ratchet transport powered by chiral active particles

    PubMed Central

    Ai, Bao-quan

    2016-01-01

    We numerically investigate the ratchet transport of mixtures of active and passive particles in a transversal asymmetric channel. A big passive particle is immersed in a ‘sea’ of active particles. Due to the chirality of active particles, the longitudinal directed transport is induced by the transversal asymmetry. For the active particles, the chirality completely determines the direction of the ratchet transport, the counterclockwise and clockwise particles move to the opposite directions and can be separated. However, for the passive particle, the transport behavior becomes complicated, the direction is determined by competitions among the chirality, the self-propulsion speed, and the packing fraction. Interestingly, within certain parameters, the passive particle moves to the left, while active particles move to the right. In addition, there exist optimal parameters (the chirality, the height of the barrier, the self-propulsion speed and the packing fraction) at which the rectified efficiency takes its maximal value. Our findings could be used for the experimental pursuit of the ratchet transport powered by chiral active particles. PMID:26795952

  15. Discrete Elements Method of Neutral Particle Transport

    DTIC Science & Technology

    1983-10-01

    0 ,,S" . K A t - "’.* DISCRETE ELEMENTS METHOD NEUTRAL PARTICLE TRANSPORT ..- DISSERTATION AF. IT/DS/PH/83-5 Kirk A. Mathews LCDR USN D~ Approved for...DISCRETE ELEMENTS METHOD OF NEUTRAL PARTICLE TRANSPORT DISSERTATION Presented to the Faculty of the School of Engineering of the Air Force Institute...o .°. .• . r •.- - DS/PH/83-5 DISCRETE ELEMENTS METHOD OF NEUTRAL PARTICLE TRANSPORT 4 "by Kirk A. Mathews LCDR USN Approved: , Charles J

  16. Particle transport in planetary magnetospheres

    SciTech Connect

    Birmingham, T.J.

    1984-11-01

    Particle energization in Earth's and Jupiter's magnetospheres is discussed. Understanding of the large scale magnetic and electric fields in which charged particles move is reviewed. Orbit theory in the adiabatic approximation is sketched. General conditions for adiabatic breakdown at each of three levels of periodicity are presented. High energy losses and lower energy sources argue for the existence of magnetospheric accelerations. Nonadiabatic acceleration processes are mentioned. Slow diffusive energization by particle interactions with electromagnetic fluctuations is outlined. This mechanism seems adequate at Earth but, operating alone, is unconvincing for Jupiter. Adding spatial diffusion in the radially distended Jovian magnetodisk may resolve the difficulty. (ESA)

  17. Particles in Surface Waters: Coagulation and Transport.

    NASA Astrophysics Data System (ADS)

    Culkin, Gerald William

    Conventional water quality assessment and simulation of particles in natural waters focus on bulk concentrations of the suspended solid phase. These analyses rely directly or indirectly on a linear, 'average particle' approach to describe processes that are nonlinear and highly size -dependent. Size-dependent transport and transformation mechanisms were simulated in this research to identify conditions in which coagulation is important. Explicit finite difference schemes for two-dimensional, laterally-averaged, unsteady particle transport were developed to approximate the size -dependent particle transport processes, which included advection, dispersion, and settling. Coupled exchange of discrete particles between the water column and sediment bed was modeled using size-dependent particle sedimentation and resuspension. Simultaneous particle-particle flocculation was integrated over time in parallel with transport. Model simulations of systems with idealized morphometry and forcing provided greater insight to competing processes that drive particle behavior in natural systems. Application of the model to a real system gave plausible results and suggested explanations for observed conditions.

  18. Particle transport in asymmetrically modulated pores

    NASA Astrophysics Data System (ADS)

    Mathwig, Klaus; Müller, Frank; Gösele, Ulrich

    2011-03-01

    Brownian motion plays an important role in the separation of small particles and molecules, but generally leads to undirected motion or intermixing by diffusion. Matthias and Müller (2003 Nature 424 53-7) reported on the experimental realization of a drift ratchet, a microfluidic particle transport mechanism that utilizes random fluctuations instead, i.e. a Brownian motor. Here, we offer a new interpretation of this previously published work on the drift ratchet. New experiments, which allow us to distinguish between particles of different sizes, as well as a re-examination of the original work, lead to the conclusion that the measured particle transport does not result from a ratchet effect. We demonstrate that the transport is caused by convection instead. While our result challenges one specific type of experiment, we do not assess the feasibility of a drift ratchet in principle. Instead, we identify the experimental conditions that need to be fulfilled for the successful separation of particles.

  19. Particle Transport in Parallel-Plate Reactors

    SciTech Connect

    Rader, D.J.; Geller, A.S.

    1999-08-01

    A major cause of semiconductor yield degradation is contaminant particles that deposit on wafers while they reside in processing tools during integrated circuit manufacturing. This report presents numerical models for assessing particle transport and deposition in a parallel-plate geometry characteristic of a wide range of single-wafer processing tools: uniform downward flow exiting a perforated-plate showerhead separated by a gap from a circular wafer resting on a parallel susceptor. Particles are assumed to originate either upstream of the showerhead or from a specified position between the plates. The physical mechanisms controlling particle deposition and transport (inertia, diffusion, fluid drag, and external forces) are reviewed, with an emphasis on conditions encountered in semiconductor process tools (i.e., sub-atmospheric pressures and submicron particles). Isothermal flow is assumed, although small temperature differences are allowed to drive particle thermophoresis. Numerical solutions of the flow field are presented which agree with an analytic, creeping-flow expression for Re < 4. Deposition is quantified by use of a particle collection efficiency, which is defined as the fraction of particles in the reactor that deposit on the wafer. Analytic expressions for collection efficiency are presented for the limiting case where external forces control deposition (i.e., neglecting particle diffusion and inertia). Deposition from simultaneous particle diffusion and external forces is analyzed by an Eulerian formulation; for creeping flow and particles released from a planar trap, the analysis yields an analytic, integral expression for particle deposition based on process and particle properties. Deposition from simultaneous particle inertia and external forces is analyzed by a Lagrangian formulation, which can describe inertia-enhanced deposition resulting from particle acceleration in the showerhead. An approximate analytic expression is derived for particle

  20. Energetic particle transport in relativistic flows

    NASA Technical Reports Server (NTRS)

    Webb, G. M.

    1992-01-01

    A discussion is given of pitch angle dependent and diffusive transport equations for cosmic rays applicable for both special relativistic and general relativistic flows, derived from the relativistic Boltzmann equation. As an example of particle transport in a curved spacetime we give a pitch angle dependent transport equation appropriate for radial accretion onto a Schwarzschild black hole. The roles of fluid shear, acceleration and compression on the energy changes of particles in the diffusive transport equations are emphasized. Also discussed are special flows (e.g. rigidly rotating flows) associated with a Killing vector for which a constant of the motion of the particles can be identified, and for which simplified transport equations can be constructed.

  1. Magnetotail particle dynamics and transport

    NASA Technical Reports Server (NTRS)

    Speiser, Theodore W.

    1995-01-01

    The main thrust of our research is to study the consequences of particle dynamics in the current sheet region of the magnetotail. The importance of understanding particle dynamics, in and near current sheets, cannot be over estimated, especially in light of NASA's recent interest in developing global circulation models to predict space weather. We have embarked on a long-term study to investigate the electrical resistance due to chaotic behavior, compare this resistance to inertial effects, and relate it to that resistance required in MHD modeling for reconnection to proceed. Using a single-particle model and observations, we have also found that a neutral line region can be remotely sensed. We plan to evaluate other cases of satellite observations near times of substorm onset to elucidate the relationship between the temporal development of a near-Earth neutral line and onset.

  2. Particle transport and deposition: basic physics of particle kinetics.

    PubMed

    Tsuda, Akira; Henry, Frank S; Butler, James P

    2013-10-01

    The human body interacts with the environment in many different ways. The lungs interact with the external environment through breathing. The enormously large surface area of the lung with its extremely thin air-blood barrier is exposed to particles suspended in the inhaled air. The particle-lung interaction may cause deleterious effects on health if the inhaled pollutant aerosols are toxic. Conversely, this interaction can be beneficial for disease treatment if the inhaled particles are therapeutic aerosolized drugs. In either case, an accurate estimation of dose and sites of deposition in the respiratory tract is fundamental to understanding subsequent biological response, and the basic physics of particle motion and engineering knowledge needed to understand these subjects is the topic of this article. A large portion of this article deals with three fundamental areas necessary to the understanding of particle transport and deposition in the respiratory tract. These are: (i) the physical characteristics of particles, (ii) particle behavior in gas flow, and (iii) gas-flow patterns in the respiratory tract. Other areas, such as particle transport in the developing lung and in the diseased lung are also considered. The article concludes with a summary and a brief discussion of areas of future research.

  3. Particle transport and deposition: basic physics of particle kinetics

    PubMed Central

    Tsuda, Akira; Henry, Frank S.; Butler, James P.

    2015-01-01

    The human body interacts with the environment in many different ways. The lungs interact with the external environment through breathing. The enormously large surface area of the lung with its extremely thin air-blood barrier is exposed to particles suspended in the inhaled air. Whereas the particle-lung interaction may cause deleterious effects on health if the inhaled pollutant aerosols are toxic, this interaction can be beneficial for disease treatment if the inhaled particles are therapeutic aerosolized drug. In either case, an accurate estimation of dose and sites of deposition in the respiratory tract is fundamental to understanding subsequent biological response, and the basic physics of particle motion and engineering knowledge needed to understand these subjects is the topic of this chapter. A large portion of this chapter deals with three fundamental areas necessary to the understanding of particle transport and deposition in the respiratory tract. These are: 1) the physical characteristics of particles, 2) particle behavior in gas flow, and 3) gas flow patterns in the respiratory tract. Other areas, such as particle transport in the developing lung and in the diseased lung are also considered. The chapter concludes with a summary and a brief discussion of areas of future research. PMID:24265235

  4. Kinetic transport simulation of energetic particles

    NASA Astrophysics Data System (ADS)

    Sheng, He; Waltz, R. E.

    2016-05-01

    A kinetic transport code (EPtran) is developed for the transport of the energetic particles (EPs). The EPtran code evolves the EP distribution function in radius, energy, and pitch angle phase space (r, E, λ) to steady state with classical slowing down, pitch angle scattering, as well as radial and energy transport of the injected EPs (neutral beam injection (NBI) or fusion alpha). The EPtran code is illustrated by treating the transport of NBI fast ions from high-n ITG/TEM micro-turbulence and EP driven unstable low-n Alfvén eigenmodes (AEs) in a well-studied DIII-D NBI heated discharge with significant AE central core loss. The kinetic transport code results for this discharge are compared with previous study using a simple EP density moment transport code ALPHA (R.E. Waltz and E.M. Bass 2014 Nucl. Fusion 54 104006). The dominant EP-AE transport is treated with a local stiff critical EP density (or equivalent pressure) gradient radial transport model modified to include energy-dependence and the nonlocal effects EP drift orbits. All previous EP transport models assume that the EP velocity space distribution function is not significantly distorted from the classical ‘no transport’ slowing down distribution. Important transport distortions away from the slowing down EP spectrum are illustrated by a focus on the coefficient of convection: EP energy flux divided by the product of EP average energy and EP particle flux.

  5. Transport of particles across continental shelves

    SciTech Connect

    Nittrouer, C.A. ); Wright, L.D. College of William and Mary, Gloucester Point, VA )

    1994-02-01

    Transport of particulate material across continental shelves is well demonstrated by the distributions on the seabed and in the water column of geological, chemical, or biological components, whose sources are found farther landward or farther seaward. This paper addresses passive (incapable of swimming) particles and their transport across (not necessarily off) continental shelves during high stands of sea level. Among the general factors that influence across-shelf transport are shelf geometry, latitudinal constraints, and the timescale of interest. Research studies have investigated the physical mechanisms of transport and have made quantitative estimates of mass flux across continental shelves. Important mechanisms include wind-driven flows, internal wave, wave-orbital flows, infragravity phenomena, buoyant plumes, and surf zone processes. Most particulate transport occurs in the portion of the water column closest to the seabed. Therefore physical processes are effective where and when they influence the bottom boundary layer, causing shear stresses sufficient to erode and transport particulate material. Biological and geological processes at the seabed play important roles within the boundary layer. The coupling of hydrodynamic forces from currents and surface gravity waves has a particularly strong influence on across-shelf transport; during storm events, the combined effect can transport particles tens of kilometers seaward. Several important mechanisms can cause bidirectional (seaward and landward) transport, and estimates of the net flux are difficult to obtain. Also, measurements of across-shelf transport are made difficult by the dominance of along-shelf transport. Geological parameters are often the best indicators of net across-shelf transport integrated over time scales longer than a month. For example, fluvially discharged particles with distinct composition commonly accumulate in the midshelf region. 47 refs., 16 figs.

  6. The energetic alpha particle transport method EATM

    SciTech Connect

    Kirkpatrick, R.C.

    1998-02-01

    The EATM method is an evolving attempt to find an efficient method of treating the transport of energetic charged particles in a dynamic magnetized (MHD) plasma for which the mean free path of the particles and the Larmor radius may be long compared to the gradient lengths in the plasma. The intent is to span the range of parameter space with the efficiency and accuracy thought necessary for experimental analysis and design of magnetized fusion targets.

  7. Dephasing-controlled particle transport devices

    NASA Astrophysics Data System (ADS)

    Kapetanović, Edin; Rodríguez-Rosario, César A.; Frauenheim, Thomas

    2016-12-01

    We study the role of dephasing in transport through different structures. We show that interference effects invalidate Kirchhoff's circuit laws in quantum devices and illustrate the emergence of Ohmic conduction under strong dephasing. We present circuits where the particle transport and the direction of rectification can be controlled through the dephasing strength. This suggests the possibility of constructing molecular devices with new functionalities which use dephasing as a control parameter.

  8. Scalable Domain Decomposed Monte Carlo Particle Transport

    NASA Astrophysics Data System (ADS)

    O'Brien, Matthew Joseph

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation. The main algorithms we consider are: • Domain decomposition of constructive solid geometry: enables extremely large calculations in which the background geometry is too large to fit in the memory of a single computational node. • Load Balancing: keeps the workload per processor as even as possible so the calculation runs efficiently. • Global Particle Find: if particles are on the wrong processor, globally resolve their locations to the correct processor based on particle coordinate and background domain. • Visualizing constructive solid geometry, sourcing particles, deciding that particle streaming communication is completed and spatial redecomposition. These algorithms are some of the most important parallel algorithms required for domain decomposed Monte Carlo particle transport. We demonstrate that our previous algorithms were not scalable, prove that our new algorithms are scalable, and run some of the algorithms up to 2 million MPI processes on the Sequoia supercomputer.

  9. Scalable Domain Decomposed Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, Matthew Joseph

    2013-12-05

    In this dissertation, we present the parallel algorithms necessary to run domain decomposed Monte Carlo particle transport on large numbers of processors (millions of processors). Previous algorithms were not scalable, and the parallel overhead became more computationally costly than the numerical simulation.

  10. FLUKA: A Multi-Particle Transport Code

    SciTech Connect

    Ferrari, A.; Sala, P.R.; Fasso, A.; Ranft, J.; /Siegen U.

    2005-12-14

    This report describes the 2005 version of the Fluka particle transport code. The first part introduces the basic notions, describes the modular structure of the system, and contains an installation and beginner's guide. The second part complements this initial information with details about the various components of Fluka and how to use them. It concludes with a detailed history and bibliography.

  11. Heavy particle transport in sputtering systems

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan

    2015-09-01

    This contribution aims to discuss the theoretical background of heavy particle transport in plasma sputtering systems such as direct current magnetron sputtering (dcMS), high power impulse magnetron sputtering (HiPIMS), or multi frequency capacitively coupled plasmas (MFCCP). Due to inherently low process pressures below one Pa only kinetic simulation models are suitable. In this work a model appropriate for the description of the transport of film forming particles sputtered of a target material has been devised within the frame of the OpenFOAM software (specifically dsmcFoam). The three dimensional model comprises of ejection of sputtered particles into the reactor chamber, their collisional transport through the volume, as well as deposition of the latter onto the surrounding surfaces (i.e. substrates, walls). An angular dependent Thompson energy distribution fitted to results from Monte-Carlo simulations is assumed initially. Binary collisions are treated via the M1 collision model, a modified variable hard sphere (VHS) model. The dynamics of sputtered and background gas species can be resolved self-consistently following the direct simulation Monte-Carlo (DSMC) approach or, whenever possible, simplified based on the test particle method (TPM) with the assumption of a constant, non-stationary background at a given temperature. At the example of an MFCCP research reactor the transport of sputtered aluminum is specifically discussed. For the peculiar configuration and under typical process conditions with argon as process gas the transport of aluminum sputtered of a circular target is shown to be governed by a one dimensional interaction of the imposed and backscattered particle fluxes. The results are analyzed and discussed on the basis of the obtained velocity distribution functions (VDF). This work is supported by the German Research Foundation (DFG) in the frame of the Collaborative Research Centre TRR 87.

  12. Particle Swarm Transport in Fracture Networks

    NASA Astrophysics Data System (ADS)

    Pyrak-Nolte, L. J.; Mackin, T.; Boomsma, E.

    2012-12-01

    Colloidal particles of many types occur in fractures in the subsurface as a result of both natural and industrial processes (e.g., environmental influences, synthetic nano- & micro-particles from consumer products, chemical and mechanical erosion of geologic material, proppants used in gas and oil extraction, etc.). The degree of localization and speed of transport of such particles depends on the transport mechanisms, the chemical and physical properties of the particles and the surrounding rock, and the flow path geometry through the fracture. In this study, we investigated the transport of particle swarms through artificial fracture networks. A synthetic fracture network was created using an Objet Eden 350V 3D printer to build a network of fractures. Each fracture in the network had a rectangular cross-sectional area with a constant depth of 7 mm but with widths that ranged from 2 mm to 11 mm. The overall dimensions of the network were 132 mm by 166 mm. The fracture network had 7 ports that were used either as the inlet or outlet for fluid flow through the sample or for introducing a particle swarm. Water flow rates through the fracture were controlled with a syringe pump, and ranged from zero flow to 6 ml/min. Swarms were composed of a dilute suspension (2% by mass) of 3 μm fluorescent polystyrene beads in water. Swarms with volumes of 5, 10, 20, 30 and 60 μl were used and delivered into the network using a second syringe pump. The swarm behavior was imaged using an optical fluorescent imaging system illuminated by green (525 nm) LED arrays and captured by a CCD camera. For fracture networks with quiescent fluids, particle swarms fell under gravity and remained localized within the network. Large swarms (30-60 μl) were observed to bifurcate at shallower depths resulting in a broader dispersal of the particles than for smaller swarm volumes. For all swarm volumes studied, particle swarms tended to bifurcate at the intersection between fractures. These

  13. Gyrokinetic particle simulation of neoclassical transport

    SciTech Connect

    Lin, Z.; Tang, W.M.; Lee, W.W.

    1995-08-01

    A time varying weighting ({delta}{ital f} ) scheme for gyrokinetic particle simulation is applied to a steady-state, multispecies simulation of neoclassical transport. Accurate collision operators conserving momentum and energy are developed and implemented. Simulation results using these operators are found to agree very well with neoclassical theory. For example, it is dynamically demonstrated that like-particle collisions produce no particle flux and that the neoclassical fluxes are ambipolar for an ion--electron plasma. An important physics feature of the present scheme is the introduction of toroidal flow to the simulations. Simulation results are in agreement with the existing analytical neoclassical theory. The poloidal electric field associated with toroidal mass flow is found to enhance density gradient-driven electron particle flux and the bootstrap current while reducing temperature gradient-driven flux and current. Finally, neoclassical theory in steep gradient profile relevant to the edge regime is examined by taking into account finite banana width effects. In general, in the present work a valuable new capability for studying important aspects of neoclassical transport inaccessible by conventional analytical calculation processes is demonstrated. {copyright} {ital 1995} {ital American} {ital Institute} {ital of} {ital Physics}.

  14. Particle Transport in Pure Electron Plasmas.

    NASA Astrophysics Data System (ADS)

    Kriesel, J. M.; Driscoll, C. F.

    1998-10-01

    At UCSD we confine pure-electron plasmas in Penning-Malmberg traps, which consist of cylindrical electrodes in an axial magnetic field (B ~ 100G). The trap is under ultra-high vacuum (10-10 Torr) so that transport due to electron-neutral collisions is negligible. Instead, cross-field particle transport is due to electron-electron collsions or from interactions with external fields. A plasma in one of our traps is roughly cylindrical in shape and rotates about its own axis due to the E x B drift from the space-charge field. Electron-electron collisions bring the plasma to a thermal equilibrium state of rigid rotation and uniform temperature. We find that the transport is driven by shears in the rotation velocity, and measure a coefficient of viscosity which is as much as 10,000 times larger than classical theory. This transport is driven by long-range ``E × B drift Coulomb collisions'' with impact parameters on the order of a Debye length rather than a cyclotron radius, as in classical theory. In our plasmas λD >> r_c, and O'Neil and Dubin have developed theories(Daniel H.E. Dubin, Phys. Plasmas 5), 1688 (1998) of transport in this regime. In addition to this work, I will also present measurements on the transport due to externally applied fields. The scalings provide insight into the overall confinement properties of our traps.

  15. Solar energetic particle anisotropies and insights into particle transport

    SciTech Connect

    Leske, R. A. Cummings, A. C.; Cohen, C. M. S.; Mewaldt, R. A.; Labrador, A. W.; Stone, E. C.; Wiedenbeck, M. E.; Christian, E. R.; Rosenvinge, T. T. von

    2016-03-25

    As solar energetic particles (SEPs) travel through interplanetary space, their pitch-angle distributions are shaped by the competing effects of magnetic focusing and scattering. Measurements of SEP anisotropies can therefore reveal information about interplanetary conditions such as magnetic field strength, topology, and turbulence levels at remote locations from the observer. Onboard each of the two STEREO spacecraft, the Low Energy Telescope (LET) measures pitch-angle distributions for protons and heavier ions up to iron at energies of about 2-12 MeV/nucleon. Anisotropies observed using LET include bidirectional flows within interplanetary coronal mass ejections, sunward-flowing particles when STEREO was magnetically connected to the back side of a shock, and loss-cone distributions in which particles with large pitch angles underwent magnetic mirroring at an interplanetary field enhancement that was too weak to reflect particles with the smallest pitch angles. Unusual oscillations in the width of a beamed distribution at the onset of the 23 July 2012 SEP event were also observed and remain puzzling. We report LET anisotropy observations at both STEREO spacecraft and discuss their implications for SEP transport, focusing exclusively on the extreme event of 23 July 2012 in which a large variety of anisotropies were present at various times during the event.

  16. Parallel and Portable Monte Carlo Particle Transport

    NASA Astrophysics Data System (ADS)

    Lee, S. R.; Cummings, J. C.; Nolen, S. D.; Keen, N. D.

    1997-08-01

    We have developed a multi-group, Monte Carlo neutron transport code in C++ using object-oriented methods and the Parallel Object-Oriented Methods and Applications (POOMA) class library. This transport code, called MC++, currently computes k and α eigenvalues of the neutron transport equation on a rectilinear computational mesh. It is portable to and runs in parallel on a wide variety of platforms, including MPPs, clustered SMPs, and individual workstations. It contains appropriate classes and abstractions for particle transport and, through the use of POOMA, for portable parallelism. Current capabilities are discussed, along with physics and performance results for several test problems on a variety of hardware, including all three Accelerated Strategic Computing Initiative (ASCI) platforms. Current parallel performance indicates the ability to compute α-eigenvalues in seconds or minutes rather than days or weeks. Current and future work on the implementation of a general transport physics framework (TPF) is also described. This TPF employs modern C++ programming techniques to provide simplified user interfaces, generic STL-style programming, and compile-time performance optimization. Physics capabilities of the TPF will be extended to include continuous energy treatments, implicit Monte Carlo algorithms, and a variety of convergence acceleration techniques such as importance combing.

  17. Particle Swarm Transport in Porous Media

    NASA Astrophysics Data System (ADS)

    Hoe, A.; Pyrak-Nolte, L. J.; Mitchell, C. A.

    2016-12-01

    Interest in particulate transport in the subsurface has increased with the increased use of micro-particulates in consumer products. Potential exists for contaminants to be released as a swarm, i.e. a drop-like collection of millions of micro-sized particles that exhibit a number of unique characteristics. The objective of this research is to identify key features of pore network topology and surface chemistry on swarm evolution in porous media. Synthetic translucent porous media were fabricated to image directly swarm transport along a layer of grain between an impermeable matrix. Two types of spherical grains ( 10 mm in diameter) were used: (1) hydrogel spheres that were hydrophilic and (2) 3D printed PMMA spheres that were hydrophobic. Swarms (5, 10 and 20 µL) were composed of 3 micron polystyrene beads (1-2% by weight) in either water or an aqueous KCL solution. During the experiments, the porous medium was fully submerged in the same solution used to compose the swarm. Swarms were either released into a pore or above a grain. The swarms were illuminated with a green (525 nm) LED array and imaged optically with a CCD camera. As swarms fell under gravity, bifurcation cascades occurred around grains. More bifurcations resulted in an increase in the lateral extent of the swarm transport path. Swarms released in a pore exhibited fewer bifurcations than those released above a grain. Particle-grain interactions between the swarm and grains were strongly affected by the surface chemistry of the grains. Swarms in the PMMA medium exhibited transport paths with a consistent ( 12-15 mm) lateral extent and left deposits of particles on the top surfaces of grains. In the hydrogel medium, the swarm particles tended to slide along and split around the surface of the grains, losing particles until the swarms were too dilute to image. The potential spread of particulate contaminants by swarms may yield highly dispersed or highly localized concentrations depending on the

  18. Particle velocity distribution in saltation transport.

    PubMed

    Ho, T D; Dupont, P; Ould El Moctar, A; Valance, A

    2012-05-01

    We report on wind-tunnel measurements of particle velocity distribution in aeolian transport. By performing extended statistics, we show that for saltation occurring over an erodible bed the vertical lift-off velocity distributions deviate significantly from a Gaussian law and exhibit a long tail accurately described by a lognormal law. In contrast, saltation over a rigid bed produces Gaussian velocity distributions. These results strongly suggest that the deviation from Gaussian distributions is a consequence of the splash process which is exclusively present in saltation transport over an erodible bed. We further suggest that the non-Gaussian statistics is intimately related to the statistical properties of a single splash event which produces ejection of particles with lift-off velocities distributed according to a lognormal law. This lognormal behavior can be simply inferred from the propagation process of the impact energy through the granular bed which can be viewed as the analog of a fragmentation process. These findings emphasize the crucial role of the splash process in saltation transport.

  19. Turbulent particle transport in magnetized fusion plasma

    NASA Astrophysics Data System (ADS)

    Bourdelle, C.

    2005-05-01

    Understanding the mechanisms responsible for particle transport is of the utmost importance for magnetized fusion plasmas. A peaked density profile is attractive to improve the fusion rate, which is proportional to the square of the density, and to self-generate a large fraction of non-inductive current required for continuous operation. Experiments in various tokamak devices (ASDEX Upgrade, DIII-D, JET, TCV, TEXT, TFTR) indicate the existence of a turbulent particle pinch. Recently, such a turbulent pinch has been unambiguously identified in Tore Supra very long discharges, in the absence of both collisional particle pinch and central particle source, for more than 4 min (Hoang et al 2003 Phys. Rev. Lett. 90 155002). This turbulent pinch is predicted by a quasilinear theory of particle transport (Weiland J et al 1989 Nucl. Fusion 29 1810), and confirmed by non-linear turbulence simulations (Garbet et al 2003 Phys. Rev. Lett. 91 035001) and general considerations based on the conservation of motion invariants (Baker et al 2004 Phys. Plasmas 11 992). Experimentally, the particle pinch is found to be sensitive to the magnetic field gradient in many cases (Hoang et al 2004 Phys. Rev. Lett. 93 135003, Zabolotsky et al 2003 Plasma Phys. Control. Fusion 45 735, Weisen et al 2004 Plasma Phys. Control. Fusion 46 751, Baker et al 2000 Nucl. Fusion 40 1003), to the temperature profile (Hoang et al 2004 Phys. Rev. Lett. 93 135003, Angioni et al 2004 Nucl. Fusion 44 827) and also to the collisionality that changes the nature of the microturbulence (Angioni et al 2003 Phys. Rev. Lett. 90 205003, Garzotti et al 2003 Nucl. Fusion 43 1829, Weisen et al 2004 31st EPS Conf. on Plasma Phys. (London) vol 28G (ECA) P-1.146, Lopes Cardozo N J 1995 Plasma Phys. Control. Fusion 37 799). The consistency of some of the observed dependences with the theoretical predictions gives us a clearer understanding of the particle pinch in tokamaks, allowing us to predict more accurately the density

  20. Mechanism of transport of IFT particles in C. elegans cilia by the concerted action of kinesin-II and OSM-3 motors.

    PubMed

    Pan, Xiaoyu; Ou, Guangshuo; Civelekoglu-Scholey, Gul; Blacque, Oliver E; Endres, Nicholas F; Tao, Li; Mogilner, Alex; Leroux, Michel R; Vale, Ronald D; Scholey, Jonathan M

    2006-09-25

    The assembly and function of cilia on Caenorhabditis elegans neurons depends on the action of two kinesin-2 motors, heterotrimeric kinesin-II and homodimeric OSM-3-kinesin, which cooperate to move the same intraflagellar transport (IFT) particles along microtubule (MT) doublets. Using competitive in vitro MT gliding assays, we show that purified kinesin-II and OSM-3 cooperate to generate movement similar to that seen along the cilium in the absence of any additional regulatory factors. Quantitative modeling suggests that this could reflect an alternating action mechanism, in which the motors take turns to move along MTs, or a mechanical competition, in which the motors function in a concerted fashion to move along MTs with the slow motor exerting drag on the fast motor and vice versa. In vivo transport assays performed in Bardet-Biedl syndrome (BBS) protein and IFT motor mutants favor a mechanical competition model for motor coordination in which the IFT motors exert a BBS protein-dependent tension on IFT particles, which controls the IFT pathway that builds the cilium foundation.

  1. PARTICLE TRANSPORT IN YOUNG PULSAR WIND NEBULAE

    SciTech Connect

    Tang Xiaping; Chevalier, Roger A. E-mail: rac5x@virginia.edu

    2012-06-20

    The model for pulsar wind nebulae (PWNe) as a result of the magnetohydrodynamic (MHD) downstream flow from a shocked, relativistic pulsar wind has been successful in reproducing many features of the nebulae observed close to central pulsars. However, observations of well-studied young nebulae like the Crab Nebula, 3C 58, and G21.5-0.9 do not show the toroidal magnetic field on a larger scale that might be expected in the MHD flow model; in addition, the radial variation of spectral index due to synchrotron losses is smoother than expected in the MHD flow model. We find that pure diffusion models can reproduce the basic data on nebular size and spectral index variation for the Crab, 3C 58, and G21.5-0.9. Most of our models use an energy-independent diffusion coefficient; power-law variations of the coefficient with energy are degenerate with variation in the input particle energy distribution index in the steady state, transmitting boundary case. Energy-dependent diffusion is a possible reason for the smaller diffusion coefficient inferred for the Crab. Monte Carlo simulations of the particle transport allowing for advection and diffusion of particles suggest that diffusion dominates over much of the total nebular volume of the Crab. Advection dominates close to the pulsar and is likely to play a role in the X-ray half-light radius. The source of diffusion and mixing of particles is uncertain, but may be related to the Rayleigh-Taylor instability at the outer boundary of a young PWN or to instabilities in the toroidal magnetic field structure.

  2. Dispersion of a plume of tracer particles by bedload transport

    NASA Astrophysics Data System (ADS)

    Lajeunesse, Eric; Devauchelle, Olivier; Houssais, Morgane; Seizilles, Grégoire

    2013-04-01

    Particles entrained by rivers tend to disperse as they move downstream. Understanding the mechanisms responsible for particle dispersion is therefore important to describe the transport of solid-phase contaminants in streams or the accumulation of cosmogenic radionuclides in sediment grains during transport. While the prediction of the sediment transport rate at a specific point has been the topic of a large number of investigations, particle dispersion has however received much less attention. Here, we use the erosion-deposition model proposed by Lajeunesse et al. [2010] to understand the transport of a plume of tracer particles. We restrict our analysis to the case of steady-state transport above a flat bed of uniform sediment. We show that, at equilibrium, the transport of a plume of tracer particles obeys an advection-exchange mechanism. After a transient dominated by initial conditions, the transport of the plume tends toward an advection-diffusion equation.

  3. Peristaltic particle transport using the Lattice Boltzmann method

    SciTech Connect

    Connington, Kevin William; Kang, Qinjun; Viswanathan, Hari S; Abdel-fattah, Amr; Chen, Shiyi

    2009-01-01

    Peristaltic transport refers to a class of internal fluid flows where the periodic deformation of flexible containing walls elicits a non-negligible fluid motion. It is a mechanism used to transport fluid and immersed solid particles in a tube or channel when it is ineffective or impossible to impose a favorable pressure gradient or desirous to avoid contact between the transported mixture and mechanical moving parts. Peristaltic transport occurs in many physiological situations and has myriad industrial applications. We focus our study on the peristaltic transport of a macroscopic particle in a two-dimensional channel using the lattice Boltzmann method. We systematically investigate the effect of variation of the relevant dimensionless parameters of the system on the particle transport. We find, among other results, a case where an increase in Reynolds number can actually lead to a slight increase in particle transport, and a case where, as the wall deformation increases, the motion of the particle becomes non-negative only. We examine the particle behavior when the system exhibits the peculiar phenomenon of fluid trapping. Under these circumstances, the particle may itself become trapped where it is subsequently transported at the wave speed, which is the maximum possible transport in the absence of a favorable pressure gradient. Finally, we analyze how the particle presence affects stress, pressure, and dissipation in the fluid in hopes of determining preferred working conditions for peristaltic transport of shear-sensitive particles. We find that the levels of shear stress are most hazardous near the throat of the channel. We advise that shear-sensitive particles should be transported under conditions where trapping occurs as the particle is typically situated in a region of innocuous shear stress levels.

  4. Transport of active ellipsoidal particles in ratchet potentials

    SciTech Connect

    Ai, Bao-Quan Wu, Jian-Chun

    2014-03-07

    Rectified transport of active ellipsoidal particles is numerically investigated in a two-dimensional asymmetric potential. The out-of-equilibrium condition for the active particle is an intrinsic property, which can break thermodynamical equilibrium and induce the directed transport. It is found that the perfect sphere particle can facilitate the rectification, while the needlelike particle destroys the directed transport. There exist optimized values of the parameters (the self-propelled velocity, the torque acting on the body) at which the average velocity takes its maximal value. For the ellipsoidal particle with not large asymmetric parameter, the average velocity decreases with increasing the rotational diffusion rate, while for the needlelike particle (very large asymmetric parameter), the average velocity is a peaked function of the rotational diffusion rate. By introducing a finite load, particles with different shapes (or different self-propelled velocities) will move to the opposite directions, which is able to separate particles of different shapes (or different self-propelled velocities)

  5. Kinesin-2 motors transport IFT-particles, dyneins and tubulin subunits to the tips of Caenorhabditis elegans sensory cilia: relevance to vision research?

    PubMed

    Scholey, Jonathan M

    2012-12-15

    The sensory outer segments (OS) of vertebrate retinal photoreceptors, which detect photons of light, resemble the distal segments of Caenorhabditis elegans sensory cilia, which detect chemical ligands that influence the chemotactic movements of the animal. Based on fluorescence microscopy assays performed in sensory cilia of living, transgenic "wild type" and mutant C. elegans, combined with in vitro motility assays using purified motors, we have proposed that two types of kinesin-2 motor, heterotrimeric kinesin-II and homodimeric OSM-3, cooperate to build amphid and phasmid sensory cilia on chemosensory neurons. Specifically, we propose that these motors function together in a redundant manner to build the axoneme core (aka middle segments (MS)), whereas OSM-3 alone serves to build the distal segments (DS). Furthermore, our data suggest that these motors accomplish this by driving two sequential steps of anterograde transport of cargoes consisting of IFT-particles, retrograde dynein motors, and ciliary tubulin subunits, from the transition zone to the tips of the axonemal microtubules (MTs). Homologs of kinesin-II (KIF3) and OSM-3 (KIF17) are also proposed to contribute to the assembly of vertebrate photoreceptors, although how they do so is currently unclear. Here I review our work on kinesin-2 motors, intraflagellar transport (IFT) and cilium biogenesis in C. elegans sensory cilia, and comment on its possible relevance to current research on vertebrate photoreceptor cilia assembly and function. Copyright © 2012 Elsevier Ltd. All rights reserved.

  6. Entropic Ratchet transport of interacting active Brownian particles

    SciTech Connect

    Ai, Bao-Quan; He, Ya-Feng; Zhong, Wei-Rong

    2014-11-21

    Directed transport of interacting active (self-propelled) Brownian particles is numerically investigated in confined geometries (entropic barriers). The self-propelled velocity can break thermodynamical equilibrium and induce the directed transport. It is found that the interaction between active particles can greatly affect the ratchet transport. For attractive particles, on increasing the interaction strength, the average velocity first decreases to its minima, then increases, and finally decreases to zero. For repulsive particles, when the interaction is very weak, there exists a critical interaction at which the average velocity is minimal, nearly tends to zero, however, for the strong interaction, the average velocity is independent of the interaction.

  7. Stochastic mechanics of loose boundary particle transport in turbulent flow

    NASA Astrophysics Data System (ADS)

    Dey, Subhasish; Ali, Sk Zeeshan

    2017-05-01

    In a turbulent wall shear flow, we explore, for the first time, the stochastic mechanics of loose boundary particle transport, having variable particle protrusions due to various cohesionless particle packing densities. The mean transport probabilities in contact and detachment modes are obtained. The mean transport probabilities in these modes as a function of Shields number (nondimensional fluid induced shear stress at the boundary) for different relative particle sizes (ratio of boundary roughness height to target particle diameter) and shear Reynolds numbers (ratio of fluid inertia to viscous damping) are presented. The transport probability in contact mode increases with an increase in Shields number attaining a peak and then decreases, while that in detachment mode increases monotonically. For the hydraulically transitional and rough flow regimes, the transport probability curves in contact mode for a given relative particle size of greater than or equal to unity attain their peaks corresponding to the averaged critical Shields numbers, from where the transport probability curves in detachment mode initiate. At an inception of particle transport, the mean probabilities in both the modes increase feebly with an increase in shear Reynolds number. Further, for a given particle size, the mean probability in contact mode increases with a decrease in critical Shields number attaining a critical value and then increases. However, the mean probability in detachment mode increases with a decrease in critical Shields number.

  8. Energetic Particle Transport in Strong Compressive Wave Turbulence Near Shocks

    SciTech Connect

    Le Roux, J.A.; Zank, G.P.; Li, G.; Webb, G.M.

    2005-08-01

    Strong interplanetary coronal mass ejection driven shocks are often accompanied by high levels of low frequency compressive wave turbulence. This might require a non-linear kinetic theory approach to properly describe energetic particle transport in their vicinity. We present a non-linear diffusive kinetic theory for suprathermal particle transport and stochastic acceleration along the background magnetic field in strong compressive dynamic wave turbulence to which small-scale Alfven waves are coupled. Our theory shows that the standard cosmic-ray transport equation must be revised for low suprathermal particle energies to accommodate fundamental changes in spatial diffusion (standard diffusion becomes turbulent diffusion) as well as modifications to particle convection, and adiabatic energy changes. In addition, a momentum diffusion term, which generates accelerated suprathermal particle spectra with a hard power law, must be added. Such effective first stage acceleration possibly leads to efficient injection of particles into second stage diffusive shock acceleration as described by standard theory.

  9. The effects of realistic pancake solenoids on particle transport

    SciTech Connect

    Gu, X.; Okamura, M.; Pikin, A.; Fischer, W.; Luo, Y.

    2011-02-01

    Solenoids are widely used to transport or focus particle beams. Usually, they are assumed as being ideal solenoids with a high axial-symmetry magnetic field. Using the Vector Field Opera program, we modeled asymmetrical solenoids with realistic geometry defects, caused by finite conductor and current jumpers. Their multipole magnetic components were analyzed with the Fourier fit method; we present some possible optimized methods for them. We also discuss the effects of 'realistic' solenoids on low energy particle transport. The finding in this paper may be applicable to some lower energy particle transport system design.

  10. NONLINEAR EFFECTS IN PARTICLE TRANSPORT IN STOCHASTIC MAGNETIC FIELDS

    SciTech Connect

    Vlad, M.; Spineanu, F.; Croitoru, A.

    2015-12-10

    Collisional particle transport in stochastic magnetic fields is studied using a semi-analytical method. The aim is to determine the influence of the nonlinear effects that occur in the magnetic field line random walk on particle transport. We show that particle transport coefficients can be strongly influenced by the magnetic line trapping. The conditions that correspond to these nonlinear regimes are determined. We also analyze the effects produced by the space variation of the large-scale magnetic field. We show that an average drift is generated by the gradient of the magnetic field, which strongly increases and reverses its orientation in the nonlinear regime.

  11. Inferring transient particle transport dynamics in live cells.

    PubMed

    Monnier, Nilah; Barry, Zachary; Park, Hye Yoon; Su, Kuan-Chung; Katz, Zachary; English, Brian P; Dey, Arkajit; Pan, Keyao; Cheeseman, Iain M; Singer, Robert H; Bathe, Mark

    2015-09-01

    Live-cell imaging and particle tracking provide rich information on mechanisms of intracellular transport. However, trajectory analysis procedures to infer complex transport dynamics involving stochastic switching between active transport and diffusive motion are lacking. We applied Bayesian model selection to hidden Markov modeling to infer transient transport states from trajectories of mRNA-protein complexes in live mouse hippocampal neurons and metaphase kinetochores in dividing human cells. The software is available at http://hmm-bayes.org/.

  12. Microstripes for transport and separation of magnetic particles

    PubMed Central

    Donolato, Marco; Dalslet, Bjarke Thomas; Hansen, Mikkel Fougt

    2012-01-01

    We present a simple technique for creating an on-chip magnetic particle conveyor based on exchange-biased permalloy microstripes. The particle transportation relies on an array of stripes with a spacing smaller than their width in conjunction with a periodic sequence of four different externally applied magnetic fields. We demonstrate the controlled transportation of a large population of particles over several millimeters of distance as well as the spatial separation of two populations of magnetic particles with different magnetophoretic mobilities. The technique can be used for the controlled selective manipulation and separation of magnetically labelled species. PMID:22655020

  13. Transport of inertial anisotropic particles under surface gravity waves

    NASA Astrophysics Data System (ADS)

    Dibenedetto, Michelle; Koseff, Jeffrey; Ouellette, Nicholas

    2016-11-01

    The motion of neutrally and almost-neutrally buoyant particles under surface gravity waves is relevant to the transport of microplastic debris and other small particulates in the ocean. Consequently, a number of studies have looked at the transport of spherical particles or mobile plankton in these conditions. However, the effects of particle-shape anisotropy on the trajectories and behavior of irregularly shaped particles in this type of oscillatory flow are still relatively unknown. To better understand these issues, we created an idealized numerical model which simulates the three-dimensional behavior of anisotropic spheroids in flow described by Airy wave theory. The particle's response is calculated using a simplified Maxey-Riley equation coupled with Jeffery's equation for particle rotation. We show that the particle dynamics are strongly dependent on their initial conditions and shape, with some some additional dependence on Stokes number.

  14. Perturbation theory for charged-particle transport in one dimension

    NASA Technical Reports Server (NTRS)

    Wilson, J. W.; Lamkin, S. L.

    1975-01-01

    Perturbation theory, when applied to charged-particle transport, generates a series solution that requires a double quadrature per term. The continuity of higher-order terms leads to numerical evaluation of the series. The high rate of convergence of the series makes the method a practical tool for charged-particle transport problems. The coupling of the neutron component in the case of proton transport in tissue does not greatly alter the rate of convergence. The method holds promise for a practical high-energy proton transport theory.

  15. Moisture Transport in Silica Gel Particle Beds: I. Theoretical Study

    SciTech Connect

    Pesaran, A. A.; Mills, A. F.

    1986-08-01

    Diffusion mechanisms of moisture within silica gel particles are investigated. It is found that for microporous silica gel surface diffusion is the dominant mechanism of moisture transport, while for macroporous silica gel both Knudsen and surface diffusion are important.

  16. Electrokinetic transport of heterogeneous particles in suspensions

    NASA Technical Reports Server (NTRS)

    Anderson, John L.

    1993-01-01

    The focus of research over the past nine months had been on a theory for the electrophoresis of slender particles and on trajectory analysis of colloidal doublets rotating in electric fields. Brief summaries of the research are given.

  17. Electrokinetic transport of heterogeneous particles in suspension

    NASA Technical Reports Server (NTRS)

    Velegol, D.; Garoff, Stephen; Anderson, John L.

    1994-01-01

    The Smoluchowski equation for electrophoresis predicts that the electrophoretic velocity of a particle is proportional to its zeta potential but not its size, shape, or orientation. Furthermore, the equation predicts that the rotation rate is identically zero. The Smoluchowski equation fails for heterogeneous particles (i.e., those with nonuniform zeta potentials). Recent theories and experiments show that particles with a dipole moment of zeta potential rotate into alignment with an externally applied electric field. For doublets (particles composed of two spheres) the rotation rate depends on (1) whether the spheres are rigidly rocked or freely rotating, and (2) the gap distance between the spheres. The relative configuration of two coagulated spheres is determined by the colloidal forces of the system. The goal of our research is to use measurements of electrophoretic rotation to determine the gap between two spheres of a colloidal doublet and also to determine whether or not the doublet is rigid.

  18. Heavy Particle Transport in the Turbulent Boundary Layer

    NASA Astrophysics Data System (ADS)

    Richter, D. H.

    2016-12-01

    To describe the emission and transport of dust in the atmosphere, assumptions must typically be made in order to connect the micro-scale emission and saltation process with the larger-scale atmospheric uptake and turbulent flux. In the context of numerical models, this can be thought of as the transport process which occurs between the domain bottom and the first vertical grid point. For example, in the limit of small particles (both low inertia and low settling velocity), theory built upon Monin-Obukhov similarity has proven effective in relating mean dust concentration profiles to surface emission fluxes. For increasing particle mass, however, it becomes more difficult to represent dust transport as a simple extension of the transport of a passive scalar due to issues such as the crossing trajectories effect. This study focuses specifically on the problem of large particle transport and dispersion in the turbulent boundary layer by utilizing direct numerical simulations with Lagrangian point-particle tracking to determine under what, if any, conditions the large particles can be described in a simplified Eulerian framework such as Monin-Obukhov similarity theory. In particular, results will be presented detailing the independent contributions of both particle inertia and particle settling velocity relative to the strength of the surrounding turbulent flow.

  19. Modeling particle transport in downward and upward flows

    NASA Astrophysics Data System (ADS)

    Basha, H. A.; Culligan, P. J.

    2010-07-01

    Experimental data obtained for particle transport in downward and upward flows in smooth and rough porous media are analyzed at various flow rates. The data analysis and interpretation are aided through an analytical model with linear kinetics that assumes two sites for particle deposition within a medium, namely, reversible and irreversible, together with a dual mode of irreversible deposition. The bimodal particle transport model is obtained using the Green's function method and is capable of fitting, with reasonable accuracy, the observed transport and deposition behavior of particles. Approximations for advection-dominated flows are also obtained that could represent a simplified modeling tool. Expressions of the temporal moments are developed and algebraic equations are derived that express the model parameters in terms of the moments of the measured particle concentration distributions. The transport models helped define the relationship of the modeled parameters to flow velocity and media roughness. The fitting results show that the parameters for rough and smooth media vary in a systematic way with the pore fluid velocity. The results also reveal that flow direction has a significant influence on the mode and magnitude of irreversible particle deposition for the conditions investigated. For the same seepage velocity, the rate of particle deposition is greater for upward flows than for downward flows. Moreover, roughness effects increase the irreversible particle deposition in downward flows but have little effect in upward flows.

  20. Transport in a Trellised Agricultural Canopy: Turbulence and Particle Dispersion

    NASA Astrophysics Data System (ADS)

    Miller, Nathan E.

    Turbulent transport of momentum, scalars, and heavy particles within plant canopies is strongly impacted by the canopy's effect on the flow field in the canopy sub-layer (CSL). Although considerable research has been conducted on momentum and particle transport in and above dense homogeneous plant canopies, relatively little has been performed in perennial trellised canopies which have repetitive inhomogeneities at the scale of the canopy height. Particle transport in such canopies is of great interest due to the increasing use of training systems of this type by growers and due to the multitude of particle types regularly dispersed in these canopies, e.g., fungal spores and droplets sprayed by growers. The focus of this work is on the transport of momentum and fungal-spore-sized particles in a trellised vineyard canopy. Due to the discrete two-dimensional nature of the vineyard canopy, CSL flow characteristics differ from those seen in homogeneous canopies and change as a function of the above-canopy wind direction. To determine the specifics of how the trellised canopy geometry and local meteorological conditions combine to determine the characteristics of momentum and particle transport under all possible wind directions, multiple field campaigns were conducted in a vineyard in Oregon. During each of these campaigns, extensive meteorological data were collected while particles were released into the canopy and particle concentrations were sampled at downwind locations. The meteorological and plume data showed that the canopy exerted inhomogeneous nonisotropic drag, caused channeling of the flow along the aisles, and led to persistent coherent flow effects. The combination of these effects led to momentum statistics varying with wind direction, particle transport being biased to along the rows, and plume shapes being more complicated than those seen in homogeneous canopies or freestream flows.

  1. Transport of finite size particles in confined narrow channels: Diffusion, coherence, and particle separation

    NASA Astrophysics Data System (ADS)

    Ai, Bao-Quan; Wu, Jian-Chun

    2013-07-01

    Transport of the finite size spherical Brownian particles is investigated in confined narrow channels with varying cross-section width. Applying the Fick-Jacobs approximation, we obtain the expressions of the particle current, the effective diffusion coefficient, and the coherence level of Brownian transport (the Péclet number). For the case of the biased constant force, the dependencies of the nonlinear mobility, the effective diffusion coefficient, and the Péclet number on the particle size exhibit striking behaviors. The Péclet number decreases with increasing the radius of the particle which shows that the big sizes of the particles reduce the coherence level of Brownian transport. There exists an optimized value of the radius at which the effective diffusion coefficient is maximal. For the case of the asymmetric unbiased force, due to the competition between the spatial asymmetry and the temporal asymmetry, the transport directions of the particles depend very sensitively on the size of the particle. Particles larger than a given threshold radius move to the left, whereas particles smaller than that move to the right. Therefore, one can separate particles of different radii and make them move towards opposite directions.

  2. Parameterization of Submesoscale Particle Transport in the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Haza, A. C.; Ozgokmen, T. M.; Griffa, A.; Poje, A. C.; Hogan, P. J.; Jacobs, G. A.

    2014-12-01

    Submesoscale flows have a significant impact on the transport at their own scales, yet require extensive data sets and numerical computations, making them challenging to approach deterministically. A recent Lagrangian parametrization to correct particle transport at the submesoscales is implemented to an eddy permitting ocean model at 1/25 degree grid for the surface circulation of the Gulf of Mexico. It combines mesoscale transport from the deterministic Lagrangian Coherent Structures (LCS) and statistical Lagrangian subgridscale (LSGS) models over the submesoscale range. Comparison to a 1km submesoscale-permitting ocean model shows a significant improvement of the scale-dependent relative dispersion and particle distribution.

  3. Models of motor-assisted transport of intracellular particles.

    PubMed Central

    Smith, D A; Simmons, R M

    2001-01-01

    One-dimensional models are presented for the macroscopic intracellular transport of vesicles and organelles by molecular motors on a network of aligned intracellular filaments. A motor-coated vesicle or organelle is described as a diffusing particle binding intermittently to filaments, when it is transported at the motor velocity. Two models are treated in detail: 1) a unidirectional model, where only one kind of motor is operative and all filaments have the same polarity; and 2) a bidirectional model, in which filaments of both polarities exist (for example, a randomly polarized actin network for myosin motors) and/or particles have plus-end and minus-end motors operating on unipolar filaments (kinesin and dynein on microtubules). The unidirectional model provides net particle transport in the absence of a concentration gradient. A symmetric bidirectional model, with equal mixtures of filament polarities or plus-end and minus-end motors of the same characteristics, provides rapid transport down a concentration gradient and enhanced dispersion of particles from a point source by motor-assisted diffusion. Both models are studied in detail as a function of the diffusion constant and motor velocity of bound particles, and their rates of binding to and detachment from filaments. These models can form the basis of more realistic models for particle transport in axons, melanophores, and the dendritic arms of melanocytes, in which networks of actin filaments and microtubules coexist and motors for both types of filament are implicated. PMID:11159382

  4. Dissipative particle dynamics model for colloid transport in porous media

    SciTech Connect

    Pan, W.; Tartakovsky, A. M.

    2013-08-01

    We present that the transport of colloidal particles in porous media can be effectively modeled with a new formulation of dissipative particle dynamics, which augments standard DPD with non-central dissipative shear forces between particles while preserving angular momentum. Our previous studies have demonstrated that the new formulation is able to capture accurately the drag forces as well as the drag torques on colloidal particles that result from the hydrodynamic retardation effect. In the present work, we use the new formulation to study the contact efficiency in colloid filtration in saturated porous media. Note that the present model include all transport mechanisms simultaneously, including gravitational sedimentation, interception and Brownian diffusion. Our results of contact efficiency show a good agreement with the predictions of the correlation equation proposed by Tufenkji and EliMelech, which also incorporate all transport mechanisms simultaneously without the additivity assumption.

  5. Isotope effects on particle transport in the Compact Helical System

    NASA Astrophysics Data System (ADS)

    Tanaka, K.; Okamura, S.; Minami, T.; Ida, K.; Mikkelsen, D. R.; Osakabe, M.; Yoshimura, Y.; Isobe, M.; Morita, S.; Matsuoka, K.

    2016-05-01

    The hydrogen isotope effects of particle transport were studied in the hydrogen and deuterium dominant plasmas of the Compact Helical System (CHS). Longer decay time of electron density after the turning-off of the gas puffing was observed in the deuterium dominant plasma suggesting that the recycling was higher and/or the particle confinement was better in the deuterium dominant plasma. Density modulation experiments showed the quantitative difference of the particle transport coefficients. Density was scanned from 0.8  ×  1019 m-3 to 4  ×  1019 m-3 under the same magnetic field and almost the same heating power. In the low density regime (line averaged density  <  2.5  ×  1019 m-3), the lower particle diffusivity and the larger inwardly directed core convection velocity was observed in the deuterium dominant plasma, while in the high density regime (line averaged density  >2.5  ×  1019 m-3) no clear difference was observed. This result indicates that the isotope effects of particle transport exist only in the low density regime. Comparison with neoclassical transport coefficients showed that the difference of particle transport is likely to be due to the difference of turbulence driven anomalous transport. Linear character of the ion scale turbulence was studied. The smaller linear growth rate qualitatively agreed with the reduced particle transport in the deuterium dominant plasma of the low density regime.

  6. Computational Investigation of the Transport of Burning Particles

    NASA Astrophysics Data System (ADS)

    Matvienko, O. V.; Fil'kov, A. I.; Grishin, A. M.

    2016-09-01

    Computational modeling of the dynamics of the convective column formed by a low forest fire and of the transport of particles burning in it has been carried out. At the initial stage of formation of a thermal column, medium- and large-size particles move with the ascending air flow to its upper boundary; then they are entrained by the torroidal vortex and carried out of the combustion zone to the outer boundary of the circulation flow where they settle to the underlying surface. With increasing size of particles the maximum rise height of particles and the distance for which they are transported by the vortex flow decrease. The temperature of large particles at the moment of their landing is above the critical one, which can initiate ignition of the underlying surface and the formation of a secondary site of fire.

  7. Intrinsic particle-induced lateral transport in microchannels

    PubMed Central

    Amini, Hamed; Sollier, Elodie; Weaver, Westbrook M.; Di Carlo, Dino

    2012-01-01

    In microfluidic systems at low Reynolds number, the flow field around a particle is assumed to maintain fore-aft symmetry, with fluid diverted by the presence of a particle, returning to its original streamline downstream. This current model considers particles as passive components of the system. However, we demonstrate that at finite Reynolds number, when inertia is taken into consideration, particles are not passive elements in the flow but significantly disturb and modify it. In response to the flow field, particles translate downstream while rotating. The combined effect of the flow of fluid around particles, particle rotation, channel confinement (i.e., particle dimensions approaching those of the channel), and finite fluid inertia creates a net recirculating flow perpendicular to the primary flow direction within straight channels that resembles the well-known Dean flow in curved channels. Significantly, the particle generating this flow remains laterally fixed as it translates downstream and only the fluid is laterally transferred. Therefore, as the particles remain inertially focused, operations can be performed around the particles in a way that is compatible with downstream assays such as flow cytometry. We apply this particle-induced transfer to perform fluid switching and mixing around rigid microparticles as well as deformable cells. This transport phenomenon, requiring only a simple channel geometry with no external forces to operate, offers a practical approach for fluid transfer at high flow rates with a wide range of applications, including sample preparation, flow reaction, and heat transfer. PMID:22761309

  8. Stochastic Simulation of Lagrangian Particle Transport in Turbulent Flows

    NASA Astrophysics Data System (ADS)

    Sun, Guangyuan

    This dissertation presents the development and validation of the One Dimensional Turbulence (ODT) multiphase model in the Lagrangian reference frame. ODT is a stochastic model that captures the full range of length and time scales and provides statistical information on fine-scale turbulent-particle mixing and transport at low computational cost. The flow evolution is governed by a deterministic solution of the viscous processes and a stochastic representation of advection through stochastic domain mapping processes. The three algorithms for Lagrangian particle transport are presented within the context of the ODT approach. The Type-I and -C models consider the particle-eddy interaction as instantaneous and continuous change of the particle position and velocity, respectively. The Type-IC model combines the features of the Type-I and -C models. The models are applied to the multi-phase flows in the homogeneous decaying turbulence and turbulent round jet. Particle dispersion, dispersion coefficients, and velocity statistics are predicted and compared with experimental data. The models accurately reproduces the experimental data sets and capture particle inertial effects and trajectory crossing effect. A new adjustable particle parameter is introduced into the ODT model, and sensitivity analysis is performed to facilitate parameter estimation and selection. A novel algorithm of the two-way momentum coupling between the particle and carrier phases is developed in the ODT multiphase model. Momentum exchange between the phases is accounted for through particle source terms in the viscous diffusion. The source term is implemented in eddy events through a new kernel transformation and an iterative procedure is required for eddy selection. This model is applied to a particle-laden turbulent jet flow, and simulation results are compared with experimental measurements. The effect of particle addition on the velocities of the gas phase is investigated. The development of

  9. Particle transport as a result of Resonant Magnetic Perturbations

    NASA Astrophysics Data System (ADS)

    Mordijck, Saskia

    This thesis makes contributes to field of plasma physics with a particular focus on particle transport as a result of resonant magnetic perturbations (RPMs) in magnetic confinement devices (Tokamaks). RPMs have proven to be a useful technique to suppress edge localized modes (ELMs) that under certain conditions can damage the confinement device. In order to suppress ELMs, these magnetic perturbations are created to be be resonant at the edge of the plasma (i.e., by selecting an n = 3 spectrum and a q95 = 3.6). However, RMPs lead to a changes in the density profile, not only in the pedestal area, but also deeper in the plasma core, limiting plasma performance. As a first contribution in this thesis we carefully investigate density pump-out, and show that it is the result of a change in particle transport (as opposed to a change in neutral fueling). A second contribution of this work is the introduction of a weighted magnetic diffusion coefficient (DOFL) that allows us to make quantitative comparisons between experimental datasets from different Tokamak devices. By comparing DOFL for MAST L-modes and DIII-D H-modes, we find that both machines exhibit a very different density pump-out for similar DOFL values. Since turbulent particle transport is very different for L and H-modes, we investigate, as a third contribution of this work, the influence of RMPs on turbulent particle transport in both MAST and DIII-D. We find that while an increase in turbulent transport on MAST correlates well with density pump-out, no meaningful correlation was found for pedestal density changes in DIII-D. Therefore, as a final contribution in this thesis, we investigate how convective particle transport parallel to the magnetic field alters the density profiles. We compare the increase in convective parallel particle transport and find good agreement with experimental density profiles.

  10. Transport effects due to particle erosion mechanisms. [in planetary rings

    NASA Technical Reports Server (NTRS)

    Durisen, R. H.

    1984-01-01

    Various processes can erode the surfaces of planetary ring particles. Recent estimates for Saturn's rings suggest that a centimeter-thick surface layer could be eroded from an isolated ring particle in less than 1000 yr by meteoroid impacts alone. The atoms, molecules, and chips ejected from ring particles by erosion will arc across the rings along elliptical orbits. For moderate ring optical depths, ejecta will be absorbed or inelastically scattered upon reintersecting the ring plane. Continuous exchange of ejecta between different ring regions can lead to net radial transport of mass and angular momentum, to changes in particle sizes, and to the buildup of chip regoliths several centimeters deep on the surfaces of ring particles. Because most of the erosional ejecta are not lost but merely exchanged over short distances, the net erosion rate of the surfaces of these ring particles will be much less than that estimated for an isolated particle. Numerical solutions for time-dependent ballistic transport under various assumptions suggest pile-up and spillover effects especially near regions of preexisting high optical depth contrast, such as the inner edges of A and B rings. Global redistribution could be significant over billions of years. Other features in planetary ring systems may be influenced by ballistic transport.

  11. Airflow and Particle Transport in the Human Respiratory System

    NASA Astrophysics Data System (ADS)

    Kleinstreuer, C.; Zhang, Z.

    2010-01-01

    Airflows in the nasal cavities and oral airways are rather complex, possibly featuring a transition to turbulent jet-like flow, recirculating flow, Dean's flow, vortical flows, large pressure drops, prevailing secondary flows, and merging streams in the case of exhalation. Such complex flows propagate subsequently into the tracheobronchial airways. The underlying assumptions for particle transport and deposition are that the aerosols are spherical, noninteracting, and monodisperse and deposit upon contact with the airway surface. Such dilute particle suspensions are typically modeled with the Euler-Lagrange approach for micron particles and in the Euler-Euler framework for nanoparticles. Micron particles deposit nonuniformly with very high concentrations at some local sites (e.g., carinal ridges of large bronchial airways). In contrast, nanomaterial almost coats the airway surfaces, which has implications of detrimental health effects in the case of inhaled toxic nanoparticles. Geometric airway features, as well as histories of airflow fields and particle distributions, may significantly affect particle deposition.

  12. Turbulent transport of alpha particles in tokamak plasmas

    NASA Astrophysics Data System (ADS)

    Croitoru, A.; Palade, D. I.; Vlad, M.; Spineanu, F.

    2017-03-01

    We investigate the \\boldsymbol{E}× \\boldsymbol{B} diffusion of fusion born α particles in tokamak plasmas. We determine the transport regimes for a realistic model that has the characteristics of the ion temperature gradient (ITG) or of the trapped electron mode (TEM) driven turbulence. It includes a spectrum of potential fluctuations that is modeled using the results of the numerical simulations, the drift of the potential with the effective diamagnetic velocity and the parallel motion. Our semi-analytical statistical approach is based on the decorrelation trajectory method (DTM), which is adapted to the gyrokinetic approximation. We obtain the transport coefficients as a function of the parameters of the turbulence and of the energy of the α particles. According to our results, significant turbulent transport of the α particles can appear only at energies of the order of 100 KeV. We determine the corresponding conditions.

  13. Controlled particle transport in a plasma chamber with striped electrode

    NASA Astrophysics Data System (ADS)

    Jiang, Ke; Li, Yang-fang; Shimizu, T.; Konopka, U.; Thomas, H. M.; Morfill, G. E.

    2009-12-01

    The controlled transport of micrometer size dust particles in a parallel-plate radio frequency discharge has been investigated. The lower stainless steel electrode consisted of 100 independently controllable electrical metal stripes. The voltage signals on these stripes were modulated, causing traveling plasma sheath distortions. Because the particles trapped in local potential wells moved according to the direction of the distortion, the transport velocity could be actively controlled by adjusting frequencies and phase shifts of the applied periodic voltage signals. To investigate the detailed principle of this transport, molecular dynamic simulations was performed to reproduce the observations with the plasma background conditions calculated by separated particle-in-cell simulations for the experimental parameters. The findings will help develop novel technologies for investigating large-scale complex plasma systems and techniques for achieving clean environments in plasma processing reactors.

  14. Controlled particle transport in a plasma chamber with striped electrode

    SciTech Connect

    Jiang Ke; Li Yangfang; Shimizu, T.; Konopka, U.; Thomas, H. M.; Morfill, G. E.

    2009-12-15

    The controlled transport of micrometer size dust particles in a parallel-plate radio frequency discharge has been investigated. The lower stainless steel electrode consisted of 100 independently controllable electrical metal stripes. The voltage signals on these stripes were modulated, causing traveling plasma sheath distortions. Because the particles trapped in local potential wells moved according to the direction of the distortion, the transport velocity could be actively controlled by adjusting frequencies and phase shifts of the applied periodic voltage signals. To investigate the detailed principle of this transport, molecular dynamic simulations was performed to reproduce the observations with the plasma background conditions calculated by separated particle-in-cell simulations for the experimental parameters. The findings will help develop novel technologies for investigating large-scale complex plasma systems and techniques for achieving clean environments in plasma processing reactors.

  15. Drift Wave Test Particle Transport in Reversed Shear Profile

    SciTech Connect

    Horton, W.; Park, H.B.; Kwon, J.M.; Stronzzi, D.; Morrison, P.J.; Choi, D.I.

    1998-06-01

    Drift wave maps, area preserving maps that describe the motion of charged particles in drift waves, are derived. The maps allow the integration of particle orbits on the long time scale needed to describe transport. Calculations using the drift wave maps show that dramatic improvement in the particle confinement, in the presence of a given level and spectrum of E x B turbulence, can occur for q(r)-profiles with reversed shear. A similar reduction in the transport, i.e. one that is independent of the turbulence, is observed in the presence of an equilibrium radial electric field with shear. The transport reduction, caused by the combined effects of radial electric field shear and both monotonic and reversed shear magnetic q-profiles, is also investigated.

  16. Particle transport in unsaturated fractured chalk under arid conditions.

    PubMed

    Weisbrod, Noam; Dahan, Ofer; Adar, Eilon M

    2002-05-01

    A series of field and laboratory experiments were conducted to study the mechanisms of particle detachment and transport from fractures in vadose chalk. Experiments of intermittent flow events along fracture surfaces were carried out in the laboratory. In the field, water was percolated from land surface via a discrete fracture into a compartmental sampler installed inside a horizontal corehole located I m below the surface. The mass, size distribution, and composition of the particles drained from the fracture voids were examined along with flow rates and salt dissolution. Two boreholes penetrating the underlying saturated zone were sampled and analyzed for colloidal concentration and composition. Most of the particle and solute release at the drained effluents occurred during the first several hours of flow, but erratic pulses of particles were still observed after long periods of time. Most of the detached particles had a mean diameter of >2 microm, while the mobile colloidal phase in the groundwater had a mean diameter of approximately 1 microm. Mineralogical composition of the groundwater colloids and the particles detached from the upper vadose fracture were similar. Laboratory observations demonstrated the importance of the existence of a coating layer, made of weathered particles and salts, on particle detachment. The results of this study suggest that: (1) particle detachment causes flow-rate variability in the unsaturated fracture; (2) the mechanisms of particle detachment and salt dissolution within the fracture are linked: and (3) although most of the detached particles are large and likely to accumulate inside fractures, some colloidal particles also eroded from the fracture void and are likely to be transported to the groundwater.

  17. Vectorization of Monte Carlo particle transport

    SciTech Connect

    Burns, P.J.; Christon, M.; Schweitzer, R.; Lubeck, O.M.; Wasserman, H.J.; Simmons, M.L.; Pryor, D.V. . Computer Center; Los Alamos National Lab., NM; Supercomputing Research Center, Bowie, MD )

    1989-01-01

    Fully vectorized versions of the Los Alamos National Laboratory benchmark code Gamteb, a Monte Carlo photon transport algorithm, were developed for the Cyber 205/ETA-10 and Cray X-MP/Y-MP architectures. Single-processor performance measurements of the vector and scalar implementations were modeled in a modified Amdahl's Law that accounts for additional data motion in the vector code. The performance and implementation strategy of the vector codes are related to architectural features of each machine. Speedups between fifteen and eighteen for Cyber 205/ETA-10 architectures, and about nine for CRAY X-MP/Y-MP architectures are observed. The best single processor execution time for the problem was 0.33 seconds on the ETA-10G, and 0.42 seconds on the CRAY Y-MP. 32 refs., 12 figs., 1 tab.

  18. Optimization of magnetic switches for single particle and cell transport

    SciTech Connect

    Abedini-Nassab, Roozbeh; Yellen, Benjamin B.; Murdoch, David M.; Kim, CheolGi

    2014-06-28

    The ability to manipulate an ensemble of single particles and cells is a key aim of lab-on-a-chip research; however, the control mechanisms must be optimized for minimal power consumption to enable future large-scale implementation. Recently, we demonstrated a matter transport platform, which uses overlaid patterns of magnetic films and metallic current lines to control magnetic particles and magnetic-nanoparticle-labeled cells; however, we have made no prior attempts to optimize the device geometry and power consumption. Here, we provide an optimization analysis of particle-switching devices based on stochastic variation in the particle's size and magnetic content. These results are immediately applicable to the design of robust, multiplexed platforms capable of transporting, sorting, and storing single cells in large arrays with low power and high efficiency.

  19. Interactive design environment transportation channel of relativistic charged particle beams

    NASA Astrophysics Data System (ADS)

    Osadchuk, I. O.; Averyanov, G. P.; Budkin, V. A.

    2017-01-01

    Considered a modern implementation of a computer environment for the design of channels of transportation of high-energy charged particle beams. The environment includes a software package for the simulation of the dynamics of charged particles in the channel, operating means for changing parameters of the channel, the elements channel optimization and processing of the output characteristics of the beam with the graphical output the main output parameters.

  20. Particle swarm optimization - Genetic algorithm (PSOGA) on linear transportation problem

    NASA Astrophysics Data System (ADS)

    Rahmalia, Dinita

    2017-08-01

    Linear Transportation Problem (LTP) is the case of constrained optimization where we want to minimize cost subject to the balance of the number of supply and the number of demand. The exact method such as northwest corner, vogel, russel, minimal cost have been applied at approaching optimal solution. In this paper, we use heurisitic like Particle Swarm Optimization (PSO) for solving linear transportation problem at any size of decision variable. In addition, we combine mutation operator of Genetic Algorithm (GA) at PSO to improve optimal solution. This method is called Particle Swarm Optimization - Genetic Algorithm (PSOGA). The simulations show that PSOGA can improve optimal solution resulted by PSO.

  1. Transport coefficients of soft repulsive particle fluids

    NASA Astrophysics Data System (ADS)

    Heyes, D. M.; Brańka, A. C.

    2008-03-01

    Molecular dynamics computer simulation has been used to compute the self-diffusion coefficient, D, and shear viscosity, ηs, of soft-sphere fluids, in which the particles interact through the soft-sphere pair potential, phi(r) = epsilon(σ/r)n, where n measures the steepness or stiffness of the potential, epsilon and σ are a characteristic energy and distance, respectively. The simulations were carried out on monodisperse systems for a range of n values from the hard-sphere (n\\to \\infty ) limit down to n = 4 over a range of densities. An ideal glass transition value was estimated from the limit where D and \\eta_{\\mathrm {s}}^{-1}\\to 0 for each value of n. Nucleation of the crystalline phase was found to intervene prior to the formation of the glass itself, as has been found previously for hard spheres (i.e. n\\to \\infty ). With increasing softness the glass transition moves further within the solid part of the phase diagram, as predicted by Cardenas and Tosi (2005 Phys. Lett. A 336 423), although the volume fractions at the glass transition estimated by the current procedure here are systematically lower than the predictions of that study.

  2. Particle Tracking Model and Abstraction of Transport Processes

    SciTech Connect

    B. Robinson

    2000-04-07

    The purpose of the transport methodology and component analysis is to provide the numerical methods for simulating radionuclide transport and model setup for transport in the unsaturated zone (UZ) site-scale model. The particle-tracking method of simulating radionuclide transport is incorporated into the FEHM computer code and the resulting changes in the FEHM code are to be submitted to the software configuration management system. This Analysis and Model Report (AMR) outlines the assumptions, design, and testing of a model for calculating radionuclide transport in the unsaturated zone at Yucca Mountain. In addition, methods for determining colloid-facilitated transport parameters are outlined for use in the Total System Performance Assessment (TSPA) analyses. Concurrently, process-level flow model calculations are being carrier out in a PMR for the unsaturated zone. The computer code TOUGH2 is being used to generate three-dimensional, dual-permeability flow fields, that are supplied to the Performance Assessment group for subsequent transport simulations. These flow fields are converted to input files compatible with the FEHM code, which for this application simulates radionuclide transport using the particle-tracking algorithm outlined in this AMR. Therefore, this AMR establishes the numerical method and demonstrates the use of the model, but the specific breakthrough curves presented do not necessarily represent the behavior of the Yucca Mountain unsaturated zone.

  3. Experimental investigation of suspended particles transport through porous media: particle and grain size effect.

    PubMed

    Liu, Quansheng; Cui, Xianze; Zhang, Chengyuan; Huang, Shibing

    2016-01-01

    Particle and grain size may influence the transportation and deposition characteristics of particles within pollutant transport and within granular filters that are typically used in wastewater treatment. We conducted two-dimensional sandbox experiments using quartz powder as the particles and quartz sand as the porous medium to study the response of transportation and deposition formation to changes in particle diameter (ds, with median diameter 18, 41, and 82 μm) and grain diameter (dp, with median diameter 0.36, 1.25, and 2.82 mm) considering a wide range of diameter ratios (ds/dp) from 0.0064 to 0.228. Particles were suspended in deionized water, and quartz sand was used as the porous medium, which was meticulously cleaned to minimize any physicochemical and impurities effects that could result in indeterminate results. After the experiments, the particle concentration of the effluent and particle mass per gram of dry sands were measured to explore changes in transportation and deposition characteristics under different conditions. In addition, a micro-analysis was conducted to better analyse the results on a mesoscopic scale. The experimental observation analyses indicate that different diameter ratios (ds/dp) may lead to different deposit formations. As ds/dp increased, the deposit formation changed from 'Random Deposition Type' to 'Gradient Deposition Type', and eventually became 'Inlet Deposition Type'.

  4. [alpha]-particle transport-driven current in tokamaks

    SciTech Connect

    Heikkinen, J.A. ); Sipilae, S.K. )

    1995-03-01

    It is shown that the radial transport of fusion-born energetic [alpha] particles, induced by electrostatic waves traveling in one poloidal direction, is directly connected to a net momentum of [alpha] particles in the toroidal direction in tokamaks. Because the momentum change is almost independent of toroidal velocity, the energy required for the momentum generation remains small on an [alpha]-particle population sustained by an isotropic time-independent source. By numerical toroidal Monte Carlo calculations it is shown that the current carried by [alpha] particles in the presence of intense well penetrated waves can reach several mega-amperes in reactor-sized tokamaks. The current obtained can greatly exceed the neoclassical bootstrap current of the [alpha] particles.

  5. Approximation of the transport equation by a weighted particle method

    SciTech Connect

    Mas-Gallic, S.; Poupaud, F.

    1988-08-01

    We study a particle method for numerically solving a model equation for the neutron transport. We present the method and develop the theoretical convergence analysis. We prove the stability and the convergence of the method in L/sup infinity/. Some computational test results are given.

  6. Probing cytoskeleton dynamics by intracellular particle transport analysis

    NASA Astrophysics Data System (ADS)

    Götz, M.; Hodeck, K. F.; Witzel, P.; Nandi, A.; Lindner, B.; Heinrich, D.

    2015-07-01

    All cellular functions arise from the transport of molecules through a heterogeneous, highly dynamic cell interior for intracellular signaling. Here, the impact of intracellular architecture and cytoskeleton dynamics on transport processes is revealed by high-resolution single particle tracking within living cells, in combination with time-resolved local mean squared displacement (I-MSD) analysis. We apply the I-MSD analysis to trajectories of 200 nm silica particles within living cells of Dictyostelium discoideum obtained by high resolution spinning disc confocal microscopy with a frame rate of 100 fps and imaging in one fixed focal plane. We investigate phases of motor-driven active transport and subdiffusion, normal diffusion, as well as superdiffusion with high spatial and temporal resolution. Active directed intracellular motion is attributed to microtubule associated molecular motor driven transport with average absolute velocities of 2.8 μm s-1 for 200 nm diameter particles. Diffusion processes of these particles within wild-type cells are found to exhibit diffusion constants ranging across two orders of magnitude from subdiffusive to superdiffusive behavior. This type of analysis might prove of ample importance for medical applications, like targeted drug treatment of cells by nano-sized carriers or innovative diagnostic assays.

  7. MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS

    EPA Science Inventory

    MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS. Jung-il Choi*, Center for Environmental Medicine, University of North Carolina, Chapel Hill, NC 27599; C. S. Kim, USEPA National Health and Environmental Effects Research Lab. RTP, NC 27711

    Partic...

  8. MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS

    EPA Science Inventory

    MATHEMATICAL ANALYSIS OF PARTICLE TRANSPORT AND DEPOSITION IN HUMAN LUNGS. Jung-il Choi*, Center for Environmental Medicine, University of North Carolina, Chapel Hill, NC 27599; C. S. Kim, USEPA National Health and Environmental Effects Research Lab. RTP, NC 27711

    Partic...

  9. Modeling transport and aggregation of volcanic ash particles

    NASA Astrophysics Data System (ADS)

    Costa, Antonio; Folch, Arnau; Macedonio, Giovanni; Durant, Adam

    2010-05-01

    A complete description of ash aggregation processes in volcanic clouds is an very arduous task and the full coupling of ash transport and ash aggregation models is still computationally prohibitive. A large fraction of fine ash injected in the atmosphere during explosive eruptions aggregate because of complex interactions of surface liquid layers, electrostatic forces, and differences in settling velocities. The formation of aggregates of size and density different from those of the primary particles dramatically changes the sedimentation dynamics and results in lower atmospheric residence times of ash particles and in the formation of secondary maxima of tephra deposit. Volcanic ash transport models should include a full aggregation model accounting for all particle class interaction. However this approach would require prohibitive computational times. Here we present a simplified model for wet aggregation that accounts for both atmospheric and volcanic water transport. The aggregation model assumes a fractal relationship for the number of primary particles in aggregates, average efficiencies factors, and collision frequency functions accounting for Brownian motion, laminar and turbulent fluid shear, and differential settling velocity. We implemented the aggregation model in the WRF+FALL3D coupled modelling system and applied it to different eruptions where aggregation has been recognized to play an important role, such as the August and September 1992 Crater Peak eruptions and the 1980 Mt St Helens eruption. Moreover, understanding aggregation processes in volcanic clouds will contribute to mitigate the risks related with volcanic ash transport and sedimentation.

  10. Linear kinetic theory and particle transport in stochastic mixtures

    SciTech Connect

    Pomraning, G.C.

    1995-12-31

    We consider the formulation of linear transport and kinetic theory describing energy and particle flow in a random mixture of two or more immiscible materials. Following an introduction, we summarize early and fundamental work in this area, and we conclude with a brief discussion of recent results.

  11. Particle transport and flow modification in planar temporally evolving laminar mixing layers. I. Particle transport under one-way coupling

    NASA Astrophysics Data System (ADS)

    Narayanan, Chidambaram; Lakehal, Djamel

    2006-09-01

    Simulations of two-dimensional, particle-laden mixing layers were performed for particles with Stokes numbers of 0.3, 0.6, 1, and 2 under the assumption of one-way coupling using the Eulerian-Lagrangian method; two-way coupling is addressed in Part II. Analysis of interphase momentum transfer was performed in the Eulerian frame of reference by looking at the balance of fluid-phase mean momentum, mean kinetic energy, modal kinetic energy, and particle-phase mean momentum. The differences in the dominant mechanisms of vertical transport of streamwise momentum between the fluid and particle phases is clearly brought out. In the fluid phase, growth of the mixing layer is due to energy transfer from the mean flow to the unstable Kelvin-Helmholtz modes, and transport of mean momentum by these modes. In contrast, in the particle phase, the primary mechanism of vertical transport of streamwise momentum is convection due to the mean vertical velocity induced by the centrifuging of particles by the spanwise Kelvin-Helmholtz vortices. Although the drag force and the particle-phase modal stress play an important role in the early stages of the evolution of the mixing layer, their role is shown to decrease during the pairing process. After pairing, the particle-phase mean streamwise momentum balance is accounted for by the convection and drag force term. The particle-phase modal stress term is shown to be strongly connected to the fluid phase modal stress with a Stokes-number-dependent time lag in its evolution.

  12. The Effect of Particle Density on Aeolian Transport

    NASA Technical Reports Server (NTRS)

    Williams, S. H.; Greeley, R.

    1985-01-01

    A set of experiments using a wide range of particle densities was performed in an open-circuit, terrestrial-atmospheric-pressure wind tunnel at Arizona State University. The results show that saltation flux equations derived for typical geologic material overpredict the flux of low-density particles. Walnut shells (approximately 1.1 g/cc) were used in the experiment and correspond to volcanic ash or ice. Less mass is transported by the wind in the case of low particle density because the style of transport is different. There is a direct, counter-intuitive relationship between particle density and transport height. Measurements of the vertical distribution of material show that the low-density walnut shells travel in a zone within 10 cm of the surface while high-density (approximately 4.5 g/cc) chromite particles travel as 50 cm. Furthermore, the overall saltation rate of the chromite is approximately four times greater than the walnut shells at the same freestream wind speed, even though the wind is much further above threshold for the walnut shells.

  13. Origin and transport of high energy particles in the galaxy

    NASA Technical Reports Server (NTRS)

    Wefel, John P.

    1987-01-01

    The origin, confinement, and transport of cosmic ray nuclei in the galaxy was studied. The work involves interpretations of the existing cosmic ray physics database derived from both balloon and satellite measurements, combined with an effort directed towards defining the next generation of instruments for the study of cosmic radiation. The shape and the energy dependence of the cosmic ray pathlength distribution in the galaxy was studied, demonstrating that the leaky box model is not a good representation of the detailed particle transport over the energy range covered by the database. Alternative confinement methods were investigated, analyzing the confinement lifetime in these models based upon the available data for radioactive secondary isotopes. The source abundances of several isotopes were studied using compiled nuclear physics data and the detailed transport calculations. The effects of distributed particle acceleration on the secondary to primary ratios were investigated.

  14. Applying Dispersive Changes to Lagrangian Particles in Groundwater Transport Models

    USGS Publications Warehouse

    Konikow, L.F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative. ?? US Government 2010.

  15. Applying dispersive changes to Lagrangian particles in groundwater transport models

    USGS Publications Warehouse

    Konikow, Leonard F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative.

  16. Particle Dynamics in Asymmetry-Induced Transport: a Computational Study

    NASA Astrophysics Data System (ADS)

    Eggleston, D. L.

    2005-10-01

    We have developed a simple computer code as an aid to resolving the discrepanies between our experimentsootnotetextD.L. Eggleston and B. Carrillo, Phys. Plasmas 10, 1308 (2003). and the theoryootnotetextD.L. Eggleston and T.M. O'Neil, Phys. Plasmas 6, 2699 (1999). of asymmetry-induced transport. The code employs the fourth- order Runge-Kutta method to advance the particles in prescribed fields matching our experiment. For a single helical asymmety φ(r)(kz+lθ-φt), significant motion in the radial direction is restricted to those particles near the resonant velocity. Both the location and the width of this resonance are consistent with expectations. When a standing wave asymmetry is used (i.e., two counter-propagating helical waves), additional dynamical behaviors are observed. Stocastic motion occurs when the resonant regions of the two waves overlap, allowing a larger population of particles to undergo large radial excursions. There is also a class of particles with restricted axial motion, as in trapped particle modesootnotetextA.A. Kabantsev et al., Phys. Rev. Lett. 89, 245001 (2002).. These particles, which also make large radial excursions, are located near the radius where θ= φ/l. Further progress in understanding asymmetry-induced transport may require inclusion of these effects.

  17. Particle acceleration and transport in a chaotic magnetic field

    NASA Astrophysics Data System (ADS)

    Li, X.; Li, G.; Dasgupta, B.

    2012-12-01

    Time-dependent chaotic magnetic field can arise from a simple asymmetric current wire-loop system (CWLS). Such simple CWLSs exist, for example, in solar flares. Indeed one can use an ensemble of such systems to model solar active region magnetic field [1,2]. Here we use test particle simulation to investigate particle transport and energization in such a time-dependent chaotic magnetic field, and through induction, a chaotic electric field. We first construct an ensemble of simple systems based on the estimated size and field strength of solar active region. By following the trajectories of single charged particles, we will examine how particle energy is changed. Diffusion coefficients in both real space and momentum space can be calculated as well as the average trapped time of the particles within chaotic field region. Particle energy spectrum as a function of time will be examined. [1] Dasgupta, B. and Abhay K. Ram, (2007) Chaotic magnetic fields due to asymmetric current configurations -application to cross field diffusion of particles in cosmic rays, (Presented at the 49th Annual Meeting of the DPP, APS, Abstract # BP8.00102) [2] G. Li, B. Dasgupta, G. Webb, and A. K. Ram, (2009) Particle Motion and Energization in a Chaotic Magnetic Field, AIP Conf. Proc. 1183, pp. 201-211; doi: http://dx.doi.org/10.1063/1.3266777

  18. Modeling reactive transport with particle tracking and kernel estimators

    NASA Astrophysics Data System (ADS)

    Rahbaralam, Maryam; Fernandez-Garcia, Daniel; Sanchez-Vila, Xavier

    2015-04-01

    Groundwater reactive transport models are useful to assess and quantify the fate and transport of contaminants in subsurface media and are an essential tool for the analysis of coupled physical, chemical, and biological processes in Earth Systems. Particle Tracking Method (PTM) provides a computationally efficient and adaptable approach to solve the solute transport partial differential equation. On a molecular level, chemical reactions are the result of collisions, combinations, and/or decay of different species. For a well-mixed system, the chem- ical reactions are controlled by the classical thermodynamic rate coefficient. Each of these actions occurs with some probability that is a function of solute concentrations. PTM is based on considering that each particle actually represents a group of molecules. To properly simulate this system, an infinite number of particles is required, which is computationally unfeasible. On the other hand, a finite number of particles lead to a poor-mixed system which is limited by diffusion. Recent works have used this effect to actually model incomplete mix- ing in naturally occurring porous media. In this work, we demonstrate that this effect in most cases should be attributed to a defficient estimation of the concentrations and not to the occurrence of true incomplete mixing processes in porous media. To illustrate this, we show that a Kernel Density Estimation (KDE) of the concentrations can approach the well-mixed solution with a limited number of particles. KDEs provide weighting functions of each particle mass that expands its region of influence, hence providing a wider region for chemical reactions with time. Simulation results show that KDEs are powerful tools to improve state-of-the-art simulations of chemical reactions and indicates that incomplete mixing in diluted systems should be modeled based on alternative conceptual models and not on a limited number of particles.

  19. Stochastic transport of interacting particles in periodically driven ratchets

    NASA Astrophysics Data System (ADS)

    Savel'Ev, Sergey; Marchesoni, Fabio; Nori, Franco

    2004-12-01

    An open system of overdamped, interacting Brownian particles diffusing on a periodic substrate potential U(x+l)=U(x) is studied in terms of an infinite set of coupled partial differential equations describing the time evolution of the relevant many-particle distribution functions. In the mean-field approximation, this hierarchy of equations can be replaced by a nonlinear integro-differential Fokker-Planck equation. This is applicable when the distance a between particles is much less than the interaction length λ , i.e., a particle interacts with many others, resulting in averaging out fluctuations. The equation obtained in the mean-field approximation is applied to an ensemble of locally (a≪λ≪l) interacting (either repelling or attracting) particles placed in an asymmetric one-dimensional substrate potential, either with an oscillating temperature (temperature rachet) or driven by an ac force (rocked ratchet). In both cases we focus on the high-frequency limit. For the temperature ratchet, we find that the net current is typically suppressed (or can even be inverted) with increasing density of the repelling particles. In contrast, the net current through a rocked ratchet can be enhanced by increasing the density of the repelling particles. In the case of attracting particles, our perturbation technique is valid up to a critical value of the particle density, above which a finite fraction of the particles starts condensing in a liquidlike state near the substrate minima. The dependence of the net transport current on the particle density and the interparticle potential is analyzed in detail for different values of the ratchet parameters.

  20. Stochastic transport of interacting particles in periodically driven ratchets.

    PubMed

    Savel'ev, Sergey; Marchesoni, Fabio; Nori, Franco

    2004-12-01

    An open system of overdamped, interacting Brownian particles diffusing on a periodic substrate potential U(x+l)=U(x) is studied in terms of an infinite set of coupled partial differential equations describing the time evolution of the relevant many-particle distribution functions. In the mean-field approximation, this hierarchy of equations can be replaced by a nonlinear integro-differential Fokker-Planck equation. This is applicable when the distance a between particles is much less than the interaction length lambda , i.e., a particle interacts with many others, resulting in averaging out fluctuations. The equation obtained in the mean-field approximation is applied to an ensemble of locally (aparticles placed in an asymmetric one-dimensional substrate potential, either with an oscillating temperature (temperature rachet) or driven by an ac force (rocked ratchet). In both cases we focus on the high-frequency limit. For the temperature ratchet, we find that the net current is typically suppressed (or can even be inverted) with increasing density of the repelling particles. In contrast, the net current through a rocked ratchet can be enhanced by increasing the density of the repelling particles. In the case of attracting particles, our perturbation technique is valid up to a critical value of the particle density, above which a finite fraction of the particles starts condensing in a liquidlike state near the substrate minima. The dependence of the net transport current on the particle density and the interparticle potential is analyzed in detail for different values of the ratchet parameters.

  1. Analysis of cargo transport by IFT and GFP imaging of IFT in Chlamydomonas.

    PubMed

    Diener, Dennis

    2009-01-01

    Chlamydomonas reinhardtii is the organism in which intraflagellar transport (IFT) was first visualized and in which the composition of IFT particles was originally elucidated. As the universality of IFT among ciliated/flagellated cells was uncovered, the diversity of organisms used to study IFT has grown. Still, because of the ease of isolation of flagella from Chlamydomonas and the battery of temperature-sensitive mutants affecting IFT proteins and motors, this unicellular alga remains the principal model for biochemical studies of IFT motors and cargo; furthermore, the long, exposed flagella of this cell are ideally suited for observing IFT in real time with GFP-tagged components of IFT.

  2. Transport of sputtered particles in capacitive sputter sources

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan; Mussenbrock, Thomas

    2015-07-01

    The transport of sputtered aluminum inside a multi frequency capacitively coupled plasma chamber is simulated by means of a kinetic test multi-particle approach. A novel consistent set of scattering parameters obtained for a modified variable hard sphere collision model is presented for both argon and aluminum. An angular dependent Thompson energy distribution is fitted to results from Monte Carlo simulations and used for the kinetic simulation of the transport of sputtered aluminum. For the proposed configuration, the transport of sputtered particles is characterized under typical process conditions at a gas pressure of p = 0.5 Pa. It is found that—due to the peculiar geometric conditions—the transport can be understood in a one dimensional picture, governed by the interaction of the imposed and backscattered particle fluxes. It is shown that the precise geometric features play an important role only in proximity to the electrode edges, where the effect of backscattering from the outside chamber volume becomes the governing mechanism.

  3. Particle, momentum and thermal transport in the PTRANSP code

    NASA Astrophysics Data System (ADS)

    Bateman, G.; Halpern, F. D.; Kritz, A. H.; Pankin, A. Y.; Rafiq, T.; McCune, D. C.; Budny, R. V.; Indireshkumar, K.

    2008-11-01

    The combined effects of particle, momentum and thermal transport are investigated in tokamak discharges using a coupled system of transport equations implemented in the PTRANSP integrated modeling code. The magnetic diffusion equation is advanced separately, along with the evolution of the equilibrium. Simulations are carried out using theory-based models to compute transport, sources and sinks. Boundary conditions are either read from data or computed using a pedestal model for H-mode discharges. Different techniques are explored for controlling numerical problems [1] in time-dependent simulations that include sawtooth oscillations and other rapid changes in the profiles. Results for the density, temperature and toroidal angular velocity profiles are compared with experimental data. [1] S.C. Jardin et al, ``On 1D diffusion problems with a gradient-dependent diffusion coefficient''; G.V. Pereverzev and G. Corrigan, ``Stable numeric scheme for diffusion equation with a stiff transport''; both papers to appear in Comp. Phys. Comm. (2008).

  4. Full f gyrokinetic method for particle simulation of tokamak transport

    SciTech Connect

    Heikkinen, J.A. Janhunen, S.J.; Kiviniemi, T.P.; Ogando, F.

    2008-05-10

    A gyrokinetic particle-in-cell approach with direct implicit construction of the coefficient matrix of the Poisson equation from ion polarization and electron parallel nonlinearity is described and applied in global electrostatic toroidal plasma transport simulations. The method is applicable for calculation of the evolution of particle distribution function f including as special cases strong plasma pressure profile evolution by transport and formation of neoclassical flows. This is made feasible by full f formulation and by recording the charge density changes due to the ion polarization drift and electron acceleration along the local magnetic field while particles are advanced. The code has been validated against the linear predictions of the unstable ion temperature gradient mode growth rates and frequencies. Convergence and saturation in both turbulent and neoclassical limit of the ion heat conductivity is obtained with numerical noise well suppressed by a sufficiently large number of simulation particles. A first global full f validation of the neoclassical radial electric field in the presence of turbulence for a heated collisional tokamak plasma is obtained. At high Mach number (M{sub p}{approx}1) of the poloidal flow, the radial electric field is significantly enhanced over the standard neoclassical prediction. The neoclassical radial electric field together with the related GAM oscillations is found to regulate the turbulent heat and particle diffusion levels particularly strongly in a large aspect ratio tokamak at low plasma current.

  5. Time-dependent Perpendicular Transport of Energetic Particles for Different Turbulence Configurations and Parallel Transport Models

    NASA Astrophysics Data System (ADS)

    Lasuik, J.; Shalchi, A.

    2017-09-01

    Recently, a new theory for the transport of energetic particles across a mean magnetic field was presented. Compared to other nonlinear theories the new approach has the advantage that it provides a full time-dependent description of the transport. Furthermore, a diffusion approximation is no longer part of that theory. The purpose of this paper is to combine this new approach with a time-dependent model for parallel transport and different turbulence configurations in order to explore the parameter regimes for which we get ballistic transport, compound subdiffusion, and normal Markovian diffusion.

  6. Parameter estimation for fractional transport: A particle-tracking approach

    NASA Astrophysics Data System (ADS)

    Chakraborty, Paramita; Meerschaert, Mark M.; Lim, Chae Young

    2009-10-01

    Space-fractional advection-dispersion models provide attractive alternatives to the classical advection-dispersion equation for model applications that exhibit early arrivals and plume skewness. This paper develops a flexible method for estimating the parameters of the fractional transport model on the basis of spatial plume snapshots or temporal breakthrough curve data. A particle-tracking approach provides error bars for the parameter estimates and a general method for model fitting and comparison via optimal weighted least squares. A simple model of concentration variance, based on the particle-tracking approach, identifies the optimal weights.

  7. How entropy and hydrodynamics cooperate in rectifying particle transport

    NASA Astrophysics Data System (ADS)

    Martens, S.; Schmid, G.; Straube, A. V.; Schimansky-Geier, L.; Hänggi, P.

    2013-10-01

    Using the analytical Fick-Jacobs approximation formalism and extensive Brownian dynamics simulations we study particle transport through two-dimensional periodic channels with triangularly shaped walls. Directed motion is caused by the interplay of constant bias acting along the channel axis and a pressure-driven flow. In particular, we analyze the particle mobility and the effective diffusion coefficient. The mechanisms of entropic rectification is revealed in channels with a broken spatial reflection symmetry in presence of hydrodynamically enforced entropic trapping. Due to the combined action of the forcing and the pressure-driven flow field, efficient rectification with a drastically reduced diffusivity is achieved.

  8. Particle acceleration, transport and turbulence in cosmic and heliospheric physics

    NASA Technical Reports Server (NTRS)

    Matthaeus, W.

    1992-01-01

    In this progress report, the long term goals, recent scientific progress, and organizational activities are described. The scientific focus of this annual report is in three areas: first, the physics of particle acceleration and transport, including heliospheric modulation and transport, shock acceleration and galactic propagation and reacceleration of cosmic rays; second, the development of theories of the interaction of turbulence and large scale plasma and magnetic field structures, as in winds and shocks; third, the elucidation of the nature of magnetohydrodynamic turbulence processes and the role such turbulence processes might play in heliospheric, galactic, cosmic ray physics, and other space physics applications.

  9. Momentum and particle transport in a nonhomogenous canopy

    NASA Astrophysics Data System (ADS)

    Gould, Andrew W.

    Turbulent particle transport through the air plays an important role in the life cycle of many plant pathogens. In this study, data from a field experiment was analyzed to explore momentum and particle transport within a grape vineyard. The overall goal of these experiments was to understand how the architecture of a sparse agricultural canopy interacts with turbulent flow and ultimately determines the dispersion of airborne fungal plant pathogens. Turbulence in the vineyard canopy was measured using an array of four sonic anemometers deployed at heights z/H 0.4, 0.9, 1.45, and 1.95 where z is the height of the each sonic and H is the canopy height. In addition to turbulence measurements from the sonic anemometers, particle dispersion was measured using inert particles with the approximate size and density of powdery mildew spores and a roto-rod impaction trap array. Measurements from the sonic anemometers demonstrate that first and second order statistics of the wind field are dependent on wind direction orientation with respect to vineyard row direction. This dependence is a result of wind channeling which transfers energy between the velocity components when the wind direction is not aligned with the rows. Although the winds have a strong directional dependence, spectra analysis indicates that the structure of the turbulent flow is not fundamentally altered by the interaction between wind direction and row direction. Examination of a limited number of particle release events indicates that the wind turning and channeling observed in the momentum field impacts particle dispersion. For row-aligned flow, particle dispersion in the direction normal to the flow is decreased relative to the plume spread predicted by a standard Gaussian plume model. For flow that is not aligned with the row direction, the plume is found to rotate in the same manner as the momentum field.

  10. Dust particle diffusion in ion beam transport region

    SciTech Connect

    Miyamoto, N.; Okajima, Y.; Romero, C. F.; Kuwata, Y.; Kasuya, T.; Wada, M.

    2016-02-15

    Dust particles of μm size produced by a monoplasmatron ion source are observed by a laser light scattering. The scattered light signal from an incident laser at 532 nm wavelength indicates when and where a particle passes through the ion beam transport region. As the result, dusts with the size more than 10 μm are found to be distributed in the center of the ion beam, while dusts with the size less than 10 μm size are distributed along the edge of the ion beam. Floating potential and electron temperature at beam transport region are measured by an electrostatic probe. This observation can be explained by a charge up model of the dust in the plasma boundary region.

  11. Recent advances in neutral particle transport methods and codes

    NASA Astrophysics Data System (ADS)

    Azmy, Yousry Y.

    1997-02-01

    An overview of Oak Ridge National Laboratory's (ORNL) 3D neural particle transport code, TORT, is presented. Special features of the code that make it invaluable for large applications are summarized for the prospective user. Advanced capabilities currently under development and installation in the production release of TORT are discussed in some detail. These include: multitasking on Cray platforms running the UNICOS operating system; adjacent-cell preconditioning acceleration scheme; and graphics codes for displaying computed quantities such as the flux. Further developments for TORT and its companion codes to enhance its present capabilities, as well as expand its range of applications will be discussed. Speculation on the next generation of neutral particle transport codes at ORNL, especially regarding unstructured grids and high order spatial approximations, will also be mentioned.

  12. Particle Swarm Transport across the Fracture-Matrix Interface

    NASA Astrophysics Data System (ADS)

    Malenda, M. G.; Pyrak-Nolte, L. J.

    2016-12-01

    A fundamental understanding of particle transport is required for many diverse applications such as effective proppant injection, for deployment of subsurface imaging micro-particles, and for removal of particulate contaminants from subsurface water systems. One method of particulate transport is the use of particle swarms that act as coherent entities. Previous work found that particle swarms travel farther and faster in single fractures than individual particles when compared to dispersions and emulsions. In this study, gravity-driven experiments were performed to characterize swarm transport across the fracture-matrix interface. Synthetic porous media with a horizontal fracture were created from layers of square-packed 3D printed (PMMA) spherical grains (12 mm diameter). The minimum fracture aperture ranged from 0 - 10 mm. Swarms (5 and 25 µL) were composed of 3.2 micron diameter fluorescent polystryene beads (1-2% by mass). Swarms were released into a fractured porous medium that was submerged in water and was illuminated with a green (528 nm) LED array. Descending swarms were imaged with a CCD camera (2 fps). Whether an intact swarm was transported across a fracture depended on the volume of the swarm, the aperture of the fracture, and the alignment of pores on the two fracture walls. Large aperture fractures caused significant deceleration of a swarm because the swarm was free to expand laterally in the fracture. Swarms tended to remain intact when the pores on the two fracture walls were vertically aligned and traveled in the lower porous medium with speeds that were 30%-50% of their original speed in the upper matrix. When the pores on opposing walls were no longer aligned, swarms were observed to bifurcate around the grain into two smaller slower-moving swarms. Understanding the physics of particle swarms in fractured porous media has important implications for enhancing target particulate injection into the subsurface as well as for contaminant

  13. Gyrokinetics Simulation of Energetic Particle Turbulence and Transport

    SciTech Connect

    Diamond, Patrick H.

    2011-09-21

    Progress in research during this year elucidated the physics of precession resonance and its interaction with radial scattering to form phase space density granulations. Momentum theorems for drift wave-zonal flow systems involving precession resonance were derived. These are directly generalizable to energetic particle modes. A novel nonlinear, subcritical growth mechanism was identified, which has now been verified by simulation. These results strengthen the foundation of our understanding of transport in burning plasmas

  14. Particle Transport by Rapid Vaporization of Superheated Liquid.

    NASA Astrophysics Data System (ADS)

    Sugioka, Ichiro

    Superheated liquid vaporizing explosively in a particle bed inside a cylindrical test cell has been studied using a rapid depressurization apparatus. The experiments provide insights into the explosive vaporization phenomenon and the multiphase flow which is generated by the rapid production of vapor. Inside the sealed test cell, spherical glass particles are immersed in a volatile liquid, Refrigerant 12 or 114 at 300K. When the diaphragm at the upper end of the test cell is ruptured, the liquid pressure is reduced to a predetermined pressure within milliseconds. Since the liquid temperature is higher than the boiling temperature at reduced pressure, the liquid achieves a superheated state and nucleate boiling begins among the particles. The particle-liquid-vapor flow produced by the rapid release of vapor has been found to differ depending on whether the pressure is reduced below a critical level, which is 55% of the vapor pressure in the experiments conducted. When the final pressure is greater than critical, vapor pockets continue to grow throughout the particle bed and displace a liquid-particles mixture out from the test cell. When the final pressure is below critical, the particles are dispersed by a wave -like phenomenon (disruption front) where explosive vaporization appears to be localized in a narrow region. A disruption front in R12 travels at about 380 cm/s, and at about 200 cm/s in R114. Experiments have been performed at various conditions to study the vaporization and transport process. High -speed cinematography and fast-response pressure gauges have provided data on the particle acceleration process. The inertial effect on particle acceleration has been studied by conducting similar experiments in a centrifuge. Using this data, the transport process associated with the disruption front has been examined in detail. An empirical relationship between the particle weight and viscous drag is presented for this particular case. This study concludes with

  15. Particle transport by rapid vaporization of superheated liquid

    NASA Astrophysics Data System (ADS)

    Sugioka, Ichiro

    Superheated liquid vaporizing explosively in a particle bed inside a cylindrical test cell has been studied using a rapid depressurization apparatus. The experiments provide insights into the explosive vaporization phenomenon and the multiphase flow which is generated by the rapid production of vapor.Inside the sealed test cell, spherical glass particles are immersed in a volatile liquid, Refrigerant 12 or 114 at 300K. When the diaphragm at the upper end of the test cell is ruptured, the liquid pressure is reduced to a predetermined pressure within milliseconds. Since the liquid temperature is higher than the boiling temperature at reduced pressure, the liquid achieves a superheated state and nucleate boiling begins among the particles. The particle-liquid-vapor flow produced by the rapid release of vapor has been found to differ depending on whether the pressure is reduced below a critical level, which is 55% of the vapor pressure in the experiments conducted. When the final pressure is greater than critical, vapor pockets continue to grow throughout the particle bed and displace a liquid-particles mixture out from the test cell. When the final pressure is below critical, the particles are dispersed by a wave-like phenomenon (disruption front) where explosive vaporization appears to be localized in a narrow region. A disruption front in R12 travels at about 380 cm/s, and at about 200 cm/s in R114.Experiments have been performed at various conditions to study the vaporization and transport process. High-speed cinematography and fast response pressure gauges have provided data on the particle acceleration process. The inertial effect on particle acceleration has been studied by conducting similar experiments in a centrifuge. Using this data, the transport process associated with the disruption front has been examined in detail. An empirical relationship between the particle weight and viscous drag is presented for this particular case. This study concludes with

  16. Particle transport in pellet fueled JET (Jet European Torus) plasmas

    SciTech Connect

    Baylor, L.R.

    1990-01-01

    Pellet fueling experiments have been carried out on the Joint European Torus (JET) tokamak with a multi-pellet injector. The pellets are injected at speeds approaching 1400 m/s and penetrate deep into the JET plasma. Highly peaked electron density profiles are achieved when penetration of the pellets approaches or goes beyond the magnetic axis, and these peaked profiles persist for more than two seconds in ohmic discharges and over one second in ICRF heated discharges. In this dissertation, analysis of electron particle transport in multi-pellet fueled JET limiter plasmas under a variety of heating conditions is described. The analysis is carried out with a one and one-half dimensional radial particle transport code to model the experimental density evolution with various particle transport coefficients. These analyses are carried out in plasmas with ohmic heating, ICRF heating, and neural beam heating, in limiter configurations. Peaked density profile cases are generally characterized by diffusion coefficients with a central (r/a < 0.5) diffusivity {approximately}0.1 m{sup 2}/s that increases rapidly to {approximately}0.3 m{sup 2}/s at r/a = 0.6 and then increases out to the plasma edge as (r/a){sup 2}. These discharges can be satisfactorily modeled without any anomalous convective (pinch) flux. 79 refs., 60 figs.

  17. Chemically generated convective transport of micron sized particles

    NASA Astrophysics Data System (ADS)

    Shklyaev, Oleg; Das, Sambeeta; Altemose, Alicia; Shum, Henry; Balazs, Anna; Sen, Ayusman

    2015-11-01

    A variety of chemical and biological applications require manipulation of micron sized objects like cells, viruses, and large molecules. Increasing the size of particles up to a micron reduces performance of techniques based on diffusive transport. Directional transport of cargo toward detecting elements reduces the delivery time and improves performance of sensing devices. We demonstrate how chemical reactions can be used to organize fluid flows carrying particles toward the assigned destinations. Convection is driven by density variations caused by a chemical reaction occurring at a catalyst or enzyme-covered target site. If the reaction causes a reduction in fluid density, as in the case of catalytic decomposition of hydrogen peroxide, then fluid and suspended cargo is drawn toward the target along the bottom surface. The intensity of the fluid flow and the time of cargo delivery are controlled by the amount of reagent in the system. After the reagent has been consumed, the fluid pump stops and particles are found aggregated on and around the enzyme-coated patch. The pumps are reusable, being reactivated upon injection of additional reagent. The developed technique can be implemented in lab-on-a-chip devices for transportation of micro-scale object immersed in solution.

  18. Adaptive Multilevel Splitting for Monte Carlo particle transport

    NASA Astrophysics Data System (ADS)

    Louvin, Henri; Dumonteil, Eric; Lelièvre, Tony; Rousset, Mathias; Diop, Cheikh M.

    2017-09-01

    In the Monte Carlo simulation of particle transport, and especially for shielding applications, variance reduction techniques are widely used to help simulate realisations of rare events and reduce the relative errors on the estimated scores for a given computation time. Adaptive Multilevel Splitting is one of these variance reduction techniques that has recently appeared in the literature. In the present paper, we propose an alternative version of the AMS algortihm, adapted for the first time to the field of particle tranport. Within this context, it can be used to build an unbiased estimator of any quantity associated with particle tracks, such as flux, reaction rates or even non-Boltzmann tallies. Furthermore, the effciency of the AMS algorithm is shown not to be very sensitive to variations of its input parameters, which makes it capable of significant variance reduction without requiring extended user effort.

  19. Quasilinear Line Broadened Model for Energetic Particle Transport

    NASA Astrophysics Data System (ADS)

    Ghantous, Katy; Gorelenkov, Nikolai; Berk, Herbert

    2011-10-01

    We present a self-consistent quasi-linear model that describes wave-particle interaction in toroidal geometry and computes fast ion transport during TAE mode evolution. The model bridges the gap between single mode resonances, where it predicts the analytically expected saturation levels, and the case of multiple modes overlapping, where particles diffuse across phase space. Results are presented in the large aspect ratio limit where analytic expressions are used for Fourier harmonics of the power exchange between waves and particles, . Implemention of a more realistic mode structure calculated by NOVAK code are also presented. This work is funded by DOE contract DE-AC02-09CH11466.

  20. Simulation of Cell Adhesion using a Particle Transport Model

    NASA Astrophysics Data System (ADS)

    Chesnutt, Jennifer

    2005-11-01

    An efficient computational method for simulation of cell adhesion through protein binding forces is discussed. In this method, the cells are represented by deformable elastic particles, and the protein binding is represented by a rate equation. The method is first developed for collision and adhesion of two similar cells impacting on each other from opposite directions. The computational method is then applied in a particle-transport model for a cloud of interacting and colliding cells, each of which are represented by particles of finite size. One application might include red blood cells adhering together to form rouleaux, which are chains of red blood cells that are found in different parts of the circulatory system. Other potential applications include adhesion of platelets to a blood vessel wall or mechanical heart valve, which is a precursor of thrombosis formation, or adhesion of cancer cells to organ walls in the lymphatic, circulatory, digestive or pulmonary systems.

  1. Particle Tracking Model and Abstraction of Transport Processes

    SciTech Connect

    B. Robinson

    2004-10-21

    The purpose of this report is to document the abstraction model being used in total system performance assessment (TSPA) model calculations for radionuclide transport in the unsaturated zone (UZ). The UZ transport abstraction model uses the particle-tracking method that is incorporated into the finite element heat and mass model (FEHM) computer code (Zyvoloski et al. 1997 [DIRS 100615]) to simulate radionuclide transport in the UZ. This report outlines the assumptions, design, and testing of a model for calculating radionuclide transport in the UZ at Yucca Mountain. In addition, methods for determining and inputting transport parameters are outlined for use in the TSPA for license application (LA) analyses. Process-level transport model calculations are documented in another report for the UZ (BSC 2004 [DIRS 164500]). Three-dimensional, dual-permeability flow fields generated to characterize UZ flow (documented by BSC 2004 [DIRS 169861]; DTN: LB03023DSSCP9I.001 [DIRS 163044]) are converted to make them compatible with the FEHM code for use in this abstraction model. This report establishes the numerical method and demonstrates the use of the model that is intended to represent UZ transport in the TSPA-LA. Capability of the UZ barrier for retarding the transport is demonstrated in this report, and by the underlying process model (BSC 2004 [DIRS 164500]). The technical scope, content, and management of this report are described in the planning document ''Technical Work Plan for: Unsaturated Zone Transport Model Report Integration'' (BSC 2004 [DIRS 171282]). Deviations from the technical work plan (TWP) are noted within the text of this report, as appropriate. The latest version of this document is being prepared principally to correct parameter values found to be in error due to transcription errors, changes in source data that were not captured in the report, calculation errors, and errors in interpretation of source data.

  2. Transport of Particle Swarms Through Variable Aperture Fractures

    NASA Astrophysics Data System (ADS)

    Boomsma, E.; Pyrak-Nolte, L. J.

    2012-12-01

    Particle transport through fractured rock is a key concern with the increased use of micro- and nano-size particles in consumer products as well as from other activities in the sub- and near surface (e.g. mining, industrial waste, hydraulic fracturing, etc.). While particle transport is often studied as the transport of emulsions or dispersions, particles may also enter the subsurface from leaks or seepage that lead to particle swarms. Swarms are drop-like collections of millions of colloidal-sized particles that exhibit a number of unique characteristics when compared to dispersions and emulsions. Any contaminant or engineered particle that forms a swarm can be transported farther, faster, and more cohesively in fractures than would be expected from a traditional dispersion model. In this study, the effects of several variable aperture fractures on colloidal swarm cohesiveness and evolution were studied as a swarm fell under gravity and interacted with the fracture walls. Transparent acrylic was used to fabricate synthetic fracture samples with (1) a uniform aperture, (2) a converging region followed by a uniform region (funnel shaped), (3) a uniform region followed by a diverging region (inverted funnel), and (4) a cast of a an induced fracture from a carbonate rock. All of the samples consisted of two blocks that measured 100 x 100 x 50 mm. The minimum separation between these blocks determined the nominal aperture (0.5 mm to 20 mm). During experiments a fracture was fully submerged in water and swarms were released into it. The swarms consisted of a dilute suspension of 3 micron polystyrene fluorescent beads (1% by mass) with an initial volume of 5μL. The swarms were illuminated with a green (525 nm) LED array and imaged optically with a CCD camera. The variation in fracture aperture controlled swarm behavior. Diverging apertures caused a sudden loss of confinement that resulted in a rapid change in the swarm's shape as well as a sharp increase in its velocity

  3. Particle Simulations of DARHT-II Transport System

    SciTech Connect

    Poole, B; Chen, Y J

    2001-06-11

    The DARHT-II beam line utilizes a fast stripline kicker to temporally chop a high current electron beam from a single induction LINAC and deliver multiple temporal electron beam pulses to an x-ray converter target. High beam quality needs to be maintained throughout the transport line from the end of the accelerator through the final focus lens to the x-ray converter target to produce a high quality radiographic image. Issues that will affect beam quality such as spot size and emittance at the converter target include dynamic effects associated with the stripline kicker as well as emittance growth due to the nonlinear forces associated with the kicker and various focusing elements in the transport line. In addition, dynamic effects associated with transverse resistive wall instability as well as gas focusing will affect the beam transport. A particle-in-cell code is utilized to evaluate beam transport in the downstream transport line in DARHT-II. External focusing forces are included utilizing either analytic expressions or field maps. Models for wakefields from the beam kicker, transverse resistive wall instability, and gas focusing are included in the simulation to provide a more complete picture of beam transport in DARHT-II. From these simulations, for various initial beam loads based on expected accelerator performance the temporally integrated target spot size and emittance can be estimated.

  4. Characterization of molecule and particle transport through nanoscale conduits

    NASA Astrophysics Data System (ADS)

    Alibakhshi, Mohammad Amin

    Nanofluidic devices have been of great interest due to their applications in variety of fields, including energy conversion and storage, water desalination, biological and chemical separations, and lab-on-a-chip devices. Although these applications cross the boundaries of many different disciplines, they all share the demand for understanding transport in nanoscale conduits. In this thesis, different elusive aspects of molecule and particle transport through nanofluidic conduits are investigated, including liquid and ion transport in nanochannels, diffusion- and reaction-governed enzyme transport in nanofluidic channels, and finally translocation of nanobeads through nanopores. Liquid or solvent transport through nanoconfinements is an essential yet barely characterized component of any nanofluidic systems. In the first chapter, water transport through single hydrophilic nanochannels with heights down to 7 nm is experimentally investigated using a new measurement technique. This technique has been developed based on the capillary flow and a novel hybrid nanochannel design and is capable of characterizing flow in both single nanoconduits as well as nanoporous media. The presence of a 0.7 nm thick hydration layer on hydrophilic surfaces and its effect on increasing the hydraulic resistance of the nanochannels is verified. Next, ion transport in a new class of nanofluidic rectifiers is theoretically and experimentally investigated. These so called nanofluidic diodes are nanochannels with asymmetric geometries which preferentially allow ion transport in one direction. A nondimensional number as a function of electrolyte concentration, nanochannel dimensions, and surface charge is derived that summarizes the rectification behavior of this system. In the fourth chapter, diffusion- and reaction-governed enzyme transport in nanofluidic channels is studied and the theoretical background necessary for understanding enzymatic activity in nanofluidic channels is presented. A

  5. PAHs loadings of particles as tracer for origin and transport dynamics of particles in river networks

    NASA Astrophysics Data System (ADS)

    Schwientek, Marc; Hermann, Rügner; Bennett, Jeremy-Paul; Grathwohl, Peter

    2015-04-01

    Transport of many urban pollutants in rivers is coupled to transport of suspended particles, potentially dominated by storm water overflows and mobilization of legacy contamination of sediments. Concentration of these pollutants depends on the mixture of "polluted" urban and "clean" background particles. In the current study, the total concentration of polycyclic aromatic hydrocarbons (PAHs) and the amount of total suspended solids (TSS) were meaured in the course of pronounced flood events in 3 catchments with contrast¬ing land use in Southwest Germany. Average PAHs loadings were calculated based on linear regressions of total PAHs concentrations versus TSS. For single samples PAHs loadings were estimated based on PAHs/TSS quotients. Average loadings are characteristic for each catchment and represent the number of inhabitants within the catchment per load of suspended sediment. The absence of significant long-term trends or pronounced changes of the catchment-specific loadings indicate that either input and output of PAHs into the stream networks are largely at steady state or that storage of PAHs in the sediments within the stream network are sufficient to smooth out larger fluctuations. Sampling at high temporal resolution during flood events revealed that loadings do show some short-term fluctuations and, additionally, that loadings show generally slightly decreasing trends during flood events. This is attributed to temporally and spatially varying contributions of particle inputs from sewer overflows and subcatchments which causes a changing proportion of urban and background particles. The decreasing trend is interpreted as the existence of a PAHs storage within the stream network and a slowly depletion therof in PAHs by the inputs of fresh particles in the course of the events. To better understand origin, transport and storage of contaminated particles, also metals, total organic carbon and carbonate content were measured for suspended particles

  6. Measurement of particle transport coefficients on Alcator C-Mod

    SciTech Connect

    Luke, T.C.T.

    1994-10-01

    The goal of this thesis was to study the behavior of the plasma transport during the divertor detachment in order to explain the central electron density rise. The measurement of particle transport coefficients requires sophisticated diagnostic tools. A two color interferometer system was developed and installed on Alcator C-Mod to measure the electron density with high spatial ({approx} 2 cm) and high temporal ({le} 1.0 ms) resolution. The system consists of 10 CO{sub 2} (10.6 {mu}m) and 4 HeNe (.6328 {mu}m) chords that are used to measure the line integrated density to within 0.08 CO{sub 2} degrees or 2.3 {times} 10{sup 16}m{sup {minus}2} theoretically. Using the two color interferometer, a series of gas puffing experiments were conducted. The density was varied above and below the threshold density for detachment at a constant magnetic field and plasma current. Using a gas modulation technique, the particle diffusion, D, and the convective velocity, V, were determined. Profiles were inverted using a SVD inversion and the transport coefficients were extracted with a time regression analysis and a transport simulation analysis. Results from each analysis were in good agreement. Measured profiles of the coefficients increased with the radius and the values were consistent with measurements from other experiments. The values exceeded neoclassical predictions by a factor of 10. The profiles also exhibited an inverse dependence with plasma density. The scaling of both attached and detached plasmas agreed well with this inverse scaling. This result and the lack of change in the energy and impurity transport indicate that there was no change in the underlying transport processes after detachment.

  7. Charged Particle Energization and Transport in the Magnetotail during Substorms

    NASA Astrophysics Data System (ADS)

    Pan, Qingjiang

    This dissertation addresses the problem of energization of particles (both electrons and ions) to tens and hundreds of keV and the associated transport process in the magnetotail during substorms. Particles energized in the magnetotail are further accelerated to even higher energies (hundreds of keV to MeV) in the radiation belts, causing space weather hazards to human activities in space and on ground. We develop an analytical model to quantitatively estimate flux changes caused by betatron and Fermi acceleration when particles are transported along narrow high-speed flow channels from the magnetotail to the inner magnetosphere. The model shows that energetic particle flux can be significantly enhanced by a modest compression of the magnetic field and/or shrinking of the distance between the magnetic mirror points. We use coordinated spacecraft measurements, global magnetohydrodynamic (MHD) simulations driven by measured upstream solar wind conditions, and large-scale kinetic (LSK) simulations to quantify electron local acceleration in the near-Earth reconnection region and nonlocal acceleration during plasma earthward transport. Compared to the analytical model, application of the LSK simulations is much less restrictive because trajectories of millions of test particles are calculated in the realistically determined global MHD fields and the results are statistical. The simulation results validated by the observations show that electrons following a power law distribution at high energies are generated earthward of the reconnection site, and that the majority of the energetic electrons observed in the inner magnetosphere are caused by adiabatic acceleration in association with magnetic dipolarizations and fast flows during earthward transport. We extend the global MHD+LSK simulations to examine ion energization and compare it with electron energization. The simulations demonstrate that ions in the magnetotail are first nonadiabatically accelerated in the weak

  8. Particle transport in 3 He-rich events: wave-particle interactions and particle anisotropy measurements

    NASA Astrophysics Data System (ADS)

    Tsurutani, B. T.; Zhang, L. D.; Mason, G. L.; Lakhina, G. S.; Hada, T.; Arballo, J. K.; Zwickl, R. D.

    2002-04-01

    Energetic particles and MHD waves are studied using simultaneous ISEE-3 data to investigate particle propagation and scattering between the source near the Sun and 1 AU. 3 He-rich events are of particular interest because they are typically low intensity "scatter-free" events. The largest solar proton events are of interest because they have been postulated to generate their own waves through beam instabilities. For 3 He-rich events, simultaneous interplanetary magnetic spectra are measured. The intensity of the interplanetary "fossil" turbulence through which the particles have traversed is found to be at the "quiet" to "intermediate" level of IMF activity. Pitch angle scattering rates and the corresponding particle mean free paths l

  9. Particle Communication and Domain Neighbor Coupling: Scalable Domain Decomposed Algorithms for Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, M. J.; Brantley, P. S.

    2015-01-20

    In order to run Monte Carlo particle transport calculations on new supercomputers with hundreds of thousands or millions of processors, care must be taken to implement scalable algorithms. This means that the algorithms must continue to perform well as the processor count increases. In this paper, we examine the scalability of:(1) globally resolving the particle locations on the correct processor, (2) deciding that particle streaming communication has finished, and (3) efficiently coupling neighbor domains together with different replication levels. We have run domain decomposed Monte Carlo particle transport on up to 221 = 2,097,152 MPI processes on the IBM BG/Q Sequoia supercomputer and observed scalable results that agree with our theoretical predictions. These calculations were carefully constructed to have the same amount of work on every processor, i.e. the calculation is already load balanced. We also examine load imbalanced calculations where each domain’s replication level is proportional to its particle workload. In this case we show how to efficiently couple together adjacent domains to maintain within workgroup load balance and minimize memory usage.

  10. A concurrent vector-based steering framework for particle transport

    NASA Astrophysics Data System (ADS)

    Apostolakis, John; Brun, René; Carminati, Federico; Gheata, Andrei; Wenzel, Sandro

    2014-06-01

    High Energy Physics has traditionally been a technology-limited science that has pushed the boundaries of both the detectors collecting the information about the particles and the computing infrastructure processing this information. However, since a few years the increase in computing power comes in the form of increased parallelism at all levels, and High Energy Physics has now to optimise its code to take advantage of the new architectures, including GPUs and hybrid systems. One of the primary targets for optimisation is the particle transport code used to simulate the detector response, as it is largely experiment independent and one of the most demanding applications in terms of CPU resources. The Geant Vector Prototype project aims to explore innovative designs in particle transport aimed at obtaining maximal performance on the new architectures. This paper describes the current status of the project and its future perspectives. In particular we describe how the present design tries to expose the parallelism of the problem at all possible levels, in a design that is aimed at minimising contentions and maximising concurrency, both at the coarse granularity level (threads) and at the micro granularity one (vectorisation, instruction pipelining, multiple instructions per cycle). The future plans and perspectives will also be mentioned.

  11. Parallelization of a Monte Carlo particle transport simulation code

    NASA Astrophysics Data System (ADS)

    Hadjidoukas, P.; Bousis, C.; Emfietzoglou, D.

    2010-05-01

    We have developed a high performance version of the Monte Carlo particle transport simulation code MC4. The original application code, developed in Visual Basic for Applications (VBA) for Microsoft Excel, was first rewritten in the C programming language for improving code portability. Several pseudo-random number generators have been also integrated and studied. The new MC4 version was then parallelized for shared and distributed-memory multiprocessor systems using the Message Passing Interface. Two parallel pseudo-random number generator libraries (SPRNG and DCMT) have been seamlessly integrated. The performance speedup of parallel MC4 has been studied on a variety of parallel computing architectures including an Intel Xeon server with 4 dual-core processors, a Sun cluster consisting of 16 nodes of 2 dual-core AMD Opteron processors and a 200 dual-processor HP cluster. For large problem size, which is limited only by the physical memory of the multiprocessor server, the speedup results are almost linear on all systems. We have validated the parallel implementation against the serial VBA and C implementations using the same random number generator. Our experimental results on the transport and energy loss of electrons in a water medium show that the serial and parallel codes are equivalent in accuracy. The present improvements allow for studying of higher particle energies with the use of more accurate physical models, and improve statistics as more particles tracks can be simulated in low response time.

  12. Overview of Particle and Heavy Ion Transport Code System PHITS

    NASA Astrophysics Data System (ADS)

    Sato, Tatsuhiko; Niita, Koji; Matsuda, Norihiro; Hashimoto, Shintaro; Iwamoto, Yosuke; Furuta, Takuya; Noda, Shusaku; Ogawa, Tatsuhiko; Iwase, Hiroshi; Nakashima, Hiroshi; Fukahori, Tokio; Okumura, Keisuke; Kai, Tetsuya; Chiba, Satoshi; Sihver, Lembit

    2014-06-01

    A general purpose Monte Carlo Particle and Heavy Ion Transport code System, PHITS, is being developed through the collaboration of several institutes in Japan and Europe. The Japan Atomic Energy Agency is responsible for managing the entire project. PHITS can deal with the transport of nearly all particles, including neutrons, protons, heavy ions, photons, and electrons, over wide energy ranges using various nuclear reaction models and data libraries. It is written in Fortran language and can be executed on almost all computers. All components of PHITS such as its source, executable and data-library files are assembled in one package and then distributed to many countries via the Research organization for Information Science and Technology, the Data Bank of the Organization for Economic Co-operation and Development's Nuclear Energy Agency, and the Radiation Safety Information Computational Center. More than 1,000 researchers have been registered as PHITS users, and they apply the code to various research and development fields such as nuclear technology, accelerator design, medical physics, and cosmic-ray research. This paper briefly summarizes the physics models implemented in PHITS, and introduces some important functions useful for specific applications, such as an event generator mode and beam transport functions.

  13. Production and global transport of Titan's sand particles

    NASA Astrophysics Data System (ADS)

    Barnes, Jason W.; Lorenz, Ralph D.; Radebaugh, Jani; Hayes, Alexander G.; Arnold, Karl; Chandler, Clayton

    2015-06-01

    Previous authors have suggested that Titan's individual sand particles form by either sintering or by lithification and erosion. We suggest two new mechanisms for the production of Titan's organic sand particles that would occur within bodies of liquid: flocculation and evaporitic precipitation. Such production mechanisms would suggest discrete sand sources in dry lakebeds. We search for such sources, but find no convincing candidates with the present Cassini Visual and Infrared Mapping Spectrometer coverage. As a result we propose that Titan's equatorial dunes may represent a single, global sand sea with west-to-east transport providing sources and sinks for sand in each interconnected basin. The sand might then be transported around Xanadu by fast-moving Barchan dune chains and/or fluvial transport in transient riverbeds. A river at the Xanadu/Shangri-La border could explain the sharp edge of the sand sea there, much like the Kuiseb River stops the Namib Sand Sea in southwest Africa on Earth. Future missions could use the composition of Titan's sands to constrain the global hydrocarbon cycle.

  14. Dust-Particle Transport in Tokamak Edge Plasmas

    SciTech Connect

    Pigarov, A Y; Krasheninnikov, S I; Soboleva, T K; Rognlien, T D

    2005-09-12

    Dust particulates in the size range of 10nm-100{micro}m are found in all fusion devices. Such dust can be generated during tokamak operation due to strong plasma/material-surface interactions. Some recent experiments and theoretical estimates indicate that dust particles can provide an important source of impurities in the tokamak plasma. Moreover, dust can be a serious threat to the safety of next-step fusion devices. In this paper, recent experimental observations on dust in fusion devices are reviewed. A physical model for dust transport simulation, and a newly developed code DUSTT, are discussed. The DUSTT code incorporates both dust dynamics due to comprehensive dust-plasma interactions as well as the effects of dust heating, charging, and evaporation. The code tracks test dust particles in realistic plasma backgrounds as provided by edge-plasma transport codes. Results are presented for dust transport in current and next-step tokamaks. The effect of dust on divertor plasma profiles and core plasma contamination is examined.

  15. Evaluation of Baltic Sea transport properties using particle tracking

    NASA Astrophysics Data System (ADS)

    Dargahi, Bijan; Cvetkovic, Vladimir

    2014-05-01

    Particle tracking model (PTM) is an effective tool for quantifying transport properties of large water bodies such as the Baltic Sea. We have applied PTM to our fully calibrated and validated Baltic Sea 3D hydrodynamic model for a 10-years period (2000-9). One hundred particles were released at a constant rate during an initial 10-days period from all the Baltic Sea sub-basins, the major rivers, and the open boundary in the Arkona Basin. In each basin, the particles were released at two different depths corresponding to the deep water and middle water layers. The objectives of the PTM simulations were to analyse the intra-exchange processes between the Baltic Sea basins and to estimate the arrival times and the paths of particles released from the rivers. The novel contribution of this study is determining the paths and arrival times of deeper water masses rather than the surface masses. Advective and diffusive transport processes in the Bornholm and Arkona basins are both driven by the interacting flows of the northern basins of the Baltic Sea and the North Sea. Particles released from Arkona basin flows northwards along the Stople Channel. The Gotland basins are the major contributors to the exchange process in the Baltic Sea. We find high values of the advection ratio, indicative of a forced advective transport process. The Bay of Gdansk is probably the most vulnerable region in the Baltic Sea. This is despite the fact that the main exchanging basins are the Bornholm Sea and the Easter Gotland Basin. The main reason is the intensive supply of the particles from the northern basins that normally take about 3000 days to reach the Bay of Gdansk. The process maintains a high level of particle concentration (90%) along its coastlines even after the 10-years period. Comparing the particle paths in the Western and Eastern Gotland basins two interesting features were found. Particles travelled in all four directions in the former basin and the middle layer particles

  16. Size segregation in bedload sediment transport at the particle scale

    NASA Astrophysics Data System (ADS)

    Frey, P.; Martin, T.

    2011-12-01

    Bedload, the larger material that is transported in stream channels, has major consequences, for the management of water resources, for environmental sustainability, and for flooding alleviation. Most particularly, in mountains, steep slopes drive intense transport of a wide range of grain sizes. Our ability to compute local and even bulk quantities such as the sediment flux in rivers is poor. One important reason is that grain-grain interactions in stream channels may have been neglected. An arguably most important difficulty pertains to the very wide range of grain size leading to grain size sorting or segregation. This phenomenon largely modifies fluxes and results in patterns that can be seen ubiquitously in nature such as armoring or downstream fining. Most studies have concerned the spontaneous percolation of fine grains into immobile gravels, because of implications for salmonid spawning beds, or stratigraphical interpretation. However when the substrate is moving, the segregation process is different as statistically void openings permit downward percolation of larger particles. This process also named "kinetic sieving" has been studied in industrial contexts where segregation of granular or powder materials is often non-desirable. We present an experimental study of two-size mixtures of coarse spherical glass beads entrained by a shallow turbulent and supercritical water flow down a steep channel with a mobile bed. The particle diameters were 4 and 6mm, the channel width 6.5mm and the channel inclination ranged from 7.5 to 12.5%. The water flow rate and the particle rate were kept constant at the upstream entrance. First only the coarser particle rate was input and adjusted to obtain bed load equilibrium, that is, neither bed degradation nor aggradation over sufficiently long time intervals. Then a low rate of smaller particles (about 1% of the total sediment rate) was introduced to study the spatial and temporal evolution of segregating smaller particles

  17. Three-particle correlations in a multiphase transport model

    DOE PAGES

    Sun, Yifeng; Ko, Che Ming

    2017-03-31

    Here, we study three-particle mixed harmonic correlations in relativistic heavy ion collisions by considering the observable Cm,n,m+n= cos(mφ1+nφ2-(m +n)φ3), where φ1,2,3 are azimuthal angles of all particle triplets, using a multiphase transport model. We find that except for C123, these results on the centrality dependence of C112, C224 and C235 as well as the relative pseudorapidity dependence of C123 and C224 in Au+Au collisions at √s=200 GeV agree reasonable well with the experimental data from the STAR Collaboration. We also discuss the implications of our results.

  18. Field-aligned Transport and Acceleration of Solar Energetic Particles

    NASA Astrophysics Data System (ADS)

    Borovikov, D.; Sokolov, I.; Tenishev, V.; Gombosi, T. I.

    2015-12-01

    Solar Energetic Particle (SEP) phenomena represent one of the major components of space weather. Often, but not exclusively associated with Coronal Mass Ejections (CMEs), they pose a significant scientific as well as practical interest. As these particles originate at such explosive events, they have energies up to several GeV. SEP may cause disruptions in operations of space instruments and spacecrafts and are dangerous to astronauts. For this reason, studies of SEP events and predictions of their impact are of great importance. The motion and acceleration of SEP, though kinetic in nature, is governed by Interplanetary Magnetic Field (IMF) and its disturbances. Therefore, a consistent and accurate simulation and predictive tool must include a realistic MHD model of IMF. At the same time, transport of SEP is essentially one-dimensional as at high energies particles are tied to magnetic field lines. This allows building a model that can effectively map active regions on the solar surface onto various regions of the Solar System thus predicting the affected regions of the at any distance from the Sun. We present the first attempt to construct a model that employs coupling of MHD and kinetic models. The former describes the evolution of IMF disturbed by CME, while the latter simulates particles moving along the field lines extracted from MHD model. The first results are provided.

  19. Transport coefficients of solid particles immersed in a viscous gas.

    PubMed

    Garzó, Vicente; Fullmer, William D; Hrenya, Christine M; Yin, Xiaolong

    2016-01-01

    Transport properties of a suspension of solid particles in a viscous gas are studied. The dissipation in such systems arises from two sources: inelasticity in particle collisions and viscous dissipation due to the effect of the gas phase on the particles. Here we consider a simplified case in which the mean relative velocity between the gas and solid phases is taken to be zero, such that "thermal drag" is the only remaining gas-solid interaction. Unlike the previous, more general, treatment of the drag force [Garzó et al., J. Fluid Mech. 712, 129 (2012)]JFLSA70022-112010.1017/jfm.2012.404, here we take into account contributions to the (scaled) transport coefficients η^{*} (shear viscosity), κ^{*} (thermal conductivity), and μ^{*} (Dufour-like coefficient) coming from the temperature dependence of the (dimensionless) friction coefficient γ^{*} characterizing the amplitude of the drag force. At moderate densities, the thermal drag model (which is based on the Enskog kinetic equation) is solved by means of the Chapman-Enskog method and the Navier-Stokes transport coefficients are determined in terms of the coefficient of restitution, the solid volume fraction, and the friction coefficient. The results indicate that the effect of the gas phase on η^{*} and μ^{*} is non-negligible (especially in the case of relatively dilute systems) while the form of κ^{*} is the same as the one obtained in the dry granular limit. Finally, as an application of these results, a linear stability analysis of the hydrodynamic equations is carried out to analyze the conditions for stability of the homogeneous cooling state. A comparison with direct numerical simulations shows a good agreement for conditions of practical interest.

  20. Modeling Single Particle Transport in Stochastic Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Hudson, Ben; Fiksel, Gennady; Prager, Stewart

    2001-10-01

    Single particle transport in a stochastic magnetic field is simulated via code ION and RIO. Developed in collaboration with a group in Novosibirsk, Russia, they simulate both single ion and multiple ion trajectories in a stochastic magnetic field. A sharp decrease in the relative diffusion of ions to magnetic field lines is seen in two gyro-radii regimes. One is explainable from the unbroken flux surfaces near the edge of the plasma. The other is thought to be due to a "gyro-averaging" effect that occurs when the gyro-radius exceeds the radial correlation length of the field lines. The simulations indicate a decrease in expected transport, most strongly as a function of gyro-radius, which will be tested experimentally with the MST neutral beam injector.

  1. From flow and particle transport modeling to vibration isolation

    NASA Astrophysics Data System (ADS)

    Ellison, Joseph Fabian

    2001-08-01

    This thesis is composed of two parts. Part I is devoted to the analysis of particle transport and deposition. In this part, flow and particle transport and deposition in a furnace and under microgravity conditions are analyzed. In the first study of Part I, fluid flow, combustion, heat and mass transfer involved in a methane/air furnace were studied. The purpose of this study was to investigate variations in the flow field and thermal conditions in the furnace and to develop methods for improving its efficiency. The analysis of the combustor model was performed using an unstructured grid model developed with the Gambit grid generator of FLUENT version 5. In the second study of Part I, particle dispersion in a liquid filled box under orbital g-jitter excitation is analyzed. The study investigated particle motion experiments that were performed aboard the orbiting shuttle. The experiments have provided confusing data as to the nature of particle dispersion in the orbital environment. To obtain a better understanding of the dynamics involved, a series of numerical simulations are performed to study the dispersion of suspended particles subject to g-jitter excitations. Part II of the thesis is devoted to the analysis of vibration and vibration isolation problems. Following along the lines of vibration effecting system performance, a study of vibration isolation used to protect avionics equipment from adverse aircraft vibration environments was conducted. Passive isolation is the simplest means to achieve this goal. The system used here consisted of a circular steel ring with a lump mass on top and exposed to base excitation. Sinusoidal and filtered zero-mean Gaussian white noise were used to excite the structure and the acceleration response spectra at the top of the ring were computed. An experiment was performed to identify the natural frequencies and modal damping of the circular ring. The polished homogeneity measurement of large optics mounted in a vertical ring

  2. Gyrokinetic Particle Simulation of Microturbulence in Transport Time Scale

    NASA Astrophysics Data System (ADS)

    Lee, W. W.

    2003-10-01

    Recent investigations on Alfven waves in gyrokinetic plasmas and their relationship with those in the MHD theory have enabled us to extend the gyrokinetic particle simulation techniques into the kinetic-MHD regime when the finite-Larmor radius effects are important and the time step restrictions imposed by compressional Alfven waves are not desirable.[1,2] Some of the numerical schemes have already been devised based on their thermodynamic properties.[1,2] Here, we propose to use gyrokinetic particle simulation to study microturbulence in transport time scale. The procedures involve the use of finite-β microturbulence simulation as well as the use of transport coefficients in the steady state for predicting density,temperature and parallel current profile changes, along with the use of perpendicular current information for the establishment of equilibrium magnetic structure. Details will be given. [1] W. W. Lee and H. Qin, Phys. Plasmas, to appear (August 2003). [2] W. W. Lee, J. L. V. Lewandowski, T. S. Hahm, and Z. Lin, Phys. Plasmas 8, 4435 (2001).

  3. Exposure visualisation of ultrafine particle counts in a transport microenvironment

    NASA Astrophysics Data System (ADS)

    Kaur, S.; Clark, R. D. R.; Walsh, P. T.; Arnold, S. J.; Colvile, R. N.; Nieuwenhuijsen, M. J.

    An increasing number of studies indicate that short-term peak exposures, such as those seen in the transport microenvironment, pose particular health threats. Short-term exposure can only be sufficiently characterised using portable, fast-response monitoring instrumentation with detailed summaries of individual activity. In this paper, we present an exposure visualisation system that addresses this issue—it allows the simultaneous presentation of mobile video imagery synchronised with measured real-time ultrafine particle count exposure of an individual. The combined data can be examined in detail for the contribution of the surrounding environment and the individual's activities to their peak and overall exposure. The exposure visualisation system is demonstrated and evaluated around the DAPPLE study site in Central London using different modes of transport (walking, cycling, bus, car and taxi). The video images, synchronised with the exposure profile, highlight the extent to which ultrafine particle exposure is associated with traffic density and proximity to pollutant source. The extremely rapid decline in concentration with increasing distance away from the pollutant source, such as from the main street to the backstreets, is clearly evident. The visualisation technique allows these data to be presented to both technical audiences and laypersons thus making it an effective environmental risk communication tool. Some exposure peaks however are not obviously associated with any event recorded on video—in these cases it will be necessary to use advanced dispersion modelling techniques to investigate meteorological conditions and other variables influencing in-street conditions to identify their possible causes.

  4. Modeling of the recycling particle flux and electron particle transport in the DIII-D tokamak

    SciTech Connect

    Baker, D.R.; Jackson, G.L.; Maingi, R.; Owen, L.W.; Porter, G.D.

    1996-10-01

    One of the most difficult aspects of performing an equilibrium particle transport analysis in a diverted tokamak is the determination of the particle flux which enters the plasma after recycling from the divertor plasma, the divertor target plates or the vessel wall. An approach which has been utilized in the past is to model the edge, scrape-off layer (SOL), and divertor plasma to match measured plasma parameters and then use a neutral transport code to obtain an edge recycling flux while trying to match the measured divertor D(x emissivity. Previous simulations were constrained by electron density (n{sub e}) and temperature (T{sub e}), ion temperature (T{sub i}) data at the outer midplane, divertor heat flux from infrared television cameras, and n{sub e}, T{sub e} and particle flux at the target from fixed Langmuir probes, along with the divertor D{sub {alpha}} emissivity. In this paper, we present results of core fueling calculations from the 2-D modeling for ELM-free discharges, constrained by data from the new divertor diagnostics. In addition, we present a simple technique for estimating the recycling flux just after the L-H transition and demonstrate how this technique is supported by the detailed modeling. We will show the effect which inaccuracies in the recycling flux have on the calculated particle flux in the plasma core. For some specific density profiles, it is possible to separate the convective flux from the conductive flux. The diffusion coefficients obtained show a sharp decrease near a normalized radius of 0.9 indicating the presence of a transport barrier.

  5. High energy electromagnetic particle transportation on the GPU

    SciTech Connect

    Canal, P.; Elvira, D.; Jun, S. Y.; Kowalkowski, J.; Paterno, M.; Apostolakis, J.

    2014-01-01

    We present massively parallel high energy electromagnetic particle transportation through a finely segmented detector on a Graphics Processing Unit (GPU). Simulating events of energetic particle decay in a general-purpose high energy physics (HEP) detector requires intensive computing resources, due to the complexity of the geometry as well as physics processes applied to particles copiously produced by primary collisions and secondary interactions. The recent advent of hardware architectures of many-core or accelerated processors provides the variety of concurrent programming models applicable not only for the high performance parallel computing, but also for the conventional computing intensive application such as the HEP detector simulation. The components of our prototype are a transportation process under a non-uniform magnetic field, geometry navigation with a set of solid shapes and materials, electromagnetic physics processes for electrons and photons, and an interface to a framework that dispatches bundles of tracks in a highly vectorized manner optimizing for spatial locality and throughput. Core algorithms and methods are excerpted from the Geant4 toolkit, and are modified and optimized for the GPU application. Program kernels written in C/C++ are designed to be compatible with CUDA and OpenCL and with the aim to be generic enough for easy porting to future programming models and hardware architectures. To improve throughput by overlapping data transfers with kernel execution, multiple CUDA streams are used. Issues with floating point accuracy, random numbers generation, data structure, kernel divergences and register spills are also considered. Performance evaluation for the relative speedup compared to the corresponding sequential execution on CPU is presented as well.

  6. Particle transport model sensitivity on wave-induced processes

    NASA Astrophysics Data System (ADS)

    Staneva, Joanna; Ricker, Marcel; Krüger, Oliver; Breivik, Oyvind; Stanev, Emil; Schrum, Corinna

    2017-04-01

    Different effects of wind waves on the hydrodynamics in the North Sea are investigated using a coupled wave (WAM) and circulation (NEMO) model system. The terms accounting for the wave-current interaction are: the Stokes-Coriolis force, the sea-state dependent momentum and energy flux. The role of the different Stokes drift parameterizations is investigated using a particle-drift model. Those particles can be considered as simple representations of either oil fractions, or fish larvae. In the ocean circulation models the momentum flux from the atmosphere, which is related to the wind speed, is passed directly to the ocean and this is controlled by the drag coefficient. However, in the real ocean, the waves play also the role of a reservoir for momentum and energy because different amounts of the momentum flux from the atmosphere is taken up by the waves. In the coupled model system the momentum transferred into the ocean model is estimated as the fraction of the total flux that goes directly to the currents plus the momentum lost from wave dissipation. Additionally, we demonstrate that the wave-induced Stokes-Coriolis force leads to a deflection of the current. During the extreme events the Stokes velocity is comparable in magnitude to the current velocity. The resulting wave-induced drift is crucial for the transport of particles in the upper ocean. The performed sensitivity analyses demonstrate that the model skill depends on the chosen processes. The results are validated using surface drifters, ADCP, HF radar data and other in-situ measurements in different regions of the North Sea with a focus on the coastal areas. The using of a coupled model system reveals that the newly introduced wave effects are important for the drift-model performance, especially during extremes. Those effects cannot be neglected by search and rescue, oil-spill, transport of biological material, or larva drift modelling.

  7. High energy electromagnetic particle transportation on the GPU

    NASA Astrophysics Data System (ADS)

    Canal, P.; Elvira, D.; Jun, S. Y.; Kowalkowski, J.; Paterno, M.; Apostolakis, J.

    2014-06-01

    We present massively parallel high energy electromagnetic particle transportation through a finely segmented detector on a Graphics Processing Unit (GPU). Simulating events of energetic particle decay in a general-purpose high energy physics (HEP) detector requires intensive computing resources, due to the complexity of the geometry as well as physics processes applied to particles copiously produced by primary collisions and secondary interactions. The recent advent of hardware architectures of many-core or accelerated processors provides the variety of concurrent programming models applicable not only for the high performance parallel computing, but also for the conventional computing intensive application such as the HEP detector simulation. The components of our prototype are a transportation process under a non-uniform magnetic field, geometry navigation with a set of solid shapes and materials, electromagnetic physics processes for electrons and photons, and an interface to a framework that dispatches bundles of tracks in a highly vectorized manner optimizing for spatial locality and throughput. Core algorithms and methods are excerpted from the Geant4 toolkit, and are modified and optimized for the GPU application. Program kernels written in C/C++ are designed to be compatible with CUDA and OpenCL and with the aim to be generic enough for easy porting to future programming models and hardware architectures. To improve throughput by overlapping data transfers with kernel execution, multiple CUDA streams are used. Issues with floating point accuracy, random numbers generation, data structure, kernel divergences and register spills are also considered. Performance evaluation for the relative speedup compared to the corresponding sequential execution on CPU is presented as well.

  8. Charged Particle Energization and Transport in Reservoirs throughout the Heliosphere: 1. Solar Energetic Particles

    NASA Astrophysics Data System (ADS)

    Roelof, E. C.

    2015-09-01

    “Reservoirs” of energetic charged particles are regions where the particle population is quasi-trapped in large-scale (relative to the gyroradii) magnetic field structures. Reservoirs are found throughout the heliosphere: the huge heliosheath (90particles within these reservoirs is produced by the interaction when the particle magnetic drifts have a component along the large-scale electric fields produced by plasma convection. The appropriate description of this transport is “weak scattering”, in which the particle's first adiabatic invariant (magnetic moment) is approximately conserved while the particle itself moves rather freely along magnetic field lines. Considerable insight into the observed properties of energization processes can be gained from a remarkably simple equation that describes the particle's fractional time-rate-of-change of momentum (dlnp/dt) which depends only upon its pitch angle, the divergence of the plasma velocity (V⊥) transverse to the magnetic field), and the inner product of (V⊥) with the curvature vector of the field lines. The possibilities encompassed in this simple (but general) equation are quite rich, so we restrict our application of it in this paper to the compressive acceleration of SEPs within CMEs.

  9. Simulating the transport of heavy charged particles through trabecular spongiosa

    NASA Astrophysics Data System (ADS)

    Gersh, Jacob A.

    As planning continues for manned missions far beyond Low Earth Orbit, a paramount concern remains the flight crew's exposure to galactic cosmic radiation. When humans exit the protective magnetic field of Earth, they become subject to bombardment by highly-reactive heavy charged (HZE) particles. A possible consequence of this two- to three-year-long mission is the onset of radiation-induced leukemia, a disorder with a latency period as short as two to three years. Because data on risk to humans from exposure to HZE particles is non-existent, studies of leukemia in animals are now underway to investigate the relative effectiveness of HZE exposures. Leukemogenesis can result from energy depositions occurring within marrow contained in the trabecular spongiosa. Trabecular spongiosa is found in flat bones and within the ends of long bones, and is characterized by an intricate matrix of interconnected bone tissue forming cavities that house marrow. The microscopic internal dimensions of spongiosa vary between species. As radiation traverses this region, interface-induced dose perturbations that occur at the interfaces between bone and marrow affect the patterns of energy deposition within the region. An aim of this project is to determine the extent by which tissue heterogeneity and microscopic dimensions have on patterns of energy deposition within the trabecular spongiosa. This leads to the development of PATHFIT, a computer code capable of generating simple quadric-based geometric models of trabecular spongiosa for both humans and mice based on actual experimentally-determined internal dimensions of trabecular spongiosa. Following the creation of spongiosa models, focus is placed on the development of HITSPAP, a hybrid Monte Carlo (MC) radiation transport code system that combines capabilities of the MC code PENELOPE and MC code PARTRAC. This code is capable of simulating the transport of HZE particles through accurate models of trabecular spongiosa. The final and

  10. Evidence for particle transport between alveolar macrophages in vivo

    SciTech Connect

    Benson, J.M.; Nikula, K.J.; Guilmette, R.A.

    1995-12-01

    Recent studies at this Institute have focused on determining the role of alveolar macrophages (AMs) in the transport of particles within and form the lung. For those studies, AMs previously labeled using the nuclear stain Hoechst 33342 and polychromatic Fluoresbrite microspheres (1 {mu}m diameter, Polysciences, Inc., Warrington, PA) were instilled into lungs of recipient F344 rats. The fate of the donor particles and the doubly labeled AMs within recipient lungs was followed for 32 d. Within 2-4 d after instillation, the polychromatic microspheres were found in both donor and resident AMs, suggesting that particle transfer occurred between the donor and resident AMs. However, this may also have been an artifact resulting from phagocytosis of the microspheres form dead donor cells or from the fading or degradation of Hoechst 33342 within the donor cells leading to their misidentification as resident AMs. The results support the earlier findings that microspheres in donor AMs can be transferred to resident AMs within 2 d after instillation.

  11. Investigations of Particle Transport in the Texas Helimak

    NASA Astrophysics Data System (ADS)

    Taylor, E. I.; Rowan, W. L.; Gentle, K. W.; Huang, H.; Williams, C. B.

    2016-10-01

    The correlation between electrostatic turbulence and particle flux is investigated in a simple magnetic torus, the Helimak. The Helimak is an experimental realization of a sheared cylindrical slab that generates and heats a plasma with microwaves at 2.45 GHz and confines it in a helical magnetic field. Although it is MHD stable, the plasma is always in a nonlinearly saturated state of microturbulence. The causes of this turbulence are diverse and it is thought that it is either due to drift wave instabilities or interchange instabilites. The local particle flux is estimated over most of the plasma cross section by measuring the particle source using filtered cameras. Plasma flow along the field lines is physically similar to SOL flows in tokamaks. It is significant and can be measured directly as well as inferred from asymmetries in the electron density. The cross field transport due to electrostatic turbulence is measured as the cross correlation of radial electric field fluctuations with electron density fluctuations with the data acquired using Langmuir probes. This material is based upon work supported by the U.S. Department of Energy Office of Science, Office of Fusion Energy Sciences under Award Number DE-FG02-04ER54766.

  12. Transport of large particles in flow through porous media

    NASA Astrophysics Data System (ADS)

    Imdakm, A. O.; Sahimi, Muhammad

    1987-12-01

    There is considerable evidence indicating that significant reduction in the efficiency of many processes in porous media, such as enhancing oil recovery, heterogeneous chemical reactions, deep-bed filtration, gel permeation, and liquid chromatography, is due to the reduction in the permeability of the pore space. This reduction is due to the transport of particles, whose sizes are comparable with those of the pores, and the subsequent blocking of the pores by various mechanisms. In this paper we develop a novel Monte Carlo method for theoretical modeling of this phenomenon. Particles of various sizes are injected into the medium, and their migration in the flow field is modeled by a random walk whose transition porbability is proportional to the local pore fluxes. Pores are blocked and their flow capacity is reduced (or vanished) when large particles pass through them (and reduce their flow) or totally block them. The permeability of the medium can ultimately vanish and, therefore, this phenomenon is a percolation process. Various quantities of interest such as the variations of the permeability with process time and the distribution of pore-plugging times are computed. The critical exponent characterizing the vanishing of the permeability near the percolation threshold appears to be different from that of percolation conductivity. The agreement between our results and the available experimental data is excellent.

  13. Particle Swarm Transport through Immiscible Fluid Layers in a Fracture

    NASA Astrophysics Data System (ADS)

    Teasdale, N. D.; Boomsma, E.; Pyrak-Nolte, L. J.

    2011-12-01

    Immiscible fluids occur either naturally (e.g. oil & water) or from anthropogenic processes (e.g. liquid CO2 & water) in the subsurface and complicate the transport of natural or engineered micro- or nano-scale particles. In this study, we examined the effect of immiscible fluids on the formation and evolution of particle swarms in a fracture. A particle swarm is a collection of colloidal-size particles in a dilute suspension that exhibits cohesive behavior. Swarms fall under gravity with a velocity that is greater than the settling velocity of a single particle. Thus a particle swarm of colloidal contaminants can potentially travel farther and faster in a fracture than expected for a dispersion or emulsion of colloidal particles. We investigated the formation, evolution, and break-up of colloidal swarms under gravity in a uniform aperture fracture as hydrophobic/hydrophyllic particle swarms move across an oil-water interface. A uniform aperture fracture was fabricated from two transparent acrylic rectangular prisms (100 mm x 50 mm x 100 mm) that are separated by 1, 2.5, 5, 10 or 50 mm. The fracture was placed, vertically, inside a glass tank containing a layer of pure silicone oil (polydimethylsiloxane) on distilled water. Along the length of the fracture, 30 mm was filled with oil and 70 mm with water. Experiments were conducted using silicone oils with viscosities of 5, 10, 100, or 1000 cSt. Particle swarms (5 μl) were comprised of a 1% concentration (by mass) of 25 micron glass beads (hydrophilic) suspended in a water drop, or a 1% concentration (by mass) of 3 micron polystyrene fluorescent beads (hydrophobic) suspended in a water drop. The swarm behavior was imaged using an optical fluorescent imaging system composed of a CCD camera and by green (525 nm) LED arrays for illumination. Swarms were spherical and remained coherent as they fell through the oil because of the immiscibility of oil and water. However, as a swarm approached the oil-water interface, it

  14. Particle-bound polycyclic aromatic hydrocarbon concentrations in transportation microenvironments

    NASA Astrophysics Data System (ADS)

    Houston, Douglas; Wu, Jun; Yang, Dongwoo; Jaimes, Guillermo

    2013-06-01

    This study is one of the first case studies to characterize the exposure of urban residents to traffic-related air pollution across locations and transportation microenvironments during everyday activities. Twenty-four adult residents of Boyle Heights, a neighborhood near downtown Los Angeles, carried a portable air pollution monitor and a Global Positioning Systems (GPS) tracking device for a total of 96 days. We found significant spatial and temporal variation in the particle-bound polycyclic aromatic hydrocarbon (pPAH) concentrations in transportation microenvironments. Average pPAH concentrations were higher while walking outdoors (190 ng m-3) compared to traveling in private passenger vehicles (138-155 ng m-3) or traveling in public transportation (61-124 ng m-3). Although travel comprised 5% of participant days, it was associated with 27% of overall daily pPAH exposure. Regression models explained 40-55% of the variation in daily average pPAH concentrations, and 40-44% of the variation in 1-min interval concentrations. Important factors included time spent traveling, travel speed, meteorological and nearby land use factors, time of day, and proximity to roadways. Although future research is needed to develop stronger predictive models, our study demonstrates portable tracking devices can provide a more complete, diurnal characterization of air pollution exposures for urban populations.

  15. The importance of gradients in particle activity during sediment transport: Insights from a probabilistic description of particle motions

    NASA Astrophysics Data System (ADS)

    Furbish, D. J.

    2009-04-01

    Sediment particles transported by rainsplash, by bioturbation, and as bedload in turbulent flows, undergo motions that are quasi-random in magnitude and direction. Moreover, these motions characteristically are intermittent, in that particles are mostly at rest most of the time, and heterogeneous, in that the volumetric or areal concentration of particles in motion at any instant is spatially patchy. These particle motions can be formulated as a stochastic processes involving both advective and dispersive parts. By taking into account the intermittent activity of particles, and separating this activity from the physics of motion in the parametric description of transport, the formulation indicates that gradients in particle activity can have a key role in transport. The formulation illustrates, for example, how the growth of soil mounds beneath desert shrubs involves differential rainsplash that initially causes more grains to be splashed inward beneath protective shrub canopies than outward. This ‘harvesting' of nearby soil material, including nutrients, means that shrubs locally participate in regulating the rate sediment transport down a hillslope. With soil bioturbation, spatial variations in the disturbance frequency strongly influence the mixing of soil constituents, including distinct particle fractions (such as specific size or mineral fractions, seeds, or debitage), or elements and compounds adsorbed to particles. The formulation also provides a probabilistic version of the Exner equation. During bedload transport, gradients in particle activity, through both advective and dispersive effects, may contribute importantly to the local divergence of the particle flux, thereby influencing initial bedform growth.

  16. Center for Gyrokinetic Particle Simulations of Turbulent Transport. Final report

    SciTech Connect

    Parker, Scott; Chen, Yang

    2011-05-02

    This is the Final Technical Report for University of Colorado's portion of the SciDAC project 'Center for Gyrokinetic Particle Simulation of Turbulent Transport.' This is funded as a multi-institutional SciDAC Center and W.W. Lee at the Princeton Plasma Physics Laboratory is the lead Principal Investigator. Scott Parker is the local Principal Investigator for University of Colorado and Yang Chen is a Co-Principal Investigator. This is Cooperative Agreement DE-FC02-05ER54816. Research personnel include Yang Chen (Senior Research Associate), Jianying Lang (Graduate Research Associate, Ph.D. Physics Student) and Scott Parker (Associate Professor). Research includes core microturbulence studies of NSTX, simulation of trapped electron modes, development of efficient particle-continuum hybrid methods and particle convergence studies of electron temperature gradient driven turbulence simulations. Recently, the particle-continuum method has been extended to five-dimensions in GEM. We find that actually a simple method works quite well for the Cyclone base case with either fully kinetic or adiabatic electrons. Particles are deposited on a 5D phase-space grid using nearest-grid-point interpolation. Then, the value of delta-f is reset, but not the particle's trajectory. This has the effect of occasionally averaging delta-f of nearby (in the phase space) particles. We are currently trying to estimate the dissipation (or effective collision operator). We have been using GEM to study turbulence and transport in NSTX with realistic equilibrium density and temperature profiles, including impurities, magnetic geometry and ExB shear flow. Greg Rewoldt, PPPL, has developed a TRANSP interface for GEM that specifies the equilibrium profiles and parameters needed to run realistic NSTX cases. Results were reported at the American Physical Society - Division of Plasma Physics, and we are currently running convergence studies to ensure physical results. We are also studying the effect of

  17. Helium, Iron and Electron Particle Transport and Energy Transport Studies on the TFTR Tokamak

    DOE R&D Accomplishments Database

    Synakowski, E. J.; Efthimion, P. C.; Rewoldt, G.; Stratton, B. C.; Tang, W. M.; Grek, B.; Hill, K. W.; Hulse, R. A.; Johnson, D .W.; Mansfield, D. K.; McCune, D.; Mikkelsen, D. R.; Park, H. K.; Ramsey, A. T.; Redi, M. H.; Scott, S. D.; Taylor, G.; Timberlake, J.; Zarnstorff, M. C. (Princeton Univ., NJ (United States). Plasma Physics Lab.); Kissick, M. W. (Wisconsin Univ., Madison, WI (United States))

    1993-03-01

    Results from helium, iron, and electron transport on TFTR in L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power are presented. They are compared to results from thermal transport analysis based on power balance. Particle diffusivities and thermal conductivities are radially hollow and larger than neoclassical values, except possibly near the magnetic axis. The ion channel dominates over the electron channel in both particle and thermal diffusion. A peaked helium profile, supported by inward convection that is stronger than predicted by neoclassical theory, is measured in the Supershot The helium profile shape is consistent with predictions from quasilinear electrostatic drift-wave theory. While the perturbative particle diffusion coefficients of all three species are similar in the Supershot, differences are found in the L-Mode. Quasilinear theory calculations of the ratios of impurity diffusivities are in good accord with measurements. Theory estimates indicate that the ion heat flux should be larger than the electron heat flux, consistent with power balance analysis. However, theoretical values of the ratio of the ion to electron heat flux can be more than a factor of three larger than experimental values. A correlation between helium diffusion and ion thermal transport is observed and has favorable implications for sustained ignition of a tokamak fusion reactor.

  18. Effects of hydrodynamic interactions on rectified transport of self-propelled particles

    NASA Astrophysics Data System (ADS)

    Ai, Bao-quan; He, Ya-feng; Zhong, Wei-rong

    2017-01-01

    Directed transport of self-propelled particles is numerically investigated in a three-dimensional asymmetric potential. Beside the steric repulsive forces, hydrodynamic interactions between particles have been taken into account in an approximate way. From numerical simulations, we find that hydrodynamic interactions can strongly affect the rectified transport of self-propelled particles. Hydrodynamic interactions enhance the performance of the rectified transport when particles can easily pass across the barrier of the potential, and reduce the rectified transport when particles are mainly trapped in the potential well.

  19. Cosmic-Ray Transport in Heliospheric Magnetic Structures. II. Modeling Particle Transport through Corotating Interaction Regions

    NASA Astrophysics Data System (ADS)

    Kopp, Andreas; Wiengarten, Tobias; Fichtner, Horst; Effenberger, Frederic; Kühl, Patrick; Heber, Bernd; Raath, Jan-Louis; Potgieter, Marius S.

    2017-03-01

    The transport of cosmic rays (CRs) in the heliosphere is determined by the properties of the solar wind plasma. The heliospheric plasma environment has been probed by spacecraft for decades and provides a unique opportunity for testing transport theories. Of particular interest for the three-dimensional (3D) heliospheric CR transport are structures such as corotating interaction regions (CIRs), which, due to the enhancement of the magnetic field strength and magnetic fluctuations within and due to the associated shocks as well as stream interfaces, do influence the CR diffusion and drift. In a three-fold series of papers, we investigate these effects by modeling inner-heliospheric solar wind conditions with the numerical magnetohydrodynamic (MHD) framework Cronos (Wiengarten et al., referred as Paper I), and the results serve as input to a transport code employing a stochastic differential equation approach (this paper). While, in Paper I, we presented results from 3D simulations with Cronos, the MHD output is now taken as an input to the CR transport modeling. We discuss the diffusion and drift behavior of Galactic cosmic rays using the example of different theories, and study the effects of CIRs on these transport processes. In particular, we point out the wide range of possible particle fluxes at a given point in space resulting from these different theories. The restriction of this variety by fitting the numerical results to spacecraft data will be the subject of the third paper of this series.

  20. Directed transport of active particles over asymmetric energy barriers.

    PubMed

    Koumakis, N; Maggi, C; Di Leonardo, R

    2014-08-21

    We theoretically and numerically investigate the transport of active colloids to target regions, delimited by asymmetric energy barriers. We show that it is possible to introduce a generalized effective temperature that is related to the local variance of particle velocities. The stationary probability distributions can be derived from a simple diffusion equation in the presence of an inhomogeneous effective temperature resulting from the action of external force fields. In particular, transition rates over asymmetric energy barriers can be unbalanced by having different effective temperatures over the two slopes of the barrier. By varying the type of active noise, we find that equal values of diffusivity and persistence time may produce strongly varied effective temperatures and thus stationary distributions.

  1. Particle model for nonlocal heat transport in fusion plasmas.

    PubMed

    Bufferand, H; Ciraolo, G; Ghendrih, Ph; Lepri, S; Livi, R

    2013-02-01

    We present a simple stochastic, one-dimensional model for heat transfer in weakly collisional media as fusion plasmas. Energies of plasma particles are treated as lattice random variables interacting with a rate inversely proportional to their energy schematizing a screened Coulomb interaction. We consider both the equilibrium (microcanonical) and nonequilibrium case in which the system is in contact with heat baths at different temperatures. The model exhibits a characteristic length of thermalization that can be associated with an interaction mean free path and one observes a transition from ballistic to diffusive regime depending on the average energy of the system. A mean-field expression for heat flux is deduced from system heat transport properties. Finally, it is shown that the nonequilibrium steady state is characterized by long-range correlations.

  2. Anisometric transport of ions and particles in anisotropic tissue spaces.

    PubMed

    Grover, N B

    1966-01-01

    The results of time-lapse measurements and electron microscopic observations on the diffusion of histological dyes, colloidal particles, and heavy metal salts in excised chicken breast tendon are reported. In all cases, the transport was found to be anisometric, the extent of the spreading being much greater parallel than perpendicular to the collagen fibers. The diffusion of colloidal gold was shown to be governed by a random diffusion process, with coefficients of 3 to 5 x 10(-7) and 1 to 2 x 10(-7) cm(2)/sec for the parallel and perpendicular directions, respectively; the anisotropy was attributed to steric hindrance. In the diffusion of uranyl nitrate, a sharp boundary appeared at the leading edge of the diffusate and advanced at a rate proportional to the square root of time. Electron micrographs showed uranyl nitrate clusters localized in space on the surface of the collagen fibrils and tightly bound to the polar amino acid regions of the macromolecule. A model was proposed involving diffusion with attrition, and predicted a sharp boundary advancing proportionally to the square root of time and to the 0.65 power of the initial diffusate concentration. Application of the model to the experimental results for uranyl nitrate gave a diffusion coefficient of 10 x 10(-7) and 4 x 10(-7) cm(2)/sec for the parallel and perpendicular directions, respectively, and a possible explanation of this large difference was advanced. The importance of anisometric transport in anisotropic tissues was indicated.

  3. Gyrokinetic simulations of particle transport in pellet fuelled JET discharges

    NASA Astrophysics Data System (ADS)

    Tegnered, D.; Oberparleiter, M.; Nordman, H.; Strand, P.; Garzotti, L.; Lupelli, I.; Roach, C. M.; Romanelli, M.; Valovič, M.; Contributors, JET

    2017-10-01

    Pellet injection is a likely fuelling method of reactor grade plasmas. When the pellet ablates, it will transiently perturb the density and temperature profiles of the plasma. This will in turn change dimensionless parameters such as a/{L}n,a/{L}T and plasma β. The microstability properties of the plasma then changes which influences the transport of heat and particles. In this paper, gyrokinetic simulations of a JET L-mode pellet fuelled discharge are performed. The ion temperature gradient/trapped electron mode turbulence is compared at the time point when the effect from the pellet is the most pronounced with a hollow density profile and when the profiles have relaxed again. Linear and nonlinear simulations are performed using the gyrokinetic code GENE including electromagnetic effects and collisions in a realistic geometry in local mode. Furthermore, global nonlinear simulations are performed in order to assess any nonlocal effects. It is found that the positive density gradient has a stabilizing effect that is partly counteracted by the increased temperature gradient in the this region. The effective diffusion coefficients are reduced in the positive density region region compared to the intra pellet time point. No major effect on the turbulent transport due to nonlocal effects are observed.

  4. A moment-preserving nonanalog method for charged particle transport.

    SciTech Connect

    Prinja, Anil K.; Franke, Brian Claude; Fichtl, Erin; Harding, Lee T.

    2004-09-01

    Extremely short collision mean free paths and near-singular elastic and inelastic differential cross sections (DCS) make analog Monte Carlo simulation an impractical tool for charged particle transport. The widely used alternative, the condensed history method, while efficient, also suffers from several limitations arising from the use of precomputed smooth distributions for sampling. There is much interest in developing computationally efficient algorithms that implement the correct transport mechanics. Here we present a nonanalog transport-based method that incorporates the correct transport mechanics and is computationally efficient for implementation in single event Monte Carlo codes. Our method systematically preserves important physics and is mathematically rigorous. It builds on higher order Fokker-Planck and Boltzmann Fokker-Planck representations of the scattering and energy-loss process, and we accordingly refer to it as a Generalized Boltzmann Fokker-Planck (GBFP) approach. We postulate the existence of nonanalog single collision scattering and energy-loss distributions (differential cross sections) and impose the constraint that the first few momentum transfer and energy loss moments be identical to corresponding analog values. This is effected through a decomposition or hybridizing scheme wherein the singular forward peaked, small energy-transfer collisions are isolated and de-singularized using different moment-preserving strategies, while the large angle, large energy-transfer collisions are described by the exact (analog) DCS or approximated to a high degree of accuracy. The inclusion of the latter component allows the higher angle and energy-loss moments to be accurately captured. This procedure yields a regularized transport model characterized by longer mean free paths and smoother scattering and energy transfer kernels than analog. In practice, acceptable accuracy is achieved with two rigorously preserved moments, but accuracy can be

  5. Particle Transport and Accumulation in Norfolk and Baltimore Canyons

    NASA Astrophysics Data System (ADS)

    Robertson, C.; Mienis, F.; Duineveld, G.; Prouty, N.; Davies, A. J.; Ross, S. W.; Demopoulos, A. W.

    2016-02-01

    The Mid-Atlantic Bight is incised by several large canyons two of which were studied as part of a multi-disciplinary project initiated by the Bureau of Ocean Energy Management (BOEM, USA) and jointly funded by BOEM, NOAA and USGS. The heads of the canyons, which are situated 140 km apart, both lie at a distance of 90 km off shore on the same shelf margin and lack direct input from rivers. Two hypotheses were formulated at the start of the study: i) canyons incising the MAB shelf, including Norfolk and Baltimore, capture sediment and organic carbon. This transport ultimately enriches the canyon floor sediment, resulting in higher concentration and quality of carbon than the adjacent slope, and ii) given Baltimore and Norfolk canyons have a very different morphology and orientation from each other, and previous reports indicated differences in sediment grain size and transport properties, the canyons have different sedimentation patterns and accumulation rates, which explains the differing faunal communities between the two canyons. Core samples collected along the canyon axis and for comparison on the adjacent open slope were analyzed for their sediment composition, organic matter content and accumulation rates. Additionally water column properties, including turbidity were measured with CTD. In contrast to our expectations, sediment distribution, sedimentation rates and organic matter content differed strongly between both canyons. Although accumulation rates in both canyons were higher than accumulation rates on the open slope, Norfolk canyon showed an even distribution of sediment and organic matter along the canyon axis. While two distinct zones were observed in Baltimore Canyon; coarse grained sediments with low organic matter in the upper canyon and finer grained sediments with high organic matter content in the lower canyon. Differences are attributed to canyon morphology, physical processes and active particle transport.

  6. Discrete particle model for sheet flow sediment transport in the nearshore

    NASA Astrophysics Data System (ADS)

    Drake, Thomas G.; Calantoni, Joseph

    2001-09-01

    Fully three-dimensional discrete particle computer simulations of high-concentration sheet flow transport in oscillatory flows quantify the effect of fluid acceleration on bed load transport in highly unsteady flows typical of nearshore marine environments. A simple impulse-momentum approach explains simulation results and forms the basis for adding an acceleration-related term to widely used energetics sediment transport formulae. Transport predicted by the acceleration term becomes increasingly significant as wave shape approaches the sawtooth profile characteristic of surf zone bores. Simulations integrate F = ma and a corresponding set of equations for the torques for each sphere. Normal and tangential forces between contacting particles are linear functions of the distance between sphere centers and the relative tangential displacement at the contact point, respectively; particle interactions are both inelastic and frictional. Pressure gradient forces generated by the passage of surface gravity waves drive fluid and particle motion in a stack of thin horizontal fluid layers that exchange momentum and exert fluid drag, added mass, and buoyancy forces on particles. Transport properties of the simulated granular-fluid assemblage are robust to large variations in material properties of the particles. Simulated transport rates agree with available experimental data for unsteady transport of coarse sands; the mode of bed load motion, dispersion of bed load particles, and particle segregation by size and density are qualitatively consistent with available particle-scale observations of bed load transport of natural particles.

  7. Altered transport of lindane caused by the retention of natural particles in saturated porous media

    NASA Astrophysics Data System (ADS)

    Ngueleu, Stéphane K.; Grathwohl, Peter; Cirpka, Olaf A.

    2014-07-01

    Attachment and straining of colloidal particles in porous media result in their reversible and irreversible retention. The retained particles may either increase the retention of hydrophobic pollutants by sorption onto the particles, or enhance pollutant transport when particles, loaded with the pollutants, are remobilized. The present study examines the effects of retained particles on the transport of the hydrophobic pesticide lindane (gamma-hexachlorocyclohexane) in saturated porous media. The lignite particles used have median diameters of about 3 μm, 1 μm, 0.8 μm, and 0.2 μm, respectively. Laboratory column experiments were analyzed by numerical modeling in order to identify and understand the processes involved in the transport of the particles and of lindane. Four scenarios were considered in which the solution containing lindane is injected either during or after the elution of the particles. The results show that lignite particles retained in a sandy porous medium alter the transport of the invading lindane. Particle retention was high in all scenarios and increased with increasing particle size. Remobilization of particles occurred due to a change in solution chemistry, and continuous particle detachment was observed over time. Numerical modeling of particle transport suggests that both reversible attachment and irreversible straining affected the transport of the particles. Lindane was retarded in all scenarios due to the strong particle retention in conjunction with the sorption of lindane onto the sand and onto retained particles, and the limited number of mobile particles carrying lindane. Moreover, it was found that intra-particle diffusion limited adsorption/desorption of lindane onto/from both limestone fragments of the sand and lignite particles. We assume that retention of lindane is reversible even though lindane recovery was incomplete over the duration of the experiments. The analysis of the effluent concentration suggests that retained

  8. An approach to improving transporting velocity in the long-range ultrasonic transportation of micro-particles

    SciTech Connect

    Meng, Jianxin; Mei, Deqing Yang, Keji; Fan, Zongwei

    2014-08-14

    In existing ultrasonic transportation methods, the long-range transportation of micro-particles is always realized in step-by-step way. Due to the substantial decrease of the driving force in each step, the transportation is lower-speed and stair-stepping. To improve the transporting velocity, a non-stepping ultrasonic transportation approach is proposed. By quantitatively analyzing the acoustic potential well, an optimal region is defined as the position, where the largest driving force is provided under the condition that the driving force is simultaneously the major component of an acoustic radiation force. To keep the micro-particle trapped in the optimal region during the whole transportation process, an approach of optimizing the phase-shifting velocity and phase-shifting step is adopted. Due to the stable and large driving force, the displacement of the micro-particle is an approximately linear function of time, instead of a stair-stepping function of time as in the existing step-by-step methods. An experimental setup is also developed to validate this approach. Long-range ultrasonic transportations of zirconium beads with high transporting velocity were realized. The experimental results demonstrated that this approach is an effective way to improve transporting velocity in the long-range ultrasonic transportation of micro-particles.

  9. M3D-K simulations of sawteeth and energetic particle transport in tokamak plasmas

    SciTech Connect

    Shen, Wei; Sheng, Zheng-Mao; Fu, G. Y.; Breslau, J. A.; Wang, Feng

    2014-09-15

    Nonlinear simulations of sawteeth and related energetic particle transport are carried out using the kinetic/magnetohydrodynamic (MHD) hybrid code M3D-K. MHD simulations show repeated sawtooth cycles for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in the plasma core, depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with existing theories. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases with increasing particle energy.

  10. Electron tomography of IFT particles.

    PubMed

    Pigino, Gaia; Cantele, Francesca; Vannuccini, Elisa; Lanzavecchia, Salvatore; Paccagnini, Eugenio; Lupetti, Pietro

    2013-01-01

    Cilia and flagella play very important roles in eukaryotic cells, ranging from cell motility to chemo- and mechanosensation with active involvement in embryonic development and control of cell division. Cilia and flagella are highly dynamic organelles undergoing constant turnover at their tip, where multiprotein precursors synthesized in the cell cytoplasm are assembled, turnover products are released and carried back for recycling. Such bidirectional trafficking is maintained by an ATP-dependent active transport that is carried out by intraflagellar transport (IFT) particles. Despite our knowledge of the cell biology, the genomic, and the biochemistry of IFT, high-resolution 3D models for IFT are still missing. To date, the only information on the 3D structure of IFT come from our analysis of full-length flagella from the biflagellate green alga Chlamydomonas reinhardtii: the model organism where IFT was discovered and first characterized. In this chapter, we describe and discuss the strategy we implemented to produce the first 3D models of in situ IFT trains in flat-embedded flagella. We provide detailed information about the acquisition of tomographic images, the simultaneous alignment of the double-tilt tomographic series, and the analysis of the tomograms by subtomogram averaging for the generation of detailed 3D models of IFT particles.

  11. Coherent pulses in the diffusive transport of charged particles`

    NASA Technical Reports Server (NTRS)

    Kota, J.

    1994-01-01

    We present exact solutions to the diffusive transport of charged particles following impulsive injection for a simple model of scattering. A modified, two-parameter relaxation-time model is considered that simulates the low rate of scattering through perpendicular pitch-angle. Scattering is taken to be isotropic within each of the foward- and backward-pointing hemispheres, respectively, but, at the same time, a reduced rate of sccattering is assumed from one hemisphere to the other one. By applying a technique of Fourier- and Laplace-transform, the inverse transformation can be performed and exact solutions can be reached. By contrast with the first, and so far only exact solutions of Federov and Shakov, this wider class of solutions gives rise to coherent pulses to appear. The present work addresses omnidirectional densities for isotropic injection from an instantaneous and localized source. The dispersion relations are briefly discussed. We find, for this particular model, two diffusive models to exist up to a certain limiting wavenumber. The corresponding eigenvalues are real at the lowest wavenumbers. Complex eigenvalues, which are responsible for coherent pulses, appear at higher wavenumbers.

  12. Kinetic simulation of neutral particle transport in sputtering processes

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan; Gallian, Sara; Brinkmann, Ralf Peter; Mussenbrock, Thomas; Ries, Stefan; Bibinov, Nikita; Awakowicz, Peter

    2013-09-01

    For many physical vapor deposition applications using sputtering processes, knowledge about the detailed spatial and temporal evolution of the involved gas species is of great importance. Modeling of the involved gas dynamic and plasma processes is however challenging, because the operating pressure is typically below 1 Pa. In consequence, only kinetic descriptions are appropriate. In order to approach this problem, the dynamics of sputtered particle transport through a neutral gas background is simulated. For this study, a modified version of the three-dimensional Direct Simulation Monte Carlo (DSMC) code dsmcFoam is utilized. The impact of a transient sputtering wind is investigated in a generic reactor geometry, which may be used for dc Magnetron Sputtering (dcMS), High Power Impulse Magnetron Sputtering (HiPIMS), as well as sputtering in capacitively coupled discharges. In the present work a rarefaction of the background gas is observed. Moreover in pulsed mode the temporal dynamics of the rarefaction and subsequent recovery of the background gas is investigated. This work is supported by the German Research Foundation in the frame of TRR 87.

  13. An SN Application of Homotopy Continuation in Neutral Particle Transport

    NASA Astrophysics Data System (ADS)

    Myers, Nicholas T.

    The objective of this dissertation is to investigate the usefulness of homotopy continuation applied in the context of neutral particle transport where traditional methods of acceleration degrade. This occurs in higher dimensional heterogeneous problems. We focus on utilizing homotopy continuation as a means of providing a better initial guess for difficult problems. We investigate various homotopy formulations for two primary difficult problems: a thick-diffusive fixed internal source, and a k-eigenvalue problem with high dominance ratio. We also investigate the usefulness of homotopy continuation for computationally intensive problems with 30-energy groups. We find that homotopy continuation exhibits usefulness in specific problem formulations. In the thick-diffusive problem it shows benefit when there is a strong internal source in thin materials. In the k-eigenvalue problem, homotopy continuation provides an improvement in convergence speed for fixed point iteration methods in high dominance ratio problems. We also show that one of our imbeddings successfully stabilizes the nonlinear formulation of the k-eigenvalue problem with a high dominance ratio.

  14. Chlamydomonas shortens its flagella by activating axonemal disassembly, stimulating IFT particle trafficking, and blocking anterograde cargo loading.

    PubMed

    Pan, Junmin; Snell, William J

    2005-09-01

    Almost all eukaryotic cells form cilia/flagella, maintain them at their genetically specified lengths, and shorten them. Here, we define the cellular mechanisms that bring about shortening of flagella prior to meiotic cell division and in response to environmental cues in the biflagellated green alga Chlamydomonas. We show that the flagellar shortening pathway is distinct from the one that enforces transient shortening essential for length control. During flagellar shortening, disassembly of the axoneme is stimulated over the basal rate, and the rate of entry into flagella of intraflagellar transport (IFT) particles is increased. Moreover, the particles entering the disassembling flagella lack cargo. Thus, flagellar shortening depends on the interplay between dynamic properties of the axoneme and the IFT machinery; a cell triggered to shorten its flagellum activates disassembly of the axoneme and stimulates entry into the flagellum of IFT particles possessing empty cargo binding sites available to retrieve the disassembled components.

  15. Flow and particle dispersion in a pulmonary alveolus--part II: effect of gravity on particle transport.

    PubMed

    Chhabra, Sudhaker; Prasad, Ajay K

    2010-05-01

    The acinar region of the human lung comprises about 300x10(6) alveoli, which are responsible for gas exchange between the lung and the blood. As discussed in Part I (Chhabra and Prasad, "Flow and Particle Dispersion in a Pulmonary Alveolus-Part I: Velocity Measurements and Convective Particle Transport," ASME J. Biomech. Eng., 132, p. 051009), the deposition of aerosols in the acinar region can either be detrimental to gas exchange (as in the case of harmful particulate matter) or beneficial (as in the case of inhalable pharmaceuticals). We measured the flow field inside an in-vitro model of a single alveolus mounted on a bronchiole and calculated the transport and deposition of massless particles in Part I. This paper focuses on the transport and deposition of finite-sized particles ranging from 0.25 microm to 4 microm under the combined influence of flow-induced advection (computed from velocity maps obtained by particle image velocimetry) and gravitational settling. Particles were introduced during the first inhalation cycle and their trajectories and deposition statistics were calculated for subsequent cycles for three different particle sizes (0.25 microm, 1 microm, and 4 microm) and three alveolar orientations. The key outcome of the study is that particles particles (d(p)=1 microm) deviate to some extent from streamlines and exhibit complex trajectories. The motion of large particles >or=4 microm is dominated by gravitational settling and shows little effect of fluid advection. Additionally, small and midsize particles deposit at about two-thirds height in the alveolus irrespective of the gravitational orientation whereas the deposition of large particles is governed primarily by the orientation of the gravity vector.

  16. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1992-12-31

    Particle and energy transport in tokamak plasmas have long been subjects of vigorous investigation. Present-day measurement techniques permit radially resolved studies of the transport of electron perturbations, low- and high-Z impurities, and energy. In addition, developments in transport theory provide tools that can be brought to bear on transport issues. Here, we examine local particle transport measurements of electrons, fully-stripped thermal helium, and helium-like iron in balanced-injection L-mode and enhanced confinement deuterium plasmas on TFTR of the same plasma current, toroidal field, and auxiliary heating power. He{sup 2{plus}} and Fe{sup 24{plus}} transport has been studied with charge exchange recombination spectroscopy, while electron transport has been studied by analyzing the perturbed electron flux following the same helium puff used for the He{sup 2{plus}} studies. By examining the electron and He{sup 2{plus}} responses following the same gas puff in the same plasmas, an unambiguous comparison of the transport of the two species has been made. The local energy transport has been examined with power balance analysis, allowing for comparisons to the local thermal fluxes. Some particle and energy transport results from the Supershot have been compared to a transport model based on a quasilinear picture of electrostatic toroidal drift-type microinstabilities. Finally, implications for future fusion reactors of the observed correlation between thermal transport and helium particle transport is discussed.

  17. The persistence, transport and health effects of regional ultrafine particles

    NASA Astrophysics Data System (ADS)

    Spada, Nicholas James

    Due to the multitude of health studies that have shown the ability of ultrafine particles (UFPs, DP < 100 nm) to penetrate deep into lung tissue, diffuse into the bloodstream, and eventually cause heart and lung disease, my thesis will focus on these effectively unmonitored airborne pollutants. UFPs are commonly detected near busy roadways and other high-temperature combustion sources in the form of heavy metals (copper, lead, zinc, iron) and toxic organics (benzo{a}pyrene, coronene). Studies of UFPs during the 1970s expressed a nucleic propensity for coagulation and growth. Because many of the UFPs studied were generated from heavy-duty diesel engines operating with ≥0.3 wt % sulfur, the resulting sulfur-containing UFPs were hydrophilic and water vapor readily condensed on the generated nuclei. Due to their increased size, UFPs tend to settle out of air streams quickly; thus, limiting their impact regime to near-roadway influence and labeling them as local pollutants. By using highly size- and time-resolved impactors with TeflonRTM ultrafine after-filters (targeting DP < 90 nm), new evidence suggests the persistence of UFPs for greater periods of time and transport than previously predicted. Techniques developed during the Roseville rail yard study, refined during the Watt Ave/Arden Way study and applied across California's central valley have shown low levels of UFPs in a regional background. For cities in constrictive topography and meteorology (such as Bakersfield, Fresno and Los Angeles), winter inversions and stagnant weather can saturate the region with ultrafine heavy metals and carcinogenic organics, similar to the disasters during the middle of the last century.

  18. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1992-01-01

    Particle and energy transport in tokamak plasmas have long been subjects of vigorous investigation. Present-day measurement techniques permit radially resolved studies of the transport of electron perturbations, low- and high-Z impurities, and energy. In addition, developments in transport theory provide tools that can be brought to bear on transport issues. Here, we examine local particle transport measurements of electrons, fully-stripped thermal helium, and helium-like iron in balanced-injection L-mode and enhanced confinement deuterium plasmas on TFTR of the same plasma current, toroidal field, and auxiliary heating power. He[sup 2[plus

  19. Continuous Nano-Particle Transport in a Standing Wave Optical Line Trap

    NASA Astrophysics Data System (ADS)

    Demergis, Vassili; Florin, Ernst-Ludwig

    2011-03-01

    Since the introduction of the single beam optical trap (SBT) by Ashkin et. al. in 1986, trapping and manipulation of micron-sized particles by optical forces has become instrumental in many areas of research. However, controlled transport of large numbers of particles is difficult using a SBT. Here we introduce a technique for controlled transport that we call an Optical Capillary (OC), named for its ability to strongly confine and continuously transport nanometer-sized particles. The OC, generated by an optical standing wave pattern, is especially strong along the optical axis due to the compensation of the axial scattering force. We utilize the lateral scattering forces to control the transport of particles along a line perpendicular to the optical axis. The measured velocity profiles of single particles in the OC agree with our model predictions.

  20. Turbulent transport of alpha particles in reactor plasmas

    SciTech Connect

    Estrada-Mila, C.; Candy, J.; Waltz, R. E.

    2006-11-15

    A systematic study of the behavior of energetic ions in reactor plasmas is presented. Using self-consistent gyrokinetic simulations, in concert with an analytic asymptotic theory, it is found that alpha particles can interact significantly with core ion-temperature-gradient turbulence. Specifically, the per-particle flux of energetic alphas is comparable to the per-particle flux of thermal species (deuterium or helium ash). This finding opposes the conventional wisdom that energetic ions, because of their large gyroradii, do not interact with the turbulence. For the parameters studied, a turbulent modification of the alpha-particle density profile appears to be stronger than turbulent modification of the alpha-particle pressure profile. Crude estimates indicate that the alpha density modification, which is directly proportional to the core turbulence intensity, could be in the range of 15% at midradius in a reactor. The corresponding modification of the alpha-particle pressure profile is predicted to be smaller (in the 1% range)

  1. Entrainment, motion, and deposition of coarse particles transported by water over a sloping mobile bed

    NASA Astrophysics Data System (ADS)

    Heyman, J.; Bohorquez, P.; Ancey, C.

    2016-10-01

    In gravel bed rivers, bed load transport exhibits considerable variability in time and space. Recently, stochastic bed load transport theories have been developed to address the mechanisms and effects of bed load transport fluctuations. Stochastic models involve parameters such as particle diffusivity, entrainment, and deposition rates. The lack of hard information on how these parameters vary with flow conditions is a clear impediment to their application to real-world scenarios. In this paper, we determined the closure equations for the above parameters from laboratory experiments. We focused on shallow supercritical flow on a sloping mobile bed in straight channels, a setting that was representative of flow conditions in mountain rivers. Experiments were run at low sediment transport rates under steady nonuniform flow conditions (i.e., the water discharge was kept constant, but bed forms developed and migrated upstream, making flow nonuniform). Using image processing, we reconstructed particle paths to deduce the particle velocity and its probability distribution, particle diffusivity, and rates of deposition and entrainment. We found that on average, particle acceleration, velocity, and deposition rate were responsive to local flow conditions, whereas entrainment rate depended strongly on local bed activity. Particle diffusivity varied linearly with the depth-averaged flow velocity. The empirical probability distribution of particle velocity was well approximated by a Gaussian distribution when all particle positions were considered together. In contrast, the particles located in close vicinity to the bed had exponentially distributed velocities. Our experimental results provide closure equations for stochastic or deterministic bed load transport models.

  2. Microbial and Organic Fine Particle Transport Dynamics in Streams - a Combined Experimental and Stochastic Modeling Approach

    NASA Astrophysics Data System (ADS)

    Drummond, Jen; Davies-Colley, Rob; Stott, Rebecca; Sukias, James; Nagels, John; Sharp, Alice; Packman, Aaron

    2014-05-01

    Transport dynamics of microbial cells and organic fine particles are important to stream ecology and biogeochemistry. Cells and particles continuously deposit and resuspend during downstream transport owing to a variety of processes including gravitational settling, interactions with in-stream structures or biofilms at the sediment-water interface, and hyporheic exchange and filtration within underlying sediments. Deposited cells and particles are also resuspended following increases in streamflow. Fine particle retention influences biogeochemical processing of substrates and nutrients (C, N, P), while remobilization of pathogenic microbes during flood events presents a hazard to downstream uses such as water supplies and recreation. We are conducting studies to gain insights into the dynamics of fine particles and microbes in streams, with a campaign of experiments and modeling. The results improve understanding of fine sediment transport, carbon cycling, nutrient spiraling, and microbial hazards in streams. We developed a stochastic model to describe the transport and retention of fine particles and microbes in rivers that accounts for hyporheic exchange and transport through porewaters, reversible filtration within the streambed, and microbial inactivation in the water column and subsurface. This model framework is an advance over previous work in that it incorporates detailed transport and retention processes that are amenable to measurement. Solute, particle, and microbial transport were observed both locally within sediment and at the whole-stream scale. A multi-tracer whole-stream injection experiment compared the transport and retention of a conservative solute, fluorescent fine particles, and the fecal indicator bacterium Escherichia coli. Retention occurred within both the underlying sediment bed and stands of submerged macrophytes. The results demonstrate that the combination of local measurements, whole-stream tracer experiments, and advanced modeling

  3. Particle Transport and Energization Associated with Disturbed Magnetospheric Events

    SciTech Connect

    C.Z. Cheng; J.R. Johnson; S. Zaharia

    1999-11-01

    Energetic particle flux enhancement events observed by satellites during strongly disturbed events in the magnetosphere (e.g., substorms, storm sudden commencements, etc.) are studied by considering interaction of particles with Earthward propagating electromagnetic pulses of westward electric field and consistent magnetic field of localized radial and azimuthal extent in a background magnetic field. The energetic particle flux enhancement is mainly due to the betatron acceleration process: particles are swept by the Earthward propagating electric field pulses via the EXB drift toward the Earth to higher magnetic field locations and are energized because of magnetic moment conservation. The most energized particles are those which stay in the pulse for the longest time and are swept the longest radial distance toward the Earth. Assuming a constant propagating velocity of the pulse we obtain analytical solutions of particle orbits. We examine substorm energetic particle injection by computing the particle flux and comparing with geosynchronous satellite observations. Our results show that for pulse parameters leading to consistency with observed flux values, the bulk of the injected particles arrive from distances less than 9 R(subscript E), which is closer to the Earth than the values obtained by the previous model and is also closer to the distances obtained by the injection boundary model.

  4. Flow and particle dispersion in a pulmonary alveolus--part I: velocity measurements and convective particle transport.

    PubMed

    Chhabra, Sudhaker; Prasad, Ajay K

    2010-05-01

    The alveoli are the smallest units of the lung that participate in gas exchange. Although gas transport is governed primarily by diffusion due to the small length scales associated with the acinar region (approximately 500 microm), the transport and deposition of inhaled aerosol particles are influenced by convective airflow patterns. Therefore, understanding alveolar fluid flow and mixing is a necessary first step toward predicting aerosol transport and deposition in the human acinar region. In this study, flow patterns and particle transport have been measured using a simplified in-vitro alveolar model consisting of a single alveolus located on a bronchiole. The model comprises a transparent elastic 5/6 spherical cap (representing the alveolus) mounted over a circular hole on the side of a rigid circular tube (representing the bronchiole). The alveolus is capable of expanding and contracting in phase with the oscillatory flow through the tube. Realistic breathing conditions were achieved by exercising the model at physiologically relevant Reynolds and Womersley numbers. Particle image velocimetry was used to measure the resulting flow patterns in the alveolus. Data were acquired for five cases obtained as combinations of the alveolar-wall motion (nondeforming/oscillating) and the bronchiole flow (none/steady/oscillating). Detailed vector maps at discrete points within a given cycle revealed flow patterns, and transport and mixing of bronchiole fluid into the alveolar cavity. The time-dependent velocity vector fields were integrated over multiple cycles to estimate particle transport into the alveolar cavity and deposition on the alveolar wall. The key outcome of the study is that alveolar-wall motion enhances mixing between the bronchiole and the alveolar fluid. Particle transport and deposition into the alveolar cavity are maximized when the alveolar wall oscillates in tandem with the bronchiole fluid, which is the operating case in the human lung.

  5. Aspect ratio effect on particle transport in turbulent duct flows

    NASA Astrophysics Data System (ADS)

    Noorani, A.; Vinuesa, R.; Brandt, L.; Schlatter, P.

    2016-11-01

    The dynamics of dilute micron-sized spherical inertial particles in turbulent duct flows is studied by means of direct numerical simulations of the carrier phase turbulence with one-way coupled Lagrangian particles. The geometries are a square and a rectangular duct with width-to-height aspect ratio AR of 3 operating at Reτ,c = 360 (based on the centerplane friction velocity and duct half-height). The present study is designed to determine the effect of turbulence-driven secondary motion on the particle dynamics. Our results show that a weak cross-flow secondary motion significantly changes the cross-sectional map of the particle concentration, mean velocity, and fluctuations. As the geometry of the duct is widened from AR = 1 to 3, the secondary vortex on the horizontal wall significantly expands in the spanwise direction, and although the kinetic energy of the secondary flow increases close to the corner, it decays towards the duct centreplane in the AR = 3 case so as the turbulent carrier phase approaches the behavior in spanwise-periodic channel flows, a fact that significantly affects the particle statistics. In the square duct the particle concentration in the viscous sublayer is maximum at the duct centreplane, whereas the maximum is found closer to the corner, at a distance of |z/h| ≈ 1.25 from the centreplane, in the AR = 3 case. Interestingly the centreplane concentration in the rectangular duct is around 3 times lower than that in the square duct. Moreover, a second peak in the accumulation distribution is found right at the corners for both ducts. At this location the concentration increases with particle inertia. The secondary motion changes also the cross-stream map of the particle velocities significantly in comparison to the fluid flow statistics. These directly affect the particle velocity fluctuations such that multiple peaks appear near the duct walls for the particle streamwise and wall-normal velocity fluctuations.

  6. The effect of inelastic collisions on the transport of alpha particles in ITER-like plasmas

    NASA Astrophysics Data System (ADS)

    Clauser, C. F.; Farengo, R.

    2017-04-01

    The effect of charge changes on the transport of alpha particles in ITER-like plasmas is studied with a numerical code that follows the exact particle trajectories and includes the effect of elastic and inelastic collisions. It is shown that charge changing processes can produce significant changes in the transport of alpha particles in the edge-SOL region. The addition of inelastic collisions actually reduces the alpha particle loss rate below the level obtained when only elastic (Coulomb) collisions are included. This is due to the inward flux produced by the neutral density gradient. Power losses, on the other hand, remain at approximately the same level because the average energy of the lost particles is higher when inelastic collisions are included. Finally, the spatial distribution of the lost particles changes significantly when inelastic collisions are added, with a larger fraction of the lost particles reaching the wall.

  7. Nano iron particles transport in fractured rocks: laboratory and field scale

    NASA Astrophysics Data System (ADS)

    Cohen, Meirav; Weisbrod, Noam

    2017-04-01

    Our study deals with the transport potential of nano iron particles (NIPs) in fractured media. Two different systemswere used to investigate transport on two scales: (1 )a laboratory flow system of a naturally discrete fractured chalk core, 0.43 and 0.18 m in length and diamater, respectively; and (2) a field system of hydraulically connected boreholes located 47 m apart which penetrate a fractured chalk aquifer. We started by testing the transport potential of various NIPs under different conditions. Particle stability experiments were conducted using various NIPs and different stabilizersat two ionic strengths. Overall, four different NIPs and three stabilizers were tested. Particles and solution properties (stability, aggregate/particle size, viscosity and density) were tested in batch experiments, and transport experiments (breakthrough curves (BTCs) and recovery) were conduted in the fractured chalk core. We have learned that the key parameters controlling particle transport are the particle/aggregate size and stability, which govern NIP settling rates and ultimately their migration distance. The governing mechanism controlling NIP transport was found to be sedimentation, and to a much lesser extent, processes such as diffusion, straining or interception. On the basis of these experiments, Carbo-Iron® particles ( 800 nm activated carbon particles doped with nano zero valent iron particles) and Carboxymethyl cellulose (CMC) stabilizer were selected for the field test injection. In the field, Carbo-Iron particles were initially injected into the fractured aquifer using an excess of stabilizer in order to ensure maximum recovery. This resulted in high particle recovery and fast arrival time, similar to the ideal tracer (iodide). The high recovery of the stable particle solution emphasized the importance of particle stability for transport in fractures. To test mobility manipulation potential of the particles and simulate more realistic scenarios, a second field

  8. Effect of weightlessness on colloidal particle transport and segregation in self-organising microtubule preparations.

    PubMed

    Tabony, James; Rigotti, Nathalie; Glade, Nicolas; Cortès, Sandra

    2007-05-01

    Weightlessness is known to effect cellular functions by as yet undetermined processes. Many experiments indicate a role of the cytoskeleton and microtubules. Under appropriate conditions in vitro microtubule preparations behave as a complex system that self-organises by a combination of reaction and diffusion. This process also results in the collective transport and organisation of any colloidal particles present. In large centimetre-sized samples, self-organisation does not occur when samples are exposed to a brief early period of weightlessness. Here, we report both space-flight and ground-based (clinorotation) experiments on the effect of weightlessness on the transport and segregation of colloidal particles and chromosomes. In centimetre-sized containers, both methods show that a brief initial period of weightlessness strongly inhibits particle transport. In miniature cell-sized containers under normal gravity conditions, the particle transport that self-organisation causes results in their accumulation into segregated regions of high and low particle density. The gravity dependence of this behaviour is strongly shape dependent. In square wells, neither self-organisation nor particle transport and segregation occur under conditions of weightlessness. On the contrary, in rectangular canals, both phenomena are largely unaffected by weightlessness. These observations suggest, depending on factors such as cell and embryo shape, that major biological functions associated with microtubule driven particle transport and organisation might be strongly perturbed by weightlessness.

  9. Transport and Attenuation of Particles of Different Density and Surface Charge: A Karst Aquifer Field Study.

    PubMed

    Schiperski, Ferry; Zirlewagen, Johannes; Scheytt, Traugott

    2016-08-02

    Although karst aquifers are far more susceptible to contamination than porous aquifers, with the transport of particulate matter being an important factor, little is known about the attenuation of solutes within karst aquifers and even less about the attenuation of particulate matter. These in situ investigations have therefore aimed to systematically identify the processes that influence the transport and attenuation of particles within a karst aquifer through multitracer testing, using four different types of 1 μm fluorescent particles and the fluorescent dye uranine. Each of the types of particles used were detected at the observed spring, which drains the investigated aquifer. However, the transport behavior varied significantly between the various particles and the uranine dye, with the breakthrough of particles occurring slightly earlier than that of uranine. Attenuation was determined from the tracer recovery and attributed to filtration processes. These processes were affected by the hydrophobicity and surface charge of the particles. Carboxylated polystyrene particles with a density and surface charge comparable to pathogenic microorganisms were found to be mobile in groundwater over a distance of about 3 km. No attenuation was observed for plain silica particles. Particles with these characteristics thus pose a major threat to karst spring water as they might occur as contaminants themselves or facilitate the transport of other contaminants.

  10. Investigating the role of particle shape on colloid transport and retention in saturated porous media (Invited)

    NASA Astrophysics Data System (ADS)

    Li, Y.; Seymour, M.; Chen, G.; Su, C.

    2011-12-01

    Mechanistic understanding of the transport and retention of nanoparticles in porous media is essential both for environmental applications of nanotechnology and assessing the potential environmental impacts of engineered nanomaterials. Engineered and naturally occurring nanoparticles can be found in various shapes including rod-shape carbon nanotubes that have high aspect ratios. Although it is expected that nonspherical shape could play an important role on their transport and retention behaviors, current theoretical models for particle transport in porous media, however, are mostly based on spherical particle shape. In this work, the effect of particle shape on its transport and retention in porous media was evaluated by stretching carboxylate-modified fluorescent polystyrene spheres into rod shapes with aspect ratios of 2:1 and 4:1. Quartz crystal microbalance with dissipation experiments (QCM-D) were conducted to measure the deposition rates of spherical and rod-shaped nanoparticles to the collector (poly-L-lysine coated silica sensor) surface under favorable conditions. Under unfavorable conditions, the retention of nanoparticles in a microfluidic flow cell packed with glass beads was studied with the use of laser scanning cytometry (LSC). Under favorable conditions, the spherical particles displayed a significantly higher deposition rate compared with that of the rod-shaped particles. Theoretical analysis based on Smoluchowski-Levich approximation indicated that the rod-shaped particles largely counterbalance the attractive energies due to higher hydrodynamic forces and torques experienced during their transport and rotation. Under unfavorable conditions, significantly more attachment was observed for rod-shaped particles than spherical particles, and the attachment rate of the rod-shaped particles showed an increasing trend with the increase in injection volume. Rod-shaped particles were found to be less sensitive to the surface charge heterogeneity change

  11. Investigating the role of particle shape on colloid transport and retention in saturated porous media (Invited)

    NASA Astrophysics Data System (ADS)

    Li, Y.; Seymour, M.; Chen, G.; Su, C.

    2013-12-01

    Mechanistic understanding of the transport and retention of nanoparticles in porous media is essential both for environmental applications of nanotechnology and assessing the potential environmental impacts of engineered nanomaterials. Engineered and naturally occurring nanoparticles can be found in various shapes including rod-shape carbon nanotubes that have high aspect ratios. Although it is expected that nonspherical shape could play an important role on their transport and retention behaviors, current theoretical models for particle transport in porous media, however, are mostly based on spherical particle shape. In this work, the effect of particle shape on its transport and retention in porous media was evaluated by stretching carboxylate-modified fluorescent polystyrene spheres into rod shapes with aspect ratios of 2:1 and 4:1. Quartz crystal microbalance with dissipation experiments (QCM-D) were conducted to measure the deposition rates of spherical and rod-shaped nanoparticles to the collector (poly-L-lysine coated silica sensor) surface under favorable conditions. Under unfavorable conditions, the retention of nanoparticles in a microfluidic flow cell packed with glass beads was studied with the use of laser scanning cytometry (LSC). Under favorable conditions, the spherical particles displayed a significantly higher deposition rate compared with that of the rod-shaped particles. Theoretical analysis based on Smoluchowski-Levich approximation indicated that the rod-shaped particles largely counterbalance the attractive energies due to higher hydrodynamic forces and torques experienced during their transport and rotation. Under unfavorable conditions, significantly more attachment was observed for rod-shaped particles than spherical particles, and the attachment rate of the rod-shaped particles showed an increasing trend with the increase in injection volume. Rod-shaped particles were found to be less sensitive to the surface charge heterogeneity change

  12. Single particle tracking reveals biphasic transport during nanorod magnetophoresis through extracellular matrix.

    PubMed

    Mair, L O; Superfine, R

    2014-06-21

    Magnetic drug targeting has been proposed as a means of efficiently targeting drugs to tumors. However, the extracellular matrix (ECM) remains a significant barrier to long-range magnetophoretic transport through the tumor volume. While ensemble measurements of nanoparticle magnetophoresis have been reported, a single particle level understanding of magnetophoretic transport remains at large. We quantify nanorod magnetophoresis through ECM based on single particle observations. We find that smaller diameter particles achieve larger velocities through ECM despite experiencing smaller magnetic forces. Additionally, two interesting dynamics are elucidated. First, 18 nm diameter nanorods experience bimodal stick-slip motion through ECM during static field magnetophoresis, while similar bimodal transport is not observed for 55 nm nor 200 nm diameter nanorods. Second, smaller particles experience larger deviations in their orientation angle with respect to the magnetic field. This work elucidates important dynamics of nanoparticle transport through complex, porous biomaterials that may go unnoticed during ensemble measurements.

  13. Single Particle Tracking Reveals Biphasic Transport During Nanorod Magnetophoresis Through Extracellular Matrix

    PubMed Central

    Mair, L.O.; Superfine, R.

    2014-01-01

    Magnetic drug targeting has been proposed as a means of efficiently targeting drugs to tumors. However, the extracellular matrix (ECM) remains a significant barrier to long-range magnetophoretic transport through the tumor volume. While ensemble measurements of nanoparticle magnetophoresis have been reported, a single particle level understanding of magnetophoretic transport remains at large. We quantify nanorod magnetophoresis through ECM based on single particle observations. We find that smaller diameter particles achieve larger velocities through ECM despite experiencing smaller magnetic forces. Additionally, two interesting dynamics are elucidated. First, 18 nm diameter nanorods experience bimodal stick-slip motion through ECM during static field magnetophoresis, while similar bimodal transport is not observed for 55 nm nor 200 nm diameter nanorods. Second, smaller particles experience larger deviations in their orientation angle with respect to the magnetic field. This work elucidates important dynamics of nanoparticle transport through complex, porous biomaterials that may go unnoticed during ensemble measurements. PMID:24744160

  14. Review of the facile (F/sub N/) method in particle transport theory

    SciTech Connect

    Garcia, R.D.M.

    1985-10-01

    The facile (F/sub N/) method for solving particle transport problems is reviewed. The fundamentals of the method are summarized, recent developments are discussed and several applications of the method are described in detail.

  15. Changes in particle transport as a result of resonant magnetic perturbations in DIII-D

    SciTech Connect

    Mordijck, S.; Doyle, E. J.; Rhodes, T. L.; Zeng, L.; Wang, G.; McKee, G. R.; Moyer, R. A.; Commaux, N.; Fenstermacher, M. E.; Gentle, K. W.; Reimerdes, H.; Schmitz, O.; Solomon, W. M.; Staebler, G. M.

    2012-05-15

    In this paper, we introduce the first direct perturbed particle transport measurements in resonant magnetic perturbation (RMP) H-mode plasmas. The perturbed particle transport increases as a result of application of RMP deep into the core. In the core, a large reduction in E Multiplication-Sign B shear to a value below the linear growth rate, in conjunction with increasing density fluctuations, is consistent with an increase in turbulent particle transport. In the edge, the changes in turbulent particle transport are less obvious. There is a clear correlation between the linear growth rates and the density fluctuations measured at different scales, but it is uncertain which is the cause and which is the consequence.

  16. Changes in particle transport as a result of resonant magnetic perturbations in DIII-D

    SciTech Connect

    Mordijck, S.; Doyle, E. J.; McKee, G. R.; Moyer, R.A.; Rhodes, T. L.; Zeng, L.; Commaux, Nicolas JC; Fenstermacher, M. E.; Gentle, T. K.; Reimerdes, H.; Schmitz, O.; Solomon, W. M.; Staebler, G. M.; Wang, G. Y.

    2012-01-01

    In this paper, we introduce the first direct perturbed particle transport measurements in resonant magnetic perturbation (RMP) H-mode plasmas. The perturbed particle transport increases as a result of application of RMP deep into the core. In the core, a large reduction in E x B shear to a value below the linear growth rate, in conjunction with increasing density fluctuations, is consistent with an increase in turbulent particle transport. In the edge, the changes in turbulent particle transport are less obvious. There is a clear correlation between the linear growth rates and the density fluctuations measured at different scales, but it is uncertain which is the cause and which is the consequence.

  17. Small particle transport across turbulent nonisothermal boundary layers

    NASA Technical Reports Server (NTRS)

    Rosner, D. E.; Fernandez De La Mora, J.

    1982-01-01

    The interaction between turbulent diffusion, Brownian diffusion, and particle thermophoresis in the limit of vanishing particle inertial effects is quantitatively modeled for applications in gas turbines. The model is initiated with consideration of the particle phase mass conservation equation for a two-dimensional boundary layer, including the thermophoretic flux term directed toward the cold wall. A formalism of a turbulent flow near a flat plate in a heat transfer problem is adopted, and variable property effects are neglected. Attention is given to the limit of very large Schmidt numbers and the particle concentration depletion outside of the Brownian sublayer. It is concluded that, in the parameter range of interest, thermophoresis augments the high Schmidt number mass-transfer coefficient by a factor equal to the product of the outer sink and the thermophoretic suction.

  18. The role of particle collisions in pneumatic transport

    NASA Technical Reports Server (NTRS)

    Mastorakos, E.; Louge, M.; Jenkins, J. T.

    1989-01-01

    A model of dilute gas-solid flow in vertical risers is developed in which the particle phase is treated as a granular material, the balance equations for rapid granular flow are modified to incorporate the drag force from the gas, and boundary conditions, based on collisional exchanges of momentum and energy at the wall, are employed. In this model, it is assumed that the particle fluctuations are determined by inter-particle collisions only and that the turbulence of the gas is unaffected by the presence of the particles. The model is developed in the context of, but not limited to, steady, fully developed flow. A numerical solution of the resulting governing equations provides concentration profiles generally observed in dilute pneumatic flow, velocity profiles in good agreement with the measurements of Tsuji, et al. (1984), and an explanation for the enhancement of turbulence that they observed.

  19. The role of particle collisions in pneumatic transport

    NASA Astrophysics Data System (ADS)

    Mastorakos, E.; Louge, M.; Jenkins, J. T.

    1989-09-01

    A model of dilute gas-solid flow in vertical risers is developed in which the particle phase is treated as a granular material, the balance equations for rapid granular flow are modified to incorporate the drag force from the gas, and boundary conditions, based on collisional exchanges of momentum and energy at the wall, are employed. In this model, it is assumed that the particle fluctuations are determined by inter-particle collisions only and that the turbulence of the gas is unaffected by the presence of the particles. The model is developed in the context of, but not limited to, steady, fully developed flow. A numerical solution of the resulting governing equations provides concentration profiles generally observed in dilute pneumatic flow, velocity profiles in good agreement with the measurements of Tsuji, et al. (1984), and an explanation for the enhancement of turbulence that they observed.

  20. Steady State Chaotic Magnetic Fields and Particle Dynamics Cross-field Transport of Particles in Chaotic Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Dasgupta, B.; Ram, A.

    2009-12-01

    The observed propagation of cosmic rays in the interplanetary space cannot be explained unless there is diffusion of the energetic particles across the interplanetary magnetic field. The cross-field diffusion of cosmic rays is assumed to be due to the chaotic nature of the interplanetary/intergalactic magnetic fields. Among the classic works on this subject have been those of Parker [1] and Jokipii [2]. Parker considered the passage of cosmic ray particles and energetic solar particles in a large scale magnetic field containing small scale irregularities. In the context of cosmic ray propagation, Jokipii considered a small fluctuating component, added on to a uniform magnetic field, to study the spatial transport of particles. We consider asymmetric, steady-state magnetic fields, in three spatial dimensions, generated by currents flowing in circular loops and straight lines [3]. We find that under very special circumstances can one generate large scale coherent magnetic fields. In general, even simple asymmetric current configurations generate spatially chaotic magnetic fields in three-dimensions. The motion of charged particles in these chaotic magnetic fields is quite coherent. This is a surprising result as one generally assumes that spatially chaotic magnetic fields will give rise to chaotic particle motion. So chaotic magnetic fields by themselves do not lead to cross-field transport. However, if we consider a current system, e.g., a current loop, embedded in a uniform magnetic field then a particle can undergo cross-field transport. For cross-field diffusion of charged particles it is necessary that the magnetic field lines be three dimensional. [1] E.N. Parker, Planet. Space Sci. 13, 9, (1965) [2] J.R. Jokipii, Astrophys. J. 146, 480, (1966). [3] A.K. Ram and B. Dasgupta, in 35th EPS Conference on Plasma Phys. Hersonissos, ECA Vol.32D, O-4.059 (2008); and Eos Trans. AGU 88 (52), Fall Meet. Suppl. Abstract NG21B-0522 (2007).

  1. Simulation of charged particle transport on the MPP

    NASA Technical Reports Server (NTRS)

    Earl, James A.

    1987-01-01

    Computations of cosmic ray transport based upon finite difference methods are afflicted by instabilities, inaccuracies, and artifacts. To avoid these problems, a Monte Carlo formulation was developed which is closely related not only to the finite difference formulation, but also to the underlying physics of transport phenomena. Implementations of this approach are currently running on the Massively Parallel Processor at Goddard, whose enormous computing power overwhelms the poor statistical accuracy that usually limits the use of stochastic methods. In a Monte Carlo simulation of rectilinear transport, the coherent and diffusive effects that appeared are in good quantitative agreement with both finite difference and analytical calculations.

  2. Monte Carlo Particle Transport: Algorithm and Performance Overview

    SciTech Connect

    Gentile, N; Procassini, R; Scott, H

    2005-06-02

    Monte Carlo methods are frequently used for neutron and radiation transport. These methods have several advantages, such as relative ease of programming and dealing with complex meshes. Disadvantages include long run times and statistical noise. Monte Carlo photon transport calculations also often suffer from inaccuracies in matter temperature due to the lack of implicitness. In this paper we discuss the Monte Carlo algorithm as it is applied to neutron and photon transport, detail the differences between neutron and photon Monte Carlo, and give an overview of the ways the numerical method has been modified to deal with issues that arise in photon Monte Carlo simulations.

  3. Collisional and chaotic transport of energetic particles in toroidal plasma. [Annual] progress report

    SciTech Connect

    Cary, J.R.; Shasharina, S.G.

    1993-03-01

    Progress is reported in three general areas of confinement plasma physics: (1) An accurate theory was developed for the trapping/detrapping process in tokamaks with ripple and stellarators. (2) The alpha particle distribution was determined for the situation where both collisions and collisionless chaotic (ripple) transport are present. Transport of the toroidally trapped particles in rippled tokamaks with up-down asymmetry was studied.

  4. Directed Magnetic Particle Transport above Artificial Magnetic Domains Due to Dynamic Magnetic Potential Energy Landscape Transformation.

    PubMed

    Holzinger, Dennis; Koch, Iris; Burgard, Stefan; Ehresmann, Arno

    2015-07-28

    An approach for a remotely controllable transport of magnetic micro- and/or nanoparticles above a topographically flat exchange-bias (EB) thin film system, magnetically patterned into parallel stripe domains, is presented where the particle manipulation is achieved by sub-mT external magnetic field pulses. Superparamagnetic core-shell particles are moved stepwise by the dynamic transformation of the particles' magnetic potential energy landscape due to the external magnetic field pulses without affecting the magnetic state of the thin film system. The magnetic particle velocity is adjustable in the range of 1-100 μm/s by the design of the substrate's magnetic field landscape (MFL), the particle-substrate distance, and the magnitude of the applied external magnetic field pulses. The agglomeration of magnetic particles is avoided by the intrinsic magnetostatic repulsion of particles due to the parallel alignment of the particles' magnetic moments perpendicular to the transport direction and parallel to the surface normal of the substrate during the particle motion. The transport mechanism is modeled by a quantitative theory based on the precise knowledge of the sample's MFL and the particle-substrate distance.

  5. DANTSYS: A diffusion accelerated neutral particle transport code system

    SciTech Connect

    Alcouffe, R.E.; Baker, R.S.; Brinkley, F.W.; Marr, D.R.; O`Dell, R.D.; Walters, W.F.

    1995-06-01

    The DANTSYS code package includes the following transport codes: ONEDANT, TWODANT, TWODANT/GQ, TWOHEX, and THREEDANT. The DANTSYS code package is a modular computer program package designed to solve the time-independent, multigroup discrete ordinates form of the boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, one or more Solver Modules, and the Edit Module, respectively. The Input and Edit Modules are very general in nature and are common to all the Solver Modules. The ONEDANT Solver Module contains a one-dimensional (slab, cylinder, and sphere), time-independent transport equation solver using the standard diamond-differencing method for space/angle discretization. Also included in the package are solver Modules named TWODANT, TWODANT/GQ, THREEDANT, and TWOHEX. The TWODANT Solver Module solves the time-independent two-dimensional transport equation using the diamond-differencing method for space/angle discretization. The authors have also introduced an adaptive weighted diamond differencing (AWDD) method for the spatial and angular discretization into TWODANT as an option. The TWOHEX Solver Module solves the time-independent two-dimensional transport equation on an equilateral triangle spatial mesh. The THREEDANT Solver Module solves the time independent, three-dimensional transport equation for XYZ and RZ{Theta} symmetries using both diamond differencing with set-to-zero fixup and the AWDD method. The TWODANT/GQ Solver Module solves the 2-D transport equation in XY and RZ symmetries using a spatial mesh of arbitrary quadrilaterals. The spatial differencing method is based upon the diamond differencing method with set-to-zero fixup with changes to accommodate the generalized spatial meshing.

  6. Particle tracking approach for transport in three-dimensional discrete fracture networks: Particle tracking in 3-D DFNs

    SciTech Connect

    Makedonska, Nataliia; Painter, Scott L.; Bui, Quan M.; Gable, Carl W.; Karra, Satish

    2015-09-16

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates mass balance-related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces, and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. As a result, we demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.

  7. Particle tracking approach for transport in three-dimensional discrete fracture networks: Particle tracking in 3-D DFNs

    DOE PAGES

    Makedonska, Nataliia; Painter, Scott L.; Bui, Quan M.; ...

    2015-09-16

    The discrete fracture network (DFN) model is a method to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. We present a new particle tracking capability, which is adapted to control volume (Voronoi polygons) flow solutions on unstructured grids (Delaunay triangulations) on three-dimensional DFNs. The locally mass-conserving finite-volume approach eliminates massmore » balance-related problems during particle tracking. The scalar fluxes calculated for each control volume face by the flow solver are used to reconstruct a Darcy velocity at each control volume centroid. The groundwater velocities can then be continuously interpolated to any point in the domain of interest. The control volumes at fracture intersections are split into four pieces, and the velocity is reconstructed independently on each piece, which results in multiple groundwater velocities at the intersection, one for each fracture on each side of the intersection line. This technique enables detailed particle transport representation through a complex DFN structure. Verified for small DFNs, the new simulation capability enables numerical experiments on advective transport in large DFNs to be performed. As a result, we demonstrate this particle transport approach on a DFN model using parameters similar to those of crystalline rock at a proposed geologic repository for spent nuclear fuel in Forsmark, Sweden.« less

  8. Particle Acceleration and Transport in 3D Reconnection: Implications for the Heliosheath

    NASA Astrophysics Data System (ADS)

    Dahlin, J.; Drake, J. F.; Swisdak, M. M.

    2012-12-01

    We present results from 3D kinetic simulations of magnetic reconnection aimed at addressing the problem of particle transport and acceleration in the heliosheath. It has recently been suggested that sectored field in the heliosheath reconnects, generating magnetic islands which would accelerate and trap energetic particles. A kinetic treatment is necessary to capture vital aspects of this system, as feedback from particle heating significantly impacts the reconnection dynamics. Our 3D approach is also capable of producing the complex island structures and stochastic fields which are not captured in 2D. In our new simulations, we find that particles may be trapped inside 3D magnetic islands for a significant amount of time. We calculate diffusion coefficients over the full range of particle rigidity and find that transport in the transverse heliographic direction is greatly suppressed. We also examine particle acceleration during 3D reconnection, presenting energy spectra and evaluating the relative importance of different acceleration mechanisms.

  9. Interacting particles in a periodically moving potential: traveling wave and transport.

    PubMed

    Chatterjee, Rakesh; Chatterjee, Sakuntala; Pradhan, Punyabrata; Manna, S S

    2014-02-01

    We study a system of interacting particles in a periodically moving external potential, within the simplest possible description of paradigmatic symmetric exclusion process on a ring. The model describes diffusion of hardcore particles where the diffusion dynamics is locally modified at a uniformly moving defect site, mimicking the effect of the periodically moving external potential. The model, though simple, exhibits remarkably rich features in particle transport, such as polarity reversal and double peaks in particle current upon variation of defect velocity and particle density. By tuning these variables, the most efficient transport can be achieved in either direction along the ring. These features can be understood in terms of a traveling density wave propagating in the system. Our results could be experimentally tested, e.g., in a system of colloidal particles driven by a moving optical tweezer.

  10. Interplanetary pitch angle scattering and coronal transport of solar energetic particles - New information from Helios

    NASA Technical Reports Server (NTRS)

    Bieber, J. W.; Earl, J. A.; Green, G.; Kunow, H.; Mueller-Mellin, R.; Wibberenz, G.

    1980-01-01

    In the present paper, solar particle data from the Kiel experiment on Helios 2 at 0.5 AU are compared with the predictions of a model describing the coherent interplanetary transport of neutral particles. Good agreement is established for an event in March 1978 involving 0.5 MeV electrons and 5 MeV protons.

  11. FACTORS IN GEOTROPOSPHERIC PARTICLE-GAS TRANSPORT OF SEMIVOLATILE ORGANIC COMPOUNDS

    EPA Science Inventory

    Semivolatile organic compounds (SVOCs) can exist in solid, liquid, or gas phases under ambient environmental conditions. The geotropospheric transport of SVOCs varies according to the particle type. Two classes of SVOCs and two types of particles were analyzed to determine possib...

  12. NANO-PARTICLE TRANSPORT AND DEPOSITION IN BIFURCATING TUBES WITH DIFFERENT INLET CONDITIONS

    EPA Science Inventory

    Transport and deposition of ultrafine particles in straight, bend and bifurcating tubes are considered for different inlet Reynolds numbers, velocity profiles, and particle sizes i.e., 1 nm= =150 nm. A commercial finite-volume code with user-supplied programs was validated with a...

  13. NANO-PARTICLE TRANSPORT AND DEPOSITION IN BIFURCATING TUBES WITH DIFFERENT INLET CONDITIONS

    EPA Science Inventory

    Transport and deposition of ultrafine particles in straight, bend and bifurcating tubes are considered for different inlet Reynolds numbers, velocity profiles, and particle sizes i.e., 1 nm= =150 nm. A commercial finite-volume code with user-supplied programs was validated with a...

  14. FACTORS IN GEOTROPOSPHERIC PARTICLE-GAS TRANSPORT OF SEMIVOLATILE ORGANIC COMPOUNDS

    EPA Science Inventory

    Semivolatile organic compounds (SVOCs) can exist in solid, liquid, or gas phases under ambient environmental conditions. The geotropospheric transport of SVOCs varies according to the particle type. Two classes of SVOCs and two types of particles were analyzed to determine possib...

  15. Simulation of Neutral Particle Transport During HiPIMS

    NASA Astrophysics Data System (ADS)

    Trieschmann, Jan; Gallian, Sara; Brinkmann, Ralf Peter; Mussenbrock, Thomas

    2014-10-01

    In this work the importance of the knowledge of the spatial distribution, its temporal evolution as well as their energy distribution of heavy particles within sputtering processes is discussed. To describe these discharges - typically operated at very low pressures below 1 Pa - specific modeling approaches are required. Our approach comprises a three-dimensional kinetic Lagrangian description of neutral particles. A modified version of the direct simulation Monte Carlo (DSMC) code dsmcFoam is used, with the aim to describe the evolution of background and sputtered particles of a High Power Impulse Magnetron Sputtering (HiPIMS) process in a research reactor. Emphasize is put on the influence of the initial angular distribution of sputtered particles, as well as their energy distribution and its angular dependence. Based on the work of Stepanova and Dew a modified Thompson energy distribution is used. Differently distributed sputtered particles provide densities and fluxes concerning the corresponding film formation. This work is supported by the German Research Foundation in the frame of the Collaborative Research Centre TRR 87.

  16. Radiation Transport Through a Particle Laden Turbulent Flow

    NASA Astrophysics Data System (ADS)

    Torres, Hilario; Iaccarino, Gianluca

    2016-11-01

    Direct numerical simulations of a turbulent duct flow laden with small particles was performed at several Reynolds and Stokes numbers. After the flow reached a statistically stationary state the instantaneous particle positions were saved at several time steps. Separate radiative heat transfer calculations were performed to study the amount of absorbed radiation and the local heat flux. The radiative source was considered outside of the duct, and one wall contained a window from which thermal radiation streamed through. The fluid was treated as transparent and the instantaneous particle positions obtained from the DNS where used to build Eulerian absorption and scattering fields. A Monte Carlo ray tracing code has been developed and used to solve for the radiative intensity, incident radiation, and heat flux inside of the domain. The qualitative behavior of the radiation fields as the particle positions change due to the turbulence are discussed. The effects of changes in the resolution of the Eulerian mesh used to convert the Lagrangian particles into absorption and scattering fields are also presented. The sensitivity of the amount of total absorbed radiation in the domain is also discussed in both of the previously mentioned cases.

  17. Third-order TRANSPORT: A computer program for designing charged particle beam transport systems

    SciTech Connect

    Carey, D.C.; Brown, K.L.; Rothacker, F.

    1995-05-01

    TRANSPORT has been in existence in various evolutionary versions since 1963. The present version of TRANSPORT is a first-, second-, and third-order matrix multiplication computer program intended for the design of static-magnetic beam transport systems. This report discusses the following topics on TRANSPORT: Mathematical formulation of TRANSPORT; input format for TRANSPORT; summaries of TRANSPORT elements; preliminary specifications; description of the beam; physical elements; other transformations; assembling beam lines; operations; variation of parameters for fitting; and available constraints -- the FIT command.

  18. Energetic Particle Transport in Compact Quasi-axisymmetric Stellarators

    SciTech Connect

    Redi, M.H.; Mynick, H.E.; Suewattana, M.; White, R.B.; Zarnstorff, M.C.; Isaev, M.Yu.; Mikhailov, M.I.; Subbotin, A.A.

    1999-03-01

    Hamiltonian coordinate, guiding-center code calculations of the confinement of suprathermal ions in quasi-axisymmetric stellarator (QAS) designs have been carried out to evaluate the attractiveness of compact configurations which are optimized for ballooning stability. A new stellarator particle-following code is used to predict ion loss rates and particle confinement for thermal and neutral beam ions in a small experiment with R = 145 cm, B = 1-2 T and for alpha particles in a reactor-size device. In contrast to tokamaks, it is found that high edge poloidal flux has limited value in improving ion confinement in QAS, since collisional pitch-angle scattering drives ions into ripple wells and stochastic field regions, where they are quickly lost. The necessity for reduced stellarator ripple fields is emphasized. The high neutral beam ion loss predicted for these configurations suggests that more interesting physics could be explored with an experiment of less constrained size and magnetic field geometry.

  19. A baker's dozen of new particle flows for nonlinear filters, Bayesian decisions and transport

    NASA Astrophysics Data System (ADS)

    Daum, Fred; Huang, Jim

    2015-05-01

    We describe a baker's dozen of new particle flows to compute Bayes' rule for nonlinear filters, Bayesian decisions and learning as well as transport. Several of these new flows were inspired by transport theory, but others were inspired by physics or statistics or Markov chain Monte Carlo methods.

  20. Charged-particle transport in turbulent astrophysical plasmas

    NASA Technical Reports Server (NTRS)

    Newman, C. E., Jr.

    1972-01-01

    The effect of electromagnetic fluctuations, or plasma turbulence, on the motion of the individual particles in a plasma is investigated. Two alternative methods are used to find a general equation governing the time-evolution of a distribution of charged particles subject to both an external force field and the random fields of the fluctuations. It is found that, for the high-temperature, low-density plasmas frequently encountered in the study of astrophysics, the presence of even a small amount of turbulence can have a very important effect on the behavior of the plasma. Two problems in which turbulence plays an important role are treated.

  1. Influence of clay particles on the transport and retention of titanium dioxide nanoparticles in quartz sand.

    PubMed

    Cai, Li; Tong, Meiping; Wang, Xueting; Kim, Hyunjung

    2014-07-01

    This study investigated the influence of two representative suspended clay particles, bentonite and kaolinite, on the transport of titanium dioxide nanoparticles (nTiO2) in saturated quartz sand in both NaCl (1 and 10 mM ionic strength) and CaCl2 solutions (0.1 and 1 mM ionic strength) at pH 7. The breakthrough curves of nTiO2 with bentonite or kaolinite were higher than those without the presence of clay particles in NaCl solutions, indicating that both types of clay particles increased nTiO2 transport in NaCl solutions. Moreover, the enhancement of nTiO2 transport was more significant when bentonite was present in nTiO2 suspensions relative to kaolinite. Similar to NaCl solutions, in CaCl2 solutions, the breakthrough curves of nTiO2 with bentonite were also higher than those without clay particles, while the breakthrough curves of nTiO2 with kaolinite were lower than those without clay particles. Clearly, in CaCl2 solutions, the presence of bentonite in suspensions increased nTiO2 transport, whereas, kaolinite decreased nTiO2 transport in quartz sand. The attachment of nTiO2 onto clay particles (both bentonite and kaolinite) were observed under all experimental conditions. The increased transport of nTiO2 in most experimental conditions (except for kaolinite in CaCl2 solutions) was attributed mainly to the clay-facilitated nTiO2 transport. The straining of larger nTiO2-kaolinite clusters yet contributed to the decreased transport (enhanced retention) of nTiO2 in divalent CaCl2 solutions when kaolinite particles were copresent in suspensions.

  2. The absorption of trapped particles by the inner satellites of Jupiter and the radial diffusion coefficient of particle transport

    NASA Technical Reports Server (NTRS)

    Mogro-Campero, A.; Fillius, W.

    1976-01-01

    The process of trapped particle absorption by the inner Jovian satellites is considered in detail taking into account both the particle and satellite motions in a magnetic dipole field which is displaced from the center of the planet and tilted with respect to the planetary rotation axis. An expression is derived for computing the sweeping time at a given satellite, defined as the time required for the satellite to sweep up a given fraction of the trapped particles within its sweeping region. By making use of the sweeping time and the radial diffusion equation of particle transport approximate expressions for the diffusion coefficient are derived. Measurements obtained by Pioneer 10 are then used to obtain estimates of the diffusion coefficient at the orbits of Io and Europa. We find that the diffusion coefficient is a function of energy and magnetic latitude for electrons in the energy range 0.7-14 MeV.

  3. Test particle study of ion transport in drift type turbulence

    SciTech Connect

    Vlad, M.; Spineanu, F.

    2013-12-15

    Ion transport regimes in drift type turbulence are determined in the frame of a realistic model for the turbulence spectrum based on numerical simulations. The model includes the drift of the potential with the effective diamagnetic velocity, turbulence anisotropy, and dominant waves. The effects of the zonal flow modes are also analyzed. A semi-analytical method that is able to describe trajectory stochastic trapping or eddying is used for obtaining the transport coefficients as function of the parameters of the turbulence. Analytical approximations of the transport coefficients are derived from the results. They show the transition from Bohm to gyro-Bohm scaling as plasma size increases in very good agreement with the numerical simulations.

  4. The Random Ray Method for neutral particle transport

    NASA Astrophysics Data System (ADS)

    Tramm, John R.; Smith, Kord S.; Forget, Benoit; Siegel, Andrew R.

    2017-08-01

    A new approach to solving partial differential equations (PDEs) based on the method of characteristics (MOC) is presented. The Random Ray Method (TRRM) uses a stochastic rather than deterministic discretization of characteristic tracks to integrate the phase space of a problem. TRRM is potentially applicable in a number of transport simulation fields where long characteristic methods are used, such as neutron transport and gamma ray transport in reactor physics as well as radiative transfer in astrophysics. In this study, TRRM is developed and then tested on a series of exemplar reactor physics benchmark problems. The results show extreme improvements in memory efficiency compared to deterministic MOC methods, while also reducing algorithmic complexity, allowing for a sparser computational grid to be used while maintaining accuracy.

  5. Observation of a Spontaneous Particle-Transport Barrier in the HL-2A Tokamak

    SciTech Connect

    Xiao, W. W.; Ding, X. T.; Yao, L. H.; Feng, B. B.; Song, X. M.; Zhou, Y.; Liu, Z. T.; Yuan, B. S.; Sun, H. J.; Ji, X. Q.; Gao, Y. D.; Li, Y. G.; Yan, L. W.; Yang, Q. W.; Liu, Yi; Dong, J. Q.; Duan, X. R.; Liu, Yong; Pan, C. H.; Zou, X. L.

    2010-05-28

    Using the profile analysis, the density perturbation transport analysis, and the Doppler reflectometry measurement, for the first time a spontaneous and steady-state particle-transport barrier has been evidenced in the Ohmic plasmas in the HL-2A tokamak with no externally applied momentum or particle input except the gas puffing. A threshold in density has been found for the observation of the barrier. The particle diffusivity is well-like, and the convection is found to be inward outside the well and outward inside the well. The formation of the barrier coincides with the transition between the trapped electron mode and the ion temperature gradient driven mode.

  6. Mechanism for Particle Transport and Size Sorting via Low-Frequency Vibrations

    NASA Technical Reports Server (NTRS)

    Sherrit, Stewart; Scott, James S.; Bar-Cohen, Yoseph; Badescu, Mircea; Bao, Xiaoqi

    2010-01-01

    There is a need for effective sample handling tools to deliver and sort particles for analytical instruments that are planned for use in future NASA missions. Specifically, a need exists for a compact mechanism that allows transporting and sieving particle sizes of powdered cuttings and soil grains that may be acquired by sampling tools such as a robotic scoop or drill. The required tool needs to be low mass and compact to operate from such platforms as a lander or rover. This technology also would be applicable to sample handling when transporting samples to analyzers and sorting particles by size.

  7. Particle acceleration and transport in the solar atmosphere

    NASA Astrophysics Data System (ADS)

    Kontar, Eduard

    2016-07-01

    During periods of sporadic flare activity, the Sun releases energy stored in the magnetic field into the plasma of the solar atmosphere. This is an extremely efficient process, with a large fraction of the magnetic energy going into plasma particles. The solar flares are accompanied by prompt electromagnetic emission virtually over the entire electromagnetic spectrum from gamma-rays down to radio frequencies. The Sun, through its activity, also plays a driving role in the Sun-Earth system that substantially influences geophysical space. Solar flare energetic particles from the Sun are detected in interplanetary space by in-situ measurements making them a vital component of the single Sun-Earth system. Although a qualitative picture is generally agreed upon, many processes solar flare processes are poorly understood. Specifically, the processes of acceleration and propagation of energetic particles interacting on various physical scales remain major challenges in solar physics and basic plasma physics. In the talk, I will review the current understanding of solar flare energetic particles focusing on recent observational progress, which became possible due to the numerous spacecraft and ground-based observations.

  8. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

    SciTech Connect

    Ma, Kwan-Liu

    2011-12-21

    In this project, we have developed techniques for visualizing large-scale time-varying multivariate particle and field data produced by the GPS_TTBP team. Our basic approach to particle data visualization is to provide the user with an intuitive interactive interface for exploring the data. We have designed a multivariate filtering interface for scientists to effortlessly isolate those particles of interest for revealing structures in densely packed particles as well as the temporal behaviors of selected particles. With such a visualization system, scientists on the GPS-TTBP project can validate known relationships and temporal trends, and possibly gain new insights in their simulations. We have tested the system using over several millions of particles on a single PC. We will also need to address the scalability of the system to handle billions of particles using a cluster of PCs. To visualize the field data, we choose to use direct volume rendering. Because the data provided by PPPL is on a curvilinear mesh, several processing steps have to be taken. The mesh is curvilinear in nature, following the shape of a deformed torus. Additionally, in order to properly interpolate between the given slices we cannot use simple linear interpolation in Cartesian space but instead have to interpolate along the magnetic field lines given to us by the scientists. With these limitations, building a system that can provide an accurate visualization of the dataset is quite a challenge to overcome. In the end we use a combination of deformation methods such as deformation textures in order to fit a normal torus into their deformed torus, allowing us to store the data in toroidal coordinates in order to take advantage of modern GPUs to perform the interpolation along the field lines for us. The resulting new rendering capability produces visualizations at a quality and detail level previously not available to the scientists at the PPPL. In summary, in this project we have

  9. Vertical Transport of Aerosol Particles across Mountain Topography near the Los Angeles Basin

    NASA Astrophysics Data System (ADS)

    Murray, J. J.; Schill, S.; Freeman, S.; Bertram, T. H.; Lefer, B. L.

    2015-12-01

    Transport of aerosol particles is known to affect air quality and is largely dependent on the characteristic topography of the surrounding region. To characterize this transport, aerosol number distributions were collected with an Ultra-High Sensitivity Aerosol Spectrometer (UHSAS, DMT) during the 2015 NASA Student Airborne Research Program (SARP) in and around the Los Angeles Basin in Southern California. Increases in particle number concentration and size were observed over mountainous terrain north of Los Angeles County. Chemical analysis and meteorological lagrangian trajectories suggest orographic lifting processes, known as the "chimney effect". Implications for spatial transport and distribution will be discussed.

  10. The fluctuation energy balance in non-suspended fluid-mediated particle transport

    SciTech Connect

    Pähtz, Thomas; Durán, Orencio; Ho, Tuan-Duc; Valance, Alexandre; Kok, Jasper F.

    2015-01-15

    Here, we compare two extreme regimes of non-suspended fluid-mediated particle transport, transport in light and heavy fluids (“saltation” and “bedload,” respectively), regarding their particle fluctuation energy balance. From direct numerical simulations, we surprisingly find that the ratio between collisional and fluid drag dissipation of fluctuation energy is significantly larger in saltation than in bedload, even though the contribution of interparticle collisions to transport of momentum and energy is much smaller in saltation due to the low concentration of particles in the transport layer. We conclude that the much higher frequency of high-energy particle-bed impacts (“splash”) in saltation is the cause for this counter-intuitive behavior. Moreover, from a comparison of these simulations to particle tracking velocimetry measurements which we performed in a wind tunnel under steady transport of fine and coarse sand, we find that turbulent fluctuations of the flow produce particle fluctuation energy at an unexpectedly high rate in saltation even under conditions for which the effects of turbulence are usually believed to be small.

  11. PTV measurements of Lagrangian particle transport by surface gravity wave groups

    NASA Astrophysics Data System (ADS)

    van den Bremer, Ton; Whittaker, Colin; Raby, Alison; Taylor, Paul

    2015-11-01

    We present detailed PTV (particle tracking velocimetry) measurements of the Lagrangian transport and trajectories of neutrally buoyant particles underneath two-dimensional surface gravity wave groups in a laboratory flume. By focussing our attention on wave groups of moderate steepness, we confirm the predictions of standard second-order multi-chromatic wave theory, in which the body of fluid satisfies the potential flow equations. Particles near the surface are transported forwards and their motion is dominated by Stokes drift. Particles at sufficient depth are transported backwards by the Eulerian return current that was first described by Longuet-Higgins & Stewart (1962) and forms an inseparable counterpart of Stokes drift for surface wave groups ensuring the (irrotational) mass balance holds. Finally, we provide experimental validation of a simple scaling relationship, derived based under the assumption of separation of scales, for the transition depth: the depth above which Lagrangian particles are transported forwards by the Stokes drift and below which such particles are transported backwards by the return current. We present results for a range of effective water depths.

  12. Diffusion in pulsar wind nebulae: an investigation using magnetohydrodynamic and particle transport models

    NASA Astrophysics Data System (ADS)

    Porth, O.; Vorster, M. J.; Lyutikov, M.; Engelbrecht, N. E.

    2016-08-01

    We study the transport of high-energy particles in pulsar wind nebulae (PWN) using three-dimensional magnetohydrodynamic (MHD) and test-particle simulations, as well as a Fokker-Planck particle transport model. The latter includes radiative and adiabatic losses, diffusion, and advection on the background flow of the simulated MHD nebula. By combining the models, the spatial evolution of flux and photon index of the X-ray synchrotron emission is modelled for the three nebulae G21.5-0.9, the inner regions of Vela, and 3C 58, thereby allowing us to derive governing parameters: the magnetic field strength, average flow velocity, and spatial diffusion coefficient. For comparison, the nebulae are also modelled with the semi-analytic Kennel & Coroniti model but the Porth et al. model generally yields better fits to the observational data. We find that high velocity fluctuations in the turbulent nebula (downstream of the termination shock) give rise to efficient diffusive transport of particles, with average Péclet number close to unity, indicating that both advection and diffusion play an important role in particle transport. We find that the diffusive transport coefficient of the order of ˜ 2 × 1027(Ls/0.42 Ly) cm2 s- 1 (Ls is the size of the termination shock) is independent of energy up to extreme particle Lorentz factors of γp ˜ 1010.

  13. Focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection

    NASA Technical Reports Server (NTRS)

    Tan, L. C.; Mason, G. M.; Lee, M. A.; Klecker, B.; Ipavich, F. M.

    1992-01-01

    Evidence is presented for focused transport of energetic particles along magnetic field lines draped around a coronal mass ejection. This evidence was obtained with the University of Maryland/Max-Planck-Institute experiment on the ISEE-3 spacecraft during the decay phase of the June 6, 1979, solar particle event. During the early portion of the decay phase of this event, interplanetary magnetic field lines were apparently draped around a coronal mass ejection, leading to a small focusing length on the western flank where ISEE 3 was located. A period of very slow decrease of particle intensity was observed, along with large sunward anisotropy in the solar wind frame, which is inconsistent with predictions of the standard Fokker-Planck equation models for diffusive transport. It was found possible to fit the observations, assuming that focused transport dominates and that the particle pitch angle scattering is isotropic.

  14. Effects of oil dispersants on settling of marine sediment particles and particle-facilitated distribution and transport of oil components.

    PubMed

    Cai, Zhengqing; Fu, Jie; Liu, Wen; Fu, Kunming; O'Reilly, S E; Zhao, Dongye

    2017-01-15

    This work investigated effects of three model oil dispersants (Corexit EC9527A, Corexit EC9500A and SPC1000) on settling of fine sediment particles and particle-facilitated distribution and transport of oil components in sediment-seawater systems. All three dispersants enhanced settling of sediment particles. The nonionic surfactants (Tween 80 and Tween 85) play key roles in promoting particle aggregation. Yet, the effects varied with environmental factors (pH, salinity, DOM, and temperature). Strongest dispersant effect was observed at neutral or alkaline pH and in salinity range of 0-3.5wt%. The presence of water accommodated oil and dispersed oil accelerated settling of the particles. Total petroleum hydrocarbons in the sediment phase were increased from 6.9% to 90.1% in the presence of Corexit EC9527A, and from 11.4% to 86.7% for PAHs. The information is useful for understanding roles of oil dispersants in formation of oil-sediment aggregates and in sediment-facilitated transport of oil and PAHs in marine eco-systems.

  15. Ciliary intraflagellar transport protein 80 balances canonical versus non-canonical hedgehog signaling for osteoblast differentiation

    USDA-ARS?s Scientific Manuscript database

    Mutation of different IFT proteins cause numerous different clinical bone disorders accompanied with or without the disruption of cilia formation. Currently, there is no any effective treatment for these disorders due to lack of understanding in the function and mechanism of these proteins. IFT80 is...

  16. Coupled Particle Transport and Pattern Formation in a Nonlinear Leaky-Box Model

    NASA Technical Reports Server (NTRS)

    Barghouty, A. F.; El-Nemr, K. W.; Baird, J. K.

    2009-01-01

    Effects of particle-particle coupling on particle characteristics in nonlinear leaky-box type descriptions of the acceleration and transport of energetic particles in space plasmas are examined in the framework of a simple two-particle model based on the Fokker-Planck equation in momentum space. In this model, the two particles are assumed coupled via a common nonlinear source term. In analogy with a prototypical mathematical system of diffusion-driven instability, this work demonstrates that steady-state patterns with strong dependence on the magnetic turbulence but a rather weak one on the coupled particles attributes can emerge in solutions of a nonlinearly coupled leaky-box model. The insight gained from this simple model may be of wider use and significance to nonlinearly coupled leaky-box type descriptions in general.

  17. Particle transport and heat loads in NIO1

    SciTech Connect

    Fonnesu, N. Serianni, G.; Veltri, P.; Cavenago, M.

    2016-02-15

    NIO1 is a compact radio frequency ion source designed to generate a 60 kV-135 mA hydrogen negative ion beam and it aims at continuous operation, which implies a detailed thermo-mechanical analysis of the beam-facing components, in particular, the accelerator grids. A 3D analysis of the entire NIO1 beam has been performed for the first time with a fully 3D version of EAMCC, a relativistic particle tracking code for the calculation of the grid power deposition induced by particle impacts. According to the results presented in this paper, secondary and co-extracted electrons cause a non-negligible heat load on the grids, where different high-power density regions, within reasonable sustainable standard limits, are calculated.

  18. Airflow and Particle Transport Through Human Airways: A Systematic Review

    NASA Astrophysics Data System (ADS)

    Kharat, S. B.; Deoghare, A. B.; Pandey, K. M.

    2017-08-01

    This paper describes review of the relevant literature about two phase analysis of air and particle flow through human airways. An emphasis of the review is placed on elaborating the steps involved in two phase analysis, which are Geometric modelling methods and Mathematical models. The first two parts describes various approaches that are followed for constructing an Airway model upon which analysis are conducted. Broad two categories of geometric modelling viz. Simplified modelling and Accurate modelling using medical scans are discussed briefly. Ease and limitations of simplified models, then examples of CT based models are discussed. In later part of the review different mathematical models implemented by researchers for analysis are briefed. Mathematical models used for Air and Particle phases are elaborated separately.

  19. Analysis of Particle Transport Using a Particulate Tracer Modeling

    NASA Astrophysics Data System (ADS)

    Wang, P.; Linker, L. C.; Lung, W.; Batiuk, R. A.

    2002-05-01

    Understanding the transport of dissolved and particulate materials in the Chesapeake Bay estuary is critical to allocating nutrient and sediment load reduction goals to the seven watershed states. A computer simulation of a particulate conservative tracer was conducted to help determine the transport mechanism. Tracers were loaded daily at the fall-line of Potomac River (a middle Bay's tributary). The settling rate is set at 0.1 m/day, with the assumption of neither scour nor re-suspension of tracer from the bed to allow continuous accumulation of tracers on bed. The low settling rate was used to allow tracer to transport widely in the estuary to provide information on the transport of fine particulates such as dead algae. After the tracers reach the mouth of Potomac River, most of them are further transported into the lower main-stem Bay. Flood tide is the main force for tracers transported north to the upper main-stem Bay and to the upstream of non-source rivers. In the main stem of the Bay, there exist concentration gradients from the Potomac River mouth to the opposite shore (the Maryland and Virginia eastern shore), to the lower Bay, and to the upper Bay. Concentration gradients also exist from the fall-line to the mouth in the source river, and from the mouth to the upstream in non-source rivers. These gradients are usually disturbed across trenches, due to a so-called "trench effect". A trench either deposits more or less tracers than its shallower sides, depending on the trench to be hydrologically landward from the source (i.e., the Potomac fall line) or the sub-source (e.g., the Rappahannock River mouth for the trench in the upstream of Rappahannock River), or hydrologically seaward from the source or the sub-source. Depending on the layer (saline water-rich or fresh water-rich) in which tracers reside and the direction (landward or seaward) along which tracers transport, the transport/deposit of tracer may be favored along trench over its shallower sides

  20. Random walk particle tracking simulations of non-Fickian transport in heterogeneous media

    SciTech Connect

    Srinivasan, G. Tartakovsky, D.M. Dentz, M. Viswanathan, H.; Berkowitz, B.; Robinson, B.A.

    2010-06-01

    Derivations of continuum nonlocal models of non-Fickian (anomalous) transport require assumptions that might limit their applicability. We present a particle-based algorithm, which obviates the need for many of these assumptions by allowing stochastic processes that represent spatial and temporal random increments to be correlated in space and time, be stationary or non-stationary, and to have arbitrary distributions. The approach treats a particle trajectory as a subordinated stochastic process that is described by a set of Langevin equations, which represent a continuous time random walk (CTRW). Convolution-based particle tracking (CBPT) is used to increase the computational efficiency and accuracy of these particle-based simulations. The combined CTRW-CBPT approach enables one to convert any particle tracking legacy code into a simulator capable of handling non-Fickian transport.

  1. Proper orthogonal decomposition methods for noise reduction in particle-based transport calculations

    NASA Astrophysics Data System (ADS)

    del-Castillo-Negrete, D.; Spong, D. A.; Hirshman, S. P.

    2008-09-01

    Proper orthogonal decomposition techniques to reduce noise in the reconstruction of the distribution function in particle-based transport calculations are explored. For two-dimensional steady-state problems, the method is based on low rank truncations of the singular value decomposition of a coarse-grained representation of the particle distribution function. For time-dependent two-dimensional problems or three-dimensional time-independent problems, the use of a generalized low-rank approximation of matrices technique is proposed. The methods are illustrated and tested with Monte Carlo particle simulation data of plasma collisional relaxation and guiding-center transport with collisions in a magnetically confined plasma in toroidal geometry. It is observed that the proposed noise reduction methods achieve high levels of smoothness in the particle distribution function by using significantly fewer particles in the computations.

  2. Large Eddy Simulation of Transient Flow, Solidification, and Particle Transport Processes in Continuous-Casting Mold

    NASA Astrophysics Data System (ADS)

    Liu, Zhongqiu; Li, Linmin; Li, Baokuan; Jiang, Maofa

    2014-07-01

    The current study developed a coupled computational model to simulate the transient fluid flow, solidification, and particle transport processes in a slab continuous-casting mold. Transient flow of molten steel in the mold is calculated using the large eddy simulation. An enthalpy-porosity approach is used for the analysis of solidification processes. The transport of bubble and non-metallic inclusion inside the liquid pool is calculated using the Lagrangian approach based on the transient flow field. A criterion of particle entrapment in the solidified shell is developed using the user-defined functions of FLUENT software (ANSYS, Inc., Canonsburg, PA). The predicted results of this model are compared with the measurements of the ultrasonic testing of the rolled steel plates and the water model experiments. The transient asymmetrical flow pattern inside the liquid pool exhibits quite satisfactory agreement with the corresponding measurements. The predicted complex instantaneous velocity field is composed of various small recirculation zones and multiple vortices. The transport of particles inside the liquid pool and the entrapment of particles in the solidified shell are not symmetric. The Magnus force can reduce the entrapment ratio of particles in the solidified shell, especially for smaller particles, but the effect is not obvious. The Marangoni force can play an important role in controlling the motion of particles, which increases the entrapment ratio of particles in the solidified shell obviously.

  3. MCNPX Monte Carlo simulations of particle transport in SiC semiconductor detectors of fast neutrons

    NASA Astrophysics Data System (ADS)

    Sedlačková, K.; Zat'ko, B.; Šagátová, A.; Pavlovič, M.; Nečas, V.; Stacho, M.

    2014-05-01

    The aim of this paper was to investigate particle transport properties of a fast neutron detector based on silicon carbide. MCNPX (Monte Carlo N-Particle eXtended) code was used in our study because it allows seamless particle transport, thus not only interacting neutrons can be inspected but also secondary particles can be banked for subsequent transport. Modelling of the fast-neutron response of a SiC detector was carried out for fast neutrons produced by 239Pu-Be source with the mean energy of about 4.3 MeV. Using the MCNPX code, the following quantities have been calculated: secondary particle flux densities, reaction rates of elastic/inelastic scattering and other nuclear reactions, distribution of residual ions, deposited energy and energy distribution of pulses. The values of reaction rates calculated for different types of reactions and resulting energy deposition values showed that the incident neutrons transfer part of the carried energy predominantly via elastic scattering on silicon and carbon atoms. Other fast-neutron induced reactions include inelastic scattering and nuclear reactions followed by production of α-particles and protons. Silicon and carbon recoil atoms, α-particles and protons are charged particles which contribute to the detector response. It was demonstrated that although the bare SiC material can register fast neutrons directly, its detection efficiency can be enlarged if it is covered by an appropriate conversion layer. Comparison of the simulation results with experimental data was successfully accomplished.

  4. Suspended particle transport through constriction channel with Brownian motion

    NASA Astrophysics Data System (ADS)

    Hanasaki, Itsuo; Walther, Jens H.

    2017-08-01

    It is well known that translocation events of a polymer or rod through pores or narrower parts of micro- and nanochannels have a stochastic nature due to the Brownian motion. However, it is not clear whether the objects of interest need to have a larger size than the entrance to exhibit the deviation from the dynamics of the surrounding fluid. We show by numerical analysis that the particle injection into the narrower part of the channel is affected by thermal fluctuation, where the particles have spherical symmetry and are smaller than the height of the constriction. The Péclet number (Pe) is the order parameter that governs the phenomena, which clarifies the spatio-temporal significance of Brownian motion compared to hydrodynamics. Furthermore, we find that there exists an optimal condition of Pe to attain the highest flow rate of particles relative to the dispersant fluid flow. Our finding is important in science and technology from nanopore DNA sequencers and lab-on-a-chip devices to filtration by porous materials and chromatography.

  5. Transport and fate of microplastic particles in wastewater treatment plants.

    PubMed

    Carr, Steve A; Liu, Jin; Tesoro, Arnold G

    2016-03-15

    Municipal wastewater treatment plants (WWTPs) are frequently suspected as significant point sources or conduits of microplastics to the environment. To directly investigate these suspicions, effluent discharges from seven tertiary plants and one secondary plant in Southern California were studied. The study also looked at influent loads, particle size/type, conveyance, and removal at these wastewater treatment facilities. Over 0.189 million liters of effluent at each of the seven tertiary plants were filtered using an assembled stack of sieves with mesh sizes between 400 and 45 μm. Additionally, the surface of 28.4 million liters of final effluent at three tertiary plants was skimmed using a 125 μm filtering assembly. The results suggest that tertiary effluent is not a significant source of microplastics and that these plastic pollutants are effectively removed during the skimming and settling treatment processes. However, at a downstream secondary plant, an average of one micro-particle in every 1.14 thousand liters of final effluent was counted. The majority of microplastics identified in this study had a profile (color, shape, and size) similar to the blue polyethylene particles present in toothpaste formulations. Existing treatment processes were determined to be very effective for removal of microplastic contaminants entering typical municipal WWTPs.

  6. Transport equations for subdiffusion with nonlinear particle interaction.

    PubMed

    Straka, P; Fedotov, S

    2015-02-07

    We show how the nonlinear interaction effects 'volume filling' and 'adhesion' can be incorporated into the fractional subdiffusive transport of cells and individual organisms. To this end, we use microscopic random walk models with anomalous trapping and systematically derive generic non-Markovian and nonlinear governing equations for the mean concentrations of the subdiffusive cells or organisms. We uncover an interesting interaction between the nonlinearities and the non-Markovian nature of the transport. In the subdiffusive case, this interaction manifests itself in a nontrivial combination of nonlinear terms with fractional derivatives. In the long time limit, however, these equations simplify to a form without fractional operators. This provides an easy method for the study of aggregation phenomena. In particular, this enables us to show that volume filling can prevent "anomalous aggregation," which occurs in subdiffusive systems with a spatially varying anomalous exponent.

  7. Charged Particle Transport in High-Energy-Density Matter

    NASA Astrophysics Data System (ADS)

    Stanton, Liam; Murillo, Michael

    2016-10-01

    Transport coefficients for dense plasmas have been numerically computed using an effective Boltzmann approach. We have developed a simplified effective potential approach that yields accurate fits for all of the relevant cross sections and collision integrals. Our results have been validated with molecular dynamics simulations for self-diffusion, interdiffusion, viscosity, thermal conductivity and stopping power. Molecular dynamics has also been used to examine the underlying assumptions of the Boltzmann approach through a categorization of behaviors of the velocity autocorrelation function in the Yukawa phase diagram. Using a velocity-dependent screening model, we examine the role of dynamical screening in transport as well. Implications of these results for Coulomb logarithm approaches are discussed. This work is performed under the auspices of the U. S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  8. Development of a particle injection system for impurity transport study in KSTAR.

    PubMed

    Lee, H Y; Hong, Suk-Ho; Hong, Joohwan; Lee, Seung Hun; Jang, Siwon; Jang, Juhyeok; Jeon, Taemin; Park, Jae Sun; Choe, Wonho

    2014-11-01

    A solid particle injection system is developed for KSTAR. The system has a compact size, compatibility with a strong magnetic field and high vacuum environment, and the capability to inject a small amount of solid particles with a narrow injection angle. The target flight-distance of 10 cm has been achieved with a particle loss rate of less than 10%. Solid impurity particles such as tungsten and carbon will be injected by this system at the midplane in KSTAR. The impurity transport feature will be studied with a soft X-ray array, a vacuum ultra-violet diagnostic, and Stand Alone Non-Corona code.

  9. Development of a particle injection system for impurity transport study in KSTAR

    SciTech Connect

    Lee, H. Y.; Hong, Joohwan; Lee, Seung Hun; Jang, Siwon; Jang, Juhyeok; Jeon, Taemin; Park, Jae Sun; Choe, Wonho; Hong, Suk-Ho

    2014-11-15

    A solid particle injection system is developed for KSTAR. The system has a compact size, compatibility with a strong magnetic field and high vacuum environment, and the capability to inject a small amount of solid particles with a narrow injection angle. The target flight-distance of 10 cm has been achieved with a particle loss rate of less than 10%. Solid impurity particles such as tungsten and carbon will be injected by this system at the midplane in KSTAR. The impurity transport feature will be studied with a soft X-ray array, a vacuum ultra-violet diagnostic, and Stand Alone Non-Corona code.

  10. Atmospheric fate and transport of fine volcanic ash: Does particle shape matter?

    NASA Astrophysics Data System (ADS)

    White, C. M.; Allard, M. P.; Klewicki, J.; Proussevitch, A. A.; Mulukutla, G.; Genareau, K.; Sahagian, D. L.

    2013-12-01

    Volcanic ash presents hazards to infrastructure, agriculture, and human and animal health. In particular, given the economic importance of intercontinental aviation, understanding how long ash is suspended in the atmosphere, and how far it is transported has taken on greater importance. Airborne ash abrades the exteriors of aircraft, enters modern jet engines and melts while coating interior engine parts causing damage and potential failure. The time fine ash stays in the atmosphere depends on its terminal velocity. Existing models of ash terminal velocities are based on smooth, quasi-spherical particles characterized by Stokes velocity. Ash particles, however, violate the various assumptions upon which Stokes flow and associated models are based. Ash particles are non-spherical and can have complex surface and internal structure. This suggests that particle shape may be one reason that models fail to accurately predict removal rates of fine particles from volcanic ash clouds. The present research seeks to better parameterize predictive models for ash particle terminal velocities, diffusivity, and dispersion in the atmospheric boundary layer. The fundamental hypothesis being tested is that particle shape irreducibly impacts the fate and transport properties of fine volcanic ash. Pilot studies, incorporating modeling and experiments, are being conducted to test this hypothesis. Specifically, a statistical model has been developed that can account for actual volcanic ash size distributions, complex ash particle geometry, and geometry variability. Experimental results are used to systematically validate and improve the model. The experiments are being conducted at the Flow Physics Facility (FPF) at UNH. Terminal velocities and dispersion properties of fine ash are characterized using still air drop experiments in an unconstrained open space using a homogenized mix of source particles. Dispersion and sedimentation dynamics are quantified using particle image

  11. Characteristics of turbulence transport for momentum and heat in particle-laden turbulent vertical channel flows

    NASA Astrophysics Data System (ADS)

    Liu, Caixi; Tang, Shuai; Shen, Lian; Dong, Yuhong

    2017-03-01

    The dynamic and thermal performance of particle-laden turbulent flow is investigated via direction numerical simulation combined with the Lagrangian point-particle tracking under the condition of two-way coupling, with a focus on the contributions of particle feedback effect to momentum and heat transfer of turbulence. We take into account the effects of particles on flow drag and Nusselt number and explore the possibility of drag reduction in conjunction with heat transfer enhancement in particle-laden turbulent flows. The effects of particles on momentum and heat transfer are analyzed, and the possibility of drag reduction in conjunction with heat transfer enhancement for the prototypical case of particle-laden turbulent channel flows is addressed. We present results of turbulence modification and heat transfer in turbulent particle-laden channel flow, which shows the heat transfer reduction when large inertial particles with low specific heat capacity are added to the flow. However, we also found an enhancement of the heat transfer and a small reduction of the flow drag when particles with high specific heat capacity are involved. The present results show that particles, which are active agents, interact not only with the velocity field, but also the temperature field and can cause a dissimilarity in momentum and heat transport. This demonstrates that the possibility to increase heat transfer and suppress friction drag can be achieved with addition of particles with different thermal properties.

  12. GYROKINETIC PARTICLE SIMULATION OF TURBULENT TRANSPORT IN BURNING PLASMAS

    SciTech Connect

    Horton, Claude Wendell

    2014-06-10

    The SciDAC project at the IFS advanced the state of high performance computing for turbulent structures and turbulent transport. The team project with Prof Zhihong Lin [PI] at Univ California Irvine produced new understanding of the turbulent electron transport. The simulations were performed at the Texas Advanced Computer Center TACC and the NERSC facility by Wendell Horton, Lee Leonard and the IFS Graduate Students working in that group. The research included a Validation of the electron turbulent transport code using the data from a steady state university experiment at the University of Columbia in which detailed probe measurements of the turbulence in steady state were used for wide range of temperature gradients to compare with the simulation data. These results were published in a joint paper with Texas graduate student Dr. Xiangrong Fu using the work in his PhD dissertation. X.R. Fu, W. Horton, Y. Xiao, Z. Lin, A.K. Sen and V. Sokolov, “Validation of electron Temperature gradient turbulence in the Columbia Linear Machine, Phys. Plasmas 19, 032303 (2012).

  13. Impact of particle nanotopology on water transport through hydrophobic soils.

    PubMed

    Truong, Vi Khanh; Owuor, Elizabeth A; Murugaraj, Pandiyan; Crawford, Russell J; Mainwaring, David E

    2015-12-15

    The impact of non- and poorly wetting soils has become increasingly important, due to its direct influence on the water-limited potential yield of rain-fed grain crops at a time of enhanced global competition for fresh water. This study investigates the physical and compositional mechanisms underlying the influence of soil organic matter (SOM) on the wetting processes of model systems. These model systems are directly related to two sandy wheat-producing soils that have contrasting hydrophobicities. Atomic force microscopy (AFM), contact angle and Raman micro-spectroscopy measurements on model planar and particulate SOM-containing surfaces demonstrated the role of the hierarchical surface structure on the wetting dynamics of packed particulate beds. It was found that a nanoscale surface topology is superimposed over the microscale roughness of the packed particles, and this controls the extent of water ingress into particulate packed beds of these particles. Using two of the dominant component organic species found in the SOM of the two soils used in this study, it was found that the specific interactions taking place between the SOM components, rather than their absolute quantities, dictated the formation of highly hydrophobic surface nanotopologies. This hydrophobicity was demonstrated, using micro-Raman imaging, to arise from the surface being in a composite Cassie-Baxter wetting state. Raman imaging demonstrated that the particle surface nanotopography influenced the degree of air entrapment in the interstices within the particle bed. The influence of a conventional surfactant on the wetting kinetics of both the model planar surfaces and packed particulate beds was quantified in terms of their respective advancing contact angles and the capillary wetting force vector. The information obtained for all of the planar and particulate surfaces, together with that obtained for the two soils, allowed linear relationships to be obtained in plots of the contact angle

  14. Analysis of non-spherical particle transport in complex internal shear flows

    NASA Astrophysics Data System (ADS)

    Feng, Y.; Kleinstreuer, C.

    2013-09-01

    Focusing on ellipsoidal particles of different aspect ratios, the motion characteristics, including critical angle and stable vs. unstable rotational periods, are computationally analyzed in developing and fully developed tubular flows. As an application of particle transport and deposition, the one-way coupled Euler-Lagrange method enhanced by Euler's rotation equations is then employed to simulate laminar-turbulent flow in a subject-specific lung-airway model. First, to gain some basic insight into the dynamics of non-spherical particles, tubular flow is considered where the trajectories of ellipsoidal fibers with randomly initialized incidence angles were released at different inlet-plane positions, computed and visualized. Local and overall particle deposition results are compared between spheres, ellipsoidal fibers, and sphere-equivalent particles for which a revised Stokes diameter was developed. Concerning non-spherical particle transport and deposition in a subject-specific respiratory system, the validated computer simulation model provides realistic and accurate particle-deposition results. Specifically, slender non-spherical particles (i.e., those with higher aspect ratios) are potentially more harmful than thicker ones due to their ability to penetrate into deeper lung regions when somewhat aligned with the major flow field. Furthermore, non-spherical particle deposition is enhanced as the breathing rate increases.

  15. Understanding Particle Defect Transport in an Ultra-Clean Sputter Coating Process

    SciTech Connect

    Walton, C; Kearney, P; Folta, J; Sweeney, D; Mirkarimi, P

    2003-03-24

    Low-defect mask blanks remain a key technical challenge to Extreme Ultraviolet Lithography (EUVL). The mask blank is ion-beam sputter-coated with an 81-layer Mo/Si multilayer stack for high reflectance at {lambda} = 13.4nm. The current mask coating process can achieve a median added defect level of 0.05 defects/cm{sup 2} (12 added defects 90nm or larger on a 200mm Si-wafer test substrate), but this must be reduced by about a factor of 10 to meet mask cost requirements for EUVL. To further reduce the particle defect level, we have studied pathways for particle transport, using test particles and particles native to the coating process, and combined the results into a computational model of particle transport in an ion-beam sputter system. At process pressure, gas drag is negligible for particles above 100nm, so particles travel ballistically until they hit a surface. Bounce from chamber walls allows particles to reach all surfaces in the chamber if they have initial velocities above {approx}100m/s. The ion beam has sufficient momentum to entrain slower particles and accelerate them toward the sputter target, where some can bounce to the substrate. The model shows preliminary agreement with experimental defect distributions on witness wafers at various positions within the coating chamber.

  16. The role of unsteady forces for sediment particles in bedload transport

    NASA Astrophysics Data System (ADS)

    Liu, Detian; Liu, Xiaofeng; Fu, Xudong

    2016-04-01

    In engineering, bedload transport is usually predicted by a variety of formulas, and huge uncertainty is found from case to case. One of the fundamental reasons is the lack of fully understanding the dynamic behavior of bedload particles. We explore the dynamic characteristics of sediment particles transported in turbulent open-channel flows. A numerical model of sediment transport is built by combining the large eddy simulation (LES) with discrete element model (DEM) using a fully four-way coupling method. Particular attention is paid to the hydrodynamic forces acting on bedload particles. The result shows that, in addition to drag force, the unsteady forces (i.e. Basset history force and added mass force) are important (40%~60% in the summation of all the time-averaged magnitude of forces) for fine sediment particles (with a diameter of 0.5 mm), which are usually ignored for computational complexity. While the lift force has been found to be significant for gravel particles (with a diameter of 31 mm)[1], it is not relatively dominant for such fine particles (less than 3% in the summation). This helps explaining why the prediction of the same formula change greatly from case to case. The comparison with experimental data also shows great potential of the current LES-DEM model for fundamental research in bedload transport. Reference: [1] Nino, Y., & Garcia, M. (1994). Gravel saltation 2. Modeling. Water Resources Research, 30(6), 1915-1924.

  17. Transport coefficients for relativistic gas mixtures of hard-sphere particles

    NASA Astrophysics Data System (ADS)

    Kremer, Gilberto M.; Moratto, Valdemar

    2017-04-01

    In the present work, we calculate the transport coefficients for a relativistic binary mixture of diluted gases of hard-sphere particles. The gas mixture under consideration is studied within the relativistic Boltzmann equation in the presence of a gravitational field described by the isotropic Schwarzschild metric. We obtain the linear constitutive equations for the thermodynamic fluxes. The driving forces for the fluxes of particles and heat will appear with terms proportional to the gradient of gravitational potential. We discuss the consequences of the gravitational dependence on the driving forces. We obtain general integral expressions for the transport coefficients and evaluate them by assuming a hard-sphere interaction amongst the particles when they collide and not very disparate masses and diameters of the particles of each species. The obtained results are expressed in terms of their temperature dependence through the relativistic parameter which gives the ratio of the rest energy of the particles and the thermal energy of the gas mixture. Plots are given to analyze the behavior of the transport coefficients with respect to the temperature when small variations in masses and diameters of the particles of the species are present. We also analyze for each coefficient the corresponding limits to a single gas so the non-relativistic and ultra-relativistic limiting cases are recovered as well. Furthermore, we show that the transport coefficients have a dependence on the gravitational field.

  18. Angular momentum transport and particle acceleration during magnetorotational instability in a kinetic accretion disk.

    PubMed

    Hoshino, Masahiro

    2015-02-13

    Angular momentum transport and particle acceleration during the magnetorotational instability (MRI) in a collisionless accretion disk are investigated using three-dimensional particle-in-cell simulation. We show that the kinetic MRI can provide not only high-energy particle acceleration but also enhancement of angular momentum transport. We find that the plasma pressure anisotropy inside the channel flow with p(∥)>p(⊥) induced by active magnetic reconnection suppresses the onset of subsequent reconnection, which, in turn, leads to high-magnetic-field saturation and enhancement of the Maxwell stress tensor of angular momentum transport. Meanwhile, during the quiescent stage of reconnection, the plasma isotropization progresses in the channel flow and the anisotropic plasma with p(⊥)>p(∥) due to the dynamo action of MRI outside the channel flow contribute to rapid reconnection and strong particle acceleration. This efficient particle acceleration and enhanced angular momentum transport in a collisionless accretion disk may explain the origin of high-energy particles observed around massive black holes.

  19. Monte Carlo simulations of the particle transport in semiconductor detectors of fast neutrons

    NASA Astrophysics Data System (ADS)

    Sedlačková, Katarína; Zaťko, Bohumír; Šagátová, Andrea; Nečas, Vladimír

    2013-05-01

    Several Monte Carlo all-particle transport codes are under active development around the world. In this paper we focused on the capabilities of the MCNPX code (Monte Carlo N-Particle eXtended) to follow the particle transport in semiconductor detector of fast neutrons. Semiconductor detector based on semi-insulating GaAs was the object of our investigation. As converter material capable to produce charged particles from the (n, p) interaction, a high-density polyethylene (HDPE) was employed. As the source of fast neutrons, the 239Pu-Be neutron source was used in the model. The simulations were performed using the MCNPX code which makes possible to track not only neutrons but also recoiled protons at all interesting energies. Hence, the MCNPX code enables seamless particle transport and no other computer program is needed to process the particle transport. The determination of the optimal thickness of the conversion layer and the minimum thickness of the active region of semiconductor detector as well as the energy spectra simulation were the principal goals of the computer modeling. Theoretical detector responses showed that the best detection efficiency can be achieved for 500 μm thick HDPE converter layer. The minimum detector active region thickness has been estimated to be about 400 μm.

  20. A Pipeline Transport Correlation for Slurries with Small but Dense Particles

    SciTech Connect

    Poloski, Adam P; Etchells, Arthur W; Chun, Jaehun; Adkins, Harold E; Casella, Andrew M; Minette, Michael J; Yokuda, Satoru T

    2010-04-01

    Most correlations/models for minimum transport or critical velocity of slurry were developed for slurries composed of particles greater than ~100-200 µm diameter with narrow particle-size distributions which is typical of the minerals industry. Many other process industries handle smaller particles. In particular waste slurries at the U.S. Department of Energy's Hanford Site have broad size distributions and significant fractions of smaller particles. Despite the size of these wastes, recent PNNL studies indicate that the small particles might be of sufficient density to pose a significant risk for pipeline deposition and plugging. To allow predictive assessment of deposition of fine dense particles for waste slurry transport at the U.S. DOE Hanford site, a pipeline-transport correlation for critical velocity was developed using a simple power-law between two dimensionless numbers important for slurry transport, the deposition Froude and Archimedes numbers. The correlation accords well with experimental data for slurries with Archimedes numbers <80 and is an adequate pipeline design guide for processing Hanford waste slurry.

  1. Angular Momentum Transport and Particle Acceleration During Magnetorotational Instability in a Kinetic Accretion Disk

    NASA Astrophysics Data System (ADS)

    Hoshino, Masahiro

    2015-02-01

    Angular momentum transport and particle acceleration during the magnetorotational instability (MRI) in a collisionless accretion disk are investigated using three-dimensional particle-in-cell simulation. We show that the kinetic MRI can provide not only high-energy particle acceleration but also enhancement of angular momentum transport. We find that the plasma pressure anisotropy inside the channel flow with p∥>p⊥ induced by active magnetic reconnection suppresses the onset of subsequent reconnection, which, in turn, leads to high-magnetic-field saturation and enhancement of the Maxwell stress tensor of angular momentum transport. Meanwhile, during the quiescent stage of reconnection, the plasma isotropization progresses in the channel flow and the anisotropic plasma with p⊥>p∥ due to the dynamo action of MRI outside the channel flow contribute to rapid reconnection and strong particle acceleration. This efficient particle acceleration and enhanced angular momentum transport in a collisionless accretion disk may explain the origin of high-energy particles observed around massive black holes.

  2. Modeling nitrogen transport and transformation in aquifers using a particle-tracking approach

    NASA Astrophysics Data System (ADS)

    Cui, Zhengtao; Welty, Claire; Maxwell, Reed M.

    2014-09-01

    We have integrated multispecies biodegradation and geochemical reactions into an existing particle-tracking code to simulate reactive transport in three-dimensional variably saturated media, with a focus on nitrification and denitrification processes. This new numerical model includes reactive air-phase transport so that gases such as N2 and CO2 can be tracked. Although nitrogen biodegradation is the primary problem addressed here, the method presented is also applicable to other reactive multispecies transport problems. We verified the model by comparison with (1) analytical solutions for saturated one- and two-dimensional cases; (2) a finite element model for a one-dimensional unsaturated case; and (3) laboratory observations for a one-dimensional saturated case. Good agreement between the new code and the verification problems is demonstrated. The new model can simulate nitrogen transport and transformation in a heterogeneous permeability field where sharp concentration gradients are present. An example application to nitrogen species biodegradation and transport of a plume emanating from a leaking sewer in a heterogeneous, variably saturated aquifer is presented to illustrate this capability. This example is a novel application of coupling unsaturated/saturated zone transport with nitrogen species biodegradation. The code has the computational advantages of particle-tracking algorithms, including local and global mass conservation and minimal numerical dispersion. We also present new methods for improving particle code efficiency by implementing the concept of tracking surplus/deficit particles and particle recycling in order to control the growth of particle numbers. The new model retains the advantages of the particle tracking approach such as allowing relatively low spatial and temporal resolutions to be used, while incorporating the robustness of grid-based Monod kinetics to simulate biogeochemical reactions.

  3. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas

    SciTech Connect

    Diamond, P.H.; Lin, Z.; Wang, W.; Horton, W.; Klasky, S.; Decyk, V.; Ma, K.-L.; Chames, J.; Adams, M.

    2011-09-21

    The three-year project GPS-TTBP resulted in over 152 publications and 135 presentations. This summary focuses on the scientific progress made by the project team. A major focus of the project was on the physics intrinsic rotation in tokamaks. Progress included the first ever flux driven study of net intrinsic spin-up, mediated by boundary effects (in collaboration with CPES), detailed studies of the microphysics origins of the Rice scaling, comparative studies of symmetry breaking mechanisms, a pioneering study of intrinsic torque driven by trapped electron modes, and studies of intrinsic rotation generation as a thermodynamic engine. Validation studies were performed with C-Mod, DIII-D and CSDX. This work resulted in very successful completion of the FY2010 Theory Milestone Activity for OFES, and several prominent papers of the 2008 and 2010 IAEA Conferences. A second major focus was on the relation between zonal flow formation and transport non-locality. This culminated in the discovery of the ExB staircase - a conceptually new phenomenon. This also makes useful interdisciplinary contact with the physics of the PV staircase, well-known in oceans and atmospheres. A third topic where progress was made was in the simulation and theory of turbulence spreading. This work, now well cited, is important for understanding the dynamics of non-locality in turbulent transport. Progress was made in studies of conjectured non-diffusive transport in trapped electron turbulence. Pioneering studies of ITB formation, coupling to intrinsic rotation and hysteresis were completed. These results may be especially significant for future ITER operation. All told, the physics per dollar performance of this project was quite good. The intense focus was beneficial and SciDAC resources were essential to its success.

  4. Solar Energetic Particle Transport Near a Heliospheric Current Sheet

    NASA Astrophysics Data System (ADS)

    Battarbee, Markus; Dalla, Silvia; Marsh, Mike S.

    2017-02-01

    Solar energetic particles (SEPs), a major component of space weather, propagate through the interplanetary medium strongly guided by the interplanetary magnetic field (IMF). In this work, we analyze the implications that a flat Heliospheric Current Sheet (HCS) has on proton propagation from SEP release sites to the Earth. We simulate proton propagation by integrating fully 3D trajectories near an analytically defined flat current sheet, collecting comprehensive statistics into histograms, fluence maps, and virtual observer time profiles within an energy range of 1-800 MeV. We show that protons experience significant current sheet drift to distant longitudes, causing time profiles to exhibit multiple components, which are a potential source of confusing interpretations of observations. We find that variation of the current sheet thickness within a realistic parameter range has little effect on particle propagation. We show that the IMF configuration strongly affects the deceleration of protons. We show that in our model, the presence of a flat equatorial HCS in the inner heliosphere limits the crossing of protons into the opposite hemisphere.

  5. Hydrodynamic controls on particle transport through heterogeneous porous media

    SciTech Connect

    Silliman, S.E.

    1992-09-30

    The initial stages of this project have been focused on equipment development and preliminary experimental efforts. Among the accomplishments to date are the development of a successful flow cell design, proof of the utility of the UV resin, adjustment of the Laser Particle Counter to produce reliable readings, installation of a low particle content water supply, installation of a microscope for viewing discharge samples, development of a fiber/rod optic system for freezing the UV resin in situ and performance of initial experiments on layered and complex heterogeneities. The work is currently following very closely the original schedule for research efforts. Continuing efforts in year one will include continued efforts in simple and complex heterogeneity in two-dimensions, extension into three-dimensions, consideration of the most appropriate methods for creating geologically realistic structures in the laboratory, interaction with other SSP research programs and organization of the spring meeting on intermediate-scale experimentation to be held at Notre Dame. Efforts in year two will be focused on three-dimensional experiments in saturated media, extension of results into unsaturated media, development of techniques for unsaturated media characterization, and development of research ties with outside research interests.

  6. Time-Dependent, Parallel Neutral Particle Transport Code System.

    SciTech Connect

    BAKER, RANDAL S.

    2009-09-10

    Version 00 PARTISN (PARallel, TIme-Dependent SN) is the evolutionary successor to CCC-547/DANTSYS. The PARTISN code package is a modular computer program package designed to solve the time-independent or dependent multigroup discrete ordinates form of the Boltzmann transport equation in several different geometries. The modular construction of the package separates the input processing, the transport equation solving, and the post processing (or edit) functions into distinct code modules: the Input Module, the Solver Module, and the Edit Module, respectively. PARTISN is the evolutionary successor to the DANTSYSTM code system package. The Input and Edit Modules in PARTISN are very similar to those in DANTSYS. However, unlike DANTSYS, the Solver Module in PARTISN contains one, two, and three-dimensional solvers in a single module. In addition to the diamond-differencing method, the Solver Module also has Adaptive Weighted Diamond-Differencing (AWDD), Linear Discontinuous (LD), and Exponential Discontinuous (ED) spatial differencing methods. The spatial mesh may consist of either a standard orthogonal mesh or a block adaptive orthogonal mesh. The Solver Module may be run in parallel for two and three dimensional problems. One can now run 1-D problems in parallel using Energy Domain Decomposition (triggered by Block 5 input keyword npeg>0). EDD can also be used in 2-D/3-D with or without our standard Spatial Domain Decomposition. Both the static (fixed source or eigenvalue) and time-dependent forms of the transport equation are solved in forward or adjoint mode. In addition, PARTISN now has a probabilistic mode for Probability of Initiation (static) and Probability of Survival (dynamic) calculations. Vacuum, reflective, periodic, white, or inhomogeneous boundary conditions are solved. General anisotropic scattering and inhomogeneous sources are permitted. PARTISN solves the transport equation on orthogonal (single level or block-structured AMR) grids in 1-D (slab, two

  7. Hydrodynamic controls on particle transport through heterogeneous porous media. Technical progress report

    SciTech Connect

    Silliman, S.E.; Babic, M.

    1993-09-28

    Sophisticated models of the movement of particles, particularly bacteria and viruses, through porous media have been developed, but have met with limited success when compared to field observations some argue that the poor predictive capabilities of the models are due in part to the fact that most of the sophisticated models are tied to an assumptions of homogeneity within the flow field. In previous work, the structure of random percolation fields has been investigated and suggests application of percolation theory to heterogeneous porous media. One conclusion from this study as applied to particle transport is that as the distribution of pore throat sizes takes on variation in the third dimension, the probability of finding a continuous flow path with large throat size increases. One interpretation of this work, within the current context, leads to an argument that a saturated medium will become more open to transport of particles as the medium takes on three dimensional structure. The central hypothesis of the current project is therefore be stated: Particles which are suspended within the pore fluids of media demonstrating three-dimensional heterogeneities will be transported at higher average velocities and with less trapping than particles which are suspended in the pore fluids of media demonstrating one- or two-dimensional heterogeneities. This dependence on dimension is a function of the dimensional character of the heterogeneity, the length scales of the heterogeneity, the size of the particles, the hydrodynamics of the flow field, the degree of saturation of the medium, and the medium/particle interaction.

  8. Modeling and Simulation of Cardiogenic Embolic Particle Transport to the Brain

    NASA Astrophysics Data System (ADS)

    Mukherjee, Debanjan; Jani, Neel; Shadden, Shawn C.

    2015-11-01

    Emboli are aggregates of cells, proteins, or fatty material, which travel along arteries distal to the point of their origin, and can potentially block blood flow to the brain, causing stroke. This is a prominent mechanism of stroke, accounting for about a third of all cases, with the heart being a prominent source of these emboli. This work presents our investigations towards developing numerical simulation frameworks for modeling the transport of embolic particles originating from the heart along the major arteries supplying the brain. The simulations are based on combining discrete particle method with image based computational fluid dynamics. Simulations of unsteady, pulsatile hemodynamics, and embolic particle transport within patient-specific geometries, with physiological boundary conditions, are presented. The analysis is focused on elucidating the distribution of particles, transport of particles in the head across the major cerebral arteries connected at the Circle of Willis, the role of hemodynamic variables on the particle trajectories, and the effect of considering one-way vs. two-way coupling methods for the particle-fluid momentum exchange. These investigations are aimed at advancing our understanding of embolic stroke using computational fluid dynamics techniques. This research was supported by the American Heart Association grant titled ``Embolic Stroke: Anatomic and Physiologic Insights from Image-Based CFD.''

  9. Plutonium isotopes in settling particles: transport and scavenging of Pu in the western Northwest Pacific.

    PubMed

    Zheng, Jian; Yamada, Masatoshi

    2006-07-01

    We examined the vertical distributions of 239+240Pu activity and 240Pu/239Pu atom ratio in settling particles and quantified the particulate 239+240Pu fluxes in the water column in the western Northwest Pacific. Settling particle samples were collected using sediment traps. Plutonium isotopes were analyzed using a sector field high-resolution ICP-MS. To the best of our knowledge, this is the first time that both Pu activity and Pu isotope ratio data have been obtained for settling particles in the Pacific Ocean. The high (>0.18) 240Pu/239Pu atom ratios in settling particles indicate that plutonium from the Pacific Proving Grounds (PPG) source in the central Pacific is transported toward the western Northwest Pacific. Evidence indicates that Pu scavenging onto the settling particles is strongly dependent upon the bulk mass flux. The results suggest that advective lateral transport of dissolved Pu from the open ocean to the ocean margin and removal of Pu into the margin sediments by particle scavenging is a common phenomenon in the Pacific Ocean. Plutonium can be considered as a useful tracer to study the transport and fate of other contaminants that readily adsorb to particles in marine environments.

  10. Commuter exposure to inhalable, thoracic and alveolic particles in various transportation modes in Delhi.

    PubMed

    Kumar, Pramod; Gupta, N C

    2016-01-15

    A public health concern is to understand the linkages between specific pollution sources and adverse health impacts. Commuting can be viewed as one of the significant-exposure activity in high-vehicle density areas. This paper investigates the commuter exposure to inhalable, thoracic and alveolic particles in various transportation modes in Delhi, India. Air pollution levels are significantly contributed by automobile exhaust and also in-vehicle exposure can be higher sometime than ambient levels. Motorcycle, auto rickshaw, car and bus were selected to study particles concentration along two routes in Delhi between Kashmere Gate and Dwarka. The bus and auto rickshaw were running on compressed natural gas (CNG) while the car and motorcycle were operated on gasoline fuel. Aerosol spectrometer was employed to measure inhalable, thoracic and alveolic particles during morning and evening rush hours for five weekdays. From the study, we observed that the concentration levels of these particles were greatly influenced by transportation modes. Concentrations of inhalable particles were found higher during morning in auto rickshaw (332.81 ± 90.97 μg/m(3)) while the commuter of bus exhibited higher exposure of thoracic particles (292.23 ± 110.45 μg/m(3)) and car commuters were exposed to maximum concentrations of alveolic particles (222.37 ± 26.56 μg/m(3)). We observed that in evening car commuters experienced maximum concentrations of all sizes of particles among the four commuting modes. Interestingly, motorcycle commuters were exposed to lower levels of inhalable and thoracic particles during morning and evening hours as compared to other modes of transport. The mean values were found greater than the median values for all the modes of transport suggesting that positive skewed distributions are characteristics of naturally occurring phenomenon.

  11. Porous media grain size distribution and hydrodynamic forces effects on transport and deposition of suspended particles.

    PubMed

    Ahfir, Nasre-Dine; Hammadi, Ahmed; Alem, Abdellah; Wang, HuaQing; Le Bras, Gilbert; Ouahbi, Tariq

    2017-03-01

    The effects of porous media grain size distribution on the transport and deposition of polydisperse suspended particles under different flow velocities were investigated. Selected Kaolinite particles (2-30μm) and Fluorescein (dissolved tracer) were injected in the porous media by step input injection technique. Three sands filled columns were used: Fine sand, Coarse sand, and a third sand (Mixture) obtained by mixing the two last sands in equal weight proportion. The porous media performance on the particle removal was evaluated by analysing particles breakthrough curves, hydro-dispersive parameters determined using the analytical solution of convection-dispersion equation with a first order deposition kinetics, particles deposition profiles, and particle-size distribution of the recovered and the deposited particles. The deposition kinetics and the longitudinal hydrodynamic dispersion coefficients are controlled by the porous media grain size distribution. Mixture sand is more dispersive than Fine and Coarse sands. More the uniformity coefficient of the porous medium is large, higher is the filtration efficiency. At low velocities, porous media capture all sizes of suspended particles injected with larger ones mainly captured at the entrance. A high flow velocity carries the particles deeper into the porous media, producing more gradual changes in the deposition profile. The median diameter of the deposited particles at different depth increases with flow velocity. The large grain size distribution leads to build narrow pores enhancing the deposition of the particles by straining. Copyright © 2016. Published by Elsevier B.V.

  12. Particle trapping and beam transport issues in laser driven accelerators

    NASA Astrophysics Data System (ADS)

    Gwenael, Fubiani; Wim, Leemans; Eric, Esarey

    2000-10-01

    The LWFA and colliding pulses [1][2] sheme are capable of producing very compact electron bunches where the longitudinal size is much smaller than the transverse size. In this case, even if the electrons are relativistic, space charge force can affect the longitudinal and transverse bunch properties [3][4]. In the Self-modulated regime and the colliding pulse sheme, electrons are trapped from the background plasma and rapidly accelerated. We present theoretical studies of the generation and transport of electron bunches in LWFAs. The space charge effect induced in the bunch is modelled assuming the bunch is ellipsoid like. Beam transport in vacuum, comparison between gaussian and waterbag distribution, comparison between envelope model and PIC simulation will be discussed. This work is supported by the Director, Office of Science, Office of High Energy & Nuclear Physics, High Energy Physics Division, of the U.S Department of Energy, under Contract No. DE-AC03-76SF00098 [1]E.Esarey et al.,IEEE Trans. Plasma Sci. PS-24,252 (1996); W.P. Leemans et al, ibidem, 331. [2]D. Umstadter et al., Phys. Rev. Lett. 76, 2073 (1996); E.Esarey et al., Phys. Rev. Lett. 79, 2682 (1997); C.B Schroeder et al., Phys. Rev. E59, 6037 (1999) [3]DESY M87-161 (1987); DESY M88-013 (1988) [4] R.W. Garnett and T.P Wangler, IEEE Part. Acce. Conf. (1991)

  13. Colloidal particle transport in unsaturated porous media: Influence of flow velocity and ionic strength on colloidal particle retention

    NASA Astrophysics Data System (ADS)

    Predelus, Dieuseul; Coutinho, Paiva Artur; Lassabatere, Laurent; Winiarsky, Thierry; Angulo Jaramillo, Rafael

    2014-05-01

    Recently, anthropogenic colloidal particles are increasingly present into the environment. They can carry contaminants or constitute themselves a risk for the environment. Several factors can influence the fate of colloidal particles in soils. This work presents the investigation of effects of flow velocity and ionic strength on colloidal particles retention in unsaturated porous media. Experiments were carried out in laboratory column (D = 10 cm, L = 30 cm) with compacted mixture sand-gravel from a fluvioglacial basin of Lyon, France. Fluorescents nanoparticles (D = 50 to 60 nm) of silica doped with fluorescent organic molecules (fluorescein) have been used to simulate colloid particle transport. A solution of a non-reactive tracer, Br-, was used to determine the water flow behavior. Three different unsaturated water flow velocities (i.e. V = 0.025, 0.064 and 0.127 cm/min) and five ionic strengths (i.e. IS = 1, 5, 50, 100 and 200 mM at pH=8.5) have been tested for the case of a pulse injection of a colloidal particle solution at a concentration of 2 mg/L. Breakthrough curves are modeled by the non-equilibrium transfer model MIM (mobile and immobile water fraction), taking into account a sink term to reflect the colloidal particles adsorption. Results show that, when the flow velocity increases, the colloidal particle retention decreases. The decrease in flow velocity allows a better homogenization of the flow. In addition, colloidal entrapment is favored by the fact that their pore velocity is reduced. The retention of colloidal particle is function of ionic strength as well. Indeed, when the ionic strength increases, the retention increases. However for ionic strength higher than 50 mM, the retention decreases suggesting that there is a threshold value for the ionic strength with respect to the retention of colloidal particles. The retention profiles at the end of experiments indicate that the colloidal particles are retained at the inlet of the columns

  14. Comprehensive computer model for magnetron sputtering. II. Charged particle transport

    SciTech Connect

    Jimenez, Francisco J. Dew, Steven K.; Field, David J.

    2014-11-01

    Discharges for magnetron sputter thin film deposition systems involve complex plasmas that are sensitively dependent on magnetic field configuration and strength, working gas species and pressure, chamber geometry, and discharge power. The authors present a numerical formulation for the general solution of these plasmas as a component of a comprehensive simulation capability for planar magnetron sputtering. This is an extensible, fully three-dimensional model supporting realistic magnetic fields and is self-consistently solvable on a desktop computer. The plasma model features a hybrid approach involving a Monte Carlo treatment of energetic electrons and ions, along with a coupled fluid model for thermalized particles. Validation against a well-known one-dimensional system is presented. Various strategies for improving numerical stability are investigated as is the sensitivity of the solution to various model and process parameters. In particular, the effect of magnetic field, argon gas pressure, and discharge power are studied.

  15. Applications to particle transport in the Earth`s aurora

    SciTech Connect

    Jasperse, J.R.

    1994-12-31

    The visual display of light called the aurora borealis occurs when energetic (1 to 100-keV) electrons, protons, and hydrogen atoms from the Earth`s magnetosphere enter the Earth`s upper atmosphere and collide with the ambient neutral particles. Two kinds of auroras occur in nature: those excited by incident electrons and those excited by incident protons and hydrogen atoms. In this paper, we consider only the latter. The proton-hydrogen aurora may be divided into two altitude regions: high altitudes ({approximately}250 to {approximately}600 km) where charge-changing collisions dominate and energy-loss collisions may be neglected and low altitudes ({approximately}100 to {approximately}250 km) where energy-loss collisions also become important and cause rapid energy degradation. The focus of this review is on the high-altitude region where the one-group approximation is valid.

  16. The RABL5 homolog IFT22 regulates the cellular pool size and the amount of IFT particles partitioned to the flagellar compartment in Chlamydomonas reinhardtii.

    PubMed

    Silva, David A; Huang, Xiaomeng; Behal, Robert H; Cole, Douglas G; Qin, Hongmin

    2012-01-01

    Cilia and flagella, sensory and motile structures protruding from the cell body, rely on the continuous bidirectional traffic of intraflagellar transport (IFT) particles to ferry flagellar precursors into flagella for assembly. Cells synthesize a large pool of IFT particle proteins in the cell body, but only a small portion engages in active transport within the flagella at any given time. The atypical small G protein Rab-like 5 (RABL5) has been shown to move in an IFT-like manner in the flagella, but its function in ciliogenesis is controversial. In this report, we demonstrate that IFT22, the Chlamydomonas reinhardtii homolog of RABL5, is a bona fide IFT particle complex B subunit. Although the amount of IFT22 remains unaffected by depletion of either complex A or B, depletion of IFT22 leads to a smaller pool of both complex A and B. Strikingly, the smaller cellular pool of IFT particles does not lead to a reduced distribution of IFT particles to flagella. Instead, the amount of IFT particle proteins, including IFT22 itself, increase in the flagella. Moreover, cells over-expressing IFT22 also accumulate IFT particles in their flagella. Taken together, these data indicate that, in C. reinhardtii, IFT22 controls the cellular levels of both complex A and B, thus plays a critical role in determining the cellular availability of IFT particles. In addition, although IFT22 may not directly carry any precursors for flagellar assembly, it controls how many IFT particles participate in ferrying precursors into flagella.

  17. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, W.P.; Hartmann-Siantar, C.L.; Rathkopf, J.A.

    1999-02-09

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media. 57 figs.

  18. Calculation of radiation therapy dose using all particle Monte Carlo transport

    DOEpatents

    Chandler, William P.; Hartmann-Siantar, Christine L.; Rathkopf, James A.

    1999-01-01

    The actual radiation dose absorbed in the body is calculated using three-dimensional Monte Carlo transport. Neutrons, protons, deuterons, tritons, helium-3, alpha particles, photons, electrons, and positrons are transported in a completely coupled manner, using this Monte Carlo All-Particle Method (MCAPM). The major elements of the invention include: computer hardware, user description of the patient, description of the radiation source, physical databases, Monte Carlo transport, and output of dose distributions. This facilitated the estimation of dose distributions on a Cartesian grid for neutrons, photons, electrons, positrons, and heavy charged-particles incident on any biological target, with resolutions ranging from microns to centimeters. Calculations can be extended to estimate dose distributions on general-geometry (non-Cartesian) grids for biological and/or non-biological media.

  19. CHARGED-PARTICLE TRANSPORT IN MAGNETIC TURBULENCE. I. A GLOBALLY ANISOTROPIC FIELD

    SciTech Connect

    Sun, P.; Jokipii, J. R.

    2015-12-10

    Collisionless magnetohydrodynamic Turbulence is common in large scale astrophysical environments. The determination of the transport of charged particles both parallel and perpendicular in such a system is of considerable interest. Quasi-linear analysis or direct numerical simulation can be used to find the effects of the turbulent magnetic field on the transport of charged particles. A number of different magnetic turbulence models have been proposed in the last several decades. We present here the results of studying particle transport in synthesized, anisotropic turbulence and compare the results with those obtained using the standard isotropic turbulence model in a series of papers. In this paper we consider the magnetic field turbulence model with global anisotropy.

  20. Non-Markovian Model for Transport and Reactions of Particles in Spiny Dendrites

    NASA Astrophysics Data System (ADS)

    Fedotov, Sergei; Méndez, Vicenç

    2008-11-01

    Motivated by the experiments [Santamaria , Neuron 52, 635 (2006)NERNET0896-627310.1016/j.neuron.2006.10.025] that indicated the possibility of subdiffusive transport of molecules along dendrites of cerebellar Purkinje cells, we develop a mesoscopic model for transport and chemical reactions of particles in spiny dendrites. The communication between spines and a parent dendrite is described by a non-Markovian random process and, as a result, the overall movement of particles can be subdiffusive. A system of integrodifferential equations is derived for the particles densities in dendrites and spines. This system involves the spine-dendrite interaction term which describes the memory effects and nonlocality in space. We consider the impact of power-law waiting time distributions on the transport of biochemical signals and mechanism of the accumulation of plasticity-inducing signals inside spines.

  1. Physical considerations relevant to HZE-particle transport in matter

    NASA Technical Reports Server (NTRS)

    Schimmerling, W.

    1988-01-01

    High-energy, highly charged (HZE) heavy nuclei may seem at first sight to be an exotic type of radiation, only remotely connected with nuclear power generation. On closer examination it becomes evident that heavy-ion accelerators are being seriously considered for driving inertial confinement fusion reactors, and high-energy heavy nuclei in the cosmic radiation are likely to place significant constraints on satellite power system deployment and space-based power generation. The use of beams of heavy nuclei in an increasing number of current applications, as well as their importance for the development of the state of the art of the future, makes it necessary to develop at the same time a good understanding of their transport through matter.

  2. Physical considerations relevant to HZE-particle transport in matter.

    PubMed

    Schimmerling, W

    1988-06-01

    High-energy, highly charged (HZE) heavy nuclei may seem at first sight to be an exotic type of radiation, only remotely connected with nuclear power generation. On closer examination it becomes evident that heavy-ion accelerators are being seriously considered for driving inertial confinement fusion reactors, and high-energy heavy nuclei in the cosmic radiation are likely to place significant constraints on satellite power system deployment and space-based power generation. The use of beams of heavy nuclei in an increasing number of current applications, as well as their importance for the development of the state of the art of the future, makes it necessary to develop at the same time a good understanding of their transport through matter.

  3. Resolving Rapid Variation in Energy for Particle Transport

    SciTech Connect

    Haut, Terry Scot; Ahrens, Cory Douglas; Jonko, Alexandra; Till, Andrew Thomas; Lowrie, Robert Byron

    2016-08-23

    Resolving the rapid variation in energy in neutron and thermal radiation transport is needed for the predictive simulation capability in high-energy density physics applications. Energy variation is difficult to resolve due to rapid variations in cross sections and opacities caused by quantized energy levels in the nuclei and electron clouds. In recent work, we have developed a new technique to simultaneously capture slow and rapid variations in the opacities and the solution using homogenization theory, which is similar to multiband (MB) and to the finite-element with discontiguous support (FEDS) method, but does not require closure information. We demonstrated the accuracy and efficiency of the method for a variety of problems. We are researching how to extend the method to problems with multiple materials and the same material but with different temperatures and densities. In this highlight, we briefly describe homogenization theory and some results.

  4. Physical considerations relevant to HZE-particle transport in matter

    NASA Technical Reports Server (NTRS)

    Schimmerling, W.

    1988-01-01

    High-energy, highly charged (HZE) heavy nuclei may seem at first sight to be an exotic type of radiation, only remotely connected with nuclear power generation. On closer examination it becomes evident that heavy-ion accelerators are being seriously considered for driving inertial confinement fusion reactors, and high-energy heavy nuclei in the cosmic radiation are likely to place significant constraints on satellite power system deployment and space-based power generation. The use of beams of heavy nuclei in an increasing number of current applications, as well as their importance for the development of the state of the art of the future, makes it necessary to develop at the same time a good understanding of their transport through matter.

  5. Alpha particle transport in the presence of ballooning type electrostatic driftwaves

    NASA Astrophysics Data System (ADS)

    Nishimura, Y.; Huang, B.; Cheng, C. Z.

    2015-07-01

    Employing Hamiltonian mechanics, the transport of fusion born alpha particles in the presence of driftwave turbulence is investigated. An analytical turbulence model based on the toroidal drift eigenmode is employed for guiding center orbit-following calculations. It is shown that high energy particles are less susceptible to driftwave turbulence. The passing particle transport is due to overlapping of guiding center electric islands whose widths are inversely proportional to the square root of the parallel velocity. For trapped particles, through a coordinate transformation from the poloidal angle and the parallel velocity to the action-angle variables, the resonance between the bounce motion and the toroidal precession motion, which can cause secondary island formation in the phase space, is demonstrated.

  6. Martian global dust storms - Zonally symmetric numerical simulations including size-dependent particle transport

    NASA Astrophysics Data System (ADS)

    Murphy, J. R.; Haberle, R. M.; Toon, O. B.; Pollack, J. B.

    1993-02-01

    A zonally symmetric primitive-equation grid-point model of the Martian atmosphere is coupled with an aerosol transport/microphysical model in order to numerically investigate the size-dependent transport of dust particles in the Martian atmosphere. The coupled model accounts for diabatic heating due to a radiatively active evolving dust field, but neglects feedbacks between atmosphere-surface interactions and surface dust lifting. The differing suspension lifetimes of dust particles of various sizes (radius = 1-80 microns), in conjunction with spatially varying atmospheric dynamics, result in latitudinal differences in several measurements of the column integrated particle concentration. This work indicates the importance of considering the full range of particle sizes (and shapes) of the suspended dust during Martian global dust storms and their impact upon the spatial extent and wavelength-dependent radiative influence of such storms.

  7. Inward particle transport at high collisionality in the Experimental Advanced Superconducting Tokamak

    SciTech Connect

    Wang, G. Q.; Ma, J.; Weiland, J.; Zang, Q.

    2013-10-15

    We have made the first drift wave study of particle transport in the Experimental Advanced Superconducting Tokamak (Wan et al., Nucl. Fusion 49, 104011 (2009)). The results reveal that collisions make the particle flux more inward in the high collisionality regime. This can be traced back to effects that are quadratic in the collision frequency. The particle pinch is due to electron trapping which is not very efficient in the high collisionality regime so the approach to equilibrium is slow. We have included also the electron temperature gradient (ETG) mode to give the right electron temperature gradient, since the Trapped Electron Mode (TE mode) is weak in this regime. However, at the ETG mode number ions are Boltzmann distributed so the ETG mode does not give particle transport.

  8. PARTICLE TRANSPORT AND DEPOSITION IN THE HOT-GAS FILTER AT WILSONVILLE

    SciTech Connect

    Goodarz Ahmadi

    1999-06-24

    Particle transport and deposition in the Wilsonville hot-gas filter vessel is studied. The filter vessel contains a total of 72 filters, which are arranged in two tiers. These are modeled by six upper and one lower cylindrical effective filters. An unstructured grid of 312,797 cells generated by GAMBIT is used in the simulations. The Reynolds stress model of FLUENT{trademark} (version 5.0) code is used for evaluating the gas mean velocities and root mean-square fluctuation velocities in the vessel. The particle equation of motion includes the drag, the gravitational and the lift forces. The turbulent instantaneous fluctuation velocity is simulated by a filtered Gaussian white-noise model provided by the FLUENT code. The particle deposition patterns are evaluated, and the effect of particle size is studied. The effect of turbulent dispersion, the lift force and the gravitational force are analyzed. The results show that the deposition pattern depends on particle size. Turbulent dispersion plays an important role in transport and deposition of particles. Lift and gravitational forces affect the motion of large particles, but has no effect on small particles.

  9. Validating a universal model of particle transport lengths with laboratory measurements of suspended grain motions

    NASA Astrophysics Data System (ADS)

    Naqshband, Suleyman; McElroy, Brandon; Mahon, Robert C.

    2017-05-01

    The mechanics of sediment transport are of fundamental importance for fluvio-deltaic morphodynamics. The present study focuses on quantifying particle motions and trajectories across a wide range of flow conditions. In particular, a continuous model is presented that predicts particle travel distances for saltation and suspension based on Rouse number and relative grain roughness. By utilizing a series of eight video cameras in a plexiglass flume direct measurements of the distributions of particle travel distances (excursion lengths) were obtained. To this end, experiments were carried out in dark under black lights with fluorescent painted plastic and quartz sand particles. For relatively high Rouse numbers indicating bed load dominant transport regime (P≥2.5), particle motion is governed by the effect of gravitational forces (settling velocities) and measured excursion lengths closely follow a Gaussian distribution. For P=2.5, particle motion is equally subjected to both gravitational and turbulent forces. Consequently, measured excursion lengths exhibit a bimodal distribution with two distinct peaks. As turbulent fluctuations increase and dominate particle motion over gravity (P<2.5), distributions of excursion lengths become unimodal and negative-skewed with mean values deviating from the modes. The predicted trend of linearly increasing excursion lengths with decreasing Rouse numbers is consistent with measured excursion lengths across a wide range of Rouse numbers >(P=1.8-8.9). Furthermore, measured excursion lengths are observed to fit within the predicted range of excursion lengths with no significant difference between measured excursion lengths of plastic and quartz sand particles.

  10. Fluctuation-Induced Particle Transport and Density Relaxation in a Stochastic Magnetic Field

    NASA Astrophysics Data System (ADS)

    Brower, David L.

    2009-11-01

    Particle transport and density relaxation associated with electromagnetic fluctuations is an unresolved problem of long standing in plasma physics and magnetic fusion research. In toroidal fusion plasmas, magnetic field fluctuations can arise spontaneously from global MHD instabilities, e.g., tearing fluctuations associated with sawtooth oscillations. Resonant magnetic perturbations (RMP) have also been externally imposed to mitigate the effect of edge localized modes (ELMs) by locally enhancing edge transport in Tokamaks. Understanding stochastic-field-driven transport processes is thus not only of basic science interest but possibly critical to ELM control in ITER. We report on the first direct measurement of magnetic fluctuation-induced particle transport in the core of a high-temperature plasma, the MST reversed field pinch. Measurements focus on the sawtooth crash, when the stochastic field resulting from tearing reconnection is strongest, and are accomplished using newly developed, laser-based, differential interferometry and Faraday rotation techniques. The measured electron particle flux, resulting from the correlated product of electron density (δn) and radial magnetic fluctuations (δbr), accounts for density profile relaxation during these magnetic reconnection events. Surprisingly, the electron diffusion is 30 times larger than estimates of ambipolarity-constrained transport in a stochastic magnetic field. A significant ion flux associated with parallel ion flow velocity fluctuations (δvi,//) correlated with δbr appears responsible for transport larger than predictions from the quasi-linear test particle model. These results indicate the need for improved understanding of particle transport in a stochastic magnetic field. Work performed in collaboration with W.X. Ding, W.F. Bergerson, T.F. Yates, UCLA; D.J. Den Hartog, G. Fiksel, S.C. Prager, J.S. Sarff and the MST Group, University of Wisconsin-Madison.

  11. Particle transport after pellet injection in the TJ-II stellarator

    NASA Astrophysics Data System (ADS)

    Velasco, J. L.; McCarthy, K. J.; Panadero, N.; Satake, S.; López-Bruna, D.; Alonso, A.; Calvo, I.; Dinklage, A.; Estrada, T.; Fontdecaba, J. M.; Hernández, J.; García, R.; Medina, F.; Ochando, M.; Pastor, I.; Perfilov, S.; Sánchez, E.; Soleto, A.; Van Milligen, B. Ph; Zhezhera, A.; the TJ-II Team

    2016-08-01

    We study radial particle transport in stellarator plasmas using cryogenic pellet injection. By means of perturbative experiments, we estimate the experimental particle flux and compare it with neoclassical simulations. Experimental evidence is obtained of the fact that core depletion in helical devices can be slowed-down even by pellets that do not reach the core region. This phenomenon is well captured by neoclassical predictions with DKES and FORTEC-3D.

  12. Commuter exposure to ultrafine particles in different urban locations, transportation modes and routes

    NASA Astrophysics Data System (ADS)

    Ragettli, Martina S.; Corradi, Elisabetta; Braun-Fahrländer, Charlotte; Schindler, Christian; de Nazelle, Audrey; Jerrett, Michael; Ducret-Stich, Regina E.; Künzli, Nino; Phuleria, Harish C.

    2013-10-01

    A better understanding of ultrafine particle (UFP) exposure in different urban transport microenvironments is important for epidemiological exposure assessments and for policy making. Three sub-studies were performed to characterize personal exposure to UFP concentration and average particle size distribution diameters in frequently traveled commuter microenvironments in the city of Basel, Switzerland. First, the spatial variation of sidewalk UFP exposures within urban areas and transport-specific microenvironments was explored. Second, exposure to UFP concentration and average particle size were quantified for five modes of transportation (walking, bicycle, bus, tram, car) during different times of the day and week, along the same route. Finally, the contribution of bicycle commuting along two different routes (along main roads, away from main roads) to total daily exposures was assessed by 24-h personal measurements. In general, smaller average particle sizes and higher UFP levels were measured at places and for travel modes in close proximity to traffic. Average trip UFP concentrations were higher in car (31,784 particles cm-³) and on bicycle (22,660 particles cm-³) compared to walking (19,481 particles cm-³) and public transportation (14,055-18,818 particles cm-³). Concentrations were highest for all travel modes during weekday morning rush hours, compared to other time periods. UFP concentration was lowest in bus, regardless of time period. Bicycle travel along main streets between home and work place (24 min on average) contributed 21% and 5% to total daily UFP exposure in winter and summer, respectively. Contribution of bicycle commutes to total daily UFP exposure could be reduced by half if main roads are avoided. Our results show the importance of considering commuter behavior and route choice in exposure assessment studies.

  13. Transport equations for low-energy solar particles in evolving interplanetary magnetic fields

    NASA Technical Reports Server (NTRS)

    Ng, C. K.

    1988-01-01

    Two new forms of a simplified Fokker-Planck equation are derived for the transport of low-energy solar energetic particles in an evolving interplanetary magnetic field, carried by a variable radial solar wind. An idealized solution suggests that the 'invariant' anisotropy direction reported by Allum et al. (1974) may be explained within the conventional theoretical framework. The equations may be used to relate studies of solar particle propagation to solar wind transients, and vice versa.

  14. Transport equations for low-energy solar particles in evolving interplanetary magnetic fields

    NASA Technical Reports Server (NTRS)

    Ng, C. K.

    1988-01-01

    Two new forms of a simplified Fokker-Planck equation are derived for the transport of low-energy solar energetic particles in an evolving interplanetary magnetic field, carried by a variable radial solar wind. An idealized solution suggests that the 'invariant' anisotropy direction reported by Allum et al. (1974) may be explained within the conventional theoretical framework. The equations may be used to relate studies of solar particle propagation to solar wind transients, and vice versa.

  15. Radial transport processes as a precursor to particle deposition in drinking water distribution systems.

    PubMed

    van Thienen, P; Vreeburg, J H G; Blokker, E J M

    2011-02-01

    Various particle transport mechanisms play a role in the build-up of discoloration potential in drinking water distribution networks. In order to enhance our understanding of and ability to predict this build-up, it is essential to recognize and understand their role. Gravitational settling with drag has primarily been considered in this context. However, since flow in water distribution pipes is nearly always in the turbulent regime, turbulent processes should be considered also. In addition to these, single particle effects and forces may affect radial particle transport. In this work, we present an application of a previously published turbulent particle deposition theory to conditions relevant for drinking water distribution systems. We predict quantitatively under which conditions turbophoresis, including the virtual mass effect, the Saffman lift force, and the Magnus force may contribute significantly to sediment transport in radial direction and compare these results to experimental observations. The contribution of turbophoresis is mostly limited to large particles (>50 μm) in transport mains, and not expected to play a major role in distribution mains. The Saffman lift force may enhance this process to some degree. The Magnus force is not expected to play any significant role in drinking water distribution systems. © 2010 Elsevier Ltd. All rights reserved.

  16. Modeling of Particle Transport on Channels and Gaps Exposed to Plasma Fluxes

    SciTech Connect

    Nieto-Perez, Martin

    2008-04-07

    Many problems in particle transport in fusion devices involve the transport of plasma or eroded particles through channels or gaps, such as in the case of trying to assess damage to delicate optical diagnostics collecting light through a slit or determining the deposition and codeposition on the gaps between tiles of plasma-facing components. A dynamic-composition Monte Carlo code in the spirit of TRIDYN, previously developed to study composition changes on optical mirrors subject to ion bombardment, has been upgraded to include motion of particles through a volume defined by sets of plane surfaces. Particles sputtered or reflected from the walls of the channel/gap can be tracked as well, allowing the calculation of wall impurity transport, either back to the plasma (for the case of a gap) or to components separated from the plasma by a channel/slit (for the case of optical diagnostics). Two examples of the code application to particle transport in fusion devices will be presented in this work: one will evaluate the erosion/impurity deposition rate on a mirror separated from a plasma source by a slit; the other case will look at the enhanced emission of tile material in the region of the gap between two tiles.

  17. Self-propelled particles that transport cargo through flowing blood and halt hemorrhage

    PubMed Central

    Baylis, James R.; Yeon, Ju Hun; Thomson, Max H.; Kazerooni, Amir; Wang, Xu; St. John, Alex E.; Lim, Esther B.; Chien, Diana; Lee, Anna; Zhang, Jesse Q.; Piret, James M.; Machan, Lindsay S.; Burke, Thomas F.; White, Nathan J.; Kastrup, Christian J.

    2015-01-01

    Delivering therapeutics deep into damaged tissue during bleeding is challenging because of the outward flow of blood. When coagulants cannot reach and clot blood at its source, uncontrolled bleeding can occur and increase surgical complications and fatalities. Self-propelling particles have been proposed as a strategy for transporting agents upstream through blood. Many nanoparticle and microparticle systems exhibiting autonomous or collective movement have been developed, but propulsion has not been used successfully in blood or used in vivo to transport therapeutics. We show that simple gas-generating microparticles consisting of carbonate and tranexamic acid traveled through aqueous solutions at velocities of up to 1.5 cm/s and delivered therapeutics millimeters into the vasculature of wounds. The particles transported themselves through a combination of lateral propulsion, buoyant rise, and convection. When loaded with active thrombin, these particles worked effectively as a hemostatic agent and halted severe hemorrhage in multiple animal models of intraoperative and traumatic bleeding. Many medical applications have been suggested for self-propelling particles, and the findings of this study show that the active self-fueled transport of particles can function in vivo to enhance drug delivery. PMID:26601282

  18. Transport and Removal experiment of Dust (TReD) for the Dust Particle Controls

    NASA Astrophysics Data System (ADS)

    Woo, Hyun-Jong; Cho, Soon-Gook; Chung, Kyu-Sun; Park, Eun-Kyung; Park, Sang-Joon; Hong, Suk-Ho

    2011-10-01

    The tokamak dust might be hazardous based on the radioactive from tritium or activated metals (e.g. tritium retention), toxic and/or explosive (or chemically reactive) in steam and air conditions. Therefore, controls of dust particle inventory can be treated a critical issue for safe operation of ITER and next step fusion devices. Although the dust removal experiments for fusion reactor had been tried in 1990s, it cannot directly applied to ITER and next step fusion reactors since scale issues does not solved. In this work, one developed the dedicated plasma device for the dust particle transport and removal tests to the level required in ITER or next step fusion reactors (~1 m dust particle transportation), which is called TReD (Transport and Removal experiments of Dust). The TReD also plan to test the dust particle detectors, such as electrostatic dust detector and capacitance diaphragm microbalance (CDM) used (or will be used) in fusion plasmas. The first experimental results of dust particle transport and removal will be explained along with the design concepts, assembly structure, also collaboration plans, etc.

  19. Two-dimensional transport model of coupled Brownian particles driven by biharmonic forces and constant forces

    NASA Astrophysics Data System (ADS)

    Wu, Weixia; Meng, Tao

    2017-01-01

    A directed transport model of coupled Brownian particles in a two-dimensional potential is established. In this model, the system of Brownian particles is driven by biharmonic forces and constant forces. By numerical simulation, the cooperative transport behaviours of the system are investigated. The results show that the average velocity of the system is significantly independent of the frequencies and intensities of the harmonic forces, the barrier height of the ratchet potential, coupling strength and noise intensity. The average velocity increases monotonically with increasing the intensities of the harmonic forces, and can reach some maximum values when the two frequencies are equal. In addition, the average velocity presents stochastic resonance and generalized resonance for noise intensity, coupling strength and the barrier height of the ratchet potential. Moreover, when a constant force is exerted on the ratchet potential direction, it will promote the directed transport of the system. But, when on the non-ratchet potential direction, the transport will not be affected.

  20. Role of electron temperature in the particle transport in the pedestal during pedestal evolution

    NASA Astrophysics Data System (ADS)

    Willensdorfer, M.; Fable, E.; Wolfrum, E.; Aumayr, F.; Fischer, R.; Reimold, F.; Ryter, F.

    2015-08-01

    The effect of the electron temperature (Te) on the edge particle transport in the pedestal is analyzed during the density build-up after the L-H transition. Electron cyclotron resonance heating was used to vary the pedestal temperature during the density evolution between subsequent H-mode phases. Although the pedestal Te and its gradients could be varied by a factor of 2, almost no change in the edge density evolution is observed within the measurement uncertainties. ASTRA was used to interpret the measurements and to analyze the dependence of the pedestal particle transport on the Te profile. Thermo-diffusion seems to play a minor role in the pedestal.

  1. Gyrokinetic simulations of mesoscale energetic particle-driven Alfvenic turbulent transport embedded in microturbulence

    SciTech Connect

    Bass, E. M.; Waltz, R. E.

    2010-11-15

    Energetic particle (EP) transport from local high-n toroidal Alfven eigenmodes (TAEs) and energetic particle modes (EPMs) is simulated with a gyrokinetic code. Linear and nonlinear simulations have identified a parameter range where the longwave TAE and EPM are unstable alongside the well-known ion-temperature-gradient (ITG) and trapped-electron-mode (TEM) instabilities. A new eigenvalue solver in GYRO facilitates this mode identification. States of nonlinearly saturated local TAE/EPM turbulent intensity are identified, showing a 'soft' transport threshold for enhanced energetic particle transport against the TAE/EPM drive from the EP pressure gradient. The very long-wavelength (mesoscale) TAE/EPM transport is saturated partially by nonlinear interaction with microturbulent ITG/TEM-driven zonal flows. Fixed-gradient-length, nonlinearly saturated states are accessible over a relatively narrow range of EP pressure gradient. Within this range, and in the local limit employed, TAE/EPM-driven transport more closely resembles drift-wave microturbulent transport than 'stiff' ideal MHD transport with a clamped critical total pressure gradient. At a higher, critical EP pressure gradient, fixed-gradient nonlinear saturation fails: EP transport increases without limit and background transport decreases. Presumably saturation is then obtained by relaxation of the EP pressure gradient to near this critical EP pressure gradient. If the background plasma gradients driving the ITG/TEM turbulence and zonal flows are weakened, the critical gradient collapses to the TAE/EPM linear stability threshold. Even at the critical EP pressure gradient there is no evidence that TAE/EPM instability significantly increases transport in the background plasma channels.

  2. Investigating coarse sediment particles transport using PTV and "smart-pebbles" instrumented with inertial sensors

    NASA Astrophysics Data System (ADS)

    Valyrakis, Manousos; Farhadi, Hamed

    2017-04-01

    This study, reports on the analysis of appropriately designed fluvial experiments investigating the transport of coarse bed material using two approaches: particle tracking velocimetry (PTV) to extract bulk transport parameters and inertia sensor data (via the use of "smart-pebbles") to obtain refined statistics for the transport of the particle. The purpose of this study is to provide further insight on the use of technologies (optical techniques and inertial sensors) that are complementary one to another, towards producing improved estimates of bedload transport in natural rivers. The experiments are conducted in the Water Engineering Lab at the University of Glasgow on a tilting recirculating flume with 90 cm width. Ten different discharges have been implemented in this study. A couple of fake beds, made of well-packed beads of three different sizes have been set up in the flume. The particle motion is captured by two high-speed commercial cameras, responsible for recording the top view covering the full length of the fake beds over which the "smart-pebble" is allowed to be transported. "Smart-pebbles" of four different densities are initially located at the upstream end of the configuration, fully exposed to the instream flow. These are instrumented with appropriate inertial sensors that allow recording the particle's motion, in the Langrangian frame, in high resolution. Specifically, the "smart-pebble" employ a tri-axial gyroscope, magnetometer and accelerometer, which are utilized to obtain minute linear and angular displacements in high frequency (up to 200Hz). However, these are not enough to accurately reconstruct the full trajectory of the particles rolling downstream. To that goal optical methods are used. In particular, by using particle tracking velocimetry data and image processing techniques, the location, orientation and velocities of the "smart-pebble" are derived. Specific consideration is given to appropriately preprocess the obtained video, as

  3. Modeling the solute transport by particle-tracing method with variable weights

    NASA Astrophysics Data System (ADS)

    Jiang, J.

    2016-12-01

    Particle-tracing method is usually used to simulate the solute transport in fracture media. In this method, the concentration at one point is proportional to number of particles visiting this point. However, this method is rather inefficient at the points with small concentration. Few particles visit these points, which leads to violent oscillation or gives zero value of concentration. In this paper, we proposed a particle-tracing method with variable weights. The concentration at one point is proportional to the sum of the weights of the particles visiting it. It adjusts the weight factors during simulations according to the estimated probabilities of corresponding walks. If the weight W of a tracking particle is larger than the relative concentration C at the corresponding site, the tracking particle will be splitted into Int(W/C) copies and each copy will be simulated independently with the weight W/Int(W/C) . If the weight W of a tracking particle is less than the relative concentration C at the corresponding site, the tracking particle will be continually tracked with a probability W/C and the weight will be adjusted to be C. By adjusting weights, the number of visiting particles distributes evenly in the whole range. Through this variable weights scheme, we can eliminate the violent oscillation and increase the accuracy of orders of magnitudes.

  4. Energetic particle transport in the presence of magnetic turbulence: influence of spectral extension and intermittency

    NASA Astrophysics Data System (ADS)

    Pucci, F.; Malara, F.; Perri, S.; Zimbardo, G.; Sorriso-Valvo, L.; Valentini, F.

    2016-07-01

    The transport of energetic particles in the presence of magnetic turbulence is an important but unsolved problem of space physics and astrophysics. Here, we aim at advancing the understanding of energetic particle transport by means of a new numerical model of synthetic magnetic turbulence. The model builds up a turbulent magnetic field as a superposition of space-localized fluctuations at different spatial scales. The resulting spectrum is isotropic with an adjustable spectral index. The model allows us to reproduce a spectrum broader than four decades, and to regulate the level of intermittency through a technique based on the p-model. Adjusting the simulation parameters close to solar wind conditions at 1 au, we inject ˜1 MeV protons in the turbulence realization and compute the parallel and perpendicular diffusion coefficients as a function of spectral extension, turbulence level, and intermittency. While a number of previous results are recovered in the appropriate limits, including anomalous transport regimes for low turbulence levels, we find that long spectral extensions tend to reduce the diffusion coefficients. Furthermore, we find for the first time that intermittency has an influence on parallel transport but not on perpendicular transport, with the parallel diffusion coefficient increasing with the level of intermittency. We also obtain the distribution of particle inversion times for parallel velocity, a power law for more than one decade, and compare it with the pitch angle scattering times observed in the solar wind. This parametric study can be useful to interpret particle propagation properties in astrophysical systems.

  5. Unique DNA-barcoded aerosol test particles for studying aerosol transport

    DOE PAGES

    Harding, Ruth N.; Hara, Christine A.; Hall, Sara B.; ...

    2016-03-22

    Data are presented for the first use of novel DNA-barcoded aerosol test particles that have been developed to track the fate of airborne contaminants in populated environments. Until DNATrax (DNA Tagged Reagents for Aerosol eXperiments) particles were developed, there was no way to rapidly validate air transport models with realistic particles in the respirable range of 1–10 μm in diameter. The DNATrax particles, developed at Lawrence Livermore National Laboratory (LLNL) and tested with the assistance of the Pentagon Force Protection Agency, are the first safe and effective materials for aerosol transport studies that are identified by DNA molecules. The usemore » of unique synthetic DNA barcodes overcomes the challenges of discerning the test material from pre-existing environmental or background contaminants (either naturally occurring or previously released). The DNATrax particle properties are demonstrated to have appropriate size range (approximately 1–4.5 μm in diameter) to accurately simulate bacterial spore transport. As a result, we describe details of the first field test of the DNATrax aerosol test particles in a large indoor facility.« less

  6. Unique DNA-barcoded aerosol test particles for studying aerosol transport

    SciTech Connect

    Harding, Ruth N.; Hara, Christine A.; Hall, Sara B.; Vitalis, Elizabeth A.; Thomas, Cynthia B.; Jones, A. Daniel; Day, James A.; Tur-Rojas, Vincent R.; Jorgensen, Trond; Herchert, Edwin; Yoder, Richard; Wheeler, Elizabeth K.; Farquar, George R.

    2016-03-22

    Data are presented for the first use of novel DNA-barcoded aerosol test particles that have been developed to track the fate of airborne contaminants in populated environments. Until DNATrax (DNA Tagged Reagents for Aerosol eXperiments) particles were developed, there was no way to rapidly validate air transport models with realistic particles in the respirable range of 1–10 μm in diameter. The DNATrax particles, developed at Lawrence Livermore National Laboratory (LLNL) and tested with the assistance of the Pentagon Force Protection Agency, are the first safe and effective materials for aerosol transport studies that are identified by DNA molecules. The use of unique synthetic DNA barcodes overcomes the challenges of discerning the test material from pre-existing environmental or background contaminants (either naturally occurring or previously released). The DNATrax particle properties are demonstrated to have appropriate size range (approximately 1–4.5 μm in diameter) to accurately simulate bacterial spore transport. As a result, we describe details of the first field test of the DNATrax aerosol test particles in a large indoor facility.

  7. Separation of Particle and Energy Transport in the H- and QH-mode Pedestal

    NASA Astrophysics Data System (ADS)

    Battaglia, D. J.; Chang, C. S.; Diallo, A.; Grierson, B. A.; Burrell, K. H.; Groebner, R. J.

    2014-10-01

    Net particle transport through the H-mode pedestal is dictated by anomalous transport mechanisms; however, a significant fraction of the energy transport is governed by enhanced transport of high-energy ions on collisionless orbits. The pedestal radial electric field (Er) is constrained to the value that balances this ion flux with a pinch of colder main ions and impurities as demonstrated using XGC0, a self-consistent full-f multi-species neoclassical calculation that includes neutral recycling and transport. These calculations resolve how edge modes can increase the anomalous particle transport with only a small effect on energy transport, the observed scaling of the height of the density pedestal with Ip, and the structure of Er in the pedestal. Quantitative agreement between XGC0 and the unique features of QH-mode, such as Ti anisotropy, large scrape-off layer Ti and intrinsic co-Ip edge rotation provide confidence that the simulation captures the kinetic effects in the pedestal that drive the neoclassical energy transport. Work supported in part by the US DOE under DE-AC02-09CH11466 and DE-FC02-04ER54698.

  8. Azimuthal anisotropy in particle distribution in a multiphase transport model

    NASA Astrophysics Data System (ADS)

    Sarkar, Soumya; Mali, Provash; Mukhopadhyay, Amitabha

    2017-08-01

    Anisotropic flow of hadronic matter is considered a sensitive tool to detect the early-stage dynamics of high-energy heavy-ion collisions. Taking the event-by-event fluctuations of the collision geometry into account, the elliptic flow parameter and the triangular flow parameter derived from the azimuthal distribution of produced hadrons are investigated within the framework of a multiphase transport (AMPT) model, at a collision energy that in near future will typically be available at the Facility for Antiproton and Ion Research. The dependence of elliptic and triangular flow parameters on initial fluctuations, on parton scattering cross sections and their mass ordering on different hadron species, and on the constituent quark number scaling are examined. The AMPT simulation cannot exactly match the elliptic flow results on Pb+Pb collision at 40 A GeV of the NA49 experiment. The simulation results presented in this work are expected to provide us with an insight to study flow properties at high baryonic density and at moderate temperature, and with an opportunity to compare similar results available from Relativistic Heavy Ion Collider and Large Hadron Collider experiments.

  9. Surfing along Filopodia: A Particle Transport Revealed by Molecular-Scale Fluctuation Analyses.

    PubMed

    Kohler, Felix; Rohrbach, Alexander

    2015-05-05

    Filopodia perform cellular functions such as environmental sensing or cell motility, but they also grab for particles and withdraw them leading to an increased efficiency of phagocytic uptake. Remarkably, withdrawal of micron-sized particles is also possible without noticeable movements of the filopodia. Here, we demonstrate that polystyrene beads connected by optical tweezers to the ends of adherent filopodia of J774 macrophages, are transported discontinuously toward the cell body. After a typical resting time of 1-2 min, the cargo is moved with alternating velocities, force constants, and friction constants along the surface of the filopodia. This surfing-like behavior along the filopodium is recorded by feedback-controlled interferometric three-dimensional tracking of the bead motions at 10-100 kHz. We measured transport velocities of up to 120 nm/s and transport forces of ∼ 70 pN. Small changes in position, fluctuation width, and temporal correlation, which are invisible in conventional microscopy, indicate molecular reorganization of transport-relevant proteins in different phases of the entire transport process. A detailed analysis implicates a controlled particle transport with fingerprints of a nanoscale unbinding/binding behavior. The manipulation and analysis methods presented in our study may also be helpful in other fields of cellular biophysics.

  10. Surfing along Filopodia: A Particle Transport Revealed by Molecular-Scale Fluctuation Analyses

    PubMed Central

    Kohler, Felix; Rohrbach, Alexander

    2015-01-01

    Filopodia perform cellular functions such as environmental sensing or cell motility, but they also grab for particles and withdraw them leading to an increased efficiency of phagocytic uptake. Remarkably, withdrawal of micron-sized particles is also possible without noticeable movements of the filopodia. Here, we demonstrate that polystyrene beads connected by optical tweezers to the ends of adherent filopodia of J774 macrophages, are transported discontinuously toward the cell body. After a typical resting time of 1–2 min, the cargo is moved with alternating velocities, force constants, and friction constants along the surface of the filopodia. This surfing-like behavior along the filopodium is recorded by feedback-controlled interferometric three-dimensional tracking of the bead motions at 10–100 kHz. We measured transport velocities of up to 120 nm/s and transport forces of ∼70 pN. Small changes in position, fluctuation width, and temporal correlation, which are invisible in conventional microscopy, indicate molecular reorganization of transport-relevant proteins in different phases of the entire transport process. A detailed analysis implicates a controlled particle transport with fingerprints of a nanoscale unbinding/binding behavior. The manipulation and analysis methods presented in our study may also be helpful in other fields of cellular biophysics. PMID:25954870

  11. Nonlinear alfvénic fast particle transport and losses

    NASA Astrophysics Data System (ADS)

    Schneller, M.; Lauber, Ph; García-Muñoz, M.; Brüdgam, M.; Günter, S.

    2012-12-01

    Magnetohydrodynamic instabilities like Toroidal Alfvén Eigenmodes or core-localized modes such as Beta Induced Alfvén Eigenmodes and Reversed Shear Alfvén Eigenmodes driven by fast particles can lead to significant redistribution and losses in fusion devices. This is observed in many ASDEX Upgrade discharges. The present work aims to understand the underlying resonance mechanisms, especially in the presence of multiple modes with different frequencies. Resonant mode coupling mechanisms are investigated using the drift kinetic HAGIS code [Pinches 1998]. Simulations were performed for different plasma equilibria, in particular for different q profiles, employing the availability of improved experimental data. A study was carried out, investigating double-resonant mode coupling with respect to various overlapping scenarios. It was found that, depending on the radial mode distance, double-resonance is able to enhance growth rates as well as mode amplitudes significantly. Small radial mode distances, however can also lead to strong nonlinear mode stabilization of a linear dominant mode. With the extended version of HAGIS, losses were simulated and directly compared with experimental loss measurements. The losses' phase space distribution as well as their ejection signal is consistent with experimental data. Furthermore, it allowed to characterize them as prompt, resonant or stochastic. It was found that especially in multiple mode scenarios (with different mode frequencies), abundant incoherent losses occur in the lower energy range, due to a broad phase-space stochastization. The incoherent higher energetic losses are "prompt", i.e. their initial energy is too large for confined orbits.

  12. Numerical modeling of pollutant transport using a Lagrangian marker particle technique

    NASA Technical Reports Server (NTRS)

    Spaulding, M.

    1976-01-01

    A derivation and code were developed for the three-dimensional mass transport equation, using a particle-in-cell solution technique, to solve coastal zone waste discharge problems where particles are a major component of the waste. Improvements in the particle movement techniques are suggested and typical examples illustrated. Preliminary model comparisons with analytic solutions for an instantaneous point release in a uniform flow show good results in resolving the waste motion. The findings to date indicate that this computational model will provide a useful technique to study the motion of sediment, dredged spoils, and other particulate waste commonly deposited in coastal waters.

  13. Nonequilibrium charge transport in an interacting open system: Two-particle resonance and current asymmetry

    NASA Astrophysics Data System (ADS)

    Roy, Dibyendu; Soori, Abhiram; Sen, Diptiman; Dhar, Abhishek

    2009-08-01

    We use the Lippman-Schwinger scattering theory to study nonequilibrium electron transport through an interacting open quantum dot. The two-particle current is evaluated exactly while we use perturbation theory to calculate the current when the leads are Fermi liquids at different chemical potentials. We find an interesting two-particle resonance induced by the interaction and obtain criteria to observe it when a small bias is applied across the dot. Finally, for a system without spatial inversion symmetry, we find that the two-particle current is quite different depending on whether the electrons are incident from the left or the right lead.

  14. Nanoparticle transport in heterogeneous porous media with particle tracking numerical methods

    NASA Astrophysics Data System (ADS)

    Pham, Ngoc H.; Papavassiliou, Dimitrios V.

    2017-01-01

    In this article, transport and retention of nanoparticles that flow in suspension through packed beds with unconsolidated spheres and through consolidated Berea sandstone are numerically explored. The surfaces exhibit electrical charge heterogeneity where particles can deposit blocking the surrounding surface deposition sites. The lattice Boltzmann method with Lagrangian particle tracking are the techniques employed. Four ideal patterns of surface charge heterogeneity are adopted for the packed sphere beds, while a real distribution of charge heterogeneity is determined for the Berea core through micro-CT image segmentation. It is found that particle breakthrough curves do not reach a plateau, unless the pore surfaces are completely saturated. Surface saturation also enhances particle propagation because of the surface blocking mechanism, reducing the effective particle deposition rate. In addition, surface saturation mitigates the effect of the pattern of heterogeneity on particle retention, which might be pronounced when blocking is not taken into account. It is also observed from the case of Berea core that the heterogeneity of the mineralogical surfaces disturbs particle transport depending on the physicochemical properties of the surfaces. Likewise, similarity of the mineralogical surface properties is a prerequisite for the commonly used patch-wise model with Langmuirian blocking to reproduce nanoparticle breakthrough in such porous media.

  15. Particle tracking velocimetry to study two-size bedload transport on steep slopes

    NASA Astrophysics Data System (ADS)

    Lafaye de Micheaux, Hugo; Dudill, Ashley; Ducottet, Christophe; Frey, Philippe

    2015-04-01

    Bedload, the part of sediment transport remaining in contact with the bed has been mainly investigated from a fluid perspective. Bedload should also be considered from a granular point of view, and take into account the grain-grain interactions. This paper focuses on particle tracking velocimetry algorithms to better understand bedload transport at the particle scale. Two-size mixtures of spherical glass beads entrained by a shallow turbulent and supercritical water flow were analysed in a quasi-two-dimensional 10 % steep channel with a mobile bed. The coarse particle diameters were 6 or 5 mm and the finer diameters ranged from about 0.7 to 4 mm. Water flow and sediment rates were kept constant at the inlet. After obtaining bed load equilibrium for the coarser particles only, that is, neither bed degradation nor aggradation over sufficiently long time intervals, and a bed slope parallel to the flume slope, finer sediment was introduced. The evolution towards a new equilibrium state was recorded through video acquisition from the side by a high-speed camera. Particle tracking algorithms made it possible to determine the position, velocity and trajectory of a very large number of both coarse and sometimes fine particles over the depth of the bedload layer. This paper will present in detail the algorithms used for detecting and tracking the glass beads, before analysing results on particle velocity distributions and depth profiles as well as results on concentrations and sediment rates.

  16. Transport and selective chaining of bidisperse particles in a travelling wave potential.

    PubMed

    Tierno, Pietro; Straube, Arthur V

    2016-05-01

    We combine experiments, theory and numerical simulation to investigate the dynamics of a binary suspension of paramagnetic colloidal particles dispersed in water and transported above a stripe-patterned magnetic garnet film. The substrate generates a one-dimensional periodic energy landscape above its surface. The application of an elliptically polarized rotating magnetic field causes the landscape to translate, inducing direct transport of paramagnetic particles placed above the film. The ellipticity of the applied field can be used to control and tune the interparticle interactions, from net repulsive to net attractive. When considering particles of two distinct sizes, we find that, depending on their elevation above the surface of the magnetic substrate, the particles feel effectively different potentials, resulting in different mobilities. We exploit this feature to induce selective chaining for certain values of the applied field parameters. In particular, when driving two types of particles, we force only one type to condense into travelling parallel chains. These chains confine the movement of the other non-chaining particles within narrow colloidal channels. This phenomenon is explained by considering the balance of pairwise magnetic forces between the particles and their individual coupling with the travelling landscape.

  17. Ice cloud formation potential by free tropospheric particles from long-range transport over the Northern Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    China, Swarup; Alpert, Peter A.; Zhang, Bo; Schum, Simeon; Dzepina, Katja; Wright, Kendra; Owen, R. Chris; Fialho, Paulo; Mazzoleni, Lynn R.; Mazzoleni, Claudio; Knopf, Daniel A.

    2017-03-01

    Long-range transported free tropospheric particles can play a significant role on heterogeneous ice nucleation. Using optical and electron microscopy we examine the physicochemical characteristics of ice nucleating particles (INPs). Particles were collected on substrates from the free troposphere at the remote Pico Mountain Observatory in the Azores Islands, after long-range transport and aging over the Atlantic Ocean. We investigate four specific events to study the ice formation potential by the collected particles with different ages and transport patterns. We use single-particle analysis, as well as bulk analysis to characterize particle populations. Both analyses show substantial differences in particle composition between samples from the four events; in addition, single-particle microscopy analysis indicates that most particles are coated by organic material. The identified INPs contained mixtures of dust, aged sea salt and soot, and organic material acquired either at the source or during transport. The temperature and relative humidity (RH) at which ice formed, varied only by 5% between samples, despite differences in particle composition, sources, and transport patterns. We hypothesize that this small variation in the onset RH may be due to the coating material on the particles. This study underscores and motivates the need to further investigate how long-range transported and atmospherically aged free tropospheric particles impact ice cloud formation.

  18. Ice cloud formation potential by free tropospheric particles from long-range transport over the Northern Atlantic Ocean

    DOE PAGES

    China, Swarup; Alpert, Peter A.; Zhang, Bo; ...

    2017-02-27

    Long-range transported free tropospheric particles can play a significant role on heterogeneous ice nucleation. Using optical and electron microscopy we examine the physicochemical characteristics of ice nucleating particles (INPs). Particles were collected on substrates from the free troposphere at the remote Pico Mountain Observatory in the Azores Islands, after long-range transport and aging over the Atlantic Ocean. We investigate four specific events to study the ice formation potential by the collected particles with different ages and transport patterns. We use single-particle analysis, as well as bulk analysis to characterize particle populations. Both analyses show substantial differences in particle composition betweenmore » samples from the four events; in addition, single-particle microscopy analysis indicates that most particles are coated by organic material. The identified INPs contained mixtures of dust, aged sea salt and soot, and organic material acquired either at the source or during transport. The temperature and relative humidity (RH) at which ice formed, varied only by 5% between samples, despite differences in particle composition, sources, and transport patterns. We hypothesize that this small variation in the onset RH may be due to the coating material on the particles. Finally, this study underscores and motivates the need to further investigate how long-range transported and atmospherically aged free tropospheric particles impact ice cloud formation.« less

  19. Self-propelled particle transport in regular arrays of rigid asymmetric obstacles.

    PubMed

    Potiguar, Fabricio Q; Farias, G A; Ferreira, W P

    2014-07-01

    We report numerical results which show the achievement of net transport of self-propelled particles (SPPs) in the presence of a two-dimensional regular array of convex, either symmetric or asymmetric, rigid obstacles. The repulsive interparticle (soft disks) and particle-obstacle interactions present no alignment rule. We find that SPPs present a vortex-type motion around convex symmetric obstacles even in the absence of hydrodynamic effects. Such a motion is not observed for a single SPP, but is a consequence of the collective motion of SPPs around the obstacles. A steady particle current is spontaneously established in an array of nonsymmetric convex obstacles (which presents no cavity in which particles may be trapped), and in the absence of an external field. Our results are mainly a consequence of the tendency of the self-propelled particles to attach to solid surfaces.

  20. Effect of particle settling on lidar profiles of long-range transported Saharan aerosols

    NASA Astrophysics Data System (ADS)

    Gasteiger, Josef; Groß, Silke

    2016-04-01

    A large amount of desert aerosol is transported in the Saharan Air Layer (SAL) westwards from Africa over the Atlantic Ocean. Lidar profiles of transported Saharan aerosol may contain some information about the vertically-resolved aerosol microphysics that could be used to characterize processes that affected the measured aerosol during transport. We present modelled lidar profiles of long-range transported Saharan aerosol assuming that initially the SAL is well-mixed and that there is no vertical mixing of air within the SAL as soon as it reaches the Atlantic. We consider Stokes gravitational settling of aerosol particles over the ocean. The lidar profiles are calculated using optical models for irregularly-shaped mineral dust particles assuming settling-induced particle removal as function of distance from the SAL top. Within the SAL we find a decrease of both the backscatter coefficients and the linear depolarization ratios with decreasing distance from the SAL top. For example, the linear depolarization ratio at a wavelength of 532nm decreases from 0.289 at 1000m to 0.256 at 200m and 0.215 at 100m below SAL top. We compare the modelled backscatter coefficients and linear depolarization ratios to ground-based lidar measurements performed during the SALTRACE field campaign in Barbados (Caribbean) and find agreement within the estimated uncertainties. We discuss the uncertainties of our modeling approach in our presentation. Assumed mineral dust particle shapes, assumed particle mixture properties, and assumptions about processes in the SAL over the continent and the ocean are important aspects to be considered. Uncertainties are relevant for the potential of lidar measurements of transported Saharan dust to learn something about processes occuring in the SAL during long-range transport. We also compare our modeling results to modeling results previously published in the literature.

  1. Generalized balance equations for charged particle transport via localized and delocalized states: Mobility, generalized Einstein relations, and fractional transport

    NASA Astrophysics Data System (ADS)

    Stokes, Peter W.; Philippa, Bronson; Cocks, Daniel; White, Ronald D.

    2017-04-01

    A generalized phase-space kinetic Boltzmann equation for highly nonequilibrium charged particle transport via localized and delocalized states is used to develop continuity, momentum, and energy balance equations, accounting explicitly for scattering, trapping and detrapping, and recombination loss processes. Analytic expressions detail the effect of these microscopic processes on mobility and diffusivity. Generalized Einstein relations (GER) are developed that enable the anisotropic nature of diffusion to be determined in terms of the measured field dependence of the mobility. Interesting phenomena such as negative differential conductivity and recombination heating and cooling are shown to arise from recombination loss processes and the localized and delocalized nature of transport. Fractional transport emerges naturally within this framework through the appropriate choice of divergent mean waiting time distributions for localized states, and fractional generalizations of the GER and mobility are presented. Signature impacts on time-of-flight current transients of recombination loss processes via both localized and delocalized states are presented.

  2. Modeling bimolecular reactions and transport in porous media via particle tracking

    NASA Astrophysics Data System (ADS)

    Ding, Dong; Benson, David A.; Paster, Amir; Bolster, Diogo

    2013-03-01

    We use a particle-tracking method to simulate several one-dimensional bimolecular reactive transport experiments. In our numerical scheme, the reactants are represented by particles: advection and dispersion dominate the flow, and molecular diffusion dictates, in large part, the reactions. The particle/particle reactions are determined by a combination of two probabilities dictated by the physics of transport and energetics of reaction. The first is that reactant particles occupy the same volume over a short time interval. The second is the conditional probability that two collocated particles favorably transform into a reaction. The first probability is a direct physical representation of the degree of mixing in an advancing interface between dissimilar waters, and as such lacks empirical parameters except for the user-defined number of particles. This number can be determined analytically from concentration autocovariance, if this type of data is available. The simulations compare favorably to two physical experiments. In one, the concentration of product, 1,2-naphthoquinoe-4-aminobenzene (NQAB) from reaction between 1,2-naphthoquinone-4-sulfonic acid (NQS) and aniline (AN), was measured at the outflow of a column filled with glass beads at different times. In the other, the concentration distribution of reactants (CuSO and EDTA) and product (CuEDTA) were quantified by snapshots of light transmitted through a column packed with cryolite sand. These snapshots allow us to estimate concentration statistics and calculate the required number of particles. The experiments differ significantly due to a ˜107 difference in thermodynamic rate coefficients, making the latter experiment effectively instantaneous. When compared to the solution of the advection-dispersion-reaction equation (ADRE) with the well-mixed reaction coefficient, the experiments and the particle-tracking simulations showed on the order of 20-40% less overall product, which is attributed to poor mixing

  3. SIMULATION OF ENERGETIC PARTICLE TRANSPORT AND ACCELERATION AT SHOCK WAVES IN A FOCUSED TRANSPORT MODEL: IMPLICATIONS FOR MIXED SOLAR PARTICLE EVENTS

    SciTech Connect

    Kartavykh, Y. Y.; Dröge, W.; Gedalin, M.

    2016-03-20

    We use numerical solutions of the focused transport equation obtained by an implicit stochastic differential equation scheme to study the evolution of the pitch-angle dependent distribution function of protons in the vicinity of shock waves. For a planar stationary parallel shock, the effects of anisotropic distribution functions, pitch-angle dependent spatial diffusion, and first-order Fermi acceleration at the shock are examined, including the timescales on which the energy spectrum approaches the predictions of diffusive shock acceleration theory. We then consider the case that a flare-accelerated population of ions is released close to the Sun simultaneously with a traveling interplanetary shock for which we assume a simplified geometry. We investigate the consequences of adiabatic focusing in the diverging magnetic field on the particle transport at the shock, and of the competing effects of acceleration at the shock and adiabatic energy losses in the expanding solar wind. We analyze the resulting intensities, anisotropies, and energy spectra as a function of time and find that our simulations can naturally reproduce the morphologies of so-called mixed particle events in which sometimes the prompt and sometimes the shock component is more prominent, by assuming parameter values which are typically observed for scattering mean free paths of ions in the inner heliosphere and energy spectra of the flare particles which are injected simultaneously with the release of the shock.

  4. Selective transport of Fe(III) using ionic imprinted polymer (IIP) membrane particle

    NASA Astrophysics Data System (ADS)

    Djunaidi, Muhammad Cholid; Jumina, Siswanta, Dwi; Ulbricht, Mathias

    2015-12-01

    The membrane particles was prepared from polyvinyl alcohol (PVA) and polymer IIP with weight ratios of 1: 2 and 1: 1 using different adsorbent templates and casting thickness. The permeability of membrane towards Fe(III) and also mecanism of transport were studied. The selectivity of the membrane for Fe(III) was studied by performing adsorption experiments also with Cr(III) separately. In this study, the preparation of Ionic Imprinted Polymer (IIP) membrane particles for selective transport of Fe (III) had been done using polyeugenol as functional polymer. Polyeugenol was then imprinted with Fe (III) and then crosslinked with PEGDE under alkaline condition to produce polyeugenol-Fe-PEGDE polymer aggregates. The agrregates was then crushed and sieved using mesh size of 80 and the powder was then used to prepare the membrane particles by mixing it with PVA (Mr 125,000) solution in 1-Methyl-2-pyrrolidone (NMP) solvent. The membrane was obtained after casting at a speed of 25 m/s and soaking in NaOH solution overnight. The membrane sheet was then cut and Fe(III) was removed by acid to produce IIP membrane particles. Analysis of the membrane and its constituent was done by XRD, SEM and size selectivity test. Experimental results showed the transport of Fe(III) was faster with the decrease of membrane thickness, while the higher concentration of template ion correlates with higher Fe(III) being transported. However, the transport of Fe(III) was slower for higher concentration of PVA in the membrane. IImparticles works through retarded permeation mechanism, where Fe(III) was bind to the active side of IIP. The active side of IIP membrane was dominated by the -OH groups. The selectivity of all IIP membranes was confirmed as they were all unable to transport Cr (III), while NIP (Non-imprinted Polymer) membrane was able transport Cr (III).

  5. Laboratory observations of sediment transport using combined particle image and tracking velocimetry (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Frank, Donya; Calantoni, Joseph

    2017-05-01

    Improved understanding of coastal hydrodynamics and morphology will lead to more effective mitigation measures that reduce fatalities and property damage caused by natural disasters such as hurricanes. We investigated sediment transport under oscillatory flow over flat and rippled beds with phase-separated stereoscopic Particle Image Velocimetry (PIV). Standard PIV techniques severely limit measurements at the fluid-sediment interface and do not allow for the observation of separate phases in multi-phase flow (e.g. sand grains in water). We have implemented phase-separated Particle Image Velocimetry by adding fluorescent tracer particles to the fluid in order to observe fluid flow and sediment transport simultaneously. While sand grains scatter 532 nm wavelength laser light, the fluorescent particles absorb 532 nm laser light and re-emit light at a wavelength of 584 nm. Optical long-pass filters with a cut-on wavelength of 550 nm were installed on two cameras configured to perform stereoscopic PIV to capture only the light emitted by the fluorescent tracer particles. A third high-speed camera was used to capture the light scattered by the sand grains allowing for sediment particle tracking via particle tracking velocimetry (PTV). Together, these overlapping, simultaneously recorded images provided sediment particle and fluid velocities at high temporal and spatial resolution (100 Hz sampling with 0.8 mm vector spacing for the 2D-3C fluid velocity field). Measurements were made under a wide range of oscillatory flows over flat and rippled sand beds. The set of observations allow for the investigation of the relative importance of pressure gradients and shear stresses on sediment transport.

  6. Analysis of a model for transport of charged particles in a random magnetic field

    NASA Technical Reports Server (NTRS)

    Hanson, F. B.; Ramanathan, G. V.; Klimas, A.; Sandri, G.

    1973-01-01

    A model for the transport of charged particles in a random magnetic field is a Volterra integrodifferential equation with a long-range kernel. The integrodifferential equation is solved numerically with the method of Bellman, Kalaba, and Lockett (1966). The results are shown to be in excellent agreement with analytical asymptotic results.-

  7. TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS

    EPA Science Inventory

    TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS. Zhe Zhang*, Huawei Shi, Clement Kleinstreuer, Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695-7910; Chong S. Kim, National Health and En...

  8. Using Cytochome c to Monitor Electron Transport and Inhibition in Beef Heart Submitochondrial Particles

    ERIC Educational Resources Information Center

    Melin, Amanda D.; Lohmeier-Vogel, Elke M.

    2004-01-01

    We present a two-part undergraduate laboratory exercise. In the first part, electron transport in bovine heart submitochondrial particles causing reduction of cytochrome c is monitored at 550 nm. Redox-active dyes have historically been used in most previous undergraduate laboratory exercises of this sort but do not demonstrate respiratory…

  9. Using Cytochome c to Monitor Electron Transport and Inhibition in Beef Heart Submitochondrial Particles

    ERIC Educational Resources Information Center

    Melin, Amanda D.; Lohmeier-Vogel, Elke M.

    2004-01-01

    We present a two-part undergraduate laboratory exercise. In the first part, electron transport in bovine heart submitochondrial particles causing reduction of cytochrome c is monitored at 550 nm. Redox-active dyes have historically been used in most previous undergraduate laboratory exercises of this sort but do not demonstrate respiratory…

  10. TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS

    EPA Science Inventory

    TRANSPORT AND DEPOSITION OF NANO-SIZE PARTICLES IN THE UPPER HUMAN RESPIRATORY AIRWAYS. Zhe Zhang*, Huawei Shi, Clement Kleinstreuer, Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695-7910; Chong S. Kim, National Health and En...

  11. From Mechanical Motion to Brownian Motion, Thermodynamics and Particle Transport Theory

    ERIC Educational Resources Information Center

    Bringuier, E.

    2008-01-01

    The motion of a particle in a medium is dealt with either as a problem of mechanics or as a transport process in non-equilibrium statistical physics. The two kinds of approach are often unrelated as they are taught in different textbooks. The aim of this paper is to highlight the link between the mechanical and statistical treatments of particle…

  12. Enhanced transport of Si-coated nanoscale zero-valent iron particles in porous media.

    PubMed

    HonetschlÄgerová, Lenka; Janouškovcová, Petra; Kubal, Martin

    2016-01-01

    Laboratory column experiments were conducted to evaluate the effect of previously described silica coating method on the transport of nanoscale zero-valent iron (nZVI) in porous media. The silica coating method showed the potential to prevent the agglomeration of nZVI. Transport experiments were conducted using laboratory-scale sand-packed columns at conditions that were very similar of natural groundwater. Transport properties of non-coated and silica-coated nZVI are investigated in columns of 40 cm length, which were filled with porous media. A suspension was injected in three different Fe particle concentrations (100, 500, and 1000 mg/L) at flow 5  mL/min. Experimental results were compared using nanoparticle attachment efficiency and travel distances which were calculated by classical particle filtration theory. It was found that non-coated particles were essentially immobile in porous media. In contrast, silica-coated particles showed significant transport distances at the tested conditions. Results of this study suggest that silica can increase nZVI mobility in the subsurface.

  13. From Mechanical Motion to Brownian Motion, Thermodynamics and Particle Transport Theory

    ERIC Educational Resources Information Center

    Bringuier, E.

    2008-01-01

    The motion of a particle in a medium is dealt with either as a problem of mechanics or as a transport process in non-equilibrium statistical physics. The two kinds of approach are often unrelated as they are taught in different textbooks. The aim of this paper is to highlight the link between the mechanical and statistical treatments of particle…

  14. Transport and trapping of dust particles in a potential well created by inductively coupled diffused plasmas

    NASA Astrophysics Data System (ADS)

    Choudhary, Mangilal; Mukherjee, S.; Bandyopadhyay, P.

    2016-05-01

    A versatile linear dusty (complex) plasma device is designed to study the transport and dynamical behavior of dust particles in a large volume. Diffused inductively coupled plasma is generated in the background of argon gas. A novel technique is used to introduce the dust particles in the main plasma by striking a secondary direct current glow discharge. These dust particles are found to get trapped in an electrostatic potential well, which is formed due to the combination of the ambipolar electric field caused by diffusive plasma and the field produced by the charged glass wall of the vacuum chamber. According to the requirements, the volume of the dust cloud can be controlled very precisely by tuning the plasma and discharge parameters. The present device can be used to address the underlying physics behind the transport of dust particles, self-excited dust acoustic waves, and instabilities. The detailed design of this device, plasma production and characterization, trapping and transport of the dust particle, and some of the preliminary experimental results are presented.

  15. Transport and trapping of dust particles in a potential well created by inductively coupled diffused plasmas.

    PubMed

    Choudhary, Mangilal; Mukherjee, S; Bandyopadhyay, P

    2016-05-01

    A versatile linear dusty (complex) plasma device is designed to study the transport and dynamical behavior of dust particles in a large volume. Diffused inductively coupled plasma is generated in the background of argon gas. A novel technique is used to introduce the dust particles in the main plasma by striking a secondary direct current glow discharge. These dust particles are found to get trapped in an electrostatic potential well, which is formed due to the combination of the ambipolar electric field caused by diffusive plasma and the field produced by the charged glass wall of the vacuum chamber. According to the requirements, the volume of the dust cloud can be controlled very precisely by tuning the plasma and discharge parameters. The present device can be used to address the underlying physics behind the transport of dust particles, self-excited dust acoustic waves, and instabilities. The detailed design of this device, plasma production and characterization, trapping and transport of the dust particle, and some of the preliminary experimental results are presented.

  16. Methodologies for Removing/Desorbing and Transporting Particles from Surfaces to Instrumentation

    NASA Astrophysics Data System (ADS)

    Miller, Carla J.; Cespedes, Ernesto R.

    2012-12-01

    Explosive trace detection (ETD) continues to be a key technology supporting the fight against terrorist bombing threats. Very selective and sensitive ETD instruments have been developed to detect explosive threats concealed on personnel, in vehicles, in luggage, and in cargo containers, as well as for forensic analysis (e.g. post blast inspection, bomb-maker identification, etc.) in a broad range of homeland security, law enforcement, and military applications. A number of recent studies have highlighted the fact that significant improvements in ETD systems' capabilities will be achieved, not by increasing the selectivity/sensitivity of the sensors, but by improved techniques for particle/vapor sampling, pre-concentration, and transport to the sensors. This review article represents a compilation of studies focused on characterizing the adhesive properties of explosive particles, the methodologies for removing/desorbing these particles from a range of surfaces, and approaches for transporting them to the instrument. The objectives of this review are to summarize fundamental work in explosive particle characterization, to describe experimental work performed in harvesting and transport of these particles, and to highlight those approaches that indicate high potential for improving ETD capabilities.

  17. Gyrokinetic Particle Simulation of Turbulent Transport in Burning Plasmas (GPS - TTBP) Final Report

    SciTech Connect

    Chame, Jacqueline

    2011-05-27

    The goal of this project is the development of the Gyrokinetic Toroidal Code (GTC) Framework and its applications to problems related to the physics of turbulence and turbulent transport in tokamaks,. The project involves physics studies, code development, noise effect mitigation, supporting computer science efforts, diagnostics and advanced visualizations, verification and validation. Its main scientific themes are mesoscale dynamics and non-locality effects on transport, the physics of secondary structures such as zonal flows, and strongly coherent wave-particle interaction phenomena at magnetic precession resonances. Special emphasis is placed on the implications of these themes for rho-star and current scalings and for the turbulent transport of momentum. GTC-TTBP also explores applications to electron thermal transport, particle transport; ITB formation and cross-cuts such as edge-core coupling, interaction of energetic particles with turbulence and neoclassical tearing mode trigger dynamics. Code development focuses on major initiatives in the development of full-f formulations and the capacity to simulate flux-driven transport. In addition to the full-f -formulation, the project includes the development of numerical collision models and methods for coarse graining in phase space. Verification is pursued by linear stability study comparisons with the FULL and HD7 codes and by benchmarking with the GKV, GYSELA and other gyrokinetic simulation codes. Validation of gyrokinetic models of ion and electron thermal transport is pursed by systematic stressing comparisons with fluctuation and transport data from the DIII-D and NSTX tokamaks. The physics and code development research programs are supported by complementary efforts in computer sciences, high performance computing, and data management.

  18. Transport of Lactate-modified Nanoscale Iron Particles in Porous Media

    NASA Astrophysics Data System (ADS)

    Reddy, K. R.

    2012-12-01

    Nanoscale iron particles (NIP) have recently shown to be effective for dehalogenation of recalcitrant organic contaminants such as pentachlorphenol (PCP) and dinitrotoluene (DNT) in the environment. However, effective transport of NIP into the contaminated subsurface zones is crucial for the success of in-situ remediation. Previous studies showed that the transport of NIP in soils is very limited and surface-modification of NIP is required to achieve adequate transport. This paper investigates the transport of NIP and lactate-modified NIP (LMNIP) through four different porous media (sands with different particle size and distribution). A series of laboratory column experiments was conducted to quantify the transport of NIP and LMNIP at two different slurry concentrations of 1 g/L and 4 g/L under two different flow velcoities. NIP used in this study possessed magentic properties, thus a magnetic susceptibility sensor system was used to monitor the changes in magnetic susceptibility (MS) along the length of the column at different times during the experiments. At the end of testing, the distribution of total Fe in the sand column was measured. Results showed a linear correlation between the Fe concentration and MS and it was used to assess the transient transport of NIP and LMNIP in the sand columns. Results showed that LMNIP transported better than bare NIP and higher concentration of 4 g/L LMNIP exhibited unform and greater transport compared to other tested conditions. Transport of NIP increased in the order from fine Ottawa sand > medium field sand > coarse field sand > coarse Ottawa sand. Filtration theory and advective-dispersion equation with reaction were applied to capture the transport response of NIP and LMNIP in the sand columns.

  19. Particle velocity and sediment transport at the limit of deposition in sewers.

    PubMed

    Ota, J J; Perrusquía, G S

    2013-01-01

    This paper focuses on the sediment particle while it is transported at the limit of deposition in storm sewers, i.e. as bed load at the limit of concentration that leads to sediment deposition. Although many empirical sediment transport equations are known in the literature, there is only limited knowledge concerning particle velocity. Sediment particle and sphere velocity measurements were carried out in two pipe channels and these results led to the development of a semi-theoretical equation for sediment transport at the limit of deposition in sewers. Even in the transport process without deposition, sediment movement is slower than water velocity and depends on the angle of repose of sediment with a diameter d on the roughness k of the pipe channel. Instead of classical dimensionless bed shear stress ψ, a modified dimensionless bed shear stress ψ (d/k)(2/3) was suggested, based on the angle of repose and this parameter was proved to be significant for quantifying the transport capacity. The main purpose of this article is to emphasize the importance of careful observation of experiments. Not only number of tests, but physical understanding are essential for better empirical equations.

  20. Modeling Bimolecular Reactions and Transport in Porous Media Via Particle Tracking

    SciTech Connect

    Dong Ding; David Benson; Amir Paster; Diogo Bolster

    2012-01-01

    We use a particle-tracking method to simulate several one-dimensional bimolecular reactive transport experiments. In this numerical method, the reactants are represented by particles: advection and dispersion dominate the flow, and molecular diffusion dictates, in large part, the reactions. The particle/particle reactions are determined by a combination of two probabilities dictated by the physics of transport and energetics of reaction. The first is that reactant particles occupy the same volume over a short time interval. The second is the conditional probability that two collocated particles favorably transform into a reaction. The first probability is a direct physical representation of the degree of mixing in an advancing displacement front, and as such lacks empirical parameters except for the user-defined number of particles. This number can be determined analytically from concentration autocovariance, if this type of data is available. The simulations compare favorably to two physical experiments. In one, the concentration of product, 1,2-naphthoquinoe-4-aminobenzene (NQAB) from reaction between 1,2-naphthoquinone-4-sulfonic acid (NQS) and aniline (AN), was measured at the outflow of a column filled with glass beads at different times. In the other, the concentration distribution of reactants (CuSO_4 and EDTA^{4-}) and products (CuEDTA^{4-}) were quantified by snapshots of transmitted light through a column packed with cryloite sand. The thermodynamic rate coefficient in the latter experiment was 10^7 times greater than the former experiment, making it essentially instantaneous. When compared to the solution of the advection-dispersion-reaction equation (ADRE) with the well-mixed reaction coefficient, the experiments and the particle-tracking simulations showed on the order of 20% to 40% less overall product, which is attributed to poor mixing. The poor mixing also leads to higher product concentrations on the edges of the mixing zones, which the particle

  1. PARTICLE TRANSPORTATION AND DEPOSITION IN HOT GAS FILTER VESSELS - A COMPUTATIONAL AND EXPERIMENTAL MODELING APPROACH

    SciTech Connect

    Goodarz Ahmadi

    2002-07-01

    In this project, a computational modeling approach for analyzing flow and ash transport and deposition in filter vessels was developed. An Eulerian-Lagrangian formulation for studying hot-gas filtration process was established. The approach uses an Eulerian analysis of gas flows in the filter vessel, and makes use of the Lagrangian trajectory analysis for the particle transport and deposition. Particular attention was given to the Siemens-Westinghouse filter vessel at Power System Development Facility in Wilsonville in Alabama. Details of hot-gas flow in this tangential flow filter vessel are evaluated. The simulation results show that the rapidly rotation flow in the spacing between the shroud and the vessel refractory acts as cyclone that leads to the removal of a large fraction of the larger particles from the gas stream. Several alternate designs for the filter vessel are considered. These include a vessel with a short shroud, a filter vessel with no shroud and a vessel with a deflector plate. The hot-gas flow and particle transport and deposition in various vessels are evaluated. The deposition patterns in various vessels are compared. It is shown that certain filter vessel designs allow for the large particles to remain suspended in the gas stream and to deposit on the filters. The presence of the larger particles in the filter cake leads to lower mechanical strength thus allowing for the back-pulse process to more easily remove the filter cake. A laboratory-scale filter vessel for testing the cold flow condition was designed and fabricated. A laser-based flow visualization technique is used and the gas flow condition in the laboratory-scale vessel was experimental studied. A computer model for the experimental vessel was also developed and the gas flow and particle transport patterns are evaluated.

  2. Particle release transport in Danshuei River estuarine system and adjacent coastal ocean: a modeling assessment.

    PubMed

    Chen, Wei-Bo; Liu, Wen-Cheng; Kimura, Nobuaki; Hsu, Ming-Hsi

    2010-09-01

    A three-dimensional hydrodynamic model was created to study the Danshuei River estuarine system and adjacent coastal ocean in Taiwan. The model was verified using measurements of the time-series water surface elevation, tidal current, and salinity from 1999. We conclude that our model is consistent with these observations. Our particle-tracking model was also used to explore the transport of particles released from the Hsin-Hai Bridge, an area that is heavily polluted. The results suggest that it takes a much longer time for the estuary to be flushed out under low freshwater discharge conditions than with high freshwater discharge. We conclude that the northeast and southwest winds minimally impact particle dispersion in the estuary. The particles fail to settle to the bottom in the absence of density-induced circulation. Our model was also used to simulate the ocean outfall at the Bali. Our experimental results suggest that the tidal current dominates the particle trajectories and influences the transport properties in the absence of a wind stress condition. The particles tend to move northeast or southwest along the coast when northeast or southwest winds prevail. Our data suggest that wind-driven currents and tidal currents play important roles in water movement as linked with ocean outfall in the context of the Danshuei River.

  3. Recent advances in particle methods for simulating solute transport in the subsurface

    NASA Astrophysics Data System (ADS)

    Painter, S.

    2012-12-01

    Particle methods such as random walk particle tracking have a long history as numerical tools for simulating solute transport in the subsurface. In the traditional random walk particle tracking algorithm, particles representing packets of solute mass are moved through the velocity field obtained from a numerical flow solution to simulate advection; random spatial displacements are then added to simulate dispersion. The two well-known advantages of the approach are that it is relatively efficient for large problems and free of numerical dispersion. Recent large-scale applications have prompted the development of novel variants of particle methods that offer additional advantages. Interchanging the role of time and space - that is, sampling a residence time with a fixed displacement instead of a random displacement with a fixed time step - leads to a particularly efficient algorithm that also easily accommodates a very wide range of models for solute diffusion/sorption in immobile regions. Algorithms and computer codes that accommodate fully unstructured grids have recently appeared. In applications that involve significant parameter uncertainty, the Monte Carlo sampling of uncertain parameters may be intermingled with the Monte Carlo solution method, which leads to a particularly efficient estimate of the ensemble mean concentration or breakthrough curve. Methods for post-processing relatively simple particle tracking scenarios to include effects of matrix diffusion/sorption also allow uncertainty to be quantified in an efficient way. These and other recent developments will be reviewed; example applications involving radionuclide transport over long time and space scales will also be presented.

  4. Proper orthogonal decomposition and wavelet methods for noise reduction in particle-based transport calculations

    NASA Astrophysics Data System (ADS)

    Nguyen van Ye, Romain; Del-Castillo-Negrete, Diego; Spong, D.; Hirshman, S.; Farge, M.

    2008-11-01

    A limitation of particle-based transport calculations is the noise due to limited statistical sampling. Thus, a key element for the success of these calculations is the development of efficient denoising methods. Here we discuss denoising techniques based on Proper Orthogonal Decomposition (POD) and Wavelet Decomposition (WD). The goal is the reconstruction of smooth (denoised) particle distribution functions from discrete particle data obtained from Monte Carlo simulations. In 2-D, the POD method is based on low rank truncations of the singular value decomposition of the data. For 3-D we propose the use of a generalized low rank approximation of matrices technique. The WD denoising is based on the thresholding of empirical wavelet coefficients [Donoho et al., 1996]. The methods are illustrated and tested with Monte-Carlo particle simulation data of plasma collisional relaxation including pitch angle and energy scattering. As an application we consider guiding-center transport with collisions in a magnetically confined plasma in toroidal geometry. The proposed noise reduction methods allow to achieve high levels of smoothness in the particle distribution function using significantly less particles in the computations.

  5. Transport and dispersion of fluorescent tracer particles for the dune-bed condition, Atrisco Feeder Canal near Bernalillo, New Mexico

    USGS Publications Warehouse

    Rathbun, R.E.; Kennedy, Vance C.

    1978-01-01

    A fluorescent tracer technique was used to study the rates of transport and dispersion of sediment particles of various diameters and specific gravities for a dune-bed condition in an alluvial channel, Atrisco Feeder Canal near Bernalillo, N. Mex. The total transport rates of bed material measured by the steady-dilution and spatial-integration procedures were within the range of transport rates computed by the modified Einstein procedure. Lateral dispersion of the tracer particles increased with increase in the size of the tracer particles, whereas longitudinal dispersion decreased. The velocities of the tracer particles decreased with increase in the size of the tracer particles; dependence on particle diameter was large for the small particles, small for the large particles. Tracers were found at larger depths in the bed than would be expected on the basis of the sizes of the dunes in the channel. (Woodard-USGS)

  6. Influence of oxide particle network morphology on ion solvation and transport in "soggy sand" electrolytes.

    PubMed

    Das, Shyamal K; Bhattacharyya, Aninda J

    2010-05-27

    The role of oxide surface chemical composition and solvent on ion solvation and ion transport of "soggy sand" electrolytes are discussed here. A "soggy sand" electrolyte system comprising dispersions of hydrophilic/hydrophobic functionalized aerosil silica in lithium perchlorate-methoxy polyethylene glycol solution was employed for the study. Static and dynamic rheology measurements show formation of an attractive particle network in the case of the composite with unmodified aerosil silica (i.e., with surface silanol groups) as well as composites with hydrophobic alkane groups. While particle network in the composite with hydrophilic aerosil silica (unmodified) were due to hydrogen bonding, hydrophobic aerosil silica particles were held together via van der Waals forces. The network strength in the latter case (i.e., for hydrophobic composites) were weaker compared with the composite with unmodified aerosil silica. Both unmodified silica as well as hydrophobic silica composites displayed solid-like mechanical strength. No enhancement in ionic conductivity compared to the liquid electrolyte was observed in the case of the unmodified silica. This was attributed to the existence of a very strong particle network, which led to the "expulsion" of all conducting entities from the interfacial region between adjacent particles. The ionic conductivity for composites with hydrophobic aerosil particles displayed ionic conductivity dependent on the size of the hydrophobic chemical moiety. No spanning attractive particle network was observed for aerosil particles with surfaces modified with stronger hydrophilic groups (than silanol). The composite resembled a sol, and no percolation in ionic conductivity was observed.

  7. Coupling fine particle and bedload transport in gravel-bedded streams

    NASA Astrophysics Data System (ADS)

    Park, Jungsu; Hunt, James R.

    2017-09-01

    Fine particles in the silt- and clay-size range are important determinants of surface water quality. Since fine particle loading rates are not unique functions of stream discharge this limits the utility of the available models for water quality assessment. Data from 38 minimally developed watersheds within the United States Geological Survey stream gauging network in California, USA reveal three lines of evidence that fine particle release is coupled with bedload transport. First, there is a transition in fine particle loading rate as a function of discharge for gravel-bedded sediments that does not appear when the sediment bed is composed of sand, cobbles, boulders, or bedrock. Second, the discharge at the transition in the loading rate is correlated with the initiation of gravel mobilization. Third, high frequency particle concentration and discharge data are dominated by clockwise hysteresis where rising limb discharges generally have higher concentrations than falling limb discharges. These three observations across multiple watersheds lead to a conceptual model that fine particles accumulate within the sediment bed at discharges less than the transition and then the gravel bed fluidizes with fine particle release at discharges above the transition discharge. While these observations were individually recognized in the literature, this analysis provides a consistent conceptual model based on the coupling of fine particle dynamics with filtration at low discharges and gravel bed fluidization at higher discharges.

  8. Particle Transport of 234U- 238U in the Kalix River and in the Baltic Sea

    NASA Astrophysics Data System (ADS)

    Andersson, P. S.; Porcelli, D.; Wasserburg, G. J.; Ingri, J.

    1998-02-01

    The role of particles for U isotope transport was investigated in the Kalix River watershed, a particle-poor, Fe/Mn-rich river in northern Sweden, and in the Baltic Sea estuary. Particles >0.45μm are strongly enriched in U and contain 20-50% of the total riverine uranium budget and <1% of the total U in brackish waters (3-7 PSU). The particles have high δ 234U which is close to that of dissolved U in the associated water, indicating that U on particles is dominantly nondetrital and isotopically exchanges rapidly with the ambient dissolved U. Particles at the river mouth are dominated by nondetrital Fe-Mn oxyhydroxides. Uranium and Fe are strongly correlated, clearly demonstrating that secondary Fe-oxyhydroxide is the major carrier of U in river water. There is no evidence for significant association of U with Mn-oxyhydroxide. Apparent U distribution coefficients ( K̂dFe) were calculated for U between the authigenic Fe on particles and the solution. These values appear to be relatively constant throughout the year. This suggests an equilibrium between Fe in solution and authigenic Fe-oxyhydroxides on detrital particles. High values of K̂dFe calculated for one summer as well as high U concentrations in brackish waters can be explained by U scavenging by biogenic phases with low authigenic Fe content.

  9. Ultrafine particle transport and deposition in a large scale 17-generation lung model.

    PubMed

    Islam, Mohammad S; Saha, Suvash C; Sauret, Emilie; Gemci, Tevfik; Yang, Ian A; Gu, Y T

    2017-09-05

    To understand how to assess optimally the risks of inhaled particles on respiratory health, it is necessary to comprehend the uptake of ultrafine particulate matter by inhalation during the complex transport process through a non-dichotomously bifurcating network of conduit airways. It is evident that the highly toxic ultrafine particles damage the respiratory epithelium in the terminal bronchioles. The wide range of in silico available and the limited realistic model for the extrathoracic region of the lung have improved understanding of the ultrafine particle transport and deposition (TD) in the upper airways. However, comprehensive ultrafine particle TD data for the real and entire lung model are still unavailable in the literature. Therefore, this study is aimed to provide an understanding of the ultrafine particle TD in the terminal bronchioles for the development of future therapeutics. The Euler-Lagrange (E-L) approach and ANSYS fluent (17.2) solver were used to investigate ultrafine particle TD. The physical conditions of sleeping, resting, and light activity were considered in this modelling study. A comprehensive pressure-drop along five selected path lines in different lobes was calculated. The non-linear behaviour of pressure-drops is observed, which could aid the health risk assessment system for patients with respiratory diseases. Numerical results also showed that ultrafine particle-deposition efficiency (DE) in different lobes is different for various physical activities. Moreover, the numerical results showed hot spots in various locations among the different lobes for different flow rates, which could be helpful for targeted therapeutical aerosol transport to terminal bronchioles and the alveolar region. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. Influence of Bentonite Particles on the Transport and Deposition Behavior of Bacteria in Porous Media

    NASA Astrophysics Data System (ADS)

    Yang, Haiyan; Tong, Meiping; Kim, Hyunjung

    2013-04-01

    The influence of clay particles on the transport and deposition behavior of bacteria in irregular quartz sand was examined by direct comparison of both breakthrough curves and retained profiles with clay particles in bacteria suspension versus those without clay particles. Two representative cell types, Gram-negative strain E.coli DH5α and Gram-positive strain Bacillus subtilis were utilized to systematically determine the influence of clay particles (bentonite) on cell transport behavior. Packed column experiments for both cell types were conducted in both NaCl (5 and 25 mM ionic strengths) and CaCl2 (5 mM ionic strength) solutions at pH 6.0. The breakthrough plateaus with bentonite in solutions (30 mg L-1 and 50 mg L-1) were lower than those without bentonite for both cell types under all examined conditions, indicating that bentonite in solutions decreased cell transport in porous media regardless of cell types (Gram-negative or Gram-positive) and solution chemistry (ionic strength and ion valence). The enhanced cell deposition with bentonite particles was mainly observed at segments near to column inlet, retained profiles for both cell types with bentonite particles therefore were steeper relative to those without bentonite. The increased cell deposition with bentonite observed in NaCl solutions was mainly attributed to the co-deposition of bacteria with bentonite particles whereas, in addition to co-deposition of bacteria with bentonite, the bacteria-bentonite-bacteria cluster formed in suspensions also contributed to the increased deposition of bacteria with bentonite in CaCl2 solution.

  11. Plot-scale sediment transport processes on a burned hillslope as a function of particle size

    USGS Publications Warehouse

    Moody, John A.

    2010-01-01

    Soil moisture, rainfall, runoff, and sediment transport data were collected from four 1-m2 hillslope plots after the 2000 Hi Meadow Fire in Colorado. Data were collected daily during three summers, two of which were affected by drought. Maximum 30-minute rainfall intensities, I30, were less than 20 mm h-1 and the average runoff volumes per plot were less than 4.7 L per storm. The data were separated into three sediment transport processes based on rainfall intensity and runoff magnitude: (1) dry ravel, (2) rainsplash, and (3) rainflow and then into eight different particle size classes (Di). For each class, dry ravel transport had a non-linear dependence on initial soil moisture, θi, with a maximum at intermediate values of θi (5-9 % cm3 cm-3). Dry ravel transport rates were small for low θi , which may be caused by a cementation process, and also small for high θi , which may be caused by increased surface tension. Rainsplash transport was confined to the I30 domain from 1-7 mm h-1 was proportional to Di(Imax30)0.63. Rainflow transport (I30 > 7 mm h-1) in shallow flows (h < 2 mm) was most likely dominated by particles rolling. It had a non-linear dependence on Di with maximum transport of sediment in the 2-4 mm size class. Transport also depended on stream power, but critical stream power was essentially zero, which may indicate that the rainsplash preceding runoff detached soil for transport by overland flow.

  12. Purification of IFT particle proteins and preparation of recombinant proteins for structural and functional analysis.

    PubMed

    Behal, Robert H; Betleja, Ewelina; Cole, Douglas G

    2009-01-01

    Intraflagellar transport (IFT) is characterized by a robust bidirectional movement of large proteinaceous particles along the length of eukaryotic cilia and flagella. Essential for the assembly and function of the organelle, IFT is believed to transport a large array of ciliary components in and out of the organelle. Biochemical analysis of the proteins involved with this transport has been largely dependent on the ability to isolate suitable quantities of intact cilia or flagella. One model organism, Chlamydomonas reinhardtii, has proven to be especially well-suited for such endeavors. Indeed, many of the IFT particle proteins were initially identified through biochemical analysis of green algae. This chapter describes some of the most effective methods for the purification of IFT particle proteins from Chlamydomonas flagella. This chapter also describes complementary approaches where recombinant IFT proteins are generated with affinity tags that allow rapid and specific purification. The recombinant proteins can be used to analyze protein-protein interactions and can be directly delivered to mutant cells to analyze functional domains. Although the techniques described here are focused entirely on Chlamydomonas IFT proteins, the approaches, especially regarding recombinant proteins, should be applicable to the study of IFT machinery in other model organisms.

  13. Effect of natural particles on the transport of lindane in saturated porous media: Laboratory experiments and model-based analysis

    NASA Astrophysics Data System (ADS)

    Ngueleu, Stéphane K.; Grathwohl, Peter; Cirpka, Olaf A.

    2013-06-01

    Colloidal particles can act as carriers for adsorbing pollutants, such as hydrophobic organic pollutants, and enhance their mobility in the subsurface. In this study, we investigate the influence of colloidal particles on the transport of pesticides through saturated porous media by column experiments. We also investigate the effect of particle size on this transport. The model pesticide is lindane (gamma-hexachlorocyclohexane), a representative hydrophobic insecticide which has been banned in 2009 but is still used in many developing countries. The breakthrough curves are analyzed with the help of numerical modeling, in which we examine the minimum model complexity needed to simulate such transport. The transport of lindane without particles can be described by advective-dispersive transport coupled to linear three-site sorption, one site being in local equilibrium and the others undergoing first-order kinetic sorption. In the presence of mobile particles, the total concentration of mobile lindane is increased, that is, lindane is transported not only in aqueous solution but also sorbed onto the smallest, mobile particles. The models developed to simulate separate and associated transport of lindane and the particles reproduced the measurements very well and showed that the adsorption/desorption of lindane to the particles could be expressed by a common first-order rate law, regardless whether the particles are mobile, attached, or strained.

  14. Transport and crystallization of colloidal particles in a thin nematic cell

    NASA Astrophysics Data System (ADS)

    Karabot, M. Å.; Tkalec, U.; Muševič, I.

    2007-09-01

    In a thin planar nematic cell, the application of an AC electric field induces a macroscopic transport of micrometer-sized colloidal particles along the nematic director. We have analyzed the dependence of particle velocities on the electric-field amplitude and frequency and found that it decreases exponentially with increasing frequency. Using specially designed electrodes we have observed that colloidal particles could be pumped and accelerated across the field-no-field interface, and measured the structural force and the corresponding potential, which is of the order of 10000 kBT for 4μm particles. We demonstrate that spatially periodic close-packed crystalline colloidal structures can be obtained, which are thermodinamically metastable for many days after turning off the electric field and slowly decay into linear chains. Above the nematic-isotropic phase transition, such crystalline structures are non-stable and decay in few minutes.

  15. A Lagrangian particle method with remeshing for tracer transport on the sphere

    NASA Astrophysics Data System (ADS)

    Bosler, Peter A.; Kent, James; Krasny, Robert; Jablonowski, Christiane

    2017-07-01

    A Lagrangian particle method (called LPM) based on the flow map is presented for tracer transport on the sphere. The particles carry tracer values and are located at the centers and vertices of triangular Lagrangian panels. Remeshing is applied to control particle disorder and two schemes are compared, one using direct tracer interpolation and another using inverse flow map interpolation with sampling of the initial tracer density. Test cases include a moving-vortices flow and reversing-deformational flow with both zero and nonzero divergence, as well as smooth and discontinuous tracers. We examine the accuracy of the computed tracer density and tracer integral, and preservation of nonlinear correlation in a pair of tracers. We compare results obtained using LPM and the Lin-Rood finite-volume scheme. An adaptive particle/panel refinement scheme is demonstrated.

  16. A Lagrangian particle method with remeshing for tracer transport on the sphere

    DOE PAGES

    Bosler, Peter Andrew; Kent, James; Krasny, Robert; ...

    2017-03-30

    A Lagrangian particle method (called LPM) based on the flow map is presented for tracer transport on the sphere. The particles carry tracer values and are located at the centers and vertices of triangular Lagrangian panels. Remeshing is applied to control particle disorder and two schemes are compared, one using direct tracer interpolation and another using inverse flow map interpolation with sampling of the initial tracer density. Test cases include a moving-vortices flow and reversing-deformational flow with both zero and nonzero divergence, as well as smooth and discontinuous tracers. We examine the accuracy of the computed tracer density and tracermore » integral, and preservation of nonlinear correlation in a pair of tracers. Here, we compare results obtained using LPM and the Lin–Rood finite-volume scheme. An adaptive particle/panel refinement scheme is demonstrated.« less

  17. Control of transport and distribution of dust particles via Electrical Asymmetry Effect

    NASA Astrophysics Data System (ADS)

    Iwashita, Shinya; Uchida, Giichiro; Schulze, Julian; Schuengel, Edmund; Hartmann, Peter; Shiratani, Masaharu; Donko, Zoltan; Czarnetzki, Uwe

    2011-10-01

    We are developing a novel method to manipulate particles in capacitively coupled rf discharges via the Electrical Asymmetry Effect, which allows to control both the spatial potential profile as well as the ion density distribution by adjusting the phase angle θ between a fundamental frequency and its second harmonic. We report first experimental results of this method using SiO2 particles of around 1 μm in size, which are inserted into an argon discharge operated at low pressures. By changing θ from 0 to 90 degree particles are transported rapidly from the plasma-sheath region around the lower powered electrode to that around the upper grounded electrode. The spatial distribution of forces exerted on particles, such as ion drag and electrostatic forces, will be discussed based on PIC simulation results. Funding: German Federal Ministry for the Environment (0325210B), Alexander von Humboldt Foundation, RUB Research Department Plasma, Hungarian Scientific Research Fund (OTKA-K-77653+IN-85261)

  18. Modeling particle-facilitated solute transport using the C-Ride module of HYDRUS

    NASA Astrophysics Data System (ADS)

    Simunek, Jiri; Bradford, Scott A.

    2017-04-01

    Strongly sorbing chemicals (e.g., heavy metals, radionuclides, pharmaceuticals, and/or explosives) in soils are associated predominantly with the solid phase, which is commonly assumed to be stationary. However, recent field- and laboratory-scale observations have shown that, in the presence of mobile colloidal particles (e.g., microbes, humic substances, clays and metal oxides), the colloids could act as pollutant carriers and thus provide a rapid transport pathway for strongly sorbing contaminants. Such transport can be further accelerated since these colloidal particles may travel through interconnected larger pores where the water velocity is relatively high. Additionally, colloidal particles have a considerable adsorption capacity for other species present in water because of their large specific surface areas and their high concentrations in soil-water and groundwater. As a result, the transport of contaminants can be significantly, sometimes dramatically, enhanced when they are adsorbed to mobile colloids. To address this problem, we have developed the C-Ride module for HYDRUS-1D. This one-dimensional numerical module is based on the HYDRUS-1D software package and incorporates mechanisms associated with colloid and colloid-facilitated solute transport in variably saturated porous media. This numerical model accounts for both colloid and solute movement due to convection, diffusion, and dispersion in variably-saturated soils, as well as for solute movement facilitated by colloid transport. The colloids transport module additionally considers processes of attachment/detachment to/from the solid phase, straining, and/or size exclusion. Various blocking and depth dependent functions can be used to modify the attachment and straining coefficients. The module additionally considers the effects of changes in the water content on colloid/bacteria transport and attachment/detachment to/from solid-water and air-water interfaces. For example, when the air

  19. Simulations of Lateral Transport and Dropout Structure of Energetic Particles from Impulsive Solar Flares

    NASA Astrophysics Data System (ADS)

    Matthaeus, W. H.; Ruffolo, D. J.; Tooprakai, P.; Seripienlert, A.; Chuychai, P.

    2016-12-01

    We simulate trajectories of energetic particles from impulsive solar flares for 2D+slab models of magnetic turbulence in spherical geometry to study dropout features, i.e., sharp, repeated changes in the particle density, and the particles' lateral transport. Among random-phase realizations of 2D turbulence, a spherical harmonic expansion can generate homogeneous turbulence over a sphere, but a 2D fast Fourier transform (FFT) locally mapped onto the lateral coordinates in the region of interest is much faster computationally, and we show that the results are qualitatively similar. We then use the 2D FFT field as input to a 2D MHD simulation, which dynamically generates realistic features of turbulence such as coherent structures. The magnetic field lines and particles spread non-diffusively (ballistically) to a patchy distribution reaching up to 25° from the injection longitude and latitude at r 1 AU. This dropout pattern in field line trajectories has sharper features in the case of the more realistic 2D MHD model, in better qualitative agreement with observations. The initial dropout pattern in particle trajectories is relatively insensitive to particle energy, though the energy affects the pattern's evolution with time. We make predictions for future observations of solar particles near the Sun (e.g., at 0.25 AU), for which we expect a sharp pulse of outgoing particles along the dropout pattern, followed by backscattering that first remains close to the dropout pattern and later exhibits cross-field transport to a distribution that is more diffusive, yet mostly contained within the dropout pattern found at greater distances. Partially supported by the Thailand Research Fund (Grants BRG5880009 and RTA5980003), the U.S. NSF (AGS-1063439), NASA (NNX14AI63G & NNX15AB88G), and the Solar Probe Plus/ISIS project.

  20. Particle Deformation and Concentration Polarization in Electroosmotic Transport of Hydrogels through Pores

    SciTech Connect

    Vlassiouk, Ivan V

    2013-01-01

    In this article, we report detection of deformable, hydrogel particles by the resistive-pulse technique using single pores in a polymer film. The hydrogels pass through the pores by electroosmosis and cause formation of a characteristic shape of resistive pulses indicating the particles underwent dehydration and deformation. These effects were explained via a non-homogeneous pressure distribution along the pore axis modeled by the coupled Poisson-Nernst-Planck and Navier Stokes equations. The local pressure drops are induced by the electroosmotic fluid flow. Our experiments also revealed the importance of concentration polarization in the detection of hydrogels. Due to the negative charges as well as branched, low density structure of the hydrogel particles, concentration of ions in the particles is significantly higher than in the bulk. As a result, when electric field is applied across the membrane, a depletion zone can be created in the vicinity of the particle observed as a transient drop of the current. Our experiments using pores with openings between 200 and 1600 nm indicated the concentration polarization dominated the hydrogels detection for pores wider than 450 nm. The results are of importance for all studies that involve transport of molecules, particles and cells through pores with charged walls. The developed inhomogeneous pressure distribution can potentially influence the shape of the transported species. The concentration polarization changes the interpretation of the resistive pulses; the observed current change does not necessarily reflect only the particle size but also the size of the depletion zone that is formed in the particle vicinity.

  1. Transport of TMV movement protein particles associated with the targeting of RNA to plasmodesmata.

    PubMed

    Sambade, Adrian; Brandner, Katrin; Hofmann, Christina; Seemanpillai, Mark; Mutterer, Jerome; Heinlein, Manfred

    2008-12-01

    The cell-to-cell movement of Tobacco mosaic virus through plasmodesmata (PD) requires virus-encoded movement protein (MP). The MP targets PD through the endoplasmic reticulum (ER)/actin network, whereas the intercellular movement of the viral RNA genome has been correlated with the association of the MP with mobile, microtubule-proximal particles in cells at the leading front of infection as well as the accumulation of the protein on the microtubule network during later infection stages. To understand how the associations of MP with ER and microtubules are functionally connected, we applied multiple marker three-dimensional confocal and time-lapse video microscopies to Nicotiana benthamiana cells expressing fluorescent MP, fluorescent RNA and fluorescent cellular markers. We report the reconstitution of MP-dependent RNA transport to PD in a transient assay. We show that transiently expressed MP occurs in association with small particles as observed during infection. The same MP accumulates in PD and mediates the transport of its messenger RNA transcript to the pore. In the cellular cortex, the particles occur at microtubule-proximal sites and can undergo ER-associated and latrunculin-sensitive movements between such sites. These and other observations suggest that the microtubule network performs anchorage and release functions for controlling the assembly and intracellular movement of MP-containing RNA transport particles in association with the ER.

  2. Turbulent particle transport in streams: can exponential settling be reconciled with fluid mechanics?

    PubMed

    McNair, James N; Newbold, J Denis

    2012-05-07

    Most ecological studies of particle transport in streams that focus on fine particulate organic matter or benthic invertebrates use the Exponential Settling Model (ESM) to characterize the longitudinal pattern of particle settling on the bed. The ESM predicts that if particles are released into a stream, the proportion that have not yet settled will decline exponentially with transport time or distance and will be independent of the release elevation above the bed. To date, no credible basis in fluid mechanics has been established for this model, nor has it been rigorously tested against more-mechanistic alternative models. One alternative is the Local Exchange Model (LEM), which is a stochastic advection-diffusion model that includes both longitudinal and vertical spatial dimensions and is based on classical fluid mechanics. The LEM predicts that particle settling will be non-exponential in the near field but will become exponential in the far field, providing a new theoretical justification for far-field exponential settling that is based on plausible fluid mechanics. We review properties of the ESM and LEM and compare these with available empirical evidence. Most evidence supports the prediction of both models that settling will be exponential in the far field but contradicts the ESM's prediction that a single exponential distribution will hold for all transport times and distances.

  3. Modeling Coupled Particle/Fluid/Thermal/Charge/Ion Transport with a Hybrid Lattice Boltzmann and Immersed Boundary Method

    NASA Astrophysics Data System (ADS)

    Wang, Miao; Sun, Ying

    2011-11-01

    A hybrid model based on lattice Boltzmann method and immersed boundary method is developed to simulate complex transport processes in semi-solid flow batteries, where electrode slurries are composite of both electrolyte and electrode particles flowing through an electrochemical reaction zone. In such a case, the coupled charge and ion transport need to be solved in a moving frame of reference, accounting for the motion of electrode particles. The model is first validated by studying the sedimentation of non-isothermal particles in a fluid domain, where the hydrodynamic forces are determined by the lattice Boltzmann equation and the immersed boundary method is used to solve for heat transfer. The hybrid model is then applied to solving for the species and ion transport in both the electrolyte and electrode particles inside semi-solid electrode slurries. The charge/ion transport properties as a function of particle volume fraction and particle size of the electrode material are presented.

  4. Atmospheric occurrence, transport and gas-particle partitioning of polychlorinated biphenyls over the northwestern Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Wu, Zilan; Lin, Tian; Li, Zhongxia; Li, Yuanyuan; Guo, Tianfeng; Guo, Zhigang

    2017-10-01

    Ship-board air samples were collected during March to May 2015 from the East China Sea (ECS) to the northwestern Pacific Ocean (NWP) to explore the atmospheric occurrence and gas-particle partitioning of polychlorinated biphenyls (PCBs) when the westerly East Asian Monsoon prevailed. Total PCB concentrations in the atmosphere ranged from 56.8 to 261 pg m-3. Higher PCB levels were observed off the coast and minor temperature-induced changes showed that continuous emissions from East Asia remain as an important source to the regional atmosphere. A significant relationship between Koa (octanol-air partition coefficient) and KP (gas-particle partition coefficient) for PCBs was observed under continental air masses, suggesting that land-derived organic aerosols affected the PCB gas-particle partitioning after long-range transport, while an absence of this correlation was identified in marine air masses. The PCB partitioning cannot be fully explained by the absorptive mechanism as the predicted KP were found to be 2-3 orders of magnitude lower than the measured Kp, while the prediction was closely matched when soot adsorption was considered. The results suggested the importance of soot carbon as a transport medium for PCBs during their long-range transport and considerable impacts of continental outflows on PCBs across the downwind area. The estimated transport mass of particulate PCBs into the ECS and NWP totals 2333 kg during the spring, constituting ca. 17% of annual emission inventories of unintentionally produced PCB in China.

  5. Robustness and flexibility in compact quasiaxial stellarators: Global ideal MHD stability and energetic particle transport

    SciTech Connect

    Redi, M.H.; Diallo, A.; Cooper, W.A.; Fu, G.Y.

    2000-01-27

    Concerns about the flexibility and robustness of a compact quasiaxial stellarator design are addressed by studying the effects of varied pressure and rotational transform profiles on expected performance. For thirty, related, fully three-dimensional configurations the global, ideal magnetohydrodynamic stability is evaluated as well as energetic particle transport. It is found that tokamak intuition is relevant to understanding the magnetohydrodynamic stability, with pressure gradient driving terms and shear stabilization controlling both the periodicity preserving, N=0, and the non-periodicity preserving, N=1, unstable kink modes. Global kink modes are generated by steeply peaked pressure profiles near the half radius and edge localized kink modes are found for plasmas with steep pressure profiles at the edge as well as with edge rotational transform above 0.5. Energetic particle transport is not strongly dependent on these changes of pressure and current (or rotational transform) profiles, although a weak inverse dependence on pressure peaking through the corresponding Shafranov shift is found. While good transport and MHD stability are not anticorrelated in these equilibria, stability only results from a delicate balance of the pressure and shear stabilization forces. A range of interesting MHD behaviors is found for this large set of equilibria, exhibiting similar particle transport properties.

  6. Bacterial Composition and Survival on Sahara Dust Particles Transported to the European Alps

    PubMed Central

    Meola, Marco; Lazzaro, Anna; Zeyer, Josef

    2015-01-01

    Deposition of Sahara dust (SD) particles is a frequent phenomenon in Europe, but little is known about the viability and composition of the bacterial community transported with SD. The goal of this study was to characterize SD-associated bacteria transported to the European Alps, deposited and entrapped in snow. During two distinct events in February and May 2014, SD particles were deposited and promptly covered by falling snow, thus preserving them in distinct ochre layers within the snowpack. In June 2014, we collected samples at different depths from a snow profile at the Jungfraujoch (Swiss Alps; 3621 m a.s.l.). After filtration, we performed various microbiological and physicochemical analyses of the snow and dust particles therein that originated in Algeria. Our results show that bacteria survive and are metabolically active after the transport to the European Alps. Using high throughput sequencing, we observed distinct differences in bacterial community composition and structure in SD-layers as compared to clean snow layers. Sporulating bacteria were not enriched in the SD-layers; however, phyla with low abundance such as Gemmatimonadetes and Deinococcus-Thermus appeared to be specific bio-indicators for SD. Since many members of these phyla are known to be adapted to arid oligotrophic environments and UV radiation, they are well suited to survive the harsh conditions of long-range airborne transport. PMID:26733988

  7. Silver (Ag) Transport Mechanisms in TRISO coated particles: A Critical Review

    SciTech Connect

    I J van Rooyen; J H Neethling; J A A Engelbrecht; P M van Rooyen; G Strydom

    2012-10-01

    Transport of 110mAg in the intact SiC layer of TRISO coated particles has been studied for approximately 30 years without arriving at a satisfactory explanation of the transport mechanism. In this paper the possible mechanisms postulated in previous experimental studies, both in-reactor and out-of reactor research environment studies are critically reviewed and of particular interest are relevance to very high temperature gas reactor operating and accident conditions. Among the factors thought to influence Ag transport are grain boundary stoichiometry, SiC grain size and shape, the presence of free silicon, nano-cracks, thermal decomposition, palladium attack, transmutation products, layer thinning and coated particle shape. Additionally new insight to nature and location of fission products has been gained via recent post irradiation electron microscopy examination of TRISO coated particles from the DOE’s fuel development program. The combined effect of critical review and new analyses indicates a direction for investigating possible the Ag transport mechanism including the confidence level with which these mechanisms may be experimentally verified.

  8. The Roles of Transport and Wave-Particle Interactions on Radiation Belt Dynamics

    NASA Technical Reports Server (NTRS)

    Fok, Mei-Ching; Glocer, Alex; Zheng, Qiuhua

    2011-01-01

    Particle fluxes in the radiation belts can vary dramatically during geomagnetic active periods. Transport and wave-particle interactions are believed to be the two main types of mechanisms that control the radiation belt dynamics. Major transport processes include substorm dipolarization and injection, radial diffusion, convection, adiabatic acceleration and deceleration, and magnetopause shadowing. Energetic electrons and ions are also subjected to pitch-angle and energy diffusion when interact with plasma waves in the radiation belts. Important wave modes include whistler mode chorus waves, plasmaspheric hiss, electromagnetic ion cyclotron waves, and magnetosonic waves. We investigate the relative roles of transport and wave associated processes in radiation belt variations. Energetic electron fluxes during several storms are simulated using our Radiation Belt Environment (RBE) model. The model includes important transport and wave processes such as substorm dipolarization in global MHD fields, chorus waves, and plasmaspheric hiss. We discuss the effects of these competing processes at different phases of the storms and validate the results by comparison with satellite and ground-based observations. Keywords: Radiation Belts, Space Weather, Wave-Particle Interaction, Storm and Substorm

  9. Silver (Ag) Transport Mechanisms in TRISO Coated Particles: A Critical Review

    SciTech Connect

    IJ van Rooyen; ML Dunzik-Gougar; PM van Rooyen

    2014-05-01

    Transport of 110mAg in the intact SiC layer of TRISO coated particles has been studied for approximately 30 years without arriving at a satisfactory explanation of the transport mechanism. In this paper the possible mechanisms postulated in previous experimental studies, both in-reactor and out-of reactor research environment studies are critically reviewed and of particular interest are relevance to very high temperature gas reactor operating and accident conditions. Among the factors thought to influence Ag transport are grain boundary stoichiometry, SiC grain size and shape, the presence of free silicon, nano-cracks, thermal decomposition, palladium attack, transmutation products, layer thinning and coated particle shape. Additionally new insight to nature and location of fission products has been gained via recent post irradiation electron microscopy examination of TRISO coated particles from the DOE’s fuel development program. The combined effect of critical review and new analyses indicates a direction for investigating possible the Ag transport mechanism including the confidence level with which these mechanisms may be experimentally verified.

  10. Collection and analysis of colloidal particles transported in the Mississippi River, U.S.A.

    USGS Publications Warehouse

    Rees, T.F.; Ranville, J.F.

    1990-01-01

    Sediment transport has long been recognized as an important mechanism for the transport of contaminants in surface waters. Suspended sediment has traditionally been divided into three size classes: sand-sized (>63 ??m), silt-sized ( 63 ??m), silt-sized (< 63 ??m but settleable) and clay-sized (non-settleable). The first two classes are easily collected and characterized using screens (sand) and settling (silt). The clay-sized particles, more properly called colloids, are more difficult to collect and characterize, and until recently received little attention. From the hydrologic perspective, a colloid is a particle, droplet, or gas bubble with at least one dimension between 0.001 and 1 ??m. Because of their small size, colloids have large specific surface areas and high surface free energies which may facilitate sorption of hydrophobic materials. Understanding what types of colloids are present in a system, how contaminants of interest interact with these colloids, and what parameters control the transport of colloids in natural systems is critical if the relative importance of colloid-mediated transport is to be understood. This paper describes the collection, concentration and characterization of colloidal materials in the Mississippi River. Colloid concentrations, particle-size distributions, mineral composition and electrophoretic mobilities were determined. Techniques used are illustrated with samples collected at St. Louis, Missouri, U.S.A.

  11. PHITS-2.76, Particle and Heavy Ion Transport code System

    SciTech Connect

    2015-08-01

    Version 03 PHITS can deal with the transport of almost all particles (nucleons, nuclei, mesons, photons, and electrons) over wide energy ranges, using several nuclear reaction models and nuclear data libraries. Geometrical configuration of the simulation can be set with GG (General Geometry) or CG (Combinatorial Geometry). Various quantities such as heat deposition, track length and production yields can be deduced from the simulation, using implemented estimator functions called "tally". The code also has a function to draw 2D and 3D figures of the calculated results as well as the setup geometries, using a code ANGEL. The physical processes included in PHITS can be divided into two categories, transport process and collision process. In the transport process, PHITS can simulate motion of particles under external fields such as magnetic and gravity. Without the external fields, neutral particles move along a straight trajectory with constant energy up to the next collision point. However, charge particles interact many times with electrons in the material losing energy and changing direction. PHITS treats ionization processes not as collision but as a transport process, using the continuous-slowing-down approximation. The average stopping power is given by the charge density of the material and the momentum of the particle taking into account the fluctuations of the energy loss and the angular deviation. In the collision process, PHITS can simulate the elastic and inelastic interactions as well as decay of particles. The total reaction cross section, or the life time of the particle is an essential quantity in the determination of the mean free path of the transport particle. According to the mean free path, PHITS chooses the next collision point using the Monte Carlo method. To generate the secondary particles of the collision, we need the information of the final states of the collision. For neutron induced reactions in low energy region, PHITS employs the cross

  12. Studies of HZE particle interactions and transport for space radiation protection purposes

    NASA Technical Reports Server (NTRS)

    Townsend, Lawrence W.; Wilson, John W.; Schimmerling, Walter; Wong, Mervyn

    1987-01-01

    The main emphasis is on developing general methods for accurately predicting high-energy heavy ion (HZE) particle interactions and transport for use by researchers in mission planning studies, in evaluating astronaut self-shielding factors, and in spacecraft shield design and optimization studies. The two research tasks are: (1) to develop computationally fast and accurate solutions to the Boltzmann (transport) equation; and (2) to develop accurate HZE interaction models, from fundamental physical considerations, for use as inputs into these transport codes. Accurate solutions to the HZE transport problem have been formulated through a combination of analytical and numerical techniques. In addition, theoretical models for the input interaction parameters are under development: stopping powers, nuclear absorption cross sections, and fragmentation parameters.

  13. Studies of HZE particle interactions and transport for space radiation protection purposes

    SciTech Connect

    Townsend, L.W.; Wilson, J.W.; Schimmerling, W.; Wong, M.

    1987-01-01

    The main emphasis is on developing general methods for accurately predicting high-energy heavy ion (HZE) particle interactions and transport for use by researchers in mission planning studies, in evaluating astronaut self-shielding factors, and in spacecraft shield design and optimization studies. The two research tasks are: (1) to develop computationally fast and accurate solutions to the Boltzmann (transport) equation; and (2) to develop accurate HZE interaction models, from fundamental physical considerations, for use as inputs into these transport codes. Accurate solutions to the HZE transport problem have been formulated through a combination of analytical and numerical techniques. In addition, theoretical models for the input interaction parameters are under development: stopping powers, nuclear absorption cross sections, and fragmentation parameters.

  14. Transport and deposition of pharmaceutical particles in three commercial spacer-MDI combinations.

    PubMed

    Yazdani, A; Normandie, M; Yousefi, M; Saidi, M S; Ahmadi, G

    2014-11-01

    Respiratory drug delivery has been under the research spotlight for the past few decades, mainly due to the high incidence of pulmonary diseases and the fact that this type of delivery offers the highest efficiency for treatment. Despite its invaluable benefits, there are some major drawbacks to respiratory drug delivery, the most important of which being poor delivery efficiency and relatively high drug deposition in undesirable regions, such as the mouth cavity. One way to improve the efficiency of respiratory drug delivery with metered-dose inhalers is placing a respiratory spacer between the inhaler exit and the mouth. It is argued that high drug deposition in the immediate airways of the respiratory system is strongly affected by relatively high initial momentum of pharmaceutical particles leaving the inhaler. A respiratory spacer, however, can provide an expansion region in which the initial momentum of particles can subside. As a result, particles enter the patient׳s oral cavity more gradually and are more likely to reach the desired regions. In this study, the effectiveness of using three commercial spacers paired with a commercial inhaler is examined through numerical investigation of fluid flow and particle transport phenomena. Particles ranging from 1 to 50 µm in diameter are tracked using a Lagrangian point of view and fluid flow fields are resolved using the LRN k-ω turbulence model. A novel particle injection method is introduced and is demonstrated to be able to adequately capture the effects of particle initial momentum. Lastly, a few design suggestions are made.

  15. Fast transport in phase space due to nonlinear wave-particle interaction in the radiation belts.

    NASA Astrophysics Data System (ADS)

    Artemyev, Anton; Vasiliev, Alexii; Mourenas, Didier; Agapitov, Oleksiy; Krasnoselskikh, Vladimir; Boscher, Daniel; Rolland, Guy

    2014-05-01

    We present an analytical, simplified formulation accounting for the fast transport of particles in phase space, in the presence of nonlinear wave-particle resonant interactions in an inhomogeneous magnetic field representative of the radiation belts. We show that the general approach for the description of the evolution of the particle velocity distribution based on the Fokker-Plank equation can be modified to consider the process of nonlinear wave-particle interaction, including particle trapping. Such a modification consists in one additional operator describing fast particle jumps in phase space. The proposed approach is illustrated by considering the acceleration of relativistic electrons by strongly oblique whistler waves. We determine the typical variation of electron phase-density due to nonlinear wave-particle interaction and compare this variation with pitch-angle/energy diffusion due to quasi-linear electron scattering. We show that relation between nonlinear and quasi-linear effects is controlled by the distribution of wave-amplitudes. When this distribution has a heavy tail, nonlinear effects can become dominant in the formation of the electron energy distribution.

  16. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1993-03-01

    Local thermal particle and energy transport studies of balanced-injection L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power have been performed on TFTR. The particle transport of He[sup 2+] and electrons following a small helium gas puff and Fe[sup 24+] induced by laser ablation has been examined and compared to the local energy transport characteristics inferred from power balance analysis. All particle perturbation diffusivities are radially hollow and are similar in magnitude and shape to the effective thermal conductivities found by power balance analysis. All particle diffusivities are 1--2 orders of magnitude larger than neoclassical values, except near the magnetic axis. A reduction in the helium diffusivity D[sub He] in the Supershot as compared to the L-mode is accompanied by a similar reduction in the effective single fluid thermal conductivity [chi]fluid. Also, the helium core convective velocity V[sub He] is found to increase in the Supershot over the L-Mode for r/a < 0.5. A quasilinear model of electrostatic drift waves has been used to calculate ratios between particle and energy fluxes in the Supershot. The measured ratios of the helium and iron particle diffusivities are in good accord with predictions, as are predicted ratios of V[sub He]/D[sub He]. Modelling indicates that the similarity in magnitude and profile shape of D[sub He] and [chi]fluid has generally favorable implications for helium ash content in a future fusion reactor. The core convection found in the Supershot increases the helium concentration on axis but does not reduce the plasma reactivity significantly.

  17. Particle and energy transport studies on TFTR and implications for helium ash in future fusion devices

    SciTech Connect

    Synakowski, E.J.; Efthimion, P.C.; Rewoldt, G.; Stratton, B.C.; Tang, W.M.; Bell, R.E.; Grek, B.; Hulse, R.A.; Johnson, D.W.; Hill, K.W.; Mansfield, D.K.; McCune, D.; Mikkelsen, D.R.; Park, H.K.; Ramsey, A.T.; Scott, S.D.; Taylor, G.; Timberlake, J.; Zarnstorff, M.C.

    1993-03-01

    Local thermal particle and energy transport studies of balanced-injection L-mode and Supershot deuterium plasmas with the same toroidal field, plasma current, and neutral beam heating power have been performed on TFTR. The particle transport of He{sup 2+} and electrons following a small helium gas puff and Fe{sup 24+} induced by laser ablation has been examined and compared to the local energy transport characteristics inferred from power balance analysis. All particle perturbation diffusivities are radially hollow and are similar in magnitude and shape to the effective thermal conductivities found by power balance analysis. All particle diffusivities are 1--2 orders of magnitude larger than neoclassical values, except near the magnetic axis. A reduction in the helium diffusivity D{sub He} in the Supershot as compared to the L-mode is accompanied by a similar reduction in the effective single fluid thermal conductivity {chi}fluid. Also, the helium core convective velocity V{sub He} is found to increase in the Supershot over the L-Mode for r/a < 0.5. A quasilinear model of electrostatic drift waves has been used to calculate ratios between particle and energy fluxes in the Supershot. The measured ratios of the helium and iron particle diffusivities are in good accord with predictions, as are predicted ratios of V{sub He}/D{sub He}. Modelling indicates that the similarity in magnitude and profile shape of D{sub He} and {chi}fluid has generally favorable implications for helium ash content in a future fusion reactor. The core convection found in the Supershot increases the helium concentration on axis but does not reduce the plasma reactivity significantly.

  18. Percolation and particle transport in the unsaturated zone of a karst aquifer.

    PubMed

    Pronk, Michiel; Goldscheider, Nico; Zopfi, Jakob; Zwahlen, Francxois

    2009-01-01

    Recharge and contamination of karst aquifers often occur via the unsaturated zone, but the functioning of this zone has not yet been fully understood. Therefore, irrigation and tracer experiments, along with monitoring of rainfall events, were used to examine water percolation and the transport of solutes, particles, and fecal bacteria between the land surface and a water outlet into a shallow cave. Monitored parameters included discharge, electrical conductivity, temperature, organic carbon, turbidity, particle-size distribution (PSD), fecal indicator bacteria, chloride, bromide, and uranine. Percolation following rainfall or irrigation can be subdivided into a lag phase (no response at the outlet), a piston-flow phase (release of epikarst storage water by pressure transfer), and a mixed-flow phase (increasing contribution of freshly infiltrated water), starting between 20 min and a few hours after the start of recharge event. Concerning particle and bacteria transport, results demonstrate that (1) a first turbidity signal occurs during increasing discharge due to remobilization of particles from fractures (pulse-through turbidity); (2) a second turbidity signal is caused by direct particle transfer from the soil (flow-through turbidity), often accompanied by high levels of fecal indicator bacteria, up to 17,000 Escherichia coli/100 mL; and (3) PSD allows differentiation between the two types of turbidity. A relative increase of fine particles (0.9 to 1.5 microm) coincides with microbial contamination. These findings help quantify water storage and percolation in the epikarst and better understand contaminant transport and attenuation. The use of PSD as "early-warning parameter" for microbial contamination in karst water is confirmed.

  19. Modeling of Particle Acceleration and Transport in Gradual SEP Events Using the PATH Model

    NASA Astrophysics Data System (ADS)

    Verkhoglyadova, O.; Li, G.; Zank, G.; Hu, Q.

    2007-12-01

    We discuss Particle Acceleration and Transport in the Heliosphere (PATH) numerical model developed at University of California at Riverside and present current progress on modeling of energetic particle acceleration at a traveling quasi-parallel CME-driven shock. We initiate the code by modeling a quiet-time solar wind background and then follow the propagation and evolution of an MHD shock from a distance of ~0.1 AU to the Earth's orbit. The model utilizes the solar wind parameters measured in situ by ACE. A semi-analytical approach is applied to simulate particle acceleration at the shock by injecting solar wind suprathermal ions locally. The diffusive shock acceleration mechanism due to the ion scattering by Alfvenic turbulence in the vicinity of the shock is adopted in the code. Monte-Carlo approach is used to follow transport of the energetic particles after they escape from the shock. The output of the PATH model includes time-dependent energetic particle fluxes, spectra and compositional ratios (Fe/O) for proton and heavy ions. We model specific SEP events and compare our modeling results with ACE measurements.

  20. Advances and future needs in particle production and transport code developments

    SciTech Connect

    Mokhov, N.V.; /Fermilab

    2009-12-01

    The next generation of accelerators and ever expanding needs of existing accelerators demand new developments and additions to Monte-Carlo codes, with an emphasis on enhanced modeling of elementary particle and heavy-ion interactions and transport. Challenges arise from extremely high beam energies and beam power, increasing complexity of accelerators and experimental setups, as well as design, engineering and performance constraints. All these put unprecedented requirements on the accuracy of particle production predictions, the capability and reliability of the codes used in planning new accelerator facilities and experiments, the design of machine, target and collimation systems, detectors and radiation shielding and minimization of their impact on environment. Recent advances in widely-used general-purpose all-particle codes are described for the most critical modules such as particle production event generators, elementary particle and heavy ion transport in an energy range which spans up to 17 decades, nuclide inventory and macroscopic impact on materials, and dealing with complex geometry of accelerator and detector structures. Future requirements for developing physics models and Monte-Carlo codes are discussed.

  1. Particle transport and distribution on the Mars Science Laboratory mission: Effects of triboelectric charging

    NASA Astrophysics Data System (ADS)

    Anderson, Robert C.; Beegle, Luther W.; Peters, Gregory H.; Fleming, Gerald M.; Jandura, Louise; Kriechbaum, Kristo; Manatt, Kenneth; Okon, Avi; Pounders, Erik; Sollitt, Luke; Sunshine, Dan

    2009-12-01

    We report on the nature of fine particle (<150 μm) transport under simulated martian conditions, in order to better understand the Mars Science Laboratory's (MSL) sample acquisition, processing and handling subsystem (SA/SPaH). We find that triboelectric charging due to particle movement may have to be controlled in order for successful transport of fines that are created within the drill, processed through the Collection and Handling for In situ Martian Rock Analysis (CHIMRA) sample handing system, and delivered to the Sample Analysis at Mars (SAM) and Chemistry and Mineralogy (CheMin) instruments. These fines will be transferred from the surface material to the portioner, a 3 mm diameter, 8 mm deep distribution center where they will drop ˜2 cm to the instrument inlet funnels. In our experiments, movement of different material including terrestrial analogs and martian soil simulants (Mars Mojave Simulant - MMS) resulted in 1-7 nanocoulombs of charge to build up for several different experimental configurations. When this charging phenomenon occurs, several different results are observed including particle clumping, adherence of material on conductive surfaces, or electrostatic repulsion, which causes like-charged particles to move away from each other. This electrostatic repulsion can sort samples based upon differing size fractions, while adhesion causes particles of different sizes to bind into clods. Identifying these electrostatic effects can help us understand potential bias in the analytical instruments and to define the best operational protocols to collect samples on the surface of Mars.

  2. Transport of Brownian particles in a narrow, slowly varying serpentine channel

    NASA Astrophysics Data System (ADS)

    Wang, Xinli; Drazer, German

    2015-04-01

    We study the transport of Brownian particles under a constant driving force and moving in channels that present a varying centerline but have constant aperture width (serpentine channels). We investigate two types of channels, solid channels, in which the particles are geometrically confined between solid walls and soft channels, in which the particles are confined by the potential energy landscape. We consider the limit of narrow, slowly varying channels, i.e., when the aperture and the variation in the position of the centerline are small compared to the length of a unit cell in the channel (wavelength). We use the method of asymptotic expansions to determine both the average velocity (or mobility) and the effective dispersion coefficient of the particles. We show that both solid and soft-channels have the same effects on the transport properties up to leading order correction. Including the next order correction, we obtain that the mobility in a solid-channel is smaller than that in a soft-channel. However, we discuss an alternative definition of the effective width of a soft channel that leads to equal mobilities up to second order terms. Interestingly, in both cases, the corrections to the mobility of the particles are independent of the Péclet number, and the Einstein-Smoluchowski relation is satisfied.

  3. Transport of Brownian particles in a narrow, slowly varying serpentine channel.

    PubMed

    Wang, Xinli; Drazer, German

    2015-04-21

    We study the transport of Brownian particles under a constant driving force and moving in channels that present a varying centerline but have constant aperture width (serpentine channels). We investigate two types of channels, solid channels, in which the particles are geometrically confined between solid walls and soft channels, in which the particles are confined by the potential energy landscape. We consider the limit of narrow, slowly varying channels, i.e., when the aperture and the variation in the position of the centerline are small compared to the length of a unit cell in the channel (wavelength). We use the method of asymptotic expansions to determine both the average velocity (or mobility) and the effective dispersion coefficient of the particles. We show that both solid and soft-channels have the same effects on the transport properties up to leading order correction. Including the next order correction, we obtain that the mobility in a solid-channel is smaller than that in a soft-channel. However, we discuss an alternative definition of the effective width of a soft channel that leads to equal mobilities up to second order terms. Interestingly, in both cases, the corrections to the mobility of the particles are independent of the Péclet number, and the Einstein-Smoluchowski relation is satisfied.

  4. Elipsa is an early determinant of ciliogenesis that links the IFT particle to membrane-associated small GTPase Rab8.

    PubMed

    Omori, Yoshihiro; Zhao, Chengtian; Saras, Arunesh; Mukhopadhyay, Saikat; Kim, Woong; Furukawa, Takahisa; Sengupta, Piali; Veraksa, Alexey; Malicki, Jarema

    2008-04-01

    The formation and function of cilia involves the movement of intraflagellar transport (IFT) particles underneath the ciliary membrane, along axonemal microtubules. Although this process has been studied extensively, its molecular basis remains incompletely understood. For example, it is unknown how the IFT particle interacts with transmembrane proteins. To study the IFT particle further, we examined elipsa, a locus characterized by mutations that cause particularly early ciliogenesis defects in zebrafish. We show here that elipsa encodes a coiled-coil polypeptide that localizes to cilia. Elipsa protein binds to Ift20, a component of IFT particles, and Elipsa homologue in Caenorhabditis elegans, DYF-11, translocates in sensory cilia, similarly to the IFT particle. This indicates that Elipsa is an IFT particle polypeptide. In the context of zebrafish embryogenesis, Elipsa interacts genetically with Rabaptin5, a well-studied regulator of endocytosis, which in turn interacts with Rab8, a small GTPase, known to localize to cilia. We show that Rabaptin5 binds to both Elipsa and Rab8, suggesting that these proteins provide a bridging mechanism between the IFT particle and protein complexes that assemble at the ciliary membrane.

  5. Particle size distributions and the sequential fragmentation/transport theory applied to volcanic ash

    NASA Astrophysics Data System (ADS)

    Wohletz, K. H.; Sheridan, M. F.; Brown, W. K.

    1989-11-01

    The assumption that distributions of mass versus size interval for fragmented materials fit the log normal distribution is empirically based and has historical roots in the late 19th century. Other often used distributions (e.g., Rosin-Rammler, Weibull) are also empirical and have the general form for mass per size interval: n(l) = klα exp (-lβ), where n(l) represents the number of particles of diameter l, l is the normalized particle diameter, and k, α, and β are constants. We describe and extend the sequential fragmentation distribution to include transport effects upon observed volcanic ash size distributions. The sequential fragmentation/transport (SFT) distribution is also of the above mathematical form, but it has a physical basis rather than empirical. The SFT model applies to a particle-mass distribution formed by a sequence of fragmentation (comminution) and transport (size sorting) events acting upon an initial mass m': n(x, m) = C ∫∫ n(x', m')p(ξ)dx' dm', where x' denotes spatial location along a linear axis, C is a constant, and integration is performed over distance from an origin to the sample location and mass limits from 0 to m. We show that the probability function that models the production of particles of different size from an initial mass and sorts that distribution, p(ξ), is related to mg, where g (noted as γ for fragmentation processes) is a free parameter that determines the location, breadth, and skewness of the distribution; g(γ) must be greater than -1, and it increases from that value as the distribution matures with greater number of sequential steps in the fragmentation or transport process; γ is expected to be near -1 for "sudden" fragmentation mechanisms such as single-event explosions and transport mechanisms that are functionally dependent upon particle mass. This free parameter will be more positive for evolved fragmentation mechanisms such as ball milling and complex transport processes such as saltation. The SFT

  6. New Capabilities in Mercury: A Modern, Monte Carlo Particle Transport Code

    SciTech Connect

    Procassini, R J; Cullen, D E; Greenman, G M; Hagmann, C A; Kramer, K J; McKinley, M S; O'Brien, M J; Taylor, J M

    2007-03-08

    The new physics, algorithmic and computer science capabilities of the Mercury general-purpose Monte Carlo particle transport code are discussed. The new physics and algorithmic features include in-line energy deposition and isotopic depletion, significant enhancements to the tally and source capabilities, diagnostic ray-traced particles, support for multi-region hybrid (mesh and combinatorial geometry) systems, and a probability of initiation method. Computer science enhancements include a second method of dynamically load-balancing parallel calculations, improved methods for visualizing 3-D combinatorial geometries and initial implementation of an in-line visualization capabilities.

  7. Asymmetric transport of light in linearly arrayed metallic nano-particles

    NASA Astrophysics Data System (ADS)

    Horchani, R.

    2016-02-01

    A strong asymmetric light transport in a linear chain of spherical and equidistantly spaced silver metal nano-particles (MNPs) located near a substrate is reported. The contrast ratio of the proposed structure is above 0.95. We have studied the propagation of light in the array with respect to the metal and the size of the last nano-particle of the chain and the nature of the substrate. It is shown also that the presence of a copper or gold substrate enhance the guiding properties of the array. This structure opens the possibility to design various optical devices such as broadband antennae and optical diodes.

  8. Asymmetric transport of light in linearly arrayed metallic nano-particles

    NASA Astrophysics Data System (ADS)

    Aroua, W.; Horchani, R.; AbdelMalek, F.; Haxha, S.; Kamli, Ali A.

    2016-09-01

    A strong asymmetric light transport in a linear chain of spherical and equidistantly spaced silver metal nano-particles (MNPs) located near a substrate is reported. The contrast ratio of the proposed structure is above 0.95. We have studied the propagation of light in the array with respect to the metal and the size of the last nano-particle of the chain and the nature of the substrate. It is shown also that the presence of a copper or gold substrate enhance the guiding properties of the array. This structure opens the possibility to design various optical devices such as broadband antennae and optical diodes.

  9. Particle and Energy Transport in the SOL of DIII-D and NSTX

    SciTech Connect

    Boedo, J; Maqueda, R; Rudakov, D; McKee, G; Kugel, H; Maingi, R; Crocker, N; Moyer, R; Soukhanovskii, V; Menard, J; Watkins, J; Zweben, S; D'Ippolito, D; Evans, T; Fenstermacher, M; Groth, M; Hollmann, E; Lasnier, C; Myra, J; Roquemore, L; West, W; Zeng, L

    2006-10-09

    The far scrape-off layer (SOL) radial transport and plasma-wall contact is mediated by intermittent and ELM-driven transport. Experiments to characterize the intermittent transport and ELMs have been performed in both DIII-D and NSTX under similar conditions. Both intermittent transport and ELMs are comprised of filaments of hot, dense plasma (n{sub e} {approx} 1 x 10{sup 13} cm{sup -3}, T{sub e} {approx} 400 eV) originating at the edge, transport both particles and heat into the SOL by convection, increasing wall interaction and causing sputtering and impurity release. Both intermittent filaments and ELMs leave the pedestal region at speeds of {approx}0.5-3 km/s, losing heat and particles by parallel transport as they travel through the SOL. The intermittency shows many similarities in NSTX and DIII-D, featuring similar size (2-5 cm), large convective radial velocity, ''holes'' inside and peaks outside the LCFS which quickly decay and slow down with radius. Whereas in DIII-D the intermittency decays in both intensity and frequency in H-mode, it chiefly decays in frequency in NSTX. In the low collisionality (v* = {pi}R{sub q{sub 95}}/{lambda}C) (v* {approx} 0.1, N{sub G} {approx} 0.3) case, the ELMs impact the walls quite directly and account for {approx}90% of the wall particle flux, decreasing to {approx}30% at (v* {approx} 1.0, N{sub G} > 0.6).

  10. The effect of convection upon charged particle transport in random magnetic fields

    NASA Technical Reports Server (NTRS)

    Earl, J. A.

    1984-01-01

    In a coordinate system moving with the plasma and random magnetic fields of a wind that blows with constant velocity in the direction of the guiding field, transport of energetic particles is described by a Boltzmann equation which is similar to the one that describes unconvected transport. Although this formulation is mathematically identical to that developed by Luhmann, which refers to the system where the guiding field is static, there are both practical and fundamental reasons to adopt the new approach. It leads to first-order approximate transport equations which are similar to those that apply in the absence of convection. However, these equations are more general than Parker's description of diffusion and convection, for they describe the coherent modes of transport that appear when the mean free path is large compared to the scale length for spatial variations of the guiding field, and they are valid for arbitrary wind velocity. The latter characteristic opens up new possibilities for analyzing particle transport in relativistic flows seen in some astronomical objects.

  11. Transport of particle-associated elements in two agriculture-dominated boreal river systems.

    PubMed

    Marttila, Hannu; Saarinen, Tuomas; Celebi, Ahmet; Kløve, Bjørn

    2013-09-01

    Transport of particulate pollutants in fluvial systems can contribute greatly to total loads. Understanding transport mechanics under different hydrological conditions is key in successful load estimation. This study analysed trace elements and physico-chemical parameters in time-integrated suspended sediment samples, together with dissolved and total concentrations of pollutants, along two agriculture- and peatland-dominated boreal river systems. The samples were taken in a spatially and temporally comprehensive sampling programme during the ice-free seasons of 2010 and 2011. The hydrochemistry and transport of particle-bound elements in the rivers were strongly linked to intense land use and acid sulphate soils in the catchment area, with arable, pasture and peat areas in particular being main diffuse sources. There were significant seasonal and temporal variations in dissolved and particulate fluxes, but spatial variations were small. Continuous measurements of EC, turbidity and discharge proved to be an accurate indicator of dissolved and particulate fluxes. Overall, the results show that transport of particle-bound elements makes a major contribution to total transport fluxes in agriculture-dominated boreal rivers.

  12. Stochastic simulation of charged particle transport on the massively parallel processor

    NASA Technical Reports Server (NTRS)

    Earl, James A.

    1988-01-01

    Computations of cosmic-ray transport based upon finite-difference methods are afflicted by instabilities, inaccuracies, and artifacts. To avoid these problems, researchers developed a Monte Carlo formulation which is closely related not only to the finite-difference formulation, but also to the underlying physics of transport phenomena. Implementations of this approach are currently running on the Massively Parallel Processor at Goddard Space Flight Center, whose enormous computing power overcomes the poor statistical accuracy that usually limits the use of stochastic methods. These simulations have progressed to a stage where they provide a useful and realistic picture of solar energetic particle propagation in interplanetary space.

  13. Transport and particle-hole asymmetry in graphene on boron nitride

    NASA Astrophysics Data System (ADS)

    DaSilva, Ashley M.; Jung, Jeil; Adam, Shaffique; MacDonald, Allan H.

    2015-06-01

    All local electronic properties of graphene on a hexagonal boron nitride (hBN) substrate exhibit spatial moiré patterns related to lattice constant and orientation differences between shared triangular Bravais lattices. We apply a previously derived effective Hamiltonian for the π bands of graphene on hBN to address the carrier dependence of transport properties, concentrating on the conductivity features at four electrons and four holes per unit cell. These transport features measure the strength of Bragg scattering of π electrons off the moiré pattern, and they exhibit a striking particle-hole asymmetry that we trace to specific features of the effective Hamiltonian that we interpret physically.

  14. Computational modeling of monoenergetic neutral particle inverse transport problems in slab geometry

    NASA Astrophysics Data System (ADS)

    Gomes, Rodrigo R.; Barros, Ricardo C.

    2012-09-01

    Presented here is an analytical numerical method applied to three different types of monoenergetic neutral particle inverse transport problems in the discrete ordinates (SN) formulation: (a) boundary condition estimation; (b) interior source estimation; and (c) effective slab length estimation. These three types of inverse problems governed by the linear integrodifferential transport equation in SN formulation are related respectively to medical physics (a); nuclear waste storage (b); and non-destructive testing in industry (c). Numerical results and a brief discussion are given to conclude this paper.

  15. Cytoplasmic transport in keratocytes: direct visualization of particle translocation along microtubules.

    PubMed

    Hayden, J H; Allen, R D; Goldman, R D

    1983-01-01

    We report the first direct demonstration that the cytoplasmic transport of organelles and vesicles (collectively called particles) takes place along microtubules. Living keratocytes from the corneal stroma of the frog, Rana pipiens were observed with Allen video-enhanced contrast, differential interference contrast (AVEC-DIC) microscopy [Allen et al, 1981]. In sufficiently thin regions of these cells a network of linear elements was visible. When particles were observed in motion, they always moved along these linear elements. The linear elements remained intact and in focus on the microscope when lysed in a cell lysis solution that stabilized microtubules. Preparations were then fixed in formaldehyde, washed with phosphate-buffered saline (PBS), incubated with rabbit antitubulin, washed with PBS, stained with rhodamine-conjugated goat antirabbit, and washed with PBS. The extracted cells continued to remain in place and in focus on the microscope throughout these procedures. The same cells were then observed using epifluorescence optics and a silicon-intensified target (SIT) video camera. A network of fluorescent linear elements was seen to correspond in number, form, and position to the linear elements seen in the live AVEC-DIC image. Taken together, the AVEC-DIC and fluorescence microscopy observations prove that the linear elements along which particles move are microtubules (MTLEs). The observed particle speeds, pause times, and distances moved varied widely, even for the same particle on the same microtubule. Particles were also observed to switch from one microtubule to another as they were transported. The polarity of the microtubules did not seem to affect the particle direction, since particles were observed to move in both directions on the same MTLE. When not in motion these particles behaved as if anchored to the microtubules since they showed negligible Brownian motion. Finally, it was observed that an elongate particle could move onto two intersecting

  16. Exposure to ultrafine particles and PM 2.5 in four Sydney transport modes

    NASA Astrophysics Data System (ADS)

    Knibbs, Luke D.; de Dear, Richard J.

    2010-08-01

    Concentrations of ultrafine (<0.1 μm) particles (UFPs) and PM 2.5 (<2.5 μm) were measured whilst commuting along a similar route by train, bus, ferry and automobile in Sydney, Australia. One trip on each transport mode was undertaken during both morning and evening peak hours throughout a working week, for a total of 40 trips. Analyses comprised one-way ANOVA to compare overall (i.e. all trips combined) geometric mean concentrations of both particle fractions measured across transport modes, and assessment of both the correlation between wind speed and individual trip means of UFPs and PM 2.5, and the correlation between the two particle fractions. Overall geometric mean concentrations of UFPs and PM 2.5 ranged from 2.8 (train) to 8.4 (bus) × 10 4 particles cm -3 and 22.6 (automobile) to 29.6 (bus) μg m -3, respectively, and a statistically significant difference ( p < 0.001) between modes was found for both particle fractions. Individual trip geometric mean concentrations were between 9.7 × 10 3 (train) and 2.2 × 10 5 (bus) particles cm -3 and 9.5 (train) to 78.7 (train) μg m -3. Estimated commuter exposures were variable, and the highest return trip mean PM 2.5 exposure occurred in the ferry mode, whilst the highest UFP exposure occurred during bus trips. The correlation between fractions was generally poor, and in keeping with the duality of particle mass and number emissions in vehicle-dominated urban areas. Wind speed was negatively correlated with, and a generally poor determinant of, UFP and PM 2.5 concentrations, suggesting a more significant role for other factors in determining commuter exposure.

  17. Particle Transport along Magnetic Null Lines as Sputter or Antihydrogen Source

    NASA Astrophysics Data System (ADS)

    Lane, R. A.; Ordonez, C. A.

    Particle transport along null magnetic lines is investigated using classical trajectory Monte Carlo simulations and described as a traveling wave and through diffusion equations. A magnetic null line is defined as a one-dimensional region where the magnetic field magnitude is zero. This region may take any shape in three-dimensional space. The field used in the simulations is generated by two infinite wires of negligible thickness carrying identical current and separated by a small distance. Thus, an infinite magnetic null line exists directly between the wires. The particle trajectories are simulated by solving the equations of motion for each simulated particle of a mono- energetic set. Each is considered individually, with all trajectories starting from the same position along the null line. Each trajectory is simulated until it reaches a specified distance from the initial point or a maximum time elapses. The simulation is repeated using a full set for multiple endpoints and maximum times for ten different amounts of current in the wires. Each current value is selected so that no particles can travel more than seven times the distance between the wires from the null line. The fraction of particles that reach the endpoint in a given time is calculated and used to describe particle transport parallel to the null line. The results are given in normalized, dimensionless units and their possible applications as an antihydrogen source and use in ultra-high purity sputter are discussed. The results are used to find the conditions necessary to obtain a steady and uniform particle flux suitable for ultra-high purity sputter, assuming that plasma is generated near the null line.

  18. Sources, transport, and mixing of particle-bound PAHs fluxes in the upper Neckar River basin

    NASA Astrophysics Data System (ADS)

    Schwientek, Marc; Rügner, Hermann; Qin, Xintong; Scherer, Ulrike; Grathwohl, Peter

    2016-04-01

    Transport of many urban pollutants in rivers is coupled to transport of suspended particles. The degree of contamination of these suspended particles depends on the mixture of "polluted" urban and "clean" background particles. Recent results have shown that, in several meso-scale catchments studied in southwestern and eastern Germany, the loading of particles with polycyclic aromatic hydrocarbons (PAHs) was stable over time and characteristic for each catchment. The absence of significant long-term trends or pronounced changes of the catchment-specific loadings indicate that either input and output of PAHs into the stream networks are largely at steady state or that storage of PAHs in the sediments within the stream network are sufficient to smooth out larger fluctuations. Moreover, it was shown that the contamination of sediments and suspended particles with PAHs is proportional to the number of inhabitants per suspended sediment flux in a catchment. These processes are being further studied at larger scale in the upper Neckar River basin (2300 km²) in southwestern Germany. This basin, located between the mountain ranges of the Black Forest and the Swabian Alb, comprises sub-catchments that are diverse in terms of urban impact, geology (ranging from gypsum and limetstones to siliceous sandstones) and hydrology (dynamics driven either by summerly convective events or by winterly frontal systems and snow melt). Accordingly, quality and quantity of particles being released in the sub-catchments as potential vectors for hydrophobic pollutants differ; and so do the events that mobilize the particles. These settings enable the investigation of how particle-bound pollutant fluxes generated at the meso-scale are mixed and transported at larger scales when introduced into a higher order river. A prominent research question is whether varying contributions from contrasting sub-catchments lead to changing contamination patterns in the main stem or if the sediment storage in

  19. A New Monitoring Method of Individual Particles During Bed Load Transport in a Gravel Bed River.

    NASA Astrophysics Data System (ADS)

    Tremblay, M.; Marquis, G.; Roy, A.; Lamarre, H.

    2009-05-01

    Many particle tracers (passive or active) have been developed to study gravel movement in rivers. It remains difficult however to document resting and moving periods and to know how particles travel from one sedimentation site to another. We have developed a new tracking method using the Hobo Pendant G acceleration Data Logger, to quantitatively describe the motion of individual particles from the initiation of movement, through the displacement and to the rest, in a natural gravel river. The Hobo measures the acceleration in three dimensions at a chosen frequency. Hobo Pendant G Acceleration data logger were inserted into 11 artificial rocks and seeded in Ruisseau Béard, a small gravel river in the Yamaska drainage basin (Québec). The hydraulics, particle sizes and bed characteristics of this site are well known. Controlled tests have been performed before the field experiment to understand the response of the instrument. The results allow us to develop an algorithm which classifies the signal into periods of rest and motion. The algorithm can also differentiate the type of motion: vibration, rolling and sliding of the particles. The data allow us to describe the time of movement, the path length and the velocity of the particles. The comparison of the movement and rest periods to the hydraulic conditions (discharge, shear stress, stream power) established the movement threshold and response times. Relations with bed roughness and morphology were also established. Finally, the development of a 2-dimension model helps visualizing the angular variation motion and a 3D model allows the reconstitution of the particle trajectories on the bed. This method offers great potential to track individual particles and to study bedload transport in rivers. This first attempt needs to be further improved especially to retire the degree of precision of the movement detection. The method should also be tested with frequencies higher than one minute, with more particles of

  20. Recent Improvements of Particle and Heavy Ion Transport code System: PHITS

    NASA Astrophysics Data System (ADS)

    Sato, Tatsuhiko; Niita, Koji; Iwamoto, Yosuke; Hashimoto, Shintaro; Ogawa, Tatsuhiko; Furuta, Takuya; Abe, Shin-ichiro; Kai, Takeshi; Matsuda, Norihiro; Okumura, Keisuke; Kai, Tetsuya; Iwase, Hiroshi; Sihver, Lembit

    2017-09-01

    The Particle and Heavy Ion Transport code System, PHITS, has been developed under the collaboration of several research institutes in Japan and Europe. This system can simulate the transport of most particles with energy levels up to 1 TeV (per nucleon for ion) using different nuclear reaction models and data libraries. More than 2,500 registered researchers and technicians have used this system for various applications such as accelerator design, radiation shielding and protection, medical physics, and space- and geo-sciences. This paper summarizes the physics models and functions recently implemented in PHITS, between versions 2.52 and 2.88, especially those related to source generation useful for simulating brachytherapy and internal exposures of radioisotopes.

  1. Modeling and analysis of surface roughness effects on sputtering, reflection, and sputtered particle transport

    SciTech Connect

    Brooks, J.N. ); Ruzic, D.N. )

    1990-01-01

    The microstructure of the redeposited surface in tokamaks may affect sputtering and reflection properties and subsequent particle transport. This subject has been studied numerically using coupled models/codes for near-surface plasma particle kinetic transport (WBC code) and rough surface sputtering (fractal-TRIM). The coupled codes provide an overall Monte Carlo calculation of the sputtering cascade resulting from an initial flux of hydrogen ions. Beryllium, carbon, and tungsten surfaces are analyzed for typical high recycling, oblique magnetic field, divertor conditions. Significant variations in computed sputtering rates are found with surface roughness. Beryllium exhibits high D-T and self-sputtering coefficients for the plasma regime studied (T{sub e} = 30-75 eV). Carbon and tungsten sputtering is significantly lower. 9 refs., 6 figs., 1 tab.

  2. Large scale transport of fine sulfur particles in the intermontane United States

    NASA Astrophysics Data System (ADS)

    Ashbaugh, L. L.

    This research was undertaken to study the patterns and modes of transport of fine sulfur particles in the western United States. Particles were collected in two size ranges using stacked filter samplers at 40 remote sampling sites in Montana, North and South Dakota. Wyoming, Utah, Colorado, Arizona, and New Mexico. Meteorological data were obtained from the National Climatic Center. Two three-day samples were collected each week for two years. Eulerian transort fields were determined by combining the measured concentrations with the meteorological data. An empirical orthogonal function analysis was carried out to determine spatial patterns in the sulfur variability. A statistical Lagrangian trajectory analysis was carried out usng 1980 data to determine surce regions for clean and polluted air arriving at two sites. Finally, a preliminary diffusion model calculation was made to test the theory against measured concentrations. Maps of sulfur concentrations, wind fields, and mean and synoptic scale eddy transport fields are presented for several averaging periods.

  3. Crossed fiber optic Bessel beams for curvilinear optofluidic transport of dielectric particles.

    PubMed

    Kim, Jongki; Lee, Sungrae; Jeong, Yoonseob; Kim, Jun-Ki; Jung, Yongmin; Merenda, Fabrice; Salathè, Renè-Paul; Shin, Jeon-Soo; Oh, Kyunghwan

    2013-10-07

    Due to its unique non-diffracting and self-reconstructing nature, Bessel beams have been successfully adopted to trap multiple particles along the beam's axial direction. However, prior bulk-optic based Bessel beams have a fundamental form-factor limitation for in situ, in-vitro, and in-vivo applications. Here we present a novel implementation of Fourier optics along a single strand of hybrid optical fiber in a monolithic manner that can generate pseudo Bessel beam arrays in two-dimensional space. We successfully demonstrate unique optofluidic transport of the trapped dielectric particles along a curvilinear optical route by multiplexing the fiber optic pseudo Bessel beams. The proposed technique can form a new building block to realize reconfigurable optofluidic transportation of particulates that can break the limitations of both prior bulk-optic Bessel beam generation techniques and conventional microfluidic channels.

  4. A model for particle-selective transport of tracers in sediments with conveyor belt deposit feeders

    NASA Astrophysics Data System (ADS)

    Robbins, John A.

    1986-07-01

    Conveyor belt deposit-feeding organisms prevalent in both marine and freshwater systems have a profound effect on sediment properties and transport processes. These organisms ingest sediments over a range of depths while depositing gut contents from tails protruding above the sediment surface. This action results in particle-selective transfer of buried materials to the sediment surface and imposes an accelerated rate of sediment and pore water burial within the feeding zone. Most previous efforts to combine sediment diagenesis with the effects of biogenic reworking characterize mixing as exclusively diffusive and ignore such major advective effects. Here a model is developed, based on fundamental diagenetic equations for transport and reaction, for the distribution of tracers in accumulating sediments subject to compaction and diffusive as well as advective redistribution by benthic organisms. Conveyor belt (CB) feeding is characterized as a first-order process with a depth-dependent rate constant which is either localized (Gaussian) or distributed (integrated Gaussian). Biogenic diffusivity of bulk sediments is allowed these alternative depth dependences as well. The model assumes simple linear adsorption of the tracer between solid and solution phases and uses a time-dependent flux at (x = 0) which is a combination of that originating externally and the depth-integrated contributions from feeding. Particle selectivity is introduced by applying mass conservation separately to transport of the tracer and bulk sediments. Properties of the model are illustrated for tracers in nondispersive systems strongly bound to sediment solids. CB recycling gives rise to transient reflections on passage of a tracer pulse through the zone of bioturbation. Reflections readily disappear in the presence of various integrative processes. The system time resolution is defined in terms of the downward propagation of dual tracer pulses and shown to be systematically degraded by

  5. Transport of membrane-bound mineral particles in blood vessels during chicken embryonic bone development.

    PubMed

    Kerschnitzki, Michael; Akiva, Anat; Ben Shoham, Adi; Koifman, Naama; Shimoni, Eyal; Rechav, Katya; Arraf, Alaa A; Schultheiss, Thomas M; Talmon, Yeshayahu; Zelzer, Elazar; Weiner, Stephen; Addadi, Lia

    2016-02-01

    During bone formation in embryos, large amounts of calcium and phosphate are taken up and transported to the site where solid mineral is first deposited. The initial mineral forms in vesicles inside osteoblasts and is deposited as a highly disordered calcium phosphate phase. The mineral is then translocated to the extracellular space where it penetrates the collagen matrix and crystallizes. To date little is known about the transport mechanisms of calcium and phosphate in the vascular system, especially when high transport rates are needed and the concentrations of these ions in the blood serum may exceed the solubility product of the mineral phase. Here we used a rapidly growing biological model, the chick embryo, to study the bone mineralization pathway taking advantage of the fact that large amounts of bone mineral constituents are transported. Cryo scanning electron microscopy together with cryo energy dispersive X-ray spectroscopy and focused-ion beam imaging in the serial surface view mode surprisingly reveal the presence of abundant vesicles containing small mineral particles in the lumen of the blood vessels. Morphologically similar vesicles are also found in the cells associated with bone formation. This observation directly implicates the vascular system in solid mineral distribution, as opposed to the transport of ions in solution. Mineral particle transport inside vesicles implies that far larger amounts of the bone mineral constituents can be transported through the vasculature, without the danger of ectopic precipitation. This introduces a new stage into the bone mineral formation pathway, with the first mineral being formed far from the bone itself.

  6. Influence of permeability on nanoscale zero-valent iron particle transport in saturated homogeneous and heterogeneous porous media.

    PubMed

    Strutz, Tessa J; Hornbruch, Götz; Dahmke, Andreas; Köber, Ralf

    2016-09-01

    Nanoscale zero-valent iron (NZVI) particles can be used for in situ groundwater remediation. The spatial particle distribution plays a very important role in successful and efficient remediation, especially in heterogeneous systems. Initial sand permeability (k 0) influences on spatial particle distributions were investigated and quantified in homogeneous and heterogeneous systems within the presented study. Four homogeneously filled column experiments and a heterogeneously filled tank experiment, using different median sand grain diameters (d 50), were performed to determine if NZVI particles were transported into finer sand where contaminants could be trapped. More NZVI particle retention, less particle transport, and faster decrease in k were observed in the column studies using finer sands than in those using coarser sands, reflecting a function of k 0. In heterogeneous media, NZVI particles were initially transported and deposited in coarse sand areas. Increasing the retained NZVI mass (decreasing k in particle deposition areas) caused NZVI particles to also be transported into finer sand areas, forming an area with a relatively homogeneous particle distribution and converged k values despite the different grain sizes present. The deposited-particle surface area contribution to the increasing of the matrix surface area (θ) was one to two orders of magnitude higher for finer than coarser sand. The dependency of θ on d 50 presumably affects simulated k changes and NZVI distributions in numerical simulations of NZVI injections into heterogeneous aquifers. The results implied that NZVI can in principle also penetrate finer layers.

  7. Effect of Hydrodynamics on Particle Transport in Saturated Fractures: Experimental and Simulation Results