Nonlinear Plasma Response to Resonant Magnetic Perturbation in Rutherford Regime

NASA Astrophysics Data System (ADS)

Zhu, Ping; Yan, Xingting; Huang, Wenlong

2017-10-01

Recently a common analytic relation for both the locked mode and the nonlinear plasma response in the Rutherford regime has been developed based on the steady-state solution to the coupled dynamic system of magnetic island evolution and torque balance equations. The analytic relation predicts the threshold and the island size for the full penetration of resonant magnetic perturbation (RMP). It also rigorously proves a screening effect of the equilibrium toroidal flow. In this work, we test the theory by solving for the nonlinear plasma response to a single-helicity RMP of a circular-shaped limiter tokamak equilibrium with a constant toroidal flow, using the initial-value, full MHD simulation code NIMROD. Time evolution of the parallel flow or ``slip frequency'' profile and its asymptotic approach to steady state obtained from the NIMROD simulations qualitatively agree with the theory predictions. Further comparisons are carried out for the saturated island size, the threshold for full mode penetration, as well as the screening effects of equilibrium toroidal flow in order to understand the physics of nonlinear plasma response in the Rutherford regime. Supported by National Magnetic Confinement Fusion Science Program of China Grants 2014GB124002 and 2015GB101004, the 100 Talent Program of the Chinese Academy of Sciences, and U.S. Department of Energy Grants DE-FG02-86ER53218 and DE-FC02-08ER54975.

Erosion of volcanic ocean islands: insights from modeling, topographic analyses, and cosmogenic exposure dating

NASA Astrophysics Data System (ADS)

Huppert, K.; Perron, J. T.; Ferrier, K.; Mukhopadhyay, S.; Rosener, M.; Douglas, M.

2016-12-01

With homogeneous bedrock, dramatic rainfall gradients, paleoshorelines, and datable remnant topography, volcanic ocean islands provide an exceptional natural experiment in landscape evolution. Analyses traversing gradients in island climate and bedrock age have the potential to advance our understanding of landscape evolution in a diverse range of continental settings. However, as small, conical, dominantly subsiding, and initially highly permeable landmasses, islands are unique, and it remains unclear how these properties influence their erosional history. We use a landscape evolution model and observations from the Hawaiian island of Kaua'i and other islands to characterize the topographic evolution of volcanic ocean islands. We present new measurements of helium-3 concentrations in detrital olivine from 20 rivers on Kaua'i. These measurements indicate that minimum erosion rates over the past 3 to 48 kyr are on average 2.6 times faster than erosion rates averaged over the past 3.9 to 4.4 Myr estimated from the volume of river canyons. This apparent acceleration of erosion rates on Kaua'i is consistent with observations on other islands; erosion rates estimated from the volume of river canyons on 31 islands worldwide, combined with observations of minimal incision on young island volcanoes, suggest a progressive increase in erosion rates over the first few million years of island landscape development. Using a landscape evolution model, we perform a set of experiments to quantify the contribution of subsidence, climate change, and initial geometry to changes in island erosion rates through time. We base these experiments on the evolution of Kaua'i, and we use measured erosion rates and the observed topography to calibrate the model. We find that progressive steepening of island topography by canyon incision drives an acceleration of erosion rates over time. Increases in mean channel and hillslope gradient with island age in the global compilation suggest this may be a general trend in the topographic evolution of volcanic ocean islands.

Trench curvature initiation: Upper plate strain pattern and volcanism Insights from the Lesser Antilles arc, St Barthélemy Island, FWI.

NASA Astrophysics Data System (ADS)

Philippon, M. M.; Legendre, L.; Münch, P.; Léticée, J. L.; Lebrun, J. F.; Maincent, G.; Mazabraud, Y.

2017-12-01

Upper plate deformation pattern reflect the mechanical behavior of subduction zones. In this study, we focus on the consequence of the entrance of a buoyant plateau within the Caribbean subduction zone during Eocene by studying the oldest cropping out rocks of the Lesser Antilles volcanic arc. Based on novel geochronological ages and available bio-stratigraphic data we show that St Barthélemy Island was built during three successive volcanic events over the Mid- Eocene to Oligo-Miocene time span. We show that magmatism is mainly Oligocene, not Eocene. Moreover, we demonstrate that tholeitic and calc-alkaline magmatism co-existed all along the arc activity. And ultimately we evidence a westward migration of the volcanism at the island scale. Furthermore, We demonstrate that during 21 Ma, the built of theses volcanoes, the stress regime evolves from pure to radial extension with a sub-horizontal σ3 showing N30° mean trend. To conclude, our novel results invalidate the chronological, geochemical and spatial evolution of the island arc magmatism formerly proposed in the early eighties. Indeed, arc magmatism in St Barthélemy was mainly related to the West-dipping Lesser Antilles subduction zone and not to the South-dipping Greater Antilles subduction and upper plate deformation evolution observed at local scale reflects large scale mechanical behavior of the Lesser Antilles subduction zone. A two steps restoration of the regional deformation shows that the switch from pure parallel to the trench extension to radial extension within the Caribbean upper plate reflects trench curvature that followed the entrance of the Bahamas bank in the Greater Antilles subduction zone and its collision.

The effect of selection environment on the probability of parallel evolution.

PubMed

Bailey, Susan F; Rodrigue, Nicolas; Kassen, Rees

2015-06-01

Across the great diversity of life, there are many compelling examples of parallel and convergent evolution-similar evolutionary changes arising in independently evolving populations. Parallel evolution is often taken to be strong evidence of adaptation occurring in populations that are highly constrained in their genetic variation. Theoretical models suggest a few potential factors driving the probability of parallel evolution, but experimental tests are needed. In this study, we quantify the degree of parallel evolution in 15 replicate populations of Pseudomonas fluorescens evolved in five different environments that varied in resource type and arrangement. We identified repeat changes across multiple levels of biological organization from phenotype, to gene, to nucleotide, and tested the impact of 1) selection environment, 2) the degree of adaptation, and 3) the degree of heterogeneity in the environment on the degree of parallel evolution at the gene-level. We saw, as expected, that parallel evolution occurred more often between populations evolved in the same environment; however, the extent of parallel evolution varied widely. The degree of adaptation did not significantly explain variation in the extent of parallelism in our system but number of available beneficial mutations correlated negatively with parallel evolution. In addition, degree of parallel evolution was significantly higher in populations evolved in a spatially structured, multiresource environment, suggesting that environmental heterogeneity may be an important factor constraining adaptation. Overall, our results stress the importance of environment in driving parallel evolutionary changes and point to a number of avenues for future work for understanding when evolution is predictable. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by Independent Acquisition of Related Pathogenicity Islands

PubMed Central

Xu, Feng; Drees, Kevin P.; Sebra, Robert P.; Jones, Stephen H.

2017-01-01

ABSTRACT Shellfish-transmitted Vibrio parahaemolyticus infections have recently increased from locations with historically low disease incidence, such as the Northeast United States. This change coincided with a bacterial population shift toward human-pathogenic variants occurring in part through the introduction of several Pacific native lineages (ST36, ST43, and ST636) to nearshore areas off the Atlantic coast of the Northeast United States. Concomitantly, ST631 emerged as a major endemic pathogen. Phylogenetic trees of clinical and environmental isolates indicated that two clades diverged from a common ST631 ancestor, and in each of these clades, a human-pathogenic variant evolved independently through acquisition of distinct Vibrio pathogenicity islands (VPaI). These VPaI differ from each other and bear little resemblance to hemolysin-containing VPaI from isolates of the pandemic clonal complex. Clade I ST631 isolates either harbored no hemolysins or contained a chromosome I-inserted island we call VPaIβ that encodes a type 3 secretion system (T3SS2β) typical of Trh hemolysin producers. The more clinically prevalent and clonal ST631 clade II had an island we call VPaIγ that encodes both tdh and trh and that was inserted in chromosome II. VPaIγ was derived from VPaIβ but with some additional acquired elements in common with VPaI carried by pandemic isolates, exemplifying the mosaic nature of pathogenicity islands. Genomics comparisons and amplicon assays identified VPaIγ-type islands containing tdh inserted adjacent to the ure cluster in the three introduced Pacific and most other emergent lineages that collectively cause 67% of infections in the Northeast United States as of 2016. IMPORTANCE The availability of three different hemolysin genotypes in the ST631 lineage provided a unique opportunity to employ genome comparisons to further our understanding of the processes underlying pathogen evolution. The fact that two different pathogenic clades arose in parallel from the same potentially benign lineage by independent VPaI acquisition is surprising considering the historically low prevalence of community members harboring VPaI in waters along the Northeast U.S. coast that could serve as the source of this material. This illustrates a possible predisposition of some lineages to not only acquire foreign DNA but also become human pathogens. Whereas the underlying cause for the expansion of V. parahaemolyticus lineages harboring VPaIγ along the U.S. Atlantic coast and spread of this element to multiple lineages that underlies disease emergence is not known, this work underscores the need to define the environment factors that favor bacteria harboring VPaI in locations of emergent disease. PMID:28687650

Incipient radiation within the dominant Hawaiian tree Metrosideros polymorpha

PubMed Central

Stacy, E A; Johansen, J B; Sakishima, T; Price, D K; Pillon, Y

2014-01-01

Although trees comprise a primary component of terrestrial species richness, the drivers and temporal scale of divergence in trees remain poorly understood. We examined the landscape-dominant tree, Metrosideros polymorpha, for variation at nine microsatellite loci across 23 populations on young Hawai'i Island, sampling each of the island's five varieties throughout its full geographic range. For four varieties, principal coordinate analysis revealed strong clustering of populations by variety across the 10 430 km2 island, indicating partitioning of the species into multiple evolutionarily significant units. The single island-endemic form, riparian var. newellii, showed especially strong differentiation from other varieties despite occurring in sympatry with other varieties and likely evolved from a bog form on the oldest volcano, Kohala, within the past 500 000 years. Along with comparable riparian forms on other Pacific Islands, var. newellii appears to represent parallel incipient ecological speciation within Metrosideros. Greater genetic distance among the more common varieties on the oldest volcano and an inverse relationship between allelic diversity and substrate age appear consistent with colonization of Hawai'i Island by older, partially diverged varieties followed by increased hybridization among varieties on younger volcanoes. This study demonstrates that broad population-level sampling is required to uncover patterns of diversification within a ubiquitous and long-lived tree species. Hawaiian Metrosideros appears to be a case of incipient radiation in trees and thus should be useful for studies of divergence and the evolution of reproductive isolating barriers at the early stages of speciation. PMID:24824285

Parallel heat transport in integrable and chaotic magnetic fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Del-Castillo-Negrete, Diego B; Chacon, Luis

2012-01-01

The study of transport in magnetized plasmas is a problem of fundamental interest in controlled fusion, space plasmas, and astrophysics research. Three issues make this problem particularly chal- lenging: (i) The extreme anisotropy between the parallel (i.e., along the magnetic field), , and the perpendicular, , conductivities ( / may exceed 1010 in fusion plasmas); (ii) Magnetic field lines chaos which in general complicates (and may preclude) the construction of magnetic field line coordinates; and (iii) Nonlocal parallel transport in the limit of small collisionality. Motivated by these issues, we present a Lagrangian Green s function method to solve themore » local and non-local parallel transport equation applicable to integrable and chaotic magnetic fields in arbitrary geom- etry. The method avoids by construction the numerical pollution issues of grid-based algorithms. The potential of the approach is demonstrated with nontrivial applications to integrable (magnetic island chain), weakly chaotic (devil s staircase), and fully chaotic magnetic field configurations. For the latter, numerical solutions of the parallel heat transport equation show that the effective radial transport, with local and non-local closures, is non-diffusive, thus casting doubts on the appropriateness of the applicability of quasilinear diffusion descriptions. General conditions for the existence of non-diffusive, multivalued flux-gradient relations in the temperature evolution are derived.« less

ACCELERATED EVOLUTION OF LAND SNAILS MANDARINA IN THE OCEANIC BONIN ISLANDS: EVIDENCE FROM MITOCHONDRIAL DNA SEQUENCES.

PubMed

Chiba, Satoshi

1999-04-01

An endemic land snail genus Mandarina of the oceanic Bonin (Ogasawara) Islands shows exceptionally rapid evolution not only of morphological and ecological traits, but of DNA sequence. A phylogenetic relationship based on mitochondrial DNA (mtDNA) sequences suggests that morphological differences equivalent to the differences between families were produced between Mandarina and its ancestor during the Pleistocene. The inferred phylogeny shows that species with similar morphologies and life habitats appeared repeatedly and independently in different lineages and islands at different times. Sequential adaptive radiations occurred in different islands of the Bonin Islands and species occupying arboreal, semiarboreal, and terrestrial habitat arose independently in each island. Because of a close relationship between shell morphology and life habitat, independent evolution of the same life habitat in different islands created species possesing the same shell morphology in different islands and lineages. This rapid evolution produced some incongruences between phylogenetic relationship and species taxonomy. Levels of sequence divergence of mtDNA among the species of Mandarina is extremely high. The maximum level of sequence divergence at 16S and 12S ribosomal RNA sequence within Mandarina are 18.7% and 17.7%, respectively, and this suggests that evolution of mtDNA of Mandarina is extremely rapid, more than 20 times faster than the standard rate in other animals. The present examination reveals that evolution of morphological and ecological traits occurs at extremely high rates in the time of adaptive radiation, especially in fragmented environments. © 1999 The Society for the Study of Evolution.

The tempo and mode of evolution: body sizes of island mammals.

PubMed

Raia, Pasquale; Meiri, Shai

2011-07-01

The tempo and mode of body size evolution on islands are believed to be well known. It is thought that body size evolves relatively quickly on islands toward the mammalian modal value, thus generating extreme cases of size evolution and the island rule. Here, we tested both theories in a phylogenetically explicit context, by using two different species-level mammalian phylogenetic hypotheses limited to sister clades dichotomizing into an exclusively insular and an exclusively mainland daughter nodes. Taken as a whole, mammals were found to show a largely punctuational mode of size evolution. We found that, accounting for this, and regardless of the phylogeny used, size evolution on islands is no faster than on the continents. We compared different selection regimes using a set of Ornstein-Uhlenbeck models to examine the effects of insularity of the mode of evolution. The models strongly supported clade-specific selection regimes. Under this regime, however, an evolutionary model allowing insular species to evolve differently from their mainland relatives performs worse than a model that ignores insularity as a factor. Thus, insular taxa do not experience statistically different selection from their mainland relatives. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Using Hadoop MapReduce for Parallel Genetic Algorithms: A Comparison of the Global, Grid and Island Models.

PubMed

Ferrucci, Filomena; Salza, Pasquale; Sarro, Federica

2017-06-29

The need to improve the scalability of Genetic Algorithms (GAs) has motivated the research on Parallel Genetic Algorithms (PGAs), and different technologies and approaches have been used. Hadoop MapReduce represents one of the most mature technologies to develop parallel algorithms. Based on the fact that parallel algorithms introduce communication overhead, the aim of the present work is to understand if, and possibly when, the parallel GAs solutions using Hadoop MapReduce show better performance than sequential versions in terms of execution time. Moreover, we are interested in understanding which PGA model can be most effective among the global, grid, and island models. We empirically assessed the performance of these three parallel models with respect to a sequential GA on a software engineering problem, evaluating the execution time and the achieved speedup. We also analysed the behaviour of the parallel models in relation to the overhead produced by the use of Hadoop MapReduce and the GAs' computational effort, which gives a more machine-independent measure of these algorithms. We exploited three problem instances to differentiate the computation load and three cluster configurations based on 2, 4, and 8 parallel nodes. Moreover, we estimated the costs of the execution of the experimentation on a potential cloud infrastructure, based on the pricing of the major commercial cloud providers. The empirical study revealed that the use of PGA based on the island model outperforms the other parallel models and the sequential GA for all the considered instances and clusters. Using 2, 4, and 8 nodes, the island model achieves an average speedup over the three datasets of 1.8, 3.4, and 7.0 times, respectively. Hadoop MapReduce has a set of different constraints that need to be considered during the design and the implementation of parallel algorithms. The overhead of data store (i.e., HDFS) accesses, communication, and latency requires solutions that reduce data store operations. For this reason, the island model is more suitable for PGAs than the global and grid model, also in terms of costs when executed on a commercial cloud provider.

Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson.

PubMed

Warren, Ben H; Simberloff, Daniel; Ricklefs, Robert E; Aguilée, Robin; Condamine, Fabien L; Gravel, Dominique; Morlon, Hélène; Mouquet, Nicolas; Rosindell, James; Casquet, Juliane; Conti, Elena; Cornuault, Josselin; Fernández-Palacios, José María; Hengl, Tomislav; Norder, Sietze J; Rijsdijk, Kenneth F; Sanmartín, Isabel; Strasberg, Dominique; Triantis, Kostas A; Valente, Luis M; Whittaker, Robert J; Gillespie, Rosemary G; Emerson, Brent C; Thébaud, Christophe

2015-02-01

The study of islands as model systems has played an important role in the development of evolutionary and ecological theory. The 50th anniversary of MacArthur and Wilson's (December 1963) article, 'An equilibrium theory of insular zoogeography', was a recent milestone for this theme. Since 1963, island systems have provided new insights into the formation of ecological communities. Here, building on such developments, we highlight prospects for research on islands to improve our understanding of the ecology and evolution of communities in general. Throughout, we emphasise how attributes of islands combine to provide unusual research opportunities, the implications of which stretch far beyond islands. Molecular tools and increasing data acquisition now permit re-assessment of some fundamental issues that interested MacArthur and Wilson. These include the formation of ecological networks, species abundance distributions, and the contribution of evolution to community assembly. We also extend our prospects to other fields of ecology and evolution - understanding ecosystem functioning, speciation and diversification - frequently employing assets of oceanic islands in inferring the geographic area within which evolution has occurred, and potential barriers to gene flow. Although island-based theory is continually being enriched, incorporating non-equilibrium dynamics is identified as a major challenge for the future. © 2014 John Wiley & Sons Ltd/CNRS.

33 CFR 80.750 - Sanibel Island, FL to St. Petersburg, FL.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Sanibel Island, FL to St... SECURITY INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Gulf Coast § 80.750 Sanibel Island, FL to..., between Captiva Island and Sanibel Island, and lines drawn across Redfish and Captiva Passes parallel to...

Complex Pattern Formation from Current-Driven Dynamics of Single-Layer Homoepitaxial Islands on Crystalline Conducting Substrates

NASA Astrophysics Data System (ADS)

Kumar, Ashish; Dasgupta, Dwaipayan; Maroudas, Dimitrios

2017-07-01

We report a systematic study of complex pattern formation resulting from the driven dynamics of single-layer homoepitaxial islands on surfaces of face-centered-cubic (fcc) crystalline conducting substrates under the action of an externally applied electric field. The analysis is based on an experimentally validated nonlinear model of mass transport via island edge atomic diffusion, which also accounts for edge diffusional anisotropy. We analyze the morphological stability and simulate the field-driven evolution of rounded islands for an electric field oriented along the fast edge diffusion direction. For larger-than-critical island sizes on {110 } and {100 } fcc substrates, we show that multiple necking instabilities generate complex island patterns, including not-simply-connected void-containing islands mediated by sequences of breakup and coalescence events and distributed symmetrically with respect to the electric field direction. We analyze the dependence of the formed patterns on the original island size and on the duration of application of the external field. Starting from a single large rounded island, we characterize the evolution of the number of daughter islands and their average size and uniformity. The evolution of the average island size follows a universal power-law scaling relation, and the evolution of the total edge length of the islands in the complex pattern follows Kolmogorov-Johnson-Mehl-Avrami kinetics. Our study makes a strong case for the use of electric fields, as precisely controlled macroscopic forcing, toward surface patterning involving complex nanoscale features.

MMS Observations of Ion-Scale Magnetic Island in the Magnetosheath Turbulent Plasma

NASA Technical Reports Server (NTRS)

Huang, S. Y.; Sahraoui, F.; Retino, A.; Contel, O. Le; Yuan, Z. G.; Chasapis, A.; Aunai, N.; Breuillard, H.; Deng, X. H.; Zhou, M.;

76 FR 73513 - Fisheries of the Exclusive Economic Zone Off Alaska; Revisions to Pacific Cod Fishing in the...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-29

... miles of shore adjacent to the Bering Sea and Aleutian Islands management area (BSAI). The affected... Cod Fishing in the Parallel Fishery in the Bering Sea and Aleutian Islands Management Area AGENCY... limits access by Federally permitted vessels to the parallel fishery for Pacific cod in three ways. First...

Ordering mechanisms of periodic stripe arrays on boron-doped Si(100)

NASA Astrophysics Data System (ADS)

Ermanoski, Ivan; Kellogg, Gary; Bartelt, Norman

2009-03-01

We have used low energy electron microscopy to determine the factors that control the degree of order in self-assembled periodic stripe arrays on the atomically flat Si(100) with high boron doping. The stripes consist of extremely elongated vacancy islands of single atomic height, formed at ˜900C, confined in micrometer-sized pits. ``Perfect'' arrays of parallel stripes (in pits of up to ˜10um in size) were formed by allowing various defects to heal over relatively long periods of time. Sublimation was compensated for by an external Si doser, allowing observation of stripe evolution over the course of hours, with no net loss or gain of Si from the area of interest. Stripe formation and ordering mechanisms include spontaneous nucleation and growth of new islands, longitudinal splitting, as well as coarsening due to surface diffusion. Stripe periodicity depends on temperature, allowing for control of this property. Stripes are stable in a range of ˜100C, outside of which they assume the familiar shape of elongated islands, shaped by the anisotropy in step energy. Stripe order can be preserved to room temperature by quenching. References: [1] J.-F. Nielsen et al., Appl. Phys. Lett. 79 (2001) 3857

Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture.

PubMed

Jinam, Timothy A; Phipps, Maude E; Aghakhanian, Farhang; Majumder, Partha P; Datar, Francisco; Stoneking, Mark; Sawai, Hiromi; Nishida, Nao; Tokunaga, Katsushi; Kawamura, Shoji; Omoto, Keiichi; Saitou, Naruya

2017-08-01

Human presence in Southeast Asia dates back to at least 40,000 years ago, when the current islands formed a continental shelf called Sundaland. In the Philippine Islands, Peninsular Malaysia, and Andaman Islands, there exist indigenous groups collectively called Negritos whose ancestry can be traced to the "First Sundaland People." To understand the relationship between these Negrito groups and their demographic histories, we generated genome-wide single nucleotide polymorphism data in the Philippine Negritos and compared them with existing data from other populations. Phylogenetic tree analyses show that Negritos are basal to other East and Southeast Asians, and that they diverged from West Eurasians at least 38,000 years ago. We also found relatively high traces of Denisovan admixture in the Philippine Negritos, but not in the Malaysian and Andamanese groups, suggesting independent introgression and/or parallel losses involving Denisovan introgressed regions. Shared genetic loci between all three Negrito groups could be related to skin pigmentation, height, facial morphology and malarial resistance. These results show the unique status of Negrito groups as descended from the First Sundaland People. © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Prediction of barrier island restoration response and its interactions with the natural environment

NASA Astrophysics Data System (ADS)

Plant, N. G.; Stockdon, H. F.; Flocks, J.; Sallenger, A. H.; Long, J. W.; Cormier, J. M.; Guy, K.; Thompson, D. M.

2012-12-01

A 2-meter high sand berm was constructed along Chandeleur Island, Louisiana, in an attempt to provide protection against the Deepwater Horizon oil spill. Berm construction started in June 2010 and ended in April 2011. Variations in both island morphology and construction of the 15-km long berm resulted in the development of four different morphologies: a berm built on a submerged island platform to the north of the existing island, a berm built seaward of the existing island, a berm built along the island shoreline, and portions of the island where no berm was constructed. These different morphologies provide a natural laboratory for testing the understanding of berm and barrier island response to storms. In particular, the ability to predict berm evolution using statistical modeling of the interactions between the island, berm, and oceanographic processes was tested. This particular test was part of a broader USGS research effort to understand processes that bridge the gap between short-term storm response and longer-term geologic and climate interactions that shape barrier-island systems. Berm construction and subsequent berm and island evolution were monitored using satellite and aerial remote sensing and topographic and bathymetric surveys. To date, significant berm evolution occurred in both the north (including terminal erosion, overwash, and a large breach), center (overwash and numerous breaches), and south (overwash). The response of the central portion of the berm to winter and tropical storms was significant such that none of the residual berm remained within its construction footprint. The evolution of the central portion of the berm was well predicted using a statistical modeling approach that used predicted and modeled wave conditions to identify the likelihood of overwash events. Comparison of different modeled evolution scenarios to the one that was observed showed that berm response was sensitive to the frequency and severity of winter and tropical storms. These findings demonstrate an observation and modeling approach that can be applied to understanding and managing other natural and restored barrier islands.

Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates.

PubMed

Fleischer, R C; McIntosh, C E; Tarr, C L

1998-04-01

The Hawaiian Islands form as the Pacific Plate moves over a 'hot spot' in the earth's mantle where magma extrudes through the crust to build huge shield volcanos. The islands subside and erode as the plate carries them to the north-west, eventually to become coral atolls and seamounts. Thus islands are ordered linearly by age, with the oldest islands in the north-west (e.g. Kauai at 5.1 Ma) and the youngest in the south-east (e.g. Hawaii at 0.43 Ma). K-Ar estimates of the date of an island's formation provide a maximum age for the taxa inhabiting the island. These ages can be used to calibrate rates of molecular change under the following assumptions: (i) K-Ar dates are accurate; (ii) tree topologies show that derivation of taxa parallels the timing of island formation; (iii) populations do not colonize long after island emergence; (iv) the coalescent point for sister taxa does not greatly predate the formation of the colonized younger island; (v) saturation effects and (vi) among-lineage rate variation are minimal or correctable; and (vii) unbiased standard errors of distances and regressions can be estimated from multiple pairwise comparisons. We use the approach to obtain overall corrected rate calibrations for: (i) part of the mitochondrial cytochrome b gene in Hawaiian drepanidines (0.016 sequence divergence/Myr); (ii) the Yp1 gene in Hawaiian Drosophila (0.019/Myr Kambysellis et al. 1995); and (iii) parts of the mitochondrial 12S and 16S rRNA and tRNAval in Laupala crickets (0.024-0.102/Myr, Shaw 1996). We discuss the reliability of the estimates given the assumptions (i-vii) above and contrast the results with previous calibrations of Adh in Hawaiian Drosophila and chloroplast DNA in lobeliods.

Plant-pollinator interactions and floral convergence in two species of Heliconia from the Caribbean Islands.

PubMed

Martén-Rodríguez, Silvana; Kress, W John; Temeles, Ethan J; Meléndez-Ackerman, Elvia

2011-12-01

Variation in interspecific interactions across geographic space is a potential driver of diversification and local adaptation. This study quantitatively examined variation in floral phenotypes and pollinator service of Heliconia bihai and H. caribaea across three Antillean islands. The prediction was that floral characters would correspond to the major pollinators of these species on each island. Analysis of floral phenotypes revealed convergence among species and populations of Heliconia from the Greater Antilles. All populations of H. caribaea were similar, characterized by long nectar chambers and short corolla tubes. In contrast, H. bihai populations were strongly divergent: on Dominica, H. bihai had flowers with short nectar chambers and long corollas, whereas on Hispaniola, H. bihai flowers resembled those of H. caribaea with longer nectar chambers and shorter corolla tubes. Morphological variation in floral traits corresponded with geographic differences or similarities in the major pollinators on each island. The Hispaniolan mango, Anthracothorax dominicus, is the principal pollinator of both H. bihai and H. caribaea on Hispaniola; thus, the similarity of floral phenotypes between Heliconia species suggests parallel selective regimes imposed by the principal pollinator. Likewise, divergence between H. bihai populations from Dominica and Hispaniola corresponded with differences in the pollinators visiting this species on the two islands. The study highlights the putative importance of pollinator-mediated selection as driving floral convergence and the evolution of locally-adapted plant variants across a geographic mosaic of pollinator species.

The island dynamics model on parallel quadtree grids

NASA Astrophysics Data System (ADS)

Mistani, Pouria; Guittet, Arthur; Bochkov, Daniil; Schneider, Joshua; Margetis, Dionisios; Ratsch, Christian; Gibou, Frederic

2018-05-01

We introduce an approach for simulating epitaxial growth by use of an island dynamics model on a forest of quadtree grids, and in a parallel environment. To this end, we use a parallel framework introduced in the context of the level-set method. This framework utilizes: discretizations that achieve a second-order accurate level-set method on non-graded adaptive Cartesian grids for solving the associated free boundary value problem for surface diffusion; and an established library for the partitioning of the grid. We consider the cases with: irreversible aggregation, which amounts to applying Dirichlet boundary conditions at the island boundary; and an asymmetric (Ehrlich-Schwoebel) energy barrier for attachment/detachment of atoms at the island boundary, which entails the use of a Robin boundary condition. We provide the scaling analyses performed on the Stampede supercomputer and numerical examples that illustrate the capability of our methodology to efficiently simulate different aspects of epitaxial growth. The combination of adaptivity and parallelism in our approach enables simulations that are several orders of magnitude faster than those reported in the recent literature and, thus, provides a viable framework for the systematic study of mound formation on crystal surfaces.

Genetics of Rapid and Extreme Size Evolution in Island Mice

PubMed Central

Gray, Melissa M.; Parmenter, Michelle D.; Hogan, Caley A.; Ford, Irene; Cuthbert, Richard J.; Ryan, Peter G.; Broman, Karl W.; Payseur, Bret A.

2015-01-01

Organisms on islands provide a revealing window into the process of adaptation. Populations that colonize islands often evolve substantial differences in body size from their mainland relatives. Although the ecological drivers of this phenomenon have received considerable attention, its genetic basis remains poorly understood. We use house mice (subspecies: Mus musculus domesticus) from remote Gough Island to provide a genetic portrait of rapid and extreme size evolution. In just a few hundred generations, Gough Island mice evolved the largest body size among wild house mice from around the world. Through comparisons with a smaller-bodied wild-derived strain from the same subspecies (WSB/EiJ), we demonstrate that Gough Island mice achieve their exceptional body weight primarily by growing faster during the 6 weeks after birth. We use genetic mapping in large F2 intercrosses between Gough Island mice and WSB/EiJ to identify 19 quantitative trait loci (QTL) responsible for the evolution of 16-week weight trajectories: 8 QTL for body weight and 11 QTL for growth rate. QTL exhibit modest effects that are mostly additive. We conclude that body size evolution on islands can be genetically complex, even when substantial size changes occur rapidly. In comparisons to published studies of laboratory strains of mice that were artificially selected for divergent body sizes, we discover that the overall genetic profile of size evolution in nature and in the laboratory is similar, but many contributing loci are distinct. Our results underscore the power of genetically characterizing the entire growth trajectory in wild populations and lay the foundation necessary for identifying the mutations responsible for extreme body size evolution in nature. PMID:26199233

Genetics of Rapid and Extreme Size Evolution in Island Mice.

PubMed

Gray, Melissa M; Parmenter, Michelle D; Hogan, Caley A; Ford, Irene; Cuthbert, Richard J; Ryan, Peter G; Broman, Karl W; Payseur, Bret A

2015-09-01

Organisms on islands provide a revealing window into the process of adaptation. Populations that colonize islands often evolve substantial differences in body size from their mainland relatives. Although the ecological drivers of this phenomenon have received considerable attention, its genetic basis remains poorly understood. We use house mice (subspecies: Mus musculus domesticus) from remote Gough Island to provide a genetic portrait of rapid and extreme size evolution. In just a few hundred generations, Gough Island mice evolved the largest body size among wild house mice from around the world. Through comparisons with a smaller-bodied wild-derived strain from the same subspecies (WSB/EiJ), we demonstrate that Gough Island mice achieve their exceptional body weight primarily by growing faster during the 6 weeks after birth. We use genetic mapping in large F(2) intercrosses between Gough Island mice and WSB/EiJ to identify 19 quantitative trait loci (QTL) responsible for the evolution of 16-week weight trajectories: 8 QTL for body weight and 11 QTL for growth rate. QTL exhibit modest effects that are mostly additive. We conclude that body size evolution on islands can be genetically complex, even when substantial size changes occur rapidly. In comparisons to published studies of laboratory strains of mice that were artificially selected for divergent body sizes, we discover that the overall genetic profile of size evolution in nature and in the laboratory is similar, but many contributing loci are distinct. Our results underscore the power of genetically characterizing the entire growth trajectory in wild populations and lay the foundation necessary for identifying the mutations responsible for extreme body size evolution in nature. Copyright © 2015 by the Genetics Society of America.

Unexpected Convergent Evolution of Nasal Domes between Pleistocene Bovids and Cretaceous Hadrosaur Dinosaurs.

PubMed

O'Brien, Haley D; Faith, J Tyler; Jenkins, Kirsten E; Peppe, Daniel J; Plummer, Thomas W; Jacobs, Zenobia L; Li, Bo; Joannes-Boyau, Renaud; Price, Gilbert; Feng, Yue-Xing; Tryon, Christian A

2016-02-22

The fossil record provides tangible, historical evidence for the mode and operation of evolution across deep time. Striking patterns of convergence are some of the strongest examples of these operations, whereby, over time, similar environmental and/or behavioral pressures precipitate similarity in form and function between disparately related taxa. Here we present fossil evidence for an unexpected convergence between gregarious plant-eating mammals and dinosaurs. Recent excavations of Late Pleistocene deposits on Rusinga Island, Kenya, have uncovered a catastrophic assemblage of the wildebeest-like bovid Rusingoryx atopocranion. Previously known from fragmentary material, these new specimens reveal large, hollow, osseous nasal crests: a craniofacial novelty for mammals that is remarkably comparable to the nasal crests of lambeosaurine hadrosaur dinosaurs. Using adult and juvenile material from this assemblage, as well as computed tomographic imaging, we investigate this convergence from morphological, developmental, functional, and paleoenvironmental perspectives. Our detailed analyses reveal broad parallels between R. atopocranion and basal Lambeosaurinae, suggesting that osseous nasal crests may require a highly specific combination of ontogeny, evolution, and environmental pressures in order to develop. Copyright © 2016 Elsevier Ltd. All rights reserved.

The Evolution of Floreana Island, Galapagos: Mantle Metasomatism as a Control of Structural and Geochemical Variations

NASA Astrophysics Data System (ADS)

Koleszar, A. M.; Rollins, N. A.; Harpp, K. S.; Geist, D. J.

2004-05-01

Floreana, the 6th largest island in the Galapagos Archipelago, is situated ESE of the current proposed location of the hotspot, believed to be near Fernandina Island. Floreana is the most distant Galapagos volcano from the Galapagos Spreading Center and is located on 12 Ma lithosphere. Both normally- and reversely-polarized flows are present on Floreana, which emerged more than 1 Ma. The emergent shield is constructed of lava flows and >80 cinder cones. In the final stage of island building, approximately 0.3 Ma, the eruptive activity on Floreana became more explosive and produced the largest cinder cones on the island. Spatter ramparts, cinder cones, vents, and pit craters are arranged in at least 3 major parallel to sub-parallel alignments oriented N40E. The basalts of Floreana are notably alkalic, primitive, and highly enriched in incompatible trace elements (ITE). MgO concentrations in the lavas range from <8 wt% to >13 wt%, and many of the magmas are likely related by fractional crystallization of olivine and clinopyroxene. The volcano has erupted ultramafic xenoliths, which are observed predominantly in the older, reversely-polarized flows and cones. Floreana lavas have the greatest light REE enrichment observed in the archipelago and the most radiogenic Sr- and Pb- isotopic ratios, indicative of an ITE-enriched source. Elevated ratios of alkali and alkaline earth contents to those of high-field strength elements indicate contributions from metasomatic fluids to Floreana melts. Although the effects of metasomatism are apparent in most Floreana basalts, normally-polarized lavas may have been affected to a greater extent by the metasomatism than the older flows. Temporal-compositional trends in trace element concentrations also suggest that the depth of melt generation may have decreased slightly over the course of the island's formation. Floreana is distinct from the rest of the Galapagos Archipelago in its explosive history, abundant mantle xenoliths, extensive evidence for contributions from metasomatic fluids, and ITE-enriched composition of its mantle source. We propose that the ubiquitous metasomatic processes may be responsible for both the structural and geochemical anomalies observed on Floreana and may be the primary distinguishing characteristic of this end-member in Galapagos mantle plume compositions.

EON: software for long time simulations of atomic scale systems

NASA Astrophysics Data System (ADS)

Chill, Samuel T.; Welborn, Matthew; Terrell, Rye; Zhang, Liang; Berthet, Jean-Claude; Pedersen, Andreas; Jónsson, Hannes; Henkelman, Graeme

2014-07-01

The EON software is designed for simulations of the state-to-state evolution of atomic scale systems over timescales greatly exceeding that of direct classical dynamics. States are defined as collections of atomic configurations from which a minimization of the potential energy gives the same inherent structure. The time evolution is assumed to be governed by rare events, where transitions between states are uncorrelated and infrequent compared with the timescale of atomic vibrations. Several methods for calculating the state-to-state evolution have been implemented in EON, including parallel replica dynamics, hyperdynamics and adaptive kinetic Monte Carlo. Global optimization methods, including simulated annealing, basin hopping and minima hopping are also implemented. The software has a client/server architecture where the computationally intensive evaluations of the interatomic interactions are calculated on the client-side and the state-to-state evolution is managed by the server. The client supports optimization for different computer architectures to maximize computational efficiency. The server is written in Python so that developers have access to the high-level functionality without delving into the computationally intensive components. Communication between the server and clients is abstracted so that calculations can be deployed on a single machine, clusters using a queuing system, large parallel computers using a message passing interface, or within a distributed computing environment. A generic interface to the evaluation of the interatomic interactions is defined so that empirical potentials, such as in LAMMPS, and density functional theory as implemented in VASP and GPAW can be used interchangeably. Examples are given to demonstrate the range of systems that can be modeled, including surface diffusion and island ripening of adsorbed atoms on metal surfaces, molecular diffusion on the surface of ice and global structural optimization of nanoparticles.

Reverse engineering a gene network using an asynchronous parallel evolution strategy

PubMed Central

2010-01-01

Background The use of reverse engineering methods to infer gene regulatory networks by fitting mathematical models to gene expression data is becoming increasingly popular and successful. However, increasing model complexity means that more powerful global optimisation techniques are required for model fitting. The parallel Lam Simulated Annealing (pLSA) algorithm has been used in such approaches, but recent research has shown that island Evolutionary Strategies can produce faster, more reliable results. However, no parallel island Evolutionary Strategy (piES) has yet been demonstrated to be effective for this task. Results Here, we present synchronous and asynchronous versions of the piES algorithm, and apply them to a real reverse engineering problem: inferring parameters in the gap gene network. We find that the asynchronous piES exhibits very little communication overhead, and shows significant speed-up for up to 50 nodes: the piES running on 50 nodes is nearly 10 times faster than the best serial algorithm. We compare the asynchronous piES to pLSA on the same test problem, measuring the time required to reach particular levels of residual error, and show that it shows much faster convergence than pLSA across all optimisation conditions tested. Conclusions Our results demonstrate that the piES is consistently faster and more reliable than the pLSA algorithm on this problem, and scales better with increasing numbers of nodes. In addition, the piES is especially well suited to further improvements and adaptations: Firstly, the algorithm's fast initial descent speed and high reliability make it a good candidate for being used as part of a global/local search hybrid algorithm. Secondly, it has the potential to be used as part of a hierarchical evolutionary algorithm, which takes advantage of modern multi-core computing architectures. PMID:20196855

Monitoring and Modelling the Evolution of the Hunga Tonga Hunga Ha'apai (Kingdom of Tonga) Volcanic Island by means of Satellite Remote Sensing

NASA Astrophysics Data System (ADS)

Slayback, D. A.; Garvin, J. B.; Asrar, G.; Ferrini, V. L.; Giguere, C.

2016-12-01

The surtseyan eruption that formed the Hunga Tonga Hunga Ha'apai (HTHH) volcanic island in the Kingdom of Tonga between late Dec 2014 and the end of Jan 2015 produced a 133m tall tephra cone with flanking pyroclastic flows with a land area similar to that of Surtsey (Iceland). With the advent of sub-meter resolution satellite imaging systems employing both optical and microwave (radar) wavelengths, we have quantitatively documented the post-eruptive evolution of the new island on a monthly basis since Feb 2015 via DigitalGlobe WorldView and Canadian Space Agency Radarsat-2 satellites, resulting in an unprecedented time-series of measurements of the island's surface area, volume, and landscapes. Our results have documented the rapid subaerial evolution of the new island, with a current mean loss of island volume of 12.2% per year. On the basis of the time series of visible images from WorldView and the C-band Spotlight SAR images from Radarsat-2, we developed a first-order evolutionary model for the apparently-tephra dominated island, and compared this to the 53 year evolution of Surtsey. Because the HTHH island is adjacent to two pre-existing islands that form part of the rim of a submarine caldera, the loss of land from the southern coast over its first 5 months resulted in the development of an accretionay spit that connected it to the Hunga Tonga island to the NE, limiting the overall pace of subaerial coastline loss. With marine abrasion accentuated on the southern side of the island, and breaching of the interior crater (lake) of the primary tephra cone, the projected lifetime of the island is likely to be far less than Surtsey, which is protected by palagonitized tephra. From our volume and coast-line measurements, the projected lifetime of the island is likely to fall between 7.5 yrs (shortest) and 70 years, dependent on whether any of the interior deposits forming the primary edifice have been palagoinitized to resist marine abrasion and mass wasting. This is in contract to Surtsey, where a lifetime of more than 1000 years is projected. Connecting the subaerial evolution of the present HTHH island to that of the submarine topography associated with its base is an essential aspect of the evolution of HTHH and V. Ferrini and team have produced that critical dataset via their R/V Falkor (SOI) mapping mission in May of 2016.

33 CFR 80.748 - Cape Romano, FL to Sanibel Island, FL.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Cape Romano, FL to Sanibel Island... Sanibel Island, FL. (a) A line drawn across Big Marco Pass parallel to the general trend of the seaward, highwater shoreline. (b) A line drawn from the northwesternmost extremity of Coconut Island 000°T across...

33 CFR 80.748 - Cape Romano, FL to Sanibel Island, FL.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Cape Romano, FL to Sanibel Island... Sanibel Island, FL. (a) A line drawn across Big Marco Pass parallel to the general trend of the seaward, highwater shoreline. (b) A line drawn from the northwesternmost extremity of Coconut Island 000°T across...

33 CFR 80.748 - Cape Romano, FL to Sanibel Island, FL.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Cape Romano, FL to Sanibel Island... Sanibel Island, FL. (a) A line drawn across Big Marco Pass parallel to the general trend of the seaward, highwater shoreline. (b) A line drawn from the northwesternmost extremity of Coconut Island 000°T across...

33 CFR 80.748 - Cape Romano, FL to Sanibel Island, FL.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Cape Romano, FL to Sanibel Island... Sanibel Island, FL. (a) A line drawn across Big Marco Pass parallel to the general trend of the seaward, highwater shoreline. (b) A line drawn from the northwesternmost extremity of Coconut Island 000°T across...

33 CFR 80.748 - Cape Romano, FL to Sanibel Island, FL.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Cape Romano, FL to Sanibel Island... Sanibel Island, FL. (a) A line drawn across Big Marco Pass parallel to the general trend of the seaward, highwater shoreline. (b) A line drawn from the northwesternmost extremity of Coconut Island 000°T across...

Ecological specialization and morphological diversification in Greater Antillean boas.

PubMed

Reynolds, R Graham; Collar, David C; Pasachnik, Stesha A; Niemiller, Matthew L; Puente-Rolón, Alberto R; Revell, Liam J

2016-08-01

Colonization of islands can dramatically influence the evolutionary trajectories of organisms, with both deterministic and stochastic processes driving adaptation and diversification. Some island colonists evolve extremely large or small body sizes, presumably in response to unique ecological circumstances present on islands. One example of this phenomenon, the Greater Antillean boas, includes both small (<90 cm) and large (4 m) species occurring on the Greater Antilles and Bahamas, with some islands supporting pairs or trios of body-size divergent species. These boas have been shown to comprise a monophyletic radiation arising from a Miocene dispersal event to the Greater Antilles, though it is not known whether co-occurrence of small and large species is a result of dispersal or in situ evolution. Here, we provide the first comprehensive species phylogeny for this clade combined with morphometric and ecological data to show that small body size evolved repeatedly on separate islands in association with specialization in substrate use. Our results further suggest that microhabitat specialization is linked to increased rates of head shape diversification among specialists. Our findings show that ecological specialization following island colonization promotes morphological diversity through deterministic body size evolution and cranial morphological diversification that is contingent on island- and species-specific factors. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

The Subglacial Drainage Patterns of Devon Island, Canada

NASA Astrophysics Data System (ADS)

Grau Galofre, A.; Jellinek, M.; Osinski, G. R.

2016-12-01

Meltwater drainage patterns incised underneath ice masses can appear strikingly similar to fluvially dissected landscapes. We introduce a landscape evolution model to describe the longitudinal profiles of subglacial meltwater channels (tunnel valleys).We propose a way to identify them from topography data and imagery on the basis of the vertical scale of undulations compared to the total elevation gain. We test the model with field data from tunnel valleys exposed in Devon Island, NU, Canada. We use field measurements of longitudinal profiles, photogrammetry and 3D LIDAR to establish a quantitative comparison of tunnel valleys and fluvial channels. Tunnel valleys are oriented parallel to former ice flow lines and are characterized by undulating longitudinal profiles. We use these features to identify quantitatively tunnel valleys in central Devon Island (figure 1). We ground truth our observations with imagery of tunnel valleys appearing at the edges of the actively retreating ice cap. Longitudinal profiles show undulations with amplitudes up to 14m over a total elevation gain of 20m and with wavelengths comparable to the channel width. These "overdeepenings" are not observed in any fluvial channels in the area and are consistent with expectations of flow driven by variations in ice thickness. Our identification scheme rigorously distinguishes fluvial and subglacial dissected landscapes.

Origin, adaptive radiation and diversification of the Hawaiian lobeliads (Asterales: Campanulaceae)

PubMed Central

Givnish, Thomas J.; Millam, Kendra C.; Mast, Austin R.; Paterson, Thomas B.; Theim, Terra J.; Hipp, Andrew L.; Henss, Jillian M.; Smith, James F.; Wood, Kenneth R.; Sytsma, Kenneth J.

2008-01-01

The endemic Hawaiian lobeliads are exceptionally species rich and exhibit striking diversity in habitat, growth form, pollination biology and seed dispersal, but their origins and pattern of diversification remain shrouded in mystery. Up to five independent colonizations have been proposed based on morphological differences among extant taxa. We present a molecular phylogeny showing that the Hawaiian lobeliads are the product of one immigration event; that they are the largest plant clade on any single oceanic island or archipelago; that their ancestor arrived roughly 13 Myr ago; and that this ancestor was most likely woody, wind-dispersed, bird-pollinated, and adapted to open habitats at mid-elevations. Invasion of closed tropical forests is associated with evolution of fleshy fruits. Limited dispersal of such fruits in wet-forest understoreys appears to have accelerated speciation and led to a series of parallel adaptive radiations in Cyanea, with most species restricted to single islands. Consistency of Cyanea diversity across all tall islands except Hawai `i suggests that diversification of Cyanea saturates in less than 1.5 Myr. Lobeliad diversity appears to reflect a hierarchical adaptive radiation in habitat, then elevation and flower-tube length, and provides important insights into the pattern and tempo of diversification in a species-rich clade of tropical plants. PMID:18854299

Refining the link between the Holocene development of the Mississippi River Delta and the geologic evolution of Cat Island, MS: implications for delta-associated barrier islands

USGS Publications Warehouse

Miselis, Jennifer L.; Buster, Noreen A.; Kindinger, Jack G.

2014-01-01

The geologic evolution of barrier islands is profoundly influenced by the nature of the deposits underlying them. Many researchers have speculated on the origin and evolution of Cat Island in Mississippi, but uncertainty remains about whether or not the island is underlain completely or in part by deposits associated with the past growth of the Mississippi River delta. In part, this is due to a lack of comprehensive geological information offshore of the island that could augment previous stratigraphic interpretations based on terrestrial borings. An extensive survey of Cat Island and its surrounding waters was conducted, including shallow-water geophysics (e.g., high-resolution chirp seismic, side-scan sonar, and swath and single-beam bathymetry) and both terrestrial and marine vibracoring. High-resolution seismic data and vibracores from south and east of the island show two horizontally laminated silt units; marine radiocarbon dates indicate that they are St. Bernard delta complex (SBDC) deposits. Furthermore, seismic data reveal that the SBDC deposits taper off toward the southern shoreline of Cat Island and to the west, morphology consistent with the distal edge of a delta complex. The sedimentology and extent of each unit suggest that the lower unit may have been deposited during an earlier period of continuous river flow while the upper unit may represent reduced or sporadic river flow. OSL dates from the island platform (beneath beach ridge complexes) indicate three stages of terrestrial evolution: island emergence resulting from relative sea-level rise (~ 5400 ybp) island aggradation via littoral transport (~ 2500–4000 ybp) and island degradation due to delta-mediated changes in wave direction (present– ~ 3600 ybp). Finally, the combination of terrestrial and marine data shows that portions of Cat Island that are lower in elevation than the central part of the island are younger and are likely underlain by a thin layer of deltaic sediments. This underscores the potential for increased future vulnerability of barrier islands that develop adjacent to major river delta complexes.

Variation of River Islands around a Large City along the Yangtze River from Satellite Remote Sensing Images

PubMed Central

Shi, Haiyun; Gao, Chao; Dong, Changming; Xia, Changshui; Xu, Guanglai

2017-01-01

River islands are sandbars formed by scouring and silting. Their evolution is affected by several factors, among which are runoff and sediment discharge. The spatial-temporal evolution of seven river islands in the Nanjing Section of the Yangtze River of China was examined using TM (Thematic Mapper) and ETM (Enhanced Thematic Mapper)+ images from 1985 to 2015 at five year intervals. The following approaches were applied in this study: the threshold value method, binarization model, image registration, image cropping, convolution and cluster analysis. Annual runoff and sediment discharge data as measured at the Datong hydrological station upstream of Nanjing section were also used to determine the roles and impacts of various factors. The results indicated that: (1) TM/ETM+ images met the criteria of information extraction of river islands; (2) generally, the total area of these islands in this section and their changing rate decreased over time; (3) sediment and river discharge were the most significant factors in island evolution. They directly affect river islands through silting or erosion. Additionally, anthropocentric influences could play increasingly important roles. PMID:28953218

The Mentawai forearc sliver off Sumatra: A model for a strike-slip duplex at a regional scale

NASA Astrophysics Data System (ADS)

Berglar, Kai; Gaedicke, Christoph; Ladage, Stefan; Thöle, Hauke

2017-07-01

At the Sumatran oblique convergent margin the Mentawai Fault and Sumatran Fault zones accommodate most of the trench parallel component of strain. These faults bound the Mentawai forearc sliver that extends from the Sunda Strait to the Nicobar Islands. Based on multi-channel reflection seismic data, swath bathymetry and high resolution sub-bottom profiling we identified a set of wrench faults obliquely connecting the two major fault zones. These wrench faults separate at least four horses of a regional strike-slip duplex forming the forearc sliver. Each horse comprises an individual basin of the forearc with differing subsidence and sedimentary history. Duplex formation started in Mid/Late Miocene southwest of the Sunda Strait. Initiation of new horses propagated northwards along the Sumatran margin over 2000 km until Early Pliocene. These results directly link strike-slip tectonics to forearc evolution and may serve as a model for basin evolution in other oblique subduction settings.

Predicting geomorphic evolution through integration of numerical-model scenarios and topographic/bathymetric-survey updates

NASA Astrophysics Data System (ADS)

Plant, N. G.; Long, J.; Dalyander, S.; Thompson, D.; Miselis, J. L.

2013-12-01

Natural resource and hazard management of barrier islands requires an understanding of geomorphic changes associated with long-term processes and storms. Uncertainty exists in understanding how long-term processes interact with the geomorphic changes caused by storms and the resulting perturbations of the long-term evolution trajectories. We use high-resolution data sets to initialize and correct high-fidelity numerical simulations of oceanographic forcing and resulting barrier island evolution. We simulate two years of observed storms to determine the individual and cumulative impacts of these events. Results are separated into cross-shore and alongshore components of sediment transport and compared with observed topographic and bathymetric changes during these time periods. The discrete island change induced by these storms is integrated with previous knowledge of long-term net alongshore sediment transport to project island evolution. The approach has been developed and tested using data collected at the Chandeleur Island chain off the coast of Louisiana (USA). The simulation time period included impacts from tropical and winter storms, as well as a human-induced perturbation associated with construction of a sand berm along the island shoreline. The predictions and observations indicated that storm and long-term processes both contribute to the migration, lowering, and disintegration of the artificial berm and natural island. Further analysis will determine the relative importance of cross-shore and alongshore sediment transport processes and the dominant time scales that drive each of these processes and subsequent island morphologic response.

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species.

PubMed

Emms, David M; Covshoff, Sarah; Hibberd, Julian M; Kelly, Steven

2016-07-01

C4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes is enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Furthermore, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species. C4 photosynthesis, gene duplication, gene families, parallel evolution. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Landscapes and environments on the island of Ouessant, Brittany, France: From traditional maintenance to the management of abandoned areas

NASA Astrophysics Data System (ADS)

Brigand, Louis; Bioret, Frédéric; Le Démezet, Maurice

1992-09-01

For about 50 years the desertion of areas by traditional activities has led to an important evolution of landscapes and environments on the island of Ouessant. The study of this evolution has been undertaken at different spatial and temporal scales. On one part of the island, a scientific investigation carried out at the scale of the parcel enabled the form of the landscape in 1850 to be compared with that of 1985. On the whole island, the evolution of spatial organization and land use was compared between 1950 and 1985. For each of three main ecological environments, vegetational successions after the decrease of agriculture have been studied along with their future potential changes. This work highlights some considerations about the present management of the environment in relation to the major objectives of island environmental policies.

Tectonic map of Indonesia: A progress report

USGS Publications Warehouse

Hamilton, Warren Bell

1970-01-01

Orogeny, volcanism, and seismicity are now intensely active in Indonesia. Many Dutch tectonists--Brouwer, Umbgrove, van Bemifielen, Smit4Sibinga, Vening Meinesz, Westerveld, and others--recognized that this complex cluster of islands represents an early stage in the evolution of orogenic belts. Not until Indonesia is understood can we comprehend the Alps. This report summarizes some aspects of work to date on the Tectonic Map of Indonesia. The preparation of this map is a joint project of the Geological Survey of Indonesia and the United States Geological Survey, sponsored by the Government of Indonesia and the United States Agency for International Development. The Tectonic Map of Indonesia will be published at a scale of 1:5,000,000. Adjacent regions in other countries will be included to provide a broader context. The map limits presently envisaged are the parallels of 12° N. and 15° S., and the meridians of 91° and 148° E. Tectonic features will be shown in many colors and patterns. Bathymetry is being newly compiled, and will be shown with contours and shades of blue. Figure 1 shows the islands of Indonesia.

33 CFR 110.156 - Randall Bay, Freeport, Long Island, N.Y.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Island, N.Y. 110.156 Section 110.156 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Anchorage Grounds § 110.156 Randall Bay, Freeport, Long Island, N.Y. (a) The anchorage grounds. Southward of a line 312 feet south of and parallel to the south side...

33 CFR 110.156 - Randall Bay, Freeport, Long Island, N.Y.

Code of Federal Regulations, 2012 CFR

2012-07-01

... Island, N.Y. 110.156 Section 110.156 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Anchorage Grounds § 110.156 Randall Bay, Freeport, Long Island, N.Y. (a) The anchorage grounds. Southward of a line 312 feet south of and parallel to the south side...

33 CFR 110.156 - Randall Bay, Freeport, Long Island, N.Y.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Island, N.Y. 110.156 Section 110.156 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Anchorage Grounds § 110.156 Randall Bay, Freeport, Long Island, N.Y. (a) The anchorage grounds. Southward of a line 312 feet south of and parallel to the south side...

Islander: A database of precisely mapped genomic islands in tRNA and tmRNA genes

DOE PAGES

Hudson, Corey M.; Lau, Britney Y.; Williams, Kelly P.

2014-11-05

Genomic islands are mobile DNAs that are major agents of bacterial and archaeal evolution. Integration into prokaryotic chromosomes usually occurs site-specifically at tRNA or tmRNA gene (together, tDNA) targets, catalyzed by tyrosine integrases. This splits the target gene, yet sequences within the island restore the disrupted gene; the regenerated target and its displaced fragment precisely mark the endpoints of the island. We applied this principle to search for islands in genomic DNA sequences. Our algorithm identifies tDNAs, finds fragments of those tDNAs in the same replicon and removes unlikely candidate islands through a series of filters. A search for islandsmore » in 2168 whole prokaryotic genomes produced 3919 candidates. The website Islander (recently moved to http://bioinformatics.sandia.gov/islander/) presents these precisely mapped candidate islands, the gene content and the island sequence. The algorithm further insists that each island encode an integrase, and attachment site sequence identity is carefully noted; therefore, the database also serves in the study of integrase site-specificity and its evolution.« less

Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species

PubMed Central

Emms, David M.; Covshoff, Sarah; Hibberd, Julian M.; Kelly, Steven

2016-01-01

C4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes is enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Furthermore, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species. Key words: C4 photosynthesis, gene duplication, gene families, parallel evolution. PMID:27016024

Island colonisation and the evolutionary rates of body size in insular neonate snakes

PubMed Central

Aubret, F

2015-01-01

Island colonisation by animal populations is often associated with dramatic shifts in body size. However, little is known about the rates at which these evolutionary shifts occur, under what precise selective pressures and the putative role played by adaptive plasticity on driving such changes. Isolation time played a significant role in the evolution of body size in island Tiger snake populations, where adaptive phenotypic plasticity followed by genetic assimilation fine-tuned neonate body and head size (hence swallowing performance) to prey size. Here I show that in long isolated islands (>6000 years old) and mainland populations, neonate body mass and snout-vent length are tightly correlated with the average prey body mass available at each site. Regression line equations were used to calculate body size values to match prey size in four recently isolated populations of Tiger snakes. Rates of evolution in body mass and snout-vent length, calculated for seven island snake populations, were significantly correlated with isolation time. Finally, rates of evolution in body mass per generation were significantly correlated with levels of plasticity in head growth rates. This study shows that body size evolution occurs at a faster pace in recently isolated populations and suggests that the level of adaptive plasticity for swallowing abilities may correlate with rates of body mass evolution. I hypothesise that, in the early stages of colonisation, adaptive plasticity and directional selection may combine and generate accelerated evolution towards an ‘optimal' phenotype. PMID:25074570

Chirp subbottom profile data collected in 2015 from the northern Chandeleur Islands, Louisiana

USGS Publications Warehouse

Forde, Arnell S.; DeWitt, Nancy T.; Fredericks, Jake J.; Miselis, Jennifer L.

2018-01-30

As part of the Barrier Island Evolution Research project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted a nearshore geophysical survey around the northern Chandeleur Islands, Louisiana, in September 2015. The objective of the project is to improve the understanding of barrier island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual time scales (1–5 years). Collecting geophysical data can help researchers identify relations between the geologic history of the islands and their present day morphology and sediment distribution. High-resolution geophysical data collected along this rapidly changing barrier island system can provide a unique time-series dataset to further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over medium-term time scales (months to years). Subbottom profile data were collected in September 2015 offshore of the northern Chandeleur Islands, during USGS Field Activity Number 2015-331-FA. Data products, including raw digital chirp subbottom data, processed subbottom profile images, survey trackline map, navigation files, geographic information system data files and formal Federal Geographic Data Committee metadata, and Field Activity Collection System and operation logs are available for download.

Stratigraphic evolution of Chandeleur Islands, Louisiana

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suter, J.R.; Penland, S.; Williams, S.J.

1988-09-01

Analyses of over 3000 km of high-resolution seismic profiles, supplemented by vibracores and soil borings, illustrate the evolution of the Chandeleur Islands through transgressive processes associated with the abandonment of the St. Bernard complex of the Mississippi delta some 1500 years ago. Historical maps show that the system has been eroding, migrating landward, and losing area for the last 100 years. At current rates, the subaerial integrity of the islands will be terminated in about 200 years. Hurricane impacts accelerate erosion and segment the islands, followed by limited recovery during fair weather periods. Relative sea level rise from both subsidencemore » and possible eustatic factors contributes to the loss of island area.« less

Similar traits, different genes? Examining convergent evolution in related weedy rice populations

USDA-ARS?s Scientific Manuscript database

Convergent phenotypic evolution may or may not be associated with parallel genotypic evolution. Agricultural weeds have repeatedly been selected for weed-adaptive traits such as rapid growth, increased seed dispersal and dormancy, thus providing an ideal system for the study of parallel evolution. H...

Predictions of barrier island berm evolution in a time-varying storm climatology

USGS Publications Warehouse

Plant, Nathaniel G.; Flocks, James; Stockdon, Hilary F.; Long, Joseph W.; Guy, Kristy K.; Thompson, David M.; Cormier, Jamie M.; Smith, Christopher G.; Miselis, Jennifer L.; Dalyander, P. Soupy

2014-01-01

Low-lying barrier islands are ubiquitous features of the world's coastlines, and the processes responsible for their formation, maintenance, and destruction are related to the evolution of smaller, superimposed features including sand dunes, beach berms, and sandbars. The barrier island and its superimposed features interact with oceanographic forces (e.g., overwash) and exchange sediment with each other and other parts of the barrier island system. These interactions are modulated by changes in storminess. An opportunity to study these interactions resulted from the placement and subsequent evolution of a 2 m high sand berm constructed along the northern Chandeleur Islands, LA. We show that observed berm length evolution is well predicted by a model that was fit to the observations by estimating two parameters describing the rate of berm length change. The model evaluates the probability and duration of berm overwash to predict episodic berm erosion. A constant berm length change rate is also predicted that persists even when there is no overwash. The analysis is extended to a 16 year time series that includes both intraannual and interannual variability of overwash events. This analysis predicts that as many as 10 or as few as 1 day of overwash conditions would be expected each year. And an increase in berm elevation from 2 m to 3.5 m above mean sea level would reduce the expected frequency of overwash events from 4 to just 0.5 event-days per year. This approach can be applied to understanding barrier island and berm evolution at other locations using past and future storm climatologies.

Predictions of barrier island berm evolution in a time-varying storm climatology

NASA Astrophysics Data System (ADS)

Plant, Nathaniel G.; Flocks, James; Stockdon, Hilary F.; Long, Joseph W.; Guy, Kristy; Thompson, David M.; Cormier, Jamie M.; Smith, Christopher G.; Miselis, Jennifer L.; Dalyander, P. Soupy

2014-02-01

Low-lying barrier islands are ubiquitous features of the world's coastlines, and the processes responsible for their formation, maintenance, and destruction are related to the evolution of smaller, superimposed features including sand dunes, beach berms, and sandbars. The barrier island and its superimposed features interact with oceanographic forces (e.g., overwash) and exchange sediment with each other and other parts of the barrier island system. These interactions are modulated by changes in storminess. An opportunity to study these interactions resulted from the placement and subsequent evolution of a 2 m high sand berm constructed along the northern Chandeleur Islands, LA. We show that observed berm length evolution is well predicted by a model that was fit to the observations by estimating two parameters describing the rate of berm length change. The model evaluates the probability and duration of berm overwash to predict episodic berm erosion. A constant berm length change rate is also predicted that persists even when there is no overwash. The analysis is extended to a 16 year time series that includes both intraannual and interannual variability of overwash events. This analysis predicts that as many as 10 or as few as 1 day of overwash conditions would be expected each year. And an increase in berm elevation from 2 m to 3.5 m above mean sea level would reduce the expected frequency of overwash events from 4 to just 0.5 event-days per year. This approach can be applied to understanding barrier island and berm evolution at other locations using past and future storm climatologies.

Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems ▿†‡

PubMed Central

Makarova, Kira S.; Wolf, Yuri I.; Snir, Sagi; Koonin, Eugene V.

2011-01-01

The arms race between cellular life forms and viruses is a major driving force of evolution. A substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense. We analyzed the distribution of defense genes and typical mobilome components (such as viral and transposon genes) in bacterial and archaeal genomes and demonstrated statistically significant clustering of antivirus defense systems and mobile genes and elements in genomic islands. The defense islands are enriched in putative operons and contain numerous overrepresented gene families. A detailed sequence analysis of the proteins encoded by genes in these families shows that many of them are diverged variants of known defense system components, whereas others show features, such as characteristic operonic organization, that are suggestive of novel defense systems. Thus, genomic islands provide abundant material for the experimental study of bacterial and archaeal antivirus defense. Except for the CRISPR-Cas systems, different classes of defense systems, in particular toxin-antitoxin and restriction-modification systems, show nonrandom clustering in defense islands. It remains unclear to what extent these associations reflect functional cooperation between different defense systems and to what extent the islands are genomic “sinks” that accumulate diverse nonessential genes, particularly those acquired via horizontal gene transfer. The characteristics of defense islands resemble those of mobilome islands. Defense and mobilome genes are nonrandomly associated in islands, suggesting nonadaptive evolution of the islands via a preferential attachment-like mechanism underpinned by the addictive properties of defense systems such as toxins-antitoxins and an important role of horizontal mobility in the evolution of these islands. PMID:21908672

Defense islands in bacterial and archaeal genomes and prediction of novel defense systems.

PubMed

Makarova, Kira S; Wolf, Yuri I; Snir, Sagi; Koonin, Eugene V

2011-11-01

The arms race between cellular life forms and viruses is a major driving force of evolution. A substantial fraction of bacterial and archaeal genomes is dedicated to antivirus defense. We analyzed the distribution of defense genes and typical mobilome components (such as viral and transposon genes) in bacterial and archaeal genomes and demonstrated statistically significant clustering of antivirus defense systems and mobile genes and elements in genomic islands. The defense islands are enriched in putative operons and contain numerous overrepresented gene families. A detailed sequence analysis of the proteins encoded by genes in these families shows that many of them are diverged variants of known defense system components, whereas others show features, such as characteristic operonic organization, that are suggestive of novel defense systems. Thus, genomic islands provide abundant material for the experimental study of bacterial and archaeal antivirus defense. Except for the CRISPR-Cas systems, different classes of defense systems, in particular toxin-antitoxin and restriction-modification systems, show nonrandom clustering in defense islands. It remains unclear to what extent these associations reflect functional cooperation between different defense systems and to what extent the islands are genomic "sinks" that accumulate diverse nonessential genes, particularly those acquired via horizontal gene transfer. The characteristics of defense islands resemble those of mobilome islands. Defense and mobilome genes are nonrandomly associated in islands, suggesting nonadaptive evolution of the islands via a preferential attachment-like mechanism underpinned by the addictive properties of defense systems such as toxins-antitoxins and an important role of horizontal mobility in the evolution of these islands.

Diffusion-controlled formation and collapse of a d-dimensional A-particle island in the B-particle sea.

PubMed

Shipilevsky, Boris M

2017-06-01

We consider diffusion-controlled evolution of a d-dimensional A-particle island in the B-particle sea at propagation of the sharp reaction front A+B→0 at equal species diffusivities. The A-particle island is formed by a localized (point) A-source with a strength λ that acts for a finite time T. We reveal the conditions under which the island collapse time t_{c} becomes much longer than the injection period T (long-living island) and demonstrate that regardless of d the evolution of the long-living island radius r_{f}(t) is described by the universal law ζ_{f}=r_{f}/r_{f}^{M}=sqrt[eτ|lnτ|], where τ=t/t_{c} and r_{f}^{M} is the maximal island expansion radius at the front turning point t_{M}=t_{c}/e. We find that in the long-living island regime the ratio t_{c}/T changes with the increase of the injection period T by the law ∝(λ^{2}T^{2-d})^{1/d}, i.e., increases with the increase of T in the one-dimensional (1D) case, does not change with the increase of T in the 2D case and decreases with the increase of T in the 3D case. We derive the scaling laws for particles death in the long-living island and determine the limits of their applicability. We demonstrate also that these laws describe asymptotically the evolution of the d-dimensional spherical island with a uniform initial particle distribution generalizing the results obtained earlier for the quasi-one-dimensional geometry. As striking results, we present a systematic analysis of the front relative width evolution for fluctuation, logarithmically modified, and mean-field regimes, and we demonstrate that in a wide range of parameters the front remains sharp up to a narrow vicinity of the collapse point.

Investigating Island Evolution: A Galapagos-Based Lesson Using the 5E Instructional Model.

ERIC Educational Resources Information Center

DeFina, Anthony V.

2002-01-01

Introduces an inquiry-based lesson plan on evolution and the Galapagos Islands. Uses the 5E instructional model which includes phases of engagement, exploration, explanation, elaboration, and evaluation. Includes information on species for exploration and elaboration purposes, and a general rubric for student evaluation. (YDS)

Validation of neoclassical bootstrap current models in the edge of an H-mode plasma.

PubMed

Wade, M R; Murakami, M; Politzer, P A

2004-06-11

Analysis of the parallel electric field E(parallel) evolution following an L-H transition in the DIII-D tokamak indicates the generation of a large negative pulse near the edge which propagates inward, indicative of the generation of a noninductive edge current. Modeling indicates that the observed E(parallel) evolution is consistent with a narrow current density peak generated in the plasma edge. Very good quantitative agreement is found between the measured E(parallel) evolution and that expected from neoclassical theory predictions of the bootstrap current.

Holocene Evolution and Sediment Provenance of Horn Island, Mississippi, USA

NASA Astrophysics Data System (ADS)

Schulze, N.; Wallace, D. J.; Miner, M. D.

2017-12-01

As one of the most stable islands in the Mississippi-Alabama barrier island chain, Horn Island provides critical habitat, plays an important role in regulating estuarine conditions in the Mississippi Sound, and helps to attenuate wave energy and storm surge for the mainland. The provenance of sediments comprising Horn Island is largely unknown and has implications for mode of island genesis and evolution. The existing literature proposes that island chain formation was initiated by bar emergence from a subaqueous spit that grew laterally westward from Dauphin Island in the east. Decelerating sea level rise 4,000 to 5,000 years ago facilitated island formation. This proposed mode of formation is supported by a lone radiocarbon date from lagoonal sediments below Horn Island, suggesting the system formed after 4,615 ± 215 years BP. Rivers supplying suspended sediment include the Mississippi, Pascagoula, Mobile and Apalachicola, but the variable nature of their paths and sediment supply means that Horn Island has received differing amounts of sediment from these proximal rivers throughout the Holocene. To analyze the stratigraphy and sediment characteristics of Horn Island, we will utilize 24 vibracores (up to 6 meters in length) from offshore Horn Island that were obtained by the United States Geological Survey (USGS) and 9 onshore drill cores (up to 28 meters in length) from the Mississippi Department of Environmental Quality. High-resolution LiDAR data collected by the National Oceanic and Atmospheric Administration in 2010 will be used to describe modern geomorphic barrier environments. We will employ down-core x-ray diffraction and x-ray fluorescence analyses to identify mineralogical and chemical signatures that potentially correspond to unique signatures of the fluvial sources of proximal rivers. New radiocarbon ages will be used to constrain the timing of island formation and alterations in sediment supply. High-resolution shallow geophysical data will provide regional information on paleo-fluvial courses and their influence on island formation, sediment supply, and evolution.

Formation of silicon nanodots via ion beam sputtering of ultrathin gold thin film coatings on Si

PubMed Central

2011-01-01

Ion beam sputtering of ultrathin film Au coatings used as a physical catalyst for self-organization of Si nanostructures has been achieved by tuning the incident particle energy. This approach holds promise as a scalable nanomanufacturing parallel processing alternative to candidate nanolithography techniques. Structures of 11- to 14-nm Si nanodots are formed with normal incidence low-energy Ar ions of 200 eV and fluences above 2 × 1017 cm-2. In situ surface characterization during ion irradiation elucidates early stage ion mixing migration mechanism for nanodot self-organization. In particular, the evolution from gold film islands to the formation of ion-induced metastable gold silicide followed by pure Si nanodots formed with no need for impurity seeding. PMID:21711934

Island biogeography of marine organisms

NASA Astrophysics Data System (ADS)

Pinheiro, Hudson T.; Bernardi, Giacomo; Simon, Thiony; Joyeux, Jean-Christophe; Macieira, Raphael M.; Gasparini, João Luiz; Rocha, Claudia; Rocha, Luiz A.

2017-09-01

Studies on the distribution and evolution of organisms on oceanic islands have advanced towards a dynamic perspective, where terrestrial endemicity results from island geographical aspects and geological history intertwined with sea-level fluctuations. Diversification on these islands may follow neutral models, decreasing over time as niches are filled, or disequilibrium states and progression rules, where richness and endemism rise with the age of the archipelago owing to the splitting of ancestral lineages (cladogenesis). However, marine organisms have received comparatively little scientific attention. Therefore, island and seamount evolutionary processes in the aquatic environment remain unclear. Here we analyse the evolutionary history of reef fishes that are endemic to a volcanic ridge of seamounts and islands to understand their relations to island evolution and sea-level fluctuations. We also test how this evolutionary history fits island biogeography theory. We found that most endemic species have evolved recently (Pleistocene epoch), during a period of recurrent sea-level changes and intermittent connectivity caused by repeated aerial exposure of seamounts, a finding that is consistent with an ephemeral ecological speciation process. Similar to findings for terrestrial biodiversity, our data suggest that the marine speciation rate on islands is negatively correlated with immigration rate. However, because marine species disperse better than terrestrial species, most niches are filled by immigration: speciation increases with the random accumulation of species with low dispersal ability, with few opportunities for in situ cladogenesis and adaptive radiation. Moreover, we confirm that sea-level fluctuations and seamount location play a critical role in marine evolution, mainly by intermittently providing stepping stones for island colonization.

Analysis of surface deformation during the eruptive process of El Hierro Island (Canary Islands, Spain): Detection, Evolution and Forecasting.

NASA Astrophysics Data System (ADS)

Berrocoso, M.; Fernandez-Ros, A.; Prates, G.; Martin, M.; Hurtado, R.; Pereda, J.; Garcia, M. J.; Garcia-Cañada, L.; Ortiz, R.; Garcia, A.

2012-04-01

The surface deformation has been an essential parameter for the onset and evolution of the eruptive process of the island of El Hierro (October 2011) as well as for forecasting changes in seismic and volcanic activity during the crisis period. From GNSS-GPS observations the reactivation is early detected by analizing the change in the deformation of the El Hierro Island regional geodynamics. It is found that the surface deformation changes are detected before the occurrence of seismic activity using the station FRON (GRAFCAN). The evolution of the process has been studied by the analysis of time series of topocentric coordinates and the variation of the distance between stations on the island of El Hierro (GRAFCAN station;IGN network; and UCA-CSIC points) and LPAL-IGS station on the island of La Palma. In this work the main methodologies and their results are shown: •The location (and its changes) of the litospheric pressure source obtained by applying the Mogi model. •Kalman filtering technique for high frequency time series, used to make the forecasts issued for volcanic emergency management. •Correlations between deformation of the different GPS stations and their relationship with seismovolcanic settings.

Comparative phylogeography of oceanic archipelagos: Hotspots for inferences of evolutionary process

PubMed Central

Shaw, Kerry L.; Gillespie, Rosemary G.

2016-01-01

Remote island archipelagos offer superb opportunities to study the evolution of community assembly because of their relatively young and simple communities where speciation contributes to the origin and evolution of community structure. There is great potential for common phylogeographic patterns among remote archipelagos that originate through hotspot volcanism, particularly when the islands formed are spatially isolated and linearly arranged. The progression rule is characterized by a phylogeographic concordance between island age and lineage age in a species radiation. Progression is most likely to arise when a species radiation begins on an older island before the emergence of younger islands of a hotspot archipelago. In the simplest form of progression, colonization of younger islands as they emerge and offer appropriate habitat, is coincident with cladogenesis. In this paper, we review recent discoveries of the progression rule on seven hotspot archipelagos. We then discuss advantages that progression offers to the study of community assembly, and insights that community dynamics may offer toward understanding the evolution of progression. We describe results from two compelling cases of progression where the mosaic genome may offer insights into contrasting demographic histories that shed light on mechanisms of speciation and progression on remote archipelagos. PMID:27432948

Geologic framework of the Aleutian arc, Alaska

USGS Publications Warehouse

Vallier, Tracy L.; Scholl, David W.; Fisher, Michael A.; Bruns, Terry R.; Wilson, Frederic H.; von Huene, Roland E.; Stevenson, Andrew J.

1994-01-01

The Aleutian arc is the arcuate arrangement of mountain ranges and flanking submerged margins that forms the northern rim of the Pacific Basin from the Kamchatka Peninsula (Russia) eastward more than 3,000 km to Cooke Inlet (Fig. 1). It consists of two very different segments that meet near Unimak Pass: the Aleutian Ridge segment to the west and the Alaska Peninsula-the Kodiak Island segment to the east. The Aleutian Ridge segment is a massive, mostly submerged cordillera that includes both the islands and the submerged pedestal from which they protrude. The Alaska Peninsula-Kodiak Island segment is composed of the Alaska Peninsula, its adjacent islands, and their continental and insular margins. The Bering Sea margin north of the Alaska Peninsula consists mostly of a wide continental shelf, some of which is underlain by rocks correlative with those on the Alaska Peninsula.There is no pre-Eocene record in rocks of the Aleutian Ridge segment, whereas rare fragments of Paleozoic rocks and extensive outcrops of Mesozoic rocks occur on the Alaska Peninsula. Since the late Eocene, and possibly since the early Eocene, the two segments have evolved somewhat similarly. Major plutonic and volcanic episodes, however, are not synchronous. Furthermore, uplift of the Alaska Peninsula-Kodiak Island segment in late Cenozoic time was more extensive than uplift of the Aleutian Ridge segment. It is probable that tectonic regimes along the Aleutian arc varied during the Tertiary in response to such factors as the directions and rates of convergence, to bathymetry and age of the subducting Pacific Plate, and to the volume of sediment in the Aleutian Trench.The Pacific and North American lithospheric plates converge along the inner wall of the Aleutian trench at about 85 to 90 mm/yr. Convergence is nearly at right angles along the Alaska Peninsula, but because of the arcuate shape of the Aleutian Ridge relative to the location of the plates' poles of rotation, the angle of convergence lessens to the west (Minster and Jordan, 1978). Along the central Aleutian Ridge, underthrusting is about 30° from normal to the volcanic axis. Motion between plates is approximately parallel along the western Aleutian Ridge.In this paper we briefly describe and interpret the Cenozoic evolution of the Aleutian arc by focusing on the onshore and offshore geologic frameworks in four of its sectors, two sectors each from the Aleutian Ridge and Alaska Peninsula-Kodiak Island segments (Fig. 1). We compare the geologic evolution of the segments and comment on the implications of some new, previously unpublished data.

Island biology: looking towards the future

PubMed Central

Kueffer, Christoph; Drake, Donald R.; Fernández-Palacios, José María

2014-01-01

Oceanic islands are renowned for the profound scientific insights that their fascinating biotas have provided to biologists during the past two centuries. Research presented at Island Biology 2014—an international conference, held in Honolulu, Hawaii (7–11 July 2014), which attracted 253 presenters and 430 participants from at least 35 countries1—demonstrated that islands are reclaiming a leading role in ecology and evolution, especially for synthetic studies at the intersections of macroecology, evolution, community ecology and applied ecology. New dynamics in island biology are stimulated by four major developments. We are experiencing the emergence of a truly global and comprehensive island research community incorporating previously neglected islands and taxa. Macroecology and big-data analyses yield a wealth of global-scale synthetic studies and detailed multi-island comparisons, while other modern research approaches such as genomics, phylogenetic and functional ecology, and palaeoecology, are also dispersing to islands. And, increasingly tight collaborations between basic research and conservation management make islands places where new conservation solutions for the twenty-first century are being tested. Islands are home to a disproportionate share of the world's rare (and extinct) species, and there is an urgent need to develop increasingly collaborative and innovative research to address their conservation requirements. PMID:25339655

Nested modeling approach to quantify sediment transport pathways and temporal variability of barrier island evolution

NASA Astrophysics Data System (ADS)

Long, J. W.; Dalyander, S.; Sherwood, C. R.; Thompson, D. M.; Plant, N. G.

2012-12-01

The Chandeleur Islands, situated off the coast of Louisiana in the Gulf of Mexico, comprise a sand-starved barrier island system that has been disintegrating over the last decade. The persistent sediment transport in this area is predominantly directed alongshore but overwash and inundation during storm conditions has fragmented the island and reduced the subaerial extent by almost 75% since 2001. From 2010-2011 a sand berm was constructed along the Gulf side of the island adding 20 million cubic yards of sediment to this barrier island system. The redistribution of this sediment, particularly whether it remains in the active system and progrades the barrier island, has been evaluated using a series of numerical models and an extensive set of in situ and remote sensing observations. We have developed a coupled numerical modeling system capable of simulating morphologic evolution of the sand berm and barrier island using observations and predictions of regional and nearshore oceanographic processes. A nested approach provides large scale oceanographic information to force island evolution in a series of smaller grids, including two nearshore domains that are designed to simulate (1) the persistent alongshore sediment transport O(months-years) and (2) the overwash and breaching of the island/berm due to cross-shore forcing driven by winter cold fronts and tropical storms (O(hours-days)). The coupled model is evaluated using the observations of waves, water levels, currents, and topographic/morphologic change. Modeled processes are then used to identify the dominant sediment transport pathways and quantify the role of alongshore and cross-shore sediment transport in evolving the barrier island over a range of temporal scales.

Sediment data collected in 2012 from the northern Chandeleur Islands, Louisiana

USGS Publications Warehouse

Bernier, Julie C.; Kelso, Kyle W.; Buster, Noreen A.; Flocks, James G.; Miselis, Jennifer L.; DeWitt, Nancy T.

2014-01-01

As part of the Barrier Island Evolution Research project, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center collected sediment samples from the northern Chandeleur Islands in March and September 2012. The overall objective of this project, which integrates geophysical (bathymetric, seismic, and topographic) and sedimentologic data, is to better understand the depositional and erosional processes that drive the morphologic evolution of barrier islands over annual to interannual timescales (1 to 5 years). Between June 2010 and April 2011, in response to the Deepwater Horizon oil spill, the State of Louisiana constructed a sand berm extending more than 14 kilometers along the northern Chandeleur Islands platform. The construction of the berm provided a unique opportunity to investigate how this new sediment source will interact with and affect the morphologic evolution of the barrier-island system. Data collected from this study will be used to describe differences in the physical characteristics and spatial distribution of sediments both along the axis of the berm and also along transects across the berm and onto the adjacent barrier island. Comparison of these data with data from subsequent sampling efforts will provide information about sediment interactions and movement between the berm and the natural island platform, improving our understanding of short-term morphologic change and processes in this barrier-island system. This data series serves as an archive of sediment data collected in March and September 2012 from the Chandeleur Islands sand berm and adjacent barrier-island environments. Data products include descriptive core logs, core photographs and x-radiographs, results of sediment grain-size analyses, sample location maps, and Geographic Information System data files with accompanying formal Federal Geographic Data Committee metadata.

Evolution of limited seed dispersal ability on gypsum islands.

PubMed

Schenk, John J

2013-09-01

Dispersal is a major feature of plant evolution that has many advantages but is not always favored. Wide dispersal, for example, leads to greater seed loss in oceanic-island endemics, and evolution has favored morphologies that limit dispersal. I tested the hypothesis that selection favored limited dispersal on gypsum islands in western North America, where edaphic communities are sparsely vegetated except for a specialized flora that competes poorly with the surrounding flora. • I applied a series of comparative phylogenetic approaches to gypsophilic species of Mentzelia section Bartonia (Loasaceae) to investigate the evolution of limited dispersal function in seed wings, which increase primary dispersal by wind. Through these tests, I determined whether narrowed wings were selected for in gypsophilic species. • Gypsophily was derived four to seven times. Seed area was not significantly correlated with gypsophily or wing area. Wing area was significantly smaller in the derived gypsum endemics, supporting the hypothesis in favor of limited dispersal function. A model-fitting approach identified two trait optima in wing area, with gypsum endemics having a lower optimum. • Evolution into novel ecologies influences morphological evolution. Morphological characters have been selected for limited dispersal following evolution onto gypsum islands. Selection for limited dispersal ability has occurred across animals and plants, both in oceanic and terrestrial systems, which suggests that reduced dispersal ability may be a general process: selection favors limited dispersal if the difference in survival between the habitat of the parent and the surrounding area is great enough.

Mitochondrial genomes suggest rapid evolution of dwarf California Channel Islands foxes (Urocyon littoralis).

PubMed

Hofman, Courtney A; Rick, Torben C; Hawkins, Melissa T R; Funk, W Chris; Ralls, Katherine; Boser, Christina L; Collins, Paul W; Coonan, Tim; King, Julie L; Morrison, Scott A; Newsome, Seth D; Sillett, T Scott; Fleischer, Robert C; Maldonado, Jesus E

2015-01-01

Island endemics are typically differentiated from their mainland progenitors in behavior, morphology, and genetics, often resulting from long-term evolutionary change. To examine mechanisms for the origins of island endemism, we present a phylogeographic analysis of whole mitochondrial genomes from the endangered island fox (Urocyon littoralis), endemic to California's Channel Islands, and mainland gray foxes (U. cinereoargenteus). Previous genetic studies suggested that foxes first appeared on the islands >16,000 years ago, before human arrival (~13,000 cal BP), while archaeological and paleontological data supported a colonization >7000 cal BP. Our results are consistent with initial fox colonization of the northern islands probably by rafting or human introduction ~9200-7100 years ago, followed quickly by human translocation of foxes from the northern to southern Channel Islands. Mitogenomes indicate that island foxes are monophyletic and most closely related to gray foxes from northern California that likely experienced a Holocene climate-induced range shift. Our data document rapid morphological evolution of island foxes (in ~2000 years or less). Despite evidence for bottlenecks, island foxes have generated and maintained multiple mitochondrial haplotypes. This study highlights the intertwined evolutionary history of island foxes and humans, and illustrates a new approach for investigating the evolutionary histories of other island endemics.

Mitochondrial Genomes Suggest Rapid Evolution of Dwarf California Channel Islands Foxes (Urocyon littoralis)

PubMed Central

Hofman, Courtney A.; Rick, Torben C.; Hawkins, Melissa T. R.; Funk, W. Chris; Ralls, Katherine; Boser, Christina L.; Collins, Paul W.; Coonan, Tim; King, Julie L.; Morrison, Scott A.; Newsome, Seth D.; Sillett, T. Scott; Fleischer, Robert C.; Maldonado, Jesus E.

2015-01-01

Island endemics are typically differentiated from their mainland progenitors in behavior, morphology, and genetics, often resulting from long-term evolutionary change. To examine mechanisms for the origins of island endemism, we present a phylogeographic analysis of whole mitochondrial genomes from the endangered island fox (Urocyon littoralis), endemic to California’s Channel Islands, and mainland gray foxes (U. cinereoargenteus). Previous genetic studies suggested that foxes first appeared on the islands >16,000 years ago, before human arrival (~13,000 cal BP), while archaeological and paleontological data supported a colonization >7000 cal BP. Our results are consistent with initial fox colonization of the northern islands probably by rafting or human introduction ~9200–7100 years ago, followed quickly by human translocation of foxes from the northern to southern Channel Islands. Mitogenomes indicate that island foxes are monophyletic and most closely related to gray foxes from northern California that likely experienced a Holocene climate-induced range shift. Our data document rapid morphological evolution of island foxes (in ~2000 years or less). Despite evidence for bottlenecks, island foxes have generated and maintained multiple mitochondrial haplotypes. This study highlights the intertwined evolutionary history of island foxes and humans, and illustrates a new approach for investigating the evolutionary histories of other island endemics. PMID:25714775

Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands.

PubMed

Rocha, Sara; Posada, David; Harris, D James

2013-01-05

Lying in a shallow continental shelf cyclically affected by oscillating sea levels since the Miocene, the Seychelles islands are particularly interesting for evolutionary studies. Recent molecular studies are generating an emerging picture of the origin of its biota, yet very little is known regarding their phylogeographic structure or on the factors promoting diversification within the archipelago. Here we aimed to obtain a detailed depiction of the genetic structure and evolution of one of the most widespread vertebrate groups in the archipelago: the day-geckos of the genus Phelsuma. In parallel, we aimed to infer divergence times between species and subspecies, testing a long-standing hypothesis that argues for different time since sympatry between species as the cause of their different morphological differentiation across the archipelago. Molecular data corroborated the existence of two main lineages, corresponding to the two currently recognized species. Divergences between species likely date back to the Mio-Pliocene, while more recent, Pleistocenic, divergences are suggested within each species. Populations from outer islands share mtDNA haplotypes with inner island populations, suggesting very recent dispersals (or introductions). We found no evidence of current gene flow between species, but results pointed to the possibility of gene flow between (now allopatric) subspecies. Time estimates suggest a synchronous divergence within each species (between island groups). The geographic patterns of genetic variation agree with previous taxonomic subdivisions within each species and the origin of outer islands populations is clearly tracked. The similar intraspecific divergence time estimates obtained suggest that the differential body-size differentiation between species within each group of islands may be driven by factors other than character displacement proportional to time since sympatry, as previously suggested. These factors could include different habitats/resources available within each island group, niche differentiation and/or character displacement. We also bring again into consideration the hypothesis of body size being influenced by the distribution of native vegetation and social systems within this group, although it remains to be tested. Our results highlight not only the necessity of clarifying the role of ecology and interspecific interactions in this group's morphological diversification and community assemblage, but also the importance of co-evolutionary mechanisms and their importance for appropriate conservation of island biodiversity. Further, we provide a detailed description of the phylogeographic structure of these taxa across these islands, which still remain poorly characterized in this respect.

Transgressive Shoreface Response in the Mississippi River DeltaShoreface Sediment Budget Influence on Barrier Island Evolution, Louisiana, USA

NASA Astrophysics Data System (ADS)

Beasley, B.; Georgiou, I. Y.; Miner, M. D.

2017-12-01

In Louisiana barrier islands are undergoing rapid morphological change due to shoreface retreat and increasing bay tidal prism driven by high rates of relative sea-level rise (RSLR) (1 cm/yr) and interior wetland loss, respectively. Previous works utilized historical region-scale bathymetry change and shoreline change analyses to assess large-scale coastal evolution. However, more localized assessments considering the role of sediment transport processes in regional evolution are lacking. This is essential to predicting coastal change trajectories and allocating limited sand resources for nourishment. Using historic bathymetric and shoreline data dating to the 1890s for the Louisiana coast, 100-m spaced shore-normal transects were created to track meter-scale elevation change for 1890, 1930, 1980, 2006, and 2015. An automated framework was used to quantify and track barrier island evolution parameters such as shoreline change, area, width, bathymetric contour migration, and shoreface slope. During the 125 yr analysis period, shoreline erosion mean rates slowed from 12 to 6 m/yr while lower shoreface migration mean rates increased from 5 to 25 m/yr. Locally, retreat rates for the Caminada Headland upper shoreface slowed from 18 to 8 m/yr while lower shoreface retreat rates increased from 8 to 14m/yr. The Timbalier Islands experienced increased migration rates along the entire shoreface, while the lower shoreface of the Isles Dernieres transitioned from progradational to erosional (-5 m/yr in 1890 to 20 m/yr in 2006). Our analysis suggests that although shoreline erosion rates decreased, overall landward migration of the barrier system increased as the shoreface steepened. Our results illustrate that monitoring subaerial island erosion rates are insufficient for evaluating regional dynamics of transgressive coastal systems. The longevity of barriers appears diminished due to a reduction in the shoreface sediment available and further corroborates the role of the shoreface on barrier island evolution. Advances in understanding these processes will facilitate more informed planning, management, and mitigation of transgressive barrier islands.

Independent and parallel evolution of new genes by gene duplication in two origins of C4 photosynthesis provides new insight into the mechanism of phloem loading in C4 species

DOE PAGES

Emms, David M.; Covshoff, Sarah; Hibberd, Julian M.; ...

2016-03-24

C4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes ismore » enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Moreover, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species.« less

Real time analysis of self-assembled InAs/GaAs quantum dot growth by probing reflection high-energy electron diffraction chevron image

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kudo, Takuya; Inoue, Tomoya; Kita, Takashi

2008-10-01

Self-assembling process of InAs/GaAs quantum dots has been investigated by analyzing reflection high-energy electron diffraction chevron images reflecting the crystal facet structure surrounding the island. The chevron image shows dramatic changes during the island formation. From the temporal evolution of the chevron tail structure, the self-assembling process has been found to consist of four steps. The initial islands do not show distinct facet structures. Then, the island surface is covered by high-index facets, and this is followed by the formation of stable low-index facets. Finally, the flow of In atoms from the islands occurs, which contributes to flatten the wettingmore » layer. Furthermore, we have investigated the island shape evolution during the GaAs capping layer growth by using the same real-time analysis technique.« less

Comparative Evolution of an Archetypal Adaptive Radiation: Innovation and Opportunity in Anolis Lizards.

PubMed

Poe, Steven; de Oca, Adrián Nieto-Montes; Torres-Carvajal, Omar; de Queiroz, Kevin; Velasco, Julián A; Truett, Brad; Gray, Levi N; Ryan, Mason J; Köhler, Gunther; Ayala-Varela, Fernando; Latella, Ian

2018-06-01

Adaptive radiation is a widely recognized pattern of evolution wherein substantial phenotypic change accompanies rapid speciation. Adaptive radiation may be triggered by environmental opportunities resulting from dispersal to new areas or via the evolution of traits, called key innovations, that allow for invasion of new niches. Species sampling is a known source of bias in many comparative analyses, yet classic adaptive radiations have not been studied comparatively with comprehensively sampled phylogenies. In this study, we use unprecedented comprehensive phylogenetic sampling of Anolis lizard species to examine comparative evolution in this well-studied adaptive radiation. We compare adaptive radiation models within Anolis and in the Anolis clade and a potential sister lineage, the Corytophanidae. We find evidence for island (i.e., opportunity) effects and no evidence for trait (i.e., key innovation) effects causing accelerated body size evolution within Anolis. However, island effects are scale dependent: when Anolis and Corytophanidae are analyzed together, no island effect is evident. We find no evidence for an island effect on speciation rate and tenuous evidence for greater speciation rate due to trait effects. These results suggest the need for precision in treatments of classic adaptive radiations such as Anolis and further refinement of the concept of adaptive radiation.

Composition of island arcs and continental growth.

NASA Technical Reports Server (NTRS)

Jakes, P.; White, A. J. R.

1971-01-01

Island arc volcanism has contributed and is still contributing to continental growth, but the composition of island arcs differs from that of the upper continental crust in its lower abundance of Si, K, Rb, Ba, Sr and light rare earth elements. In their advanced stage of evolution, island arcs contain more than 80% of tholeiitic and 15% of ?island arc' calc-alkaline rocks with varied SiO2 contents. The larger proportion of tholeiitic rocks is in the lower crustal levels. The high stratigraphical levels of the island arcs are composed of tholeiitic plus calc-alkaline and/or high potash (shoshonitic) associations with higher abundances of K, Rb, Sr, and Ba. Stratification of the island arc crust is accentuated by another type of calc-alkaline volcanism (Andean type) originating at a late stage of arc evolution, probably by partial melting at the base of the crust. This causes enrichment of the upper crust in K, Rb, Ba and REE and accounts for upper crustal abundances of these elements as well as of SiO2.

Phylogeographic and population genetic analyses reveal multiple species of Boa and independent origins of insular dwarfism.

PubMed

Card, Daren C; Schield, Drew R; Adams, Richard H; Corbin, Andrew B; Perry, Blair W; Andrew, Audra L; Pasquesi, Giulia I M; Smith, Eric N; Jezkova, Tereza; Boback, Scott M; Booth, Warren; Castoe, Todd A

2016-09-01

Boa is a Neotropical genus of snakes historically recognized as monotypic despite its expansive distribution. The distinct morphological traits and color patterns exhibited by these snakes, together with the wide diversity of ecosystems they inhabit, collectively suggest that the genus may represent multiple species. Morphological variation within Boa also includes instances of dwarfism observed in multiple offshore island populations. Despite this substantial diversity, the systematics of the genus Boa has received little attention until very recently. In this study we examined the genetic structure and phylogenetic relationships of Boa populations using mitochondrial sequences and genome-wide SNP data obtained from RADseq. We analyzed these data at multiple geographic scales using a combination of phylogenetic inference (including coalescent-based species delimitation) and population genetic analyses. We identified extensive population structure across the range of the genus Boa and multiple lines of evidence for three widely-distributed clades roughly corresponding with the three primary land masses of the Western Hemisphere. We also find both mitochondrial and nuclear support for independent origins and parallel evolution of dwarfism on offshore island clusters in Belize and Cayos Cochinos Menor, Honduras. Copyright © 2016 Elsevier Inc. All rights reserved.

Recent and historic drivers of landscape change in the Everglades ridge, slough, and Tree Island mosaic

USGS Publications Warehouse

Larsen, Laurel G.; Nicholas Aumen,; Bernhardt, Christopher E.; Vic Engel,; Givnish, Thomas J.; S Hagerthey, P McCormick; Harvey, Judson; Lynn Leonard,; McCormick, P.; McVoy, Christopher; Noe, Gregory; Nungesser, Martha K.; Rutchey, K.; Sklar, Fred; Troxler, Tiffany G.; Volin, John C.; Willard, Debra A.

2011-01-01

More than half of the original Everglades extent formed a patterned peat mosaic of elevated ridges, lower and more open sloughs, and tree islands aligned parallel to the dominant flow direction. This ecologically important landscape structure remained in a dynamic equilibrium for millennia prior to rapid degradation over the past century in response to human manipulation of the hydrologic system. Restoration of the patterned landscape structure is one of the primary objectives of the Everglades restoration effort. Recent research has revealed that three main drivers regulated feedbacks that initiated and maintained landscape structure: the spatial and temporal distribution of surface water depths, surface and subsurface flow, and phosphorus supply. Causes of recent degradation include but are not limited to perturbations to these historically important controls; shifts in mineral and sulfate supply may have also contributed to degradation. Restoring predrainage hydrologic conditions will likely preserve remaining landscape pattern structure, provided a sufficient supply of surface water with low nutrient and low total dissolved solids content exists to maintain a rainfall-driven water chemistry. However, because of hysteresis in landscape evolution trajectories, restoration of areas with a fully degraded landscape could require additional human intervention.

IslandFAST: A Semi-numerical Tool for Simulating the Late Epoch of Reionization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Yidong; Chen, Xuelei; Yue, Bin

2017-08-01

We present the algorithm and main results of our semi-numerical simulation, islandFAST, which was developed from 21cmFAST and designed for the late stage of reionization. The islandFAST simulation predicts the evolution and size distribution of the large-scale underdense neutral regions (neutral islands), and we find that the late Epoch of Reionization proceeds very fast, showing a characteristic scale of the neutral islands at each redshift. Using islandFAST, we compare the impact of two types of absorption systems, i.e., the large-scale underdense neutral islands versus small-scale overdense absorbers, in regulating the reionization process. The neutral islands dominate the morphology of themore » ionization field, while the small-scale absorbers dominate the mean-free path of ionizing photons, and also delay and prolong the reionization process. With our semi-numerical simulation, the evolution of the ionizing background can be derived self-consistently given a model for the small absorbers. The hydrogen ionization rate of the ionizing background is reduced by an order of magnitude in the presence of dense absorbers.« less

Tectonics and Current Plate Motions of Northern Vancouver Island and the Adjacent Mainland

NASA Astrophysics Data System (ADS)

Jiang, Y.; Leonard, L. J.; Henton, J.; Hyndman, R. D.

2016-12-01

Northern Vancouver Island comprises a complex transition zone along the western margin of the North America plate, between the subducting Juan de Fuca plate to the south and the transcurrent Queen Charlotte Fault to the north off Haida Gwaii. The tectonic history and seismic potential for this region are unclear. Here we present current plate motions for northern Vancouver Island and the adjacent mainland, determined from continuous and campaign GPS measurements processed in a consistent manner. Immediately to the north of the mid-Vancouver Island Nootka Fault Zone, the northern limit of Juan de Fuca plate subduction, GPS velocity vectors show slower Explorer plate subduction than the Juan de Fuca Plate. Off northernmost Vancouver Island, the Winona Block is possibly converging at a slow rate that decreases northward to zero. We find a constant northward margin-parallel translation of up to 5 mm/year from northern Vancouver Island extending to Alaska. The southern limit of this translation coincides with areas of high heat flow that may reflect extension and the northern limit of episodic tremor and slip (ETS) on the Cascadia megathrust. The origin of the northward translation is poorly understood. We find a mainland coastal shear zone extends as far south as northern Vancouver Island where the offshore plate boundary is likely subduction. The pattern of the observed coastal shear cannot reflect interseismic locking on a major offshore transcurrent fault. The geodetically determined mainland coastal zone velocities decrease landward from 5 to 0 mm/yr across a region where no active faults have been identified and there is very little current seismicity. In Haida Gwaii, oblique convergence is apparent in the GPS data, consistent with partitioning between margin-parallel and margin-perpendicular strain. After removing the margin parallel translation from the data, we determine an average maximum locking depth of 15 km for the Queen Charlotte transcurrent fault, consistent with seismicity and seismic structure data.

Multiscale Simulations of Magnetic Island Coalescence

NASA Technical Reports Server (NTRS)

Dorelli, John C.

2010-01-01

We describe a new interactive parallel Adaptive Mesh Refinement (AMR) framework written in the Python programming language. This new framework, PyAMR, hides the details of parallel AMR data structures and algorithms (e.g., domain decomposition, grid partition, and inter-process communication), allowing the user to focus on the development of algorithms for advancing the solution of a systems of partial differential equations on a single uniform mesh. We demonstrate the use of PyAMR by simulating the pairwise coalescence of magnetic islands using the resistive Hall MHD equations. Techniques for coupling different physics models on different levels of the AMR grid hierarchy are discussed.

Small scale inhomogeneity in the mantle source of the Cape Verde hotspot is probably related to plume complexity: implications from Sr, Nd and high precision Pb isotopes and geochemistry

NASA Astrophysics Data System (ADS)

Holm, P. M.; Sørensen, R. V.

2009-04-01

The volcanic rocks of one of the major islands of the Cape Verde hotspot have been investigated in order to test mantle plume models. From the centre of the Cape Verde Rise an array of islands trend west, the northern HIMU-type Cape Verde Islands. Of these, São Nicolau (SN) is the easternmost and Santo Antão the westernmost. Sixty samples of primitive (MgO = 9-14 wt%) basanitic composition from SN that represent the four volcanic stages of the 9 - 0.1 Ma evolution of the island have been analysed for Sr, Nd and high precision Pb isotopic composition. Pb ranges to a less radiogenic composition than on SA [1] and has lower 8/4 than the rocks of the southern EM1-type Cape Verde islands. Most SN lavas have a young HIMU character with negative 7/4. The most radiogenic Pb at SN is less thorogenic than Pb at SA. Temporal variation is also evident: An intermediate age group of samples have particularly low La/Nb = 0.4 - 0.5 and the least LREE-enrichment for SN. The youngest group of rocks has the lowest Zr/Nb = 2.5 - 3.0 and the most unradiogenic Sr and radiogenic Nd in the archipelago. At least four of the mantle source components for the SN magmas are different from any found in the SA magmas. High precision Pb data allow identification of parallel trends for northern SN and the southern island Santiago, which therefore must have unrelated source components. For the northern Cape Verde islands source compositions vary from E to W as well as with time. This cannot be explained by stationary enriched lithosphere components. The derivation of melts from a complex plume source is modelled. [1] Holm P.M., Wilson J.R., Christensen B.P., Hansen S.L., Hein K.M., Mortensen A.K., Pedersen R., Plesner S., and Runge M.K. (2006) JPetrol 47, 145-189.

Electron acceleration via magnetic island coalescence

NASA Astrophysics Data System (ADS)

Shinohara, I.; Yumura, T.; Tanaka, K. G.; Fujimoto, M.

2009-06-01

Electron acceleration via fast magnetic island coalescence that happens as quick magnetic reconnection triggering (QMRT) proceeds has been studied. We have carried out a three-dimensional full kinetic simulation of the Harris current sheet with a large enough simulation run for two magnetic islands coalescence. Due to the strong inductive electric field associated with the non-linear evolution of the lower-hybrid-drift instability and the magnetic island coalescence process observed in the non-linear stage of the collisionless tearing mode, electrons are significantly accelerated at around the neutral sheet and the subsequent X-line. The accelerated meandering electrons generated by the non-linear evolution of the lower-hybrid-drift instability are resulted in QMRT, and QMRT leads to fast magnetic island coalescence. As a whole, the reconnection triggering and its transition to large-scale structure work as an effective electron accelerator.

Scalar collapse in AdS with an OpenCL open source code

NASA Astrophysics Data System (ADS)

Liebling, Steven L.; Khanna, Gaurav

2017-10-01

We study the spherically symmetric collapse of a scalar field in anti-de Sitter spacetime using a newly constructed, open-source code which parallelizes over heterogeneous architectures using the open standard OpenCL. An open question for this scenario concerns how to tell, a priori, whether some form of initial data will be stable or will instead develop under the turbulent instability into a black hole in the limit of vanishing amplitude. Previous work suggested the existence of islands of stability around quasi-periodic solutions, and we use this new code to examine the stability properties of approximately quasi-periodic solutions which balance energy transfer to higher modes with energy transfer to lower modes. The evolutions provide some evidence, though not conclusively, for stability of initial data sufficiently close to quasiperiodic solutions.

Active faulting on the island of Crete (Greece)

NASA Astrophysics Data System (ADS)

Caputo, Riccardo; Catalano, Stefano; Monaco, Carmelo; Romagnoli, Gino; Tortorici, Giuseppe; Tortorici, Luigi

2010-10-01

ABSTRACT In order to characterize and quantify the Middle-Late Quaternary and ongoing deformation within the Southern Aegean forearc, we analyse the major tectonic structures affecting the island of Crete and its offshore. The normal faults typically consist of 4-30-km-long dip-slip segments locally organised in more complex fault zones. They separate carbonate and/or metamorphic massifs, in the footwall block, from loose to poorly consolidated alluvial and colluvial materials within the hangingwall. All these faults show clear evidences of recent re-activations and trend parallel to two principal directions: WNW-ESE and NNE-SSW. Based on all available data for both onland and offshore structures (morphological and structural mapping, satellite imagery and airphotographs remote sensing as well as the analysis of seismic profiles and the investigation of marine terraces and Holocene raised notches along the island coasts), for each fault we estimate and constrain some of the principal seismotectonic parameters and particularly the fault kinematics, the cumulative amount of slip and the slip-rate. Following simple assumptions and empirical relationships, maximum expected magnitudes and mean recurrence periods are also suggested. Summing up the contribution to crustal extension provided by the two major fault sets we calculate both arc-normal and arc-parallel long-term strain rates. The occurrence of slightly deeper and more external low-angle thrust planes associated with the incipient continental collision occurring in western Crete is also analysed. Although these contractional structures can generate stronger seismic events (M ~ 7.5.) they are probably much rarer and thus providing a minor contribution to the overall morphotectonic evolution of the island and the forearc. A comparison of our geologically-based results with those obtained from GPS measurements show a good agreement, therefore suggesting that the present-day crustal deformation is probably active since Middle Quaternary and mainly related to the seismic activity of upper crustal normal faults characterized by frequent shallow (<20 km) moderate-to-strong seismic events seldom alternating with stronger earthquakes occurring along blind low-angle thrust planes probably ramping from a deeper aseismic detachment (ca. 25 km). This apparently contradicting co-existence of juxtaposed upper tensional and lower compressional tectonic regimes is in agreement with the geodynamics of the region characterised by continental collision with Nubia and the Aegean mantle wedging.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Emms, David M.; Covshoff, Sarah; Hibberd, Julian M.

C4 photosynthesis is considered one of the most remarkable examples of evolutionary convergence in eukaryotes. However, it is unknown whether the evolution of C4 photosynthesis required the evolution of new genes. Genome-wide gene-tree species-tree reconciliation of seven monocot species that span two origins of C4 photosynthesis revealed that there was significant parallelism in the duplication and retention of genes coincident with the evolution of C4 photosynthesis in these lineages. Specifically, 21 orthologous genes were duplicated and retained independently in parallel at both C4 origins. Analysis of this gene cohort revealed that the set of parallel duplicated and retained genes ismore » enriched for genes that are preferentially expressed in bundle sheath cells, the cell type in which photosynthesis was activated during C4 evolution. Moreover, functional analysis of the cohort of parallel duplicated genes identified SWEET-13 as a potential key transporter in the evolution of C4 photosynthesis in grasses, and provides new insight into the mechanism of phloem loading in these C4 species.« less

Making the most of your host: the Metrosideros-feeding psyllids (Hemiptera, Psylloidea) of the Hawaiian Islands

PubMed Central

Percy, Diana M.

2017-01-01

Abstract The Hawaiian psyllids (Psylloidea, Triozidae) feeding on Metrosideros (Myrtaceae) constitute a remarkable radiation of more than 35 species. This monophyletic group has diversified on a single, highly polymorphic host plant species, Metrosideros polymorpha. Eleven Metrosideros-feeding species included in the Insects of Hawaii by Zimmerman are redescribed, and an additional 25 new species are described. Contrary to previous classifications that placed the Metrosideros-feeders in two genera, Trioza Foerster, 1848 and Kuwayama Crawford, 1911, all 36 named species are placed in Pariaconus Enderlein, 1926; and the relationship of this genus to other Pacific taxa within the family Triozidae, and other Austro-Pacific taxa feeding on host plants in Myrtaceae is clarified. The processes of diversification in Pariaconus include shifts in galling habit, geographic isolation within and between islands, and preferences for different morphotypes of the host plant. Four species groups are recognized: the bicoloratus and minutus groups are free-living or form pit galls, and together with the kamua group (composing all of the Kauai species) form a basal assemblage; the more derived closed gall species in the ohialoha group are found on all major islands except Kauai. The diversification of Pariaconus has likely occurred over several million years. Within island diversification is exemplified in the kamua group, and within species variation in the ohialoha group, but species discovery rates suggest this radiation remains undersampled. Mitochondrial DNA barcodes are provided for 28 of the 36 species. Genetic divergence, intraspecific genetic structure, and parallel evolution of different galling biologies and morphological traits are discussed within a phylogenetic framework. Outgroup analysis for the genus Pariaconus and ancestral character state reconstruction suggest pit-galling may be the ancestral state, and the closest outgroups are Palaearctic-Australasian taxa rather than other Pacific Metrosideros-feeders. PMID:28325970

Aspects of the evolution of the West Antarctic margin of Gondwanaland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grunow, A.M.

1989-01-01

A combination of paleomagnetism, structural field mapping, microprobe analysis, microfabric analysis and {sup 40}Ar/{sup 39}Ar geochronology was used to elucidate the history of the West Antarctic crustal block and the evolution of subduction complexes along the Scotia Ridge. West Antarctica is composed of four crustal blocks whose relationship to East Antarctica and to each other throughout the Phanerozoic is not well known. These blocks are: the Ellsworth-Whitmore Mountains (EWM); the Antarctic Peninsula (AP); Thurston Island (TI); Marie Byrd Land (MBL). Paleomagnetic sampling and analysis were conducted on rocks from the EWM and TI blocks in the hope of constraining themore » motion of these blocks and the opening history of the Weddell Sea. The paleomagnetic results suggest that the AP, EWM, and TI blocks have moved relative to East Antarctica prior to the mid-Cretaceous and that the main opening of the Weddell Sea was between the Early and mid-Cretaceous. Detailed field mapping was conducted on the subduction complexes of the Scotia Metamorphic Complex (SMC) on Smith Island and Elephant Island (Antarctica). Polyphase ductile deformation characterizes the Smith Island and Elephant Island tectonites. Microprobe analyses indicate that the blue amphiboles from both areas are primary crossite. Pressure-temperature estimates for Smith Island blueschist metamorphism are {approximately}350 C at 6-7 kbars. The {sup 40}Ar/{sup 39}Ar geochronology indicates a complex thermal evolution for the SMC. The north to south increase in intensity of deformation and metamorphism on Elephant Island corresponds to decrease in {sup 40}Ar/{sup 39}Ar age. Uplift of the Smith Island blueschists occurred since 47 Ma while most of the uplift on Elephant Island occurred since {approximately}102 Ma.« less

TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing.

PubMed

Farris, M Heath; Scott, Andrew R; Texter, Pamela A; Bartlett, Marta; Coleman, Patricia; Masters, David

2018-04-11

Single nucleotide polymorphisms (SNPs) located within the human genome have been shown to have utility as markers of identity in the differentiation of DNA from individual contributors. Massively parallel DNA sequencing (MPS) technologies and human genome SNP databases allow for the design of suites of identity-linked target regions, amenable to sequencing in a multiplexed and massively parallel manner. Therefore, tools are needed for leveraging the genotypic information found within SNP databases for the discovery of genomic targets that can be evaluated on MPS platforms. The SNP island target identification algorithm (TIA) was developed as a user-tunable system to leverage SNP information within databases. Using data within the 1000 Genomes Project SNP database, human genome regions were identified that contain globally ubiquitous identity-linked SNPs and that were responsive to targeted resequencing on MPS platforms. Algorithmic filters were used to exclude target regions that did not conform to user-tunable SNP island target characteristics. To validate the accuracy of TIA for discovering these identity-linked SNP islands within the human genome, SNP island target regions were amplified from 70 contributor genomic DNA samples using the polymerase chain reaction. Multiplexed amplicons were sequenced using the Illumina MiSeq platform, and the resulting sequences were analyzed for SNP variations. 166 putative identity-linked SNPs were targeted in the identified genomic regions. Of the 309 SNPs that provided discerning power across individual SNP profiles, 74 previously undefined SNPs were identified during evaluation of targets from individual genomes. Overall, DNA samples of 70 individuals were uniquely identified using a subset of the suite of identity-linked SNP islands. TIA offers a tunable genome search tool for the discovery of targeted genomic regions that are scalable in the population frequency and numbers of SNPs contained within the SNP island regions. It also allows the definition of sequence length and sequence variability of the target region as well as the less variable flanking regions for tailoring to MPS platforms. As shown in this study, TIA can be used to discover identity-linked SNP islands within the human genome, useful for differentiating individuals by targeted resequencing on MPS technologies.

Complex Pattern Formation from Current-Driven Dynamics of Single-Layer Epitaxial Islands on Crystalline Conducting Substrates

NASA Astrophysics Data System (ADS)

Kumar, Ashish; Dasgupta, Dwaipayan; Maroudas, Dimitrios

We report a systematic study of complex pattern formation resulting from the driven dynamics of single-layer homoepitaxial islands on face-centered cubic (FCC) crystalline conducting substrate surfaces under the action of an externally applied electric field. The analysis is based on an experimentally validated nonlinear model of mass transport via island edge atomic diffusion, which also accounts for edge diffusional anisotropy. We analyze the morphological stability and simulate the field-driven evolution of rounded islands for an electric field oriented along the fast diffusion direction. For larger than critical island sizes on {110} and {100} FCC substrates, we show that multiple necking instabilities generate complex island patterns, including void-containing islands, mediated by sequences of breakup and coalescence events and distributed symmetrically with respect to the electric field direction. We analyze the dependence of the formed patterns on the original island size and on the duration of application of the external field. Starting from a single large rounded island, we characterize the evolution of the number of daughter islands and their average size and uniformity. The analysis reveals that the pattern formation kinetics follows a universal scaling relation. Division of Materials Sciences & Engineering, Office of Basic Energy Sciences, U.S. Department of Energy (Award No.: DE-FG02-07ER46407).

Self-consistent modeling of the dynamic evolution of magnetic island growth in the presence of stabilizing electron-cyclotron current drive

NASA Astrophysics Data System (ADS)

Chatziantonaki, Ioanna; Tsironis, Christos; Isliker, Heinz; Vlahos, Loukas

2013-11-01

The most promising technique for the control of neoclassical tearing modes in tokamak experiments is the compensation of the missing bootstrap current with an electron-cyclotron current drive (ECCD). In this frame, the dynamics of magnetic islands has been studied extensively in terms of the modified Rutherford equation (MRE), including the presence of a current drive, either analytically described or computed by numerical methods. In this article, a self-consistent model for the dynamic evolution of the magnetic island and the driven current is derived, which takes into account the island's magnetic topology and its effect on the current drive. The model combines the MRE with a ray-tracing approach to electron-cyclotron wave-propagation and absorption. Numerical results exhibit a decrease in the time required for complete stabilization with respect to the conventional computation (not taking into account the island geometry), which increases by increasing the initial island size and radial misalignment of the deposition.

Ecological release and venom evolution of a predatory marine snail at Easter Island.

PubMed

Duda, Thomas F; Lee, Taehwan

2009-05-20

Ecological release is coupled with adaptive radiation and ecological diversification yet little is known about the molecular basis of phenotypic changes associated with this phenomenon. The venomous, predatory marine gastropod Conus miliaris has undergone ecological release and exhibits increased dietary breadth at Easter Island. We examined the extent of genetic differentiation of two genes expressed in the venom of C. miliaris among samples from Easter Island, American Samoa and Guam. The population from Easter Island exhibits unique frequencies of alleles that encode distinct peptides at both loci. Levels of divergence at these loci exceed observed levels of divergence observed at a mitochondrial gene region at Easter Island. Patterns of genetic variation at two genes expressed in the venom of this C. miliaris suggest that selection has operated at these genes and contributed to the divergence of venom composition at Easter Island. These results show that ecological release is associated with strong selection pressures that promote the evolution of new phenotypes.

First-order finite-Larmor-radius fluid modeling of tearing and relaxation in a plasma pincha)

NASA Astrophysics Data System (ADS)

King, J. R.; Sovinec, C. R.; Mirnov, V. V.

2012-05-01

Drift and Hall effects on magnetic tearing, island evolution, and relaxation in pinch configurations are investigated using a non-reduced first-order finite-Larmor-radius (FLR) fluid model with the nonideal magnetohydrodynamics (MHD) with rotation, open discussion (NIMROD) code [C.R. Sovinec and J. R. King, J. Comput. Phys. 229, 5803 (2010)]. An unexpected result with a uniform pressure profile is a drift effect that reduces the growth rate when the ion sound gyroradius (ρs) is smaller than the tearing-layer width. This drift is present only with warm-ion FLR modeling, and analytics show that it arises from ∇B and poloidal curvature represented in the Braginskii gyroviscous stress. Nonlinear single-helicity computations with experimentally relevant ρs values show that the warm-ion gyroviscous effects reduce saturated-island widths. Computations with multiple nonlinearly interacting tearing fluctuations find that m = 1 core-resonant-fluctuation amplitudes are reduced by a factor of two relative to single-fluid modeling by the warm-ion effects. These reduced core-resonant-fluctuation amplitudes compare favorably to edge coil measurements in the Madison Symmetric Torus (MST) reversed-field pinch [R. N. Dexter et al., Fusion Technol. 19, 131 (1991)]. The computations demonstrate that fluctuations induce both MHD- and Hall-dynamo emfs during relaxation events. The presence of a Hall-dynamo emf implies a fluctuation-induced Maxwell stress, and the simulation results show net transport of parallel momentum. The computed magnitude of force densities from the Maxwell and competing Reynolds stresses, and changes in the parallel flow profile, are qualitatively and semi-quantitatively similar to measurements during relaxation in MST.

Ecological speciation in an island snail: evidence for the parallel evolution of a novel ecotype and maintenance by ecologically dependent postzygotic isolation.

PubMed

Stankowski, Sean

2013-05-01

Speciation is the process by which reproductive isolation evolves between populations. Two general models of speciation have been proposed: ecological speciation, where reproductive barriers evolve due to ecologically based divergent selection, and mutation-order speciation, where populations fix different mutations as they adapt to similar selection pressures. I evaluate these alternative models and determine the progress of speciation in a diverse group of land snails, genus Rhagada, inhabiting Rosemary Island. A recently derived keeled-flat morphotype occupies two isolated rocky hills, while globose-shelled snails inhabit the surrounding plains. The study of one hill reveals that they are separated by a narrow hybrid zone. As predicted by ecological speciation theory, there are local and landscape level associations between shell shape and habitat, and the morphological transition coincides with a narrow ecotone between the two distinct environments. Microsatellite DNA revealed a cline of hybrid index scores much wider than the morphological cline, further supporting the ecological maintenance of the morphotypes. The hybrid zone does not run through an area of low population density, as is expected for mutation-order hybrid zones, and there is a unimodal distribution of phenotypes at the centre, suggesting that there is little or no prezygotic isolation. Instead, these data suggest that the ecotypes are maintained by ecologically dependent postzygotic isolation (i.e. ecological selection against hybrids). Mitochondrial and Microsatellite DNA indicate that the keeled-flat form evolved recently, and without major historical disruptions to gene flow. The data also suggest that the two keeled-flat populations, inhabiting similar rocky hills, have evolved in parallel. These snails provide a complex example of ecological speciation in its early stages. © 2013 Blackwell Publishing Ltd.

First-order finite-Larmor-radius fluid modeling of tearing and relaxation in a plasma pinch

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, J. R.; Tech-X Corporation, 5621 Arapahoe Ave., Suite A Boulder, Colorado 80303; Sovinec, C. R.

Drift and Hall effects on magnetic tearing, island evolution, and relaxation in pinch configurations are investigated using a non-reduced first-order finite-Larmor-radius (FLR) fluid model with the nonideal magnetohydrodynamics (MHD) with rotation, open discussion (NIMROD) code [C.R. Sovinec and J. R. King, J. Comput. Phys. 229, 5803 (2010)]. An unexpected result with a uniform pressure profile is a drift effect that reduces the growth rate when the ion sound gyroradius ({rho}{sub s}) is smaller than the tearing-layer width. This drift is present only with warm-ion FLR modeling, and analytics show that it arises from {nabla}B and poloidal curvature represented in themore » Braginskii gyroviscous stress. Nonlinear single-helicity computations with experimentally relevant {rho}{sub s} values show that the warm-ion gyroviscous effects reduce saturated-island widths. Computations with multiple nonlinearly interacting tearing fluctuations find that m = 1 core-resonant-fluctuation amplitudes are reduced by a factor of two relative to single-fluid modeling by the warm-ion effects. These reduced core-resonant-fluctuation amplitudes compare favorably to edge coil measurements in the Madison Symmetric Torus (MST) reversed-field pinch [R. N. Dexter et al., Fusion Technol. 19, 131 (1991)]. The computations demonstrate that fluctuations induce both MHD- and Hall-dynamo emfs during relaxation events. The presence of a Hall-dynamo emf implies a fluctuation-induced Maxwell stress, and the simulation results show net transport of parallel momentum. The computed magnitude of force densities from the Maxwell and competing Reynolds stresses, and changes in the parallel flow profile, are qualitatively and semi-quantitatively similar to measurements during relaxation in MST.« less

UHV-TEM/TED observation of Ag islands grown on Si( 1 1 1 ) 3× 3-Ag surface

NASA Astrophysics Data System (ADS)

Oshima, Yoshifumi; Nakade, Hiroyuki; Shigeki, Sinya; Hirayama, Hiroyuki; Takayanagi, Kunio

2001-11-01

Growths of Ag islands on Si(1 1 1)3×3-Ag surface at room temperature were observed by UHV transmission electron microscopy and diffraction. The Ag islands grown after six monolayer deposition had neither (1 0 0) nor (1 1 0) orientation, but had two complex epitaxial orientations dominantly. One was striped islands which gave rise to a diffraction pattern commensurate with the 3×3 lattice of the Si(1 1 1) surface. The other was the coagulated islands whose diffraction pattern indicated the Ag(1 -3 4) sheet grown parallel to the Si(1 1 1) surface.

Modulated heat pulse propagation and partial transport barriers in chaotic magnetic fields

DOE PAGES

del-Castillo-Negrete, Diego; Blazevski, Daniel

2016-04-01

Direct numerical simulations of the time dependent parallel heat transport equation modeling heat pulses driven by power modulation in 3-dimensional chaotic magnetic fields are presented. The numerical method is based on the Fourier formulation of a Lagrangian-Green's function method that provides an accurate and efficient technique for the solution of the parallel heat transport equation in the presence of harmonic power modulation. The numerical results presented provide conclusive evidence that even in the absence of magnetic flux surfaces, chaotic magnetic field configurations with intermediate levels of stochasticity exhibit transport barriers to modulated heat pulse propagation. In particular, high-order islands and remnants of destroyed flux surfaces (Cantori) act as partial barriers that slow down or even stop the propagation of heat waves at places where the magnetic field connection length exhibits a strong gradient. The key parameter ismore » $$\\gamma=\\sqrt{\\omega/2 \\chi_\\parallel}$$ that determines the length scale, $$1/\\gamma$$, of the heat wave penetration along the magnetic field line. For large perturbation frequencies, $$\\omega \\gg 1$$, or small parallel thermal conductivities, $$\\chi_\\parallel \\ll 1$$, parallel heat transport is strongly damped and the magnetic field partial barriers act as robust barriers where the heat wave amplitude vanishes and its phase speed slows down to a halt. On the other hand, in the limit of small $$\\gamma$$, parallel heat transport is largely unimpeded, global transport is observed and the radial amplitude and phase speed of the heat wave remain finite. Results on modulated heat pulse propagation in fully stochastic fields and across magnetic islands are also presented. In qualitative agreement with recent experiments in LHD and DIII-D, it is shown that the elliptic (O) and hyperbolic (X) points of magnetic islands have a direct impact on the spatio-temporal dependence of the amplitude and the time delay of modulated heat pulses.« less

Predictable evolution toward flightlessness in volant island birds.

PubMed

Wright, Natalie A; Steadman, David W; Witt, Christopher C

2016-04-26

Birds are prolific colonists of islands, where they readily evolve distinct forms. Identifying predictable, directional patterns of evolutionary change in island birds, however, has proved challenging. The "island rule" predicts that island species evolve toward intermediate sizes, but its general applicability to birds is questionable. However, convergent evolution has clearly occurred in the island bird lineages that have undergone transitions to secondary flightlessness, a process involving drastic reduction of the flight muscles and enlargement of the hindlimbs. Here, we investigated whether volant island bird populations tend to change shape in a way that converges subtly on the flightless form. We found that island bird species have evolved smaller flight muscles than their continental relatives. Furthermore, in 366 populations of Caribbean and Pacific birds, smaller flight muscles and longer legs evolved in response to increasing insularity and, strikingly, the scarcity of avian and mammalian predators. On smaller islands with fewer predators, birds exhibited shifts in investment from forelimbs to hindlimbs that were qualitatively similar to anatomical rearrangements observed in flightless birds. These findings suggest that island bird populations tend to evolve on a trajectory toward flightlessness, even if most remain volant. This pattern was consistent across nine families and four orders that vary in lifestyle, foraging behavior, flight style, and body size. These predictable shifts in avian morphology may reduce the physical capacity for escape via flight and diminish the potential for small-island taxa to diversify via dispersal.

Dynamic Scaling and Island Growth Kinetics in Pulsed Laser Deposition of SrTiO 3

DOE PAGES

Eres, Gyula; Tischler, J. Z.; Rouleau, C. M.; ...

2016-11-11

We use real-time diffuse surface x-ray diffraction to probe the evolution of island size distributions and its effects on surface smoothing in pulsed laser deposition (PLD) of SrTiO 3. In this study, we show that the island size evolution obeys dynamic scaling and two distinct regimes of island growth kinetics. Our data show that PLD film growth can persist without roughening despite thermally driven Ostwald ripening, the main mechanism for surface smoothing, being shut down. The absence of roughening is concomitant with decreasing island density, contradicting the prevailing view that increasing island density is the key to surface smoothing inmore » PLD. We also report a previously unobserved crossover from diffusion-limited to attachment-limited island growth that reveals the influence of nonequilibrium atomic level surface transport processes on the growth modes in PLD. We show by direct measurements that attachment-limited island growth is the dominant process in PLD that creates step flowlike behavior or quasistep flow as PLD “self-organizes” local step flow on a length scale consistent with the substrate temperature and PLD parameters.« less

Dynamic Scaling and Island Growth Kinetics in Pulsed Laser Deposition of SrTiO 3

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eres, Gyula; Tischler, J. Z.; Rouleau, C. M.

We use real-time diffuse surface x-ray diffraction to probe the evolution of island size distributions and its effects on surface smoothing in pulsed laser deposition (PLD) of SrTiO 3. In this study, we show that the island size evolution obeys dynamic scaling and two distinct regimes of island growth kinetics. Our data show that PLD film growth can persist without roughening despite thermally driven Ostwald ripening, the main mechanism for surface smoothing, being shut down. The absence of roughening is concomitant with decreasing island density, contradicting the prevailing view that increasing island density is the key to surface smoothing inmore » PLD. We also report a previously unobserved crossover from diffusion-limited to attachment-limited island growth that reveals the influence of nonequilibrium atomic level surface transport processes on the growth modes in PLD. We show by direct measurements that attachment-limited island growth is the dominant process in PLD that creates step flowlike behavior or quasistep flow as PLD “self-organizes” local step flow on a length scale consistent with the substrate temperature and PLD parameters.« less

Modeling Evolution of the Chandeleur Barrier Islands, Southeastern Louisiana: Initial Exploration of a Possible Threshold Crossing

NASA Astrophysics Data System (ADS)

Moore, L. J.; List, J. H.; Williams, S. J.

2007-12-01

Airborne photographic and lidar observations of the 72 km-long Chandeleur Island arc in southeastern Louisiana since August 2005 indicate that large volumes of sediment were removed from the islands during and following Hurricane Katrina and suggest that a return to pre-storm island configuration may be unlikely. Others have suggested, based on recent field observations, that the southern portion of the Chandeleur Islands may be showing signs of becoming an inner shelf shoal. In contrast to these observations, plentiful sand has been observed in the nearshore farther to the north; based on this finding it has been suggested that at least the northern portion of the Chandeleur Islands may be poised for recovery. Given the range of observations, it is unclear if Hurricane Katrina initiated a threshold crossing in the Chandeleurs causing the subaerial, landward- migrating barrier islands to begin evolving as submerged sand shoals. If a threshold crossing has not yet occurred and the Chandeleurs do recover from the impact of Hurricane Katrina, it remains uncertain how imminent a threshold crossing may be. To better understand the potential future evolution of the Chandeleur Islands and to assess the combination of factors that are likely to cause a threshold crossing in this environment, a series of initial model experiments are being conducted using the morphological-behavior model GEOMBEST. This model simulates the evolution of coastal morphology and stratigraphy resulting from changes in relative sea level and sediment supply, and provides insight into how barriers evolve over time scales ranging from decades to millennia. Vibracore logs, geophysical records, bathymetric surveys, and lidar surveys provide data necessary to design the model domain, while sediment budget studies, estimates of sea-level rise rates, and measurements of shoreline change rates provide input and calibration parameters. Late Holocene model runs simulate the evolution of 42 km-long North Chandeleur Island as it migrated from the distal end of the St. Bernard Delta to its modern position. Building on the late Holocene simulation, we present a series of initial, multi-decadal forward model experiments that assess the combination of factors, including relative sea-level rise rates, sediment supply rates, and geologic framework, that are likely to initiate a threshold crossing in the Chandeleur Islands.

Ancient geographical gaps and paleo-climate shape the phylogeography of an endemic bird in the sky islands of southern India.

PubMed

Robin, V V; Sinha, Anindya; Ramakrishnan, Uma

2010-10-13

Sky islands, formed by the highest reaches of mountain tracts physically isolated from one another, represent one of the biodiversity-rich regions of the world. Comparative studies of geographically isolated populations on such islands can provide valuable insights into the biogeography and evolution of species on these islands. The Western Ghats mountains of southern India form a sky island system, where the relationship between the island structure and the evolution of its species remains virtually unknown despite a few population genetic studies. We investigated how ancient geographic gaps and glacial cycles have partitioned genetic variation in modern populations of a threatened endemic bird, the White-bellied Shortwing Brachypteryx major, across the montane Shola forests on these islands and also inferred its evolutionary history. We used bayesian and maximum likelihood-based phylogenetic and population-genetic analyses on data from three mitochondrial markers and one nuclear marker (totally 2594 bp) obtained from 33 White-bellied Shortwing individuals across five islands. Genetic differentiation between populations of the species correlated with the locations of deep valleys in the Western Ghats but not with geographical distance between these populations. All populations revealed demographic histories consistent with population founding and expansion during the Last Glacial Maximum. Given the level of genetic differentiation north and south of the Palghat Gap, we suggest that these populations be considered two different taxonomic species. Our results show that the physiography and paleo-climate of this region historically resulted in multiple glacial refugia that may have subsequently driven the evolutionary history and current population structure of this bird. The first avian genetic study from this biodiversity hotspot, our results provide insights into processes that may have impacted the speciation and evolution of the endemic fauna of this region.

Late Neogene and Quaternary evolution of the northern Albemarle Embayment (mid-Atlantic continental margin, USA)

USGS Publications Warehouse

Mallinson, D.; Riggs, S.; Thieler, E.R.; Culver, S.; Farrell, K.; Foster, D.S.; Corbett, D.R.; Horton, B.; Wehmiller, J.F.

2005-01-01

Seismic surveys in the eastern Albemarle Sound, adjacent tributaries and the inner continental shelf define the regional geologic framework and provide insight into the sedimentary evolution of the northern North Carolina coastal system. Litho- and chronostratigraphic data are derived from eight drill sites on the Outer Banks barrier islands, and the Mobil #1 well in eastern Albemarle Sound. Within the study area, parallel-bedded, gently dipping Miocene beds occur at 95 to > 160 m below sea level (m bsl), and are overlain by a southward-thickening Pliocene unit characterized by steeply inclined, southward-prograding beds. The lower Pliocene unit consists of three seismic sequences. The 55–60 m thick Quaternary section unconformably overlies the Pliocene unit, and consists of 18 seismic sequences exhibiting numerous incised channel-fill facies. Shallow stratigraphy (< 40 m bsl) is dominated by complex fill patterns within the incised paleo-Roanoke River valley. Radiocarbon and amino-acid racemization (AAR) ages indicate that the valley-fill is latest Pleistocene to Holocene in age. At least six distinct valley-fill units are identified in the seismic data. Cores in the valley-fill contain a 3–6 m thick basal fluvial channel deposit that is overlain by a 15 m thick unit of interlaminated muds and sands of brackish water origin that exhibit increasing marine influence upwards. Organic materials within the interlaminated deposits have ages of 13–11 cal. ka. The interlaminated deposits within the valley are overlain by several units that comprise shallow marine sediments (bay-mouth and shoreface environments) that consist of silty, fine- to medium-grained sands containing open neritic foraminifera, suggesting that this area lacked a fronting barrier island system and was an open embayment from ∼10 ka to ∼4.5 ka. Seismic data show that initial infilling of the paleo-Roanoke River valley occurred from the north and west during the late Pleistocene and early Holocene. Later infilling occurred from the south and east and is characterized by a large shoal body (Colington Island and Shoals) and adjacent inlet fill. Establishment of a continuous barrier island system across the bay-mouth resulted in deposition of the latest phase of valley-fill, characterized by estuarine organic-rich muds.

Influence of asymmetric magnetic perturbation on the nonlinear evolution of double tearing modes

NASA Astrophysics Data System (ADS)

Xiong, G. Z.; Wang, L.; Li, X. Q.; Liu, H. F.; Tang, C. J.; Huang, J.; Zhang, X.; Wang, X. Q.

2017-06-01

The effects of asymmetric magnetic perturbation on the triggering and evolution of double tearing modes (DTMs) are investigated using nonlinear magnetohydrodynamics simulations in a slab geometry. We find that for reversed magnetic shear plasmas the resistive reconnection process induced by the initial perturbation at one rational surface can drive a new island at the other rational surface with the same mode number. The four typical states of the mode for the time evolution are found, and include: (i) a linear growth stage; (ii) a linear/nonlinear stable stage; (iii) an interactively driving stage; and (iv) a symmetric DTM stage. These differ from previous simulation results. Moreover, nonlinear DTM growth is found to strongly depend on the asymmetric magnetic perturbation, particularly in the early nonlinear phase. The initial perturbation strength scale of island width suggests that the left island enters into a Sweet-Parker growth process when the right island is sufficiently large to effectively drive the other. These results predict that although externally applied magnetic perturbations can suppress the neoclassical tearing mode they can also trigger new instabilities such as asymmetric DTMs.

Parallel evolution of passive and active defence in land snails.

PubMed

Morii, Yuta; Prozorova, Larisa; Chiba, Satoshi

2016-11-11

Predator-prey interactions are major processes promoting phenotypic evolution. However, it remains unclear how predation causes morphological and behavioural diversity in prey species and how it might lead to speciation. Here, we show that substantial divergence in the phenotypic traits of prey species has occurred among closely related land snails as a result of adaptation to predator attacks. This caused the divergence of defensive strategies into two alternatives: passive defence and active defence. Phenotypic traits of the subarctic Karaftohelix land snail have undergone radiation in northeast Asia, and distinctive morphotypes generally coexist in the same regions. In these land snails, we documented two alternative defence behaviours against predation by malacophagous beetles. Furthermore, the behaviours are potentially associated with differences in shell morphology. In addition, molecular phylogenetic analyses indicated that these alternative strategies against predation arose independently on the islands and on the continent suggesting that anti-predator adaptation is a major cause of phenotypic diversity in these snails. Finally, we suggest the potential speciation of Karaftohelix snails as a result of the divergence of defensive strategies into passive and active behaviours and the possibility of species radiation due to anti-predatory adaptations.

The shallow stratigraphy and sand resources offshore from Cat Island, Mississippi

USGS Publications Warehouse

Kindinger, Jack G.; Miselis, Jennifer L.; Buster, Noreen A.

2014-01-01

In collaboration with the U.S. Army Corps of Engineers, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center collected over 487 line kilometers (> 300 miles) of high-resolution geophysical data around Cat Island, Mississippi, to improve understanding of the island's geologic evolution and identify potential sand resources for coastal restoration. In addition, 40 vibracores were collected on and around the island, generating more than 350 samples for grain-size analysis. The results indicate that the geologic evolution of Cat Island has been influenced by deltaic, lagoonal/estuarine, tidal, and oceanographic processes, resulting in a stratigraphic record that is quite complex. The region north of the island is dominated by lagoonal/estuarine deposition, whereas the region south of the island is dominated by deltaic and tidal deposition. In general, the veneer of modern sediment surrounding the island is composed of newly deposited sediment and highly reworked relict sediments. The region east of the island shows the interplay of antecedent barrier-island change with delta development despite a significant ravinement of sediments. The data show from little to no modern sediment east of the island, exposing relict sediments at the seafloor. Finally, the data reveal four subaqueous sand units around the island. Two of the units are northwest of the modern island and one is southwest. Given the dominant, westward, longshore transport along the Mississippi and Alabama barrier islands, the geographic location of these three units suggests that they do not contribute to the modern sediment budget of Cat Island. The last unit is directly east of the island and represents the antecedent island platform that has supplied sand over geologic time for creation of the spits that form the eastern shoreline. Because of its location east of the island, the antecedent island unit may still supply sediment to the island today.

Predictable evolution toward flightlessness in volant island birds

PubMed Central

Wright, Natalie A.; Steadman, David W.; Witt, Christopher C.

2016-01-01

Birds are prolific colonists of islands, where they readily evolve distinct forms. Identifying predictable, directional patterns of evolutionary change in island birds, however, has proved challenging. The “island rule” predicts that island species evolve toward intermediate sizes, but its general applicability to birds is questionable. However, convergent evolution has clearly occurred in the island bird lineages that have undergone transitions to secondary flightlessness, a process involving drastic reduction of the flight muscles and enlargement of the hindlimbs. Here, we investigated whether volant island bird populations tend to change shape in a way that converges subtly on the flightless form. We found that island bird species have evolved smaller flight muscles than their continental relatives. Furthermore, in 366 populations of Caribbean and Pacific birds, smaller flight muscles and longer legs evolved in response to increasing insularity and, strikingly, the scarcity of avian and mammalian predators. On smaller islands with fewer predators, birds exhibited shifts in investment from forelimbs to hindlimbs that were qualitatively similar to anatomical rearrangements observed in flightless birds. These findings suggest that island bird populations tend to evolve on a trajectory toward flightlessness, even if most remain volant. This pattern was consistent across nine families and four orders that vary in lifestyle, foraging behavior, flight style, and body size. These predictable shifts in avian morphology may reduce the physical capacity for escape via flight and diminish the potential for small-island taxa to diversify via dispersal. PMID:27071105

Late Holocene chronology, origin, and evolution of the St. Bernard Shoals, Northern Gulf of Mexico, USA

NASA Astrophysics Data System (ADS)

Rogers, Bryan E.; Kulp, Mark A.; Miner, Michael D.

2009-12-01

Several shore-parallel marine sand bodies lie on the Louisiana continental shelf. They are Trinity Shoal, Ship Shoal, Outer Shoal, and the St. Bernard Shoals. These shoals mark the submerged positions of ancient shorelines associated with abandoned deltas. Three of these shoals are single elongate deposits. The fourth shoal, the St. Bernard Shoals, consists of a group of discrete sand bodies ranging in size from 44 to 0.05 km2, 25 km southeast of the Chandeleur Islands in 15-18 m of water. The St. Bernard Shoals are stratigraphically above the St. Bernard delta complex, which was active 2,500-1,800 years b. p. Understanding the evolution of the St. Bernard Shoals is necessary to reconstruct the Holocene chronology of the St. Bernard delta complex and the eastern Louisiana continental shelf. For this study, 47 vibracores and 400 km of shallow seismic reflection data collected in 1987 across the Louisiana shelf were analyzed. In June 2008, 384 km of higher-resolution seismic reflection data were acquired across the study area and appended to the preexisting datasets. Vibracores were integrated with seismic profiles to identify facies and their regional distribution. Our results demonstrate that the deltaic package stratigraphically below the St. Bernard Shoals is chronologically younger than the northern distributaries, but derived from the same trunk distributary channel (Bayou la Loutre). The river eventually bypassed the northern distributaries, and began to deposit sediment further onto the continental shelf. After abandonment, the overextended delta lobe was rapidly transgressed, creating a transgressive shoreline that eventually coalesced with earlier shorelines in the region to form the Chandeleur Islands. The St. Bernard Shoals formed by the reworking of the relict distributary deposits exposed on the inner to mid shelf during and subsequent to shoreface ravinement.

A comparative analysis of island floras challenges taxonomy-based biogeographical models of speciation.

PubMed

Igea, Javier; Bogarín, Diego; Papadopulos, Alexander S T; Savolainen, Vincent

2015-02-01

Speciation on islands, and particularly the divergence of species in situ, has long been debated. Here, we present one of the first, complete assessments of the geographic modes of speciation for the flora of a small oceanic island. Cocos Island (Costa Rica) is pristine; it is located 550 km off the Pacific coast of Central America. It harbors 189 native plant species, 33 of which are endemic. Using phylogenetic data from insular and mainland congeneric species, we show that all of the endemic species are derived from independent colonization events rather than in situ speciation. This is in sharp contrast to the results of a study carried out in a comparable system, Lord Howe Island (Australia), where as much as 8.2% of the plant species were the product of sympatric speciation. Differences in physiography and age between the islands may be responsible for the contrasting patterns of speciation observed. Importantly, comparing phylogenetic assessments of the modes of speciation with taxonomy-based measures shows that widely used island biogeography approaches overestimate rates of in situ speciation. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Testing the island effect on phenotypic diversification: insights from the Hemidactylus geckos of the Socotra Archipelago

PubMed Central

Garcia-Porta, Joan; Šmíd, Jiří; Sol, Daniel; Fasola, Mauro; Carranza, Salvador

2016-01-01

Island colonization is often assumed to trigger extreme levels of phenotypic diversification. Yet, empirical evidence suggests that it does not always so. In this study we test this hypothesis using a completely sampled mainland-island system, the arid clade of Hemidactylus, a group of geckos mainly distributed across Africa, Arabia and the Socotra Archipelago. To such purpose, we generated a new molecular phylogeny of the group on which we mapped body size and head proportions. We then explored whether island and continental taxa shared the same morphospace and differed in their disparities and tempos of evolution. Insular species produced the most extreme sizes of the radiation, involving accelerated rates of evolution and higher disparities compared with most (but not all) of the continental groups. In contrast, head proportions exhibited constant evolutionary rates across the radiation and similar disparities in islands compared with the continent. These results, although generally consistent with the notion that islands promote high morphological disparity, reveal at the same time a complex scenario in which different traits may experience different evolutionary patterns in the same mainland-island system and continental groups do not always present low levels of morphological diversification compared to insular groups. PMID:27071837

Testing the island effect on phenotypic diversification: insights from the Hemidactylus geckos of the Socotra Archipelago

NASA Astrophysics Data System (ADS)

Garcia-Porta, Joan; Šmíd, Jiří; Sol, Daniel; Fasola, Mauro; Carranza, Salvador

2016-04-01

Island colonization is often assumed to trigger extreme levels of phenotypic diversification. Yet, empirical evidence suggests that it does not always so. In this study we test this hypothesis using a completely sampled mainland-island system, the arid clade of Hemidactylus, a group of geckos mainly distributed across Africa, Arabia and the Socotra Archipelago. To such purpose, we generated a new molecular phylogeny of the group on which we mapped body size and head proportions. We then explored whether island and continental taxa shared the same morphospace and differed in their disparities and tempos of evolution. Insular species produced the most extreme sizes of the radiation, involving accelerated rates of evolution and higher disparities compared with most (but not all) of the continental groups. In contrast, head proportions exhibited constant evolutionary rates across the radiation and similar disparities in islands compared with the continent. These results, although generally consistent with the notion that islands promote high morphological disparity, reveal at the same time a complex scenario in which different traits may experience different evolutionary patterns in the same mainland-island system and continental groups do not always present low levels of morphological diversification compared to insular groups.

Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua.

PubMed

Manousaki, Tereza; Hull, Pincelli M; Kusche, Henrik; Machado-Schiaffino, Gonzalo; Franchini, Paolo; Harrod, Chris; Elmer, Kathryn R; Meyer, Axel

2013-02-01

The study of parallel evolution facilitates the discovery of common rules of diversification. Here, we examine the repeated evolution of thick lips in Midas cichlid fishes (the Amphilophus citrinellus species complex)-from two Great Lakes and two crater lakes in Nicaragua-to assess whether similar changes in ecology, phenotypic trophic traits and gene expression accompany parallel trait evolution. Using next-generation sequencing technology, we characterize transcriptome-wide differential gene expression in the lips of wild-caught sympatric thick- and thin-lipped cichlids from all four instances of repeated thick-lip evolution. Six genes (apolipoprotein D, myelin-associated glycoprotein precursor, four-and-a-half LIM domain protein 2, calpain-9, GTPase IMAP family member 8-like and one hypothetical protein) are significantly underexpressed in the thick-lipped morph across all four lakes. However, other aspects of lips' gene expression in sympatric morphs differ in a lake-specific pattern, including the magnitude of differentially expressed genes (97-510). Generally, fewer genes are differentially expressed among morphs in the younger crater lakes than in those from the older Great Lakes. Body shape, lower pharyngeal jaw size and shape, and stable isotopes (δ(13)C and δ(15)N) differ between all sympatric morphs, with the greatest differentiation in the Great Lake Nicaragua. Some ecological traits evolve in parallel (those related to foraging ecology; e.g. lip size, body and head shape) but others, somewhat surprisingly, do not (those related to diet and food processing; e.g. jaw size and shape, stable isotopes). Taken together, this case of parallelism among thick- and thin-lipped cichlids shows a mosaic pattern of parallel and nonparallel evolution. © 2012 Blackwell Publishing Ltd.

33 CFR 110.72 - Blackhole Creek, Md.

Code of Federal Regulations, 2010 CFR

2010-07-01

... tip of an unnamed island located 0.16 mile upstream from the mouth of the creek approximately 660 feet to the west shore of the creek; northwest of a line ranging from the southwesterly tip of the island... line 100 feet from and parallel to the shore of the creek to its intersection with the south property...

33 CFR 110.72 - Blackhole Creek, Md.

Code of Federal Regulations, 2011 CFR

2011-07-01

... tip of an unnamed island located 0.16 mile upstream from the mouth of the creek approximately 660 feet to the west shore of the creek; northwest of a line ranging from the southwesterly tip of the island... line 100 feet from and parallel to the shore of the creek to its intersection with the south property...

33 CFR 110.72 - Blackhole Creek, Md.

Code of Federal Regulations, 2012 CFR

2012-07-01

... tip of an unnamed island located 0.16 mile upstream from the mouth of the creek approximately 660 feet to the west shore of the creek; northwest of a line ranging from the southwesterly tip of the island... line 100 feet from and parallel to the shore of the creek to its intersection with the south property...

Geomorphologic Evolution of Barrier Islands along the Northern U.S. Gulf of Mexico and Implications for Engineering Design in Barrier Restoration

DTIC Science & Technology

2009-01-01

Chandeleur Is- lands). Finally, Stage 3 occurs when erosion and subsidence reduce the barrier island to a subaqueous inner shelf shoal (e.g., Ship Shoal...exception is the western- most island, Cat Island, which is primarily protected from offshore waves from the incident wave sheltering of the Chandeleur and...KAHN and ROBERTS (1982) discussed the morpho- logic response of the Chandeleur barrier islands to Hurricane Frederic, a powerful storm that made

Tectonic Evolution and Midplate Volcanism in the South Pacific

DTIC Science & Technology

1999-02-01

documented in the South- ern Austral Island region of the South Pacific. A twelve degree clock- wise change in Pacific-Farallon relative motion occurred...and spreading fabric orientation. At the southeastern end of the Cook-Austral Island chain, multiple episodes of volcanism have left a diverse...in the flexural moat of the Austral Islands , probably associated with Austral Islands volcanism, which may contribute a significant amount of

The repeated evolution of large seeds on islands.

PubMed

Kavanagh, Patrick H; Burns, Kevin C

2014-07-07

Several plant traits are known to evolve in predictable ways on islands. For example, herbaceous species often evolve to become woody and species frequently evolve larger leaves, regardless of growth form. However, our understanding of how seed sizes might evolve on islands lags far behind other plant traits. Here, we conduct the first test for macroevolutionary patterns of seed size on islands. We tested for differences in seed size between 40 island-mainland taxonomic pairings from four island groups surrounding New Zealand. Seed size data were collected in the field and then augmented by published seed descriptions to produce a more comprehensive dataset. Seed sizes of insular plants were consistently larger than mainland relatives, even after accounting for differences in growth form, dispersal mode and evolutionary history. Selection may favour seed size increases on islands to reduce dispersibility, as long-distance dispersal may result in propagule mortality at sea. Alternatively, larger seeds tend to generate larger seedlings, which are more likely to establish and outcompete neighbours. Our results indicate there is a general tendency for the evolution of large seeds on islands, but the mechanisms responsible for this evolutionary pathway have yet to be fully resolved. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Spatial variation in climate mediates gene flow across an island archipelago.

PubMed

Logan, Michael L; Duryea, M C; Molnar, Orsolya R; Kessler, Benji J; Calsbeek, Ryan

2016-10-01

High levels of gene flow among partially isolated populations can overwhelm selection and limit local adaptation. This process, known as "gene swamping," can homogenize genetic diversity among populations and reduce the capacity of a species to withstand rapid environmental change. We studied brown anole lizards (Anolis sagrei) distributed across seven islands in The Bahamas. We used microsatellite markers to estimate gene flow among islands and then examined the correlation between thermal performance and island temperature. The thermal optimum for sprint performance was correlated with both mean and maximum island temperature, whereas performance breadth was not correlated with any measure of temperature variation. Gene flow between islands decreased as the difference between mean island temperatures increased, even when those islands were adjacent to one another. These data suggest that phenotypic variation is the result of either (1) local genetic adaptation with selection against immigrants maintaining variation in the thermal optimum, (2) irreversible forms of adaptive plasticity such that immigrants have reduced fitness, or (3) an interaction between fixed genetic differences and plasticity. In general, the patterns of gene flow we observed suggest that local thermal environments represent important ecological filters that can mediate gene flow on relatively fine geographic scales. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

MBE Growth of InN/GaN(0001) and Shape Transitions of InN islands

NASA Astrophysics Data System (ADS)

Cao, Yongge; Xie, Maohai; Liu, Ying; Ng, Y. F.

2003-03-01

Plasma-assisted molecular-beam epitaxial growth of InN on GaN(0001) is investigated. Both layer-by-layer and Stranski-Krastanov (SK) growth modes are observed under different growth windows. Strain relaxation is studied by real-time recording of the in-plane lattice spacing evolutions on RHEED pattern, which suggest a gradual relaxation of the strain in InN film commenced during the first bilayer (BL) deposition and almost completed after 2-4 BLs. For SK growth, 3D islanding initiates after the strain has mostly been relieved, presumably by dislocations. Based on statistical analysis, the shape transitions of 3D islands are firstly observed in the III-nitrides system. The InN islands transform gradually from pyramids to platelets with increasing of In flux. Under In-rich growth condition, the reverse trend of island shape evolution dependence on volume size, compared with Equilibrium Crystal Shape (ECS) theory, is induced by the Indium self-surfactant effects, in which Indium adlayer on the top surface of InN islands will depress the thermodynamic driving force for the vertical growth of 3D islands. Lateral growth of 3D islands is not only the result of kinetic process but also favored by thermodynamics while Indium self-surfactant exist.

Coastal bathymetry data collected in June 2014 from Fire Island, New York—The wilderness breach and shoreface

USGS Publications Warehouse

Nelson, Timothy R.; Miselis, Jennifer L.; Hapke, Cheryl J.; Wilson, Kathleen E.; Henderson, Rachel E.; Brenner, Owen T.; Reynolds, Billy J.; Hansen, Mark E.

2016-08-02

Scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, collected bathymetric data along the upper shoreface and within the wilderness breach at Fire Island, New York, in June 2014. The U.S. Geological Survey is involved in a post-Hurricane Sandy effort to map and monitor the morphologic evolution of the shoreface along Fire Island and model the evolution of the wilderness breach as a part of the Hurricane Sandy Supplemental Project GS2-2B. During this study, bathymetry was collected with single-beam echo sounders and global positioning systems, mounted to personal watercraft, along the Fire Island shoreface and within the wilderness breach. Additional bathymetry was collected using backpack global positioning systems along the flood shoals and shallow channels within the wilderness breach.

Independent Axes of Genetic Variation and Parallel Evolutionary Divergence Of Opercle Bone Shape in Threespine Stickleback

PubMed Central

Kimmel, Charles B.; Cresko, William A.; Phillips, Patrick C.; Ullmann, Bonnie; Currey, Mark; von Hippel, Frank; Kristjánsson, Bjarni K.; Gelmond, Ofer; McGuigan, Katrina

2014-01-01

Evolution of similar phenotypes in independent populations is often taken as evidence of adaptation to the same fitness optimum. However, the genetic architecture of traits might cause evolution to proceed more often toward particular phenotypes, and less often toward others, independently of the adaptive value of the traits. Freshwater populations of Alaskan threespine stickleback have repeatedly evolved the same distinctive opercle shape after divergence from an oceanic ancestor. Here we demonstrate that this pattern of parallel evolution is widespread, distinguishing oceanic and freshwater populations across the Pacific Coast of North America and Iceland. We test whether this parallel evolution reflects genetic bias by estimating the additive genetic variance– covariance matrix (G) of opercle shape in an Alaskan oceanic (putative ancestral) population. We find significant additive genetic variance for opercle shape and that G has the potential to be biasing, because of the existence of regions of phenotypic space with low additive genetic variation. However, evolution did not occur along major eigenvectors of G, rather it occurred repeatedly in the same directions of high evolvability. We conclude that the parallel opercle evolution is most likely due to selection during adaptation to freshwater habitats, rather than due to biasing effects of opercle genetic architecture. PMID:22276538

Source-to-Sink System Evolution as Recorded in Clastic Facies in Two New Zealand Examples: the Bounty System of South Island and the Waipaoa System of North Island

NASA Astrophysics Data System (ADS)

Marsaglia, K. M.

2010-12-01

New Zealand river sources and their submarine sinks are excellent examples for modeling source-to-sink systems. In particular, the sand fractions of these systems can be used as tracers to document links and/or disconnects between fluvial, shelf, slope, and bathyal components. Within any given system, the ability to use sand as a tracer depends on the nature of the rocks exposed in source river drainage basins. In evolving systems, the potential for erosional unroofing, change of outcrop lithology through time, can be important. Additionally, the ability of a given lithology to generate sediment of a certain size may also vary. For example in the New Zealand examples, Cenozoic mudstones generate mostly mud but can liberate recycled sand grains (if present), as well as a smaller proportion of mudstone lithic fragments depending on degree of mudstone induration; schist generates copious sand and quartz-vein pebbles; and thin-bedded sandy turbidites can generate significant gravel, as well as mud and sand. Sediment production mode also comes into play with glacial processes (South Island) generating rock flour, as well as coarser debris. The major outcropping unit across both islands is a sedimentary to metasedimentary forearc succession, the Torlesse Terrane. It served as the protolith of the Otago schist (South Island) and the source of detritus for Cretaceous and Cenozoic sedimentary units on both islands. Local magmatism also supplied sand-sized material: intraplate (South Island) volcanism produced intrabasinal epiclastic debris and magmatic arc (North Island) volcanism produced extrabasinal pyroclastic debris. Various lithologies have characteristic detrital signatures. For example, in the Cenozoic units of the Waipaoa system, Pliocene calcareous mudstone fragments are key lithic components in tracing sediment transport from source-to sink, whereas the major fingerprint of Otago schist input into the Bounty System of South Island is mica. Critical to defining sedimentary budgets in both New Zealand systems is defining the net proportion of dip-fed vs. strike-fed clastic components. The former are supplied directly to the system by coast-perpendicular rivers, and the latter are transported into or out of the system by coast-parallel currents (e.g., longshore, shelf, slope). Tectonic events in the fluvial drainage basin can also have major influences on the supply of sediment to offshore basins. There is evidence for lacustrine sediment traps in each New Zealand system and evidence, in at least one case, that they modified sediment input to the marine part of the system (Bounty Fan).

Molecular pathways to parallel evolution: I. Gene nexuses and their morphological correlates.

PubMed

Zuckerkandl, E

1994-12-01

Aspects of the regulatory interactions among genes are probably as old as most genes are themselves. Correspondingly, similar predispositions to changes in such interactions must have existed for long evolutionary periods. Features of the structure and the evolution of the system of gene regulation furnish the background necessary for a molecular understanding of parallel evolution. Patently "unrelated" organs, such as the fat body of a fly and the liver of a mammal, can exhibit fractional homology, a fraction expected to become subject to quantitation. This also seems to hold for different organs in the same organism, such as wings and legs of a fly. In informational macromolecules, on the other hand, homology is indeed all or none. In the quite different case of organs, analogy is expected usually to represent attenuated homology. Many instances of putative convergence are likely to turn out to be predominantly parallel evolution, presumably including the case of the vertebrate and cephalopod eyes. Homology in morphological features reflects a similarity in networks of active genes. Similar nexuses of active genes can be established in cells of different embryological origins. Thus, parallel development can be considered a counterpart to parallel evolution. Specific macromolecular interactions leading to the regulation of the c-fos gene are given as an example of a "controller node" defined as a regulatory unit. Quantitative changes in gene control are distinguished from relational changes, and frequent parallelism in quantitative changes is noted in Drosophila enzymes. Evolutionary reversions in quantitative gene expression are also expected. The evolution of relational patterns is attributed to several distinct mechanisms, notably the shuffling of protein domains. The growth of such patterns may in part be brought about by a particular process of compensation for "controller gene diseases," a process that would spontaneously tend to lead to increased regulatory and organismal complexity. Despite the inferred increase in gene interaction complexity, whose course over evolutionary time is unknown, the number of homology groups for the functional and structural protein units designated as domains has probably remained rather constant, even as, in some of its branches, evolution moved toward "higher" organisms. In connection with this process, the question is raised of parallel evolution within the purview of activating and repressing master switches and in regard to the number of levels into which the hierarchies of genic master switches will eventually be resolved.

Formation and evolution of ripples on ion-irradiated semiconductor surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kang, M.; Wu, J. H.; Ye, W.

We have examined the formation and evolution of ripples on focused-ion-beam (FIB) irradiated compound semiconductor surfaces. Using initially normal-incidence Ga{sup +} FIB irradiation of InSb, we tuned the local beam incidence angle (θ{sub eff}) by varying the pitch and/or dwell time. For single-pass FIB irradiation, increasing θ{sub eff} induces morphological evolution from pits and islands to ripples to featureless surfaces. Multiple-pass FIB irradiation of the rippled surfaces at a fixed θ{sub eff} leads to island formation on the ripple crests, followed by nanorod (NR) growth. This ripple-NR transition provides an alternative approach for achieving dense arrays of NRs.

Geologic control on the evolution of the inner shelf morphology offshore of the Mississippi barrier islands, northern Gulf of Mexico, USA

USGS Publications Warehouse

Flocks, James G.; Kindinger, Jack G.; Kelso, Kyle W.

2015-01-01

Between 2008 and 2013, high-resolution geophysical surveys were conducted around the Mississippi barrier islands and offshore. The sonar surveys included swath and single-beam bathymetry, sidescan, and chirp subbottom data collection. The geophysical data were groundtruthed using vibracore sediment collection. The results provide insight into the evolution of the inner shelf and the relationship between the near surface geologic framework and the morphology of the coastal zone. This study focuses on the buried Pleistocene fluvial deposits and late Holocene shore-oblique sand ridges offshore of Petit Bois Island and Petit Bois Pass. Prior to this study, the physical characteristics, evolution, and interrelationship of the ridges between both the shelf geology and the adjacent barrier island platform had not been evaluated. Numerous studies elsewhere along the coastal margin attribute shoal origin and sand-ridge evolution to hydrodynamic processes in shallow water (<20 m). Here we characterize the correlation between the geologic framework and surface morphology and demonstrate that the underlying stratigraphy must also be considered when developing an evolutionary conceptual model. It is important to understand this near surface, nearshore dynamic in order to understand how the stratigraphy influences the long-term response of the coastal zone to sea-level rise. The study also contributes to a growing body of work characterizing shore-oblique sand ridges which, along with the related geology, are recognized as increasingly important components to a nearshore framework whose origins and evolution must be understood and inventoried to effectively manage the coastal zone.

Geologic control on the evolution of the inner shelf morphology offshore of the Mississippi barrier islands, northern Gulf of Mexico, USA

NASA Astrophysics Data System (ADS)

Flocks, James G.; Kindinger, Jack L.; Kelso, Kyle W.

2015-06-01

Between 2008 and 2013, high-resolution geophysical surveys were conducted around the Mississippi barrier islands and offshore. The sonar surveys included swath and single-beam bathymetry, sidescan, and chirp subbottom data collection. The geophysical data were groundtruthed using vibracore sediment collection. The results provide insight into the evolution of the inner shelf and the relationship between the near surface geologic framework and the morphology of the coastal zone. This study focuses on the buried Pleistocene fluvial deposits and late Holocene shore-oblique sand ridges offshore of Petit Bois Island and Petit Bois Pass. Prior to this study, the physical characteristics, evolution, and interrelationship of the ridges between both the shelf geology and the adjacent barrier island platform had not been evaluated. Numerous studies elsewhere along the coastal margin attribute shoal origin and sand-ridge evolution to hydrodynamic processes in shallow water (<20 m). Here we characterize the correlation between the geologic framework and surface morphology and demonstrate that the underlying stratigraphy must also be considered when developing an evolutionary conceptual model. It is important to understand this near surface, nearshore dynamic in order to understand how the stratigraphy influences the long-term response of the coastal zone to sea-level rise. The study also contributes to a growing body of work characterizing shore-oblique sand ridges which, along with the related geology, are recognized as increasingly important components to a nearshore framework whose origins and evolution must be understood and inventoried to effectively manage the coastal zone.

The effect of sheared toroidal rotation on pressure driven magnetic islands in toroidal plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hegna, C. C.

2016-05-15

The impact of sheared toroidal rotation on the evolution of pressure driven magnetic islands in tokamak plasmas is investigated using a resistive magnetohydrodynamics model augmented by a neoclassical Ohm's law. Particular attention is paid to the asymptotic matching data as the Mercier indices are altered in the presence of sheared flow. Analysis of the nonlinear island Grad-Shafranov equation shows that sheared flows tend to amplify the stabilizing pressure/curvature contribution to pressure driven islands in toroidal tokamaks relative to the island bootstrap current contribution. As such, sheared toroidal rotation tends to reduce saturated magnetic island widths.

The effect of pre-existing islands on disruption mitigation in MHD simulations of DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izzo, V. A.

Locked-modes are the most likely cause of disruptions in ITER, so large islands are expected to be common when the ITER disruption mitigation system is deployed. MHD modeling of disruption mitigation by massive gas injection is carried out for DIII-D plasmas with stationary, pre-existing islands. Results show that the magnetic topology at the q=2 surface can affect the parallel spreading of injected impurities, and that, in particular, the break-up of large 2/1 islands into smaller 4/2 islands chains can favorably affect mitigation metrics. The direct imposition of a 4/2 mode is found to have similar results to the case inmore » which the 4/2 harmonic grows spontaneously.« less

The effect of pre-existing islands on disruption mitigation in MHD simulations of DIII-D

DOE PAGES

Izzo, V. A.

2017-02-27

Locked-modes are the most likely cause of disruptions in ITER, so large islands are expected to be common when the ITER disruption mitigation system is deployed. MHD modeling of disruption mitigation by massive gas injection is carried out for DIII-D plasmas with stationary, pre-existing islands. Results show that the magnetic topology at the q=2 surface can affect the parallel spreading of injected impurities, and that, in particular, the break-up of large 2/1 islands into smaller 4/2 islands chains can favorably affect mitigation metrics. The direct imposition of a 4/2 mode is found to have similar results to the case inmore » which the 4/2 harmonic grows spontaneously.« less

Evolving binary classifiers through parallel computation of multiple fitness cases.

PubMed

Cagnoni, Stefano; Bergenti, Federico; Mordonini, Monica; Adorni, Giovanni

2005-06-01

This paper describes two versions of a novel approach to developing binary classifiers, based on two evolutionary computation paradigms: cellular programming and genetic programming. Such an approach achieves high computation efficiency both during evolution and at runtime. Evolution speed is optimized by allowing multiple solutions to be computed in parallel. Runtime performance is optimized explicitly using parallel computation in the case of cellular programming or implicitly taking advantage of the intrinsic parallelism of bitwise operators on standard sequential architectures in the case of genetic programming. The approach was tested on a digit recognition problem and compared with a reference classifier.

Island Rule, quantitative genetics and brain–body size evolution in Homo floresiensis

PubMed Central

2017-01-01

Colonization of islands often activate a complex chain of adaptive events that, over a relatively short evolutionary time, may drive strong shifts in body size, a pattern known as the Island Rule. It is arguably difficult to perform a direct analysis of the natural selection forces behind such a change in body size. Here, we used quantitative evolutionary genetic models, coupled with simulations and pattern-oriented modelling, to analyse the evolution of brain and body size in Homo floresiensis, a diminutive hominin species that appeared around 700 kya and survived up to relatively recent times (60–90 kya) on Flores Island, Indonesia. The hypothesis of neutral evolution was rejected in 97% of the simulations, and estimated selection gradients are within the range found in living natural populations. We showed that insularity may have triggered slightly different evolutionary trajectories for body and brain size, which means explaining the exceedingly small cranial volume of H. floresiensis requires additional selective forces acting on brain size alone. Our analyses also support previous conclusions that H. floresiensis may be most likely derived from an early Indonesian H. erectus, which is coherent with currently accepted biogeographical scenario for Homo expansion out of Africa. PMID:28637851

Island Rule, quantitative genetics and brain-body size evolution in Homo floresiensis.

PubMed

Diniz-Filho, José Alexandre Felizola; Raia, Pasquale

2017-06-28

Colonization of islands often activate a complex chain of adaptive events that, over a relatively short evolutionary time, may drive strong shifts in body size, a pattern known as the Island Rule. It is arguably difficult to perform a direct analysis of the natural selection forces behind such a change in body size. Here, we used quantitative evolutionary genetic models, coupled with simulations and pattern-oriented modelling, to analyse the evolution of brain and body size in Homo floresiensis , a diminutive hominin species that appeared around 700 kya and survived up to relatively recent times (60-90 kya) on Flores Island, Indonesia. The hypothesis of neutral evolution was rejected in 97% of the simulations, and estimated selection gradients are within the range found in living natural populations. We showed that insularity may have triggered slightly different evolutionary trajectories for body and brain size, which means explaining the exceedingly small cranial volume of H. floresiensis requires additional selective forces acting on brain size alone. Our analyses also support previous conclusions that H. floresiensis may be most likely derived from an early Indonesian H. erectus , which is coherent with currently accepted biogeographical scenario for Homo expansion out of Africa. © 2017 The Author(s).

The island rule in large mammals: paleontology meets ecology.

PubMed

Raia, Pasquale; Meiri, Shai

2006-08-01

The island rule is the phenomenon of the miniaturization of large animals and the gigantism of small animals on islands, with mammals providing the classic case studies. Several explanations for this pattern have been suggested, and departures from the predictions of this rule are common among mammals of differing body size, trophic habits, and phylogenetic affinities. Here we offer a new explanation for the evolution of body size of large insular mammals, using evidence from both living and fossil island faunal assemblages. We demonstrate that the extent of dwarfism in ungulates depends on the existence of competitors and, to a lesser extent, on the presence of predators. In contrast, competition and predation have little or no effect on insular carnivore body size, which is influenced by the nature of the resource base. We suggest dwarfism in large herbivores is an outcome of the fitness increase resulting from the acceleration of reproduction in low-mortality environments. Carnivore size is dependent on the abundance and size of their prey. Size evolution of large mammals in different trophic levels has different underlying mechanisms, resulting in different patterns. Absolute body size may be only an indirect predictor of size evolution, with ecological interactions playing a major role.

Curious parallels and curious connections--phylogenetic thinking in biology and historical linguistics.

PubMed

Atkinson, Quentin D; Gray, Russell D

2005-08-01

In The Descent of Man (1871), Darwin observed "curious parallels" between the processes of biological and linguistic evolution. These parallels mean that evolutionary biologists and historical linguists seek answers to similar questions and face similar problems. As a result, the theory and methodology of the two disciplines have evolved in remarkably similar ways. In addition to Darwin's curious parallels of process, there are a number of equally curious parallels and connections between the development of methods in biology and historical linguistics. Here we briefly review the parallels between biological and linguistic evolution and contrast the historical development of phylogenetic methods in the two disciplines. We then look at a number of recent studies that have applied phylogenetic methods to language data and outline some current problems shared by the two fields.

Galapagos: Darwin, evolution, and ENT.

PubMed

Bluestone, Charles D

2009-10-01

This year is especially important in the history of the theory of evolution; 2009 is the bicentennial anniversary of the birth of Charles Darwin and the sesquicentennial anniversary of his publication, The Origin of Species. Darwin visited the Galapagos Islands as a young man, which greatly influenced his thinking. My son Jim and I had the good fortune to visit these islands in January 2009 and see firsthand what led Darwin to arrive at his monumental insights into the origins of life on this planet. I have described my observations and related some of this experience to the ear, nose, and throat, albeit with whimsy in several instances. Nonetheless, some of the adaptations in the animals on these unique islands may have bearing on my hypotheses related to the incidence and pathogenesis of otitis media in humans. It is hoped the reader will share my enthusiasm for the experience we had on these fantastic islands and tour them in the future.

The evolution of island gigantism and body size variation in tortoises and turtles

PubMed Central

Jaffe, Alexander L.; Slater, Graham J.; Alfaro, Michael E.

2011-01-01

Extant chelonians (turtles and tortoises) span almost four orders of magnitude of body size, including the startling examples of gigantism seen in the tortoises of the Galapagos and Seychelles islands. However, the evolutionary determinants of size diversity in chelonians are poorly understood. We present a comparative analysis of body size evolution in turtles and tortoises within a phylogenetic framework. Our results reveal a pronounced relationship between habitat and optimal body size in chelonians. We found strong evidence for separate, larger optimal body sizes for sea turtles and island tortoises, the latter showing support for the rule of island gigantism in non-mammalian amniotes. Optimal sizes for freshwater and mainland terrestrial turtles are similar and smaller, although the range of body size variation in these forms is qualitatively greater. The greater number of potential niches in freshwater and terrestrial environments may mean that body size relationships are more complicated in these habitats. PMID:21270022

From 3D to 4D seismic tomography at El Hierro Island (Canary Islands, Spain)

NASA Astrophysics Data System (ADS)

Garcia-Yeguas, A.; Koulakov, I.; Jakovlev, A.; Ibáñez, J. M.

2012-04-01

In this work we are going to show the advantages of a dynamic tomography 4D, versus a static image 3D related with a volcanic reactivation and eruption at El Hierro island (Canary Islands, Spain). In this process a high number of earthquakes before and during the eruptive processes have been registered. We are going to show a 3D image as an average of the velocity structure and then the characteristics and physical properties on the medium, including the presence or not of magma. This image will be complemented with its evolution along the time, observing its volcanic dynamic and its influence over the medium properties, including its power as an important element on early warnings protocols. After more than forty years of quiet at Canary Islands, since 1971 with Teneguía eruption at La Palma Island, and more than 200 years on El Hierro Island (The last eruption known at El Hierro took place in 1793, volcán de Lomo Negro), on 19th July on 2011 the Spanish seismic national network, administered by IGN (Instituto Geográfico Nacional), detected an increase of local seismic activity below El Hierro island (Canary Islands, Spain). Since this moment an intense swarm took place, with more than 11000 events, until 11th December, with magnitudes (MLg) from 0.2 to 4.4. In this period two eruptive processes have been declared in front of the South coast of El Hierro island, and they have not finished yet. This seismic swarm has allowed carrying out a 3D seismic tomography, using P and S waves traveltimes. It has showed a low velocity from the North to the South. On the other hand, we have performed a 4D seismic tomography, taking the events occurred at different intervals of time. We can observe the evolution of the negative anomaly along the time, from the North to the South, where has taken place La Restinga submarine eruption. 4D seismic tomography is an innovative and powerful tool able to show the evolution in time of a volcanic process.

Interacting tilt and kink instabilities in repelling current channels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keppens, R.; Porth, O.; Xia, C., E-mail: rony.keppens@wis.kuleuven.be

2014-11-01

We present a numerical study in resistive magnetohydrodynamics (MHD) where the initial equilibrium configuration contains adjacent, oppositely directed, parallel current channels. Since oppositely directed current channels repel, the equilibrium is liable to an ideal magnetohydrodynamic tilt instability. This tilt evolution, previously studied in planar settings, involves two magnetic islands or flux ropes, which on Alfvénic timescales undergo a combined rotation and separation. This in turn leads to the creation of (near) singular current layers, posing severe challenges to numerical approaches. Using our open-source grid-adaptive MPI-AMRVAC software, we revisit the planar evolution case in compressible MHD, as well as its extensionmore » to two-and-a-half-dimensional (2.5D) and full three-dimensional (3D) scenarios. As long as the third dimension can be ignored, pure tilt evolutions result that are hardly affected by out of plane magnetic field components. In all 2.5D runs, our simulations do show secondary tearing type disruptions throughout the near singular current sheets in the far nonlinear saturation regime. In full 3D runs, both current channels can be liable to additional ideal kink deformations. We discuss the effects of having both tilt and kink instabilities acting simultaneously in the violent, reconnection-dominated evolution. In 3D, both the tilt and the kink instabilities can be stabilized by tension forces. As a concrete space plasma application, we argue that interacting tilt-kink instabilities in repelling current channels provide a novel route to initiate solar coronal mass ejections, distinctly different from the currently favored pure kink or torus instability routes.« less

Monitoring and Modelling the Rapid Evolution of Earth's Newest Volcanic Island: Hunga Tonga Hunga Ha'apai (Tonga) Using High Spatial Resolution Satellite Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garvin, James B.; Slayback, Daniel A.; Ferrini, Vi

2018-04-16

We have monitored a newly-erupted surtseyan volcanic island in the Kingdom of Tonga, unofficially known as Hunga Tonga Hunga Ha’apai (HTHH), by means of very high-resolution satellite observations. The new ~1.8 km2 island formed as a tuff cone over the course of a month-long hydro-volcanic eruption in early 2015 in the Tonga-Kermadec Islands volcanic arc. Such tephra-dominated eruptions usually produce fragile subaerial landscapes that wash away rapidly due to marine abrasion, as documented in 2009. Our measured rates of erosion are five to twenty times greater than observed at Surtsey (Iceland). Preliminary measurements of the topographic expression of the primarymore » tuff cone from the past ~ 30 months suggest an extended lifetime of at least ~ 6.5 years (and potentially up to 29 years), documenting details of its landscape evolution using satellite and ship-based remote sensing approaches never-before available at such scales for this type of newly-formed island. A new volcanic island in the southwestern Pacific Ocean that formed by means of an eruption style similar to that of Surtsey (Iceland) was monitored and observed via high resolution satellite imaging for over ~30 months since its time of formation in early 2015. This island, unofficially named Hunga Tonga Hunga Ha'apai (HTHH), was not expected to persist as land for more than a few months, but our observations have documented its lifetime for 30 months. Using topography derived from high resolution satellite images, the above-sea-level volume of the island was measured over time, leading to a "volumetric" erosion rate that was compared with other oceanic islands. The HTHH island is disappearing five times (or more) faster than Surtsey, but much slower than typical models predict, allowing detailed measurement of its erosional history at new spatial scales. Regional submarine topography (bathymetry) shows that shallow-water topology may be an important factor in explaining the unexpected lifetime of this new island, together with the likelihood of internal strengthening by hydrothermal mineralization. The stages of erosion of the HTHH island may have implications for similar landforms discovered on Mars and their formation and evolution.« less

Monitoring and Modeling the Rapid Evolution of Earth's Newest Volcanic Island: Hunga Tonga Hunga Ha'apai (Tonga) Using High Spatial Resolution Satellite Observations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garvin, J. B.; Slayback, D. A.; Ferrini, V.

We have monitored a newly-erupted surtseyan volcanic island in the Kingdom of Tonga, unofficially known as Hunga Tonga Hunga Ha’apai (HTHH), by means of very high-resolution satellite observations. The new ~1.8 km2 island formed as a tuff cone over the course of a month-long hydro-volcanic eruption in early 2015 in the Tonga-Kermadec Islands volcanic arc. Such tephra-dominated eruptions usually produce fragile subaerial landscapes that wash away rapidly due to marine abrasion, as documented in 2009. Our measured rates of erosion are five to twenty times greater than observed at Surtsey (Iceland). Preliminary measurements of the topographic expression of the primarymore » tuff cone from the past ~ 30 months suggest an extended lifetime of at least ~ 6.5 years (and potentially up to 29 years), documenting details of its landscape evolution using satellite and ship-based remote sensing approaches never-before available at such scales for this type of newly-formed island. A new volcanic island in the southwestern Pacific Ocean that formed by means of an eruption style similar to that of Surtsey (Iceland) was monitored and observed via high resolution satellite imaging for over ~30 months since its time of formation in early 2015. This island, unofficially named Hunga Tonga Hunga Ha'apai (HTHH), was not expected to persist as land for more than a few months, but our observations have documented its lifetime for 30 months. Using topography derived from high resolution satellite images, the above-sea-level volume of the island was measured over time, leading to a "volumetric" erosion rate that was compared with other oceanic islands. The HTHH island is disappearing five times (or more) faster than Surtsey, but much slower than typical models predict, allowing detailed measurement of its erosional history at new spatial scales. Regional submarine topography (bathymetry) shows that shallow-water topology may be an important factor in explaining the unexpected lifetime of this new island, together with the likelihood of internal strengthening by hydrothermal mineralization. The stages of erosion of the HTHH island may have implications for similar landforms discovered on Mars and their formation and evolution.« less

Networks of lexical borrowing and lateral gene transfer in language and genome evolution

PubMed Central

List, Johann-Mattis; Nelson-Sathi, Shijulal; Geisler, Hans; Martin, William

2014-01-01

Like biological species, languages change over time. As noted by Darwin, there are many parallels between language evolution and biological evolution. Insights into these parallels have also undergone change in the past 150 years. Just like genes, words change over time, and language evolution can be likened to genome evolution accordingly, but what kind of evolution? There are fundamental differences between eukaryotic and prokaryotic evolution. In the former, natural variation entails the gradual accumulation of minor mutations in alleles. In the latter, lateral gene transfer is an integral mechanism of natural variation. The study of language evolution using biological methods has attracted much interest of late, most approaches focusing on language tree construction. These approaches may underestimate the important role that borrowing plays in language evolution. Network approaches that were originally designed to study lateral gene transfer may provide more realistic insights into the complexities of language evolution. PMID:24375688

Electron-cyclotron wave propagation, absorption and current drive in the presence of neoclassical tearing modes

NASA Astrophysics Data System (ADS)

Isliker, Heinz; Chatziantonaki, Ioanna; Tsironis, Christos; Vlahos, Loukas

2012-09-01

We analyze the propagation of electron-cyclotron waves, their absorption and current drive when neoclassical tearing modes (NTMs), in the form of magnetic islands, are present in a tokamak plasma. So far, the analysis of the wave propagation and power deposition in the presence of NTMs has been performed mainly in the frame of an axisymmetric magnetic field, ignoring any effects from the island topology. Our analysis starts from an axisymmetric magnetic equilibrium, which is perturbed such as to exhibit magnetic islands. In this geometry, we compute the wave evolution with a ray-tracing code, focusing on the effect of the island topology on the efficiency of the absorption and current drive. To increase the precision in the calculation of the power deposition, the standard analytical flux-surface labeling for the island region has been adjusted from the usual cylindrical to toroidal geometry. The propagation up to the O-point is found to be little affected by the island topology, whereas the power absorbed and the driven current are significantly enhanced, because the resonant particles are bound to the small volumes in between the flux surfaces of the island. The consequences of these effects on the NTM evolution are investigated in terms of the modified Rutherford equation.

Genetic drift and rapid evolution of viviparity in insular fire salamanders (Salamandra salamandra)

PubMed Central

Velo-Antón, G; Zamudio, K R; Cordero-Rivera, A

2012-01-01

Continental islands offer an excellent opportunity to investigate adaptive processes and to time microevolutionary changes that precede macroevolutionary events. We performed a population genetic study of the fire salamander (Salamandra salamandra), a species that displays unique intraspecific diversity of reproductive strategies, to address the microevolutionary processes leading to phenotypic and genetic differentiation of island, coastal and interior populations. We used eight microsatellite markers to estimate genetic diversity, population structure and demographic parameters in viviparous insular populations and ovoviviparous coastal and interior populations. Our results show considerable genetic differentiation (FST range: 0.06–0.27), and no clear signs of gene flow among populations, except between the large and admixed interior populations. We find no support for island colonization by rafting or intentional/accidental anthropogenic introductions, indicating that rising sea levels were responsible for isolation of the island populations approximately 9000 years ago. Our study provides evidence of rapid genetic differentiation between island and coastal populations, and rapid evolution of viviparity driven by climatic selective pressures on island populations, geographic isolation with genetic drift, or a combination of these factors. Studies of these viviparous island populations in early stages of divergence help us better understand the microevolutionary processes involved in rapid phenotypic shifts. PMID:22086081

Genetic drift and rapid evolution of viviparity in insular fire salamanders (Salamandra salamandra).

PubMed

Velo-Antón, G; Zamudio, K R; Cordero-Rivera, A

2012-04-01

Continental islands offer an excellent opportunity to investigate adaptive processes and to time microevolutionary changes that precede macroevolutionary events. We performed a population genetic study of the fire salamander (Salamandra salamandra), a species that displays unique intraspecific diversity of reproductive strategies, to address the microevolutionary processes leading to phenotypic and genetic differentiation of island, coastal and interior populations. We used eight microsatellite markers to estimate genetic diversity, population structure and demographic parameters in viviparous insular populations and ovoviviparous coastal and interior populations. Our results show considerable genetic differentiation (F(ST) range: 0.06-0.27), and no clear signs of gene flow among populations, except between the large and admixed interior populations. We find no support for island colonization by rafting or intentional/accidental anthropogenic introductions, indicating that rising sea levels were responsible for isolation of the island populations approximately 9000 years ago. Our study provides evidence of rapid genetic differentiation between island and coastal populations, and rapid evolution of viviparity driven by climatic selective pressures on island populations, geographic isolation with genetic drift, or a combination of these factors. Studies of these viviparous island populations in early stages of divergence help us better understand the microevolutionary processes involved in rapid phenotypic shifts.

Modeling the Response of Human Altered Natural Barrier Island Dynamics Along Assateague Island National Seashore to Climate Change

NASA Astrophysics Data System (ADS)

Carroll, A.; McNamara, D.; Schupp, C.

2009-12-01

Assateague Island National Seashore comprises a long barrier island located off the coasts of Maryland and Virginia. Geological evidence suggests that over recent centuries Assateague Island has steadily transgressed up the continental shelf in response to rising sea level. More recently, the natural barrier island dynamics governing Assateague’s evolution have been altered by human activity in three ways: the construction of a jetty and the subsequent interruption of alongshore sediment transport on the north end of Assateague and both the ongoing and abandoned maintenance of a continuous dune system along portions of Assateague with the concomitant modification to overwash dynamics. It is unclear how these varied human alterations to the natural barrier island dynamics will influence the response of Assateague to climate change induced shifts in forcing such as increased rates of sea level rise and changing storm patterns. We use LIDAR detected morphological data of Assateague Island as initial conditions in an alongshore extended model for barrier island dynamics including beach erosion, island overwash and inlet cutting during storms, and beach accretion, tidal delta growth and dune and vegetation growth between storms to explore the response of the various human altered segments of Assateague Island to forcing changes. Traditional models exploring barrier island evolution contain only cross-shore dynamics therefore lacking important alongshore-spatial dynamics in aeolian and surf zone sediment transport. Results show that including alongshore dynamics alter the steady state of Assateague relative to simulations that only include cross-shore dynamics. Results will also be presented exploring the potential for regime shifts in steady state behavior under various scenarios for the rate of sea level rise and storm climate and varying management strategies.

Observation and modeling of the evolution of an ephemeral storm-induced inlet: Pea Island Breach, North Carolina, USA

NASA Astrophysics Data System (ADS)

Velasquez Montoya, Liliana; Sciaudone, Elizabeth J.; Mitasova, Helena; Overton, Margery F.

2018-03-01

The Outer Banks of North Carolina is a wave-dominated barrier island system that has experienced the opening and closure of numerous inlets in the last four centuries. The most recent of those inlets formed after the breaching of Pea Island during Hurricane Irene in 2011. The Pea Island Breach experienced a rapid evolution including episodic curvature of the main channel, rotation of the ebb channel, shoaling, widening by Hurricane Sandy in 2012, and finally closing before the summer of 2013. Studying the life cycle of Pea Island Breach contributes to understanding the behavior of ephemeral inlets in breaching-prone regions. This topic has gained relevance due to rising sea levels, a phenomenon that increases the chances of ephemeral inlet formation during extreme events. This study explores the spatiotemporal effects of tides, waves, and storms on flow velocities and morphology of the breach by means of remotely sensed data, geospatial metrics, and a numerical model. The combined use of observations and results from modeling experiments allowed building a conceptual model to explain the life cycle of Pea Island Breach. Wave seasonality dominated the morphological evolution of the inlet by controlling the magnitude and direction of the longshore current that continuously built transient spits at both sides of the breach. Sensitivity analysis to external forcings indicates that ocean waves can modify water levels and velocities in the back barrier. Sound-side storm surge regulates overall growth rate, duration, and decay of peak water levels entering the inlet during extreme events.

Coastal bathymetry and backscatter data collected in 2012 from the Chandeleur Islands, Louisiana

USGS Publications Warehouse

DeWitt, Nancy T.; Bernier, Julie C.; Pfeiffer, William R.; Miselis, Jennifer L.; Reynolds, B.J.; Wiese, Dana S.; Kelso, Kyle W.

2014-01-01

As part of the Barrier Island Evolution Research Project, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off the northern Chandeleur Islands, Louisiana, in July and August of 2012. The objective of the study is to better understand barrier island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual timescales (1-5 years). Collecting geophysical data will allow us to identify relationships between the geologic history of the island and its present day morphology and sediment distribution. This mapping effort was the second in a series of three planned surveys in this area. High resolution geophysical data collected in each of 3 consecutive years along this rapidly changing barrier island system will provide a unique time-series dataset that will significantly further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over short time scales (1-5 years). This Data Series report includes the geophysical data that were collected during two cruises (USGS Field Activity Numbers 12BIM03 and 12BIM04) aboard the RV Survey Cat and the RV Twin Vee along the northern portion of the Chandeleur Islands, Breton National Wildlife Refuge, Louisiana. Data were acquired with the following equipment: a Systems Engineering and Assessment, Ltd., SWATHplus interferometric sonar (468 kilohertz (kHz)), an EdgeTech 424 (4-24 kHz) chirp sub-bottom profiling system, and a Knudsen 320BP (210 kHz) echosounder. This report serves as an archive of processed interferometric swath and single-beam bathymetry data. Geographic information system data products include an interpolated digital elevation model, an acoustic backscatter mosaic, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata. NOTE: These data are scientific in nature and are not to be used for navigation.

Many-to-one form-to-function mapping weakens parallel morphological evolution.

PubMed

Thompson, Cole J; Ahmed, Newaz I; Veen, Thor; Peichel, Catherine L; Hendry, Andrew P; Bolnick, Daniel I; Stuart, Yoel E

2017-11-01

Evolutionary ecologists aim to explain and predict evolutionary change under different selective regimes. Theory suggests that such evolutionary prediction should be more difficult for biomechanical systems in which different trait combinations generate the same functional output: "many-to-one mapping." Many-to-one mapping of phenotype to function enables multiple morphological solutions to meet the same adaptive challenges. Therefore, many-to-one mapping should undermine parallel morphological evolution, and hence evolutionary predictability, even when selection pressures are shared among populations. Studying 16 replicate pairs of lake- and stream-adapted threespine stickleback (Gasterosteus aculeatus), we quantified three parts of the teleost feeding apparatus and used biomechanical models to calculate their expected functional outputs. The three feeding structures differed in their form-to-function relationship from one-to-one (lower jaw lever ratio) to increasingly many-to-one (buccal suction index, opercular 4-bar linkage). We tested for (1) weaker linear correlations between phenotype and calculated function, and (2) less parallel evolution across lake-stream pairs, in the many-to-one systems relative to the one-to-one system. We confirm both predictions, thus supporting the theoretical expectation that increasing many-to-one mapping undermines parallel evolution. Therefore, sole consideration of morphological variation within and among populations might not serve as a proxy for functional variation when multiple adaptive trait combinations exist. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Evolution method and ``differential hierarchy'' of colored knot polynomials

NASA Astrophysics Data System (ADS)

Mironov, A.; Morozov, A.; Morozov, And.

2013-10-01

We consider braids with repeating patterns inside arbitrary knots which provides a multi-parametric family of knots, depending on the "evolution" parameter, which controls the number of repetitions. The dependence of knot (super)polynomials on such evolution parameters is very easy to find. We apply this evolution method to study of the families of knots and links which include the cases with just two parallel and anti-parallel strands in the braid, like the ordinary twist and 2-strand torus knots/links and counter-oriented 2-strand links. When the answers were available before, they are immediately reproduced, and an essentially new example is added of the "double braid", which is a combination of parallel and anti-parallel 2-strand braids. This study helps us to reveal with the full clarity and partly investigate a mysterious hierarchical structure of the colored HOMFLY polynomials, at least, in (anti)symmetric representations, which extends the original observation for the figure-eight knot to many (presumably all) knots. We demonstrate that this structure is typically respected by the t-deformation to the superpolynomials.

Parallel evolution of sexual isolation in sticklebacks.

PubMed

Boughman, Janette Wenrick; Rundle, Howard D; Schluter, Dolph

2005-02-01

Mechanisms of speciation are not well understood, despite decades of study. Recent work has focused on how natural and sexual selection cause sexual isolation. Here, we investigate the roles of divergent natural and sexual selection in the evolution of sexual isolation between sympatric species of threespine sticklebacks. We test the importance of morphological and behavioral traits in conferring sexual isolation and examine to what extent these traits have diverged in parallel between multiple, independently evolved species pairs. We use the patterns of evolution in ecological and mating traits to infer the likely nature of selection on sexual isolation. Strong parallel evolution implicates ecologically based divergent natural and/or sexual selection, whereas arbitrary directionality implicates nonecological sexual selection or drift. In multiple pairs we find that sexual isolation arises in the same way: assortative mating on body size and asymmetric isolation due to male nuptial color. Body size and color have diverged in a strongly parallel manner, similar to ecological traits. The data implicate ecologically based divergent natural and sexual selection as engines of speciation in this group.

On the stability of the solutions of the general problem of three bodies

NASA Technical Reports Server (NTRS)

Standish, E. M., Jr.

1976-01-01

The extent through which the initial conditions of a given three-body system may be varied without completely changing the qualitative nature of the subsequent system evolution is investigated. It is assumed that the three masses are equal, all initial velocities are zero, the first two bodies initially lie on the x-axis, and the position of the third body is confined to a specific region of space. Analysis of the system evolution for different initial positions of the third body shows that there is a whole area or 'island' in the x-y plane throughout which the initial position of the third body may be moved in a continuous fashion to produce an evolution which also changes in a continuous manner. A Monte Carlo approach is adopted to determine the full extent of this island in the general problem. It is concluded that the stability of a full solution may be directly related to the size of its island in phase space.

Major General George Crook’s Use of Counterinsurgency Compound Warfare during the Great Sioux War of 1876-77

DTIC Science & Technology

2008-06-13

to secure the western flank along a parallel ridge to support the scouts and infantrymen who were charging against the Sioux. Two more battalions...that he was a native of the Sandwich Islands and was the son of a Mormon missionary and an island noblewoman. More likely, he was the son 60 of

Unique parallel radiations of high-mountainous species of the genus Sedum (Crassulaceae) on the continental island of Taiwan.

PubMed

Ito, Takuro; Yu, Chih-Chieh; Nakamura, Koh; Chung, Kuo-Fang; Yang, Qin-Er; Fu, Cheng-Xin; Qi, Zhe-Chen; Kokubugata, Goro

2017-08-01

We explored the temporal and spatial diversification of the plant genus Sedum L. (Crassulaceae) in Taiwan based on molecular analysis of nrITS and cpDNA sequences from East Asian Sedum members. Our phylogenetic and ancestral area reconstruction analysis showed that Taiwanese Sedum comprised two lineages that independently migrated from Japan and Eastern China. Furthermore, the genetic distances among species in these two clades were smaller than those of other East Asian Sedum clades, and the Taiwanese members of each clade occupy extremely varied habitats with similar niches in high-mountain regions. These data indicate that species diversification occurred in parallel in the two Taiwanese Sedum lineages, and that these parallel radiations could have occurred within the small continental island of Taiwan. Moreover, the estimated time of divergence for Taiwanese Sedum indicates that the two radiations might have been correlated to the formation of mountains in Taiwan during the early Pleistocene. We suggest that these parallel radiations may be attributable to the geographical dynamics of Taiwan and specific biological features of Sedum that allow them to adapt to new ecological niches. Copyright © 2017 Elsevier Inc. All rights reserved.

Interaction of a magnetic island chain in a tokamak plasma with a resonant magnetic perturbation of rapidly oscillating phase

NASA Astrophysics Data System (ADS)

Fitzpatrick, Richard

2017-12-01

An investigation is made into the interaction of a magnetic island chain, embedded in a tokamak plasma, with an externally generated magnetic perturbation of the same helicity whose helical phase is rapidly oscillating. The analysis is similar in form to the classic analysis used by Kapitza [Sov. Phys. JETP 21, 588 (1951)] to examine the angular motion of a rigid pendulum whose pivot point undergoes rapid vertical oscillations. The phase oscillations are found to modify the existing terms, and also to give rise to new terms, in the equations governing the secular evolution of the island chain's radial width and helical phase. An examination of the properties of the new secular evolution equation reveals that it is possible to phase-lock an island chain to an external magnetic perturbation with an oscillating helical phase in a stabilizing phase relation provided that the amplitude, ɛ, of the phase oscillations (in radians) is such that |J0(ɛ )|≪1 , and the mean angular frequency of the perturbation closely matches the natural angular frequency of the island chain.

Dykes and structures of the NE rift of Tenerife, Canary Islands: a record of stabilisation and destabilisation of ocean island rift zones

NASA Astrophysics Data System (ADS)

Delcamp, A.; Troll, V. R.; van Wyk de Vries, B.; Carracedo, J. C.; Petronis, M. S.; Pérez-Torrado, F. J.; Deegan, F. M.

2012-07-01

Many oceanic island rift zones are associated with lateral sector collapses, and several models have been proposed to explain this link. The North-East Rift Zone (NERZ) of Tenerife Island, Spain offers an opportunity to explore this relationship, as three successive collapses are located on both sides of the rift. We have carried out a systematic and detailed mapping campaign on the rift zone, including analysis of about 400 dykes. We recorded dyke morphology, thickness, composition, internal textural features and orientation to provide a catalogue of the characteristics of rift zone dykes. Dykes were intruded along the rift, but also radiate from several nodes along the rift and form en échelon sets along the walls of collapse scars. A striking characteristic of the dykes along the collapse scars is that they dip away from rift or embayment axes and are oblique to the collapse walls. This dyke pattern is consistent with the lateral spreading of the sectors long before the collapse events. The slump sides would create the necessary strike-slip movement to promote en échelon dyke patterns. The spreading flank would probably involve a basal decollement. Lateral flank spreading could have been generated by the intense intrusive activity along the rift but sectorial spreading in turn focused intrusive activity and allowed the development of deep intra-volcanic intrusive complexes. With continued magma supply, spreading caused temporary stabilisation of the rift by reducing slopes and relaxing stress. However, as magmatic intrusion persisted, a critical point was reached, beyond which further intrusion led to large-scale flank failure and sector collapse. During the early stages of growth, the rift could have been influenced by regional stress/strain fields and by pre-existing oceanic structures, but its later and mature development probably depended largely on the local volcanic and magmatic stress/strain fields that are effectively controlled by the rift zone growth, the intrusive complex development, the flank creep, the speed of flank deformation and the associated changes in topography. Using different approaches, a similar rift evolution has been proposed in volcanic oceanic islands elsewhere, showing that this model likely reflects a general and widespread process. This study, however, shows that the idea that dykes orient simply parallel to the rift or to the collapse scar walls is too simple; instead, a dynamic interplay between external factors (e.g. collapse, erosion) and internal forces (e.g. intrusions) is envisaged. This model thus provides a geological framework to understand the evolution of the NERZ and may help to predict developments in similar oceanic volcanoes elsewhere.

Convergent and parallel evolution in life habit of the scallops (Bivalvia: Pectinidae)

PubMed Central

2011-01-01

Background We employed a phylogenetic framework to identify patterns of life habit evolution in the marine bivalve family Pectinidae. Specifically, we examined the number of independent origins of each life habit and distinguished between convergent and parallel trajectories of life habit evolution using ancestral state estimation. We also investigated whether ancestral character states influence the frequency or type of evolutionary trajectories. Results We determined that temporary attachment to substrata by byssal threads is the most likely ancestral condition for the Pectinidae, with subsequent transitions to the five remaining habit types. Nearly all transitions between life habit classes were repeated in our phylogeny and the majority of these transitions were the result of parallel evolution from byssate ancestors. Convergent evolution also occurred within the Pectinidae and produced two additional gliding clades and two recessing lineages. Furthermore, our analysis indicates that byssal attaching gave rise to significantly more of the transitions than any other life habit and that the cementing and nestling classes are only represented as evolutionary outcomes in our phylogeny, never as progenitor states. Conclusions Collectively, our results illustrate that both convergence and parallelism generated repeated life habit states in the scallops. Bias in the types of habit transitions observed may indicate constraints due to physical or ontogenetic limitations of particular phenotypes. PMID:21672233

Parallel independent evolution of pathogenicity within the genus Yersinia

PubMed Central

Reuter, Sandra; Connor, Thomas R.; Barquist, Lars; Walker, Danielle; Feltwell, Theresa; Harris, Simon R.; Fookes, Maria; Hall, Miquette E.; Petty, Nicola K.; Fuchs, Thilo M.; Corander, Jukka; Dufour, Muriel; Ringwood, Tamara; Savin, Cyril; Bouchier, Christiane; Martin, Liliane; Miettinen, Minna; Shubin, Mikhail; Riehm, Julia M.; Laukkanen-Ninios, Riikka; Sihvonen, Leila M.; Siitonen, Anja; Skurnik, Mikael; Falcão, Juliana Pfrimer; Fukushima, Hiroshi; Scholz, Holger C.; Prentice, Michael B.; Wren, Brendan W.; Parkhill, Julian; Carniel, Elisabeth; Achtman, Mark; McNally, Alan; Thomson, Nicholas R.

2014-01-01

The genus Yersinia has been used as a model system to study pathogen evolution. Using whole-genome sequencing of all Yersinia species, we delineate the gene complement of the whole genus and define patterns of virulence evolution. Multiple distinct ecological specializations appear to have split pathogenic strains from environmental, nonpathogenic lineages. This split demonstrates that contrary to hypotheses that all pathogenic Yersinia species share a recent common pathogenic ancestor, they have evolved independently but followed parallel evolutionary paths in acquiring the same virulence determinants as well as becoming progressively more limited metabolically. Shared virulence determinants are limited to the virulence plasmid pYV and the attachment invasion locus ail. These acquisitions, together with genomic variations in metabolic pathways, have resulted in the parallel emergence of related pathogens displaying an increasingly specialized lifestyle with a spectrum of virulence potential, an emerging theme in the evolution of other important human pathogens. PMID:24753568

Interpreting plasmonic response of epitaxial Ag/Si(100) island ensembles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kong, Dexin; Jiang, Liying; Drucker, Jeff

Associating features in the experimentally measured optical response of epitaxial Ag islands grown on Si(100) with the localized surface plasmon resonances (LSPRs) hosted by the Ag islands is challenging due to the variation of the Si dielectric function over the energy range under consideration. However, it is possible to conclusively identify features in the experimental spectra with LSPR modes oscillating both parallel and perpendicular to the epitaxial interface by simulating the optical response. The Abeles matrix method is used to describe the composite layered system and the Ag islands are modeled using the thin island film model developed by Bedeauxmore » and Vlieger. By incorporating island morphology parameters determined by quantitative analysis of electron micrographs, the simulation faithfully reproduces the main features of the experimental spectra. Individually zeroing the dipoles associated with the LSPR modes enables conclusive identification of their contribution to the optical response of the composite system.« less

Dendrochronology of strain-relaxed islands.

PubMed

Merdzhanova, T; Kiravittaya, S; Rastelli, A; Stoffel, M; Denker, U; Schmidt, O G

2006-06-09

We report on the observation and study of tree-ring structures below dislocated SiGe islands (superdomes) grown on Si(001) substrates. Analogous to the study of tree rings (dendrochronology), these footprints enable us to gain unambiguous information on the growth and evolution of superdomes and their neighboring islands. The temperature dependence of the critical volume for dislocation introduction is measured and related to the composition of the islands. We show clearly that island coalescence is the dominant pathway towards dislocation nucleation at low temperatures, while at higher temperatures anomalous coarsening is effective and leads to the formation of a depletion region around superdomes.

Preliminary results constraining the kinematics of subduction and exhumation processes on Skopelos island, Northern Sporades (Aegean Domain)

NASA Astrophysics Data System (ADS)

Porkolab, Kristof; Willingshofer, Ernst; Sokoutis, Dimitrios; Creton, Iverna

2017-04-01

Extension in the Aegean region is a process driven by slab rollback since 45 Ma (e.g. Brun and Sokoutis, 2007; Brun et al. 2016). These and other studies dominantly focused on the northern Aegean/Rhodope or the Cycladic tectonic systems, yielding abundant kinematic, structural, petrologic and geochronological data to constrain their geodynamic evolution. This contrasts with the region of the Northern Sporades, which have not yet been thoroughly studied in the light of subduction-exhumation processes. In particular, a detailed kinematic analysis, the focus of this study, is missing that allows for establishing the relation between the deformation structures on the island, and the large-scale tectonic events in the Aegean domain. The Northern Sporades consist of three major (area ≥ 50km2) islands (Skiathos, Skopelos, and Alonnisos) and a number of smaller islands. As the first phase of exploring the structural evolution of the Northern Sporades, this work reports the results of field work performed on the island of Skopelos, and aims to provide a preliminary model for the deformation history of the island. Skopelos consists from bottom to top of three structural units, which are separated by thrust contacts (Jacobshagen and Wallbrecher, 1984; Matarangas, 1992; Jacobshagen and Matarangas, 2004): the Pelagonian, the Eohellenic, and the Palouki unit. The age of the formations constituting these units ranges from Paleozoic to Paleogene, and all formations have been metamorphosed under lower greenschist or possibly also blueschist facies conditions (Mposkos and Liati, 1991) and experienced polyphase deformation. Based on our field kinematic and structural analysis we suggest the following deformation sequence on Skopelos island: D1 is characterized by tight to isoclinal folding (F1) and the formation of a penetrative foliation (S1), which is the axial plane cleavage to the F1 folds. S1 planes carry a NE-SW trending stretching lineation, along which top-SW shear has been inferred. The second phase of deformation (D2) is defined by top-NE to E shear using the already existing S1 foliation planes in many cases. D2 folding (F2) entails the formation of sheath folds with their axes being sub-parallel to the dominantly NE-SW trending stretching lineation in zones of high strain, upright folds with NE-SW trending axes as well as recumbent folds that affected the already tilted penetrative foliation. The D3 phase is semi-brittle to brittle and is defined by outcrop-to regional-scale fault (and fault-related fold) systems, which have shaped the geometry and elevation of islands and basins of the region until present days. We interpret D1 to reflect prograde metamorphism and top-SW deformation during subduction of the Pelagonian continental block. In contrast, D2 records progressive and distributed top-NE to E extensional deformation and provides the main mechanism for exhuming the previously buried rocks. This phase of deformation was probably triggered by the southward retreat of the Hellenic trench. The emplacement of the Eohellenic and the Palouki units by thrusting (D3) is post-metamorphic and in our view related to the dextral displacement along the fault that borders the North Aegean Trough.

Final Technical Report - SciDAC Cooperative Agreement: Center for Wave Interactions with Magnetohydrodynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schnack, Dalton D.

Final technical report for research performed by Dr. Thomas G. Jenkins in collaboration with Professor Dalton D. Schnack on SciDAC Cooperative Agreement: Center for Wave Interactions with Magnetohydrodyanics, DE-FC02-06ER54899, for the period of 8/15/06 - 8/14/11. This report centers on the Slow MHD physics campaign work performed by Dr. Jenkins while at UW-Madison and then at Tech-X Corporation. To make progress on the problem of RF induced currents affect magnetic island evolution in toroidal plasmas, a set of research approaches are outlined. Three approaches can be addressed in parallel. These are: (1) Analytically prescribed additional term in Ohm's law tomore » model the effect of localized ECCD current drive; (2) Introduce an additional evolution equation for the Ohm's law source term. Establish a RF source 'box' where information from the RF code couples to the fluid evolution; and (3) Carry out a more rigorous analytic calculation treating the additional RF terms in a closure problem. These approaches rely on the necessity of reinvigorating the computation modeling efforts of resistive and neoclassical tearing modes with present day versions of the numerical tools. For the RF community, the relevant action item is - RF ray tracing codes need to be modified so that general three-dimensional spatial information can be obtained. Further, interface efforts between the two codes require work as well as an assessment as to the numerical stability properties of the procedures to be used.« less

Parallel evolution of auditory genes for echolocation in bats and toothed whales.

PubMed

Shen, Yong-Yi; Liang, Lu; Li, Gui-Sheng; Murphy, Robert W; Zhang, Ya-Ping

2012-06-01

The ability of bats and toothed whales to echolocate is a remarkable case of convergent evolution. Previous genetic studies have documented parallel evolution of nucleotide sequences in Prestin and KCNQ4, both of which are associated with voltage motility during the cochlear amplification of signals. Echolocation involves complex mechanisms. The most important factors include cochlear amplification, nerve transmission, and signal re-coding. Herein, we screen three genes that play different roles in this auditory system. Cadherin 23 (Cdh23) and its ligand, protocadherin 15 (Pcdh15), are essential for bundling motility in the sensory hair. Otoferlin (Otof) responds to nerve signal transmission in the auditory inner hair cell. Signals of parallel evolution occur in all three genes in the three groups of echolocators--two groups of bats (Yangochiroptera and Rhinolophoidea) plus the dolphin. Significant signals of positive selection also occur in Cdh23 in the Rhinolophoidea and dolphin, and Pcdh15 in Yangochiroptera. In addition, adult echolocating bats have higher levels of Otof expression in the auditory cortex than do their embryos and non-echolocation bats. Cdh23 and Pcdh15 encode the upper and lower parts of tip-links, and both genes show signals of convergent evolution and positive selection in echolocators, implying that they may co-evolve to optimize cochlear amplification. Convergent evolution and expression patterns of Otof suggest the potential role of nerve and brain in echolocation. Our synthesis of gene sequence and gene expression analyses reveals that positive selection, parallel evolution, and perhaps co-evolution and gene expression affect multiple hearing genes that play different roles in audition, including voltage and bundle motility in cochlear amplification, nerve transmission, and brain function.

Stratigraphy and morphology of the barrier platform of Breton Island, Louisiana: deltaic, marine and human influences

USGS Publications Warehouse

Flocks, James G.; Kindinger, Jack G.; Miselis, Jennifer L.; Locker, Stanley D.

2015-01-01

Breton Island, located at the southern end of the Chandeleur Islands, Louisiana, is part of the Breton National Wildlife Refuge (NWR). Breton NWR is recognized as an important bird habitat and is host to one of Louisiana's largest historical brown pelican nesting colonies. Loss of island area through relative sea-level rise, storm impact, and impeded and diminishing sediment supply is reducing the available habitat, and restoration is necessary if the island is to remain emergent. Physical investigation of the Breton Island platform has provided new insight into the geologic framework. The data reveal a complex system that is undergoing both long-term and short-term change. Results of the study help to resolve uncertainties in island evolution and will assist in effective restoration of the island.

Island biogeography: Taking the long view of nature's laboratories.

PubMed

Whittaker, Robert J; Fernández-Palacios, José María; Matthews, Thomas J; Borregaard, Michael K; Triantis, Kostas A

2017-09-01

Islands provide classic model biological systems. We review how growing appreciation of geoenvironmental dynamics of marine islands has led to advances in island biogeographic theory accommodating both evolutionary and ecological phenomena. Recognition of distinct island geodynamics permits general models to be developed and modified to account for patterns of diversity, diversification, lineage development, and trait evolution within and across island archipelagos. Emergent patterns of diversity include predictable variation in island species-area relationships, progression rule colonization from older to younger land masses, and syndromes including loss of dispersability and secondary woodiness in herbaceous plant lineages. Further developments in Earth system science, molecular biology, and trait data for islands hold continued promise for unlocking many of the unresolved questions in evolutionary biology and biogeography. Copyright © 2017, American Association for the Advancement of Science.

Studies of the Initial Stages of Epitaxial Growth of Germanium on Silicon

NASA Astrophysics Data System (ADS)

Krishnamurthy, Mohan

The epitaxial growth of ultra-thin films (< 1nm thick) of Ge on Si(100) has been studied in -situ in an Ultra High Vacuum-Scanning Transmission Electron Microscope. Ge was deposited on clean Si(100) using molecular beam techniques to study two types of growth processes, Molecular Beam Epitaxy (MBE) and Solid Phase MBE. Ge grows in the Stranski-Krastanov growth mode, forming islands after initial layer growth. This islanding transition has been studied with high spatial resolution biassed Secondary Electron Imaging and Auger spectroscopy and imaging. Ex -situ Transmission Electron Microscopy (TEM) and Reflection High Energy Diffraction (RHEED) were also used to characterize the transition. The islanding process and its subsequent evolution was monitored with the help of island size distributions, sensitive to islands above 2nm in size. The studies indicate that Ge forms islands in equilibrium with a 3 monolayer (ML) thick intermediate layer. These islands may initially grow coherently strained (dislocation free) with radii usually below 10nm under the conditions. The strain in these islands reduces the adatom sticking coefficient and strongly influences the microstructural evolution. The intermediate layer may grow metastably under certain conditions to as much as 7 ML before collapsing to its equilibrium form. The influence of three types of adatom sinks--strained islands, dislocated islands and contaminant particles have been studied. The contaminant particles are the strongest sinks, followed by dislocated islands and strained islands. Stepped (vicinal) surfaces (1^circ and 5 ^circ toward {110 }) had no significant influence possibly due to the steps being weak adatom sinks. The coarsening of Ge islands does not follow the Ostwald ripening model at the early stages and is influenced by the supersaturation in the intermediate layer and the strain in the coherent islands. A novel mechanism has been observed, where the larger (dislocated) islands grow at the expense of the unstable intermediate layer while the distribution of smaller (strained) islands is constant. This is possibly due to the lower sticking coefficient at the strained islands.

Middle to late Holocene coastal evolution along the south coast of Upolu Island, Samoa

USGS Publications Warehouse

Goodwin, I.D.; Grossman, E.E.

2003-01-01

Stratigraphic surveys and sedimentological analyses of coastal sediments and reef cores along the south coast of Upolu Island, Samoa, reveal that during the middle Holocene this coast was characterised by barrier spits, open lagoons, and estuaries. These estuarine systems matured during the late Holocene, with progressive sedimentation and inlet closure, leading to the dominance of mangrove swamps in the past 1000 years. Contemporaneous with the transition of open estuaries to mangrove swamps was the aggradation and progradation of coastal plains. The coastal progradation since 700-1000 years BP is best explained by increased sediment availability and reduced incident wave energy at the shore resulting from the shallowing and subsequent cessation of reef crest accretion following the mid-Holocene sea-level highstand ca. ???4500 yr BP. A small relative sea-level (RSL) lowering since 700-1000 years may have contributed to the positive sediment budget. This study highlights the need for island-wide coastal surveys to assess the relative roles of RSL, sediment budgets, and hydrodynamics on coastal evolution and stability. Differences in coastal evolution around Upolu Island may also be influenced by differential tectonic movements associated with late Holocene volcanism, coseismicity, and/ or submarine landslides. ?? 2003 Elsevier B.V. All rights reserved.

Reconstructing the Vulcano Island evolution from 3D modeling of magnetic signatures

NASA Astrophysics Data System (ADS)

Napoli, Rosalba; Currenti, Gilda

2016-06-01

High-resolution ground and marine magnetic data are exploited for a detailed definition of a 3D model of the Vulcano Island volcanic complex. The resulting 3D magnetic imaging, obtained by 3-D inverse modeling technique, has delivered useful constraints both to reconstruct the Vulcano Island evolution and to be used as input data for volcanic hazard assessment models. Our results constrained the depth and geometry of the main geo-structural features revealing more subsurface volcanic structures than exposed ones and allowing to elucidate the relationships between them. The recognition of two different magnetization sectors, approximatively coincident with the structural depressions of Piano caldera, in the southern half of the island, and La Fossa caldera at the north, suggests a complex structural and volcanic evolution. Magnetic highs identified across the southern half of the island reflect the main crystallized feeding systems, intrusions and buried vents, whose NNW-SSE preferential alignment highlights the role of the NNW-SSE Tindari-Letojanni regional system from the initial activity of the submarine edifice, to the more recent activity of the Vulcano complex. The low magnetization area, in the middle part of the island may result from hydrothermally altered rocks. Their presence not only in the central part of the volcano edifice but also in other peripheral areas, is a sign of a more diffuse historical hydrothermal activity than in present days. Moreover, the high magnetization heterogeneity within the upper flanks of La Fossa cone edifice is an imprint of a composite distribution of unaltered and altered rocks with different mechanical properties, which poses in this area a high risk level for failure processes especially during volcanic or hydrothermal crisis.

Island of stability for consistent deformations of Einstein's gravity.

PubMed

Berkhahn, Felix; Dietrich, Dennis D; Hofmann, Stefan; Kühnel, Florian; Moyassari, Parvin

2012-03-30

We construct deformations of general relativity that are consistent and phenomenologically viable, since they respect, in particular, cosmological backgrounds. These deformations have unique symmetries in accordance with their Minkowski cousins (Fierz-Pauli theory for massive gravitons) and incorporate a background curvature induced self-stabilizing mechanism. Self-stabilization is essential in order to guarantee hyperbolic evolution in and unitarity of the covariantized theory, as well as the deformation's uniqueness. We show that the deformation's parameter space contains islands of absolute stability that are persistent through the entire cosmic evolution.

Electron Thermal Transport due to Magnetic Diffusion in the MST RFP

NASA Astrophysics Data System (ADS)

Reusch, J. A.; Anderson, J. K.; den Hartog, D. J.; Forest, C. B.; Kasten, C. P.; Schnack, D. D.; Stephens, H. D.

2011-10-01

Comparison of measurements made in the MST RFP to the results from extensive nonlinear resistive MHD simulations has provided two key observations. First, trapped particles reduce electron thermal diffusion; inclusion of this effect is required for quantitative agreement of simulation to measurement. Second, the structure and evolution of long-wavelength temperature fluctuations measured in MST shows remarkable qualitative similarity to fluctuations appearing in a finite-pressure simulation. These simulations were run at parameters matching those of 400 kA discharges in MST (S ~ 4 ×106). In a zero β simulation, the measured χe is compared to the thermal diffusion due to parallel losses along diffusing magnetic field lines, χst =v∥Dmag . Agreement is only found if the reduction in χst due to trapped particles is taken into account. In a second simulation, the pressure field was evolved self consistently assuming Ohmic heating and anisotropic thermal conduction. Fluctuations in the simulated temperature are very similar in character and time evolution to temperature fluctuations measured in MST. This includes m = 1 , n = 6 fluctuations that flatten the temperature profile as well as m = 1 , n = 5 fluctuations that generate hot island structures near the core shortly after sawtooth crashes. This work supported by the US DOE and NSF.

Ecology, Diversity, and Evolution of Magnetotactic Bacteria

PubMed Central

Bazylinski, Dennis A.

2013-01-01

SUMMARY Magnetotactic bacteria (MTB) are widespread, motile, diverse prokaryotes that biomineralize a unique organelle called the magnetosome. Magnetosomes consist of a nano-sized crystal of a magnetic iron mineral that is enveloped by a lipid bilayer membrane. In cells of almost all MTB, magnetosomes are organized as a well-ordered chain. The magnetosome chain causes the cell to behave like a motile, miniature compass needle where the cell aligns and swims parallel to magnetic field lines. MTB are found in almost all types of aquatic environments, where they can account for an important part of the bacterial biomass. The genes responsible for magnetosome biomineralization are organized as clusters in the genomes of MTB, in some as a magnetosome genomic island. The functions of a number of magnetosome genes and their associated proteins in magnetosome synthesis and construction of the magnetosome chain have now been elucidated. The origin of magnetotaxis appears to be monophyletic; that is, it developed in a common ancestor to all MTB, although horizontal gene transfer of magnetosome genes also appears to play a role in their distribution. The purpose of this review, based on recent progress in this field, is focused on the diversity and the ecology of the MTB and also the evolution and transfer of the molecular determinants involved in magnetosome formation. PMID:24006473

Multiple aquatic invasions by an endemic, terrestrial Hawaiian moth radiation

PubMed Central

Rubinoff, Daniel; Schmitz, Patrick

2010-01-01

Insects are the most diverse form of life on the planet, dominating both terrestrial and freshwater ecosystems, yet no species has a life stage able to breath, feed, and develop either continually submerged or without access to water. Such truly amphibious insects are unrecorded. In mountain streams across the Hawaiian Islands, some caterpillars in the endemic moth genus Hyposmocoma are truly amphibious. These larvae can breathe and feed indefinitely both above and below the water's surface and can mature completely submerged or dry. Remarkably, a molecular phylogeny based on 2,243 bp from both nuclear (elongation factor 1α and carbomoylphosphate synthase) and mitochondrial (cytochrome oxidase I) genes representing 216 individuals and 89 species of Hyposmocoma reveals that this amphibious lifestyle is an example of parallel evolution and has arisen from strictly terrestrial clades at least three separate times in the genus starting more than 6 million years ago, before the current high islands existed. No other terrestrial genus of animals has sponsored so many independent aquatic invasions, and no other insects are able to remain active indefinitely above and below water. Why and how Hyposmocoma, an overwhelmingly terrestrial group, repeatedly evolved unprecedented aquatic species is unclear, although there are many other evolutionary anomalies across the Hawaiian archipelago. The uniqueness of the community assemblages of Hawaii's isolated biota is likely critical in generating such evolutionary novelty because this amphibious ecology is unknown anywhere else. PMID:20308549

Phage-inducible islands in the Gram-positive cocci.

PubMed

Martínez-Rubio, Roser; Quiles-Puchalt, Nuria; Martí, Miguel; Humphrey, Suzanne; Ram, Geeta; Smyth, Davida; Chen, John; Novick, Richard P; Penadés, José R

2017-04-01

The SaPIs are a cohesive subfamily of extremely common phage-inducible chromosomal islands (PICIs) that reside quiescently at specific att sites in the staphylococcal chromosome and are induced by helper phages to excise and replicate. They are usually packaged in small capsids composed of phage virion proteins, giving rise to very high transfer frequencies, which they enhance by interfering with helper phage reproduction. As the SaPIs represent a highly successful biological strategy, with many natural Staphylococcus aureus strains containing two or more, we assumed that similar elements would be widespread in the Gram-positive cocci. On the basis of resemblance to the paradigmatic SaPI genome, we have readily identified large cohesive families of similar elements in the lactococci and pneumococci/streptococci plus a few such elements in Enterococcus faecalis. Based on extensive ortholog analyses, we found that the PICI elements in the four different genera all represent distinct but parallel lineages, suggesting that they represent convergent evolution towards a highly successful lifestyle. We have characterized in depth the enterococcal element, EfCIV583, and have shown that it very closely resembles the SaPIs in functionality as well as in genome organization, setting the stage for expansion of the study of elements of this type. In summary, our findings greatly broaden the PICI family to include elements from at least three genera of cocci.

Renewed classification within Goniurosaurus (Squamata: Eublepharidae) uncovers the dual roles of a continental island (Hainan) in species evolution.

PubMed

Liang, Bin; Zhou, Run-Bang; Liu, Yan-Lin; Chen, Bei; Grismer, L Lee; Wang, Ning

2018-06-12

Continental islands are often dynamic in regard to the origin and evolution of their biota. Although colonizations from mainland Southeast Asia to Hainan Island have been reported, the role of Hainan Island as a source for continental biota has not been considered. Goniurosaurus is a genus comprised of nocturnal ground geckos. We reexamined the evolutionary history of Goniurosaurus using both molecular phylogenetics and morphological comparisons. All phylogenetic trees recovered G. zhoui as sister to G. hainanensis + G. lichtenfelderi, which together are the sister lineage of G. bawanglingensis. The recovery of this "Hainan clade" contradicts previous classifications that placed G. bawanglingensis within the G. luii group. Moreover, ancestral trait reconstruction revealed that body band number might have decreased two or three times independently within Goniurosaurus from four to three. The divergence between the continental G. luii group and the Hainan clade was estimated at ∼34.7 Mya (CI = 22.3-48.6), possibly correlating with the vicariance event between Hainan Island and the mainland. G. lichtenfelderi diverged from G. hainanensis very recently, which might be associated with a historical dispersal event from Hainan Island to Vietnam during glacial periods. Our study improves the understanding of Goniurosaurus systematics and reveals the important role of Hainan Island in bidirectional colonizations. Copyright © 2018 Elsevier Inc. All rights reserved.

Hurricane Harvey rapid response: observations of infragravity wave dynamics and morphological change during inundation of a barrier island cut

NASA Astrophysics Data System (ADS)

Anarde, K.; Figlus, J.; Dellapenna, T. M.; Bedient, P. B.

2017-12-01

Prior to landfall of Hurricane Harvey on August 25, 2017, instrumentation was deployed on the seaward and landward sides of a barrier island on the central Texas Gulf Coast to collect in-situ hydrodynamic measurements during storm impact. High-resolution devices capable of withstanding extreme conditions included inexpensive pressure transducers and tilt current meters mounted within and atop (respectively) shallow monitoring wells. In order to link measurements of storm hydrodynamics with the morphological evolution of the barrier, pre- and post-storm digital elevation models were generated using a combination of unmanned aerial imagery, LiDAR, and real-time kinematic GPS. Push-cores were collected and analyzed for grain size and sedimentary structure to relate hydrodynamic observations with the local character of storm-generated deposits. Observations show that at Hog Island, located approximately 160 miles northeast of Harvey's landfall location, storm surge inundated an inactive storm channel. Infragravity waves (0.003 - 0.05 Hz) dominated the water motion onshore of the berm crest over a 24-hour period proximate to storm landfall. Over this time, approximately 50 cm of sediment accreted vertically atop the instrument located in the backshore. Storm deposits at this location contained sub-parallel alternating laminae of quartz and heavy mineral-enriched sand. While onshore progression of infragravity waves into the back-barrier was observed over several hours prior to storm landfall, storm deposits in the back-barrier lack the characteristic laminae preserved in the backshore. These field measurements will ultimately be used to constrain and validate numerical modeling schemes that explore morphodynamic conditions of barriers in response to extreme storms (e.g., XBeach, CSHORE). This study provides a unique data set linking extreme storm hydrodynamics with geomorphic changes during a relatively low surge, but highly dissipative wave event.

Application of ground penetrating radar for identification of washover deposits and other stratigraphic features: Assateague Island, MD

USGS Publications Warehouse

Zaremba, Nicholas; Smith, Christopher G.; Bernier, Julie C.; Forde, Arnell S.

2016-01-01

A combination of ground penetrating radar (GPR) data, core data, and aerial photographs were analyzed to better understand the evolution of two portions of Assateague Island, Maryland. The focus of the study was to investigate the applicability of using GPR data to image washover deposits in the stratigraphic record. High amplitude reflections observed in two shore-perpendicular GPR profiles were correlated to shallow (<1 m) lithologic contacts observed in sediment cores. At these contacts, deposits consisting primarily of quartz sand overlie sediments with organic matter that include degraded plant root or stem material. The underlying organic matter likely represents the vegetated portion of the barrier island that was buried by washover fans deposited during hurricanes Irene (2011) and Sandy (2012), as indicated in high-resolution aerial photographs. The GPR data were able to delineate the washover deposits from the underlying stratigraphic unit; however, the radar data did not resolve finer structures necessary to definitively differentiate washover facies from other sand-rich deposits (e.g., flood-tide deltas and dunes). Other GPR profiles contain reflections that likely correlate to geomorphic features like tidal channels and vegetated zones observed in historical aerial imagery. Burial of these features by overwash fluxes were observed in the aerial imagery and thus the resulting radar sequence is largely interpreted as washover deposits. Deeper, channel-like features that have been infilled were also observed in shore-parallel profiles and these features coincide with scour channels observed in the 1966 aerial photography. Additional sedimentological data are required to determine what role overwash played in the in-filling of these features.

Caves, Carbonates and Climate: Karst Landscape Development through Environmental Forcing, Little Cayman Island

NASA Astrophysics Data System (ADS)

Hsia, S.; Ouellette, G., Jr.; Manfrino, C.

2016-12-01

The Cayman Islands are situated in the west-central Caribbean Sea, between Cuba and the Yucatan Peninsula. Little Cayman Island (LCI) is relatively underdeveloped and understudied in comparison to its sister islands, Grand Cayman and Cayman Brac, and hosts less than 200 permanent residents over a 30 square kilometer area. However, like its sister islands, LCI is a small carbonate platform derived from reef building during the Oligocene, Miocene, and Quaternary. The shared geologic history of the Cayman Islands along with minimal human disturbance makes LCI an ideal site to study an island karst landscape. Conduction of field surveys, stratigraphic and petrologic comparisons between primary lithologic formations, and compilation of a geospatial inventory of karst features and lithology of LCI using GIS revealed novel insights into landscape evolution on LCI. In addition to surface karst surveys, several caves on the island were mapped. Cave morphologies suggest that evolution of LCI karst features have been driven by both hydroclimate, as well as salt and freshwater mixing, modulated by sea level fluctuations. These findings are mirrored in the lithology of partially dolomitized Miocene carbonates, which contain paleo-karst fill features and reveal hydroclimate influence, as well as enhanced resistance to dissolution in the present day, ostensibly from submersion in Mg-rich sea waters prior to the Quaternary. These findings shed light on the complex relationship of climate, geology, and karst landscape development on this particular carbonate island. This information is critical in anticipating structural and hydrogeological integrity on LCI under future climate change scenarios and serves as an example of the interplay linking climate and geologic processes to karst landscape development on small carbonate islands.

On the Electrons Dynamics during Rapid Island Coalescence in Asymmetric Magnetic Reconnection: Case With and With No Guide Field

NASA Astrophysics Data System (ADS)

Cazzola, E.; Innocenti, M. E.; Markidis, S.; Goldman, M. V.; Newman, D. L.; Lapenta, G.

2015-12-01

We present a set of fully kinetic 2.5D simulations of electron dynamics during rapid magnetic islands coalescence in asymmetric conditions. Simulations are performed using the massively parallel fully kinetic implicit moment method code iPIC3D (Markidis et al. 2010). The domain is a double periodic box with two current sheets initially representing two different reconnection conditions with the same asymmetric ratio. In the upper sheet the conventional hyperbolic continuous functions for magnetic field and density are initialised across the layer (e.g. Pritchett 2008). In the lower layer the same asymmetric conditions are used the presence of an extremely steep gradient describing a pure tangential discontinuity.Cases with and without guide field are compared. While the upper layer shows the typical reconnection evolution of an asymmetric configuration, the lower layer very soon develops not-uniformly distributed multiple reconnection points which rapidly evolve in a series of magnetic islands. Quick islands coalescence follows. Even though the electrons dynamics during island merging has been studied in both symmetric and asymmetric conditions (e.g. Pritchett 2007, 2008b, Drake et al. 2006, Oka et al. 2010, Huang et al. 2014), these simulations show new interesting features such as the presence of three distinct regions, here named X, M and D, with very different properties. Regions X and M manifest typical signatures of ongoing reconnection, distinguishable thanks to the direct comparison with the outcomes of the upper layer. In particular, M-type regions are different because reconnection occurs between two merging islands in a vertical fashion with respect to the direction of the current sheets initially set. In contrast, regions D present a quite diverse features, not showing the typical signatures of a occurring reconnection. The present work is supported by the NASA MMS Grant NNX08AO84G. Additional support for the KULeuven team is provided by the European Commission DEEP-ER project, by the Onderzoekfonds KU Leuven (Research Fund KU Leuven) and by the Interuniversity Attraction Poles Programme of the Belgian Science Policy Office (IAP P7/08 CHARM). The simulations were conducted on the computational resources provided by the PRACE Tier-0 2013091928 (SuperMUC supercomputer).

Multiple secondary islands formation in nonlinear evolution of double tearing mode simulations

NASA Astrophysics Data System (ADS)

Guo, W.; Ma, J.; Yu, Z.

2017-03-01

A new numerical code solving the conservative perturbed resistive magnetohydrodynamic (MHD) model is developed. Numerical tests of the ideal Kelvin-Helmholtz instability and the resistive double tearing mode (DTM) show its capability in solving linear and nonlinear MHD instabilities. The nonlinear DTM evolution in 2D geometry is numerically investigated with low guiding field B z 0 , short half-distance y 0 between the equilibrium current sheets, and small resistivity η. The interaction of islands on the two initial current sheets may generate an unstable flow driven current sheet with a high length-to-thickness aspect ratio (α), and multiple secondary islands can form. In general, the length-to-thickness aspect ratio α and the number of secondary islands increase with decreasing guide field B z 0 , decreasing half-distance y 0 , and increasing Lundquist number of the flow driven current sheet S L although the dependence may be non-monotonic. The reconnection rate dependence on S L , B z 0 , and y 0 is also investigated.

Barrier island morphodynamic classification based on lidar metrics for north Assateague Island, Maryland

USGS Publications Warehouse

Brock, John C.; Krabill, William; Sallenger, Asbury H.

2004-01-01

In order to reap the potential of airborne lidar surveys to provide geological information useful in understanding coastal sedimentary processes acting on various time scales, a new set of analysis methods are needed. This paper presents a multi-temporal lidar analysis of north Assateague Island, Maryland, and demonstrates the calculation of lidar metrics that condense barrier island morphology and morphological change into attributed linear features that may be used to analyze trends in coastal evolution. The new methods proposed in this paper are also of significant practical value, because lidar metric analysis reduces large volumes of point elevations into linear features attributed with essential morphological variables that are ideally suited for inclusion in Geographic Information Systems. A morphodynamic classification of north Assategue Island for a recent 10 month time period that is based on the recognition of simple patterns described by lidar change metrics is presented. Such morphodynamic classification reveals the relative magnitude and the fine scale alongshore variation in the importance of coastal changes over the study area during a defined time period. More generally, through the presentation of this morphodynamic classification of north Assateague Island, the value of lidar metrics in both examining large lidar data sets for coherent trends and in building hypotheses regarding processes driving barrier evolution is demonstrated

Transport properties of interacting magnetic islands in tokamak plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gianakon, T.A.; Callen, J.D.; Hegna, C.C.

1993-10-01

This paper explores the equilibrium and transient transport properties of a mixed magnetic topology model for tokamak equilibria. The magnetic topology is composed of a discrete set of mostly non-overlapping magnetic islands centered on the low-order rational surfaces. Transport across the island regions is fast due to parallel transport along the stochastic magnetic field lines about the separatrix of each island. Transport between island regions is assumed to be slow due to a low residual cross-field transport. In equilibrium, such a model leads to: a nonlinear dependence of the heat flux on the pressure gradient; a power balance diffusion coefficientmore » which increases from core to edge; and profile resiliency. Transiently, such a model also exhibits a heat pulse diffusion coefficient larger than the power balance diffusion coefficient.« less

Ca-Pri a Cellular Automata Phenomenological Research Investigation: Simulation Results

NASA Astrophysics Data System (ADS)

Iannone, G.; Troisi, A.

2013-05-01

Following the introduction of a phenomenological cellular automata (CA) model capable to reproduce city growth and urban sprawl, we develop a toy model simulation considering a realistic framework. The main characteristic of our approach is an evolution algorithm based on inhabitants preferences. The control of grown cells is obtained by means of suitable functions which depend on the initial condition of the simulation. New born urban settlements are achieved by means of a logistic evolution of the urban pattern while urban sprawl is controlled by means of the population evolution function. In order to compare model results with a realistic urban framework we have considered, as the area of study, the island of Capri (Italy) in the Mediterranean Sea. Two different phases of the urban evolution on the island have been taken into account: a new born initial growth as induced by geographic suitability and the simulation of urban spread after 1943 induced by the population evolution after this date.

Investigation of island formation due to RMPs in DIII-D plasmas with the SIESTA resistive MHD equilibrium code

NASA Astrophysics Data System (ADS)

Hirshman, S. P.; Shafer, M. W.; Seal, S. K.; Canik, J. M.

2016-04-01

> The SIESTA magnetohydrodynamic (MHD) equilibrium code has been used to compute a sequence of ideally stable equilibria resulting from numerical variation of the helical resonant magnetic perturbation (RMP) applied to an axisymmetric DIII-D plasma equilibrium. Increasing the perturbation strength at the dominant , resonant surface leads to lower MHD energies and increases in the equilibrium island widths at the (and sidebands) surfaces, in agreement with theoretical expectations. Island overlap at large perturbation strengths leads to stochastic magnetic fields which correlate well with the experimentally inferred field structure. The magnitude and spatial phase (around the dominant rational surfaces) of the resonant (shielding) component of the parallel current are shown to change qualitatively with the magnetic island topology.

Time Evolution of the Basse Terre Island (Guadeloupe, French West Indies) Effusive Volcanism from New K-Ar Cassignol-Gillot Ages.

NASA Astrophysics Data System (ADS)

Samper, A.; Quidelleur, X.; Mollex, D.; Komorowski, J. C.; Boudon, G.

2004-12-01

Radiometric dating and geochemistry of effusive volcanics have been combined with geomorphological observations in order to provide a general evolution model of the volcanic island of Basse Terre, Guadeloupe (French West Indies). More than forty new Cassignol-Gillot K-Ar ages distributed within the entire island, together with the twenty ages (Blanc, 1983; Carlut et al., 2000) previously obtained with the same technique, makes the Guadeloupe Island the best place to study the evolution of volcanic processes within the Lesser Antilles Arc. Dating was performed on the carefully separated groundmass in order to avoid K loss due to weathering and excess argon carried by mafic minerals. Ages obtained are relatively younger than previously thought on Basse Terre and range from a few ka to 2.79+-0.04 Ma. When available, the paleomagnetic polarity of the dated flows agree with the GPTS and a very good coherence of ages is observed for each massif. Our results demonstrate the general north to south migration of volcanism through time. It correlates with the main volcanic stages previously identified. The 2.75 Ma Basal Complex, the 1.81+-0.03 _ 1.15+-0.02 Ma Septentrional Chain, the 1.02+-0.02 Ma _ 0.606+-0.02 Ma Axial Chain, the 442+-6 _ 207+-28 ka Mateliane _ Sans Toucher Complex and the < 200 ka Complex of La Grande Decouverte, which outlines a relative continuity in the Basse Terre magmatism. Lavas are mainly basaltic andesites and andesites although a few basalt and dacite have also been dated. All of them are characterized by low MgO values (< 6 %), tholeiitic to calc-alkaline REE chondrite-normalized patterns and are of both low K and medium K affinity. Lavas display geochemical characteristics similar to that of the central islands of the Lesser Antilles arc. Within Basse Terre, geochemical characteristics are relatively constant through time, indicating no major change of volcanic processes during the whole subaerial activity. Finally the detailed chronological framework now available provides new constraints for estimating rates of edification and destruction at the island scale and, more generally, to help better understand the evolution of the still active Guadeloupe island Soufriere volcano.

Tephro- and chemo-stratigraphy of the Vulcanello Peninsula (Vulcano, Aeolian Islands)

NASA Astrophysics Data System (ADS)

Rosi, M.; Fusillo, R.; di Traglia, F.; Pistolesi, M.; Todman, A.; Menzies, M. A.

2009-12-01

New stratigraphic studies of the Vulcanello Peninsula have been used to better define the small-scale evolution of this young (1000 AD and 325±100 BP) volcanic center and to re-investigate the last 1000 years of volcanic history for the Island of Vulcano (Aeolian Islands, Southern Italy). Vulcanello Peninsula is the northern-most part of the Island of Vulcano. It comprises a shoshonitic lava platform and a volcanic edifice made up of three overlying cones, which are shoshonitic to trachytic in composition. Volcanic activity in this area was coeval with the recent eruptions of the La Fossa Cone, the present-day active center of the island. Our goal is to constrain the recent volcanic development of this mafic volcano and to focus on the historic eruptive activity of the two other recent or active centres in the southern Aeolian Islands, Mt. Pilato (Island of Lipari) and La Fossa Cone. In order to do so, we reconstructed the stratigraphical setting of the proximal deposits of the three Vulcanello cones, through the investigation of 25 outcrops. We analyzed the stratigraphy of the tephra blankets deposited on the lava platform, studying 10 trenches. Our intention is to integrate morphological, textural and chemical data in order to correlate these deposits with the Vulcanello, La Fossa Cone or Mt Pilato. LA-MC-ICPMS (RHUL) analysis of juvenile clasts is underway in order to investigate the evolution of the Vulcanello juvenile clasts. In addition 14C dating is planned on selected organic matter from the volcanostratigraphic sections. Our preliminary data for the Vulcanello proximal deposits suggest that each of the three cones experienced several eruptions, with a wide spectrum of eruptive styles and a diversity of chemistry. The oldest cone (Vulcanello I) is characterised by four different eruptions separated by minor unconformities or reworking material indicative of little or not time breaks in the eruptive cycle. The eruptions shift from Violent Strombolian to Hawaiian in style, testifying to a reduction in fragmentation and dispersal. The second cone (Vulcanello II), contains volcanic deposits from Strombolian eruptions only. The third cone (Vulcanello III), displays a complex evolution with an initial effusive episode of a trachytic lava flow, followed by phreatic explosions, evident as altered fine ash layers. These deposits are interbedded with scoriaceous fall deposits, attesting the occurrence of some mild explosive activity during this eruptive phase. This detailed study of the effusive and explosive products from Vulcanello reveals rapid evolution of Vulcanello during the initial phases (1000 AD to 1200 AD) with voluminous mafic eruptions, both effusive and explosive. A progressive reduction in emitted volume is apparent. The presence of abundant explosive deposits related to phreatic explosions during the Vulcanello III phase, is related to the presence of water, a reduction in magma volume and the presence of intense hydrothermal activity in the latter stage of the evolution of Vulcanello evolution until 1878. This may indicate the presence of a stable shallow thermal anomaly.

Regressive and transgressive barrier islands on the North-Central Gulf Coast — Contrasts in evolution, sediment delivery, and island vulnerability

NASA Astrophysics Data System (ADS)

Otvos, Ervin G.; Carter, Gregory A.

2013-09-01

Basic differences between non-deltaic regressive and deltaic transgressive barrier islands reflect major contrasts in geological settings and sediment sources. Two island groups on the N. Gulf of Mexico provide unique perspectives of genetic and geomorphic contrasts applicable in a worldwide context. The near-extinction of the deltaic transgressive Chandeleur barriers and reduction of the sturdier prograded Mississippi-Alabama (MS-AL) chain are related to differences in sediment sources, storm, and anthropogenic impact. 160 years of documentary evidence points to contrasting geological settings, development history, sediment sources, and island morphology as responsible for different island erodibility and life spans. The non-deltaic chain received larger volumes of coarser, less erodible medium sand from the NE Gulf coast. Onshore sand flux from reworked delta deposits received from the retreating delta shoreface initiated the fragile, thin, and isolated transgressive Chandeleur islands. Fine-grained sand from unconsolidated muds of abandoned Mississippi-St. Bernard delta lobes maintained two distinct transgressive barrier island categories. In the absence of quantitative data on cross-shore transport, discrepancies between estimated littoral drift volumes and sand reserves for nourishment remain unexplained. Medium-sandy MS-AL barriers have resisted storm events far better than delta barriers. However, even the former chain did undergo 26 to 53% area reduction since 1848. Anthropogenic intervention stymied island growth. Emerging intertidal berm-basins formed on sandy shoal platforms in storm-eliminated sectors have contributed to partial island recovery. Delta attrition by wave erosion, tectonic, and compactional subsidence had accelerated delta lobe and barrier island decay. Intensive storm erosion culminating in and following Hurricane Katrina came close to eradicate the highly vulnerable Chandeleur barrier chain. Lacking adequate nourishment, after devastating cyclones only small islands reemerge and persist temporarily from the shoal belt. A four-stage barrier evolution model, globally applicable to transgressive deltaic barriers, is based on documented changes in late Holocene Mississippi sub-deltas.

Nemo: an evolutionary and population genetics programming framework.

PubMed

Guillaume, Frédéric; Rougemont, Jacques

2006-10-15

Nemo is an individual-based, genetically explicit and stochastic population computer program for the simulation of population genetics and life-history trait evolution in a metapopulation context. It comes as both a C++ programming framework and an executable program file. Its object-oriented programming design gives it the flexibility and extensibility needed to implement a large variety of forward-time evolutionary models. It provides developers with abstract models allowing them to implement their own life-history traits and life-cycle events. Nemo offers a large panel of population models, from the Island model to lattice models with demographic or environmental stochasticity and a variety of already implemented traits (deleterious mutations, neutral markers and more), life-cycle events (mating, dispersal, aging, selection, etc.) and output operators for saving data and statistics. It runs on all major computer platforms including parallel computing environments. The source code, binaries and documentation are available under the GNU General Public License at http://nemo2.sourceforge.net.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia, M.O.; Muenow, D.W.; Kurz, M.D.

New bathymetric and geochemical data indicate that a seamount west of the island of Hawaii, Mahukona, is a Hawaiian shield volcano. Mahukona has weakly alkalic lavas that are geochemically distinct. They have high {sup 3}He/{sup 4}He ratios (12-21 times atmosphere), and high H{sub 2}O and Cl contents, which are indicative of the early state of development of Hawaiian volcanoes. The He and Sr isotopic values for Mahukona lavas are intermediate between those for lavas from Loihi and Manuna Loa volcanoes and may be indicative of a temporal evolution of Hawaiian magmas. Mahukona volcano became extinct at about 500 ka, perhapsmore » before reaching sea level. It fills the previously assumed gap in the parallel chains of volcanoes forming the southern segment of the Hawaiian hotspot chain. The paired sequence of volcanoes was probably caused by the bifurcation of the Hawaiian mantle plume during its ascent, creating two primary areas of melting 30 to 40 km apart that have persisted for at least the past 4 m.y.« less

Stochastic transformation of points in polygons according to the Voronoi tessellation: microstructural description.

PubMed

Di Vito, Alessia; Fanfoni, Massimo; Tomellini, Massimo

2010-12-01

Starting from a stochastic two-dimensional process we studied the transformation of points in disks and squares following a protocol according to which at any step the island size increases proportionally to the corresponding Voronoi tessera. Two interaction mechanisms among islands have been dealt with: coalescence and impingement. We studied the evolution of the island density and of the island size distribution functions, in dependence on island collision mechanisms for both Poissonian and correlated spatial distributions of points. The island size distribution functions have been found to be invariant with the fraction of transformed phase for a given stochastic process. The n(Θ) curve describing the island decay has been found to be independent of the shape (apart from high correlation degrees) and interaction mechanism.

Coastal bathymetry data collected in 2013 from the Chandeleur Islands, Louisiana

USGS Publications Warehouse

DeWitt, Nancy T.; Miselis, Jennifer L.; Fredericks, Jake J.; Bernier, Julie C.; Reynolds, Billy J.; Kelso, Kyle W.; Thompson, David M.; Flocks, James G.; Wiese, Dana S.

2017-01-12

As part of the Barrier Island Evolution Research Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys around the northern Chandeleur Islands, Louisiana, in July and August of 2013. The objective of the study is to better understand barrier-island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual timescales (1‒5 years). Collecting geophysical data will allow us to identify relationships between the geologic history of the island and its present day morphology and sediment distribution. This mapping effort was the third in a series of three planned surveys in this area. High resolution geophysical data collected in each of three consecutive years along this rapidly changing barrier island system will provide a unique time-series dataset that will significantly further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over short time scales (1‒5 years).This data series includes the geophysical data that were collected during two cruises (USGS Field Activity Numbers (FAN) 13BIM02, 13BIM03, and 13BIM04, in July 2013; and FANs 13BIM07 and 13BIM08 in August 2013) aboard the R/V Sallenger, the R/V Jabba Jaw, and the R/V Shark along the northern portion of the Chandeleur Islands, Breton National Wildlife Refuge, Louisiana. Primary data were acquired with the following equipment: (1) a Systems Engineering and Assessment, Ltd., SWATHplus interferometric sonar (468 kilohertz [kHz]), (2) an EdgeTech 424 (4‒24 kHz) chirp sub-bottom profiling system, and (3) two Odom Hydrographic Systems, Incorporated, Echotrach CV100 single beam echosounders.This data series report serves as an archive of processed interferometric swath and single-beam bathymetry data. Geographic information system data products include an interpolated digital elevation model, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.

Galapagos III World Evolution Summit: why evolution matters

PubMed Central

Paz-y-Miño-C, Guillermo; Espinosa, Avelina

2016-01-01

There is no place on Earth like the Galapagos Islands and no better destination to discuss the reality of evolution. Under the theme ‘Why Does Evolution Matter’, the University San Francisco of Quito (USFQ), Ecuador, and its Galapagos Institute for the Arts and Sciences (GAIAS), organized the III World Evolution Summit in San Cristóbal Island. The 200-attendee meeting took place on 1 to 5 June 2013; it included 12 keynote speakers, 20 oral presentations by international scholars, and 31 posters by faculty, postdocs, and graduate and undergraduate students. The Summit encompassed five sessions: evolution and society, pre-cellular evolution and the RNA world, behavior and environment, genome, and microbes and diseases. USFQ and GAIAS launched officially the Lynn Margulis Center for Evolutionary Biology and showcased the Galapagos Science Center, in San Cristóbal, an impressive research facility conceptualized in partnership with the University of North Carolina at Chapel Hill, USA. USFQ and GAIAS excelled at managing the conference with exceptional vision and at highlighting the relevance of Galapagos in the history of modern evolutionary thinking; Charles Darwin’s visit to this volcanic archipelago in 1835 unfolded unprecedented scientific interest in what today is a matchless World Heritage. PMID:26925190

Hurricane impact and recovery shoreline change analysis of the Chandeleur Islands, Louisiana, USA: 1855 to 2005

USGS Publications Warehouse

Fearnley, Sarah M.; Miner, Michael; Brock, John C.

2011-01-01

Results from historical (1855-2005) shoreline change analysis of the Chandeleur Islands, Louisiana, demonstrate that tropical cyclone frequency dominates the long-term evolution of this barrier-island arc. The detailed results of this study were published in December 2009 as part of a special issue of Geo-Marine Letters that documents early results from the Northern Gulf of Mexico (NGOM) Ecosystem Change and Hazard Susceptibility Project.

Morphosedimentary evolution of carbonate sandy beaches at decadal scale : case study in Reunion Island , Indian Ocean

NASA Astrophysics Data System (ADS)

Mahabot, Marie-Myriam; Pennober, Gwenaelle; Suanez, Serge; Troadec, Roland; Delacourt, Christophe

2017-04-01

Global change introduce a lot of uncertainties concerning future trajectory of beaches by directly or indirectly modifying major driving factors. An improved understanding of the past shoreline evolution may help for anticipate future coastline response. However, in tropical environment, studies concerning carbonate beaches dynamics are scarce compared to open sandy beaches. Consequently, coral reef protected beaches morphological adjustment is still poorly understood and long-term evolution rate are poorly quantified in these specific environment. In this context, La Reunion Island, insular department of France located in Indian Ocean, constitute a favoured laboratory. This high volcanic island possesses 25 km of carbonate beaches which experience hydrodynamic forcing specific from tropical environment: cyclonic swell during summer and long period swell during winter. Because of degraded coral reef health and high anthropogenic pressure, 50% of the beaches are in erosion since 1970s. Beach survey has been conducted since 1990s by scientist and are now encompassed as pilot site within a French observatory network which guarantee long-term survey with high resolution observational techniques. Thus, La Reunion Island is one of the rare carbonate beach to be surveyed since 20 years. This study aims to examined and quantify beach response at decadal scale on carbonate sandy beaches of Reunion Island. The study focus on 12 km of beaches from Cap Champagne to the Passe de Trois-Bassins. The analyze of 15 beach profile data originated from historical and DGPS beach topographic data confirm long term trend to erosion. Sediment lost varies between 0.5 and 2 m3.yr-1 since 1998. However longshore current have led to accretion of some part of beach compartment with rate of 0.7 to 1.6 m3.yr-1. Wave climate was examined from in-situ measurement over 15 years and show that extreme waves associated with tropical cyclones and long period swell play a major role in beach dynamics. Swell frequency and intensity are both determinant for beach evolution.

Improving understanding of near-term barrier island evolution through multi-decadal assessment of morphologic change

USGS Publications Warehouse

Lentz, Erika E.; Hapke, Cheryl J.; Stockdon, Hilary F.; Hehre, Rachel E.

2013-01-01

Observed morphodynamic changes over multiple decades were coupled with storm-driven run-up characteristics at Fire Island, New York, to explore the influence of wave processes relative to the impacts of other coastal change drivers on the near-term evolution of the barrier island. Historical topography was generated from digital stereo-photogrammetry and compared with more recent lidar surveys to quantify near-term (decadal) morphodynamic changes to the beach and primary dune system between the years 1969, 1999, and 2009. Notably increased profile volumes were observed along the entirety of the island in 1999, and likely provide the eolian source for the steady dune crest progradation observed over the relatively quiescent decade that followed. Persistent patterns of erosion and accretion over 10-, 30-, and 40-year intervals are attributable to variations in island morphology, human activity, and variations in offshore bathymetry and island orientation that influence the wave energy reaching the coast. Areas of documented long-term historical inlet formation and extensive bayside marsh development show substantial landward translation of the dune–beach profile over the near-term period of this study. Correlations among areas predicted to overwash, observed elevation changes of the dune crestline, and observed instances of overwash in undeveloped segments of the barrier island verify that overwash locations can be accurately predicted in undeveloped segments of coast. In fact, an assessment of 2012 aerial imagery collected after Hurricane Sandy confirms that overwash occurred at the majority of near-term locations persistently predicted to overwash. In addition to the storm wave climate, factors related to variations within the geologic framework which in turn influence island orientation, offshore slope, and sediment supply impact island behavior on near-term timescales.

Morpho-structural evolution of a volcanic island developed inside an active oceanic rift: S. Miguel Island (Terceira Rift, Azores)

NASA Astrophysics Data System (ADS)

Sibrant, A. L. R.; Hildenbrand, A.; Marques, F. O.; Weiss, B.; Boulesteix, T.; Hübscher, C.; Lüdmann, T.; Costa, A. C. G.; Catalão, J. C.

2015-08-01

The evolution of volcanic islands is generally marked by fast construction phases alternating with destruction by a variety of mass-wasting processes. More specifically, volcanic islands located in areas of intense regional deformation can be particularly prone to gravitational destabilisation. The island of S. Miguel (Azores) has developed during the last 1 Myr inside the active Terceira Rift, a major tectonic structure materializing the present boundary between the Eurasian and Nubian lithospheric plates. In this work, we depict the evolution of the island, based on high-resolution DEM data, stratigraphic and structural analyses, high-precision K-Ar dating on separated mineral phases, and offshore data (bathymetry and seismic profiles). The new results indicate that: (1) the oldest volcanic complex (Nordeste), composing the easternmost part of the island, was dominantly active between ca. 850 and 750 ka, and was subsequently affected by a major south-directed flank collapse. (2) Between at least 500 ka and 250 ka, the landslide depression was massively filled by a thick lava succession erupted from volcanic cones and domes distributed along the main E-W collapse scar. (3) Since 250 kyr, the western part of this succession (Furnas area) was affected by multiple vertical collapses; associated plinian eruptions produced large pyroclastic deposits, here dated at ca. 60 ka and less than 25 ka. (4) During the same period, the eastern part of the landslide scar was enlarged by retrogressive erosion, producing the large Povoação valley, which was gradually filled by sediments and young volcanic products. (5) The Fogo volcano, in the middle of S. Miguel, is here dated between ca. 270 and 17 ka, and was affected by, at least, one southwards flank collapse. (6) The Sete Cidades volcano, in the western end of the island, is here dated between ca. 91 and 13 ka, and experienced mutliple caldera collapses; a landslide to the North is also suspected from the presence of a subtle morphologic scar covered by recent lava flows erupted from alignments of basaltic strombolian cones. The predominance of the N150° and N75° trends in the island suggest that the tectonics of the Terceira Rift controlled the location and the distribution of the volcanism, and to some extent the various destruction events.

Genetic and phylogenetic consequences of island biogeography.

PubMed

Johnson, K P; Adler, F R; Cherry, J L

2000-04-01

Island biogeography theory predicts that the number of species on an island should increase with island size and decrease with island distance to the mainland. These predictions are generally well supported in comparative and experimental studies. These ecological, equilibrium predictions arise as a result of colonization and extinction processes. Because colonization and extinction are also important processes in evolution, we develop methods to test evolutionary predictions of island biogeography. We derive a population genetic model of island biogeography that incorporates island colonization, migration of individuals from the mainland, and extinction of island populations. The model provides a means of estimating the rates of migration and extinction from population genetic data. This model predicts that within an island population the distribution of genetic divergences with respect to the mainland source population should be bimodal, with much of the divergence dating to the colonization event. Across islands, this model predicts that populations on large islands should be on average more genetically divergent from mainland source populations than those on small islands. Likewise, populations on distant islands should be more divergent than those on close islands. Published observations of a larger proportion of endemic species on large and distant islands support these predictions.

Phosphoenolpyruvate carboxykinase 1 gene (Pck1) displays parallel evolution between Old World and New World fruit bats.

PubMed

Zhu, Lei; Yin, Qiuyuan; Irwin, David M; Zhang, Shuyi

2015-01-01

Bats are an ideal mammalian group for exploring adaptations to fasting due to their large variety of diets and because fasting is a regular part of their life cycle. Mammals fed on a carbohydrate-rich diet experience a rapid decrease in blood glucose levels during a fast, thus, the development of mechanisms to resist the consequences of regular fasts, experienced on a daily basis, must have been crucial in the evolution of frugivorous bats. Phosphoenolpyruvate carboxykinase 1 (PEPCK1, encoded by the Pck1 gene) is the rate-limiting enzyme in gluconeogenesis and is largely responsible for the maintenance of glucose homeostasis during fasting in fruit-eating bats. To test whether Pck1 has experienced adaptive evolution in frugivorous bats, we obtained Pck1 coding sequence from 20 species of bats, including five Old World fruit bats (OWFBs) (Pteropodidae) and two New World fruit bats (NWFBs) (Phyllostomidae). Our molecular evolutionary analyses of these sequences revealed that Pck1 was under purifying selection in both Old World and New World fruit bats with no evidence of positive selection detected in either ancestral branch leading to fruit bats. Interestingly, however, six specific amino acid substitutions were detected on the ancestral lineage of OWFBs. In addition, we found considerable evidence for parallel evolution, at the amino acid level, between the PEPCK1 sequences of Old World fruit bats and New World fruit bats. Test for parallel evolution showed that four parallel substitutions (Q276R, R503H, I558V and Q593R) were driven by natural selection. Our study provides evidence that Pck1 underwent parallel evolution between Old World and New World fruit bats, two lineages of mammals that feed on a carbohydrate-rich diet and experience regular periods of fasting as part of their life cycle.

Phosphoenolpyruvate Carboxykinase 1 Gene (Pck1) Displays Parallel Evolution between Old World and New World Fruit Bats

PubMed Central

Irwin, David M.; Zhang, Shuyi

2015-01-01

Bats are an ideal mammalian group for exploring adaptations to fasting due to their large variety of diets and because fasting is a regular part of their life cycle. Mammals fed on a carbohydrate-rich diet experience a rapid decrease in blood glucose levels during a fast, thus, the development of mechanisms to resist the consequences of regular fasts, experienced on a daily basis, must have been crucial in the evolution of frugivorous bats. Phosphoenolpyruvate carboxykinase 1 (PEPCK1, encoded by the Pck1 gene) is the rate-limiting enzyme in gluconeogenesis and is largely responsible for the maintenance of glucose homeostasis during fasting in fruit-eating bats. To test whether Pck1 has experienced adaptive evolution in frugivorous bats, we obtained Pck1 coding sequence from 20 species of bats, including five Old World fruit bats (OWFBs) (Pteropodidae) and two New World fruit bats (NWFBs) (Phyllostomidae). Our molecular evolutionary analyses of these sequences revealed that Pck1 was under purifying selection in both Old World and New World fruit bats with no evidence of positive selection detected in either ancestral branch leading to fruit bats. Interestingly, however, six specific amino acid substitutions were detected on the ancestral lineage of OWFBs. In addition, we found considerable evidence for parallel evolution, at the amino acid level, between the PEPCK1 sequences of Old World fruit bats and New World fruit bats. Test for parallel evolution showed that four parallel substitutions (Q276R, R503H, I558V and Q593R) were driven by natural selection. Our study provides evidence that Pck1 underwent parallel evolution between Old World and New World fruit bats, two lineages of mammals that feed on a carbohydrate-rich diet and experience regular periods of fasting as part of their life cycle. PMID:25807515

The glycogen synthase 2 gene (Gys2) displays parallel evolution between Old World and New World fruit bats.

PubMed

Qian, Yamin; Fang, Tao; Shen, Bin; Zhang, Shuyi

2014-01-01

Frugivorous and nectarivorous bats rely largely on hepatic glycogenesis and glycogenolysis for postprandial blood glucose disposal and maintenance of glucose homeostasis during short time starvation, respectively. The glycogen synthase 2 encoded by the Gys2 gene plays a critical role in liver glycogen synthesis. To test whether the Gys2 gene has undergone adaptive evolution in bats with carbohydrate-rich diets in relation to their insect-eating sister taxa, we sequenced the coding region of the Gys2 gene in a number of bat species, including three Old World fruit bats (OWFBs) (Pteropodidae) and two New World fruit bats (NWFBs) (Phyllostomidae). Our results showed that the Gys2 coding sequences are highly conserved across all bat species we examined, and no evidence of positive selection was detected in the ancestral branches leading to OWFBs and NWFBs. Our explicit convergence test showed that posterior probabilities of convergence between several branches of OWFBs, and the NWFBs were markedly higher than that of divergence. Three parallel amino acid substitutions (Q72H, K371Q, and E666D) were detected among branches of OWFBs and NWFBs. Tests for parallel evolution showed that two parallel substitutions (Q72H and E666D) were driven by natural selection, while the K371Q was more likely to be fixed randomly. Thus, our results suggested that the Gys2 gene has undergone parallel evolution on amino acid level between OWFBs and NWFBs in relation to their carbohydrate metabolism.

Studies of Islands on Freely Suspended Bubbles of Smectic Liquid Crystal

NASA Technical Reports Server (NTRS)

Pattanaporkratana, A.; Mavel, B.; Park, C. S.; Maclennan, J. E.; Clark, N. A.

2002-01-01

We have constructed an optical system for observing the internal structure of freely suspended smectic liquid crystal bubbles using a reflected light microscope. Liquid crystal bubbles can have thicker circular regions (islands) which can easily be generated by shrinking the bubble diameter. The diameter of these islands is approximately 10 microns and they are typically up to five times thicker than the surrounding liquid crystal film (500 angstroms). In the Laboratory, the location of the islands is strongly influenced by gravity, which causes the majority of islands to migrate to the bottom half of the bubble. We will describe the size and thickness distributions of islands and their time evolution, and also discuss two-dimensional hydrodynamics and turbulence of smectic bubbles, the shapes of islands and holes affected by bubble vibrations, and the interactions between islands, which we have probed using optical tweezers.

The island rule: made to be broken?

PubMed Central

Meiri, Shai; Cooper, Natalie; Purvis, Andy

2007-01-01

The island rule is a hypothesis whereby small mammals evolve larger size on islands while large insular mammals dwarf. The rule is believed to emanate from small mammals growing larger to control more resources and enhance metabolic efficiency, while large mammals evolve smaller size to reduce resource requirements and increase reproductive output. We show that there is no evidence for the existence of the island rule when phylogenetic comparative methods are applied to a large, high-quality dataset. Rather, there are just a few clade-specific patterns: carnivores; heteromyid rodents; and artiodactyls typically evolve smaller size on islands whereas murid rodents usually grow larger. The island rule is probably an artefact of comparing distantly related groups showing clade-specific responses to insularity. Instead of a rule, size evolution on islands is likely to be governed by the biotic and abiotic characteristics of different islands, the biology of the species in question and contingency. PMID:17986433

Fast hydrological model calibration based on the heterogeneous parallel computing accelerated shuffled complex evolution method

NASA Astrophysics Data System (ADS)

Kan, Guangyuan; He, Xiaoyan; Ding, Liuqian; Li, Jiren; Hong, Yang; Zuo, Depeng; Ren, Minglei; Lei, Tianjie; Liang, Ke

2018-01-01

Hydrological model calibration has been a hot issue for decades. The shuffled complex evolution method developed at the University of Arizona (SCE-UA) has been proved to be an effective and robust optimization approach. However, its computational efficiency deteriorates significantly when the amount of hydrometeorological data increases. In recent years, the rise of heterogeneous parallel computing has brought hope for the acceleration of hydrological model calibration. This study proposed a parallel SCE-UA method and applied it to the calibration of a watershed rainfall-runoff model, the Xinanjiang model. The parallel method was implemented on heterogeneous computing systems using OpenMP and CUDA. Performance testing and sensitivity analysis were carried out to verify its correctness and efficiency. Comparison results indicated that heterogeneous parallel computing-accelerated SCE-UA converged much more quickly than the original serial version and possessed satisfactory accuracy and stability for the task of fast hydrological model calibration.

Open problems of magnetic island control by electron cyclotron current drive

DOE PAGES

Grasso, Daniela; Lazzaro, E.; Borgogno, D.; ...

2016-11-17

This study reviews key aspects of the problem of magnetic islands control by electron cyclotron current drive in fusion devices. On the basis of the ordering of the basic spatial and time scales of the magnetic reconnection physics, we present the established results, highlighting some of the open issues posed by the small-scale structures that typically accompany the nonlinear evolution of the magnetic islands and constrain the effect of the control action.

Insular mammalian fauna dynamics and paleogeography: A lesson from the Western Mediterranean islands

PubMed Central

2018-01-01

Abstract Since the time of Darwin (1859) and Wallace (1869), islands have been regarded by scientists as a prime target for scrutinizing the forces that may influence evolution and diversification and important elements in biogeographic studies. This research aims to scrutinize whether and to what extent the composition and structure of past mammal insular faunas and their changes through time may provide sound clues for inferring the paleogeographical evolution of a region. As a case study, I critically analyzed the dynamics shown by the Plio–Pleistocene mammalian fauna of 3 Western Mediterranean insular districts, the Balearic Islands, Sardinia and Sicily, each characterized by its own peculiar paleobiogeographical evolutionary history. The revision of faunas and the critical analysis of the dispersal ability of the ancestors of island settlers have allowed hypothesizing on the time and mode of island colonization. The results obtained confirm that the early isolation of the Balearic Islands from the mainland led to the establishment of an endemic fauna since the pre‐Messinian Miocene (?Astaracian European Land Mammal Age, MN7/8), and that Sardinia has definitely been isolated since the Pliocene, although dispersal events led to some faunal turnovers during the Pleistocene. In addition, the results suggest for Sicily a complex, still imperfectly disentangled history of alternate phases of complete separation and sporadic, more or less difficult connections with southern Italy. PMID:28688123

Effect of magnetic island geometry on ECRH/ECCD and consequences to the NTM stabilization dynamics

NASA Astrophysics Data System (ADS)

Chatziantonaki, I.; Tsironis, C.; Isliker, H.; Vlahos, L.

2012-09-01

In the majority of codes that model ECCD-based NTM stabilization, the analysis of the EC propagation and absorption is performed in terms of the axisymmetric magnetic field, ignoring effects due to the island topology. In this paper, we analyze the wave propagation, absorption and current drive in the presence of NTMs, as well as the ECCD-driven island growth, focusing on the effect of the island geometry on the wave de-position. A primary evaluation of the consequences of these effects on the NTM evolution is also made in terms of the modified Rutherford equation.

Maps showing bathymetry and modern sediment thickness on the inner continental shelf offshore of Fire Island, New York, pre-Hurricane Sandy

USGS Publications Warehouse

Schwab, William C.; Denny, Jane F.; Baldwin, Wayne E.

2014-01-01

The U.S. Geological Survey mapped approximately 336 square kilometers of the lower shoreface and inner continental shelf offshore of Fire Island, New York, in 2011 by using interferometric sonar and high-resolution chirp seismic-reflection systems. This report presents maps of bathymetry, acoustic backscatter, the coastal plain unconformity, the Holocene marine transgressive surface, and modern sediment thickness. These spatial data support research on the Quaternary evolution of the Fire Island coastal system and provide baseline information for research on coastal processes along southern Long Island.

Global analysis of genes involved in freshwater adaptation in threespine sticklebacks (Gasterosteus aculeatus).

PubMed

DeFaveri, Jacquelin; Shikano, Takahito; Shimada, Yukinori; Goto, Akira; Merilä, Juha

2011-06-01

Examples of parallel evolution of phenotypic traits have been repeatedly demonstrated in threespine sticklebacks (Gasterosteus aculeatus) across their global distribution. Using these as a model, we performed a targeted genome scan--focusing on physiologically important genes potentially related to freshwater adaptation--to identify genetic signatures of parallel physiological evolution on a global scale. To this end, 50 microsatellite loci, including 26 loci within or close to (<6 kb) physiologically important genes, were screened in paired marine and freshwater populations from six locations across the Northern Hemisphere. Signatures of directional selection were detected in 24 loci, including 17 physiologically important genes, in at least one location. Although no loci showed consistent signatures of selection in all divergent population pairs, several outliers were common in multiple locations. In particular, seven physiologically important genes, as well as reference ectodysplasin gene (EDA), showed signatures of selection in three or more locations. Hence, although these results give some evidence for consistent parallel molecular evolution in response to freshwater colonization, they suggest that different evolutionary pathways may underlie physiological adaptation to freshwater habitats within the global distribution of the threespine stickleback. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Fault geometries and deformation mechanisms in the evolution of low-angle normal faults (Kea, Greece)

NASA Astrophysics Data System (ADS)

Iglseder, C.; Grasemann, B.; Schneider, D.; Rice, A. H. N.; Stöckli, D.; Rockenschaub, M.

2009-04-01

The overall tectonic regime in the Cyclades since the Oligocene has been characterized by crustal extension, accommodated by movements on low-angle normal faults (LANFs). On Kea, structural investigations have demonstrated the existence of an island-wide LANF within a large-scale ductile-brittle shear-zone traceable over a distance of 19.5 km parallel to the stretching lineation. The tectonostratigraphy comprises Attic-Cycladic Crystalline lithologies with a shallowly-dipping schist-calcite marble unit overlain by calcitic and dolomitic fault rocks. Notably, the calcitic marbles have been mylonitized, with a mean NNE/NE-SSW/SW trending, pervasive stretching lineation and intense isoclinal folding with fold axes parallel to the stretching lineation. Numerous SC-SCĆ-fabrics and monoclinic clast-geometries show a consistent top-to-SSW shear-sense. Recorded within all lithologies is a consistent WNW/NW-ESE/SE and NNE/NE-SSW/SW striking network of conjugated brittle, brittle-ductile high-angle faults perpendicular and (sub)parallel to the main stretching direction. Field evidence and microstructural investigations indicate high-angle normal faults formed synchronously with movement on LANFs. This interplay of LANFs with high-angle structures, initiated and evolved from brittle-ductile to brittle conditions, indicates initial stages of movement below the calcite brittle-ductile transition but above the dolomite transition. Weakening processes related to syntectonic fluid-rock interactions highlight these observations. In particular, grain-size reduction and strain localisation in fine-grained (ultra)-cataclasites and fine-grained aggregates of phyllosilicate-rich fault-rocks promoted fluid-flow and pressure-solution-accommodated ‘frictional-viscous' creep. These mechanisms show the importance for LANF slip and movement in the progressive development and interaction between contemporaneous active normal faults in the Andersonian-Byerlee frictional mechanics.

47 CFR 73.205 - Zones.

Code of Federal Regulations, 2012 CFR

2012-10-01

... consists of Puerto Rico, the Virgin Islands and that portion of the State of California which is located...; thence east along the 45th parallel to the Atlantic Ocean. When any of the above lines pass through a...

47 CFR 73.205 - Zones.

Code of Federal Regulations, 2011 CFR

2011-10-01

... consists of Puerto Rico, the Virgin Islands and that portion of the State of California which is located...; thence east along the 45th parallel to the Atlantic Ocean. When any of the above lines pass through a...

47 CFR 73.205 - Zones.

Code of Federal Regulations, 2013 CFR

2013-10-01

... consists of Puerto Rico, the Virgin Islands and that portion of the State of California which is located...; thence east along the 45th parallel to the Atlantic Ocean. When any of the above lines pass through a...

47 CFR 73.205 - Zones.

Code of Federal Regulations, 2014 CFR

2014-10-01

... consists of Puerto Rico, the Virgin Islands and that portion of the State of California which is located...; thence east along the 45th parallel to the Atlantic Ocean. When any of the above lines pass through a...

47 CFR 73.205 - Zones.

Code of Federal Regulations, 2010 CFR

2010-10-01

...; thence east along the 45th parallel to the Atlantic Ocean. When any of the above lines pass through a... consists of Puerto Rico, the Virgin Islands and that portion of the State of California which is located...

Archive of digital chirp subbottom profile data collected during USGS cruises 13BIM02 and 13BIM07 offshore of the Chandeleur Islands, Louisiana, 2013

USGS Publications Warehouse

Forde, Arnell S.; Miselis, Jennifer L.; Flocks, James G.; Bernier, Julie C.; Wiese, Dana S.

2014-01-01

On July 5–19 (cruise 13BIM02) and August 22–September 1 (cruise 13BIM07), 2013, the U.S. Geological Survey (USGS) conducted geophysical surveys to investigate the geologic controls on barrier island evolution and medium-term and interannual sediment transport along the oil spill mitigation sand berm constructed at the north end and offshore of the Chandeleur Islands, Louisiana. This investigation is part of a broader USGS study, which seeks to understand barrier island evolution better over medium time scales (months to years). This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Gained–showing a relative increase in signal amplitude–digital images of the seismic profiles are provided. Refer to the Abbreviations page for explanations of acronyms and abbreviations used in this report.

Electrical Stressing Induced Monolayer Vacancy Island Growth on TiSe2

NASA Astrophysics Data System (ADS)

Zheng, Husong; Valtierra, Salvador; Ofori-Opoku, Nana; Chen, Chuanhui; Sun, Lifei; Yuan, Shuaishuai; Jiao, Liying; Bevan, Kirk H.; Tao, Chenggang

2018-03-01

To ensure the practical application of atomically thin transition metal dichalcogenides, it is essential to characterize their structural stability under external stimuli such as electric fields and currents. Using vacancy monolayer islands on TiSe2 surfaces as a model system, for the first time we have observed a shape evolution and growth from triangular to hexagonal driven by scanning tunneling microscopy (STM) electrical stressing. The size of islands shows linear growth with a rate of (3.00 +- 0.05) x 10-3 nm/s, when the STM scanning parameters are held fixed at Vs = 1.0 V and I = 1.8 nA. We further quantified how the growth rate is related to the tunneling current magnitude. Our simulations of monolayer island evolution using phase-field modeling are in good agreement with our experimental observations, and point towards preferential edge atom dissociation under STM scanning driving the observed growth. The results could be potentially important for device applications of ultrathin transition metal dichalcogenides and related 2D materials subject to electrical stressing under device operating conditions.

The evolution of complex type B Allende inclusion - An ion microprobe trace element study

NASA Technical Reports Server (NTRS)

Macpherson, Glenn J.; Crozaz, Ghislaine; Lundberg, Laura L.

1989-01-01

Results are presented of a detailed trace-element and isotopic analyses of the constituent phases in each of the major textural parts (mantle, core, and islands) of a Type B refractory inclusion, the USNM 5241 inclusion from Allende, first described by El Goresy et al. (1985). The REE data on 5241 were found to be largely consistent with a model in which the mantle and the core of 5241 formed sequentially out of a single melt by fractional crystallization. The numerical models of REE evolution in the 5241 melt, especially that of Eu, require that a significant mass of spinel-free island material was assimilated into the evolving melt during the last half of the solidification history of 5241. The trace element results pbtained thus strongly support the interpretation of El Goresy et al. (1985) that the spinel-free islands in the 5241 are trapped xenoliths.

High-resolution geophysical data from the sea floor surrounding the Western Elizabeth Islands, Massachusetts

USGS Publications Warehouse

Pendleton, Elizabeth A.; Twichell, David C.; Foster, David S.; Worley, Charles R.; Irwin, Barry J.; Danforth, William W.

2011-01-01

Geophysical and geospatial data were collected in the nearshore area surrounding the western Elizabeth Islands, Massachusetts on the U.S. Geological Survey research vessel Rafael during September 2010 in a collaborative effort between the U.S. Geological Survey and the Massachusetts, Office of Coastal Zone Management. This report describes the results of the short-term goals of this collaborative effort, which were to map the geology of the inner shelf zone of the western Elizabeth Islands and study the geologic processes that have contributed to its evolution. Data collected during the survey include: Bathymetric and sidescan-sonar data, chirp seismic-reflection data , sound velocity profiles, and navigation data. The long-term goals of this project are to provide high-resolution geophysical data that will support research on the influence of sea-level change and sediment supply on coastal evolution and inventory subtidal marine habitat type and distribution within the coastal zone of Massachusetts.

Influences of misfit strains on liquid phase heteroepitaxial growth

NASA Astrophysics Data System (ADS)

Lu, Yanli; Peng, Yingying; Yu, Genggeng; Chen, Zheng

2017-10-01

Influences of misfit strains with different signs on liquid phase heteroepitaxial growth are studied by binary phase field crystal model. It is amazing to find that double islands are formed because of lateral and vertical separation. The morphological evolution of epitaxial layer depends on signs of misfit strains. The maximum atomic layer thickness of double islands under negative misfit strain is larger than that of under positive misfit strain at the same evolutional time, and size differences between light and dark islands is much smaller under negative misfit strain than that of under positive misfit strain. In addition, concentration field and density field approximately have similar variational law along x direction under the same misfit strain but show opposite variational trend under misfit strains with different signs. Generally, free energy of epitaxial growth systems keeps similar variational trend under misfit strains with different signs.

Seismicity of the Earth 1900-2010 Aleutian arc and vicinity

USGS Publications Warehouse

Benz, Harley M.; Herman, Matthew; Tarr, Arthur C.; Hayes, Gavin P.; Furlong, Kevin P.; Villaseñor, Antonio; Dart, Richard L.; Rhea, Susan

2011-01-01

This map shows details of the Aleutian arc not visible in an earlier publication. The Aleutian arc extends about 3,000 km from the Gulf of Alaska to the Kamchatka Peninsula. It marks the region where the Pacific plate subducts into the mantle beneath the North America plate. This subduction is responsible for the generation of the Aleutian Islands and the deep offshore Aleutian Trench. Relative to a fixed North America plate, the Pacific plate is moving northwest at a rate that increases from about 55 mm per year at the arc's eastern edge to 75 mm per year near its western terminus. In the east, the convergence of the plates is nearly perpendicular to the plate boundary. However, because of the boundary's curvature, as one travels westward along the arc, the subduction becomes more and more oblique to the boundary until the relative plate motion becomes parallel to the arc at the Near Islands near its western edge. Subduction zones such as the Aleutian arc are geologically complex and produce numerous earthquakes from multiple sources. Deformation of the overriding North America plate generates shallow crustal earthquakes, whereas slip at the interface of the plates generates interplate earthquakes that extend from near the base of the trench to depths of 40 to 60 km. At greater depths, Aleutian arc earthquakes occur within the subducting Pacific plate and can reach depths of 300 km. Since 1900, six great earthquakes have occurred along the Aleutian Trench, Alaska Peninsula, and Gulf of Alaska: M8.4 1906 Rat Islands; M8.6 1938 Shumagin Islands; M8.6 1946 Unimak Island; M8.6 1957 Andreanof Islands; M9.2 1964 Prince William Sound; and M8.7 1965 Rat Islands. Several relevant tectonic elements (plate boundaries and active volcanoes) provide a context for the seismicity presented on the main map panel. The plate boundaries are most accurate along the axis of the Aleutian Trench and more diffuse or speculative in extreme northeastern Russia. The active volcanoes parallel the Aleutian Trench from the Gulf of Alaska to the Rat Islands.

Ocean Island Volcanoes—Just How Similar Are They?

NASA Astrophysics Data System (ADS)

Poland, M. P.; Peltier, A.; Bonforte, A.; Puglisi, G.

2016-12-01

Basaltic ocean island volcanoes are exceptional natural laboratories for volcanology. They present a range of eruptive styles, unrest and eruptions are frequent, and good accessibility facilitates detailed observation. The most important factors controlling the style and composition of volcanism at ocean islands are the tectonic setting and magma supply. Hawaíi represents an end member in this respect, located in the middle of an old and rapidly moving plate and with the highest magma supply of any ocean island hot spot. Hawaiian volcanoes are thus large, prone to collapse, and have a compositional evolution that reflects varying degrees of partial melt as they pass over the source hot spot. The Galápagos, in contrast, fall at the other end of the spectrum in most respects—the islands are on a young plate near a spreading center and have comparatively low magma supply. Collapse of Galápagos volcanoes is not common, the edifices are much smaller than their Hawaiian counterparts, and compositional evolution is spatially variable due to thin lithosphere and interaction between hot spot and mid-ocean ridge melts. La Réunion is something of a mix between these extremes, being located in the middle of an old but slow-moving plate and with a low magma supply. The resulting volcanoes have a straightforward compositional evolution, are relatively small in size but long-lived, and have unstable flanks. The broad context of magma supply and tectonic setting provides a useful means of interpreting the characteristics of ocean island volcanism. Gross similarities in volcano morphology (shield structure) and eruptive activity (effusive lava flows) create a perception that these volcanoes are analogs for one another. While it is certainly true that insights from Kīlauea have potential application at Piton de la Fournaise, for example, such lessons should not be applied without a good understanding of the substantial differences between volcanoes.

Geochemistry of mineral waters and associated gases of the Sakhalin Island (Far East of Russia)

NASA Astrophysics Data System (ADS)

Chelnokov, George A.; Bragin, Ivan V.; Kharitonova, Natalia A.

2018-04-01

Isotopic and chemical data on the mineral water, mud volcanoes fluid and associated gases from the biggest Russian island Sakhalin, together with previous stable isotope data (d18O, dD, 13C), allow elucidation of their origin and general evolution. The water fluid circulation is mainly related to marine environment inducing three distinct types: Na-HCO3-Cl alkali carbonate groundwaters, Na-Cl-HCO3 highly evolved saline and Na-Cl mature groundwaters, indicating different evolution. Chemical evolution of groundwater on Sakhalin Island demonstrated cation exchange and salinization as dominant evolutionary pathways. Isotopic composition of groundwaters varies from meteoric to metamorphic waters. These metamorphic waters consist of water hydration from the clay and seawater are traced in fluids of Yuzhno-Sakhalin mud volcano despite modification by mixing with meteoric waters and water-rock interaction processes. Fault systems that define the areas of highly mineralized water circulation appear to play a major role in the CO2 migration to the surface and CH4 generation. The δ13C(CO2) values have pointed that gas phase in high-pCO2 waters mostly consists of mantle-derived CO2. The carbon isotope signature of methane δ13C(CH4) and δD(CH4) indicates its distinct origin which is specified by tectonics. Methane manifestation in the south of the Sakhalin Island is mainly related to thermogenic reservoirs as they are more often dislocate by tectonics, and crossed by active and permeable faults. The sources of biogenous methane in the north of Sakhalin Island is related to younger and shallower reservoirs, and less affected by tectonic processes. The determinations of 222Rn have allowed observing that maximal radon flux is associated with high pCO2 waters.

Large-eddy simulations of mechanical and thermal processes within boundary layer of the Graciosa Island

NASA Astrophysics Data System (ADS)

Sever, G.; Collis, S. M.; Ghate, V. P.

2017-12-01

Three-dimensional numerical experiments are performed to explore the mechanical and thermal impacts of Graciosa Island on the sampling of oceanic airflow and cloud evolution. Ideal and real configurations of flow and terrain are planned using high-resolution, large-eddy resolving (e.g., Δ < 100 meter) simulations. Ideal configurations include model initializations with ideal dry and moist temperature and wind profiles to capture flow features over an island-like topography. Real configurations will use observations from different climatological background states over the Eastern Northern Atlantic, Atmospheric Radiation Measurement (ENA-ARM) site on Graciosa Island. Initial small-domain large-eddy simulations (LES) of dry airflow produce cold-pool formation upstream of an ideal two-kilometer island, with von Kármán like vortices propagation downstream. Although the peak height of Graciosa is less than half kilometer, the Azores island chain has a mountain over 2 km, which may be leading to more complex flow patterns when simulations are extended to a larger domain. Preliminary idealized low-resolution moist simulations indicate that the cloud field is impacted due to the presence of the island. Longer simulations that are performed to capture diurnal evolution of island boundary layer show distinct land/sea breeze formations under quiescent flow conditions. Further numerical experiments are planned to extend moist simulations to include realistic atmospheric profiles and observations of surface fluxes coupled with radiative effects. This work is intended to produce a useful simulation framework coupled with instruments to guide airborne and ground sampling strategies during the ACE-ENA field campaign which is aimed to better characterize marine boundary layer clouds.

Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico).

PubMed

Gaut, Brandon S

2015-07-01

In this commentary, I make inferences about the level of repeatability and constraint in the evolutionary process, based on two sets of replicated experiments. The first experiment is crop domestication, which has been replicated across many different species. I focus on results of whole-genome scans for genes selected during domestication and ask whether genes are, in fact, selected in parallel across different domestication events. If genes are selected in parallel, it implies that the number of genetic solutions to the challenge of domestication is constrained. However, I find no evidence for parallel selection events either between species (maize vs. rice) or within species (two domestication events within beans). These results suggest that there are few constraints on genetic adaptation, but conclusions must be tempered by several complicating factors, particularly the lack of explicit design standards for selection screens. The second experiment involves the evolution of Escherichia coli to thermal stress. Unlike domestication, this highly replicated experiment detected a limited set of genes that appear prone to modification during adaptation to thermal stress. However, the number of potentially beneficial mutations within these genes is large, such that adaptation is constrained at the genic level but much less so at the nucleotide level. Based on these two experiments, I make the general conclusion that evolution is remarkably flexible, despite the presence of epistatic interactions that constrain evolutionary trajectories. I also posit that evolution is so rapid that we should establish a Speciation Prize, to be awarded to the first researcher who demonstrates speciation with a sexual organism in the laboratory. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Modulated heat pulse propagation and partial transport barriers in chaotic magnetic fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Castillo-Negrete, Diego del; Blazevski, Daniel

2016-04-15

Direct numerical simulations of the time dependent parallel heat transport equation modeling heat pulses driven by power modulation in three-dimensional chaotic magnetic fields are presented. The numerical method is based on the Fourier formulation of a Lagrangian-Green's function method that provides an accurate and efficient technique for the solution of the parallel heat transport equation in the presence of harmonic power modulation. The numerical results presented provide conclusive evidence that even in the absence of magnetic flux surfaces, chaotic magnetic field configurations with intermediate levels of stochasticity exhibit transport barriers to modulated heat pulse propagation. In particular, high-order islands andmore » remnants of destroyed flux surfaces (Cantori) act as partial barriers that slow down or even stop the propagation of heat waves at places where the magnetic field connection length exhibits a strong gradient. Results on modulated heat pulse propagation in fully stochastic fields and across magnetic islands are also presented. In qualitative agreement with recent experiments in large helical device and DIII-D, it is shown that the elliptic (O) and hyperbolic (X) points of magnetic islands have a direct impact on the spatio-temporal dependence of the amplitude of modulated heat pulses.« less

Contemporary morphological diversification of passerine birds introduced to the Hawaiian archipelago.

PubMed

Mathys, Blake A; Lockwood, Julie L

2011-08-07

Species that have been introduced to islands experience novel and strong selection pressures after establishment. There is evidence that exotic species diverge from their native source populations; further, a few studies have demonstrated adaptive divergence across multiple exotic populations of a single species. Exotic birds provide a good study system, as they have been introduced to many locations worldwide, and we often know details concerning the propagule origin, time of introduction, and dynamics of establishment and dispersal within the introduced range. These data make them especially conducive to the examination of contemporary evolution. Island faunas have received intense scrutiny, therefore we have expectations concerning the patterns of diversification for exotic species. We examine six passerine bird species that were introduced to the Hawaiian archipelago less than 150 years ago. We find that five of these show morphological divergence among islands from the time since they were established. We demonstrate that some of this divergence cannot be accounted for by genetic drift, and therefore we must consider adaptive evolution to explain it. We also evaluate evolutionary divergence rates and find that these species are diverging at similar rates to those found in published studies of contemporary evolution in native species.

Global Magnetospheric Evolution Effected by Sudden Ring Current Injection

NASA Astrophysics Data System (ADS)

Park, Geunseok; No, Jincheol; Kim, Kap-Sung; Choe, Gwangson; Lee, Junggi

2016-04-01

The dynamical evolution of the Earth's magnetosphere loaded with a transiently enhanced ring current is investigated by global magnetohydrodynamic simulations. Two cases with different values of the primitive ring current are considered. In one case, the initial ring current is strong enough to create a magnetic island in the magnetosphere. The magnetic island readily reconnects with the earth-connected ambient field and is destroyed as the system approaches a steady equilibrium. In the other case, the initial ring current is not so strong, and the initial magnetic field configuration bears no magnetic island, but features a wake of bent field lines, which is smoothed out through the relaxing evolution of the magnetosphere. The relaxation time of the magnetosphere is found to be about five to six minutes, over which the ring current is reduced to about a quarter of its initial value. Before reaching a quasi-steady state, the magnetosphere is found to undergo an overshooting expansion and a subsequent contraction. Fast and slow magnetosonic waves are identified to play an important role in the relaxation toward equilibrium. Our study suggests that a sudden injection of the ring current can generate an appreciable global pulsation of the magnetosphere.

Global Evolution of the Earth's Magnetosphere in Response to a Sudden Ring Current Injection

NASA Astrophysics Data System (ADS)

No, Jincheol; Choe, Gwangson; Park, Geunseok

2014-05-01

The dynamical evolution of the Earth's magnetosphere loaded with a transiently enhanced ring current is investigated by global magnetohydrodynamic simulations. Two cases with different values of the primitive ring current are considered. In one case, the initial ring current is strong enough to create a magnetic island in the magnetosphere. The magnetic island readily reconnects with the earth-connected ambient field and is destroyed as the system approaches a steady equilibrium. In the other case, the initial ring current is not so strong, and the initial magnetic field configuration bears no magnetic island, but features a wake of bent field lines, which is smoothed out through the relaxing evolution of the magnetosphere. The relaxation time of the magnetosphere is found to be about five to six minutes, over which the ring current is reduced to about a quarter of its initial value. Before reaching a steady state, the magnetosphere is found to undergo an overshooting expansion and a subsequent contraction. Fast and slow magnetosonic waves are identified to play an important role in the relaxation toward equilibrium. Our study suggests that a sudden injection of the ring current can generate an appreciable global pulsation of the magnetosphere.

Thresholds and the Evolution of Bedrock Channels on the Hawaiian Islands

NASA Astrophysics Data System (ADS)

Raming, L. W.; Whipple, K. X.

2017-12-01

Erosional thresholds are a key component of the non-linear dynamics of bedrock channel incision and long-term landscape evolution. Erosion thresholds, however, have remained difficult to quantify and uniquely identify in landscape evolution. Here we present an analysis of the morphology of canyons on the Hawaiian Islands and put forth the hypothesis that they are threshold-dominated landforms. Geologic(USGS), topographic (USGS 10m DEM), runoff (USGS) and meteorological data (Rainfall Atlas of Hawai`i) were used in an analysis of catchments on the islands of Hawai`i, Kaua`i, Lāna`i, Maui, and Moloka'i. Channel incision was estimated by differencing the present topography from reconstructed pre-incision volcanic surfaces. Four key results were obtained from our analysis: (1) Mean total incision ranged from 11 to 684 m and exhibited no correlation with incision duration. (2) In major canyons on the Islands of Hawaii and Kauai rejuvenated-stage basalt flow outcrops at river level show incision effectively ceased after a period no longer than 100 ka and 1.4 Ma, respectively. (3) Mean canyon wall gradient below knickpoints decreases with volcano age, with a median value of 1 measured on Hawaii and of 0.7 on Kauai. (4) Downstream of major knickpoints which demarcate the upper limits of deep canyons, channel profiles have near uniform channel steepness with most values ranging between 60 and 100. The presence of uniform channel steepness (KSN) implies uniform bed shear stress and typically is interpreted as a steady-state balance between uplift and incision in tectonically active landscapes. However, this is untenable for Hawaiian canyons and subsequently we posit that uniform KSN represents a condition where flood shear stress has been reduced to threshold values and incision reduced to near zero. Uniform KSN values decrease with rainfall, consistent with wetter regions generating threshold shear stress at lower KSN. This suggests that rapid incision occurred during brief intervals where thresholds were exceeded through a combination of initial slope, over-steeping due to cliff formation, and available runoff as function of climate. From this analysis, we find significant evidence of the role of thresholds in landscape evolution and an alternative framework for viewing the evolution of the Hawaiian Islands.

Long-term landscape evolution of the Basal Complexes of Fuerteventura and La Gomera Islands, Canary Archipelago

NASA Astrophysics Data System (ADS)

Mansour, Sherif; Glasmacher, Ulrich A.; Albinger, Marie; Stoeckli, Daniel F.

2014-05-01

The Canarias archipelago consists from seven volcanic islands located at the northwestern African margin. Among them only Fuerteventura and La Gomera islands show distinctive wide exposures of the basal complex (BC) that is characteristic with complex geological history. The basal complex was exposed on the western part of Fuerteventura and northwestern sector of La Gomera because of giant landslide(s) which have removed most of the shield stage volcanic rocks (Ancochea et al., 1996; 2006; Stillman, 1999). Generally, landslides are a common feature in the earlier constructive stages of the entire archipelago and many other volcanic islands (McGuire, 1996). Integration of low temperature thermochronological data, and time-Temperature (t-T) numerical modelling have proven to be a powerful tool for reconstructing the thermal and tectonic history, defining and quantifying long-term landscape evolution in variety of geological settings. Therefore, zircon and apatite fission-track techniques and t-T paths modelling were applied to 36 samples representing the main rock units of the BC on both islands. Fuerteventura BC has experienced two very rapid cooling/exhumation events. While, La Gomera BC shows one long-lived very fast cooling/exhumation event. Interestingly, these very rapid cooling/exhumation events are synchronous with these major landslides. There are many reasons for the major landslides on such a volcanic island (see e.g. McGuire, 1996)., But, the most sufficient triggers for these huge mass wasting/landslides events on Fuerteventura and La Gomera are recommended to be the continuous igneous intrusions and dikes which have the potential to decrease the edifice stability, igneous extrusions which add new materials at the surface leading to over-steeping and overloading (McGuire, 1996), and major climatic changes of the Middle Miocene Climatic Optimum (Herold et al., 2011). References Ancochea, E., Brändle, J.L., Cubas, C.R.,Hernán, F.,Huertas, M.J., 1996. Volcanic complexes in the eastern ridge of the Canary Islands: the Miocene activity of the Island of Fuerteventura. Journal of Volcanology and Geothermal Research 70, 183-204. Ancochea, E., Hernán, F., Huertas, M.J., Brändle, J.L., Herrera, R., 2006. A new chronostratigraphical and evolutionary model for La Gomera: implications for the overall evolution of the Canarian Archipelago. Journal of Volcanology and Geothermal Research 157, 271-293. Herold, N., Huber, M., Greenwood, D.R., Müller, R.D., Seton, M., 2011. Early to Middle Miocene monsoon climate in Australia. Geology 39, 3-6. McGuire, W.J., 1996. Volcano instability: a review of contemporary themes. In: McGuire, W.J., Jones, A.P., Neuberg, J. (Eds.), Volcano Instability on the Earth and Terrestrial Planets. Geological Society of London, Special Publication 110, 1-23. Stillman, C.J., 1999. Giant Miocene landslides and the evolution of Fuerteventura, Canary Islands. Journal of Volcanology and Geothermal Research 94, 89-104.

Magnetic islands produced by reconnection in large current layers: A statistical approach to modeling at global scales

NASA Astrophysics Data System (ADS)

Fermo, Raymond Luis Lachica

2011-12-01

Magnetic reconnection is a process responsible for the conversion of magnetic energy into plasma flows in laboratory, space, and astrophysical plasmas. A product of reconnection, magnetic islands have been observed in long current layers for various space plasmas, including the magnetopause, the magnetotail, and the solar corona. In this thesis, a statistical model is developed for the dynamics of magnetic islands in very large current layers, for which conventional plasma simulations prove inadequate. An island distribution function f characterizes islands by the flux they contain psi and the area they enclose A. An integro-differential evolution equation for f describes their creation at small scales, growth due to quasi-steady reconnection, convection along the current sheet, and their coalescence with one another. The steady-state solution of the evolution equation predicts a distribution of islands in which the signature of island merging is an asymmetry in psi-- r phase space. A Hall MHD (magnetohydrodynamic) simulation of a very long current sheet with large numbers of magnetic islands is used to explore their dynamics, specifically their growth via two distinct mechanisms: quasi-steady reconnection and merging. The results of the simulation enable validation of the statistical model and benchmarking of its parameters. A PIC (particle-in-cell) simulation investigates how secondary islands form in guide field reconnection, revealing that they are born at electron skin depth scales not as islands from the tearing instability but as vortices from a flow instability. A database of 1,098 flux transfer events (FTEs) observed by Cluster between 2001 and 2003 compares favorably with the model's predictions, and also suggests island merging plays a significant role in the magnetopause. Consequently, the magnetopause is likely populated by many FTEs too small to be recognized by spacecraft instrumentation. The results of this research suggest that a complete theory of reconnection in large current sheets should account for the disparate separation of scales---from the kinetic scales at which islands are produced to the macroscale objects observed in the systems in question.

GPU-Based Point Cloud Superpositioning for Structural Comparisons of Protein Binding Sites.

PubMed

Leinweber, Matthias; Fober, Thomas; Freisleben, Bernd

2018-01-01

In this paper, we present a novel approach to solve the labeled point cloud superpositioning problem for performing structural comparisons of protein binding sites. The solution is based on a parallel evolution strategy that operates on large populations and runs on GPU hardware. The proposed evolution strategy reduces the likelihood of getting stuck in a local optimum of the multimodal real-valued optimization problem represented by labeled point cloud superpositioning. The performance of the GPU-based parallel evolution strategy is compared to a previously proposed CPU-based sequential approach for labeled point cloud superpositioning, indicating that the GPU-based parallel evolution strategy leads to qualitatively better results and significantly shorter runtimes, with speed improvements of up to a factor of 1,500 for large populations. Binary classification tests based on the ATP, NADH, and FAD protein subsets of CavBase, a database containing putative binding sites, show average classification rate improvements from about 92 percent (CPU) to 96 percent (GPU). Further experiments indicate that the proposed GPU-based labeled point cloud superpositioning approach can be superior to traditional protein comparison approaches based on sequence alignments.

Investigation of island formation due to RMPs in DIII-D plasmas with the SIESTA resistive MHD equilibrium code

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hirshman, S. P.; Shafer, M. W.; Seal, S. K.

The SIESTA magnetohydrodynamic (MHD) equilibrium code has been used to compute a sequence of ideally stable equilibria resulting from numerical variation of the helical resonant magnetic perturbation (RMP) applied to an axisymmetric DIII-D plasma equilibrium. Increasing the perturbation strength at the dominant m=2, n=-1 , resonant surface leads to lower MHD energies and increases in the equilibrium island widths at the m=2 (and sidebands) surfaces, in agreement with theoretical expectations. Island overlap at large perturbation strengths leads to stochastic magnetic fields which correlate well with the experimentally inferred field structure. The magnitude and spatial phase (around the dominant rational surfaces)more » of the resonant (shielding) component of the parallel current are shown to change qualitatively with the magnetic island topology.« less

Analysis of Island Formation Due to RMPs in D3D Plasmas Using SIESTA

NASA Astrophysics Data System (ADS)

Hirshman, Steven; Shafer, Morgan; Seal, Sudip; Canik, John

2015-11-01

By varying the initial helical perturbation amplitude of Resonant Magnetic Perturbations (RMPs) applied to a Doublet III-D (DIII-D) plasma, a variety of meta-stable equilibrium are scanned using the SIESTA MHD equilibrium code. It is found that increasing the perturbation strength at the dominant m =2 resonant surface leads to lower MHD energies and significant increases in the equilibrium island widths at the m =2 (and sidebands) surfaces. Island overlap eventually leads to stochastic magnetic fields which correlate well with the experimentally inferred field line structure. The magnitude and spatial phase (around associated rational surfaces) of resonant (shielding) components of the parallel current is shown to be correlated with the magnetic island topology. Work supported by U.S. DOE under Contract DE-AC05-00OR22725 with UT-Battelle, LLC.

Investigation of island formation due to RMPs in DIII-D plasmas with the SIESTA resistive MHD equilibrium code

DOE PAGES

Hirshman, S. P.; Shafer, M. W.; Seal, S. K.; ...

2016-03-03

The SIESTA magnetohydrodynamic (MHD) equilibrium code has been used to compute a sequence of ideally stable equilibria resulting from numerical variation of the helical resonant magnetic perturbation (RMP) applied to an axisymmetric DIII-D plasma equilibrium. Increasing the perturbation strength at the dominant m=2, n=-1 , resonant surface leads to lower MHD energies and increases in the equilibrium island widths at the m=2 (and sidebands) surfaces, in agreement with theoretical expectations. Island overlap at large perturbation strengths leads to stochastic magnetic fields which correlate well with the experimentally inferred field structure. The magnitude and spatial phase (around the dominant rational surfaces)more » of the resonant (shielding) component of the parallel current are shown to change qualitatively with the magnetic island topology.« less

Maps showing the change in modern sediment thickness on the Inner Continental Shelf offshore of Fire Island, New York, between 1996-97 and 2011

USGS Publications Warehouse

Schwab, William C.; Baldwin, Wayne E.; Denny, Jane F.

2015-01-01

The U.S. Geological Survey mapped approximately 336 square kilometers of the lower shoreface and inner continental shelf offshore of Fire Island, New York, in 1996 and 1997, using high-resolution sidescan-sonar and seismic-reflection systems, and again in 2011, using interferometric sonar and high-resolution chirp seismic-reflection systems. This report presents a comparison of sediment thickness and distribution as mapped during these two investigations. These spatial data support research on the Quaternary evolution of the Fire Island coastal system and provide baseline information for research on coastal processes along southern Long Island.

Interplay between intrinsic plasma rotation and magnetic island evolution in disruptive discharges

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ronchi, G.; Severo, J. H. F.; Salzedas, F.

The behavior of the intrinsic toroidal rotation of the plasma column during the growth and eventual saturation of m/n = 2/1 magnetic islands, triggered by programmed density rise, has been carefully investigated in disruptive discharges in TCABR. The results show that, as the island starts to grow and rotate at a speed larger than that of the plasma column, the angular frequency of the intrinsic toroidal rotation increases and that of the island decreases, following the expectation of synchronization. As the island saturates at a large size, just before a major disruption, the angular speed of the intrinsic rotation decreasesmore » quite rapidly, even though the island keeps still rotating at a reduced speed. This decrease of the toroidal rotation is quite reproducible and can be considered as an indicative of disruption.« less

Geologic youth of galapagos islands confirmed by marine stratigraphy and paleontology.

PubMed

Hickman, C S; Lipps, J H

1985-03-29

Six distinctive types of fossiliferous marine deposits occur on the Galádpagos Islands that provide evidence for the age of emergence of the islands above sea level and hence a maximum age for the islands' terrestrial biota. These subtidal to supratidal deposits include (i) volcanic tuffs with fossils, (ii) limestones and sandstones interbedded with basalt, (iii) terrace deposits, (iv) beach rock, (v) supratidal talus deposits, and (vi) recently uplifted tidal and subtidal rocks and sand. With the exception of (vi), the deposits were previously assigned ages varying from Miocene to Pleistocene, but all are less than about 2 million years old. This age, together with independently determined geologic ages, indicate that the islands emerged from the sea relatively recently and that all evolution of the islands' unique terrestrial biota occurred within the past 3 to 4 million years.

Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid

PubMed Central

Pankey, M. Sabrina; Minin, Vladimir N.; Imholte, Greg C.; Suchard, Marc A.; Oakley, Todd H.

2014-01-01

Despite contingency in life’s history, the similarity of evolutionarily convergent traits may represent predictable solutions to common conditions. However, the extent to which overall gene expression levels (transcriptomes) underlying convergent traits are themselves convergent remains largely unexplored. Here, we show strong statistical support for convergent evolutionary origins and massively parallel evolution of the entire transcriptomes in symbiotic bioluminescent organs (bacterial photophores) from two divergent squid species. The gene expression similarities are so strong that regression models of one species’ photophore can predict organ identity of a distantly related photophore from gene expression levels alone. Our results point to widespread parallel changes in gene expression evolution associated with convergent origins of complex organs. Therefore, predictable solutions may drive not only the evolution of novel, complex organs but also the evolution of overall gene expression levels that underlie them. PMID:25336755

Experimental evolution reveals hidden diversity in evolutionary pathways.

PubMed

Lind, Peter A; Farr, Andrew D; Rainey, Paul B

2015-03-25

Replicate populations of natural and experimental organisms often show evidence of parallel genetic evolution, but the causes are unclear. The wrinkly spreader morph of Pseudomonas fluorescens arises repeatedly during experimental evolution. The mutational causes reside exclusively within three pathways. By eliminating these, 13 new mutational pathways were discovered with the newly arising WS types having fitnesses similar to those arising from the commonly passaged routes. Our findings show that parallel genetic evolution is strongly biased by constraints and we reveal the genetic bases. From such knowledge, and in instances where new phenotypes arise via gene activation, we suggest a set of principles: evolution proceeds firstly via pathways subject to negative regulation, then via promoter mutations and gene fusions, and finally via activation by intragenic gain-of-function mutations. These principles inform evolutionary forecasting and have relevance to interpreting the diverse array of mutations associated with clinically identical instances of disease in humans.

Impact of neoclassical tearing mode–turbulence multi-scale interaction in global confinement degradation and magnetic island stability

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bardoczi, Lazlo; Carter, Troy A.; La Haye, Robert J.

Recent measurements of turbulent density (more » $$\\tilde{n}$$) and electron-temperature ($$\\tilde{T}$$ e) fluctuations have reported turbulence modifications by Neoclassical Tearing Mode (NTM) islands: turbulence decreases (increases) inside (outside) the island region when the island width (W) exceeds a threshold (W T), in qualitative agreement with gyrokinetic simulations. As the cross-field transport in tokamaks is dominantly driven by turbulence, these observations call into question the conventional understanding of confinement degradation by NTMs and magnetic island stability physics. The experimental data presented here support the following points: (i) When profiles flatten at the O-point and gradients increase outside of the island, $$\\tilde{n}$$ decreases (increases) inside (outside) the island. Along with the parallel transport resulting in increased fluxes inside the island, the increase of $$\\tilde{n}$$ outside of the island offers an explanation for the temporal increase of fluxes in that region. As the plasma stored energy (WMHD) gradually decreases in synchronization with the island growth and saturation, gradients, $$\\tilde{n}$$ and fluxes also decrease outside the island until they become about the same as before NTM onset. These fluxes balance the constant sources, and the plasma comes to a steady state at lower W MHD. (ii) Turbulence reduction in the O-point region has a destabilizing effect on the island. This effect is, however, nearly compensated by the reduced confinement. In conclusion, these observations suggest that driving turbulence in the island region could lead to smaller saturated islands offering a path toward better confinement and safer operation of reactor-scale fusion devices.« less

Impact of neoclassical tearing mode–turbulence multi-scale interaction in global confinement degradation and magnetic island stability

DOE PAGES

Bardoczi, Lazlo; Carter, Troy A.; La Haye, Robert J.; ...

2017-12-08

Recent measurements of turbulent density (more » $$\\tilde{n}$$) and electron-temperature ($$\\tilde{T}$$ e) fluctuations have reported turbulence modifications by Neoclassical Tearing Mode (NTM) islands: turbulence decreases (increases) inside (outside) the island region when the island width (W) exceeds a threshold (W T), in qualitative agreement with gyrokinetic simulations. As the cross-field transport in tokamaks is dominantly driven by turbulence, these observations call into question the conventional understanding of confinement degradation by NTMs and magnetic island stability physics. The experimental data presented here support the following points: (i) When profiles flatten at the O-point and gradients increase outside of the island, $$\\tilde{n}$$ decreases (increases) inside (outside) the island. Along with the parallel transport resulting in increased fluxes inside the island, the increase of $$\\tilde{n}$$ outside of the island offers an explanation for the temporal increase of fluxes in that region. As the plasma stored energy (WMHD) gradually decreases in synchronization with the island growth and saturation, gradients, $$\\tilde{n}$$ and fluxes also decrease outside the island until they become about the same as before NTM onset. These fluxes balance the constant sources, and the plasma comes to a steady state at lower W MHD. (ii) Turbulence reduction in the O-point region has a destabilizing effect on the island. This effect is, however, nearly compensated by the reduced confinement. In conclusion, these observations suggest that driving turbulence in the island region could lead to smaller saturated islands offering a path toward better confinement and safer operation of reactor-scale fusion devices.« less

Detailed Ar-Ar Geochronology of Volcanism at Minna Bluff, Antarctica: Two-Phased Growth and Influence on Ross Ice Shelf

NASA Astrophysics Data System (ADS)

Ross, J. I.; McIntosh, W. C.; Wilch, T. I.

2012-12-01

Minna Bluff has been a significant topographic barrier to the flow of the Ross Ice Shelf since the mid-Miocene. Detailed Ar-Ar analyses of kaersutite and sanidine phenocrysts, and groundmass concentrates from volcanic units indicate an overall west to east progression of volcanic activity. Eruptions of basaltic to intermediate lavas, domes, and scoria cones started at ~12 Ma in at what is now the eastern most point of Minna Bluff, "Minna Hook." Activity was centered in this area for ~4 Ma, constructing a pre-Minna Bluff island. Multiple glacial unconformities found at Minna Hook suggest repeated interaction with large warm-based, erosive ice sheets. Activity migrated westward from Minna Bluff Island at 7-8 Ma closing the gap created by the island and the mainland. Significant edifice construction continued until 4-5 Ma with sporadic and parasitic scoria cone eruptions, possibly associated with Mt. Discovery activity, continuing until 2 Ma. The orientations of Minna Bluff's two major axes are strongly controlled by regional tectonic features. Minna Bluff's E-W axis, McIntosh Cliffs, is sub-parallel to the Radial Lineament and the N-S axis, Minna Hook, appears as extension of faulting bounding the Terror Rift. The constructional evolution of the 70km long volcanic complex has an important role in interpreting the climate signals recovered by the ANDRILL Project. Minna Bluff influenced the material delivered to the AND-1B drill site (ANDRILL MIS 2006-2007) in three critical ways: 1) Minna Bluff diverted upstream material, 2) provided a pinning and stabilizing point for the Ross Ice Shelf, possible controlling the calving line prior to the emergence of Ross Island, and 3) was a significant source of fresh volcanic material throughout much of the period recovered by ANDRILL MIS. For example, a kaersutite-bearing clast recovered from 822.78 mbsf in AND-1B yielded an age of 8.53±0.51 Ma, and was likely derived from Minna Bluff. The results from this study can be incorporated into detailed glacier and ice-sheet models of the McMurdo Sound region, a critical area in the Ross Ice Sheet and global climate system.

Geochemical Composition of Volcanic Rocks from the May 2003 Eruption of Anatahan Volcano, Mariana Islands

NASA Astrophysics Data System (ADS)

Wade, J. A.; Plank, T.; Stern, R.; Hilton, D.; Fischer, T. P.; Moore, R.; Trusdell, F.; Sako, M.

2003-12-01

The first historical eruption of Anatahan volcano began on May 10, 2003, from the easternmost of the island's two craters. Samples of tephra, scoria, and bombs, collected in May by a MARGINS-supported rapid-response team, were analyzed for 34 trace elements by solution ICP-MS at Boston University and Sr-Nd-Pb isotopic composition at the University of Texas-Dallas. The new eruptive materials can be compared with an extensive suite of pre-existing volcanics (basalts through dacites) from Anatahan sampled by the USGS in 1990 and 1992, and analyzed by XRF and INAA. While most Mariana volcanoes erupt basalts and basaltic andesites, Anatahan is unusual for erupting a wide range of compositions, from basalt to dacite, and thus provides the best opportunity for addressing questions of magma evolution in this classic island arc. The newly erupted scoria and pumice are andesites and dacites that are among the most silicic materials erupted in the northern Mariana islands. The recent eruptives are highly homogeneous; 13 samples vary by only 3-5% relative standard deviation for incompatible trace elements. Isotopic compositions (0.703450 +/- 2 87Sr/86Sr and 18.806 +/- 5 206Pb/204Pb) are within the range of previously measured samples from Anatahan and other volcanic centers in the Marianas. The combined dataset for Anatahan defines virtually a single liquid line of descent. This is consistent with nearly-parallel REE patterns, and small variations in the ratios of the most incompatible trace elements (e.g., Th/Rb varies by <10% over the entire fractionation trend). Low values of Th/La and Th/Zr in Anatahan volcanics provide evidence against partial melting of crustal material as a source of the silicic magmas, as these ratios are highly senstive to apatite- and zircon- saturated crustal melts. Instead, the basalts, andesites and dacites of Anatahan appear to be related predominantly by crystal fractionation with little evidence for assimilation of crustal melts. The new data can also be used to make new inferences as to the source characteristics of Anatahan magma. Trace element ratios Th/La and Sm/La distinguish island-to-island differences in the subducted sediment components incorporated into the Mariana arc magmas. Most Mariana volcanics plot on a mixing line between depleted mantle and the bulk subducting sediment Th/La (0.14). Anatahan, however, mixes to slightly higher Th/La (0.16), which could be caused by the shallow loss of the top 50 m of the sedimentary column (pelagic clay) during subduction.

Parallel Electrochemical Treatment System and Application for Identifying Acid-Stable Oxygen Evolution Electrocatalysts

DOE PAGES

Jones, Ryan J. R.; Shinde, Aniketa; Guevarra, Dan; ...

2015-01-05

There are many energy technologies require electrochemical stability or preactivation of functional materials. Due to the long experiment duration required for either electrochemical preactivation or evaluation of operational stability, parallel screening is required to enable high throughput experimentation. We found that imposing operational electrochemical conditions to a library of materials in parallel creates several opportunities for experimental artifacts. We discuss the electrochemical engineering principles and operational parameters that mitigate artifacts int he parallel electrochemical treatment system. We also demonstrate the effects of resistive losses within the planar working electrode through a combination of finite element modeling and illustrative experiments. Operationmore » of the parallel-plate, membrane-separated electrochemical treatment system is demonstrated by exposing a composition library of mixed metal oxides to oxygen evolution conditions in 1M sulfuric acid for 2h. This application is particularly important because the electrolysis and photoelectrolysis of water are promising future energy technologies inhibited by the lack of highly active, acid-stable catalysts containing only earth abundant elements.« less

Geology of Saipan, Mariana Islands; Part 1, General geology

USGS Publications Warehouse

Cloud, Preston E.; Schmidt, Robert George; Burke, Harold W.

1956-01-01

Saipan, situated about 15° N. and 146° E., is one of the larger and more southerly of the Mariana Islands. The 15 small islands of this chain are strung along an eastwardly convex ridge for more than 400 miles north to south, midway between Honshu and New Guinea and about 1,200 miles east of the Philippines. Paralleling this ridge 60 to 100 miles further east is a deep submarine trench, beyond which lies the Pacific Basin proper. To the west is the Philippine Sea, generally deeper than 2,000 fathoms. The trench coincides with a zone of negative gravity anomalies, earthquake foci occur at increasing depths westward from it, and silica- and alumina-rich volcanic rocks characterize the emergent island chain itself. The contrast between these features and those of the Pacific Basin proper to the east is held to favor the conclusion that the Mariana island arc and trench define the structural and petrographic front of Asia

Seismicity of the Earth 1900-2007, Japan and Vicinity

USGS Publications Warehouse

Rhea, Susan; Tarr, Arthur C.; Hayes, Gavin P.; Villaseñor, Antonio; Benz, Harley

2010-01-01

This map shows details of Japan and vicinity not visible in an earlier publication, U.S. Geological Survey Scientific Investigations Map 3064. Japan and its island possessions lie across four major tectonic plates: Pacific plate, North America plate; Eurasia plate; and Philippine Sea plate. The Pacific plate is subducted into the mantle, beneath Hokkaido and northern Honshu, along the eastern margin of the Okhotsk microplate, a proposed subdivision of the North America plate (Bird, 2003). Farther south, the pacific plate is subducted beneath volcanic islands along the eastern margin of the Philippine Sea plate. This 2,200 km-long zone of subduction of the Pacific plate is responsible for the creation of the deep offshore Ogasawara and Japan trenches as well as parallel chains of islands and volcanoes, typical of the Circumpacific island arcs. Similarly, the Philippine Sea plate is itself subducting under the Eurasia plate along a zone, extending from Taiwan to southern Honshu, that comprises the Ryuku Islands and the Nansei-Shonto trench.

Speciation on oceanic islands: rapid adaptive divergence vs. cryptic speciation in a Guadalupe Island songbird (Aves: Junco).

PubMed

Aleixandre, Pau; Hernández Montoya, Julio; Milá, Borja

2013-01-01

The evolutionary divergence of island populations, and in particular the tempo and relative importance of neutral and selective factors, is of central interest to the study of speciation. The rate of phenotypic evolution upon island colonization can vary greatly among taxa, and cases of convergent evolution can further confound the inference of correct evolutionary histories. Given the potential lability of phenotypic characters, molecular dating of insular lineages analyzed in a phylogenetic framework provides a critical tool to test hypotheses of phenotypic divergence since colonization. The Guadalupe junco is the only insular form of the polymorphic dark-eyed junco (Junco hyemalis), and shares eye and plumage color with continental morphs, yet presents an enlarged bill and reduced body size. Here we use variation in mtDNA sequence, morphological traits and song variables to test whether the Guadalupe junco evolved rapidly following a recent colonization by a mainland form of the dark-eyed junco, or instead represents a well-differentiated "cryptic" lineage adapted to the insular environment through long-term isolation, with plumage coloration a result of evolutionary convergence. We found high mtDNA divergence of the island lineage with respect to both continental J. hyemalis and J. phaeonotus, representing a history of isolation of about 600,000 years. The island lineage was also significantly differentiated in morphological and male song variables. Moreover, and contrary to predictions regarding diversity loss on small oceanic islands, we document relatively high levels of both haplotypic and song-unit diversity on Guadalupe Island despite long-term isolation in a very small geographic area. In contrast to prevailing taxonomy, the Guadalupe junco is an old, well-differentiated evolutionary lineage, whose similarity to mainland juncos in plumage and eye color is due to evolutionary convergence. Our findings confirm the role of remote islands in driving divergence and speciation, but also their potential role as repositories of ancestral diversity.

Effects of Isolation by Continental Islands in the Seto Inland Sea, Japan, on Genetic Diversity of the Large Japanese Field Mouse, Apodemus speciosus (Rodentia: Muridae), Inferred from the Mitochondrial Dloop Region.

PubMed

Sato, Jun J; Tasaka, Yurina; Tasaka, Ryoya; Gunji, Kentaro; Yamamoto, Yuya; Takada, Yasushi; Uematsu, Yasushi; Sakai, Eiichi; Tateishi, Takashi; Yamaguchi, Yasunori

2017-04-01

To study the effects of post-glacial isolation by islands on population genetic diversity and differentiation of the large Japanese field mouse, Apodemus speciosus, we examined partial nucleotide sequences of the mitochondrial Dloop region (ca. 300 bp) in 231 individuals collected from islands in the Seto Inland Sea and adjacent regions on Honshu and Shikoku Islands in the western part of the Japanese archipelago. Molecular phylogenetic and network analyses showed that haplotypes in each island tended to form monophyletic groups, while those in Honshu and Shikoku (the major Japanese islands) showed scattered relationships and were connected with island haplotypes. These observations suggest that a set of Honshu and Shikoku haplotypes became the ancestral lineages of the island population. No gene flow was detected among island populations, indicating that independent evolution occurred on each island, without the influence of human activities, since the establishment of the islands in the Holocene. Population genetic diversities on each island were lower than those on Honshu and Shikoku. Comparison between genetic diversity and island area size showed positive correlations and supported the suggestion that genetic drift is a major factor that shaped the current haplotype constitution of the islands in the Seto Inland Sea.

Electron acceleration by magnetic islands in a dynamically evolved coronal current sheet

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Shaohua, E-mail: shzhang@mail.iggcas.ac.cn; Wang, Bin; Meng, Lifei

2016-03-25

This work simulated the electron acceleration by magnetic islands in a drastically evolved solar coronal current sheet via the combined 2.5-dimensional (2.5D) resistive Magnetohydrodynamics (MHD) and guiding-center approximation test-particle methods. With high magnetic Reynolds number of 105, the long–thin current sheet is evolved into a chain of magnetic islands, growing in size and coalescing with each other, due to tearing instability. The acceleration of electrons is studied in one typical phase when several large magnetic islands are formed. The results show that the electrons with an initial Maxwell distribution evolve into a heavy-tailed distribution and more than 20% of themore » electrons can be accelerated higher than 200 keV within 0.1 second and some of them can even be energized up to MeV ranges. The most energetic electrons have a tendency to be around the outer regions of the magnetic islands or to be located in the small secondary magnetic islands. We find that the acceleration and spatial distributions of the energetic electrons is caused by the trapping effect of the magnetic islands and the distributions of the parallel electric field E{sub p}.« less

Characterization of switching field distributions in Ising-like magnetic arrays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fraleigh, Robert D.; Kempinger, Susan; Lammert, Paul E.

The switching field distribution within arrays of single-domain ferromagnetic islands incorporates both island-island interactions and quenched disorder in island geometry. Separating these two contributions is important for disentangling the effects of disorder and interactions in themagnetization dynamics of island arrays. Using submicron, spatially resolved Kerr imaging in an external magnetic field for islands with perpendicular magnetic anisotropy, we map out the evolution of island arrays during hysteresis loops. Resolving and tracking individual islands across four different lattice types and a range of interisland spacings, we can extract the individual switching fields of every island and thereby quantitatively determine the contributionsmore » of interactions and quenched disorder in the arrays. The width of the switching field distribution is found to be well fitted by a simple model comprising the sum of an array-independent contribution (interpreted as disorder induced) and a term proportional to the maximum field the entire rest of the array could exert on a single island, i.e., in a fully polarized state. This supports the claim that disorder in these arrays is primarily a single-island property and provides a methodology by which to quantify such disorder.« less

Characterization of switching field distributions in Ising-like magnetic arrays

NASA Astrophysics Data System (ADS)

Fraleigh, Robert D.; Kempinger, Susan; Lammert, Paul E.; Zhang, Sheng; Crespi, Vincent H.; Schiffer, Peter; Samarth, Nitin

2017-04-01

The switching field distribution within arrays of single-domain ferromagnetic islands incorporates both island-island interactions and quenched disorder in island geometry. Separating these two contributions is important for disentangling the effects of disorder and interactions in the magnetization dynamics of island arrays. Using submicron, spatially resolved Kerr imaging in an external magnetic field for islands with perpendicular magnetic anisotropy, we map out the evolution of island arrays during hysteresis loops. Resolving and tracking individual islands across four different lattice types and a range of interisland spacings, we can extract the individual switching fields of every island and thereby quantitatively determine the contributions of interactions and quenched disorder in the arrays. The width of the switching field distribution is found to be well fitted by a simple model comprising the sum of an array-independent contribution (interpreted as disorder induced) and a term proportional to the maximum field the entire rest of the array could exert on a single island, i.e., in a fully polarized state. This supports the claim that disorder in these arrays is primarily a single-island property and provides a methodology by which to quantify such disorder.

Streamlined Islands in Ares Valles

NASA Technical Reports Server (NTRS)

2002-01-01

(Released 10 June 2002) The Science Although liquid water is not stable on the surface of Mars today, there is substantial geologic evidence that large quantities of water once flowed across the surface in the distant past. Streamlined islands, shown here, are one piece of evidence for this ancient water. The tremendous force of moving water, possibly from a catastrophic flood, carved these teardrop-shaped islands within a much larger channel called Ares Valles. The orientation of the islands can be used as an indicator of the direction the water flowed. The islands have a blunt end that is usually associated with an obstacle, commonly an impact crater. The crater is resistant to erosion and creates a geologic barrier around which the water must flow. As the water flows past the obstacle, its erosive power is directed outward, leaving the area in the lee of the obstacle relatively uneroded. However, some scientists have also argued that the area in the lee of the obstacle might be a depositional zone, where material is dropped out of the water as it briefly slows. The ridges observed on the high-standing terrain in the leeward parts of the islands may be benches carved into the rock that mark the height of the water at various times during the flood, or they might be indicative of layering in the leeward rock. As the water makes its way downstream, the interference of the water flow by the obstacle is reduced, and the water that was diverted around the obstacle rejoins itself at the narrow end of the island. Therefore, the direction of the water flow is parallel to the orientation of the island, and the narrow end of the island points downstream. In addition to the streamlined islands, the channel floor exhibits fluting that is also suggestive of flowing water. The flutes (also known as longitudinal grooves) are also parallel to the direction of flow, indicating that the water flow was turbulent and probably quite fast, which is consistent with the hypothesized catastrophic floods that came through Ares Valles. The Story In symbolism only, these guppy-shaped islands and current-like flutes of land beside them may conjure up a mental image of a flowing Martian river. This picture would only be half-right. Scientifically, no fish ever swam this channel, but these landforms do reveal that catastrophic floods of rushing water probably patterned the land in just this way. Geologists who study flood areas believe that a tremendous force of moving water probably carved both the islands and the small, parallel, 'current-like' ridges around them. The blunt end of the islands (the 'heads' of the 'fish') are probably ancient impact craters that posed obstacles to the water as it rushed down the channel in torrents. Because a crater is resistant to erosion, it creates a geologic barrier around which the water must flow. As the water makes its way downstream, the crater's interference with the water flow is reduced, so the water that was diverted around the obstacle rejoins at the narrow end of the island (the 'tail' of the 'fish'). Therefore, from this information, you can tell that the water flowed from the southeast to the northwest. As a rule of thumb for the future, you can say that the narrow end of the island points downstream. The result may be the island behind the crater, but geologists disagree about the exact process by which the island forms. Some scientists argue that the erosive power of the water is directed outward, leaving the area behind, or in the lee of, the obstacle relatively untouched. Other scientists argue that the water slows when it encounters the crater obstacle, and small particles of sand and 'dirt' drop out of the water and are deposited in the lee. There's another small associated uncertainty too. Look closely at the edges of the islands and notice how the land is terraced. These ledges might mark the height of the water at various times during the flood . . . or they might be an indication that layering occurred. It all depends on your hypothesis. Like the streamlined islands, the current-like flutes are parallel to the direction of flow, indicating that the water flow was turbulent and probably quite fast, which is consistent with the hypothesis that catastrophic floods broke forth in this region, known as Ares Vallis. Ares Vallis is the region where Pathfinder landed to help understand the possible history of water on Mars. Geologists want to understand not only if there was a catastrophic flood, but why it happened. Both orbiters and landers can add to the information on hand, but some Earth examples might provide clues as well. On our planet, some glacial valleys have had major catastrophic floods that were caused by the sudden outburst and drainage of glacial lakes. The Channeled Scabland in Washington state is great Earthly example of a place where the sudden failure of a glacier ice dam spewed out water, leaving a system of large, dry channels with flutes similar to the ones seen in this image. Did something similar happen to cause this outburst on Mars? Hopefully, future studies of THEMIS and other images will help us understand the answer.

Water-level measurements in Dauphin Island, Alabama, from the 2013 Hurricane Season

USGS Publications Warehouse

Dickhudt, Patrick J.; Sherwood, Christopher R.; DeWitt, Nancy T.

2015-01-01

This report describes the instrumentation, field measurements, and processing methods used by the U.S. Geological Survey to measure atmospheric pressure, water levels, and waves on Dauphin Island, Alabama, in 2013 at part of the Barrier Island Evolution Research project. Simple, inexpensive pressure sensors mounted in shallow wells were buried in the beach and left throughout the hurricane season. Additionally, an atmospheric pressure sensor was mounted on the porch of a private residence to provide a local atmospheric pressure measurement for correcting the submerged pressure records.

Alpine Fault, New Zealand, SRTM Shaded Relief and Colored Height

NASA Image and Video Library

2005-01-06

The Alpine fault runs parallel to, and just inland of, much of the west coast of New Zealand South Island. This view was created from the near-global digital elevation model produced by NASA Shuttle Radar Topography Mission SRTM.

Genomics of parallel adaptation at two timescales in Drosophila

PubMed Central

Begun, David J.

2017-01-01

Two interesting unanswered questions are the extent to which both the broad patterns and genetic details of adaptive divergence are repeatable across species, and the timescales over which parallel adaptation may be observed. Drosophila melanogaster is a key model system for population and evolutionary genomics. Findings from genetics and genomics suggest that recent adaptation to latitudinal environmental variation (on the timescale of hundreds or thousands of years) associated with Out-of-Africa colonization plays an important role in maintaining biological variation in the species. Additionally, studies of interspecific differences between D. melanogaster and its sister species D. simulans have revealed that a substantial proportion of proteins and amino acid residues exhibit adaptive divergence on a roughly few million years long timescale. Here we use population genomic approaches to attack the problem of parallelism between D. melanogaster and a highly diverged conger, D. hydei, on two timescales. D. hydei, a member of the repleta group of Drosophila, is similar to D. melanogaster, in that it too appears to be a recently cosmopolitan species and recent colonizer of high latitude environments. We observed parallelism both for genes exhibiting latitudinal allele frequency differentiation within species and for genes exhibiting recurrent adaptive protein divergence between species. Greater parallelism was observed for long-term adaptive protein evolution and this parallelism includes not only the specific genes/proteins that exhibit adaptive evolution, but extends even to the magnitudes of the selective effects on interspecific protein differences. Thus, despite the roughly 50 million years of time separating D. melanogaster and D. hydei, and despite their considerably divergent biology, they exhibit substantial parallelism, suggesting the existence of a fundamental predictability of adaptive evolution in the genus. PMID:28968391

Evolutionary diversification of the genus Theba (Gastropoda: Helicidae) in space and time: a land snail conquering islands and continents.

PubMed

Greve, Carola; Hutterer, Rainer; Groh, Klaus; Haase, Martin; Misof, Bernhard

2010-11-01

Among oceanic islands, the Canary Islands offer exceptional opportunities for studying speciation processes due to their habitat diversity and well documented geological history. Based on a combined COI+ITS1 data set for more than 140 specimens, we studied the diversification of the land snail genus Theba on the Canary Islands and adjacent African and European continental areas. Phylogenetic analyses resulted in the recognition of 18 genetically distinct clades including at least three new species. Divergence time estimates suggested an evolution of Theba in the Canarian archipelago and an initial radiation on the three eastern-most islands during the Late Oligocene/Early Miocene. Despite the close proximity of NW Africa to the Canary Islands, the main mode of diversification was intra-archipelago speciation rather than independent colonization of the islands from the mainland. Notably, species from Morocco are nested among species from the Canary Islands, indicating re-colonization of the continent from the islands. The re-colonization of NW Africa occurred during the Middle Miocene and led to a remarkable continental radiation. Copyright © 2010 Elsevier Inc. All rights reserved.

Repeated evolution of carnivory among Indo-Australian rodents.

PubMed

Rowe, Kevin C; Achmadi, Anang S; Esselstyn, Jacob A

2016-03-01

Convergent evolution, often observed in island archipelagos, provides compelling evidence for the importance of natural selection as a generator of species and ecological diversity. The Indo-Australian Archipelago (IAA) is the world's largest island system and encompasses distinct biogeographic units, including the Asian (Sunda) and Australian (Sahul) continental shelves, which together bracket the oceanic archipelagos of the Philippines and Wallacea. Each of these biogeographic units houses numerous endemic rodents in the family Muridae. Carnivorous murids, that is those that feed on animals, have evolved independently in Sunda, Sulawesi (part of Wallacea), the Philippines, and Sahul, but the number of origins of carnivory among IAA murids is unknown. We conducted a comprehensive phylogenetic analysis of carnivorous murids of the IAA, combined with estimates of ancestral states for broad diet categories (herbivore, omnivore, and carnivore) and geographic ranges. These analyses demonstrate that carnivory evolved independently four times after overwater colonization, including in situ origins on the Philippines, Sulawesi, and Sahul. In each biogeographic unit the origin of carnivory was followed by evolution of more specialized carnivorous ecomorphs such as vermivores, insectivores, and amphibious rats. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Rock Uplift above the Yakutat Megathrust on Montague Island, Prince William Sound, Alaska

NASA Astrophysics Data System (ADS)

Ferguson, K.; Armstrong, P. A.; Haeussler, P. J.; Arkle, J. C.

2011-12-01

The Yakutat microplate is subducting shallowly (~6°) beneath the North American Plate at a rate of approximately 53 mm/yr to the northwest. Deformation from this flat- slab subduction extends >600 km inland and has resulted in regions of focused rock uplift and exhumation in the Alaska Range, central Chugach Mountains, and St. Elias Mountains. Many questions still remain about how strain is partitioned between these regions of focused uplift, particularly in the Prince William Sound (southern Chugach Mountains) on Montague Island. Montague Island (and adjacent Hinchinbrook Island) are ~20 km above the megathrust where there is a large degree of coupling between the subducting Yakutat microplate and overriding North American Plate. Montague Island is of particular interest because it lies between two areas of rapid rock uplift focused in the St. Elias/eastern Chugach Mountains and the western Chugach Mountains. In the St. Elias/eastern Chugach Mountains, faulting related to collisional processes and bending of fault systems causes rapid rock uplift. About 200 km farther northwest in the western Chugach Mountains, recent rock uplift is caused by underplating along the megathrust that is focused within a syntaxial bend of major fault systems and mountain ranges. Montague Island bounds the southern margin of Prince William Sound, and is steep, narrow, and elongate (81 km long and ~15 km wide). The maximum relief is 914 m, making for very steep, mountainous topography considering the narrow width of the island. During the Mw 9.2 earthquake in 1964, the Patton Bay and Hanning Bay reverse faults were reactivated, with 7 and 5 m of vertical offset, respectively. Both faults dip ~60° NW and strike NE-SW parallel to the long-axis of the island and parallel to geomorphic features including lineaments, elongate valleys, and escarpments. Prominent ~450 m high escarpments are present along the SE-facing side of the island, which suggests rapid and sustained uplift. New apatite (U-Th)/He (AHe) and fission-track (AFT) ages are 1.3 - 1.5 Ma and 4.4 Ma, respectively, at the SW end of Montague Island and AHe ages are 4.4 - 4.6 Ma at the NE end. These age and geomorphic constraints indicate that Montague Island marks a narrow zone of intense deformation probably related to thin-skinned thrust faulting and/or pop-up structures above the megathrust. The youngest AHe ages from Montague Island are similar to those from farther east along the St. Elias - Bagley fault systems implying that the south and east sides of Montague Island, and perhaps the along-trend eastern part of Hinchinbrook Island, may be the westward extension of these fault systems. Additional cooling ages will help constrain the spatial extent of this zone of deformation and potential links with other structural zones caused by Yakutat collision and subduction.

Capture Zone Distributions and Island Morphologies in Organic Epitaxy and Graphene Formation

NASA Astrophysics Data System (ADS)

Pimpinelli, Alberto; Einstein, T. L.

2013-03-01

Stating that island nucleation is an essential step in the formation of an epitaxial or supported layer may appear trivially obvious. However, less trivial is the observation that the size of the critical nucleus plays a crucial role in that it determines both the island density (and therefore the size of domains) and the evolution of the island morphology. In this talk we will describe recent developments in the analysis of capture zone distributions (CZD) specifically tailored for application to organic materials. We will also describe specific features of organic and graphene island morphologies, and discuss how they are related to the nucleation process and to the size of the critical nucleus. Work at UMD supported by NSF-MRSEC, Grant DMR 05-20471 and NSF CHE 07-49949

The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice.

PubMed

Vigueira, C C; Li, W; Olsen, K M

2013-08-01

The two independent domestication events in the genus Oryza that led to African and Asian rice offer an extremely useful system for studying the genetic basis of parallel evolution. This system is also characterized by parallel de-domestication events, with two genetically distinct weedy rice biotypes in the US derived from the Asian domesticate. One important trait that has been altered by rice domestication and de-domestication is hull colour. The wild progenitors of the two cultivated rice species have predominantly black-coloured hulls, as does one of the two U.S. weed biotypes; both cultivated species and one of the US weedy biotypes are characterized by straw-coloured hulls. Using Black hull 4 (Bh4) as a hull colour candidate gene, we examined DNA sequence variation at this locus to study the parallel evolution of hull colour variation in the domesticated and weedy rice system. We find that independent Bh4-coding mutations have arisen in African and Asian rice that are correlated with the straw hull phenotype, suggesting that the same gene is responsible for parallel trait evolution. For the U.S. weeds, Bh4 haplotype sequences support current hypotheses on the phylogenetic relationship between the two biotypes and domesticated Asian rice; straw hull weeds are most similar to indica crops, and black hull weeds are most similar to aus crops. Tests for selection indicate that Asian crops and straw hull weeds deviate from neutrality at this gene, suggesting possible selection on Bh4 during both rice domestication and de-domestication. © 2013 The Authors. Journal of Evolutionary Biology © 2013 European Society For Evolutionary Biology.

Nonlinear evolution of energetic-particles-driven waves in collisionless plasmas

NASA Astrophysics Data System (ADS)

Li, Shuhan; Liu, Jinyuan; Wang, Feng; Shen, Wei; Li, Dong

2018-06-01

A one-dimensional electrostatic collisionless particle-in-cell code has been developed to study the nonlinear interaction between electrostatic waves and energetic particles (EPs). For a single wave, the results are clear and agree well with the existing theories. For coexisting two waves, although the mode nonlinear coupling between two wave fields is ignored, the second-order phase space islands can still exist between first-order islands generated by the two waves. However, the second-order phase islands are not formed by the superposed wave fields and the perturbed motions of EPs induced by the combined effect of two main resonances make these structures in phase space. Owing to these second-order islands, energy can be transferred between waves, even if the overlap of two main resonances never occurs. Depending on the distance between the main resonance islands in velocity space, the second-order island can affect the nonlinear dynamics and saturations of waves.

Island biodiversity conservation needs palaeoecology.

PubMed

Nogué, Sandra; de Nascimento, Lea; Froyd, Cynthia A; Wilmshurst, Janet M; de Boer, Erik J; Coffey, Emily E D; Whittaker, Robert J; Fernández-Palacios, José María; Willis, Kathy J

2017-06-22

The discovery and colonization of islands by humans has invariably resulted in their widespread ecological transformation. The small and isolated populations of many island taxa, and their evolution in the absence of humans and their introduced taxa, mean that they are particularly vulnerable to human activities. Consequently, even the most degraded islands are a focus for restoration, eradication, and monitoring programmes to protect the remaining endemic and/or relict populations. Here, we build a framework that incorporates an assessment of the degree of change from multiple baseline reference periods using long-term ecological data. The use of multiple reference points may provide information on both the variability of natural systems and responses to successive waves of cultural transformation of island ecosystems, involving, for example, the alteration of fire and grazing regimes and the introduction of non-native species. We provide exemplification of how such approaches can provide valuable information for biodiversity conservation managers of island ecosystems.

Origin of the mosaicity in graphene grown on Cu(111)

NASA Astrophysics Data System (ADS)

Nie, Shu; Wofford, Joseph M.; Bartelt, Norman C.; Dubon, Oscar D.; McCarty, Kevin F.

2011-10-01

We use low-energy electron microscopy to investigate how graphene grows on Cu(111). Graphene islands first nucleate at substrate defects such as step bunches and impurities. A considerable fraction of these islands can be rotationally misaligned with the substrate, generating grain boundaries upon interisland impingement. New rotational boundaries are also generated as graphene grows across substrate step bunches. Thus, rougher substrates lead to higher degrees of mosaicity than do flatter substrates. Increasing the growth temperature improves crystallographic alignment. We demonstrate that graphene growth on Cu(111) is surface diffusion limited by comparing simulations of the time evolution of island shapes with experiments. Islands are dendritic with distinct lobes, but unlike the polycrystalline, four-lobed islands observed on (100)-textured Cu foils, each island can be a single crystal. Thus, epitaxial graphene on smooth, clean Cu(111) has fewer structural defects than it does on Cu(100).

Genetic and developmental basis for parallel evolution and its significance for hominoid evolution.

PubMed

Reno, Philip L

2014-01-01

Greater understanding of ape comparative anatomy and evolutionary history has brought a general appreciation that the hominoid radiation is characterized by substantial homoplasy.(1-4) However, little consensus has been reached regarding which features result from repeated evolution. This has important implications for reconstructing ancestral states throughout hominoid evolution, including the nature of the Pan-Homo last common ancestor (LCA). Advances from evolutionary developmental biology (evo-devo) have expanded the diversity of model organisms available for uncovering the morphogenetic mechanisms underlying instances of repeated phenotypic change. Of particular relevance to hominoids are data from adaptive radiations of birds, fish, and even flies demonstrating that parallel phenotypic changes often use similar genetic and developmental mechanisms. The frequent reuse of a limited set of genes and pathways underlying phenotypic homoplasy suggests that the conserved nature of the genetic and developmental architecture of animals can influence evolutionary outcomes. Such biases are particularly likely to be shared by closely related taxa that reside in similar ecological niches and face common selective pressures. Consideration of these developmental and ecological factors provides a strong theoretical justification for the substantial homoplasy observed in the evolution of complex characters and the remarkable parallel similarities that can occur in closely related taxa. Thus, as in other branches of the hominoid radiation, repeated phenotypic evolution within African apes is also a distinct possibility. If so, the availability of complete genomes for each of the hominoid genera makes them another model to explore the genetic basis of repeated evolution. © 2014 Wiley Periodicals, Inc.

Cancer heterogeneity: converting a limitation into a source of biologic information.

PubMed

Rübben, Albert; Araujo, Arturo

2017-09-08

Analysis of spatial and temporal genetic heterogeneity in human cancers has revealed that somatic cancer evolution in most cancers is not a simple linear process composed of a few sequential steps of mutation acquisitions and clonal expansions. Parallel evolution has been observed in many early human cancers resulting in genetic heterogeneity as well as multilineage progression. Moreover, aneuploidy as well as structural chromosomal aberrations seems to be acquired in a non-linear, punctuated mode where most aberrations occur at early stages of somatic cancer evolution. At later stages, the cancer genomes seem to get stabilized and acquire only few additional rearrangements. While parallel evolution suggests positive selection of driver mutations at early stages of somatic cancer evolution, stabilization of structural aberrations at later stages suggests that negative selection takes effect when cancer cells progressively lose their tolerance towards additional mutation acquisition. Mixing of genetically heterogeneous subclones in cancer samples reduces sensitivity of mutation detection. Moreover, driver mutations present only in a fraction of cancer cells are more likely to be mistaken for passenger mutations. Therefore, genetic heterogeneity may be considered a limitation negatively affecting detection sensitivity of driver mutations. On the other hand, identification of subclones and subclone lineages in human cancers may lead to a more profound understanding of the selective forces which shape somatic cancer evolution in human cancers. Identification of parallel evolution by analyzing spatial heterogeneity may hint to driver mutations which might represent additional therapeutic targets besides driver mutations present in a monoclonal state. Likewise, stabilization of cancer genomes which can be identified by analyzing temporal genetic heterogeneity might hint to genes and pathways which have become essential for survival of cancer cell lineages at later stages of cancer evolution. These genes and pathways might also constitute patient specific therapeutic targets.

From Easter Island to coated coronary stents: a remarkable saga.

PubMed

Cantwell, John D

2008-01-01

Easter Island, even though it's in the middle of nowhere, is indeed a piece of the continent, as John Donne alluded to. In addition to contributing rapamycin to the medical field, the island is an example to the whole world of the consequences of affluent lifestyles, tribal wars, and ignorance of ecology. Jared Diamond expressed these thoughts best in his book, "Collapse:" The parallels between Easter Island and the whole modern world are chillingly obvious... All countries on earth today share resources and affect each other just as did Easter's dozen clans. Polynesian Easter Island was as isolated in the Pacific Ocean as the Earth is today in space. People see the collapse of Easter Island 's society as a metaphor; a worst-case scenario, for what may lie ahead for us in our own future. Some veteran Easter Island archaeologists like Claudio Cristina feel that Diamond's views are overly simplistic, commenting that he only spent a week on the island (versus 30 years for Cristina). Predatory Polynesian rats, earthquakes, tsunamis, variations in rainfall, diseases introduced by European sailing ships, could all have contributed to the near-demise of Easter Island. Tribal wars certainly didn't help, nor did slave-raiding parties from Peru. Only the eyes of the moai (Fig. 5) have seen it all, but the statues remain silent, as they have for over 1,000 years.

Evolution of Internet addiction in Greek adolescent students over a two-year period: the impact of parental bonding.

PubMed

Siomos, Konstantinos; Floros, Georgios; Fisoun, Virginia; Evaggelia, Dafouli; Farkonas, Nikiforos; Sergentani, Elena; Lamprou, Maria; Geroukalis, Dimitrios

2012-04-01

We present results from a cross-sectional study of the entire adolescent student population aged 12-18 of the island of Kos and their parents, on Internet abuse, parental bonding and parental online security practices. We also compared the level of over involvement with personal computers of the adolescents to the respective estimates of their parents. Our results indicate that Internet addiction is increased in this population where no preventive attempts were made to combat the phenomenon from the initial survey, 2 years ago. This increase is parallel to an increase in Internet availability. The best predictor variables for Internet and computer addiction were parental bonding variables and not parental security practices. Parents tend to underestimate the level of computer involvement when compared to their own children estimates. Parental safety measures on Internet browsing have only a small preventive role and cannot protect adolescents from Internet addiction. The three online activities most associated with Internet addiction were watching online pornography, online gambling and online gaming. © Springer-Verlag 2012

Archive of sediment data from vibracores collected in 2010 offshore of the Mississippi barrier islands

USGS Publications Warehouse

Kelso, Kyle W.; Flocks, James G.

2015-01-01

Selection of the core site locations was based on geophysical surveys conducted around the islands from 2008 to 2010. The surveys, using acoustic systems to image and interpret the nearsurface stratigraphy, were conducted to investigate the geologic controls on island evolution. This data series serves as an archive of sediment data collected from August to September 2010, offshore of the Mississippi barrier islands. Data products, including descriptive core logs, core photographs, results of sediment grain-size analyses, sample location maps, and geographic information system (GIS) data files with accompanying formal Federal Geographic Data Committee (FDGC) metadata can be downloaded from the data products and downloads page.

Saturated Widths of Magnetic Islands in Tokamak Discharges

NASA Astrophysics Data System (ADS)

Halpern, F.; Pankin, A. Y.

2005-10-01

The new ISLAND module described in reference [1] implements a quasi-linear model to compute the widths of multiple magnetic islands driven by saturated tearing modes in toroidal plasmas of arbitrary aspect ratio and cross sectional shape. The distortion of the island shape caused by the radial variation in the perturbation is computed in the new module. In transport simulations, the enhanced transport caused by the magnetic islands has the effect of flattening the pressure and current density profiles. This self consistent treatment of the magnetic islands alters the development of the plasma profiles. In addition, it is found that islands closer to the magnetic axis influence the evolution of islands further out in the plasma. In order to investigate such phenomena, the ISLAND module is used within the BALDUR predictive modeling code to compute the widths of multiple magnetic islands in tokamak discharges. The interaction between the islands and sawtooth crashes is examined in simulations of DIII-D and JET discharges. The module is used to compute saturated neoclassical tearing mode island widths for multiple modes in ITER. Preliminary results for island widths in ITER are consistent with those presented [2] by Hegna. [1] F.D. Halpern, G. Bateman, A.H. Kritz and A.Y. Pankin, ``The ISLAND Module for Computing Magnetic Island Widths in Tokamaks,'' submitted to J. Plasma Physics (2005). [2] C.C. Hegna, 2002 Fusion Snowmass Meeting.

Genetic adaptations of the plateau zokor in high-elevation burrows.

PubMed

Shao, Yong; Li, Jin-Xiu; Ge, Ri-Li; Zhong, Li; Irwin, David M; Murphy, Robert W; Zhang, Ya-Ping

2015-11-25

The plateau zokor (Myospalax baileyi) spends its entire life underground in sealed burrows. Confronting limited oxygen and high carbon dioxide concentrations, and complete darkness, they epitomize a successful physiological adaptation. Here, we employ transcriptome sequencing to explore the genetic underpinnings of their adaptations to this unique habitat. Compared to Rattus norvegicus, genes belonging to GO categories related to energy metabolism (e.g. mitochondrion and fatty acid beta-oxidation) underwent accelerated evolution in the plateau zokor. Furthermore, the numbers of positively selected genes were significantly enriched in the gene categories involved in ATPase activity, blood vessel development and respiratory gaseous exchange, functional categories that are relevant to adaptation to high altitudes. Among the 787 genes with evidence of parallel evolution, and thus identified as candidate genes, several GO categories (e.g. response to hypoxia, oxygen homeostasis and erythrocyte homeostasis) are significantly enriched, are two genes, EPAS1 and AJUBA, involved in the response to hypoxia, where the parallel evolved sites are at positions that are highly conserved in sequence alignments from multiple species. Thus, accelerated evolution of GO categories, positive selection and parallel evolution at the molecular level provide evidences to parse the genetic adaptations of the plateau zokor for living in high-elevation burrows.

Uav Application in Coastal Environment, Example of the Oleron Island for Dunes and Dikes Survey

NASA Astrophysics Data System (ADS)

Guillot, B.; Pouget, F.

2015-08-01

The recent evolutions in civil UAV ease of use led the University of La Rochelle to conduct an UAV program around its own potential costal application. An application program involving La Rochelle University and the District of Oleron Island began in January 2015 and lasted through July of 2015. The aims were to choose 9 study areas and survey them during the winter season. The studies concerned surveying the dikes and coastal sand dunes of Oleron Island. During each flight, an action sport camera fixed on the UAV's brushless gimbal took a series of 150 pictures. After processing the photographs and using a 3D reconstruction plugin via Photoscan, we were able to export high-resolution ortho-imagery, DSM and 3D models. After applying GIS treatment to these images, volumetric evolutions between flights were revealed through a DDVM (Difference of Digital volumetric Model), in order to study sand movements on coastal sand dunes.

Evolution of graphene islands growing on Cu foils

NASA Astrophysics Data System (ADS)

Wofford, Joseph; Nie, Shu; Bartelt, Norman; McCarty, Kevin; Dubon, Oscar

2011-03-01

Using low-energy electron microscopy we investigate, in real time, the growth of graphene monolayers on Cu foils. Graphene islands evolve from an initially compact form into an increasingly ramified, four-lobed shape, reflecting the symmetry of the (100)-textured Cu surface. Diffraction analysis reveals that each lobe is an individual graphene domain, differentiated by a rotation about the film normal, making the islands polycrystalline. An inspection of the morphological evolution of the graphene lobes shows the growth fronts posses an angularly dependent velocity, which is consistent with a growth mode dominated by edge kinetics. The fast growth direction of each lobe tends to align with the 001 in-plane directions of the Cu surface but not with a high symmetry direction of the graphene lattice. Finally, the implications of this unexpected growth mechanism on the formation of high-quality graphene films on Cu foils are evaluated. Supported by BES/USDOE under contracts #DE-AC04-94AL85000 and #DE-AC02-05CH11231.

Linguistics: evolution and language change.

PubMed

Bowern, Claire

2015-01-05

Linguists have long identified sound changes that occur in parallel. Now novel research shows how Bayesian modeling can capture complex concerted changes, revealing how evolution of sounds proceeds. Copyright © 2015 Elsevier Ltd. All rights reserved.

THE CHANGING PACE OF INSULAR LIFE: 5000 YEARS OF MICROEVOLUTION IN THE ORKNEY VOLE (MICROTUS ARVALIS ORCADENSIS)

PubMed Central

Cucchi, Thomas; Barnett, Ross; Martínková, Natália; Renaud, Sabrina; Renvoisé, Elodie; Evin, Allowen; Sheridan, Alison; Mainland, Ingrid; Wickham‐Jones, Caroline; Tougard, Christelle; Quéré, Jean Pierre; Pascal, Michel; Pascal, Marine; Heckel, Gerald; O'Higgins, Paul; Searle, Jeremy B.; Dobney, Keith M.

2014-01-01

Island evolution may be expected to involve fast initial morphological divergence followed by stasis. We tested this model using the dental phenotype of modern and ancient common voles (Microtus arvalis), introduced onto the Orkney archipelago (Scotland) from continental Europe some 5000 years ago. First, we investigated phenotypic divergence of Orkney and continental European populations and assessed climatic influences. Second, phenotypic differentiation among Orkney populations was tested against geography, time, and neutral genetic patterns. Finally, we examined evolutionary change along a time series for the Orkney Mainland. Molar gigantism and anterior‐lobe hypertrophy evolved rapidly in Orkney voles following introduction, without any transitional forms detected. Founder events and adaptation appear to explain this initial rapid evolution. Idiosyncrasy in dental features among different island populations of Orkney voles is also likely the result of local founder events following Neolithic translocation around the archipelago. However, against our initial expectations, a second marked phenotypic shift occurred between the 4th and 12th centuries AD, associated with increased pastoral farming and introduction of competitors (mice and rats) and terrestrial predators (foxes and cats). These results indicate that human agency can generate a more complex pattern of morphological evolution than might be expected in island rodents. PMID:24957579

Recurrent specialization on a toxic fruit in an island Drosophila population

PubMed Central

Yassin, Amir; Debat, Vincent; Bastide, Héloïse; Gidaszewski, Nelly; David, Jean R.; Pool, John E.

2016-01-01

Recurrent specialization on similar host plants offers a unique opportunity to unravel the evolutionary and genetic mechanisms underlying dietary shifts. Recent studies have focused on ecological races belonging to the same species, but it is hard in many cases to untangle the role of adaptive introgression versus distinct mutations in facilitating recurrent evolution. We discovered on the island of Mayotte a population of the generalist fly Drosophila yakuba that is strictly associated with noni (Morinda citrifolia). This case strongly resembles Drosophila sechellia, a genetically isolated insular relative of D. yakuba whose intensely studied specialization on toxic noni fruits has always been considered a unique event in insect evolution. Experiments revealed that unlike mainland D. yakuba strains, Mayotte flies showed strong olfactory attraction and significant toxin tolerance to noni. Island females strongly discriminated against mainland males, suggesting that dietary adaptation has been accompanied by partial reproductive isolation. Population genomic analysis indicated a recent colonization (∼29 kya), at a time when year-round noni fruits may have presented a predictable resource on the small island, with ongoing migration after colonization. This relatively recent time scale allowed us to search for putatively adaptive loci based on genetic variation. Strong signals of genetic differentiation were found for several detoxification genes, including a major toxin tolerance locus in D. sechellia. Our results suggest that recurrent evolution on a toxic resource can involve similar historical events and common genetic bases, and they establish an important genetic system for the study of early stages of ecological specialization and speciation. PMID:27044093

Environmental margin and island evolution in Middle Eastern populations of the Egyptian fruit bat.

PubMed

Hulva, P; Marešová, T; Dundarova, H; Bilgin, R; Benda, P; Bartonička, T; Horáček, I

2012-12-01

Here, we present a study of the population genetic architecture and microevolution of the Egyptian fruit bat (Rousettus aegyptiacus) at the environmental margins in the Middle East using mitochondrial sequences and nuclear microsatellites. In contrast to the rather homogenous population structure typical of cave-dwelling bats in climax tropical ecosystems, a relatively pronounced isolation by distance and population diversification was observed. The evolution of this pattern could be ascribed to the complicated demographic history at higher latitudes related to the range margin fragmentation and complex geomorphology of the studied area. Lineages from East Africa and Arabia show divergent positions. Within the northwestern unit, the most marked pattern of the microsatellite data set is connected with insularity, as demonstrated by the separate status of populations from Saharan oases and Cyprus. These demes also exhibit a reduction in genetic variability, which is presumably connected with founder effects, drift and other potential factors related to island evolution as site-specific selection. Genetic clustering indicates a semipermeability of the desert barriers in the Sahara and Arabian Peninsula and a corridor role of the Nile Valley. The results emphasize the role of the island environment in restricting the gene flow in megabats, which is also corroborated by biogeographic patterns within the family, and suggests the possibility of nascent island speciation on Cyprus. Demographic analyses suggest that the colonization of the region was connected to the spread of agricultural plants; therefore, the peripatric processes described above might be because of or strengthened by anthropogenic changes in the environment. © 2012 Blackwell Publishing Ltd.

The systematics and independent evolution of cave ecomorphology in distantly related clades of Bent-toed Geckos (Genus Cyrtodactylus Gray, 1827) from the Mekong Delta and islands in the Gulf of Thailand.

PubMed

Grismer, L Lee; Wood, P L Jr; Tri, Ngo Van; Murdoch, Matthew L

2015-06-26

An integrative taxonomic analysis of the distantly related Cyrtodactylus condorensis and intermedius species complexes of the Mekong Delta revealed that C. paradoxus is a junior synonym of C. condorensis and that C. thochuensis is a junior synonym of C. leegrismeri. Additionally, the analysis revealed that a cave-dwelling ecomorpholgy has evolved independently early on in the evolution of both complexes (represented by C. hontreensis in the intermedius complex and C. grismeri and C. eisenmani in the condorensis complex) and cave ecomorphs exist in sympatry-but not syntopy-with general scansorial ecomorphs. Multiple, recent, cyclical, glacioeustatic driven changes in sea levels across the Sunda Shelf are hypothesized to account for the evolution and distribution of the widely separated, conspecific insular populations of C. condorensis and C. leegrismeri. The independent evolution of cave ecomorphology is proposed to have been driven by competition avoidance. Habitat islands across the Mekong Delta are an important source of endemism and in need of protection.

Modeling Catastrophic Barrier Island Dynamics

NASA Astrophysics Data System (ADS)

Whitley, J. W.; McNamara, D.

2012-12-01

Barrier islands, thin strips of sand lying parallel to the mainland coastline, along the U.S. Atlantic and Gulf Coasts appear to have maintained their form for thousands of years in the face of rising sea level. The mechanisms that allow barrier islands to remain robust are transport of sediment from the ocean side of barriers to the top and backside during storms, termed island overwash, and the growth and alongshore propagation of tidal deltas near barrier island inlets. Dynamically these processes provide the necessary feedbacks to maintain a barrier island in an attractor that withstands rising sea level within a phase space of barrier island geometrical characteristics. Current barrier island configurations along the Atlantic and Gulf coasts exist among a wide range of storm climate and underlying geologic conditions and therefore the environment that forces overwash and tidal delta dynamics varies considerably. It has been suggested that barrier islands in certain locations such as those between Avon and Buxton (losing 76% of island width since 1852) and Chandeleur islands (losing 85% of its surface area since 2005) along the Atlantic and Gulf coasts, respectively, may be subject to a catastrophic shift in barrier island attractor states - more numerous inlets cutting barriers in some locations and the complete disappearance of barrier islands in other locations. In contrast to common models for barrier islands that neglect storm dynamics and often only consider cross-shore response, we use an alongshore extended model for barrier island dynamics including beach erosion, island overwash and inlet cutting during storms, and beach accretion, tidal delta growth and dune and vegetation growth between storms to explore the response of barrier islands to a wide range of environmental forcing. Results will be presented that show how barrier island attractor states are altered with variations in the rate of sea level rise, storminess, and underlying geology. We will also investigate the conditions necessary for a barrier island attractor similar to those found along the Atlantic and Gulf coasts to become unstable.

Convergent, Parallel and Correlated Evolution of Trophic Morphologies in the Subfamily Schizothoracinae from the Qinghai-Tibetan Plateau

PubMed Central

Qi, Delin; Chao, Yan; Guo, Songchang; Zhao, Lanying; Li, Taiping; Wei, Fulei; Zhao, Xinquan

2012-01-01

Schizothoracine fishes distributed in the water system of the Qinghai-Tibetan plateau (QTP) and adjacent areas are characterized by being highly adaptive to the cold and hypoxic environment of the plateau, as well as by a high degree of diversity in trophic morphology due to resource polymorphisms. Although convergent and parallel evolution are prevalent in the organisms of the QTP, it remains unknown whether similar evolutionary patterns have occurred in the schizothoracine fishes. Here, we constructed for the first time a tentative molecular phylogeny of the schizothoracine fishes based on the complete sequences of the cytochrome b gene. We employed this molecular phylogenetic framework to examine the evolution of trophic morphologies. We used Pagel's maximum likelihood method to estimate the evolutionary associations of trophic morphologies and food resource use. Our results showed that the molecular and published morphological phylogenies of Schizothoracinae are partially incongruent with respect to some intergeneric relationships. The phylogenetic results revealed that four character states of five trophic morphologies and of food resource use evolved at least twice during the diversification of the subfamily. State transitions are the result of evolutionary patterns including either convergence or parallelism or both. Furthermore, our analyses indicate that some characters of trophic morphologies in the Schizothoracinae have undergone correlated evolution, which are somewhat correlated with different food resource uses. Collectively, our results reveal new examples of convergent and parallel evolution in the organisms of the QTP. The adaptation to different trophic niches through the modification of trophic morphologies and feeding behaviour as found in the schizothoracine fishes may account for the formation and maintenance of the high degree of diversity and radiations in fish communities endemic to QTP. PMID:22470515

Spontaneous healing and growth of locked magnetic island chains in toroidal plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fitzpatrick, R.; Waelbroeck, F. L.

2012-11-15

Recent experiments have demonstrated that locked magnetic island chains in stellarator plasmas spontaneously heal under certain conditions, and spontaneously grow under others. A formalism initially developed to study magnetic island dynamics in tokamak plasmas is employed to investigate this phenomenon. It is found that island healing/growth transitions can be caused either by a breakdown in torque balance in the vicinity of the island chain, or by an imbalance between the various terms in the island width evolution equation. The scaling of the healing/growth thresholds with the standard dimensionless plasma parameters {beta}, {nu}{sub *}, and {rho}{sub *} is determined. In accordancemore » with the experimental data, it is found that island healing generally occurs at high {beta} and low {nu}{sub *}, and island growth at low {beta} and high {nu}{sub *}. In further agreement, it is found that island healing is accompanied an ion poloidal velocity shift in the electron diamagnetic direction, and island growth by a velocity shift in the ion diamagnetic direction. Finally, it is found that there is considerable hysteresis in the healing/growth cycle, as is also seen experimentally.« less

Oceanic island biogeography through the lens of the general dynamic model: assessment and prospect.

PubMed

Borregaard, Michael K; Amorim, Isabel R; Borges, Paulo A V; Cabral, Juliano S; Fernández-Palacios, José M; Field, Richard; Heaney, Lawrence R; Kreft, Holger; Matthews, Thomas J; Olesen, Jens M; Price, Jonathan; Rigal, Francois; Steinbauer, Manuel J; Triantis, Konstantinos A; Valente, Luis; Weigelt, Patrick; Whittaker, Robert J

2017-05-01

The general dynamic model of oceanic island biogeography (GDM) has added a new dimension to theoretical island biogeography in recognizing that geological processes are key drivers of the evolutionary processes of diversification and extinction within remote islands. It provides a dynamic and essentially non-equilibrium framework generating novel predictions for emergent diversity properties of oceanic islands and archipelagos. Its publication in 2008 coincided with, and spurred on, renewed attention to the dynamics of remote islands. We review progress, both in testing the GDM's predictions and in developing and enhancing ecological-evolutionary understanding of oceanic island systems through the lens of the GDM. In particular, we focus on four main themes: (i) macroecological tests using a space-for-time rationale; (ii) extensions of theory to islands following different patterns of ontogeny; (iii) the implications of GDM dynamics for lineage diversification and trait evolution; and (iv) the potential for downscaling GDM dynamics to local-scale ecological patterns and processes within islands. We also consider the implications of the GDM for understanding patterns of non-native species diversity. We demonstrate the vitality of the field of island biogeography by identifying a range of potentially productive lines for future research. © 2016 Cambridge Philosophical Society.

Rapid convergent evolution in wild crickets.

PubMed

Pascoal, Sonia; Cezard, Timothee; Eik-Nes, Aasta; Gharbi, Karim; Majewska, Jagoda; Payne, Elizabeth; Ritchie, Michael G; Zuk, Marlene; Bailey, Nathan W

2014-06-16

The earliest stages of convergent evolution are difficult to observe in the wild, limiting our understanding of the incipient genomic architecture underlying convergent phenotypes. To address this, we capitalized on a novel trait, flatwing, that arose and proliferated at the start of the 21st century in a population of field crickets (Teleogryllus oceanicus) on the Hawaiian island of Kauai. Flatwing erases sound-producing structures on male forewings. Mutant males cannot sing to attract females, but they are protected from fatal attack by an acoustically orienting parasitoid fly (Ormia ochracea). Two years later, the silent morph appeared on the neighboring island of Oahu. We tested two hypotheses for the evolutionary origin of flatwings in Hawaii: (1) that the silent morph originated on Kauai and subsequently introgressed into Oahu and (2) that flatwing originated independently on each island. Morphometric analysis of male wings revealed that Kauai flatwings almost completely lack typical derived structures, whereas Oahu flatwings retain noticeably more wild-type wing venation. Using standard genetic crosses, we confirmed that the mutation segregates as a single-locus, sex-linked Mendelian trait on both islands. However, genome-wide scans using RAD-seq recovered almost completely distinct markers linked with flatwing on each island. The patterns of allelic association with flatwing on either island reveal different genomic architectures consistent with the timing of two mutational events on the X chromosome. Divergent wing morphologies linked to different loci thus cause identical behavioral outcomes--silence--illustrating the power of selection to rapidly shape convergent adaptations from distinct genomic starting points. Copyright © 2014 Elsevier Ltd. All rights reserved.

Is heterostyly rare on oceanic islands?

PubMed Central

Watanabe, Kenta; Sugawara, Takashi

2015-01-01

Heterostyly has been considered rare or absent on oceanic islands. However, there has been no comprehensive review on this issue. Is heterostyly truly rare on oceanic islands? What makes heterostyly rare on such islands? To answer these questions, we review the reproductive studies on heterostyly on oceanic islands, with special emphasis on the heterostylous genus Psychotria in the Pacific Ocean as a model system. Overall, not many reproductive studies have been performed on heterostylous species on oceanic islands. In Hawaiian Psychotria, all 11 species are thought to have evolved dioecy from distyly. In the West Pacific, three species on the oceanic Bonin and Lanyu Islands are distylous (Psychotria homalosperma, P. boninensis and P. cephalophora), whereas three species on the continental Ryukyu Islands show various breeding systems, such as distyly (P. serpens), dioecy (P. rubra) and monoecy (P. manillensis). On some other Pacific oceanic islands, possibilities of monomorphy have been reported. For many Psychotria species, breeding systems are unknown, although recent studies indicate that heterostylous species may occur on some oceanic islands. A shift from heterostyly to other sexual systems may occur on some oceanic islands. This tendency may also contribute to the rarity of heterostyly, in addition to the difficulty in colonization/autochthonous evolution of heterostylous species on oceanic islands. Further investigation of reproductive systems of Psychotria on oceanic islands using robust phylogenetic frameworks would provide new insights into plant reproduction on oceanic islands. PMID:26199401

The tectonic evolution of the Madrean Archipelago and its impact on the geoecology of the Sky Islands

Treesearch

David Coblentz

2005-01-01

While the unique geographic location of the Sky Islands is well recognized as a primary factor for the elevated biodiversity of the region, its unique tectonic history is often overlooked. The mixing of tectonic environments is an important supplement to the mixing of flora and faunal regimes in contributing to the biodiversity of the Madrean Archipelago. The Sky...

GenCade Application at Onslow Bay, North Carolina

DTIC Science & Technology

2012-08-01

reverse transport direction. In addition, tropical and extratropical storms can impact the shore from the southeast or southwest, depending on storm ...The influence of inlet modifications, geologic framework, and storms on the recent evolution of Masonboro Island, NC. Master of Science thesis...Wilmington (USACE). 2000. Special Report: Impact of Federal Navigation and Storm Damage Reduction Projects on Masonboro Island, NC. U.S. Army Corps of

Restored river corridors: first results on the effects of flow variability on vegetation cuttings survival rate and related root architecture

NASA Astrophysics Data System (ADS)

Pasquale, N.; Perona, P.; Jiang, Z.; Burlando, P.

2009-04-01

Understanding and predicting the evolution of river alluvial bed forms toward a vegetated or a non-vegetated morphology have important implications for restored river corridors and the related ecosystem functioning (see also Schäppi et al, this session). Vegetation recruitment and growth on non-cohesive material of river corridors, such as gravel bars and islands of braided river, depend on the ability of roots to develop and anchor efficiently such to resist against flow erosion. In this work, we study the interannual morphological evolution of a gravel bar island, the survival rate and the growth of a number of plots with different density and orientation of transplanted cuttings (Salix Alba), the space and time dynamics of which depend on erosion and deposition processes due to floods. Our purpose is to identify island locations where the hydrodynamic conditions are more suitable for plants germination, growth and survival in relation to the river hydrograph statistics. This information is a first step to build a stochastic model able to predict the future evolution and progress of the restoration action of the investigated river reach. We focus at the main island of River Thur at Niederneunforn (Canton Thurgau, Switzerland), the restoration success of which is investigated from a mechanistic viewpoint in the research project "REstored CORridor Dynamics" (www.record.ethz.ch). Accordingly, we analyze two recent Digital Elevation Models (1 year difference), which were first corrected to account for the river bathymetry, and then we compare them in order to extract relevant interannual morphological changes. Using a two dimensional numerical hydrodynamic model we simulate several flow conditions ranging from the minimum recorded flow up to the one that completely inundates the island. Hence, we build inundation maps of the island that we associate to the frequency and the submergence duration of every area. We then correlate such results to the observed survival rate and the root characteristics of a sample of 1-year old transplanted cuttings. Despite limited in number, the investigated sample suggests that roots are shot from different points of the cuttings, which seem to reflect their location on the island and the direction of major resistance to flow erosion, also in agreement with the inundation maps.

Evolution of Subaerial Coastal Fluvial Delta Island Topography into Multiple Stable States Under Influence of Vegetation and Stochastic Hydrology

NASA Astrophysics Data System (ADS)

Moffett, K. B.; Smith, B. C.; O'Connor, M.; Mohrig, D. C.

2014-12-01

Coastal fluvial delta morphodynamics are prominently controlled by external fluvial sediment and water supplies; however, internal sediment-water-vegetation feedbacks are now being proposed as potentially equally significant in organizing and maintaining the progradation and aggradation of such systems. The time scales of fluvial and climate influences on these feedbacks, and of their responses, are also open questions. Historical remote sensing study of the Wax Lake Delta model system (Louisiana, USA) revealed trends in the evolution of the subaerial island surfaces from a non-systematic arrangement of elevations to a discrete set of levees and intra-island platforms with distinct vegetation types, designated as high marsh, low marsh, and mudflat habitat. We propose that this elevation zonation is consistent with multiple stable state theory, e.g. as applied to tidal salt marsh systems but not previously to deltas. According to zonally-distributed sediment core analyses, differentiation of island elevations was not due to organic matter accumulation as in salt marshes, but rather by differential mineral sediment accumulation with some organic contributions. Mineral sediment accumulation rates suggested that elevation growth was accelerating or holding steady over time, at least to date in this young delta, in contrast to theory suggesting rates should slow as elevation increases above mean water level. Hydrological analysis of island flooding suggested a prominent role of stochastic local storm events in raising island water levels and supplying mineral sediment to the subaerial island surfaces at short time scales; over longer time scales, the relative influences of local storms and inland/regional floods on the coupled sediment-water-vegetation system of the subaerial delta island surfaces remain the subject of ongoing study. These results help provide an empirical foundation for the next generation of coupled sediment-water-vegetation modeling and theory.

Intersectional gene flow between insular endemics of Ilex (Aquifoliaceae) on the Bonin Islands and the Ryukyu Islands.

PubMed

Setoguchi, H; Watanabe, I

2000-06-01

Hybridization and introgression play important roles in plant evolution, and their occurrence on the oceanic islands provides good examples of plant speciation and diversification. Restriction fragment length polymorphisms (RFLPs) and trnL (UAA) 3'exon-trnF (GAA) intergenic spacer (IGS) sequences of chloroplast DNA (cpDNA), and the sequences of internal transcribed spacer (ITS) of nuclear ribosomal DNA were examined to investigate the occurrence of gene transfer in Ilex species on the Bonin Islands and the Ryukyu Islands in Japan. A gene phylogeny for the plastid genome is in agreement with the morphologically based taxonomy, whereas the nuclear genome phylogeny clusters putatively unrelated endemics both on the Bonin and the Ryukyu Islands. Intersectional hybridization and nuclear gene flow were independently observed in insular endemics of Ilex on both sets of islands without evidence of plastid introgression. Gene flow observed in these island systems can be explained by ecological features of insular endemics, i.e., limits of distribution range or sympatric distribution in a small land area.

Experimental evolution reveals hidden diversity in evolutionary pathways

PubMed Central

Lind, Peter A; Farr, Andrew D; Rainey, Paul B

2015-01-01

Replicate populations of natural and experimental organisms often show evidence of parallel genetic evolution, but the causes are unclear. The wrinkly spreader morph of Pseudomonas fluorescens arises repeatedly during experimental evolution. The mutational causes reside exclusively within three pathways. By eliminating these, 13 new mutational pathways were discovered with the newly arising WS types having fitnesses similar to those arising from the commonly passaged routes. Our findings show that parallel genetic evolution is strongly biased by constraints and we reveal the genetic bases. From such knowledge, and in instances where new phenotypes arise via gene activation, we suggest a set of principles: evolution proceeds firstly via pathways subject to negative regulation, then via promoter mutations and gene fusions, and finally via activation by intragenic gain-of-function mutations. These principles inform evolutionary forecasting and have relevance to interpreting the diverse array of mutations associated with clinically identical instances of disease in humans. DOI: http://dx.doi.org/10.7554/eLife.07074.001 PMID:25806684

A Sane Island Surrounded

ERIC Educational Resources Information Center

Roberts, Jack

2008-01-01

A combination of commercialism and professionalism has become a powerful force undermining the wholesome nature of amateur athletic programs in local secondary schools of America. The growth in popularity of professional sports in America parallels the introduction of television. The pervasive influence of television on American life has driven…

7 CFR 319.56-21 - Okra from certain countries.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., Rhode Island, South Dakota, Utah, Vermont, Washington, West Virginia, Wisconsin, Wyoming, the District...) Importations into areas south of the 38th parallel that are not pink bollworm generally infested or suppressive..., Arkansas, Florida, Georgia, Louisiana, Mississippi, Nevada, North Carolina, South Carolina, Tennessee, or...

7 CFR 319.56-21 - Okra from certain countries.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., New Hampshire, New Jersey, New York, North Dakota, Ohio, Oregon, Pennsylvania, Rhode Island, South...) Importations into areas south of the 38th parallel that are not pink bollworm generally infested or suppressive..., Arkansas, Florida, Georgia, Louisiana, Mississippi, Nevada, North Carolina, South Carolina, Tennessee, or...

Torres strait islanders and Australian nationhood: Some educational perspectives

NASA Astrophysics Data System (ADS)

Williamson, Alan

1992-01-01

This article analyses the role of education in incorporating Australia's Melanesian minority, the Torres Strait Islanders, into the Australian nation. The analysis begins with the introduction of Queensland government schooling into Torres Strait in 1892, which fostered expectations of Queensland citizenship and employment opportunities available to other races in the economy of the Strait. From 1904 to the outbreak of world war II in the Pacific in 1942 these early directions were altered by educational policies which initially sought to train Islanders for a life in the Islands as a "race apart" from the rest of Australia. Subsequent syllabus reforms, paralleling but not equalling regular schooling offered in Queensland, did not meet Islanders' aspirations for "proper schooling" and the jobs they expected would flow from it. Following world war II, regulations confining Islanders to the Strait were relaxed and many migrated to the Queensland mainland in search of better jobs, better pay, and better education for their children. Those who remained in the Islands received an education which, by 1985, had been brought up to the mainland standard. Yet, neither group's educational aspirations were satisfied despite initiatives and financial incentives of the Commonwealth government aimed at keeping Islander children at school. The article concludes that the way ahead for Islanders in staking out their educational future in the Australian nation on a basis of equality with other Australians lies in educational developments in the Islands themselves, where Islanders are playing an active role in developing, managing, and guiding schooling in directions which recognise their identity and their citizenship aspirations.

Observation of energetic electron confinement in a largely stochastic reversed-field pinch plasma

NASA Astrophysics Data System (ADS)

Clayton, D. J.; Chapman, B. E.; O'Connell, R.; Almagri, A. F.; Burke, D. R.; Forest, C. B.; Goetz, J. A.; Kaufman, M. C.; Bonomo, F.; Franz, P.; Gobbin, M.; Piovesan, P.

2010-01-01

Runaway electrons with energies >100 keV are observed with the appearance of an m =1 magnetic island in the core of otherwise stochastic Madison Symmetric Torus [Dexter et al., Fusion Technol. 19, 131 (1991)] reversed-field-pinch plasmas. The island is associated with the innermost resonant tearing mode, which is usually the largest in the m =1 spectrum. The island appears over a range of mode spectra, from those with a weakly dominant mode to those, referred to as quasi single helicity, with a strongly dominant mode. In a stochastic field, the rate of electron loss increases with electron parallel velocity. Hence, high-energy electrons imply a region of reduced stochasticity. The global energy confinement time is about the same as in plasmas without high-energy electrons or an island in the core. Hence, the region of reduced stochasticity must be localized. Within a numerical reconstruction of the magnetic field topology, high-energy electrons are substantially better confined inside the island, relative to the external region. Therefore, it is deduced that the island provides a region of reduced stochasticity and that the high-energy electrons are generated and well confined within this region.

The tad locus: postcards from the widespread colonization island.

PubMed

Tomich, Mladen; Planet, Paul J; Figurski, David H

2007-05-01

The Tad (tight adherence) macromolecular transport system, which is present in many bacterial and archaeal species, represents an ancient and major new subtype of type II secretion. The tad genes are present on a genomic island named the widespread colonization island (WCI), and encode the machinery that is required for the assembly of adhesive Flp (fimbrial low-molecular-weight protein) pili. The tad genes are essential for biofilm formation, colonization and pathogenesis in the genera Aggregatibacter (Actinobacillus), Haemophilus, Pasteurella, Pseudomonas, Yersinia, Caulobacter and perhaps others. Here we review the structure, function and evolution of the Tad secretion system.

Mode locking and island suppression by resonant magnetic perturbations in Rutherford regime

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Wenlong; Zhu, Ping, E-mail: pzhu@ustc.edu.cn

We demonstrate in theory that tearing mode locking and magnetic island suppression by resonant magnetic perturbations (RMPs) can correspond to different states of a same dynamic system governed by the torque balance and the nonlinear island evolution in the Rutherford regime. In particular, mode locking corresponds to the exact steady state of this system. A new exact analytic solution has been obtained for such a steady state, which quantifies the dependence of the locked mode island width on RMP amplitude in different plasma regimes. Furthermore, two different branches of mode locking have been revealed with the new analytic solution andmore » the branch with suppressed island width turns out to be unstable in general. On the other hand, the system also admits stable states of island suppression achieved through the RMP modulation of tearing mode rotational frequency. When the RMP amplitude is above a certain threshold, the island suppression is transient until the tearing mode eventually gets locked. When the RMP amplitude is below the mode locking threshold, the island can be suppressed in a steady state on time-average, along with transient oscillations in rotational frequency and island width due to the absence of mode locking.« less

In Planta Recapitulation of Isoprene Synthase Evolution from Ocimene Synthases.

PubMed

Li, Mingai; Xu, Jia; Algarra Alarcon, Alberto; Carlin, Silvia; Barbaro, Enrico; Cappellin, Luca; Velikova, Violeta; Vrhovsek, Urska; Loreto, Francesco; Varotto, Claudio

2017-10-01

Isoprene is the most abundant biogenic volatile hydrocarbon compound naturally emitted by plants and plays a major role in atmospheric chemistry. It has been proposed that isoprene synthases (IspS) may readily evolve from other terpene synthases, but this hypothesis has not been experimentally investigated. We isolated and functionally validated in Arabidopsis the first isoprene synthase gene, AdoIspS, from a monocotyledonous species (Arundo donax L., Poaceae). Phylogenetic reconstruction indicates that AdoIspS and dicots isoprene synthases most likely originated by parallel evolution from TPS-b monoterpene synthases. Site-directed mutagenesis demonstrated invivo the functional and evolutionary relevance of the residues considered diagnostic for IspS function. One of these positions was identified by saturating mutagenesis as a major determinant of substrate specificity in AdoIspS able to cause invivo a dramatic change in total volatile emission from hemi- to monoterpenes and supporting evolution of isoprene synthases from ocimene synthases. The mechanism responsible for IspS neofunctionalization by active site size modulation by a single amino acid mutation demonstrated in this study might be general, as the very same amino acidic position is implicated in the parallel evolution of different short-chain terpene synthases from both angiosperms and gymnosperms. Based on these results, we present a model reconciling in a unified conceptual framework the apparently contrasting patterns previously observed for isoprene synthase evolution in plants. These results indicate that parallel evolution may be driven by relatively simple biophysical constraints, and illustrate the intimate molecular evolutionary links between the structural and functional bases of traits with global relevance. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Modelling of Bouillante geothermal field (Guadeloupe, French West Indies)

NASA Astrophysics Data System (ADS)

Lakhssassi, Morad; Lopez, Simon; Calcagno, Philippe; Bouchot, Vincent

2010-05-01

The French islands of West Indies are experiencing rapid population growth. There is a consequent rise in energy demand with a high dependence on oil. In this context, and given their volcanic origin, the development of geothermal high energy in these islands is economically and environmentally interesting. Since the commissioning of the second production unit of the plant of Bouillante in 2005, geothermal energy provides 6 to 8% of electricity consumption energy of the Guadeloupe island. Yet, the geothermal fluid withdrawal was tripled which induced an increase in the quantity of separated brines which are cooled and mixed with sea water before disposal to the sea. It also caused a change in the Bouillante reservoir behavior and well head pressures evolution with a quick and steady pressure drop. Consequently, to optimize the exploitation of the geothermal resource, there was need to better characterize the reservoir, predict pressures evolution and plan reinjection of the separated brines. With this aim in view, available data were gathered to build a geological model integrating both regional and reservoir scale data. In parallel, a 3D hydrodynamic model using the computer code TOUGH 2 is developed to study and predict the behavior of pressure and temperature of Bouillante geothermal field during its exploitation and evaluate the contribution of reinjection to exploitation strategy. Both models should ultimately be linked. The hydrodynamic model is centered on neighboring wells BO-4, BO-5 and BO-6 which are the three producing wells at the moment. The old producing well BO-2 is now used to monitor pressure evolutions at the top of the reservoir. As a first step, model parameters were fitted to reproduce the pressure interference between the three wells recorded between July 2002 and April 2003 when well BO-5 was the only producing well. The model reproduces the hydrodynamic properties of the reservoir via the MINC method (Multiple INteracting Continua). (Pruess, 1992) which generalizes the "dual porosity" model (Warren and Root, 1963). The reservoir is conceptually decomposed into a "fracture" medium and a "matrix" one, each characterized by specific properties such as porosity, permeability and pore compressibility. Both media communicate with the possibility for the flow of matter or heat between fracture and matrix and between different fractures, possibly taking also into account the flow between matrix elements ("dual permeability"). Simulations were fitted to data both manually and automatically. Manual fit of parameters allowed the physical understanding of the influence of each parameter on the pressure curves. Yet, given the multitude of parameters and the large number of simulations to run, we also performed an automatic fit using optimization algorithms from the scipy optimization module. The resulting curves satisfactorily reproduce the measurement curves, especially the rapid pressure transients characterizing fractured media. The next step is to couple the hydrodynamic model to the 3D geological model incorporating information on the geothermal reservoir in terms of fracturation and the correlated distribution of petrophysical parameters…

Bioclimatic niches are conserved and unrelated to pollination syndromes in Antillean Gesneriaceae

PubMed Central

Faure, Julie; Ginzbarg, Steven; Clark, John; Joly, Simon

2017-01-01

The study of the evolution of abiotic niches can be informative regarding the speciation drivers in a given group. Yet, two factors that could potentially affect niche evolution have seldom been addressed concomitantly, which are biotic interactions and geographical isolation. In this study, we used as a model group the Antillean plant genera Gesneria and Rhytidophyllum (Gesneriaceae) to evaluate the effect of pollinators and geographical isolation on the bioclimatic niche. These genera possess species characterized by interspecific geographical isolation in different islands and are pollinated by different pollinators. Some species are pollinated by hummingbirds, other by bats, while some are more generalists and are pollinated by pollinators from both functional groups. After describing the bioclimatic niches of plant species, we measured niche overlap for species pairs and we fitted Brownian motion and Ornstein–Uhlenbeck (OU) evolution models with multiple evolutionary regimes to test for an effect of pollination strategy or geographical isolation on bioclimatic niche evolution of these plants. The analysis of niche overlap between plant species, which could not be corrected for phylogenetic relationships, showed that it was significantly influenced by pollination mode and island distribution. By contrast, the best fitting evolutionary model on niche optima and tolerance was always an OU model with a unique selective regime, suggesting that neither pollination strategy nor island isolation had an important effect on bioclimatic niches at a macroevolutionary scale. Instead, we conclude that bioclimatic niches of Antillean Gesneriaceae evolved under phylogenetic conservatism and hypothesize that this macroevolutionary pattern could result from adaptation to temporally variable climates in the Antilles. PMID:29291050

Fishing down the largest coral reef fish species.

PubMed

Fenner, Douglas

2014-07-15

Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism. Copyright © 2014 Elsevier Ltd. All rights reserved.

Pressure driven currents near magnetic islands in 3D MHD equilibria: Effects of pressure variation within flux surfaces and of symmetry

NASA Astrophysics Data System (ADS)

Reiman, Allan H.

2016-07-01

In toroidal, magnetically confined plasmas, the heat and particle transport is strongly anisotropic, with transport along the field lines sufficiently strong relative to cross-field transport that the equilibrium pressure can generally be regarded as constant on the flux surfaces in much of the plasma. The regions near small magnetic islands, and those near the X-lines of larger islands, are exceptions, having a significant variation of the pressure within the flux surfaces. It is shown here that the variation of the equilibrium pressure within the flux surfaces in those regions has significant consequences for the pressure driven currents. It is further shown that the consequences are strongly affected by the symmetry of the magnetic field if the field is invariant under combined reflection in the poloidal and toroidal angles. (This symmetry property is called "stellarator symmetry.") In non-stellarator-symmetric equilibria, the pressure-driven currents have logarithmic singularities at the X-lines. In stellarator-symmetric MHD equilibria, the singular components of the pressure-driven currents vanish. These equilibria are to be contrasted with equilibria having B ṡ∇p =0 , where the singular components of the pressure-driven currents vanish regardless of the symmetry. They are also to be contrasted with 3D MHD equilibrium solutions that are constrained to have simply nested flux surfaces, where the pressure-driven current goes like 1 /x near rational surfaces, where x is the distance from the rational surface, except in the case of quasi-symmetric flux surfaces. For the purpose of calculating the pressure-driven currents near magnetic islands, we work with a closed subset of the MHD equilibrium equations that involves only perpendicular force balance, and is decoupled from parallel force balance. It is not correct to use the parallel component of the conventional MHD force balance equation, B ṡ∇p =0 , near magnetic islands. Small but nonzero values of B ṡ∇p are important in this region, and small non-MHD contributions to the parallel force balance equation cannot be neglected there. Two approaches are pursued to solve our equations for the pressure driven currents. First, the equilibrium equations are applied to an analytically tractable magnetic field with an island, obtaining explicit expressions for the rotational transform and magnetic coordinates, and for the pressure-driven current and its limiting behavior near the X-line. The second approach utilizes an expansion about the X-line to provide a more general calculation of the pressure-driven current near an X-line and of the rotational transform near a separatrix. The study presented in this paper is motivated, in part, by tokamak experiments with nonaxisymmetric magnetic perturbations, where significant differences are observed between the behavior of stellarator-symmetric and non-stellarator-symmetric configurations with regard to stabilization of edge localized modes by resonant magnetic perturbations. Implications for the coupling between neoclassical tearing modes, and for magnetic island stability calculations, are also discussed.

Understanding the effects of strain on morphological instabilities of a nanoscale island during heteroepitaxial growth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feng, Lu; Wang, Jing; Wang, Shibin

A comprehensive morphological stability analysis of a nanoscale circular island during heteroepitaxial growth is presented based on continuum elasticity theory. The interplay between kinetic and thermodynamic mechanisms is revealed by including strain-related kinetic processes. In the kinetic regime, the Burton-Cabrera-Frank model is adopted to describe the growth front of the island. Together with kinetic boundary conditions, various kinetic processes including deposition flow, adatom diffusion, attachment-detachment kinetics, and the Ehrlich-Schwoebel barrier can be taken into account at the same time. In the thermodynamic regime, line tension, surface energy, and elastic energy are considered. As the strain relief in the early stagesmore » of heteroepitaxy is more complicated than commonly suggested by simple consideration of lattice mismatch, we also investigate the effects of external applied strain and elastic response due to perturbations on the island shape evolution. The analytical expressions for elastic fields induced by mismatch strain, external applied strain, and relaxation strain are presented. A systematic approach is developed to solve the system via a perturbation analysis which yields the conditions of film morphological instabilities. Consistent with previous experimental and theoretical work, parametric studies show the kinetic evolution of elastic relaxation, island morphology, and film composition under various conditions. Our present work offers an effective theoretical approach to get a comprehensive understanding of the interplay between different growth mechanisms and how to tailor the growth mode by controlling the nature of the crucial factors.« less

Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility.

PubMed

Mořkovský, Libor; Janoušek, Václav; Reif, Jiří; Rídl, Jakub; Pačes, Jan; Choleva, Lukáš; Janko, Karel; Nachman, Michael W; Reifová, Radka

2018-02-01

Hybrid sterility is a common first step in the evolution of postzygotic reproductive isolation. According to Haldane's Rule, it affects predominantly the heterogametic sex. While the genetic basis of hybrid male sterility in organisms with heterogametic males has been studied for decades, the genetic basis of hybrid female sterility in organisms with heterogametic females has received much less attention. We investigated the genetic basis of reproductive isolation in two closely related avian species, the common nightingale (Luscinia megarhynchos) and the thrush nightingale (L. luscinia), that hybridize in a secondary contact zone and produce viable hybrid progeny. In accordance with Haldane's Rule, hybrid females are sterile, while hybrid males are fertile, allowing gene flow to occur between the species. Using transcriptomic data from multiple individuals of both nightingale species, we identified genomic islands of high differentiation (F ST ) and of high divergence (D xy ), and we analysed gene content and patterns of molecular evolution within these islands. Interestingly, we found that these islands were enriched for genes related to female meiosis and metabolism. The islands of high differentiation and divergence were also characterized by higher levels of linkage disequilibrium than the rest of the genome in both species indicating that they might be situated in genomic regions of low recombination. This study provides one of the first insights into genetic basis of hybrid female sterility in organisms with heterogametic females. © 2018 John Wiley & Sons Ltd.

Magma storage constrains by compositional zoning of plagioclase from dacites of the caldera forming eruptions of Vetrovoy Isthmus and Lvinaya Past’ Bay (Iturup Island, Kurile Islands)

NASA Astrophysics Data System (ADS)

Maksimovich, I. A.; Smirnov, S. Z.; Kotov, A. A.; Timina, T. Yu; Shevko, A. V.

2017-12-01

The Vetrovoy Isthmus and the Lvinaya Past’ Bay on the Iturup island (Kuril island arc) are the results of large Plinian eruptions of compositionally similar dacitic magmas. This study is devoted to a comparative analysis of the storage and crystallization conditions for magma reservoirs, which were a source of large-scale explosive eruptions. The plagioclase is most informative mineral in studying of the melt evolution. The studied plagioclases possess a complex zoning patterns, which are not typical for silicic rocks in island-arc systems. It was shown that increase of Ca in the plagioclase up to unusually high An95 is related to increase of H2O pressure in both volcanic magma chambers. The study revealed that minerals of the Vetrovoy Isthmus and Lvinaya Past’ crystallized from compositionally similar melts. Despite the compositional similarity of the melts, the phenocryst assemblage of the Lvinaya Past’ differs from the Vetrovoy Isthmus by the presence of the amphibole, which indicates that the pressure in the magmatic chamber exceeded 1-2 kbar at a 4-6 wt. % of H2O in the melt. The rocks of the Vetrovoy Isthmus do not contain amphibole phenocrysts, but melt and fluid inclusions assemblages in plagioclase demonstrate that the magma degassed in the course of evolution. This is an indication that the pressure did not exceed significantly 1-2 kbar.

Parallel sites implicate functional convergence of the hearing gene prestin among echolocating mammals.

PubMed

Liu, Zhen; Qi, Fei-Yan; Zhou, Xin; Ren, Hai-Qing; Shi, Peng

2014-09-01

Echolocation is a sensory system whereby certain mammals navigate and forage using sound waves, usually in environments where visibility is limited. Curiously, echolocation has evolved independently in bats and whales, which occupy entirely different environments. Based on this phenotypic convergence, recent studies identified several echolocation-related genes with parallel sites at the protein sequence level among different echolocating mammals, and among these, prestin seems the most promising. Although previous studies analyzed the evolutionary mechanism of prestin, the functional roles of the parallel sites in the evolution of mammalian echolocation are not clear. By functional assays, we show that a key parameter of prestin function, 1/α, is increased in all echolocating mammals and that the N7T parallel substitution accounted for this functional convergence. Moreover, another parameter, V1/2, was shifted toward the depolarization direction in a toothed whale, the bottlenose dolphin (Tursiops truncatus) and a constant-frequency (CF) bat, the Stoliczka's trident bat (Aselliscus stoliczkanus). The parallel site of I384T between toothed whales and CF bats was responsible for this functional convergence. Furthermore, the two parameters (1/α and V1/2) were correlated with mammalian high-frequency hearing, suggesting that the convergent changes of the prestin function in echolocating mammals may play important roles in mammalian echolocation. To our knowledge, these findings present the functional patterns of echolocation-related genes in echolocating mammals for the first time and rigorously demonstrate adaptive parallel evolution at the protein sequence level, paving the way to insights into the molecular mechanism underlying mammalian echolocation. © The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Virtual Oscillator Controls | Grid Modernization | NREL

Science.gov Websites

Virtual Oscillator Controls Virtual Oscillator Controls NREL is developing virtual oscillator Santa-Barbara, and SunPower. Publications Synthesizing Virtual Oscillators To Control Islanded Inverters Synchronization of Parallel Single-Phase Inverters Using Virtual Oscillator Control, IEEE Transactions on Power

Parallel Evolution of Sperm Hyper-Activation Ca2+ Channels.

PubMed

Cooper, Jacob C; Phadnis, Nitin

2017-07-01

Sperm hyper-activation is a dramatic change in sperm behavior where mature sperm burst into a final sprint in the race to the egg. The mechanism of sperm hyper-activation in many metazoans, including humans, consists of a jolt of Ca2+ into the sperm flagellum via CatSper ion channels. Surprisingly, all nine CatSper genes have been independently lost in several animal lineages. In Drosophila, sperm hyper-activation is performed through the cooption of the polycystic kidney disease 2 (pkd2) Ca2+ channel. The parallels between CatSpers in primates and pkd2 in Drosophila provide a unique opportunity to examine the molecular evolution of the sperm hyper-activation machinery in two independent, nonhomologous calcium channels separated by > 500 million years of divergence. Here, we use a comprehensive phylogenomic approach to investigate the selective pressures on these sperm hyper-activation channels. First, we find that the entire CatSper complex evolves rapidly under recurrent positive selection in primates. Second, we find that pkd2 has parallel patterns of adaptive evolution in Drosophila. Third, we show that this adaptive evolution of pkd2 is driven by its role in sperm hyper-activation. These patterns of selection suggest that the evolution of the sperm hyper-activation machinery is driven by sexual conflict with antagonistic ligands that modulate channel activity. Together, our results add sperm hyper-activation channels to the class of fast evolving reproductive proteins and provide insights into the mechanisms used by the sexes to manipulate sperm behavior. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

In Planta Recapitulation of Isoprene Synthase Evolution from Ocimene Synthases

PubMed Central

Li, Mingai; Xu, Jia; Algarra Alarcon, Alberto; Carlin, Silvia; Barbaro, Enrico; Cappellin, Luca; Velikova, Violeta; Vrhovsek, Urska; Loreto, Francesco; Varotto, Claudio

2017-01-01

Abstract Isoprene is the most abundant biogenic volatile hydrocarbon compound naturally emitted by plants and plays a major role in atmospheric chemistry. It has been proposed that isoprene synthases (IspS) may readily evolve from other terpene synthases, but this hypothesis has not been experimentally investigated. We isolated and functionally validated in Arabidopsis the first isoprene synthase gene, AdoIspS, from a monocotyledonous species (Arundo donax L., Poaceae). Phylogenetic reconstruction indicates that AdoIspS and dicots isoprene synthases most likely originated by parallel evolution from TPS-b monoterpene synthases. Site-directed mutagenesis demonstrated invivo the functional and evolutionary relevance of the residues considered diagnostic for IspS function. One of these positions was identified by saturating mutagenesis as a major determinant of substrate specificity in AdoIspS able to cause invivo a dramatic change in total volatile emission from hemi- to monoterpenes and supporting evolution of isoprene synthases from ocimene synthases. The mechanism responsible for IspS neofunctionalization by active site size modulation by a single amino acid mutation demonstrated in this study might be general, as the very same amino acidic position is implicated in the parallel evolution of different short-chain terpene synthases from both angiosperms and gymnosperms. Based on these results, we present a model reconciling in a unified conceptual framework the apparently contrasting patterns previously observed for isoprene synthase evolution in plants. These results indicate that parallel evolution may be driven by relatively simple biophysical constraints, and illustrate the intimate molecular evolutionary links between the structural and functional bases of traits with global relevance. PMID:28637270

Recent coastal evolution in a carbonate sandy environments and relation to beach ridge formation: the case of Anegada, British Virgin Islands

NASA Astrophysics Data System (ADS)

Cescon, Anna Lisa; Cooper, J. Andrew G.; Jackson, Derek W. T.

2014-05-01

In a changing climate context coastal areas will be affected by more frequent extreme events. Understanding the relationship between extreme events and coastal geomorphic response is critical to future adaptation plans. Beach ridge landforms commonly identified as hurricane deposits along tropical coasts in Australia and in the Caribbean Sea. However their formative processes in such environments are still not well understood. In particular, the role of different extreme wave events (storm waves, tsunami waves and extreme swell), in generating beach ridges is critical to their use as palaeotempestology archives. Anegada Island is a carbonate platform situated in the British Virgin Island between the Atlantic Ocean and the Caribbean Sea. Pleistocene in age, Anegada is surrounded by the Horseshoe fringing coral reef. Two Holocene sandy beach ridge plains are present on the western part of the island. The north beach ridge plain is Atlantic facing and has at least 30 ridges; the south beach ridge plain is Caribbean Sea facing and contains 10 ridges. Historical aerial photos enabled the shoreline evolution from 1953 to 2012 to be studied. Three different coastal domains are associate with the beach ridge plains: strong east-west longshore transport affects the north coastline, the south-west coastline from West End to Pomato Point represents an export corridor for these sediments and finally, along the southern coastline, from Pomato Point to Settling Point the area presents a depositional zone with little to no change in the last 70 years. The link between the extreme wave events that have affected Anegada Island in the last 70 years and beach ridge creation is discussed. Hurricane Donna crossed over Anegada Island in 1960: its geomorphological signature is tracked in the shoreline change analysis and its implication in beach ridge formation is discussed. Anegada Island has also been impacted by tsunami waves (Atwater et al., 2012) and a comparative discussion of the effects of hurricane and tsunami on the island will be presented. Atwater, B. et al., 2012. Geomorphic and stratigraphic evidence for an unusual tsunami or storm a few centuries ago at Anegada, British Virgin Islands. Natural Hazards, 63, pp. 51-84.

Native Americans, regional drought and tree Island evolution in the Florida Everglades

USGS Publications Warehouse

Bernhardt, C.

2011-01-01

This study uses palynologic data to determine the effects of regional climate variability and human activity on the formation and development of tree islands during the last ~4000 years. Although prolonged periods of aridity have been invoked as one mechanism for their formation, Native American land use has also been hypothesized as a driver of tree island development. Using pollen assemblages from head and near tail sediments collected on two tree islands and documented archeological data, the relative roles of Native Americans, climate variability, and recent water-management practices in forming and structuring Everglades tree islands are examined. The timing of changes recorded in the pollen record indicates that tree islands developed from sawgrass marshes ~3800 cal. yr BP, prior to human occupation. Major tree island expansion, recorded near tail sediments, occurred ~1000 years after initial tree island formation. Comparison of the timing of pollen assemblages with other proxy records indicates that tree island expansion is related to regional and global aridity correlated with southward migration of the Intertropical Convergence Zone. Local fire associated with droughts may also have influenced tree island expansion. This work suggests that Native American occupation did not significantly influence tree island formation and that the most important factors governing tree island expansion are extreme hydrologic events due to droughts and intense twentieth century water management.

Offshore sand-shoal development and evolution of Petit Bois Pass, Mississippi-Alabama Barrier Islands, Mississippi, USA

USGS Publications Warehouse

Flocks, James G.; Kelso, Kyle W.; Twichell, Gregory C.; Buster, Noreen A.; Baehr, John N.; Rosati, Julie D.; Wang, Ping; Roberts, Tiffany M.

2011-01-01

Assessment of recently collected geophysical and sediment-core data identifies an extensive shoal field located off Dauphin and Petit Bois Islands. The shoals are the product of Pleistocene fluvial deposition and Holocene marine-transgressive processes, and their position and orientation oblique to the modern shoreline has been stable over the past century. The underlying stratigraphy has also influenced the evolution of the barrier platform and inlets. Buried distributary channels bisect the platform, creating erosion hotspots that breach during intense and repeated storms. Inlet growth inhibits littoral transport, and over time, reduces the down-drift sand supply. These relations demonstrate the role of the antecedent geologic framework on morphologic evolution. This study is part of the USGS Northern Gulf of Mexico Ecosystem Change and Hazard Susceptibility Project and the USACE Mississippi Coastal Improvements Program. These projects produced a wealth of information regarding coastal geology, geomorphology, and physical resources; some of the initial results are presented here.

Bioclimatic and physical characterization of the world’s islands

PubMed Central

Weigelt, Patrick; Jetz, Walter; Kreft, Holger

2013-01-01

The Earth’s islands harbor a distinct, yet highly threatened, biological and cultural diversity that has been shaped by geographic isolation and unique environments. Island systems are key natural laboratories for testing theory in ecology and evolution. However, despite their potential usefulness for research, a quantitative description of island environments and an environmental classification are still lacking. Here, we prepare a standardized dataset and perform a comprehensive global environmental characterization for 17,883 of the world’s marine islands >1 km2 (∼98% of total island area). We consider area, temperature, precipitation, seasonality in temperature and precipitation, past climate change velocity, elevation, isolation, and past connectivity—key island characteristics and drivers of ecosystem processes. We find that islands are significantly cooler, wetter, and less seasonal than mainlands. Constrained by their limited area, they show less elevational heterogeneity. Wet temperate climates are more prevalent on islands, whereas desert climates are comparatively rare. We use ordination and clustering to characterize islands in multidimensional environmental space and to delimit island ecoregions, which provides unique insights into the environmental configuration and diversity of the world’s islands. Combining ordination and classification together with global environmental data in a common framework opens up avenues for a more integrative use of islands in biogeography, macroecology, and conservation. To showcase possible applications of the presented data, we predict vascular plant species richness for all 17,883 islands based on statistically derived environment–richness relationships. PMID:24003123

Demographic History of a Recent Invasion of House Mice on the Isolated Island of Gough

PubMed Central

Gray, Melissa M.; Wegmann, Daniel; Haasl, Ryan J.; White, Michael A.; Gabriel, Sofia I.; Searle, Jeremy B.; Cuthbert, Richard J.; Ryan, Peter G.; Payseur, Bret A.

2014-01-01

Island populations provide natural laboratories for studying key contributors to evolutionary change, including natural selection, population size, and the colonization of new environments. The demographic histories of island populations can be reconstructed from patterns of genetic diversity. House mice (Mus musculus) inhabit islands throughout the globe, making them an attractive system for studying island colonization from a genetic perspective. Gough Island, in the central South Atlantic Ocean, is one of the remotest islands in the world. House mice were introduced to Gough Island by sealers during the 19th century, and display unusual phenotypes, including exceptionally large body size and carnivorous feeding behavior. We describe genetic variation in Gough Island mice using mitochondrial sequences, nuclear sequences, and microsatellites. Phylogenetic analysis of mitochondrial sequences suggested that Gough Island mice belong to Mus musculus domesticus, with the maternal lineage possibly originating in England or France. Cluster analyses of microsatellites revealed genetic membership for Gough Island mice in multiple coastal populations in Western Europe, suggesting admixed ancestry. Gough Island mice showed substantial reductions in mitochondrial and nuclear sequence variation and weak reductions in microsatellite diversity compared with Western European populations, consistent with a population bottleneck. Approximate Bayesian Computation (ABC) estimated that mice recently colonized Gough Island (~100 years ago) and experienced a 98% reduction in population size followed by a rapid expansion. Our results indicate that the unusual phenotypes of Gough Island mice evolved rapidly, positioning these mice as useful models for understanding rapid phenotypic evolution. PMID:24617968

Subsurface mapping of the Ross Island flexural basin, southwest Antarctica

NASA Astrophysics Data System (ADS)

Wenman, Christopher P.

Ross Island is a post-Miocene (< 4.6 Ma) volcanic island located in the Ross Sea region of southwest Antarctica. This region of Antarctica borders the western edge of the West Antarctic Rift System, along the Transantarctic Mountain front. Marine and over-ice multi-channel seismic reflection surveys and borehole studies targeting the Ross Sea region over the last 30+ years have been used in this study to develop a seismic stratigraphic model of the development and evolution of the Ross Island flexural basin. Four key stratigraphic horizons were identified and mapped to fully capture the basin-fill, as well as strata lying above and below the flexural basin. From oldest to youngest these horizons are named RIB-m, RIM-g, RIM-b and RIB-r. Time structure, isochron and isochore maps were created for the horizons and the stratigraphic intervals they bound. The seismic stratigraphic record shows the Ross Island flexural moat formation post-dates the main tectonic subsidence phase within the Victoria Land Basin. The maps presented here are the first to fully illustrate the evolution of the Ross Island flexural basin. The maps highlight depositional patterns of two distinct periods of flexural subsidence and basin-filling superimposed on the older N-S trending Victoria Land Basin depocenter. Two units of flexural basin fill, Unit FFI between horizons RIM-g and RIM-b (the oldest flexural basin fill), and Unit FFII between horizons RIM-b and RIB-r (the youngest flexural basin fill) are associated with the two periods of flexural subsidence. Flexural moat subsidence and subsequent filling occurred episodically during periods of active volcanism on the island. Unit FFI is estimated to range from ca. 4 to 2 Ma, corresponding with formation of the Mt. Bird volcanic edifice on Ross Island. Unit FFII ranges in age from ca. 2 to 1 Ma, and is related to Mt. Terror, Mt. Erebus, and Hut Point Peninsula volcanism. The isochore maps suggest the depocenter of the flexural basin during both time intervals was located north of the island, instead of directly beneath the Ross Island topographic load. Factors contributing to the northerly location of the depocenter include i) volcanic loading by McMurdo Volcanic Group subsea volcanic features north of the island, ii) partial compensation of the main Ross Island load by low-density, partially molten rock beneath the island, iii) extensional faulting within the Terror Rift, and iv) seaward-thickening shelf sediments transported from the Ross Ice Shelf. The seismic data show that the onset of filling of the flexural moat around Ross Island coincided with the end of ice grounding events in the area. We infer that this was caused by flexural subsidence of the seafloor to accommodate the Ross Island load.

Investigating Terrain Effects on Nearshore Cloud Evolution in Deepwave through Time-Lapse Photogrammetry

NASA Astrophysics Data System (ADS)

Osborne, T. C.; Billings, B. J.

2014-12-01

Stereo images of cloud patterns and nearshore waves upstream of the Southern Alps during the DEEPWAVE field campaign are presented through photogrammetric analysis. The photos highlighted in this case were taken in the afternoon of Friday, 13 June 2014. These photos were chosen because they may allow for focused analysis of terrain effects on cloud evolution. Stratocumulus and other cumuliform, as well as cirrus clouds were captured as the sun set over the Tasman Sea, one of the South Pacific Ocean's marginal seas. Breaks in the thin band of stratocumulus along the shoreline, as well as the total time for cloud layer dissipation are also of interest. A possible barrier jet causing the southward motion of the stratocumulus layer is also investigated. Views look northwest from Serpentine Road in Kumara Junction, South Island, New Zealand. An Integrated Sounding System (ISS) located at the Hokitika Airport was the primary source of vertical profiles. The upper air sounding closest to the shoot time and location, plotted from Hokitika's 11:05 UTC upsonde data, shows 10 mph NE winds near the surface. Images were taken on days with research flights over New Zealand from 2 June to 23 June 2014 to match DEEPWAVE objectives. On the night of 13 June 2014, NSF/NCAR's HIAPER GV research aircraft completed a flight from Christchurch over the South Island. This flight became known as Intensive Observing Period 3 (IOP 3) Sensitivity Flight. Methods applied in the Terrain-Induced Rotor Experiment (T-REX) by Grubišić and Grubišić (2007) were closely followed while capturing stereo photographic images. Two identical cameras were positioned with a separation baseline near 270 meters. Each camera was tilted upward approximately seven degrees and carefully positioned to capture parallel fields of view of the site. Developing clouds were captured using synchronized camera timers on a five second interval. Ultimately, cloud locations and measurements can be determined using the recorded GPS locations of the cameras. The Camera Calibration Toolbox available for MATLAB was used in order to perform these elaborate triangulation calculations.

The crustal structure of Ellesmere Island, Arctic Canada—teleseismic mapping across a remote intraplate orogenic belt

NASA Astrophysics Data System (ADS)

Schiffer, Christian; Stephenson, Randell; Oakey, Gordon N.; Jacobsen, Bo H.

2016-03-01

Ellesmere Island in Arctic Canada displays a complex geological evolution. The region was affected by two distinct orogenies, the Palaeozoic Ellesmerian orogeny (the Caledonian equivalent in Arctic Canada and Northern Greenland) and the Palaeogene Eurekan orogeny, related to the opening of Baffin Bay and the consequent convergence of the Greenland plate. The details of this complex evolution and the present-day deep structure are poorly constrained in this remote area and deep geophysical data are sparse. Receiver function analysis of seven temporary broad-band seismometers of the Ellesmere Island Lithosphere Experiment complemented by two permanent stations provides important data on the crustal velocity structure of Ellesmere Island. The crustal expression of the northernmost tectonic block of Ellesmere Island (˜82°-83°N), Pearya, which was accreted during the Ellesmerian orogeny, is similar to that at the southernmost part, which is part of the Precambrian Laurentian (North America-Greenland) craton. Both segments have thick crystalline crust (˜35-36 km) and comparable velocity-depth profiles. In contrast, crustal thickness in central Ellesmere Island decreases from ˜24-30 km in the Eurekan fold and thrust belt (˜79.7°-80.6°N) to ˜16-20 km in the Hazen Stable Block (HSB; ˜80.6°-81.4°N) and is covered by a thick succession of metasediments. A deep crustal root (˜48 km) at ˜79.6°N is interpreted as cratonic crust flexed beneath the Eurekan fold and thrust belt. The Carboniferous to Palaeogene sedimentary succession of the Sverdrup Basin is inferred to be up to 1-4 km thick, comparable to geologically-based estimates, near the western margin of the HSB.

Geochronological constraints on the evolution of El Hierro (Canary Islands)

NASA Astrophysics Data System (ADS)

Becerril, Laura; Ubide, Teresa; Sudo, Masafumi; Martí, Joan; Galindo, Inés; Galé, Carlos; Morales, Jose María; Yepes, Jorge; Lago, Marceliano

2016-01-01

New age data have been obtained to time constrain the recent Quaternary volcanism of El Hierro (Canary Islands) and to estimate its recurrence rate. We have carried out 40Ar/39Ar geochronology on samples spanning the entire volcanostratigraphic sequence of the island and 14C geochronology on the most recent eruption on the northeast rift of the island: 2280 ± 30 yr BP. We combine the new absolute data with a revision of published ages onshore, some of which were identified through geomorphological criteria (relative data). We present a revised and updated chronology of volcanism for the last 33 ka that we use to estimate the maximum eruptive recurrence of the island. The number of events per year determined is 9.7 × 10-4 for the emerged part of the island, which means that, as a minimum, one eruption has occurred approximately every 1000 years. This highlights the need of more geochronological data to better constrain the eruptive recurrence of El Hierro.

Sediment data collected in 2010 from Cat Island, Mississippi

USGS Publications Warehouse

Buster, Noreen A.; Kelso, Kyle W.; Miselis, Jennifer L.; Kindinger, Jack G.

2014-01-01

Scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center, in collaboration with the U.S. Army Corps of Engineers, conducted geophysical and sedimentological surveys in 2010 around Cat Island, Mississippi, which is the westernmost island in the Mississippi-Alabama barrier island chain. The objective of the study was to understand the geologic evolution of Cat Island relative to other barrier islands in the northern Gulf of Mexico by identifying relationships between the geologic history, present day morphology, and sediment distribution. This data series serves as an archive of terrestrial and marine sediment vibracores collected August 4-6 and October 20-22, 2010, respectively. Geographic information system data products include marine and terrestrial core locations and 2007 shoreline data. Additional files include marine and terrestrial core description logs, core photos, results of sediment grain-size analyses, optically stimulated luminescence dating and carbon-14 dating locations and results, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.

Real-Time Reciprocal Space Mapping of Nano-Islands Induced by Quantum Confinement

NASA Astrophysics Data System (ADS)

Hong, Hawoong; Gray, Aaron; Chiang, T.-C.

2011-01-01

The effects of quantum confinement have been observed pronouncedly in the island morphology of Pb thin films. The evolution of these nano-islands on Si (111)-(7 × 7) and sapphire (001) surfaces has been studied with a new X-ray diffraction method. A charge-coupled device (CCD) camera was used to collect two- and three-dimensional (2-D and 3-D, respectively) maps of the surface X-ray diffraction in real time. Large ranges of the reflectivity curves, with rocking curves at every point on the reflectivity curves, could be measured continuously in a relatively short amount of time. The abundance of information from 2-D k-space maps reveals clear changes in the growth modes of these thin Pb films. With the 3-D extension of this method, it was possible to observe the ordering of the islands. The islands maintain a nearly uniform interisland distance but lack any angular correlation. The interisland ordering is correlated well with the development of "magic" island heights caused by quantum confinement.

Evidence for coral island formation during rising sea level in the central Pacific Ocean

NASA Astrophysics Data System (ADS)

Kench, Paul S.; Owen, Susan D.; Ford, Murray R.

2014-02-01

The timing and evolution of Jabat Island, Marshall Islands, was investigated using morphostratigraphic analysis and radiometric dating. Results show the first evidence of island building in the Pacific during latter stages of Holocene sea level rise. A three-phase model of development of Jabat is presented. Initially, rapid accumulation of coarse sediments on Jabat occurred 4800-4000 years B.P. across a reef flat higher than present level, as sea level continued to rise. During the highstand, island margins and particularly the western margin accreted vertically to 2.5-3.0 m above contemporary ridge elevations. This accumulation phase was dominated by sand-size sediments. Phase three involved deposition of gravel ridges on the northern reef, as sea level fell to present position. Jabat has remained geomorphically stable for the past 2000 years. Findings suggest reef platforms may accommodate the oldest reef islands in atoll systems, which may have profound implications for questions of prehistoric migration through Pacific archipelagos.

Graphics Processing Unit–Enhanced Genetic Algorithms for Solving the Temporal Dynamics of Gene Regulatory Networks

PubMed Central

García-Calvo, Raúl; Guisado, JL; Diaz-del-Rio, Fernando; Córdoba, Antonio; Jiménez-Morales, Francisco

2018-01-01

Understanding the regulation of gene expression is one of the key problems in current biology. A promising method for that purpose is the determination of the temporal dynamics between known initial and ending network states, by using simple acting rules. The huge amount of rule combinations and the nonlinear inherent nature of the problem make genetic algorithms an excellent candidate for finding optimal solutions. As this is a computationally intensive problem that needs long runtimes in conventional architectures for realistic network sizes, it is fundamental to accelerate this task. In this article, we study how to develop efficient parallel implementations of this method for the fine-grained parallel architecture of graphics processing units (GPUs) using the compute unified device architecture (CUDA) platform. An exhaustive and methodical study of various parallel genetic algorithm schemes—master-slave, island, cellular, and hybrid models, and various individual selection methods (roulette, elitist)—is carried out for this problem. Several procedures that optimize the use of the GPU’s resources are presented. We conclude that the implementation that produces better results (both from the performance and the genetic algorithm fitness perspectives) is simulating a few thousands of individuals grouped in a few islands using elitist selection. This model comprises 2 mighty factors for discovering the best solutions: finding good individuals in a short number of generations, and introducing genetic diversity via a relatively frequent and numerous migration. As a result, we have even found the optimal solution for the analyzed gene regulatory network (GRN). In addition, a comparative study of the performance obtained by the different parallel implementations on GPU versus a sequential application on CPU is carried out. In our tests, a multifold speedup was obtained for our optimized parallel implementation of the method on medium class GPU over an equivalent sequential single-core implementation running on a recent Intel i7 CPU. This work can provide useful guidance to researchers in biology, medicine, or bioinformatics in how to take advantage of the parallelization on massively parallel devices and GPUs to apply novel metaheuristic algorithms powered by nature for real-world applications (like the method to solve the temporal dynamics of GRNs). PMID:29662297

Graphics Processing Unit-Enhanced Genetic Algorithms for Solving the Temporal Dynamics of Gene Regulatory Networks.

PubMed

García-Calvo, Raúl; Guisado, J L; Diaz-Del-Rio, Fernando; Córdoba, Antonio; Jiménez-Morales, Francisco

2018-01-01

Understanding the regulation of gene expression is one of the key problems in current biology. A promising method for that purpose is the determination of the temporal dynamics between known initial and ending network states, by using simple acting rules. The huge amount of rule combinations and the nonlinear inherent nature of the problem make genetic algorithms an excellent candidate for finding optimal solutions. As this is a computationally intensive problem that needs long runtimes in conventional architectures for realistic network sizes, it is fundamental to accelerate this task. In this article, we study how to develop efficient parallel implementations of this method for the fine-grained parallel architecture of graphics processing units (GPUs) using the compute unified device architecture (CUDA) platform. An exhaustive and methodical study of various parallel genetic algorithm schemes-master-slave, island, cellular, and hybrid models, and various individual selection methods (roulette, elitist)-is carried out for this problem. Several procedures that optimize the use of the GPU's resources are presented. We conclude that the implementation that produces better results (both from the performance and the genetic algorithm fitness perspectives) is simulating a few thousands of individuals grouped in a few islands using elitist selection. This model comprises 2 mighty factors for discovering the best solutions: finding good individuals in a short number of generations, and introducing genetic diversity via a relatively frequent and numerous migration. As a result, we have even found the optimal solution for the analyzed gene regulatory network (GRN). In addition, a comparative study of the performance obtained by the different parallel implementations on GPU versus a sequential application on CPU is carried out. In our tests, a multifold speedup was obtained for our optimized parallel implementation of the method on medium class GPU over an equivalent sequential single-core implementation running on a recent Intel i7 CPU. This work can provide useful guidance to researchers in biology, medicine, or bioinformatics in how to take advantage of the parallelization on massively parallel devices and GPUs to apply novel metaheuristic algorithms powered by nature for real-world applications (like the method to solve the temporal dynamics of GRNs).

Capture zone area distributions for nucleation and growth of islands during submonolayer deposition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Han, Yong; Li, Maozhi; Evans, James W.

2016-12-07

A fundamental evolution equation is developed to describe the distribution of areas of capture zones (CZs) associated with islands formed by homogeneous nucleation and growth during submonolayer deposition on perfect flat surfaces. This equation involves various quantities which characterize subtle spatial aspects of the nucleation process. These quantities in turn depend on the complex stochastic geometry of the CZ tessellation of the surface, and their detailed form determines the CZ area distribution (CZD) including its asymptotic features. For small CZ areas, behavior of the CZD reflects the critical island size, i. For large CZ areas, it may reflect the probabilitymore » for nucleation near such large CZs. Predictions are compared with kinetic Monte Carlo simulation data for models with two-dimensional compact islands with i = 1 (irreversible island formation by diffusing adatom pairs) and i = 0 (adatoms spontaneously convert to stable nuclei, e.g., by exchange with the substrate).« less

The evolution of the Indian Ocean parrots (Psittaciformes): extinction, adaptive radiation and eustacy.

PubMed

Kundu, S; Jones, C G; Prys-Jones, R P; Groombridge, J J

2012-01-01

Parrots are among the most recognisable and widely distributed of all bird groups occupying major parts of the tropics. The evolution of the genera that are found in and around the Indian Ocean region is particularly interesting as they show a high degree of heterogeneity in distribution and levels of speciation. Here we present a molecular phylogenetic analysis of Indian Ocean parrots, identifying the possible geological and geographical factors that influenced their evolution. We hypothesise that the Indian Ocean islands acted as stepping stones in the radiation of the Old-World parrots, and that sea-level changes may have been an important determinant of current distributions and differences in speciation. A multi-locus phylogeny showing the evolutionary relationships among genera highlights the interesting position of the monotypic Psittrichas, which shares a common ancestor with the geographically distant Coracopsis. An extensive species-level molecular phylogeny indicates a complex pattern of radiation including evidence for colonisation of Africa, Asia and the Indian Ocean islands from Australasia via multiple routes, and of island populations 'seeding' continents. Moreover, comparison of estimated divergence dates and sea-level changes points to the latter as a factor in parrot speciation. This is the first study to include the extinct parrot taxa, Mascarinus mascarinus and Psittacula wardi which, respectively, appear closely related to Coracopsis nigra and Psittacula eupatria. Copyright © 2011 Elsevier Inc. All rights reserved.

Monitoring Data-Structure Evolution in Distributed Message-Passing Programs

NASA Technical Reports Server (NTRS)

Sarukkai, Sekhar R.; Beers, Andrew; Woodrow, Thomas S. (Technical Monitor)

1996-01-01

Monitoring the evolution of data structures in parallel and distributed programs, is critical for debugging its semantics and performance. However, the current state-of-art in tracking and presenting data-structure information on parallel and distributed environments is cumbersome and does not scale. In this paper we present a methodology that automatically tracks memory bindings (not the actual contents) of static and dynamic data-structures of message-passing C programs, using PVM. With the help of a number of examples we show that in addition to determining the impact of memory allocation overheads on program performance, graphical views can help in debugging the semantics of program execution. Scalable animations of virtual address bindings of source-level data-structures are used for debugging the semantics of parallel programs across all processors. In conjunction with light-weight core-files, this technique can be used to complement traditional debuggers on single processors. Detailed information (such as data-structure contents), on specific nodes, can be determined using traditional debuggers after the data structure evolution leading to the semantic error is observed graphically.

Proton core-beam system in the expanding solar wind: Hybrid simulations

NASA Astrophysics Data System (ADS)

Hellinger, Petr; Trávníček, Pavel M.

2011-11-01

Results of a two-dimensional hybrid expanding box simulation of a proton beam-core system in the solar wind are presented. The expansion with a strictly radial magnetic field leads to a decrease of the ratio between the proton perpendicular and parallel temperatures as well as to an increase of the ratio between the beam-core differential velocity and the local Alfvén velocity creating a free energy for many different instabilities. The system is indeed most of the time marginally stable with respect to the parallel magnetosonic, oblique Alfvén, proton cyclotron and parallel fire hose instabilities which determine the system evolution counteracting some effects of the expansion and interacting with each other. Nonlinear evolution of these instabilities leads to large modifications of the proton velocity distribution function. The beam and core protons are slowed with respect to each other and heated, and at later stages of the evolution the two populations are not clearly distinguishable. On the macroscopic level the instabilities cause large departures from the double adiabatic prediction leading to an efficient isotropization of effective proton temperatures in agreement with Helios observations.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Han, Yong; Lii-Rosales, A.; Zhou, Y.

Theory and stochastic lattice-gas modeling is developed for the formation of intercalated metal islands in the gallery between the top layer and the underlying layer at the surface of layered materials. Our model for this process involves deposition of atoms, some fraction of which then enter the gallery through well-separated pointlike defects in the top layer. Subsequently, these atoms diffuse within the subsurface gallery leading to nucleation and growth of intercalated islands nearby the defect point source. For the case of a single point defect, continuum diffusion equation analysis provides insight into the nucleation kinetics. However, complementary tailored lattice-gas modelingmore » produces a more comprehensive and quantitative characterization. We analyze the large spread in nucleation times and positions relative to the defect for the first nucleated island. We also consider the formation of subsequent islands and the evolution of island growth shapes. The shapes reflect in part our natural adoption of a hexagonal close-packed island structure. As a result, motivation and support for the model is provided by scanning tunneling microscopy observations of the formation of intercalated metal islands in highly-ordered pyrolytic graphite at higher temperatures.« less

Relationship between tectonics and magmatism on Faial island (Azores, Portugal)

NASA Astrophysics Data System (ADS)

Trippanera, D.; Salvatore, M.; Porreca, M.; Ruch, J.; Pimentel, A.; Pacheco, J.; Acocella, V.

2012-04-01

The Azores Islands are located on the triple junction involving Eurasian, Nubian and North American plates. Faial is the nearest island to the Atlantic Ridge and one of the most active, with the 1957-58 Capelinhos eruption and the 1998 earthquake. Faial consists of three main structural features: a well exposed graben structure (eastern sector), a stratovolcano with a summit caldera (central part) and a fissure zone peninsula (western part). To analyse the relationships between magmatic and tectonic activity at Faial we use a multidisciplinary approach based on: 1) remote sensing analysis (DEM and aerial photographs); 2) geological field survey and 3) paleomagnetic analysis. The age of volcanism in Faial is not well constrained. Our paleomagnetic results show that the oldest rocks of the island have a reverse polarity, implying that they are older than 780 ka (Brunhes-Matuyama polarity transition). The structural data indicate that the main fault system, including the graben structure, is WNW-ESE oriented and shows a general transtensive kinematics with a dextral component and a NE-SW oriented extension direction of the island. Most of the dikes, volcanic vent alignments and extensional fractures are sub-parallel to the main fault system (WNW-ESE). A secondary system of fractures and dikes is NNE-SSW oriented. Inside the graben, the bedding attitude is parallel to the direction of the axis of the graben and dipping outward. This attitude suggests an outward tilt of the blocks between the faults and that the graben consists of two oppositely verging-dominoes. We have estimated the stretching factor (β=1,35) and the minimum extensional rate (2,54 ± 0.08 mm/a) of the graben. The obtained direction and rate of the extension within the Faial graben are similar to those of the nearby Terceira Rift. The absence of a clear westward continuity of the latter suggests that the Faial - Pico magmatic segment could be the SW continuation of the segmented Terceira Rift, above the current hot spot.

Quantifying In Situ Metal and Organic Contaminant Mobility in Marine Sediments

DTIC Science & Technology

2009-01-01

and west of Ford Island, within the Pearl Harbor Naval Base. Sediments are fine grain silts and clays of basaltic origins and contain various... fiber filters for organics), and check valves (Figure 8) connected to synchronized parallel rotary valves connected to the collection chamber. Samples

Parallel Evolution of Sperm Hyper-Activation Ca2+ Channels

PubMed Central

Phadnis, Nitin

2017-01-01

Abstract Sperm hyper-activation is a dramatic change in sperm behavior where mature sperm burst into a final sprint in the race to the egg. The mechanism of sperm hyper-activation in many metazoans, including humans, consists of a jolt of Ca2+ into the sperm flagellum via CatSper ion channels. Surprisingly, all nine CatSper genes have been independently lost in several animal lineages. In Drosophila, sperm hyper-activation is performed through the cooption of the polycystic kidney disease 2 (pkd2) Ca2+ channel. The parallels between CatSpers in primates and pkd2 in Drosophila provide a unique opportunity to examine the molecular evolution of the sperm hyper-activation machinery in two independent, nonhomologous calcium channels separated by > 500 million years of divergence. Here, we use a comprehensive phylogenomic approach to investigate the selective pressures on these sperm hyper-activation channels. First, we find that the entire CatSper complex evolves rapidly under recurrent positive selection in primates. Second, we find that pkd2 has parallel patterns of adaptive evolution in Drosophila. Third, we show that this adaptive evolution of pkd2 is driven by its role in sperm hyper-activation. These patterns of selection suggest that the evolution of the sperm hyper-activation machinery is driven by sexual conflict with antagonistic ligands that modulate channel activity. Together, our results add sperm hyper-activation channels to the class of fast evolving reproductive proteins and provide insights into the mechanisms used by the sexes to manipulate sperm behavior. PMID:28810709

In Galápagos … and Uncomfortable with Evolution

ERIC Educational Resources Information Center

Cotner, Sehoya; Graczyk, Hannah; Rodríguez Garcia, José Luis; Moore, Randy

2016-01-01

In June 2013, the third World Evolution Summit convened on San Cristóbal, hosting scientists from around the world (Paz-y-Miño-C and Espinosa 2013)--neither the first nor likely the last gathering of biologists on these remote islands. Clearly, both locals and an international audience perceive Galápagos as figuring prominently in discourse about…

Creep, dike intrusion, and magma chamber deflation model for the 2000 Miyake eruption and the Izu islands earthquakes

NASA Astrophysics Data System (ADS)

Ozawa, S.; Miyazaki, S.; Nishimura, T.; Murakami, M.; Kaidzu, M.; Imakiire, T.; Ji, X.

2004-02-01

Analysis of Global Positioning System data shows shrinkage of Miyake Island and the widening between Nijima and Kozu Islands during the period of the Miyake island volcanic activity and the ensuing Izu islands earthquakes in 2000. The estimated time evolution of a model consisting of a dike, creeping faults, and a Mogi source suggests that a crack opening on Miyake Island occurred immediately after the start of the seismic activities on 26 June and ended within several days at the west coast of Miyake Island. After the seabed eruption on 27 June, magma migrated from Miyake Island to Kozu and Nijima Islands within several days. The estimated volume of intruded magma totals around 1.2 × 109 m3. Associated with the magma intrusion between Miyake and Kozu Islands, left-lateral and right-lateral creep motions occurred in regions off the west coast of Miyake Island and near Kozu Island. The accumulated moment energy is equivalent to an earthquake of Mw 6.6 and 6.6 for right-lateral and left-lateral creeping faults, respectively. The estimated magma chamber continued deflation beneath the southwestern part of Miyake Island from 26 June, totaling around 0.12 × 109 m3 in volume change, in addition to the collapse volume of 0.6 × 109 m3 at the summit of Mount Oyama on Miyake Island. The volume change on Miyake Island can be compensated by the migrated magma toward Kozu Island from the deflation source beneath Miyake Island. The deflation speed of the magma chamber beneath Miyake Island decreased and increased before and after the eruption of 14-15 July and 18 August, suggesting a change in balance of mass influx and draining out rate of the magma chamber.

Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form.

PubMed Central

Morrison, C L; Harvey, A W; Lavery, S; Tieu, K; Huang, Y; Cunningham, C W

2002-01-01

The repeated appearance of strikingly similar crab-like forms in independent decapod crustacean lineages represents a remarkable case of parallel evolution. Uncertainty surrounding the phylogenetic relationships among crab-like lineages has hampered evolutionary studies. As is often the case, aligned DNA sequences by themselves were unable to fully resolve these relationships. Four nested mitochondrial gene rearrangements--including one of the few reported movements of an arthropod protein-coding gene--are congruent with the DNA phylogeny and help to resolve a crucial node. A phylogenetic analysis of DNA sequences, and gene rearrangements, supported five independent origins of the crab-like form, and suggests that the evolution of the crab-like form may be irreversible. This result supports the utility of mitochondrial gene rearrangements in phylogenetic reconstruction. PMID:11886621

Evolution of reproductive life histories in island birds worldwide

PubMed Central

Covas, Rita

2012-01-01

Island environments typically share characteristics such as impoverished biotas and less-seasonal climates, which should be conducive to specific adaptations by organisms. However, with the exception of morphological studies, broad-scale tests of patterns of adaptation on islands are rare. Here, I examine reproductive patterns in island birds worldwide. Reproductive life histories are influenced by latitude, which could affect the response to insularity; therefore, I additionally test this hypothesis. Island colonizers showed mostly bi-parental care, but there was a significant increase in cooperative breeding on islands. Additionally, I found support for previous suggestions of reduced fecundity, longer developmental periods and increased investment in young on islands. However, clutch size increased with latitude at a rate nearly five times faster on the mainland than on the islands revealing a substantially stronger effect of insularity at higher latitudes. Latitude and insularity may also interact to determine egg volume and incubation periods, but these effects were less clear. Analyses of reproductive success did not support an effect of reduced nest predation as a driver of reproductive change, but this requires further study. The effect of latitude detected here suggests that the evolutionary changes associated with insularity relate to environmental stability and improved adult survival. PMID:22072609

Nucleation and growth kinetics for intercalated islands during deposition on layered materials with isolated pointlike surface defects

DOE PAGES

Han, Yong; Lii-Rosales, A.; Zhou, Y.; ...

2017-10-13

Theory and stochastic lattice-gas modeling is developed for the formation of intercalated metal islands in the gallery between the top layer and the underlying layer at the surface of layered materials. Our model for this process involves deposition of atoms, some fraction of which then enter the gallery through well-separated pointlike defects in the top layer. Subsequently, these atoms diffuse within the subsurface gallery leading to nucleation and growth of intercalated islands nearby the defect point source. For the case of a single point defect, continuum diffusion equation analysis provides insight into the nucleation kinetics. However, complementary tailored lattice-gas modelingmore » produces a more comprehensive and quantitative characterization. We analyze the large spread in nucleation times and positions relative to the defect for the first nucleated island. We also consider the formation of subsequent islands and the evolution of island growth shapes. The shapes reflect in part our natural adoption of a hexagonal close-packed island structure. As a result, motivation and support for the model is provided by scanning tunneling microscopy observations of the formation of intercalated metal islands in highly-ordered pyrolytic graphite at higher temperatures.« less

Water-level and wave measurements in the Chandeleur Islands, Louisiana, 2012 and 2013

USGS Publications Warehouse

Dickhudt, Patrick J.; Sherwood, Christopher R.; DeWitt, Nancy T.

2015-01-01

This report documents measurements of atmospheric pressure, water levels, and waves made by the U.S. Geological Survey in the Chandeleur Islands, Louisiana, during 2012 and 2013 as part of the Barrier Island Evolution Research project. Simple, inexpensive pressure sensors mounted in shallow wells were buried in the beach and left for one hurricane season and one winter-storm season. Gauges with rapid-sampling pressure sensors that provided nondirectional wave data and water-level data were mounted on rugged mounts on the Chandeleur Sound side and at the base of a tower at the northern end of the island chain. Additionally, an atmospheric pressure sensor was mounted on the tower to provide a local atmospheric pressure measurement for correcting the submerged pressure records.

Late tectonic uplift of an inverted oceanic basin in South East Asia: the case of Palawan Island (western Philippines)

NASA Astrophysics Data System (ADS)

Meresse, F.; Savva, D.; Pubellier, M.; Steuer, S.; Franke, D.; Cordey, F.; Muller, C.; Sapin, F.; Mouly, B.; Auxiètre, J.-L.

2012-04-01

The elongated island of Palawan, bounded by two marginal basins, the South China Sea to the North and the Sulu Sea to the South is composed of remnants of an inverted basin (Proto-South China Sea) thrusted onto the margin of a continental terrane which rifted away from the Chinese-Vietnamese margin. Based on field observations coupled with seismic and drill-holes data, our study focuses on the structural architecture of the island in order to decipher the geodynamic evolution of the southern margin of the South China Sea. Structurally, the Palawan Island consists of: (i) the Palawan wedge, which extends towards the South China Sea is composed of deformed slope to deep ocean deposits of Cretaceous (north Palawan) to Tertiary (central and south Palawan) ages. This accretionnary wedge is characterized by small wavelength folds of mainly NE-SW trend. Offshore, the unconformable Middle-Late Miocene Tabon limestones unit postdates the last stages of the Palawan wedge growth/setting; (ii) On top of this wedge lie thrust slices of ophiolite bodies comprising ribbon cherts of Albian age as indicated by radiolarians.; these bodies are likely to be relicts of the now-subducted Proto South China Sea; (iii) The central and southern parts of the Palawan island are characterized by a large wavelength antiform of NE-SW trend. This structure is sealed by the slightly tilted Early Pliocene marls unit; (iv) The island also presents necking zones bordered by N-S trending transform faults. This area witnessed the geodynamic evolution of the South East Asia which consists of a succession of opening/closure of oceanic basins and block accretions. The Palawan Island therefore results of the closing of the Proto-South China Sea which once formed both the Palawan accretionary wedge and the overlying ophiolite tectonic slices. During a later compressive event, the rifted continental margin which composes the basement of the Island was inverted, inducing the uplift and the large scale folding of the Palawan Island. In a final stage, the strain relaxing results in the formation of the necking zones, probably reactivating the inherited transform faults of the Proto-South China Sea. Keywords: Palawan Island; South China Sea; oceanic basin; inverted margin; Ophiolite.

Seawater-overwash impacts on freshwater-lens water supplies of low-lying oceanic islands: example from Roi-Namur Island, Kwajalein Atoll, Republic of the Marshall Islands

NASA Astrophysics Data System (ADS)

Voss, C. I.; Gingerich, S. B.

2015-12-01

Low-lying oceanic islands host thin freshwater lenses subject to long-term aquifer salinization by seawater overwash. The lens is often the sole-source water supply for inhabitants. As maximum elevation for these islands is only a few meters above sea level, overwash can occur during high tides and storm surges. Sea level rise due to climate change will make overwash events even more common. The thin freshwater lenses, a few meters thick, are underlain by seawater, so pumping must be done carefully, often with horizontal skimming wells. Even a small amount of downward seawater infiltration from an overwash event can render the water supply non-potable. Where permeability is high, seawater infiltrates quickly, but seawater that infiltrates lower-permeability zones may remain for many months causing groundwater to remain non-potable, leaving residents without a reliable freshwater source. Initial post-overwash salinization is driven by the higher density of the invading saltwater, which sinks and mixes into the fresher water in potentially-complex patterns determined by: distribution of flooding and post-flood ponding, locations of permeable paths, and the inherently complex flow fields generated when fluid of higher density overlies lower-density fluid. The flow patterns cannot generally be measured or predicted in detail. This study develops basic understanding of overwash salinization processes impacting water supply on low-level islands, using a rare example of a monitored seawater overwash event that occurred in December 2008 at Roi-Namur Island in Kwajalein Atoll, Republic of the Marshall Islands, in which the salinity evolution of well water was measured. Due to typical lack of field data on such islands, a set of plausible alternative simulation-model descriptions of the hydrogeology and overwash event are created for analysis of the monitored salinization and recovery. Despite inability to know the 'true and complete' description of the event and the hydrogeology, the alternative models provide a range of possible evolutions of aquifer salinity. This allows identification of the controls on the rate and extent of initial salinization and of salinity persistence, which can be used as a basis for development of strategies to manage groundwater resources on low-lying islands.

A simple mathematical model of society collapse applied to Easter Island

NASA Astrophysics Data System (ADS)

Bologna, M.; Flores, J. C.

2008-02-01

In this paper we consider a mathematical model for the evolution and collapse of the Easter Island society. Based on historical reports, the available primary resources consisted almost exclusively in the trees, then we describe the inhabitants and the resources as an isolated dynamical system. A mathematical, and numerical, analysis about the Easter Island community collapse is performed. In particular, we analyze the critical values of the fundamental parameters and a demographic curve is presented. The technological parameter, quantifying the exploitation of the resources, is calculated and applied to the case of another extinguished civilization (Copán Maya) confirming the consistency of the adopted model.

Shaping Ge islands on Si(001) surfaces with misorientation angle.

PubMed

Persichetti, L; Sgarlata, A; Fanfoni, M; Balzarotti, A

2010-01-22

A complete description of Ge growth on vicinal Si(001) surfaces in the angular miscut range 0 degrees -8 degrees is presented. The key role of substrate vicinality is clarified from the very early stages of Ge deposition up to the nucleation of 3D islands. By a systematic scanning tunneling microscopy investigation we are able to explain the competition between step-flow growth and 2D nucleation and the progressive elongation of the 3D islands along the miscut direction [110]. Using finite element calculations, we find a strict correlation between the morphological evolution and the energetic factors which govern the {105} faceting at atomic scale.

Barrier island evolution and reworking by inlet migration along the Mississippi-Alabama gulf coast

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rucker, J.B.; Snowden, J.O.

1990-09-01

The five barrier islands along the Mississippi-Alabama coast are located 10 to 14 mi (16 to 23 km) offshore and separate Mississippi Sound from the Gulf of Mexico. The barrier islands in the chain are, from east to west: Dauphin Island, Petit Bois Island, Horn Island, Ship Island, and Cat Island. The islands are low sand bodies situated on a relatively broad Holocene sand platform that extends 70 mi (113 km) from Dauphin Island on the east to Cat Island on the west. The platform varies in thickness from 25 to 75 ft (7.6 to 23 m) and rests onmore » Holocene marine clays or on Pleistocene sediments. The barrier island chain predates the St. Bernard lobe of the Mississippi delta complex, which began to prograde about 3,000 years ago, and continued until it was abandoned approximately 1,500 years ago. In contrast to the other islands, Cat Island at the western down-drift end of the Mississippi-Alabama barrier island chain is characterized by more than 12 prominent east west-oriented progradational linear ridges. The ridge system of Cat Island is interpreted as a relict of an earlier stage in the life cycle of the barrier platform when there was a more robust littoral drift system and an abundant sediment supply During the Pre-St. Bernard Delta period of vigorous sedimentation, all of the islands in the barrier chain probably exhibited progradational ridges similar to those now found only on Cat Island. Presently, only vestigial traces of these progradational features remain on the islands to the east of Cat Island. Unlike Cat Island, which has been protected and preserved by the St. Bernard Delta, the other barrier islands have been modified and reworked during the past 1,500 years by processes of island and tidal inlet migration, accompanied by a general weakening of the littoral drift and a reduction of the available sediment supply.« less

Development of a real time magnetic island identification system for HL-2A tokamak.

PubMed

Chen, Chao; Sun, Shan; Ji, Xiaoquan; Yin, Zejie

2017-08-01

A novel real time magnetic island identification system for HL-2A is introduced. The identification method is based on the measurement of Mirnov probes and the equilibrium flux constructed by the equilibrium fit (EFIT) code. The system consists of an analog front board and a digital processing board connected by a shield cable. Four octal-channel analog-to-digital convertors are utilized for 100 KHz simultaneous sampling of all the probes, and the applications of PCI extensions for Instrumentation platform and reflective memory allow the system to receive EFIT results simultaneously. A high performance field programmable gate array (FPGA) is used to realize the real time identification algorithm. Based on the parallel and pipeline processing of the FPGA, the magnetic island structure can be identified with a cycle time of 3 ms during experiments.

Development of a real time magnetic island identification system for HL-2A tokamak

NASA Astrophysics Data System (ADS)

Chen, Chao; Sun, Shan; Ji, Xiaoquan; Yin, Zejie

2017-08-01

A novel real time magnetic island identification system for HL-2A is introduced. The identification method is based on the measurement of Mirnov probes and the equilibrium flux constructed by the equilibrium fit (EFIT) code. The system consists of an analog front board and a digital processing board connected by a shield cable. Four octal-channel analog-to-digital convertors are utilized for 100 KHz simultaneous sampling of all the probes, and the applications of PCI extensions for Instrumentation platform and reflective memory allow the system to receive EFIT results simultaneously. A high performance field programmable gate array (FPGA) is used to realize the real time identification algorithm. Based on the parallel and pipeline processing of the FPGA, the magnetic island structure can be identified with a cycle time of 3 ms during experiments.

Sea ice and surface water circulation, Alaskan continental shelf

NASA Technical Reports Server (NTRS)

Wright, F. F. (Principal Investigator); Sharma, G. D.; Burns, J. J.

1973-01-01

The author has identified the following significant results. Sediments contributed by the Copper River in the Gulf of Alaska are carried westward along the shore as a distinct plume. Oceanic water relatively poor in suspended material appears to intrude near Montague Island, and turbid water between Middleton Island and Kayak Island is the result of Ekman between transport. An anticlockwise surface water circulation is observed in this region. Ground truth data indicate striking similarity with ERTS-1 imagery obtained on October 12, 1972. Observations of ERTS-1 imagery reveal that various characteristics and distribution of sea ice in the Arctic Ocean can be easily studied. Formation of different types of sea ice and their movement is quite discrenible. Sea ice moves parallel to the cost in near shore areas and to the northerly direction away from the coast.

Depleted arc volcanism in the Alboran Sea and shoshonitic volcanism in Morocco: geochemical and isotopic constraints on Neogene tectonic processes

NASA Astrophysics Data System (ADS)

Gill, R. C. O.; Aparicio, A.; El Azzouzi, M.; Hernandez, J.; Thirlwall, M. F.; Bourgois, J.; Marriner, G. F.

2004-12-01

Samples of volcanic rocks from Alborán Island, the Alboran Sea floor and from the Gourougou volcanic centre in northern Morocco have been analyzed for major and trace elements and Sr-Nd isotopes to test current theories on the tectonic geodynamic evolution of the Alboran Sea. The Alborán Island samples are low-K tholeiitic basaltic andesites whose depleted contents of HFS elements (˜0.5×N-MORB), especially Nb (˜0.2×N-MORB), show marked geochemical parallels with volcanics from immature intra-oceanic arcs and back-arc basins. Several of the submarine samples have similar compositions, one showing low-Ca boninite affinity. 143Nd/ 144Nd ratios fall in the same range as many island-arc and back-arc basin samples, whereas 87Sr/ 86Sr ratios (on leached samples) are somewhat more radiogenic. Our data point to active subduction taking place beneath the Alboran region in Miocene times, and imply the presence of an associated back-arc spreading centre. Our sea floor suite includes a few more evolved dacite and rhyolite samples with ( 87Sr/ 86Sr) 0 up to 0.717 that probably represent varying degrees of crustal melting. The shoshonite and high-K basaltic andesite lavas from Gourougou have comparable normalized incompatible-element enrichment diagrams and Ce/Y ratios to shoshonitic volcanics from oceanic island arcs, though they have less pronounced Nb deficits. They are much less LIL- and LREE-enriched than continental arc analogues and post-collisional shoshonites from Tibet. The magmas probably originated by melting in subcontinental lithospheric mantle that had experienced negligible subduction input. Sr-Nd isotope compositions point to significant crustal contamination which appears to account for the small Nb anomalies. The unmistakable supra-subduction zone (SSZ) signature shown by our Alboran basalts and basaltic andesite samples refutes geodynamic models that attribute all Neogene volcanism in the Alboran domain to decompression melting of upwelling asthenosphere arising from convective thinning of over-thickened lithosphere. Our data support recent models in which subsidence is caused by westward rollback of an eastward-dipping subduction zone beneath the westernmost Mediterranean. Moreover, severance of the lithosphere at the edges of the rolling-back slab provides opportunities for locally melting lithospheric mantle, providing a possible explanation for the shoshonitic volcanism seen in northern Morocco and more sporadically in SE Spain.

Analysis of current-driven oscillatory dynamics of single-layer homoepitaxial islands on crystalline conducting substrates

NASA Astrophysics Data System (ADS)

Dasgupta, Dwaipayan; Kumar, Ashish; Maroudas, Dimitrios

2018-03-01

We report results of a systematic study on the complex oscillatory current-driven dynamics of single-layer homoepitaxial islands on crystalline substrate surfaces and the dependence of this driven dynamical behavior on important physical parameters, including island size, substrate surface orientation, and direction of externally applied electric field. The analysis is based on a nonlinear model of driven island edge morphological evolution that accounts for curvature-driven edge diffusion, edge electromigration, and edge diffusional anisotropy. Using a linear theory of island edge morphological stability, we calculate a critical island size at which the island's equilibrium edge shape becomes unstable, which sets a lower bound for the onset of time-periodic oscillatory dynamical response. Using direct dynamical simulations, we study the edge morphological dynamics of current-driven single-layer islands at larger-than-critical size, and determine the actual island size at which the migrating islands undergo a transition from steady to time-periodic asymptotic states through a subcritical Hopf bifurcation. At the highest symmetry of diffusional anisotropy examined, on {111} surfaces of face-centered cubic crystalline substrates, we find that more complex stable oscillatory states can be reached through period-doubling bifurcation at island sizes larger than those at the Hopf points. We characterize in detail the island morphology and dynamical response at the stable time-periodic asymptotic states, determine the range of stability of these oscillatory states terminated by island breakup, and explain the morphological features of the stable oscillating islands on the basis of linear stability theory.

Demographic history of a recent invasion of house mice on the isolated Island of Gough.

PubMed

Gray, Melissa M; Wegmann, Daniel; Haasl, Ryan J; White, Michael A; Gabriel, Sofia I; Searle, Jeremy B; Cuthbert, Richard J; Ryan, Peter G; Payseur, Bret A

2014-04-01

Island populations provide natural laboratories for studying key contributors to evolutionary change, including natural selection, population size and the colonization of new environments. The demographic histories of island populations can be reconstructed from patterns of genetic diversity. House mice (Mus musculus) inhabit islands throughout the globe, making them an attractive system for studying island colonization from a genetic perspective. Gough Island, in the central South Atlantic Ocean, is one of the remotest islands in the world. House mice were introduced to Gough Island by sealers during the 19th century and display unusual phenotypes, including exceptionally large body size and carnivorous feeding behaviour. We describe genetic variation in Gough Island mice using mitochondrial sequences, nuclear sequences and microsatellites. Phylogenetic analysis of mitochondrial sequences suggested that Gough Island mice belong to Mus musculus domesticus, with the maternal lineage possibly originating in England or France. Cluster analyses of microsatellites revealed genetic membership for Gough Island mice in multiple coastal populations in Western Europe, suggesting admixed ancestry. Gough Island mice showed substantial reductions in mitochondrial and nuclear sequence variation and weak reductions in microsatellite diversity compared with Western European populations, consistent with a population bottleneck. Approximate Bayesian computation (ABC) estimated that mice recently colonized Gough Island (~100 years ago) and experienced a 98% reduction in population size followed by a rapid expansion. Our results indicate that the unusual phenotypes of Gough Island mice evolved rapidly, positioning these mice as useful models for understanding rapid phenotypic evolution. © 2014 John Wiley & Sons Ltd.

Characterizing barrier-island response to storm and human impact: a century of observations from Breton Island, Louisiana

NASA Astrophysics Data System (ADS)

Flocks, J. G.; Terrano, J.; Dalyander, S.

2016-12-01

Breton Island, a barrier-island located adjacent to the Mississippi River Delta in the Northern Gulf of Mexico, is recognized as a globally important bird habitat, hosting one of largest pelican nesting colonies in Louisiana. Over the past century extensive loss of island acreage has been documented, but the history of change has not been linked to physical drivers. In this study, high-resolution topo-bathymetric lidar and acoustic bathymetry are combined to create digital elevation models (DEMs) that are compared to historical datasets extending to the late 1800s. This analysis reveals shoreline and seafloor change patterns, most notably that island area has decreased by 85% since the early 1900s. This loss is attributed to a decrease in littoral sediment delivery across a shipping channel dredged adjacent to the island in the 1950s and an increase in storm frequency and intensity since the 1990s. In contrast to this long-term decline, island area has doubled in size since 2005, corresponding to a reduction in both storm and dredging activity. The study links island change to erosional processes and demonstrates the influence of short-term change events, both natural and man-made, on long-term barrier-island evolution. Because Breton Island itself has not been altered appreciably by restoration activities, these observations can be applied to natural barrier island systems elsewhere where sufficient monitoring data is not available.

A neoclassical drift-magnetohydrodynamical fluid model of the interaction of a magnetic island chain with a resonant error-field in a high temperature tokamak plasma

NASA Astrophysics Data System (ADS)

Fitzpatrick, Richard

2018-04-01

A two-fluid, neoclassical theory of the interaction of a single magnetic island chain with a resonant error-field in a quasi-cylindrical, low-β, tokamak plasma is presented. The plasmas typically found in large hot tokamaks lie in the so-called weak neoclassical flow-damping regime in which the neoclassical ion stress tensor is not the dominant term in the ion parallel equation of motion. Nevertheless, flow-damping in such plasmas dominates ion perpendicular viscosity, and is largely responsible for determining the phase velocity of a freely rotating island chain (which is in the ion diamagnetic direction relative to the local E × B frame at the rational surface). The critical vacuum island width required to lock the island chain is mostly determined by the ion neoclassical poloidal flow damping rate at the rational surface. The stabilizing effect of the average field-line curvature, as well as the destabilizing effect of the perturbed bootstrap current, is the same for a freely rotating, a non-uniformly rotating, and a locked island chain. The destabilizing effect of the error-field averages to zero when the chain is rotating and only manifests itself when the chain locks. The perturbed ion polarization current has a small destabilizing effect on a freely rotating island chain, but a large destabilizing effect on both a non-uniformly rotating and a locked island chain. This behavior may account for the experimentally observed fact that locked island chains are much more unstable than corresponding freely rotating chains.

Fluvial islands: First stage of development from nonmigrating (forced) bars and woody-vegetation interactions

NASA Astrophysics Data System (ADS)

Wintenberger, Coraline L.; Rodrigues, Stéphane; Bréhéret, Jean-Gabriel; Villar, Marc

2015-10-01

Fluvial islands can develop from the channel bed by interactions between pioneer trees and bars. Although vegetation recruitment and survival is possible on all bar types, it is easier for trees to survive on nonmigrating bars developed from a change in channel geometry or to the presence of a steady perturbation. This field study details the first stages of development of a vegetated mid-channel, nonmigrating (or forced) bar and its evolution toward an island form. Over six years, analysis of bed topographical changes, vegetation density and roughness, scour and fill depths, sediment grain size and architecture, and excess bed shear stress highlighted a specific signature of trees on topography and grain size segregation. Two depositional processes combining the formation of obstacle marks and upstream-shifting deposition of sediments led to the vertical accretion of the vegetated bar. During the first stage of the bar accretion, bedload sediment supply coming from surrounding channels during floods was identified as a key process modulated by the presence of woody vegetation and a deflection effect induced by the preexisting topography. Grain size segregation between vegetated and bare areas was also highlighted and interpreted as an important process affecting the development of surrounding channels and the degree of disconnection (and hence the speed of development) of a growing island. The heterogeneity of bedload supply can explain why sediment deposition and density of trees are not strictly related. A general conceptual model detailing the first stages of evolution from a bar to an established island is proposed for relatively large lowland rivers.

Persistent shoreline shape induced from offshore geologic framework: Effects of shoreface connected ridges

USGS Publications Warehouse

Safak, Ilgar; List, Jeffrey; Warner, John C.; Schwab, William C.

2017-01-01

Mechanisms relating offshore geologic framework to shoreline evolution are determined through geologic investigations, oceanographic deployments, and numerical modeling. Analysis of shoreline positions from the past 50 years along Fire Island, New York, a 50 km long barrier island, demonstrates a persistent undulating shape along the western half of the island. The shelf offshore of these persistent undulations is characterized with shoreface-connected sand ridges (SFCR) of a similar alongshore length scale, leading to a hypothesis that the ridges control the shoreline shape through the modification of flow. To evaluate this, a hydrodynamic model was configured to start with the US East Coast and scale down to resolve the Fire Island nearshore. The model was validated using observations along western Fire Island and buoy data, and used to compute waves, currents and sediment fluxes. To isolate the influence of the SFCR on the generation of the persistent shoreline shape, simulations were performed with a linearized nearshore bathymetry to remove alongshore transport gradients associated with shoreline shape. The model accurately predicts the scale and variation of the alongshore transport that would generate the persistent shoreline undulations. In one location, however, the ridge crest connects to the nearshore and leads to an offshore-directed transport that produces a difference in the shoreline shape. This qualitatively supports the hypothesized effect of cross-shore fluxes on coastal evolution. Alongshore flows in the nearshore during a representative storm are driven by wave breaking, vortex force, advection and pressure gradient, all of which are affected by the SFCR.

mtDNA from fossils reveals a radiation of Hawaiian geese recently derived from the Canada goose (Branta canadensis)

PubMed Central

Paxinos, Ellen E.; James, Helen F.; Olson, Storrs L.; Sorenson, Michael D.; Jackson, Jennifer; Fleischer, Robert C.

2002-01-01

Phylogenetic analysis of 1.35 kb of mtDNA sequence from fossils revealed a previously unknown radiation of Hawaiian geese, of which only one representative remains alive (the endangered Hawaiian goose or nene, Branta sandvicensis). This radiation is nested phylogenetically within a living species, the Canada goose (Branta canadensis) and is related most closely to the large-bodied lineage within that species. The barnacle goose (Branta leucopsis) is also nested within the Canada goose species and is related most closely to the small-bodied lineage of Canada geese. The peripheral isolation of the barnacle goose in the Palearctic apparently allowed the evolution of its distinctive plumage pattern, whereas the two Nearctic lineages of Canada geese share a primitive plumage pattern. The Hawaiian lineage of Canada geese diverged more dramatically, splitting into at least three species that differ in body size, body proportions, and flight ability. One fossil species, limited to the island of Hawaii, was related closely to the nene but was over four times larger, flightless, heavy-bodied and had a much more robust cranium. Application of a rate calibration to levels of DNA divergence suggests that this species evolved on the island of Hawaii in less than 500,000 years. This date is consistent with the potassium/argon-based age of the island of Hawaii of 430,000–500,000 years. The giant Hawaii goose resembles the moa-nalos, a group of massive, extinct, flightless ducks that lived on older Hawaiian Islands and thus is an example of convergent evolution of similar morphologies in island ecosystems. PMID:11818543

Will Coral Islands Maintain Their Growth over the Next Century? A Deterministic Model of Sediment Availability at Lady Elliot Island, Great Barrier Reef

PubMed Central

Hamylton, Sarah

2014-01-01

A geomorphic assessment of reef system calcification is conducted for past (3200 Ka to present), present and future (2010–2100) time periods. Reef platform sediment production is estimated at 569 m3 yr−1 using rate laws that express gross community carbonate production as a function of seawater aragonite saturation, community composition and rugosity and incorporating estimates of carbonate removal from the reef system. Key carbonate producers including hard coral, crustose coralline algae and Halimeda are mapped accurately (mean R2 = 0.81). Community net production estimates correspond closely to independent census-based estimates made in-situ (R2 = 0.86). Reef-scale outputs are compared with historic rates of production generated from (i) radiocarbon evidence of island deposition initiation around 3200 years ago, and (ii) island volume calculated from a high resolution island digital elevation model. Contemporary carbonate production rates appear to be remarkably similar to historical values of 573 m3 yr−1. Anticipated future seawater chemistry parameters associated with an RCP8.5 emissions scenario are employed to model rates of net community calcification for the period 2000–2100 on the basis of an inorganic aragonite precipitation law, under the assumption of constant benthic community character. Simulations indicate that carbonate production will decrease linearly to a level of 118 m3 yr−1 by 2100 and that by 2150 aragonite saturation levels may no longer support the positive budgetary status necessary to sustain island accretion. Novel aspects of this assessment include the development of rate law parameters to realistically represent the variable composition of coral reef benthic carbonate producers, incorporation of three dimensional rugosity of the entire reef platform and the coupling of model outputs with both historical radiocarbon dating evidence and forward hydrochemical projections to conduct an assessment of island evolution through time. By combining several lines of evidence in a deterministic manner, an assessment of changes in carbonate production is carried out that has tangible geomorphic implications for sediment availability and associated island evolution. PMID:24759700

Will Coral Islands maintain their growth over the next century? A deterministic model of sediment availability at Lady Elliot Island, Great Barrier Reef.

PubMed

Hamylton, Sarah

2014-01-01

A geomorphic assessment of reef system calcification is conducted for past (3200 Ka to present), present and future (2010-2100) time periods. Reef platform sediment production is estimated at 569 m3 yr-1 using rate laws that express gross community carbonate production as a function of seawater aragonite saturation, community composition and rugosity and incorporating estimates of carbonate removal from the reef system. Key carbonate producers including hard coral, crustose coralline algae and Halimeda are mapped accurately (mean R2 = 0.81). Community net production estimates correspond closely to independent census-based estimates made in-situ (R2 = 0.86). Reef-scale outputs are compared with historic rates of production generated from (i) radiocarbon evidence of island deposition initiation around 3200 years ago, and (ii) island volume calculated from a high resolution island digital elevation model. Contemporary carbonate production rates appear to be remarkably similar to historical values of 573 m3 yr-1. Anticipated future seawater chemistry parameters associated with an RCP8.5 emissions scenario are employed to model rates of net community calcification for the period 2000-2100 on the basis of an inorganic aragonite precipitation law, under the assumption of constant benthic community character. Simulations indicate that carbonate production will decrease linearly to a level of 118 m3 yr-1 by 2100 and that by 2150 aragonite saturation levels may no longer support the positive budgetary status necessary to sustain island accretion. Novel aspects of this assessment include the development of rate law parameters to realistically represent the variable composition of coral reef benthic carbonate producers, incorporation of three dimensional rugosity of the entire reef platform and the coupling of model outputs with both historical radiocarbon dating evidence and forward hydrochemical projections to conduct an assessment of island evolution through time. By combining several lines of evidence in a deterministic manner, an assessment of changes in carbonate production is carried out that has tangible geomorphic implications for sediment availability and associated island evolution.

The Effect of a Guide Field on the Structures of Magnetic Islands: 2D PIC Simulations

NASA Astrophysics Data System (ADS)

Huang, C.; Lu, Q.; Lu, S.; Wang, P.; Wang, S.

2014-12-01

Magnetic island plays an important role in magnetic reconnection. Using a series of 2D PIC simulations, we investigate the magnetic structures of a magnetic island formed during multiple X-line magnetic reconnection, considering the effects of the guide field in symmetric and asymmetric current sheets. In a symmetric current sheet, the current in the direction forms a tripolar structure inside a magnetic island during anti-parallel reconnection, which results in a quadrupole structure of the out-of-plane magnetic field. With the increase of the guide field, the symmetry of both the current system and out-of-plane magnetic field inside the magnetic island is distorted. When the guide field is sufficiently strong, the current forms a ring along the magnetic field lines inside magnetic island. At the same time, the current carried by the energetic electrons accelerated in the vicinity of the X lines forms another ring at the edge of the magnetic island. Such a dual-ring current system enhance the out-of-plane magnetic field inside the magnetic island with a dip in the center of the magnetic island. In an asymmetric current sheet, when there is no guide field, electrons flows toward the X lines along the separatrices from the side with a higher density, and are then directed away from the X lines along the separatrices to the side with a lower density. The formed current results in the enhancement of the out-of-plane magnetic field at one end of the magnetic island, and the attenuation at the other end. With the increase of the guide field, the structures of both the current system and the out-of-plane magnetic field are distorted.

The confounding effects of hybridization on phylogenetic estimation in the New Zealand cicada genus Kikihia.

PubMed

Banker, Sarah E; Wade, Elizabeth J; Simon, Chris

2017-11-01

Phylogenetic studies of multiple independently inherited nuclear genes considered in combination with patterns of inheritance of organelle DNA have provided considerable insight into the history of species evolution. In particular, investigations of cicadas in the New Zealand genus Kikihia have identified interesting cases where mitochondrial DNA (mtDNA) crosses species boundaries in some species pairs but not others. Previous phylogenetic studies focusing on mtDNA largely corroborated Kikihia species groups identified by song, morphology and ecology with the exception of a unique South Island mitochondrial haplotype clade-the Westlandica group. This newly identified group consists of diverse taxa previously classified as belonging to three different sub-generic clades. We sequenced five nuclear loci from multiple individuals from every species of Kikihia to assess the nuclear gene concordance for this newly-identified mtDNA lineage. Bayes Factor analysis of the constrained phylogeny suggests some support for the mtDNA-based hypotheses, despite the fact that neither concatenation nor multiple species tree methods resolve the Westlandica group as monophyletic. The nuclear analyses suggest a geographic distinction between clearly defined monophyletic North Island clades and unresolved South Island clades. We suggest that more extreme habitat modification on South Island during the Pliocene and Pleistocene resulted in secondary contact and hybridization between species pairs and a series of mitochondrial capture events followed by subsequent lineage evolution. Copyright © 2017 Elsevier Inc. All rights reserved.

The relative roles of cultural drift and acoustic adaptation in shaping syllable repertoires of island bird populations change with time since colonization.

PubMed

Potvin, Dominique A; Clegg, Sonya M

2015-02-01

In birds, song divergence often precedes and facilitates divergence of other traits. We assessed the relative roles of cultural drift, innovation, and acoustic adaptation in divergence of island bird dialects, using silvereyes (Zosterops lateralis). In recently colonized populations, syllable diversity was not significantly lower than source populations, shared syllables between populations decreased with increasing number of founder events, and dialect variation displayed contributions from both habitat features and drift. The breadth of multivariate space occupied by recently colonized Z. l. lateralis populations was comparable to evolutionarily old forms that have diverged over thousands to hundreds of thousands of years. In evolutionarily old subspecies, syllable diversity was comparable to the mainland and the amount of variation in syllable composition explained by habitat features increased by two- to threefold compared to recently colonized populations. Together these results suggest that cultural drift influences syllable repertoires in recently colonized populations, but innovation likely counters syllable loss from colonization. In evolutionarily older populations, the influence of acoustic adaptation increases, possibly favoring a high diversity of syllables. These results suggest that the relative importance of cultural drift and acoustic adaptation changes with time since colonization in island bird populations, highlighting the value of considering multiple mechanisms and timescale of divergence when investigating island song divergence. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

Island biogeography effects on microbial evolution may contribute to Crohn's disease.

PubMed

Johnson, Mac A; Winquist, Raymond J

2011-12-15

Inflammatory bowel diseases (IBDs), such as Crohn's disease (CD), involve a poorly understood and complex immune response to both the biota of the human gut and the gut itself. The role of the gut biota in human health has been ill defined and attitudes toward the intestinal flora have ranged from judging them largely irrelevant to declaring them a human organ system. A better way to view the intestinal flora is as a group of evolutionarily self-interested species that form large, potentially interbreeding populations that utilize human beings as a series of semi-isolated habitats, like islands in an archipelago. Here we propose that the imposition of modern sanitation and hygiene standards has drastically attenuated the connection between the "islands" inhabited by the gut flora, and that existing work drawn from evolutionary biology studies of island ecosystems, rather than medicine, predicts that the evolution of gut flora should now be pushed toward limited-dispersion forms of intestinal microorganisms - a proposition borne out by the discovery of so-called "adherent invasive Escherichia coli." This pathogenic variant of the gut bacterium E. coli clings to and invades the intestinal epithelium and has been implicated in CD. Gut flora and diseases of the gut should arguably be studied as ecology as much as medicine, and treated within this context. Copyright © 2011 Elsevier Inc. All rights reserved.

A Balanced Mixture of Antagonistic Pressures Promotes the Evolution of Parallel Movement

NASA Astrophysics Data System (ADS)

Demšar, Jure; Štrumbelj, Erik; Lebar Bajec, Iztok

2016-12-01

A common hypothesis about the origins of collective behaviour suggests that animals might live and move in groups to increase their chances of surviving predator attacks. This hypothesis is supported by several studies that use computational models to simulate natural evolution. These studies, however, either tune an ad-hoc model to ‘reproduce’ collective behaviour, or concentrate on a single type of predation pressure, or infer the emergence of collective behaviour from an increase in prey density. In nature, prey are often targeted by multiple predator species simultaneously and this might have played a pivotal role in the evolution of collective behaviour. We expand on previous research by using an evolutionary rule-based system to simulate the evolution of prey behaviour when prey are subject to multiple simultaneous predation pressures. We analyse the evolved behaviour via prey density, polarization, and angular momentum. Our results suggest that a mixture of antagonistic external pressures that simultaneously steer prey towards grouping and dispersing might be required for prey individuals to evolve dynamic parallel movement.

Glaciotectonic deformation associated with the Orient Point-Fishers Island moraine, westernmost Block Island Sound: further evidence of readvance of the Laurentide ice sheet

USGS Publications Warehouse

Poppe, Lawrence J.; Oldale, Robert N.; Foster, David S.; Smith, Shepard M.

2012-01-01

High-resolution seismic-reflection profiles collected across pro-glacial outwash deposits adjacent to the circa 18 ka b.p. Orient Point–Fishers Island end moraine segment in westernmost Block Island Sound reveal extensive deformation. A rhythmic seismic facies indicates the host outwash deposits are composed of fine-grained glaciolacustrine sediments. The deformation is variably brittle and ductile, but predominantly compressive in nature. Brittle deformation includes reverse faults and thrust faults that strike parallel to the moraine, and thrust sheets that extend from beneath the moraine. Ductile deformation includes folded sediments that overlie undisturbed deposits, showing that they are not drape features. Other seismic evidence for compression along the ice front consists of undisturbed glaciolacustrine strata that dip back toward and underneath the moraine, and angular unconformities on the sea floor where deformed sediments extend above the surrounding undisturbed correlative strata. Together, these ice-marginal glaciotectonic features indicate that the Orient Point–Fishers Island moraine marks a significant readvance of the Laurentide ice sheet, consistent with existing knowledge for neighboring coeval moraines, and not simply a stillstand as previously reported.

Clouds off the Aleutian Islands

NASA Image and Video Library

2017-12-08

March 23, 2010 - Clouds off the Aleutian Islands Interesting cloud patterns were visible over the Aleutian Islands in this image, captured by the MODIS on the Aqua satellite on March 14, 2010. Turbulence, caused by the wind passing over the highest points of the islands, is producing the pronounced eddies that swirl the clouds into a pattern called a vortex "street". In this image, the clouds have also aligned in parallel rows or streets. Cloud streets form when low-level winds move between and over obstacles causing the clouds to line up into rows (much like streets) that match the direction of the winds. At the point where the clouds first form streets, they're very narrow and well-defined. But as they age, they lose their definition, and begin to spread out and rejoin each other into a larger cloud mass. The Aleutians are a chain of islands that extend from Alaska toward the Kamchatka Peninsula in Russia. For more information related to this image go to: modis.gsfc.nasa.gov/gallery/individual.php?db_date=2010-0... For more information about Goddard Space Flight Center go here: www.nasa.gov/centers/goddard/home/index.html

Parallel algorithms for islanded microgrid with photovoltaic and energy storage systems planning optimization problem: Material selection and quantity demand optimization

NASA Astrophysics Data System (ADS)

Cao, Yang; Liu, Chun; Huang, Yuehui; Wang, Tieqiang; Sun, Chenjun; Yuan, Yue; Zhang, Xinsong; Wu, Shuyun

2017-02-01

With the development of roof photovoltaic power (PV) generation technology and the increasingly urgent need to improve supply reliability levels in remote areas, islanded microgrid with photovoltaic and energy storage systems (IMPE) is developing rapidly. The high costs of photovoltaic panel material and energy storage battery material have become the primary factors that hinder the development of IMPE. The advantages and disadvantages of different types of photovoltaic panel materials and energy storage battery materials are analyzed in this paper, and guidance is provided on material selection for IMPE planners. The time sequential simulation method is applied to optimize material demands of the IMPE. The model is solved by parallel algorithms that are provided by a commercial solver named CPLEX. Finally, to verify the model, an actual IMPE is selected as a case system. Simulation results on the case system indicate that the optimization model and corresponding algorithm is feasible. Guidance for material selection and quantity demand for IMPEs in remote areas is provided by this method.

Trace element evaluation of a suite of rocks from Reunion Island, Indian Ocean

USGS Publications Warehouse

Zielinski, R.A.

1975-01-01

Reunion Island consists of an olivine-basalt shield capped by a series of flows and intrusives ranging from hawaiite through trachyte. Eleven rocks representing the total compositional sequence have been analyzed for U, Th and REE. Eight of the rocks (group 1) have positive-slope, parallel, chondrite-normalized REE fractionation patterns. Using a computer model, the major element compositions of group 1 whole rocks and observed phenocrysts were used to predict the crystallization histories of increasingly residual liquids, and allowed semi-quantitative verification of origin by fractional crystallization of the olivine-basalt parent magma. Results were combined with mineral-liquid distribution coefficient data to predict trace element abundances, and existing data on Cr, Ni, Sr and Ba were also successfully incorporated in the model. The remaining three rocks (group 2) have nonuniform positive-slope REE fractionation patterns not parallel to group 1 patterns. Rare earth fractionation in a syenite is explained by partial melting of a source rich in clinopyroxene and/or hornblende. The other two rocks of group 2 are explained as hybrids resulting from mixing of syenite and magmas of group 1. ?? 1975.

Evidence for Spiral Magnetic Structures at the Magnetopause: A Case for Multiple Reconnections

NASA Technical Reports Server (NTRS)

Vaisberg, O. L.; Smirnov, V. N.; Avanov, L. A.; Moore, T. E.

2003-01-01

We analyze plasma structures within the low latitude boundary layer (LLBL) observed by the lnterball Tail spacecraft under southward interplanetary magnetic field. Ion velocity distributions observed in the LLBL under these conditions fall into three categories: (a) D-shaped distributions, (b) ion velocity distributions consisting of two counterstreaming magnetosheath-type, and (c) distributions with three components where one of them has nearly zero velocity parallel to magnetic field (VlI), while the other two are counter-streaming components. D-shaped ion velocity distributions (a) correspond to magnetosheath plasma injections into reconnected flux tubes, as influenced by spacecraft location relative to the reconnection site. Simultaneous counter-streaming injections (b) suggest multiple reconnections. Three-component ion velocity distributions (c) and theii evolution with decreasing number density in the LLBL are consistent v behavior expected on long spiral flux tube islands at the magnetopaus as has been proposed and found to occur in magnetopause simulatior We interpret these distributions as a natural consequence of the formation of spiral magnetic flux tubes consisting of a mixture of alternating segments originating from the magnetosheath and magnetospheric plasmas. We suggest that multiple reconnections pla! an important role in the formation of the LLBL.

Microstructure and Interfacial Reactions During Vacuum Brazing of Stainless Steel to Titanium Using Ag-28 pct Cu Alloy

NASA Astrophysics Data System (ADS)

Laik, A.; Shirzadi, A. A.; Sharma, G.; Tewari, R.; Jayakumar, T.; Dey, G. K.

2015-02-01

Microstructural evolution and interfacial reactions during vacuum brazing of grade-2 Ti and 304L-type stainless steel (SS) using eutectic alloy Ag-28 wt pct Cu were investigated. A thin Ni-depleted zone of -Fe(Cr, Ni) solid solution formed on the SS-side of the braze zone (BZ). Cu from the braze alloy, in combination with the dissolved Fe and Ti from the base materials, formed a layer of ternary compound , adjacent to Ti in the BZ. In addition, four binary intermetallic compounds, CuTi, CuTi, CuTi and CuTi formed as parallel contiguous layers in the BZ. The unreacted Ag solidified as islands within the layers of CuTi and CuTi. Formation of an amorphous phase at certain locations in the BZ could be revealed. The -Ti(Cu) layer, formed due to diffusion of Cu into Ti-based material, transformed to an -Ti + CuTi eutectoid with lamellar morphology. Tensile test showed that the brazed joints had strength of 112 MPa and failed at the BZ. The possible sequence of events that led to the final microstructure and the mode of failure of these joints were delineated.

Archive of digital chirp subbottom profile data collected during USGS cruise 11BIM01 Offshore of the Chandeleur Islands, Louisiana, June 2011

USGS Publications Warehouse

Forde, Arnell S.; Dadisman, Shawn V.; Miselis, Jennifer L.; Flocks, James G.; Wiese, Dana S.

2013-01-01

From June 3 to 13, 2011, the U.S. Geological Survey conducted a geophysical survey to investigate the geologic controls on barrier island framework and long-term sediment transport along the oil spill mitigation sand berm constructed at the north end and just offshore of the Chandeleur Islands, LA. This effort is part of a broader USGS study, which seeks to better understand barrier island evolution over medium time scales (months to years). This report serves as an archive of unprocessed digital chirp subbottom data, trackline maps, navigation files, Geographic Information System (GIS) files, Field Activity Collection System (FACS) logs, and formal Federal Geographic Data Committee (FGDC) metadata. Gained (showing a relative increase in signal amplitude) digital images of the seismic profiles are also provided.

A methodology for modeling barrier island storm-impact scenarios

USGS Publications Warehouse

Mickey, Rangley C.; Long, Joseph W.; Plant, Nathaniel G.; Thompson, David M.; Dalyander, P. Soupy

2017-02-16

A methodology for developing a representative set of storm scenarios based on historical wave buoy and tide gauge data for a region at the Chandeleur Islands, Louisiana, was developed by the U.S. Geological Survey. The total water level was calculated for a 10-year period and analyzed against existing topographic data to identify when storm-induced wave action would affect island morphology. These events were categorized on the basis of the threshold of total water level and duration to create a set of storm scenarios that were simulated, using a high-fidelity, process-based, morphologic evolution model, on an idealized digital elevation model of the Chandeleur Islands. The simulated morphological changes resulting from these scenarios provide a range of impacts that can help coastal managers determine resiliency of proposed or existing coastal structures and identify vulnerable areas within those structures.

Modeling Holocene Barrier Island Morphodynamics and Potential Future Response to Sea- Level Rise, Outer Banks, North Carolina

NASA Astrophysics Data System (ADS)

Moore, L. J.; List, J. H.; Williams, S. J.; Stolper, D.

2006-12-01

A morphological-behavior model, GEOMBEST, which simulates the evolution of coastal morphology and stratigraphy resulting from changes in sea level and sediment supply provides insight into how barriers evolve over time scales ranging from decades to millenia. The model is based upon behavior rules originating from "Bruun rule" concepts, with additional parameters to allow simulation of more complex real-world scenarios. Morphological evolution in the model is driven by disequilibrium between the shoreface and a user-specified theoretical equilibrium profile that maintains its vertical position relative to sea level. As sea level continues rising to an estimated 48 cm above current MSL by AD 2100 (IPCC 2001) and hurricanes of potentially greater intensity impact the coast, barrier islands will respond either by transgressing across underlying strata or by disintegrating and ultimately submerging. Recent studies suggest that some barriers along the U.S. East Coast will break up and become submerged within decades. Other studies show that barriers in Louisiana have already submerged while others are in the process of narrowing in place and submerging. Several factors determine barrier island response to sea-level rise. These include initial topography and morphology of the barrier, underlying geologic framework, availability and supply of sediment, rate of sea-level rise, frequency and intensity of coastal storms, and anthropogenic modifications to the coast. Sensitivity analyses conducted in GEOMBEST suggest that of these factors, barrier-island response is most sensitive to the rate of sea-level rise. The Holocene evolution of the Outer Banks and potential future responses to sea-level rise are explored for a 25-km stretch of coast between Rodanthe and Cape Hatteras, NC using GEOMBEST. An 8500-year hindcast simulation for the study area reproduces closely the morphology and stratigraphy of the modern barrier with approximately 5 x 109 m3 excavated from the Pleistocene substrate, liberating a volume of material sufficient to construct Diamond Shoals. This hindcast simulation serves as the basis for forward simulations of potential future barrier island evolution. A series of model runs based on the low- (0.09 m), mid- (0.48 m) and upper- (0.88 m) range of IPCC (2001) estimates for sea-level rise by the year 2100, suggest the barrier would migrate at rates of approximately 2, 6 and 10 m/yr, respectively. The latter two results would represent an increase over modern long-term erosion rates in the study area, which serve as a proxy for migration rates. Model simulations of barrier response to 4 and 6 m of sea-level rise by AD 2100 (Overpeck et al., 2006), result in model-generated migration rates of 43 and 68 m/yr, respectively. These rates far exceed the highest average long-term barrier island erosion rates observed today along the Louisiana Coast where the Chandeleur Islands disintegrated in response to Hurricane Katrina. If observations in Louisiana can be applied to barrier islands in North Carolina, then we can expect the Outer Banks to become vulnerable to disintegration when migration rates reach approximately 15-20 m/yr. The five forward simulations for the study area suggest rates in this range may be achieved in the Outer Banks if sea-level rise by AD 2100 exceeds IPCC (2001) estimates.

Characteristics Associated with the Madden-Julian Oscillation at Manus Island

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deng, Liping; McFarlane, Sally A.; Flaherty, Julia E.

2013-05-15

Ground-based high temporal and vertical resolution datasets from 2002 to 2008 of observations at the Atmospheric Radiation Measurement (ARM) Tropical Western Pacific (TWP) site on Manus Island, Papua New Guinea are used to examine the evolution of clouds and rainfall associated with the MJO life cycle. A composite MJO event is developed based on the NOAA MJO Index 4 using 13 events. The analysis shows that the cloud evolution during the composited MJO life cycle depicts a two-phase structure consisting of a development phase and a mature phase. During the development phase, congestus is the most important cloud type; duringmore » the mature phase, deep convection is the dominant cloud type. Consistent with this two-phase structure, the heavy rainfall frequency also shows a two-peak structure during the MJO life cycle. Light rainfall does not show a clear relation to the MJO life cycle, but shows variability on shorter time scales. From the development phase to the mature phase, the MJO structure shifts from the Type I to Type II structure, showing a different phase relationship between convection and dynamic fields (or wave motion) in the development and mature phases. During the shift, mid-level clouds play an important role in moving moisture to the mid-troposphere and preparing the atmosphere for the following deep convection. The discharge-recharge theory explains some of observed features of the MJO evolution at the ARM TWP Manus Island site.« less

New insights into the stratigraphic, paleogeographic and tectonic evolution and petroleum potential of Kerkennah Islands, Eastern Tunisia

NASA Astrophysics Data System (ADS)

Elfessi, Maroua

2017-01-01

This work presents general insights into the stratigraphic and paleogeographic evolution as well as the structural architecture and the petroleum potential of Kerkennah Islands, located in the Eastern Tunisia Foreland, from Cenomanian to Pliocene times. Available data from twenty wells mostly drilled in Cercina and Chergui fields are used to establish three lithostratigraphic correlations as well as isopach and isobath maps in order to point out thickness and depth variations of different geological formations present within our study area; in addition to a synthetic log and isoporosity map of the main carbonate reservoir (the nummulites enriched Reineche Member). The integrated geological study reveals relatively condensed but generally continuous sedimentation and a rugged substrate with horsts, grabens and tilted blocks due to the initiation and the individualization of Kerkennah arch throughout the studied geological times. Furthermore, a relationship was highlighted between the evolution of our study zone and those of Sirt basin, Western Mediterranean Sea and Pelagian troughs; this relationship is due to the outstanding location of Kerkennah Islands. The main Bou Dabbous source rock is thicker and more mature within the central-east of the Gulf of Gabes indicating therefore the southeast charge of Reineche reservoir which shows NW-SE trending tilted block system surrounded by normal faults representing the hydrocarbon migration pathways. Besides, the thick Oligo-Miocene formations deposited during the collapse of the Pelagian block caused the maturation of the Ypresian source rock, while the Pliocene unconformity allowed basin inversion and hydrocarbon migration.

Mosaic patterns of diversification dynamics following the colonization of Melanesian islands.

PubMed

Toussaint, Emmanuel F A; Hendrich, Lars; Shaverdo, Helena; Balke, Michael

2015-11-03

The fate of newly settled dispersers on freshly colonized oceanic islands is a central theme of island biogeography. The emergence of increasingly sophisticated methods of macroevolutionary pattern inference paves the way for a deeper understanding of the mechanisms governing these diversification patterns on lineages following their colonization of oceanic islands. Here we infer a comprehensive molecular phylogeny for Melanesian Exocelina diving beetles. Recent methods in historical biogeography and diversification rate inference were then used to investigate the evolution of these insects in space and time. An Australian origin in the mid-Miocene was followed by independent colonization events towards New Guinea and New Caledonia in the late Miocene. One colonization of New Guinea led to a large radiation of >150 species and 3 independent colonizations of New Caledonia gave rise to about 40 species. The comparably late colonizations of Vanuatu, Hawaii and China left only one or two species in each region. The contrasting diversification trajectories of these insects on Melanesian islands are likely accounted for by island size, age and availability of ecological opportunities during the colonization stage.

Non-Arrhenius temperature dependence of the island density of one-dimensional Al chains on Si(100): A kinetic Monte Carlo study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Albia, Jason R.; Albao, Marvin A., E-mail: maalbao@uplb.edu.ph

Classical nucleation theory predicts that the evolution of mean island density with temperature during growth in one-dimensional systems obeys the Arrhenius relation. In this study, kinetic Monte Carlo simulations of a suitable atomistic lattice-gas model were performed to investigate the experimentally observed non-Arrhenius scaling behavior of island density in the case of one-dimensional Al islands grown on Si(100). Previously, it was proposed that adatom desorption resulted in a transition temperature signaling the departure from classical predictions. Here, the authors demonstrate that desorption above the transition temperature is not possible. Instead, the authors posit that the existence of a transition temperaturemore » is due to a combination of factors such as reversibility of island growth, presence of C-defects, adatom diffusion rates, as well as detachment rates at island ends. In addition, the authors show that the anomalous non-Arrhenius behavior vanishes when adatom binds irreversibly with C-defects as observed in In on Si(100) studies.« less

Analysis of fractures intersecting Kahi Puka Well 1 and its relation to the growth of the island of Hawaii

USGS Publications Warehouse

Morin, R.H.; Paillet, Frederick L.

1996-01-01

As part of the Hawaii Scientific Drilling Project, Kahi Puka Well 1 penetrated about 275 m of Mauna Loa basalts overlying a sequence of Mauna Kea flow units as it was drilled and cored to a total depth of 1053 m below land surface. A borehole televiewer (BHTV) was run in most of the well in successive stages prior to casing in order to obtain magnetically oriented acoustic images of the borehole wall. A total of 283 individual fractures were identified from this log and characterized in terms of strike and dip. These data are divided into three vertical sections based upon age and volcanic source, and lower hemisphere stereographic plots identify two predominant, subparallel fracture subsets common to each section. Assuming that most of the steeply dipping fractures observed in the BHTV log are tensile features generated within basalt flows during deposition and cooling, this fracture information can be combined with models of the evolution of the island of Hawaii to investigate the depositional history of these Mauna Loa and Mauna Kea basalts over the past 400 kyr. The directions of high-angle fractures appear to be generally parallel to topography or to the coastline at the time of deposition, as is supported by surface mapping of modern flows. Consequently, an overall counterclockwise rotation of about 75?? in the strike of these fractures from the bottom to the top of the well represents a systematic change in depositional slope direction over time. We attribute the observed rotation in the orientations of the two predominant fracture subsets over the past 400 kyr to changes in the configurations of volcanic sources during shield building and to the structural interference of adjacent volcanoes that produces shifts in topographic patterns.

Analysis of fractures intersecting Kahi Puka Well 1 and its relation to the growth of the island of Hawaii

NASA Astrophysics Data System (ADS)

Morin, Roger H.; Paillet, Frederick L.

1996-05-01

As part of the Hawaii Scientific Drilling Project, Kahi Puka Well 1 penetrated about 275 m of Mauna Loa basalts overlying a sequence of Mauna Kea flow units as it was drilled and cored to a total depth of 1053 m below land surface. A borehole televiewer (BHTV) was run in most of the well in successive stages prior to casing in order to obtain magnetically oriented acoustic images of the borehole wall. A total of 283 individual fractures were identified from this log and characterized in terms of strike and dip. These data are divided into three vertical sections based upon age and volcanic source, and lower hemisphere stereographic plots identify two predominant, subparallel fracture subsets common to each section. Assuming that most of the steeply dipping fractures observed in the BHTV log are tensile features generated within basalt flows during deposition and cooling, this fracture information can be combined with models of the evolution of the island of Hawaii to investigate the depositional history of these Mauna Loa and Mauna Kea basalts over the past 400 kyr. The directions of high-angle fractures appear to be generally parallel to topography or to the coastline at the time of deposition, as is supported by surface mapping of modern flows. Consequently, an overall counterclockwise rotation of about 75° in the strike of these fractures from the bottom to the top of the well represents a systematic change in depositional slope direction over time. We attribute the observed rotation in the orientations of the two predominant fracture subsets over the past 400 kyr to changes in the configurations of volcanic sources during shield building and to the structural interference of adjacent volcanoes that produces shifts in topographic patterns.

Population Structure, Genetic Diversity, and Evolutionary History of Kleinia neriifolia (Asteraceae) on the Canary Islands.

PubMed

Sun, Ye; Vargas-Mendoza, Carlos F

2017-01-01

Kleinia neriifolia Haw. is an endemic species on the Canarian archipelago, this species is widespread in the coastal thicket of all the Canarian islands. In the present study, genetic diversity and population structure of K. neriifolia were investigated using chloroplast gene sequences and nuclear SSR (simple sequence repeat). The differentiation among island populations, the historical demography, and the underlying evolutionary scenarios of this species are further tested based on the genetic data. Chloroplast diversity reveals a strong genetic divergence between eastern islands (Gran Canaria, Fuerteventura, and Lanzarote) and western islands (EI Hierro, La Palma, La Gomera, Tenerife), this west-east genetic divergence may reflect a very beginning of speciation. The evolutionary scenario with highest posterior probabilities suggests Gran Canaria as oldest population with a westward colonization path to Tenerife, La Gomera, La Palma, and EI Hierro, and eastward dispersal path to Lanzarote through Fuerteventura. In the western islands, there is a slight decrease in the effective population size toward areas of recent colonization. However, in the eastern islands, the effective population size increase in Lanzarote relative to Gran Canaria and Fuerteventura. These results further our understanding of the evolution of widespread endemic plants within Canarian archipelago.

Population Structure, Genetic Diversity, and Evolutionary History of Kleinia neriifolia (Asteraceae) on the Canary Islands

PubMed Central

Sun, Ye; Vargas-Mendoza, Carlos F.

2017-01-01

Kleinia neriifolia Haw. is an endemic species on the Canarian archipelago, this species is widespread in the coastal thicket of all the Canarian islands. In the present study, genetic diversity and population structure of K. neriifolia were investigated using chloroplast gene sequences and nuclear SSR (simple sequence repeat). The differentiation among island populations, the historical demography, and the underlying evolutionary scenarios of this species are further tested based on the genetic data. Chloroplast diversity reveals a strong genetic divergence between eastern islands (Gran Canaria, Fuerteventura, and Lanzarote) and western islands (EI Hierro, La Palma, La Gomera, Tenerife), this west–east genetic divergence may reflect a very beginning of speciation. The evolutionary scenario with highest posterior probabilities suggests Gran Canaria as oldest population with a westward colonization path to Tenerife, La Gomera, La Palma, and EI Hierro, and eastward dispersal path to Lanzarote through Fuerteventura. In the western islands, there is a slight decrease in the effective population size toward areas of recent colonization. However, in the eastern islands, the effective population size increase in Lanzarote relative to Gran Canaria and Fuerteventura. These results further our understanding of the evolution of widespread endemic plants within Canarian archipelago. PMID:28713419

Crystal MD: The massively parallel molecular dynamics software for metal with BCC structure

NASA Astrophysics Data System (ADS)

Hu, Changjun; Bai, He; He, Xinfu; Zhang, Boyao; Nie, Ningming; Wang, Xianmeng; Ren, Yingwen

2017-02-01

Material irradiation effect is one of the most important keys to use nuclear power. However, the lack of high-throughput irradiation facility and knowledge of evolution process, lead to little understanding of the addressed issues. With the help of high-performance computing, we could make a further understanding of micro-level-material. In this paper, a new data structure is proposed for the massively parallel simulation of the evolution of metal materials under irradiation environment. Based on the proposed data structure, we developed the new molecular dynamics software named Crystal MD. The simulation with Crystal MD achieved over 90% parallel efficiency in test cases, and it takes more than 25% less memory on multi-core clusters than LAMMPS and IMD, which are two popular molecular dynamics simulation software. Using Crystal MD, a two trillion particles simulation has been performed on Tianhe-2 cluster.

Teaching and Learning: Highlighting the Parallels between Education and Participatory Evaluation.

ERIC Educational Resources Information Center

Vanden Berk, Eric J.; Cassata, Jennifer Coyne; Moye, Melinda J.; Yarbrough, Donald B.; Siddens, Stephanie K.

As an evaluation team trained in educational psychology and committed to participatory evaluation and its evolution, the researchers have found the parallel between evaluator-stakeholder roles in the participatory evaluation process and educator-student roles in educational psychology theory to be important. One advantage then is that the theories…

New Parallel Algorithms for Landscape Evolution Model

NASA Astrophysics Data System (ADS)

Jin, Y.; Zhang, H.; Shi, Y.

2017-12-01

Most landscape evolution models (LEM) developed in the last two decades solve the diffusion equation to simulate the transportation of surface sediments. This numerical approach is difficult to parallelize due to the computation of drainage area for each node, which needs huge amount of communication if run in parallel. In order to overcome this difficulty, we developed two parallel algorithms for LEM with a stream net. One algorithm handles the partition of grid with traditional methods and applies an efficient global reduction algorithm to do the computation of drainage areas and transport rates for the stream net; the other algorithm is based on a new partition algorithm, which partitions the nodes in catchments between processes first, and then partitions the cells according to the partition of nodes. Both methods focus on decreasing communication between processes and take the advantage of massive computing techniques, and numerical experiments show that they are both adequate to handle large scale problems with millions of cells. We implemented the two algorithms in our program based on the widely used finite element library deal.II, so that it can be easily coupled with ASPECT.

Intermittent Flare Energy Release: A Signature of Contracting Magnetic Islands from Reconnection?

NASA Astrophysics Data System (ADS)

Guidoni, S. E.; Karpen, J. T.; DeVore, C.

2013-12-01

Many flares show short-lived enhancements of emission that protrude above their smooth underlying emission. These spikes have been observed over a vast energy spectrum, from radio to hard x-rays. In hard X-rays, for example, their duration ranges from 0.2 to 2 s, with the majority occurring during the flare impulsive phase (Cheng 2012). In most cases, this intermittent energy release is situated at the footpoints of flare arcades where ionized particles, previously accelerated to high energies at coronal heights, are decelerated by the dense solar surface. It is not yet understood what mechanisms accelerate ionized particles to the energies required to produce the observed emission spikes. Drake et al. (2006) proposed a kinetic mechanism for accelerating electrons from contracting magnetic islands that form as reconnection proceeds, analogous to the energy gain of a ball bouncing between converging walls. They estimated that multi-island regions of macroscopic dimensions might account for the required acceleration rates in flares, but at this time it is impractical to simulate large-scale systems in kinetic models. On the other hand, our recent high-resolution MHD simulations of a breakout eruptive flare (Karpen et al. 2012) allow us to resolve in detail the generation and evolution of macroscopic magnetic islands in a flare current sheet. Incorporating a rigorous kinetic model into our global simulations is not feasible at present. However, we intend to breach the gap between kinetic and fluid models by characterizing the contractions of islands as they move away from the main reconnection site, to determine their plausibility as candidates for the observed bursts of radiation. With our null-tracking capabilities, we follow the creation and evolution of the X- and O-type (island) nulls that result from spatially and temporally localized reconnection. Different regimes of current-sheet reconnection (slow/fast), island sizes, rates of island coalescence, and rates of reconnection between islands and arcades may help to explain the variety of energy and time scales exhibited by flare emission spikes. This research was supported, in part, by NASA's SR&T program and by an appointment to the NASA Postdoctoral Program at the Goddard Space Flight Center administered by Oak Ridge Associated Universities through a contract with NASA.

Integrated studies of the recent evolution of Deception Island in the geodynamic setting of the Bransfield Basin opening (Antarctica): GEOMAGDEC Project

NASA Astrophysics Data System (ADS)

Maestro, Adolfo; Gil-Imaz, Andrés.; Gil-Peña, Inmaculada; Galindo-Zaldívar, Jesús; Rey, Jorge; Soto, Ruth; López-Martínez, Jerónimo; Llave, Estefanía.; Bohoyo, Fernando; Rull, Fernando; Martínez-Frías, Jesús; Galán, Luis; Casas, David; Lunar, Rosario; Ercilla, Gemma; Somoza, Luis

2010-05-01

Deception Island shows the most recent active volcanism, evidence of several eruptions since the late 18th century, and well-known eruptions in 1967, 1969, and 1970 at the western end of the volcanic ridge of the Bransfield Trough, between the South Shetland Islands and the Antarctic Peninsula. The recent tectonic activity of the Bransfield Trough is not well defined, and it presents a controversial origin. It is currently explained by two different models: (1) Opening of the basin may be related to passive subduction of the former Phoenix Plate and subsequent rollback of the South Shetland Trench; or (2) an oblique extension along the Antarctic Peninsula continental margin generated by the sinistral movement between the Antarctic and Scotia plates. This extension develops the Bransfield Trough and spread away the South Shetland tectonic block. The GEOMAGDEC project involves a multidisciplinary and integrated research of the Deception Island based on geophysical and geological methods. The purpose of this project, funded by the Spanish research agency, is the understanding of the main processes that govern the evolution of the Deception Island into the development of Bransfield Basin during recent times. Main aims are: (1) Study of the anisotropy of the magnetic susceptibility of volcanic deposits of emerged area of Deception Island to determine the relationship between magmatism (intrusive and extrusive) with the recent tectonic activity. This task allows the reconstruction of igneous flow directions of the different volcanic units established in the island, dikes emplacement modelling in active tectonic regime, and the integration of the results obtained in a kinematic and dynamic emplacement model of the different volcanic units of the Deception Island into recent geodynamic setting of Bransfield Basin opening. (2) Lito- and crono-stratigraphy analysis of the quaternary sedimentary units that filled Port Foster (inner bay of Deception Island) on the basis of the ultra-high seismic profiles and gravity cores data acquired during oceanographic campaigns carried out using the RV. BIO/HESPERIDES. (3) Recovery of the Hydrothermal Precipitation Cells (HPCs) emplaced in Port Foster during 2001 austral summer and the mineralogical and geochemical analysis of the precipitate deposits located in the inner walls of the HPCs. The analysis of these samples will provide important information about the recent volcanic activity.

Parallel genetic origins of pelvic reduction in vertebrates

PubMed Central

Shapiro, Michael D.; Bell, Michael A.; Kingsley, David M.

2006-01-01

Despite longstanding interest in parallel evolution, little is known about the genes that control similar traits in different lineages of vertebrates. Pelvic reduction in stickleback fish (family Gasterosteidae) provides a striking example of parallel evolution in a genetically tractable system. Previous studies suggest that cis-acting regulatory changes at the Pitx1 locus control pelvic reduction in a population of threespine sticklebacks (Gasterosteus aculeatus). In this study, progeny from intergeneric crosses between pelvic-reduced threespine and ninespine (Pungitius pungitius) sticklebacks also showed severe pelvic reduction, implicating a similar genetic origin for this trait in both genera. Comparative sequencing studies in complete and pelvic-reduced Pungitius revealed no differences in the Pitx1 coding sequences, but Pitx1 expression was absent from the prospective pelvic region of larvae from pelvic-reduced parents. A much more phylogenetically distant example of pelvic reduction, loss of hindlimbs in manatees, shows a similar left–right size bias that is a morphological signature of Pitx1-mediated pelvic reduction in both sticklebacks and mice. These multiple lines of evidence suggest that changes in Pitx1 may represent a key mechanism of morphological evolution in multiple populations, species, and genera of sticklebacks, as well as in distantly related vertebrate lineages. PMID:16945911

Protons and alpha particles in the expanding solar wind: Hybrid simulations

NASA Astrophysics Data System (ADS)

Hellinger, Petr; Trávníček, Pavel M.

2013-09-01

We present results of a two‒dimensional hybrid expanding box simulation of a plasma system with three ion populations, beam and core protons, and alpha particles (and fluid electrons), drifting with respect to each other. The expansion with a strictly radial magnetic field leads to a decrease of the ion perpendicular to parallel temperature ratios as well as to an increase of the ratio between the ion relative velocities and the local Alfvén velocity creating a free energy for many different instabilities. The system is most of the time marginally stable with respect to kinetic instabilities mainly due to the ion relative velocities; these instabilities determine the system evolution counteracting some effects of the expansion. Nonlinear evolution of these instabilities leads to large modifications of the ion velocity distribution functions. The beam protons and alpha particles are decelerated with respect to the core protons and all the populations are cooled in the parallel direction and heated in the perpendicular one. On the macroscopic level, the kinetic instabilities cause large departures of the system evolution from the double adiabatic prediction and lead to perpendicular heating and parallel cooling rates which are comparable to the heating rates estimated from the Helios observations.

Mars, Always Cold, Sometimes Wet: New Constraints on Mars Denudation Rates and Climate Evolution from Analog Studies at Haughton Crater, Devon Island, High Arctic

NASA Technical Reports Server (NTRS)

Lee, Pascal; Boucher, M.; Desportes, C.; Glass, B. J.; Lim, D.; McKay, C. P.; Osinski, G. R.; Parnell, J.; Schutt, J. W.

2005-01-01

Analysis of crater modification on Mars and at Haughton Crater, Devon Island, High Arctic, which was recently shown to be significantly older than previously believed (Eocene age instead of Miocene) [1], suggest that Mars may have never been climatically wet and warm for geological lengths of time during and since the Late Noachian. Impact structures offer particularly valuable records of the evolution of a planet s climate and landscape through time. The state of exposure and preservation of impact structures and their intracrater fill provide clues to the nature, timing, and intensity of the processes that have modified the craters since their formation. Modifying processes include weathering, erosion, mantling, and infilling. In this study, we compare the modification of Haughton through time with that of impact craters in the same size class on Mars. We derive upper limits for time-integrated denudation rates on Mars during and since the Late Noachian. These rates are significantly lower than previously published and provide important constraints for Mars climate evolution.

A POPULATION MEMETICS APPROACH TO CULTURAL EVOLUTION IN CHAFFINCH SONG: DIFFERENTIATION AMONG POPULATIONS.

PubMed

Lynch, Alejandro; Baker, Allan J

1994-04-01

We investigated cultural evolution in populations of common chaffinches (Fringilla coelebs) in the Atlantic islands (Azores, Madeira, and Canaries) and neighboring continental regions (Morocco and Iberia) by employing a population-memetic approach. To quantify differentiation, we used the concept of a song meme, defined as a single syllable or a series of linked syllables capable of being transmitted. The levels of cultural differentiation are higher among the Canaries populations than among the Azorean ones, even though the islands are on average closer to each other geographically. This is likely the result of reduced levels of migration, lower population sizes, and bottlenecks (possibly during the colonization of these populations) in the Canaries; all these factors produce a smaller effective population size and therefore accentuate the effects of differentiation by random drift. Significant levels of among-population differentiation in the Azores, in spite of substantial levels of migration, attest to the differentiating effects of high mutation rates of memes, which allow the accumulation of new mutants in different populations before migration can disperse them throughout the entire region. © 1994 The Society for the Study of Evolution.

Water prospection in volcanic islands by Time Domain Electromagnetic (TDEM) surveying: The case study of the islands of Fogo and Santo Antão in Cape Verde

NASA Astrophysics Data System (ADS)

Martínez-Moreno, F. J.; Monteiro-Santos, F. A.; Madeira, J.; Bernardo, I.; Soares, A.; Esteves, M.; Adão, F.

2016-11-01

Water demand in islands, focused in agriculture, domestic use and tourism, is usually supplied by groundwater. Thus the information about groundwater distribution is an important issue in islands water resources management. Time Domain Electromagnetic (TDEM) provides underground resistivity distribution at greater depths and is of easier application than other methods. In this study TDEM technique was used for groundwater prospection in two volcanic islands with water supply problems, the islands of Fogo and Santo Antão in the Republic of Cape Verde. The 10 islands of Cape Verde Archipelago, located off the coast of Senegal (W Africa), present a semi-arid climate and thus suffer from irregular and scarce precipitation. In the Island of Fogo 26 TDEM soundings, presenting an area distribution, were performed on the SW flank of the volcanic edifice. These allowed obtaining a 3D model composed of 5 layers parallel to the topographic surface separated by 50 m depth down to - 250 m. The results indicate the presence of the water-table at a depth of 150 m in the lower ranges of the W flank of the island, and at > 200 m depth in the area above 250 m above sea level (a.s.l.). In the Island of Santo Antão 32 TDEM soundings, distributed along 5 linear profiles, were obtained on the north-eastern half of the island. The profiles are located in two regions exposed to different humidity conditions to the N and S of the main water divide. The northern flank receives the dominant trade winds first and most of the precipitation and, therefore, the water-table is shallower ( 50 m depth) than in the S ( 100 m depth). Our study demonstrates the applicability and usefulness of the TDEM method for groundwater prospection in high resistivity contexts such as in volcanic islands.

Vulnerability of National Park Service beaches to inundation during a direct hurricane landfall: Fire Island National Seashore

USGS Publications Warehouse

Stockdon, Hilary F.; Thompson, David M.

2007-01-01

Waves and storm surge associated with strong tropical storms are part of the natural process of barrier-island evolution and can cause extensive morphologic changes in coastal parks, leading to reduced visitor accessibility and enjoyment. Even at Fire Island National Seashore, a barrier-island coastal park in New York where extratropical storms (northeasters) dominate storm activity, the beaches are vulnerable to the powerful, sand-moving forces of hurricanes. The vulnerability of park beaches to inundation, and associated extreme coastal change, during a direct hurricane landfall can be assessed by comparing the elevations of storm-induced mean-water levels (storm surge) to the elevations of the crest of the sand dune that defines the beach system. Maps detailing the inundation potential for Category 1-4 hurricanes can be used by park managers to determine the relative vulnerability of various barrier-island parks and to assess which areas of a particular park are more susceptible to inundation and extreme coastal changes.

Candidate genes and adaptive radiation: insights from transcriptional adaptation to the limnetic niche among coregonine fishes (Coregonus spp., Salmonidae).

PubMed

Jeukens, Julie; Bittner, David; Knudsen, Rune; Bernatchez, Louis

2009-01-01

In the past 40 years, there has been increasing acceptance that variation in levels of gene expression represents a major source of evolutionary novelty. Gene expression divergence is therefore likely to be involved in the emergence of incipient species, namely, in a context of adaptive radiation. In the lake whitefish species complex (Coregonus clupeaformis), previous microarray experiments have led to the identification of candidate genes potentially implicated in the parallel evolution of the limnetic dwarf lake whitefish, which is highly distinct from the benthic normal lake whitefish in life history, morphology, metabolism, and behavior, and yet diverged from it only approximately 15,000 years before present. The aim of the present study was to address transcriptional divergence for six candidate genes among lake whitefish and European whitefish (Coregonus lavaretus) species pairs, as well as lake cisco (Coregonus artedi) and vendace (Coregonus albula). The main goal was to test the hypothesis that parallel phenotypic adaptation toward the use of the limnetic niche in coregonine fishes is accompanied by parallelism in candidate gene transcription as measured by quantitative real-time polymerase chain reaction. Results obtained for three candidate genes, whereby parallelism in expression was observed across all whitefish species pairs, provide strong support for the hypothesis that divergent natural selection plays an important role in the adaptive radiation of whitefish species. However, this parallelism in expression did not extend to cisco and vendace, thereby infirming transcriptional convergence between limnetic whitefish species and their limnetic congeners for these genes. As recently proposed (Lynch 2007a. The evolution of genetic networks by non-adaptive processes. Nat Rev Genet. 8:803-813), these results may suggest that convergent phenotypic evolution can result from nonadaptive shaping of genome architecture in independently evolved coregonine lineages.

Crystal alignments in the Fast ice of arctic Alaska

NASA Astrophysics Data System (ADS)

Weeks, W. F.; Gow, A. J.

1980-02-01

Field observations at 60 sites located in the fast or near-fast ice along a 1200-km stretch of the north coast of Alaska between the Bering Strait and Barter Island have shown that the great majority of the ice samples (95%) exhibit striking c axis alignments within the horizontal plane. In all cases the degree of preferred orientation increased with depth in the ice. Representative standard deviations around a mean direction in the horizontal plane are commonly less than ±10° for samples collected near the bottom of the ice. At a given site the mean c axis direction ?0 may vary as much as 20° with vertical location in the ice sheet. The c axis allignments in the nearshore region generally parallel the coast, with strong alignments occurring in the lagoon systems between the barrier islands and the coast and seaward of the barrier islands. In passes between islands and in entrances such as the opening to Kotzebue Sound the alignment is parallel to the channel. Only limited observations are available farther seaward over the inner (10- to 50-m isobaths) and outer (50-m isobath to shelf break) shelf regions. These indicate NE-SW and E-W alignments, respectively, in the Beaufort Sea north of Prudhoe Bay. The general patterns of the alignments support the correlation between the preferred c axis direction and the current direction at the ice/water interface suggested by Weeks and Gow (1978). A comparison between c axis alignments and instantaneous current measurements made at 42 locations shows that the most frequent current direction coincides with ?0. At the one site where we were able to determine the current direction (52°T) over a longer period (7 hours), the agreement with ?0. (48°T) was excellent. Similarly, if only ?0. values determined in the nearshore region are considered, the most frequent deviation is 10° or less between ?0. and the trend of the adjacent shoreline, which is presumably parallel to the prevailing longshore currents. The c axis alignments are believed to be the result of geometric selection, with the most favored orientation being that in which the current flows normal to the (0001) plates of ice that comprise the dendritic sea ice/seawater interface. The instantaneous current observations suggest SW nearshore currents along the Chukchi coast between SW of Point Lay and SW of the Rogers-Post Monument. In the vicinity of Barrow all currents measured along the Chukchi coast were toward the NE. Current directions along the Beaufort coast in the nearshore region were generally parallel to the coast, with 45% of the observations indicating currents toward the E and 55% currents toward the W.

Fracture surfaces of granular pastes.

PubMed

Mohamed Abdelhaye, Y O; Chaouche, M; Van Damme, H

2013-11-01

Granular pastes are dense dispersions of non-colloidal grains in a simple or a complex fluid. Typical examples are the coating, gluing or sealing mortars used in building applications. We study the cohesive rupture of thick mortar layers in a simple pulling test where the paste is initially confined between two flat surfaces. After hardening, the morphology of the fracture surfaces was investigated, using either the box counting method to analyze fracture profiles perpendicular to the mean fracture plane, or the slit-island method to analyze the islands obtained by cutting the fracture surfaces at different heights, parallel to the mean fracture plane. The fracture surfaces were shown to exhibit scaling properties over several decades. However, contrary to what has been observed in the brittle or ductile fracture of solid materials, the islands were shown to be mass fractals. This was related to the extensive plastic flow involved in the fracture process.

Mechanics of evolving thin film structures

NASA Astrophysics Data System (ADS)

Liang, Jim

In the Stranski-Krastanov system, the lattice mismatch between the film and the substrate causes the film to break into islands. During annealing, both the surface energy and the elastic energy drive the islands to coarsen. Motivated by several related studies, we suggest that stable islands should form when a stiff ceiling is placed at a small gap above the film. We show that the role of elasticity is reversed: with the ceiling, the total elastic energy stored in the system increases as the islands coarsen laterally. Consequently, the islands select an equilibrium size to minimize the combined elastic energy and surface energy. In lithographically-induced self-assembly, when a two-phase fluid confined between parallel substrates is subjected to an electric field, one phase can self-assemble into a triangular lattice of islands in another phase. We describe a theory of the stability of the island lattice. The islands select the equilibrium diameter to minimize the combined interface energy and electrostatic energy. Furthermore, we study compressed SiGe thin film islands fabricated on a glass layer, which itself lies on a silicon wafer. Upon annealing, the glass flows, and the islands relax. A small island relaxes by in-plane expansion. A large island, however, wrinkles at the center before the in-plane relaxation arrives. The wrinkles may cause significant tensile stress in the island, leading to fracture. We model the island by the von Karman plate theory and the glass layer by the Reynolds lubrication theory. Numerical simulations evolve the in-plane expansion and the wrinkles simultaneously. We determine the critical island size, below which in-plane expansion prevails over wrinkling. Finally, in devices that integrate dissimilar materials in small dimensions, crack extension in one material often accompanies inelastic deformation in another. We analyze a channel crack advancing in an elastic film under tension, while an underlayer creeps. We use a two-dimensional shear lag model to approximate the three-dimensional fracture process. Based on the computational results, we propose new experiments to measure fracture toughness and creep laws in small structures. Similarly, we study delayed crack initiation, steady crack growth, and transient crack growth when the underlayer is viscoelastic.

Evolution of Overlapping Spreading Centers: A SeaMARC II Investigation

DTIC Science & Technology

1990-06-07

Rhode Island , Narragansett, RI 02882 During a major SeaMARC II expedition in May-June 1987 we happed all the overlapping spreading centers (OSCs) north...Macdonald, 1988, The structural anatomy of the Clipperton and Orozco fracture zones: Sea Beam and SeaMARC II data, EOS Trans., Amer. Geophys. Union...raphy at the University of Rhode Island . most of them are deeper and less ing. Other workers further refined and in 1i.,72 he earned his Ph.D. in marine

Fortresses and Icebergs: The Evolution of the Transatlantic Defense Market and the Implications for U.S. National Security Policy. Volume 2: Country Studies

DTIC Science & Technology

2009-01-01

CHILE ECUADOR PARAGUAY URUGUAY FALKLAND ISLANDS SOUTH GEORGIA ISLAND KENYA ETHIOPIA ERITREA SUDAN EGYPT NIGER MAURITANIA MALI NIGERIA SOMALIA NAMIBIA...painful economic reforms also began to bear fruit. The currency stabilized and budget deficits were brought under control as the country moved toward...the criteria of the Maastricht Treaty to adopt the single European currency in place of the zloty, but entry into the Euro- zone is scheduled for 2012

STS-65 Earth observation of Hurricane Emilia taken aboard Columbia, OV-102

NASA Image and Video Library

1994-07-23

STS-65 Earth observation of Hurricane Emilia in Pacific Ocean was taken aboard Columbia, Orbiter Vehicle (OV) 102. This vertical view, photographed with a handheld 70mm camera, reveals the well-defined eye of the hurricane as it moves westerly several hundred miles southeast of the big island of Hawaii. Early in the flight the crew was able to observe the evolution of the storm and there was some concern that it might eventually head toward the Hawaiian Islands. Fortunately it did not.

Phylogenetic analysis revealed the central roles of two African countries in the evolution and worldwide spread of Zika virus.

PubMed

Shen, Shu; Shi, Junming; Wang, Jun; Tang, Shuang; Wang, Hualin; Hu, Zhihong; Deng, Fei

2016-04-01

Recent outbreaks of Zika virus (ZIKV) infections in Oceania's islands and the Americas were characterized by high numbers of cases and the spread of the virus to new areas. To better understand the origin of ZIKV, its epidemic history was reviewed. Although the available records and information are limited, two major genetic lineages of ZIKV were identified in previous studies. However, in this study, three lineages were identified based on a phylogenetic analysis of all virus sequences from GenBank, including those of the envelope protein (E) and non-structural protein 5 (NS5) coding regions. The spatial and temporal distributions of the three identified ZIKV lineages and the recombination events and mechanisms underlying their divergence and evolution were further elaborated. The potential migration pathway of ZIKV was also characterized. Our findings revealed the central roles of two African countries, Senegal and Cote d'Ivoire, in ZIKV evolution and genotypic divergence. Furthermore, our results suggested that the outbreaks in Asia and the Pacific islands originated from Africa. The results provide insights into the geographic origins of ZIKV outbreaks and the spread of the virus, and also contribute to a better understanding of ZIKV evolution, which is important for the prevention and control of ZIKV infections.

Genetics of Genome-Wide Recombination Rate Evolution in Mice from an Isolated Island.

PubMed

Wang, Richard J; Payseur, Bret A

2017-08-01

Recombination rate is a heritable quantitative trait that evolves despite the fundamentally conserved role that recombination plays in meiosis. Differences in recombination rate can alter the landscape of the genome and the genetic diversity of populations. Yet our understanding of the genetic basis of recombination rate evolution in nature remains limited. We used wild house mice ( Mus musculus domesticus ) from Gough Island (GI), which diverged recently from their mainland counterparts, to characterize the genetics of recombination rate evolution. We quantified genome-wide autosomal recombination rates by immunofluorescence cytology in spermatocytes from 240 F 2 males generated from intercrosses between GI-derived mice and the wild-derived inbred strain WSB/EiJ. We identified four quantitative trait loci (QTL) responsible for inter-F 2 variation in this trait, the strongest of which had effects that opposed the direction of the parental trait differences. Candidate genes and mutations for these QTL were identified by overlapping the detected intervals with whole-genome sequencing data and publicly available transcriptomic profiles from spermatocytes. Combined with existing studies, our findings suggest that genome-wide recombination rate divergence is not directional and its evolution within and between subspecies proceeds from distinct genetic loci. Copyright © 2017 by the Genetics Society of America.

RECONNECTION PROPERTIES OF LARGE-SCALE CURRENT SHEETS DURING CORONAL MASS EJECTION ERUPTIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lynch, B. J.; Kazachenko, M. D.; Edmondson, J. K.

2016-07-20

We present a detailed analysis of the properties of magnetic reconnection at large-scale current sheets (CSs) in a high cadence version of the Lynch and Edmondson 2.5D MHD simulation of sympathetic magnetic breakout eruptions from a pseudostreamer source region. We examine the resistive tearing and break-up of the three main CSs into chains of X- and O-type null points and follow the dynamics of magnetic island growth, their merging, transit, and ejection with the reconnection exhaust. For each CS, we quantify the evolution of the length-to-width aspect ratio (up to ∼100:1), Lundquist number (∼10{sup 3}), and reconnection rate (inflow-to-outflow ratiosmore » reaching ∼0.40). We examine the statistical and spectral properties of the fluctuations in the CSs resulting from the plasmoid instability, including the distribution of magnetic island area, mass, and flux content. We show that the temporal evolution of the spectral index of the reconnection-generated magnetic energy density fluctuations appear to reflect global properties of the CS evolution. Our results are in excellent agreement with recent, high-resolution reconnection-in-a-box simulations even though our CSs’ formation, growth, and dynamics are intrinsically coupled to the global evolution of sequential sympathetic coronal mass ejection eruptions.« less

Tree island pattern formation in the Florida Everglades

USGS Publications Warehouse

Carr, Joel; D'Odorico, P.; Engel, Victor C.; Redwine, Jed

2016-01-01

The Florida Everglades freshwater landscape exhibits a distribution of islands covered by woody vegetation and bordered by marshes and wet prairies. Known as “tree islands”, these ecogeomorphic features can be found in few other low gradient, nutrient limited freshwater wetlands. In the last few decades, however, a large percentage of tree islands have either shrank or disappeared in apparent response to altered water depths and other stressors associated with human impacts on the Everglades. Because the processes determining the formation and spatial organization of tree islands remain poorly understood, it is still unclear what controls the sensitivity of these landscapes to altered conditions. We hypothesize that positive feedbacks between woody plants and soil accretion are crucial to emergence and decline of tree islands. Likewise, positive feedbacks between phosphorus (P) accumulation and trees explain the P enrichment commonly observed in tree island soils. Here, we develop a spatially-explicit model of tree island formation and evolution, which accounts for these positive feedbacks (facilitation) as well as for long range competition and fire dynamics. It is found that tree island patterns form within a range of parameter values consistent with field data. Simulated impacts of reduced water levels, increased intensity of drought, and increased frequency of dry season/soil consuming fires on these feedback mechanisms result in the decline and disappearance of tree islands on the landscape.

Evolution of Ge nanoislands on Si(110)-'16 × 2' surface under thermal annealing studied using STM

NASA Astrophysics Data System (ADS)

Gangopadhyay, Subhashis; Yoshimura, Masamichi; Ueda, Kazuyuki

2009-11-01

The initial nucleation of Ge nanoclusters on Si(110) at room temperature (RT), annealing-induced surface roughening and the evolution of three-dimensional Ge nanoislands have been investigated using scanning tunneling microscopy (STM). A few monolayers (ML) of Ge deposited at room temperature lead to the formation of Ge clusters which are homogeneously distributed across the surface. The stripe-like patterns, characteristic of the Si(110)-'16 × 2' surface reconstruction are also retained. Increasing annealing temperatures, however, lead to significant surface diffusion and thus, disruption of the underlying '16 × 2' reconstruction. The annealing-induced removal of the stripe structures (originated from '16 × 2' reconstruction) starts at approximately 300 °C, whereas the terrace structures of Si(110) are thermally stable up to 500 °C. At approximately 650 °C, shallow Ge islands of pyramidal shape with (15,17,1) side facets start to form. Annealing at even higher temperatures enhances Ge island formation. Our findings are explained in terms of partial dewetting of the metastable Ge wetting layer (WL) (formed at room temperature) as well as partial relaxation of lattice strain through three-dimensional (3D) island growth.

Resolving carbonate platform geometries on the Island of Bonaire, Caribbean Netherlands through semi-automatic GPR facies classification

NASA Astrophysics Data System (ADS)

Bowling, R. D.; Laya, J. C.; Everett, M. E.

2018-07-01

The study of exposed carbonate platforms provides observational constraints on regional tectonics and sea-level history. In this work Miocene-aged carbonate platform units of the Seroe Domi Formation are investigated on the island of Bonaire, located in the Southern Caribbean. Ground penetrating radar (GPR) was used to probe near-surface structural geometries associated with these lithologies. The single cross-island transect described herein allowed for continuous mapping of geologic structures on kilometre length scales. Numerical analysis was applied to the data in the form of k-means clustering of structure-parallel vectors derived from image structure tensors. This methodology enables radar facies along the survey transect to be semi-automatically mapped. The results provide subsurface evidence to support previous surficial and outcrop observations, and reveal complex stratigraphy within the platform. From the GPR data analysis, progradational clinoform geometries were observed on the northeast side of the island which support the tectonics and depositional trends of the region. Furthermore, several leeward-side radar facies are identified which correlate to environments of deposition conducive to dolomitization via reflux mechanisms.

Carbide Derived Carbon Super Capacitor Application

NASA Astrophysics Data System (ADS)

Appelgate, James; Bauer, Dave; Quirin, James; Lofland, S. E.; Hettinger, J. D.; Heon, M.; Gogotsi, Y.

2010-02-01

Supercapacitors can be applied into many different fields from nano-robots to high density energy storage. Growing TiC films from a know recipe and removing the transition metal element, Titanium, by chlorination leaves a carbon film that can then be applied as an electrode in a super capacitor. The problem is when the Titanium is removed from the film the stress induced by this process causes the films to fracture into isolated islands. The islands allow electrons to travel across them every easily, but there is no transfer of electrons from island to island. We present results of an investigation of a technique control the location of the fractures and use them to our benefit. Ideally, we want to create them to fracture in parallel lines. To force these fractures into straight lines we will purchase substrates with thermal SiO2 created on the surface of Si. Using an etching process we will removed a channel of SiO2 the same as the thickness of the TiC film we plan on growing. These channels will allow the fractures to form in a correlated way creating a straight line. )

Extraordinary epitaxial alignment of graphene islands on Au(111)

NASA Astrophysics Data System (ADS)

Wofford, Joseph M.; Starodub, Elena; Walter, Andrew L.; Nie, Shu; Bostwick, Aaron; Bartelt, Norman C.; Thürmer, Konrad; Rotenberg, Eli; McCarty, Kevin F.; Dubon, Oscar D.

2012-05-01

Pristine, single-crystalline graphene displays a unique collection of remarkable electronic properties that arise from its two-dimensional, honeycomb structure. Using in situ low-energy electron microscopy, we show that when deposited on the (111) surface of Au carbon forms such a structure. The resulting monolayer, epitaxial film is formed by the coalescence of dendritic graphene islands that nucleate at a high density. Over 95% of these islands can be identically aligned with respect to each other and to the Au substrate. Remarkably, the dominant island orientation is not the better lattice-matched 30° rotated orientation but instead one in which the graphene [01] and Au [011] in-plane directions are parallel. The epitaxial graphene film is only weakly coupled to the Au surface, which maintains its reconstruction under the slightly p-type doped graphene. The linear electronic dispersion characteristic of free-standing graphene is retained regardless of orientation. That a weakly interacting, non-lattice matched substrate is able to lock graphene into a particular orientation is surprising. This ability, however, makes Au(111) a promising substrate for the growth of single crystalline graphene films.

Resolving Carbonate Platform Geometries on the Island of Bonaire, Caribbean Netherlands through Semi-Automatic GPR Facies Classification

NASA Astrophysics Data System (ADS)

Bowling, R. D.; Laya, J. C.; Everett, M. E.

2018-05-01

The study of exposed carbonate platforms provides observational constraints on regional tectonics and sea-level history. In this work Miocene-aged carbonate platform units of the Seroe Domi Formation are investigated, on the island of Bonaire, located in the Southern Caribbean. Ground penetrating radar (GPR) was used to probe near-surface structural geometries associated with these lithologies. The single cross-island transect described herein allowed for continuous mapping of geologic structures on kilometer length scales. Numerical analysis was applied to the data in the form of k-means clustering of structure-parallel vectors derived from image structure tensors. This methodology enables radar facies along the survey transect to be semi-automatically mapped. The results provide subsurface evidence to support previous surficial and outcrop observations, and reveal complex stratigraphy within the platform. From the GPR data analysis, progradational clinoform geometries were observed on the northeast side of the island which supports the tectonics and depositional trends of the region. Furthermore, several leeward-side radar facies are identified which correlate to environments of deposition conducive to dolomitization via reflux mechanisms.

Parallel evolution of mound-building and grass-feeding in Australian nasute termites.

PubMed

Arab, Daej A; Namyatova, Anna; Evans, Theodore A; Cameron, Stephen L; Yeates, David K; Ho, Simon Y W; Lo, Nathan

2017-02-01

Termite mounds built by representatives of the family Termitidae are among the most spectacular constructions in the animal kingdom, reaching 6-8 m in height and housing millions of individuals. Although functional aspects of these structures are well studied, their evolutionary origins remain poorly understood. Australian representatives of the termitid subfamily Nasutitermitinae display a wide variety of nesting habits, making them an ideal group for investigating the evolution of mound building. Because they feed on a variety of substrates, they also provide an opportunity to illuminate the evolution of termite diets. Here, we investigate the evolution of termitid mound building and diet, through a comprehensive molecular phylogenetic analysis of Australian Nasutitermitinae. Molecular dating analysis indicates that the subfamily has colonized Australia on three occasions over the past approximately 20 Myr. Ancestral-state reconstruction showed that mound building arose on multiple occasions and from diverse ancestral nesting habits, including arboreal and wood or soil nesting. Grass feeding appears to have evolved from wood feeding via ancestors that fed on both wood and leaf litter. Our results underscore the adaptability of termites to ancient environmental change, and provide novel examples of parallel evolution of extended phenotypes. © 2017 The Author(s).

Heterospecific eavesdropping in ant-following birds of the Neotropics is a learned behaviour.

PubMed

Pollock, Henry S; Martínez, Ari E; Kelley, J Patrick; Touchton, Janeene M; Tarwater, Corey E

2017-10-25

Animals eavesdrop on other species to obtain information about their environments. Heterospecific eavesdropping can yield tangible fitness benefits by providing valuable information about food resources and predator presence. The ability to eavesdrop may therefore be under strong selection, although extensive research on alarm-calling in avian mixed-species flocks has found only limited evidence that close association with another species could select for innate signal recognition. Nevertheless, very little is known about the evolution of eavesdropping behaviour and the mechanism of heterospecific signal recognition, particularly in other ecological contexts, such as foraging. To understand whether heterospecific eavesdropping was an innate or learned behaviour in a foraging context, we studied heterospecific signal recognition in ant-following birds of the Neotropics, which eavesdrop on vocalizations of obligate ant-following species to locate and recruit to swarms of the army ant Eciton burchellii , a profitable food resource. We used a playback experiment to compare recruitment of ant-following birds to vocalizations of two obligate species at a mainland site (where both species are present) and a nearby island site (where one species remains whereas the other went extinct approx. 40 years ago). We found that ant-following birds recruited strongly to playbacks of the obligate species present at both island and mainland sites, but the island birds did not recruit to playbacks of the absent obligate species. Our results strongly suggest that (i) ant-following birds learn to recognize heterospecific vocalizations from ecological experience and (ii) island birds no longer recognize the locally extinct obligate species after eight generations of absence from the island. Although learning appears to be the mechanism of heterospecific signal recognition in ant-following birds, more experimental tests are needed to fully understand the evolution of eavesdropping behaviour. © 2017 The Author(s).

Hurricane impact and recovery shoreline change analysis of the Chandeleur Islands, Louisiana, USA: 1855 to 2005

NASA Astrophysics Data System (ADS)

Fearnley, Sarah Mary; Miner, Michael D.; Kulp, Mark; Bohling, Carl; Penland, Shea

2009-12-01

Results from historical (1855-2005) shoreline change analysis conducted along the Chandeleur Islands, Louisiana demonstrate that tropical cyclone frequency dominates the long-term evolution of this barrier island chain. Island area decreased at a rate of -0.16 km2/year for the relatively quiescent time period up until 1996, when an increase in tropical cyclone frequency accelerated this island area reduction to a rate of -1.01 km2/year. More frequent hurricanes also affected shoreline retreat rates, which increased from -11.4 m/year between 1922 and 1996 to -41.9 m/year between 1982 and 2005. The erosional impact caused by the passage of Hurricane Katrina in 2005 was unprecedented. Between 2004 and 2005, the shoreline of the northern islands retreated -201.5 m/year, compared with an average retreat rate of -38.4 m/year between 1922 and 2004. A linear regression analysis of shoreline change predicts that, as early as 2013, the backbarrier marsh that serves to stabilize the barrier island chain will be completely destroyed if storm frequency observed during the past decade persists. If storm frequency decreases to pre-1996 recurrence intervals, the backbarrier marsh is predicted to remain until 2037. Southern portions of the barrier island chain where backbarrier marsh is now absent behave as ephemeral islands that are destroyed after storm impacts and reemerge during extended periods of calm weather, a coastal behavior that will eventually characterize the entire island chain.

The genomics of selection in dogs and the parallel evolution between dogs and humans.

PubMed

Wang, Guo-dong; Zhai, Weiwei; Yang, He-chuan; Fan, Ruo-xi; Cao, Xue; Zhong, Li; Wang, Lu; Liu, Fei; Wu, Hong; Cheng, Lu-guang; Poyarkov, Andrei D; Poyarkov, Nikolai A; Tang, Shu-sheng; Zhao, Wen-ming; Gao, Yun; Lv, Xue-mei; Irwin, David M; Savolainen, Peter; Wu, Chung-I; Zhang, Ya-ping

2013-01-01

The genetic bases of demographic changes and artificial selection underlying domestication are of great interest in evolutionary biology. Here we perform whole-genome sequencing of multiple grey wolves, Chinese indigenous dogs and dogs of diverse breeds. Demographic analysis show that the split between wolves and Chinese indigenous dogs occurred 32,000 years ago and that the subsequent bottlenecks were mild. Therefore, dogs may have been under human selection over a much longer time than previously concluded, based on molecular data, perhaps by initially scavenging with humans. Population genetic analysis identifies a list of genes under positive selection during domestication, which overlaps extensively with the corresponding list of positively selected genes in humans. Parallel evolution is most apparent in genes for digestion and metabolism, neurological process and cancer. Our study, for the first time, draws together humans and dogs in their recent genomic evolution.

Phylogeny of the TRAF/MATH domain.

PubMed

Zapata, Juan M; Martínez-García, Vanesa; Lefebvre, Sophie

2007-01-01

The TNF-receptor associated factor (TRAF) domain (TD), also known as the meprin and TRAF-C homology (MATH) domain is a fold of seven anti-parallel p-helices that participates in protein-protein interactions. This fold is broadly represented among eukaryotes, where it is found associated with a discrete set of protein-domains. Virtually all protein families encompassing a TRAF/MATH domain seem to be involved in the regulation of protein processing and ubiquitination, strongly suggesting a parallel evolution of the TRAF/MATH domain and certain proteolysis pathways in eukaryotes. The restricted number of living organisms for which we have information of their genetic and protein make-up limits the scope and analysis of the MATH domain in evolution. However, the available information allows us to get a glimpse on the origins, distribution and evolution of the TRAF/MATH domain, which will be overviewed in this chapter.

The modern temperature-accelerated dynamics approach

DOE PAGES

Zamora, Richard J.; Uberuaga, Blas P.; Perez, Danny; ...

2016-06-01

Accelerated molecular dynamics (AMD) is a class of MD-based methods used to simulate atomistic systems in which the metastable state-to-state evolution is slow compared with thermal vibrations. Temperature-accelerated dynamics (TAD) is a particularly efficient AMD procedure in which the predicted evolution is hastened by elevating the temperature of the system and then recovering the correct state-to-state dynamics at the temperature of interest. TAD has been used to study various materials applications, often revealing surprising behavior beyond the reach of direct MD. This success has inspired several algorithmic performance enhancements, as well as the analysis of its mathematical framework. Recently, thesemore » enhancements have leveraged parallel programming techniques to enhance both the spatial and temporal scaling of the traditional approach. Here, we review the ongoing evolution of the modern TAD method and introduce the latest development: speculatively parallel TAD.« less

Three-armed rifts or masked radial pattern of eruptive fissures? The intriguing case of El Hierro volcano (Canary Islands)

NASA Astrophysics Data System (ADS)

Becerril, L.; Galindo, I.; Martí, J.; Gudmundsson, A.

2015-04-01

Using new surface structural data as well as subsurface structural data obtained from seventeen water galleries, we provide a comprehensive model of the volcano-tectonic evolution of El Hierro (Canary Islands). We have identified, measured and analysed more than 1700 volcano-structural elements including vents, eruptive fissures, dykes and faults. The new data provide important information on the main structural patterns of the island and on its stress and strain fields, all of which are crucial for reliable hazard assessments. We conducted temporal and spatial analyses of the main structural elements, focusing on their relative age and association with the three main cycles in the construction of the island: the Tiñor Edifice, the El Golfo-Las Playas Edifice, and the Rift Volcanism. A radial strike distribution, which can be related to constructive episodes, is observed in the on-land structures. A similar strike distribution is seen in the submarine eruptive fissures, which are radial with respect to the centre of the island. However, the volcano-structural elements identified onshore and reflecting the entire volcano-tectonic evolution of the island also show a predominant NE-SW strike, which coincides with the main regional trend of the Canary archipelago as a whole. Two other dominant directions of structural elements, N-S and WNW-ESE, are evident from the establishment of the El Golfo-Las Playas edifice, during the second constructive cycle. We suggest that the radial-striking structures reflect comparatively uniform stress fields during the constructive episodes, mainly conditioned by the combination of overburden pressure, gravitational spreading, and magma-induced stresses in each of the volcanic edifices. By contrast, in the shallower parts of the edifice the NE-SW, N-S and WNW-ESE-striking structures reflect local stress fields related to the formation of mega-landslides and masking the general and regional radial patterns.

Digging up the roots of an insular hotspot of genetic diversity: decoupled mito-nuclear histories in the evolution of the Corsican-Sardinian endemic lizard Podarcis tiliguerta.

PubMed

Salvi, Daniele; Pinho, Catarina; Harris, D James

2017-03-02

Mediterranean islands host a disproportionately high level of biodiversity and endemisms. Growing phylogeographic evidence on island endemics has unveiled unexpectedly complex patterns of intra-island diversification, which originated at diverse spatial and temporal scales. We investigated multilocus genetic variation of the Corsican-Sardinian endemic lizard Podarcis tiliguerta with the aim of shedding more light on the evolutionary processes underlying the origin of Mediterranean island biodiversity. We analysed DNA sequences of mitochondrial (12S and nd4) and nuclear (acm4 and mc1r) gene fragments in 174 individuals of P. tiliguerta from 81 localities across the full range of the species in a geographic and genealogical framework. We found surprisingly high genetic diversity both at mitochondrial and nuclear loci. Seventeen reciprocally monophyletic allopatric mitochondrial haplogroups were sharply divided into four main mitochondrial lineages (two in Corsica and two in Sardinia) of Miocene origin. In contrast, shallow divergence and shared diversity within and between islands was observed at the nuclear loci. We evaluated alternative biogeographic and evolutionary scenarios to explain such profound discordance in spatial and phylogenetic patterning between mitochondrial and nuclear genomes. While neutral models provided unparsimonious explanations for the observed pattern, the hypothesis of environmental selection driving mitochondrial divergence in the presence of nuclear gene flow is favoured. Our study on the genetic variation of P. tiliguerta reveals surprising levels of diversity underlining a complex phylogeographic pattern with a striking example of mito-nuclear discordance. These findings have profound implications, not only for the taxonomy and conservation of P. tiliguerta. Growing evidence on deep mitochondrial breaks in absence of geographic barriers and of climatic factors associated to genetic variation of Corsican-Sardinian endemics warrants additional investigation on the potential role of environmental selection driving the evolution of diversity hotspots within Mediterranean islands.

Mating asymmetry and the direction of evolution in the Hawaiian cricket genus Laupala.

PubMed

Shaw, K L; Lugo, E

2001-03-01

Based on studies from native Hawaiian Drosophila, a model was proposed to explain sexual isolation and mating asymmetry, from which one could potentially infer the 'direction of evolution'. We examined sexual isolation between allopatric cricket species of the genus Laupala, another endemic Hawaiian insect with an elaborate mating system, to begin to explore the nature of sexual isolation and mating asymmetry in closely related Hawaiian organisms. We studied sexual isolation and mating asymmetry in two contrasts. First, an inter-island comparison, including L. makaio from the older island of Maui and L. paranigra from the younger island of Hawaii, and second, an intra-island (Hawaii) comparison, including L. nigra from the older volcano of Mauna Kea and L. paranigra with a primary distribution on the younger volcanoes of Mauna Loa and Kilauea. We used a 'no-choice' experimental design, pairing individual males and females in homospecific or heterospecific combinations. Several behavioural aspects of courtship (proportion of male singing, latency to male singing, production of spermatophores and courtship initiation speed) were quantified as well as the success or failure of matings. We demonstrate asymmetry in sexual isolation between reciprocal combinations of L. makaio and L. paranigra. This result is examined in light of the differences in courtship behaviour manifest in the experiments with these two species. We did not find evidence of asymmetry in sexual isolation between L. nigra and L. paranigra, although differences in courtship initiation speed were evident between reciprocal combinations of these two species. In addition to the geological argument that species on older islands and older volcanoes give rise to species on younger islands and younger volcanoes, we discuss phylogenetic evidence consistent with these biogeographic hypotheses of relationships among the focal taxa. The patterns of asymmetrical sexual isolation and mating asymmetry are consistent with those found in the native Hawaiian Drosophila.

Batteries for autonomous renewable energy systems

NASA Astrophysics Data System (ADS)

Sheridan, Norman R.

Now that the Coconut Island plant has been running successfully for three years, it is appropriate to review the design decisions that were made with regard to the battery and to consider how these might be changed for future systems. The following aspects are discussed: type, package, energy storage, voltage, parallel operation, installation, charging, watering, life and quality assurance.

Chapter 21: Oceanographic Processes and Marine Productivity in Waters Offshore of Marbled Murrelet Breeding Habitat

Treesearch

Jr. Hunt

1995-01-01

Marbled Murrelets (Brachyramphus marmoratus) occupy nearshore waters in the eastern North Pacific Ocean from central California to the Aleutian Islands. The offshore marine ecology of these waters is dominated by a series of currents roughly parallel to the coast that determine marine productivity of shelf waters by influencing the rate of nutrient...

Off Limits to Asian Americans? Predicting the Pursuit of Higher Education Administration

ERIC Educational Resources Information Center

Gin, Deborah Hearn-Chung

2013-01-01

Asian/Pacific Islanders (APIs) in the U.S. have experienced an increase in population, and higher education faculty, rates over the past two decades. However, a parallel increase among API higher education administrators is absent. To explore this disparity, this study surveyed all 180 Asian/Asian North American (AANA) faculty in graduate schools…

The Samoa tsunami of 29 September 2009: Field survey in Tonga and preliminary modeling

NASA Astrophysics Data System (ADS)

Okal, E. A.; Fritz, H. M.; Borrero, J. C.

2010-05-01

The two northernmost islands in Tonga, Niuatoputapu and Tafahi, were hit hard by the Samoa tsunami of 29 September 2009, with considerable devastation on the former, where nine people were killed. A surveying team consisting of HMF and EAO visited the islands in late November. On Niuatoputapu, we document extreme inundation reaching 600 m on the Southern coast, and a complete overrun of the Northeastern tip at Hikuniu Point, with flow depths reaching 10 m for a total wave height of 16 m. The forests were totally destroyed, and apparently provided no barrier to waves of such height. On the small stratovolcano island of Tafahi, run-up reached 22.8 m on the lee side of the island. The three villages of Niuatoputapu were provided a relative level of protection by the fringing coral reef present on the Northern shore. Seven of the nine victims were riding in a pick-up truck on a road parallel to the coast. One point, with run-up of 4 m, was also surveyed on the island of Niuafo'ou, 200 km further West. We present a number of numerical simulations, using several models of the seismic source, which correctly predict enhanced amplitudes in the direction of the Northern Tonga Islands as a result of focusing by shallow bathymetry at the bend marking the Northern end of the Tonga subduction zone.

Modeling Reef Island Morphodynamics in Profile and Plan View

NASA Astrophysics Data System (ADS)

Ashton, A. D.; Ortiz, A. C.; Lorenzo-Trueba, J.

2016-12-01

Reef islands are carbonate detrital landforms perched atop shallow reef flats of atolls and barrier reef systems. Often comprising the only subaerial, inhabitable land of many island chains and island nations, these low-lying, geomorphically active landforms face considerable hazards from climate change. While there hazards include wave overtopping and groundwater salinization, sea-level rise and wave climate change will affect sediment transport and shoreline dynamics, including the possibility for wholesale reorganization of the islands themselves. Here we present a simplified morphodynamic model that can spatially quantify the potential impacts of climate change on reef islands. Using parameterizations of sediment transport pathways and feedbacks from previously presented XBeach modeling results, we investigate how sea-level rise, change in storminess, and different carbonate production rates can affect the profile evolution of reef islands, including feedbacks with the shallow reef flat that bounds the islands offshore (and lagoonward). Model results demonstrate that during rising sea levels, the reef flat can serve as a sediment trap, starving reef islands of detrital sediment that could otherwise fortify the shore against sea-level-rise-driven erosion. On the other hand, if reef flats are currently shallow (likely due to geologic inheritance or biologic cementation processes) such that sea-level rise does not result in sediment accumulation on the flat, reef island shorelines may be more resilient to rising seas. We extend the model in plan view to examine how long-term (decadal) changes in wave approach direction could affect reef island shoreline orientation. We compare model results to historical and geologic change for different case studies on the Marshall Islands. This simplified modeling approach, focusing on boundary dynamics and mass fluxes, provides a quantitative tool to predict the response of reef island environments to climate change.

Pursuing Darwin’s curious parallel: Prospects for a science of cultural evolution

PubMed Central

2017-01-01

In the past few decades, scholars from several disciplines have pursued the curious parallel noted by Darwin between the genetic evolution of species and the cultural evolution of beliefs, skills, knowledge, languages, institutions, and other forms of socially transmitted information. Here, I review current progress in the pursuit of an evolutionary science of culture that is grounded in both biological and evolutionary theory, but also treats culture as more than a proximate mechanism that is directly controlled by genes. Both genetic and cultural evolution can be described as systems of inherited variation that change over time in response to processes such as selection, migration, and drift. Appropriate differences between genetic and cultural change are taken seriously, such as the possibility in the latter of nonrandomly guided variation or transformation, blending inheritance, and one-to-many transmission. The foundation of cultural evolution was laid in the late 20th century with population-genetic style models of cultural microevolution, and the use of phylogenetic methods to reconstruct cultural macroevolution. Since then, there have been major efforts to understand the sociocognitive mechanisms underlying cumulative cultural evolution, the consequences of demography on cultural evolution, the empirical validity of assumed social learning biases, the relative role of transformative and selective processes, and the use of quantitative phylogenetic and multilevel selection models to understand past and present dynamics of society-level change. I conclude by highlighting the interdisciplinary challenges of studying cultural evolution, including its relation to the traditional social sciences and humanities. PMID:28739929

Pursuing Darwin's curious parallel: Prospects for a science of cultural evolution.

PubMed

Mesoudi, Alex

2017-07-24

In the past few decades, scholars from several disciplines have pursued the curious parallel noted by Darwin between the genetic evolution of species and the cultural evolution of beliefs, skills, knowledge, languages, institutions, and other forms of socially transmitted information. Here, I review current progress in the pursuit of an evolutionary science of culture that is grounded in both biological and evolutionary theory, but also treats culture as more than a proximate mechanism that is directly controlled by genes. Both genetic and cultural evolution can be described as systems of inherited variation that change over time in response to processes such as selection, migration, and drift. Appropriate differences between genetic and cultural change are taken seriously, such as the possibility in the latter of nonrandomly guided variation or transformation, blending inheritance, and one-to-many transmission. The foundation of cultural evolution was laid in the late 20th century with population-genetic style models of cultural microevolution, and the use of phylogenetic methods to reconstruct cultural macroevolution. Since then, there have been major efforts to understand the sociocognitive mechanisms underlying cumulative cultural evolution, the consequences of demography on cultural evolution, the empirical validity of assumed social learning biases, the relative role of transformative and selective processes, and the use of quantitative phylogenetic and multilevel selection models to understand past and present dynamics of society-level change. I conclude by highlighting the interdisciplinary challenges of studying cultural evolution, including its relation to the traditional social sciences and humanities.

Formation and evolution of a metasomatized lithospheric root at the motionless Antarctic plate: the case of East Island, Crozet Archipelago (Indian Ocean)

NASA Astrophysics Data System (ADS)

Meyzen, Christine; Marzoli, Andrea; Bellieni, Giuliano; Levresse, Gilles

2016-04-01

Sitting atop the nearly stagnant Antarctic plate (ca. 6.46 mm/yr), the Crozet archipelago midway between Madagascar and Antarctica constitutes a region of unusually shallow (1543-1756 m below sea level) and thickened oceanic crust (10-16.5 km), high geoid height, and deep low-velocity zone, which may reflect the surface expression of a mantle plume. Here, we present new major and trace element data for Quaternary sub-aerial alkali basalts from East Island, the easterly and oldest island (ca. 9 Ma) of the Crozet archipelago. Crystallization at uppermost mantle depth and phenocryst accumulation have strongly affected their parental magma compositions. Their trace element patterns show a large negative K anomaly relative to Ta-La, moderate depletions in Rb and Ba with respect to Th-U, and heavy rare earth element (HREE) depletions relative to light REE. These characteristics allow limits to be placed upon the composition and mineralogy of their mantle source. The average trace element spectrum of East Island basalts can be matched by melting of about 2 % of a garnet-phlogopite-bearing peridotite source. The stability field of phlogopite restricts melting depth to lithospheric levels. The modelled source composition requires a multistage evolution, where the mantle has been depleted by melt extraction before having been metasomatized by alkali-rich plume melts. The depleted mantle component may be sourced by residual mantle plume remnants stagnated at the melting locus due to a weak lateral flow velocity inside the melting regime, whose accumulation progressively edifies a depleted lithospheric root above the plume core. Low-degree alkali-rich melts are likely derived from the plume source. Such a mantle source evolution may be general to both terrestrial and extraterrestrial environments where the lateral component velocity of the mantle flow field is extremely slow.

Four new bat species (Rhinolophus hildebrandtii complex) reflect Plio-Pleistocene divergence of dwarfs and giants across an Afromontane archipelago.

PubMed

Taylor, Peter J; Stoffberg, Samantha; Monadjem, Ara; Schoeman, Martinus Corrie; Bayliss, Julian; Cotterill, Fenton P D

2012-01-01

Gigantism and dwarfism evolve in vertebrates restricted to islands. We describe four new species in the Rhinolophus hildebrandtii species-complex of horseshoe bats, whose evolution has entailed adaptive shifts in body size. We postulate that vicissitudes of palaeoenvironments resulted in gigantism and dwarfism in habitat islands fragmented across eastern and southern Africa. Mitochondrial and nuclear DNA sequences recovered two clades of R. hildebrandtii senso lato which are paraphyletic with respect to a third lineage (R. eloquens). Lineages differ by 7.7 to 9.0% in cytochrome b sequences. Clade 1 includes R. hildebrandtii sensu stricto from the east African highlands and three additional vicariants that speciated across an Afromontane archipelago through the Plio-Pleistocene, extending from the Kenyan Highlands through the Eastern Arc, northern Mozambique and the Zambezi Escarpment to the eastern Great Escarpment of South Africa. Clade 2 comprises one species confined to lowland savanna habitats (Mozambique and Zimbabwe). A third clade comprises R. eloquens from East Africa. Speciation within Clade 1 is associated with fixed differences in echolocation call frequency, and cranial shape and size in populations isolated since the late Pliocene (ca 3.74 Mya). Relative to the intermediate-sized savanna population (Clade 2), these island-populations within Clade 1 are characterised by either gigantism (South African eastern Great Escarpment and Mts Mabu and Inago in Mozambique) or dwarfism (Lutope-Ngolangola Gorge, Zimbabwe and Soutpansberg Mountains, South Africa). Sympatry between divergent clades (Clade 1 and Clade 2) at Lutope-Ngolangola Gorge (NW Zimbabwe) is attributed to recent range expansions. We propose an "Allometric Speciation Hypothesis", which attributes the evolution of this species complex of bats to divergence in constant frequency (CF) sonar calls. The origin of species-specific peak frequencies (overall range = 32 to 46 kHz) represents the allometric effect of adaptive divergence in skull size, represented in the evolution of gigantism and dwarfism in habitat islands.

Four New Bat Species (Rhinolophus hildebrandtii Complex) Reflect Plio-Pleistocene Divergence of Dwarfs and Giants across an Afromontane Archipelago

PubMed Central

Taylor, Peter J.; Stoffberg, Samantha; Monadjem, Ara; Schoeman, Martinus Corrie; Bayliss, Julian; Cotterill, Fenton P. D.

2012-01-01

Gigantism and dwarfism evolve in vertebrates restricted to islands. We describe four new species in the Rhinolophus hildebrandtii species-complex of horseshoe bats, whose evolution has entailed adaptive shifts in body size. We postulate that vicissitudes of palaeoenvironments resulted in gigantism and dwarfism in habitat islands fragmented across eastern and southern Africa. Mitochondrial and nuclear DNA sequences recovered two clades of R. hildebrandtii senso lato which are paraphyletic with respect to a third lineage (R. eloquens). Lineages differ by 7.7 to 9.0% in cytochrome b sequences. Clade 1 includes R. hildebrandtii sensu stricto from the east African highlands and three additional vicariants that speciated across an Afromontane archipelago through the Plio-Pleistocene, extending from the Kenyan Highlands through the Eastern Arc, northern Mozambique and the Zambezi Escarpment to the eastern Great Escarpment of South Africa. Clade 2 comprises one species confined to lowland savanna habitats (Mozambique and Zimbabwe). A third clade comprises R. eloquens from East Africa. Speciation within Clade 1 is associated with fixed differences in echolocation call frequency, and cranial shape and size in populations isolated since the late Pliocene (ca 3.74 Mya). Relative to the intermediate-sized savanna population (Clade 2), these island-populations within Clade 1 are characterised by either gigantism (South African eastern Great Escarpment and Mts Mabu and Inago in Mozambique) or dwarfism (Lutope-Ngolangola Gorge, Zimbabwe and Soutpansberg Mountains, South Africa). Sympatry between divergent clades (Clade 1 and Clade 2) at Lutope-Ngolangola Gorge (NW Zimbabwe) is attributed to recent range expansions. We propose an “Allometric Speciation Hypothesis”, which attributes the evolution of this species complex of bats to divergence in constant frequency (CF) sonar calls. The origin of species-specific peak frequencies (overall range = 32 to 46 kHz) represents the allometric effect of adaptive divergence in skull size, represented in the evolution of gigantism and dwarfism in habitat islands. PMID:22984399

Ground-penetrating radar and differential global positioning system data collected from Long Beach Island, New Jersey, April 2015

USGS Publications Warehouse

Zaremba, Nicholas J.; Smith, Kathryn E.L.; Bishop, James M.; Smith, Christopher G.

2016-08-04

Scientists from the United States Geological Survey, St. Petersburg Coastal and Marine Science Center, U.S. Geological Survey Pacific Coastal and Marine Science Center, and students from the University of Hawaii at Manoa collected sediment cores, sediment surface grab samples, ground-penetrating radar (GPR) and Differential Global Positioning System (DGPS) data from within the Edwin B. Forsythe National Wildlife Refuge–Holgate Unit located on the southern end of Long Beach Island, New Jersey, in April 2015 (FAN 2015-611-FA). The study’s objective was to identify washover deposits in the stratigraphic record to aid in understanding barrier island evolution. This report is an archive of GPR and DGPS data collected from Long Beach Island in 2015. Data products, including raw GPR and processed DGPS data, elevation corrected GPR profiles, and accompanying Federal Geographic Data Committee metadata can be downloaded from the Data Downloads page.

Post-eruptive alteration of silicic ignimbrites and lavas, Gran Canaria, Canary Islands - Strontium, neodymium, lead, and oxygen isotopic evidence

NASA Technical Reports Server (NTRS)

Cousens, Brian L.; Spera, Frank J.; Dobson, Patrick F.

1993-01-01

The isotopic composition of lavas from oceanic islands provides important information about the composition and evolution of the earth's mantle. Isotopic analyses of Miocene comenditic, pantelleritic, and trachyphonolitic ignimbrites and lavas from the Canary islands were performed. Results provide evidence for posteruptive mobility of Rb and Sr during low temperature postemplacement interaction with circulating ground water. Calculated Sr isotope ratios define a magmatic trend in the stratigraph section. 87Sr/86Sr ratios in hydrated vitrophyte and devitrified matrix separates indicate significant posteruptive interaction with meteoric water starting soon after deposition. This process extends patchily through the entire pyroclastic flow and may be ongoing. 87Sr/86Sr ratios determined by whole rock analysis of silicic rocks from oceanic islands are suspect and should not be incorporated into mantle tracer studies. Anorthoclase phenocrysts are resistant to these processes and may produce useful data.

Roughness in the Kolmogorov Johnson Mehl Avrami framework: extension to (2+1)D of the Trofimov Park model

NASA Astrophysics Data System (ADS)

Pacchiarotti, Barbara; Fanfoni, Massimo; Tomellini, Massimo

2005-12-01

In this paper the reformulation of Trofimov-Park (TP) model, [V.I. Trofimov, Appl. Surf. Sci. 219 (2003) 93), of thin film roughness evolution during nucleation and growth of islands in case of simultaneous nucleation is presented. The calculation of TP restricted to one-dimensional triangular islands has been extended to both the one-dimensional elliptical case and to the pyramidal two-dimensional one. The kinetics of the interface width, w, and the height-height autocorrelation function G, through which the correlation length ξ has been defined, have been estimated. Moreover, w(Θ) and ξ(Θ), where Θ is the fraction of the covered substrate, if properly rescaled to the density of nuclei N and to the aspect ratio of islands, are universal functions that, for a conspicuous range of Θ, obey a power law with the exponent depending upon island shape.

Bathymetry of the Wilderness breach at Fire Island, New York, June 2013

USGS Publications Warehouse

Brownell, Andrew T.; Hapke, Cheryl J.; Spore, Nicholas J.; McNinch, Jesse E.

2015-01-01

The U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, collaborated with the U.S. Army Corps of Engineers Field Research Facility in Duck, North Carolina, to collect shallow water bathymetric data of the Wilderness breach on Fire Island, New York, in June 2013. The breach formed in October 2012 during Hurricane Sandy, and the USGS is involved in a post-Sandy effort to map, monitor, and model the morphologic evolution of the breach as part of Hurricane Sandy Supplemental Project GS2-2B: Linking Coastal Vulnerability and Process, Fire Island. This publication includes a bathymetric dataset of the breach and the adjacent nearshore on the ocean side of the island. The objective of the data collection and analysis is to map the bathymetry of the primary breach channel, ebb shoal, and nearshore bar system.

Radar Sounding Investigations at the Boundary of Thwaites and Pine Island Glaciers

NASA Astrophysics Data System (ADS)

Schroeder, Dustin; Hilger, Andrew; Paden, John; Corr, Hugh; Blankenship, Donald

2017-04-01

Recent observational and modeling studies have shown that the behavior and stability of both Thwaites Glacier and Pine Island Glacier in the Amundsen Sea Embayment of the West Antarctic Ice Sheet are modulated by a combination of ocean forcing, bed topography, and basal conditions. In terms of future deglaciation scenarios and their ultimate sea level contribution, the configuration, evolution, and ice-dynamical impact of basal conditions in the boundary region between Thwaites Glacier and Pine Island Glacier stand to play a particularly significant role. This region not only separates the two most rapidly changing glaciers in Antarctica, but - as a result - also has the potential to be the site of dynamic and destabilizing interactions between them as either glacier retreats. Despite this potential, little research has focused on characterizing the basal condition context for modeling current and potential interaction across this boundary. One reason for this is the fact that (despite relatively dense airborne radar sounding coverage in the area) the data in this region was collected by three different radar systems and much of the Thwaites / Pine Island boundary lies at the boundary of these data sets. These include the 2004 survey of Thwaites Glacier by the UTIG HiCARS system, the 2004 campaign over Pine Island Glacier by the BAS PASIN system, and the 2011 - 2014 surveys of the Amundsen Sea Embayment by the CReSIS MCoRDS system. This has resulted in distinct sets of observations, collected across a range of frequencies, bandwidths, coherency, and observing geometries. To date, these data have also been processed by different institutions with software, algorithms and approaches that were specifically developed for each radar system. While each produce consistent ice thickness measurements, the character of their bed echoes have yet to be exploited. Here, we present initial results from processing, analyzing, and synthesizing these three distinct data sets to characterize basal conditions for modeling and interpretation across boundary between Thwaites and Pine Island. These results highlight the significance of conditions beneath the Southwest Tributary of Pine Island, the Eastern Shear Margin of Thwaites, and the Bentley Subglacial Trench for the behavior, evolution, and stability of the Amundsen Sea sector.

Coastal single-beam bathymetry data collected in 2015 from the Chandeleur Islands, Louisiana

USGS Publications Warehouse

Stalk, Chelsea A.; DeWitt, Nancy T.; Bernier, Julie C.; Kindinger, Jack G.; Flocks, James G.; Miselis, Jennifer L.; Locker, Stanley D.; Kelso, Kyle W.; Tuten, Thomas M.

2017-02-23

As part of the Louisiana Coastal Protection and Restoration Authority (CPRA) Barrier Island Comprehensive Monitoring Program, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted a single-beam bathymetry survey around the Chandeleur Islands, Louisiana, in June 2015. The goal of the program is to provide long-term data on Louisiana’s barrier islands and use this data to plan, design, evaluate, and maintain current and future barrier island restoration projects. The data described in this report, along with (1) USGS bathymetry data collected in 2013 as a part of the Barrier Island Evolution Research project covering the northern Chandeleur Islands, and (2) data collected in 2014 in collaboration with the Louisiana CPRA Barrier Island Comprehensive Monitoring Program around Breton Island, will be used to assess bathymetric change since 2006‒2007 as well as serve as a bathymetric control in supporting modeling of future changes in response to restoration and storm impacts. The survey area encompasses approximately 435 square kilometers of nearshore and back-barrier environments around Hewes Point, the Chandeleur Islands, and Curlew and Grand Gosier Shoals. This Data Series serves as an archive of processed single-beam bathymetry data, collected in the nearshore of the Chandeleur Islands, Louisiana, from June 17‒24, 2015, during USGS Field Activity Number 2015-317-FA. Geographic information system data products include a 200-meter-cell-size interpolated bathymetry grid, trackline maps, and xyz point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata.

Application of environmental tracers to mixing, evolution, and nitrate contamination of ground water in Jeju Island, Korea

USGS Publications Warehouse

Koh, D.-C.; Plummer, Niel; Kip, Solomon D.; Busenberg, E.; Kim, Y.-J.; Chang, H.-W.

2006-01-01

Tritium/helium-3 (3H/3He) and chlorofluorocarbons (CFCs) were investigated as environmental tracers in ground water from Jeju Island (Republic of Korea), a basaltic volcanic island. Ground-water mixing was evaluated by comparing 3H and CFC-12 concentrations with lumped-parameter dispersion models, which distinguished old water recharged before the 1950s with negligible 3H and CFC-12 from younger water. Low 3H levels in a considerable number of samples cannot be explained by the mixing models, and were interpreted as binary mixing of old and younger water; a process also identified in alkalinity and pH of ground water. The ground-water CFC-12 age is much older in water from wells completed in confined zones of the hydro-volcanic Seogwipo Formation in coastal areas than in water from the basaltic aquifer. Major cation concentrations are much higher in young water with high nitrate than those in uncontaminated old water. Chemical evolution of ground water resulting from silicate weathering in basaltic rocks reaches the zeolite-smectite phase boundary. The calcite saturation state of ground water increases with the CFC-12 apparent (piston flow) age. In agricultural areas, the temporal trend of nitrate concentration in ground water is consistent with the known history of chemical fertilizer use on the island, but increase of nitrate concentration in ground water is more abrupt after the late 1970s compared with the exponential growth of nitrogen inputs. ?? 2005 Elsevier B.V. All rights reserved.

Re-visiting the evolution, dispersal and epidemiology of Zika virus in Asia.

PubMed

Pettersson, John H-O; Bohlin, Jon; Dupont-Rouzeyrol, Myrielle; Brynildsrud, Ola B; Alfsnes, Kristian; Cao-Lormeau, Van-Mai; Gaunt, Michael W; Falconar, Andrew K; de Lamballerie, Xavier; Eldholm, Vegard; Musso, Didier; Gould, Ernest A

2018-05-09

Based on serological evidence and viral isolation, Zika virus (ZIKV) has circulated for many years relatively benignly in a sylvatic cycle in Africa and an urban cycle in South East Asia (SEA). With the recent availability of limited but novel Indian ZIKV sequences to add to the plethora of SEA sequences, we traced the phylogenetic history and spatio-temporal dispersal pattern of ZIKV in Asia prior to its explosive emergence in the Pacific region and the Americas. These analyses demonstrated that the introduction and dispersal of ZIKV on the Pacific islands were preceded by an extended period of relatively silent transmission in SEA, enabling the virus to expand geographically and evolve adaptively before its unanticipated introduction to immunologically naive populations on the Pacific islands and in the Americas. Our findings reveal new features of the evolution and dispersal of this intriguing virus and may benefit future disease control strategies.

Fracture and damage localization in volcanic edifice rocks from El Hierro, Stromboli and Tenerife.

PubMed

Harnett, Claire E; Benson, Philip M; Rowley, Pete; Fazio, Marco

2018-01-31

We present elastic wave velocity and strength data from a suite of three volcanic rocks taken from the volcanic edifices of El Hierro and Tenerife (Canary Islands, Spain), and Stromboli (Aeolian Islands, Italy). These rocks span a range of porosity and are taken from volcanoes that suffer from edifice instability. We measure elastic wave velocities at known incident angles to the generated through-going fault as a function of imposed strain, and examine the effect of the damage zone on P-wave velocity. Such data are important as field measurements of elastic wave tomography are key tools for understanding volcanic regions, yet hidden fractures are likely to have a significant effect on elastic wave velocity. We then use elastic wave velocity evolution to calculate concomitant crack density evolution which ranges from 0 to 0.17: highest values were correlated to the damage zone in rocks with the highest initial porosity.

Driving forces behind the evolution of the Aleutian mink disease parvovirus in the context of intensive farming.

PubMed

Canuti, Marta; O'Leary, Kimberly E; Hunter, Bruce D; Spearman, Grant; Ojkic, Davor; Whitney, Hugh G; Lang, Andrew S

2016-01-01

Aleutian mink disease virus (AMDV) causes plasmacytosis, an immune complex-associated syndrome that affects wild and farmed mink. The virus can also infect other small mammals (e.g., ferrets, skunks, ermines, and raccoons), but the disease in these hosts has been studied less. In 2007, a mink plasmacytosis outbreak began on the Island of Newfoundland, and the virus has been endemic in farms since then. In this study, we evaluated the molecular epidemiology of AMDV in farmed and wild animals of Newfoundland since before the beginning of the outbreak and investigated the epidemic in a global context by studying AMDV worldwide, thereby examining its diffusion and phylogeography. Furthermore, AMDV evolution was examined in the context of intensive farming, where host population dynamics strongly influence viral evolution. Partial NS1 sequences and several complete genomes were obtained from Newfoundland viruses and analyzed along with numerous sequences from other locations worldwide that were either obtained as part of this study or from public databases. We observed very high viral diversity within Newfoundland and within single farms, where high rates of co-infection, recombinant viruses and polymorphisms were observed within single infected individuals. Worldwide, we documented a partial geographic distribution of strains, where viruses from different countries co-exist within clades but form country-specific subclades. Finally, we observed the occurrence of recombination and the predominance of negative selection pressure on AMDV proteins. A surprisingly low number of immunoepitopic sites were under diversifying pressure, possibly because AMDV gains no benefit by escaping the immune response as viral entry into target cells is mediated through interactions with antibodies, which therefore contribute to cell infection. In conclusion, the high prevalence of AMDV in farms facilitates the establishment of co-infections that can favor the occurrence of recombination and enhance viral diversity. Viruses are then exchanged between different farms and countries and can be introduced into the wild, with the rapidly evolving viruses producing many parallel lineages.

Chasing boundaries and cascade effects in a coupled barrier - marshes - lagoon system

NASA Astrophysics Data System (ADS)

Lorenzo Trueba, J.; Mariotti, G.

2015-12-01

Low-lying coasts are often characterized by barriers islands, shore-parallel stretches of sand separated from the mainland by marshes and lagoons. We built an exploratory numerical model to examine the morphological feedbacks within an idealized barrier - marshes -lagoon system and predict its evolution under projected rates of sea level rise and sediment supply to the backbarrier environment. Our starting point is a recently developed morphodynamic model, which couples shoreface evolution and overwash processes in a dynamic framework. As such, the model is able to capture dynamics not reproduced by morphokinematic models, which advect geometries without specific concern to processes. These dynamics include periodic barrier retreat due to time lags in the shoreface response to barrier overwash, height drowning due to insufficient overwash fluxes as sea level rises, and width drowning, which occurs when the shoreface response rate is insufficient to maintain the barrier geometry during overwash-driven landward migration. We extended the model by coupling the barrier model with a model for the evolution of the marsh platform and the boundary between the marsh and the adjacent lagoon. The coupled model explicitly describes marsh edge processes and accounts for the modification of the wave regime associated with lagoon width (fetch). Model results demonstrate that changes in factors that are not typically associated with the dynamics of coastal barriers, such as the lagoon width and the rate of export/import of sediments from and to the lagoon, can lead to previously unidentified complex responses of the coupled system. In particular, a wider lagoon in the backbarrier, and/or a reduction in the supply of muddy sediments to the backbarrier, can increase barrier retreat rates and even trigger barrier drowning. Overall, our findings highlight the importance of incorporating backbarrier dynamics in models that aim at predicting the response of barrier systems.

Seismic Stratigraphy of the Ross Island Flexural Basin, West Antarctica

NASA Astrophysics Data System (ADS)

Wenman, C. P.; Harry, D. L.; Jha, S.

2014-12-01

Marine seismic reflection data collected over the past 30+ years in the Ross Sea region of southwest Antarctica has been tied to the ANDRILL and CIROS boreholes to develop a seismic stratigraphic model that constrains the spatial and temporal evolution of the flexural basin surrounding Ross Island. Ross Island was formed from 4.6 Ma to present by extrusive volcanism in the Ross Sea at the southern end of the Terror Rift. Preliminary mapping has identified a hinge zone trending northeastward from Mt. Bird, separating the well-developed flexural moat on the west side of the island from sub-horizontal strata on the northeast and east sides. The flexural moat on the west and north-northwest sides of the island is approximately 40-45 km wide with sediment fill thickness of roughly 1100 m. Seismic lines to the east and northeast of the island do not indicate the presence of a flexural moat. Instead, the thickness of strata on the east side of the island that are time-equivalent to the infill of the flexural moat on the west side remains constant from the Coulman High westward to within ~28 km of Ross Island (the landward extent of the seismic data coverage). The concordant post-Miocene strata on the east and northeast sides of Ross Island imply either that the flexural basin does not extend more than ~28 km eastward from the Ross Island shoreline, or that the flexural basin is not present on that side of the island. The first scenario requires that the elastic strength of the lithosphere differ on either side of the hinge. The second scenario can be explained by a mechanical rupture in the lithosphere beneath Ross Island, with Ross Island acting as an end-load on a mechanical half-plate that forms the lithosphere beneath Ross Island and westward. In this model, the lithosphere east of Ross Island and the hinge forms a second half-plate, bearing little or none of the Ross Island volcanic load.

Creationism as a Misconception: Socio-Cognitive Conflict in the Teaching of Evolution

ERIC Educational Resources Information Center

Foster, Colin

2012-01-01

This position paper argues that students' understanding and acceptance of evolution may be supported, rather than hindered, by classroom discussion of creationism. Parallels are drawn between creationism and other scientific misconceptions, both of the scientific community in the past and of students in the present. Science teachers frequently…

A low-altitude mechanism for mesoscale dynamics, structure, and current filamentation in the discrete aurora

NASA Technical Reports Server (NTRS)

Keskinen, M. J.; Chaturvedi, P. K.; Ossakow, S. L.

1992-01-01

The 2D nonlinear evolution of the ionization-driven adiabatic auroral arc instability is studied. We find: (1) the adiabatic auroral arc instability can fully develop on time scales of tens to hundreds of seconds and on spatial scales of tens to hundreds of kilometers; (2) the evolution of this instability leads to nonlinear 'hook-shaped' conductivity structures: (3) this instability can lead to parallel current filamentation over a wide range of scale sizes; and (4) the k-spectra of the density, electric field, and parallel current develop into inverse power laws in agreement with satellite observations. Comparison with mesoscale auroral phenomenology and current filamentation structures is made.

Variations in barrier-island evolution at millennial and decadal time scales related to underlying geology, Onslow Beach, NC USA

NASA Astrophysics Data System (ADS)

Yu, W.; Hood, D.; Browne, R.; Rodriguez, A. B.

2010-12-01

Located midway between Cape Fear and Cape Lookout, North Carolina, Onslow Beach is a 12 km-long barrier island, which historically had transgressive and stable profiles on the southern and northern ends, respectively. The northern half of the island has well-developed dunes in front of maritime forest. The southern half is low-lying and is characterized by washover fans infringing on salt marsh. By studying the underlying barrier lithology and structure, we will determine the evolution of the island at millennial time scales and in turn address whether the along-beach variations in barrier morphology and the historical shoreline-movement trends are related to the underlying geology. We collected 33 vibracores along 7 cross-shore transects spaced equally along Onslow Beach. Variations in topography were measured along these transects using an RTK-GPS. Cores collected from southern transects revealed multiple marsh-overwash sequences overlying estuarine deposits or a highly compacted unit typically composed of gray clay or brown medium to fine grained sand, possibly of Pleistocene age. The contact between this Pleistocene unit and the overlying estuarine deposits or thin peat layer represents the initial inundation of the area in response to Holocene sea-level rise. The elevation of this contact decreases towards the north along the island to a point where our coring methods could not penetrate deep enough to sample it (>4.0 m below the surface). In addition, marsh deposits sampled in the north below the island, which range from 30-120cm, were commonly found to be thicker than the marsh deposits sampled in the south, which range from 10-30 cm. These thick back-barrier units in the north preserve paleo overwash events as fining-upward sequences and likely accreted and were preserved due to the large accommodation space that the deep Pleistocene surface provided. The stratigraphy of the northern cores indicates a less stable Island in the past dominated by overwash. These thick sandy overwash sediments could have served as a localized source for sand that contributed to this part of the barrier becoming more stable than the southern part of the barrier as the rate of sea-level rise decreased. The cores from the highly erosive southern end of the island suggest a persistent unstable island continually dominated by overwash processes and a transgressing shoreline. These data suggests that the Pleistocene surface had a great influence on the transgressive history and contrasting morphologies on either ends of the island. Carbon dating of the Pleistocene and marsh units in future research will constrain when the island formed and the rate of change in depositional environments.

Draft Supplement to the Environmental Statement Fiscal Year 1975 Proposed Program : Facility Location Evaluation for San Juan Island Service : Decatur Land Line and East Lopez Island Substation Study Area 74-7.

DOE Office of Scientific and Technical Information (OSTI.GOV)

United States. Bonneville Power Administration.

1974-03-08

Proposed construction of a 1.7-mile 34.5-kV double-circuit transmission line crossing Decatur Island from east to west. The new line would replace 0.7 of a mile of an existing BPA 24.5-kV line and would then parallel and existing 24.5-kV line for a distance of 1.0 mile. The proposal also requires the construction of a new substation to be located on the eastern side of Lopez Island, Washington. The additional easement required for the proposed transmission line would remove about 1.1 acres of forestland from timber production diverting it to nonforest uses compatable with the transmission line right-of-way. Depending upon the actualmore » site location the Lopez Island Substation could remove from 1 to 3.2 acres of forestland and 2 acres of pastureland from production. Disturbance of game in the immediate vicintiy of the transmission facilities will occur during construction, as will some soil erosion primarily during and immediately after construction, siltation in nearby streams, disturbance of nearby residents from noise and dust during construction, and some degradation of AM reception immediately adjacent to the right-of-way. 7 figs.« less

Bottlenecks and multiple introductions: Population genetics of the vector of avian malaria in Hawaii

USGS Publications Warehouse

Fonseca, Dina M.; LaPointe, Dennis A.; Fleischer, Robert C.

2000-01-01

Avian malaria has had a profound impact on the demographics and behaviour of Hawaiian forest birds since its vector, Culex quinquefasciatusthe southern house mosquito, was first introduced to Hawaii around 1830. In order to understand the dynamics of the disease in Hawaii and gain insights into the evolution of vector-mediated parasite–host interactions in general we studied the population genetics of Cx. quinquefasciatus in the Hawaiian Islands. We used both microsatellite and mitochondrial loci. Not surprisingly we found that mosquitoes in Midway, a small island in the Western group, are quite distinct from the populations in the main Hawaiian Islands. However, we also found that in general mosquito populations are relatively isolated even among the main islands, in particular between Hawaii (the Big Island) and the remaining Hawaiian Islands. We found evidence of bottlenecks among populations within the Big Island and an excess of alleles in Maui, the site of the original introduction. The mitochondrial diversity was typically low but higher than expected. The current distribution of mitochondrial haplotypes combined with the microsatellite information lead us to conclude that there have been several introductions and to speculate on some processes that may be responsible for the current population genetics of vectors of avian malaria in Hawaii.

Hydrochemical analysis to evaluate the seawater ingress in a small coral island of India.

PubMed

Banerjee, Pallavi; Singh, V S; Singh, Ajay; Prasad, R K; Rangarajan, R

2012-06-01

The sustainable development of the limited groundwater resources in the tropical island requires a thorough understanding of detail hydrogeological regime including the hydrochemical behavior of groundwater. Detail analysis of chemical data of groundwater helps in assessing the different groundwater zone affected by formation as well as sea water. Groundwater and saline water interaction is better understood using groundwater major ion chemistry over an island aquifer. Multivariate methods to analyze the geochemical data are used to understand geochemical evolution of groundwater. The methods are successfully used to group the data to evaluate influence of various environs in the study area. Various classification methods such as piper, correlation method, and salinity hazard measurements are also employed to critical study of geochemical characteristics of groundwater to identify vulnerable parts of the aquifer. These approaches have been used to successfully evaluate the aquifer zones of a tiny island off the west coast of India. The most part of island is found to be safe for drinking, however some parts of island are identified that are affected by sea water ingress and dissolution of formation minerals. The analysis has successfully leaded to identification of that part of aquifer on the island which needs immediate attention for restoration and avoids further deterioration.

Biology of Three ICE Families: SXT/R391, ICEBs1, and ICESt1/ICESt3.

PubMed

Carraro, Nicolas; Burrus, Vincent

2014-12-01

Integrative and Conjugative Elements (ICEs) are bacterial mobile genetic elements that play a key role in bacterial genomes dynamics and evolution. ICEs are widely distributed among virtually all bacterial genera. Recent extensive studies have unraveled their high diversity and complexity. The present review depicts the general conserved features of ICEs and describes more precisely three major families of ICEs that have been extensively studied in the past decade for their biology, their evolution and their impact on genomes dynamics. First, the large SXT/R391 family of ICEs disseminates antibiotic resistance genes and drives the exchange of mobilizable genomic islands (MGIs) between many enteric pathogens such as Vibrio cholerae. Second, ICEBs1 of Bacillus subtilis is the most well understood ICE of Gram-positive bacteria, notably regarding the regulation of its dissemination and its initially unforeseen extrachromosomal replication, which could be a common feature of ICEs of both Gram-positive and Gram-negative bacteria. Finally, ICESt1 and ICESt3 of Streptococcus thermophilus are the prototypes of a large family of ICEs widely distributed among various streptococci. These ICEs carry an original regulation module that associates regulators related to those of both SXT/R391 and ICEBs1. Study of ICESt1 and ICESt3 uncovered the cis-mobilization of related genomic islands (CIMEs) by a mechanism called accretion-mobilization, which likely represents a paradigm for the evolution of many ICEs and genomic islands. These three major families of ICEs give a glimpse about ICEs dynamics and their high impact on bacterial adaptation.

Emergence and evolution of Santa Maria Island (Azores)—The conundrum of uplifted islands revisited

USGS Publications Warehouse

Ramalho, Ricardo; Helffrich, George; Madeira, Jose; Cosca, Michael A.; Thomas, Christine; Quartau, Rui; Hipolito, Ana; Rovere, Alessio; Hearty, Paul; Avila, Sergio

2017-01-01

The growth and decay of ocean-island volcanoes are intrinsically linked to vertical movements. While the causes for subsidence are better understood, uplift mechanisms remain enigmatic. Santa Maria Island in the Azores Archipelago is an ocean-island volcano resting on top of young lithosphere, barely 480 km away from the Mid-Atlantic Ridge. Like most other Azorean islands, Santa Maria should be experiencing subsidence. Yet, several features indicate an uplift trend instead. In this paper, we reconstruct the evolutionary history of Santa Maria with respect to the timing and magnitude of its vertical movements, using detailed field work and 40Ar/39Ar geochronology. Our investigations revealed a complex evolutionary history spanning ∼6 m.y., with subsidence up to ca. 3.5 Ma followed by uplift extending to the present day. The fact that an island located in young lithosphere experienced a pronounced uplift trend is remarkable and raises important questions concerning possible uplift mechanisms. Localized uplift in response to the tectonic regime affecting the southeastern tip of the Azores Plateau is unlikely, since the area is under transtension. Our analysis shows that the only viable mechanism able to explain the uplift is crustal thickening by basal intrusions, suggesting that intrusive processes play a significant role even on islands standing on young lithosphere, such as in the Azores.

Multi-field/-scale interactions of turbulence with neoclassical tearing mode magnetic islands in the DIII-D tokamak

DOE PAGES

Bardoczi, Laszlo; Rhodes, Terry L.; Navarro, Alejandro Banon; ...

2017-03-03

We present the first localized measurements of long and intermediate wavelength turbulent density fluctuations (more » $$\\sim\\atop{n}$$) and long wavelength turbulent electron temperature fluctuations ($$\\sim\\atop{T}$$ e) modified by m/n = 2/1 Neoclassical Tearing Mode (NTM) islands (m and n are the poloidal and toroidal mode numbers, respectively). These long and intermediate wavelengths correspond to the expected Ion Temperature Gradient and Trapped Electron Mode scales, respectively. Two regimes have been observed when tracking $$\\sim\\atop{n}$$ during NTM evolution: (1) small islands are characterized by a steep T e radial profile and turbulence levels comparable to those of the background; (2) large islands have a flat T e profile and reduced turbulence level at the O-point. Radially outside the large island, the T e profile is steeper and the turbulence level increased compared to the no or small island case. Reduced turbulence at the O-point compared to the X-point leads to a 15% modulation of $$\\sim\\atop{n}$$ 2 across the island that is nearly in phase with the T e modulation. Qualitative comparisons to the GENE non-linear gyrokinetic code are promising with GENE replicating the observed scaling of turbulence modification with island size. Furthermore, these results are significant as they allow the validation of gyrokinetic simulations modeling the interaction of these multi-scale phenomena.« less

Generation and evolution of anisotropic turbulence and related energy transfer in a multi-species solar wind

NASA Astrophysics Data System (ADS)

Maneva, Yana; Poedts, Stefaan

2017-04-01

The electromagnetic fluctuations in the solar wind represent a zoo of plasma waves with different properties, whose wavelengths range from largest fluid scales to the smallest dissipation scales. By nature the power spectrum of the magnetic fluctuations is anisotropic with different spectral slopes in parallel and perpendicular directions with respect to the background magnetic field. Furthermore, the magnetic field power spectra steepen as one moves from the inertial to the dissipation range and we observe multiple spectral breaks with different slopes in parallel and perpendicular direction at the ion scales and beyond. The turbulent dissipation of magnetic field fluctuations at the sub-ion scales is believed to go into local ion heating and acceleration, so that the spectral breaks are typically associated with particle energization. The gained energy can be in the form of anisotropic heating, formation of non-thermal features in the particle velocity distributions functions, and redistribution of the differential acceleration between the different ion populations. To study the relation between the evolution of the anisotropic turbulent spectra and the particle heating at the ion and sub-ion scales we perform a series of 2.5D hybrid simulations in a collisionless drifting proton-alpha plasma. We neglect the fast electron dynamics and treat the electrons as an isothermal fluid electrons, whereas the protons and a minor population of alpha particles are evolved in a fully kinetic manner. We start with a given wave spectrum and study the evolution of the magnetic field spectral slopes as a function of the parallel and perpendicular wave¬numbers. Simultaneously, we track the particle response and the energy exchange between the parallel and perpendicular scales. We observe anisotropic behavior of the turbulent power spectra with steeper slopes along the dominant energy-containing direction. This means that for parallel and quasi-parallel waves we have steeper spectral slope in parallel direction, whereas for highly oblique waves the dissipation occurs predominantly in perpendicular direction and the spectral slopes are steeper across the background magnetic field. The value of the spectral slopes depends on the angle of propagation, the spectral range, as well as the plasma properties. In general the dissipation is stronger at small scales and the corresponding spectral slopes there are steeper. For parallel and quasi-parallel propagation the prevailing energy cascade remains along the magnetic field, whereas for initially isotropic oblique turbulence the cascade develops mainly in perpendicular direction.

A Parallel Genetic Algorithm for Automated Electronic Circuit Design

NASA Technical Reports Server (NTRS)

Lohn, Jason D.; Colombano, Silvano P.; Haith, Gary L.; Stassinopoulos, Dimitris; Norvig, Peter (Technical Monitor)

2000-01-01

We describe a parallel genetic algorithm (GA) that automatically generates circuit designs using evolutionary search. A circuit-construction programming language is introduced and we show how evolution can generate practical analog circuit designs. Our system allows circuit size (number of devices), circuit topology, and device values to be evolved. We present experimental results as applied to analog filter and amplifier design tasks.

Genetic Parallel Programming: design and implementation.

PubMed

Cheang, Sin Man; Leung, Kwong Sak; Lee, Kin Hong

2006-01-01

This paper presents a novel Genetic Parallel Programming (GPP) paradigm for evolving parallel programs running on a Multi-Arithmetic-Logic-Unit (Multi-ALU) Processor (MAP). The MAP is a Multiple Instruction-streams, Multiple Data-streams (MIMD), general-purpose register machine that can be implemented on modern Very Large-Scale Integrated Circuits (VLSIs) in order to evaluate genetic programs at high speed. For human programmers, writing parallel programs is more difficult than writing sequential programs. However, experimental results show that GPP evolves parallel programs with less computational effort than that of their sequential counterparts. It creates a new approach to evolving a feasible problem solution in parallel program form and then serializes it into a sequential program if required. The effectiveness and efficiency of GPP are investigated using a suite of 14 well-studied benchmark problems. Experimental results show that GPP speeds up evolution substantially.

Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations.

PubMed

Tobler, Ray; Hermisson, Joachim; Schlötterer, Christian

2015-07-01

Thermal stress is a pervasive selective agent in natural populations that impacts organismal growth, survival, and reproduction. Drosophila melanogaster exhibits a variety of putatively adaptive phenotypic responses to thermal stress in natural and experimental settings; however, accompanying assessments of fitness are typically lacking. Here, we quantify changes in fitness and known thermal tolerance traits in replicated experimental D. melanogaster populations following more than 40 generations of evolution to either cyclic cold or hot temperatures. By evaluating fitness for both evolved populations alongside a reconstituted starting population, we show that the evolved populations were the best adapted within their respective thermal environments. More strikingly, the evolved populations exhibited increased fitness in both environments and improved resistance to both acute heat and cold stress. This unexpected parallel response appeared to be an adaptation to the rapid temperature changes that drove the cycling thermal regimes, as parallel fitness changes were not observed when tested in a constant thermal environment. Our results add to a small, but growing group of studies that demonstrate the importance of fluctuating temperature changes for thermal adaptation and highlight the need for additional work in this area. © 2015 The Author(s). Evolution published by Wiley Periodicals, Inc. on behalf of The Society for the Study of Evolution.

Sand Resources, Regional Geology, and Coastal Processes of the Chandeleur Islands Coastal System: an Evaluation of the Breton National Wildlife Refuge

USGS Publications Warehouse

Lavoie, Dawn

2009-01-01

Breton National Wildlife Refuge, the Chandeleur Islands chain in Louisiana, provides habitat and nesting areas for wildlife and is an initial barrier protecting New Orleans from storms. The U.S. Geological Survey (USGS) in partnership with the University of New Orleans Pontchartrain Institute for Environmental Sciences undertook an intensive study that included (1) an analysis of island change based on historical maps and remotely sensed shoreline and topographic data; (2) a series of lidar surveys at 3- to 4-month intervals after Hurricane Katrina to determine barrier island recovery potential; (3) a discussion of sea level rise and effects on the islands; (4) an analysis of sea floor evolution and sediment dynamics in the refuge over the past 150 years; (5) an assessment of the local sediment transport and sediment resource availability based on the bathymetric and subbottom data; (6) a carefully selected core collection effort to groundtruth the geophysical data and more fully characterize the sediments composing the islands and surrounds; (7) an additional survey of the St. Bernard Shoals to assess their potential as a sand resource; and (8) a modeling study to numerically simulate the potential response of the islands to the low-intensity, intermediate, and extreme events likely to affect the refuge over the next 50 years. Results indicate that the islands have become fragmented and greatly diminished in subaerial extent over time: the southern islands retreating landward as they reorganize into subaerial features, the northern islands remaining in place. Breton Island, because maintenance of the Mississippi River-Gulf Outlet (MRGO) outer bar channel requires dredging, is deprived of sand sufficient to sustain itself. Regional sediment transport trends indicate that large storms are extremely effective in transporting sand and controlling the shoreline development and barrier island geometry. Sand is transported north and south from a divergent zone near Monkey Bayou at the southern end of the Chandeleur Islands. Numerical simulation of waves and sediment transport supports the geophysical results and indicates that vast areas of the lower shoreface are affected and are undergoing erosion during storm events, that there is little or no fair weather mechanism to rework material into the littoral system, and that as a result, there is a net loss of sediment from the system. Lidar surveys revealed that the island chain immediately after Hurricane Katrina lost about 84 percent of its area and about 92 percent of its prestorm volume. Marsh platforms that supported the islands' sand prior to the storm were reduced in width by more than one-half. Repeated lidar surveys document that in places the shoreline has retreated about 100 m under the relatively low-energy waves since Hurricanes Katrina and Rita; however, this retreat is nonuniform. Recent high-resolution geophysical surveys of the sea floor and subsurface within 5-6 km of the Chandeleur Islands during 2006 and 2007 show that, in addition to the sand that is rebuilding portions of the island chain, a large volume of sand is contained in Hewes Point, in an extensive subtidal spit platform that has formed at the northern end of the Chandeleur Islands. Hewes Point appears to be the depositional terminus of the alongshore transport system. In the southern Chandeleurs, sand is being deposited in a broad tabular deposit near Breton Island called the southern offshore sand sheet. These two depocenters account for approximately 70 percent of the estimated sediment volume located in potential borrow sites. An additional large potential source of sand for restoration lies in the St. Bernard Shoals, which are estimated to contain approximately 200 ? 106 m3 of sand. Successful restoration planning for the Breton National Wildlife Refuge should mimic the natural processes of early stages of barrier island evolution including lateral transport to the flanks of the island chain

Ship-wave-shaped wave clouds induced by Kuril Islands

NASA Image and Video Library

2015-06-09

The Kuril Islands are a string of volcanically-formed islands that stretch between Russia and Japan, separating the North Pacific Ocean from the Sea of Okhotsk. Subject to the cold, moist breezes from the North Atlantic, and the frigid air from Siberia, the climate is severe, with frequent storms, and ever-present winds, which often reach hurricane strength. Cloudy, windy conditions are common. On June 1, 2015 the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard NASA’s Aqua satellite captured this true-color image as it passed over the Kuril Islands. Clouds curl into the center of a storm system, bringing strong winds to the region. As the winds scrape over the tall volcanic peaks of the Kuril Islands, they become turbulent air behind the islands. The turbulence disturbs the cloudbank, etching its passage into a striking pattern that can be seen from space. This particular pattern is called “ship-waved-shaped wave clouds”, because the pattern can be likened to that formed behind a ship cutting through a smooth ocean. On the windward side of the Kuril Islands, the cloud bank is generally smooth, with streaks that are lined up parallel to the movement of the wind, blowing from the west and towards the east. Behind the tall volcanic peaks of the islands, V’s fan out on the leeward side, illustrating the flow of the turbulent air. Image Credit: Jeff Schmaltz, MODIS Land Rapid Response Team, NASA GSFC NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

On the electron dynamics during island coalescence in asymmetric magnetic reconnection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cazzola, E., E-mail: emanuele.cazzola@wis.kuleuven.be; Innocenti, M. E., E-mail: mariaelena.innocenti@wis.kuleuven.be; Lapenta, G., E-mail: giovanni.lapenta@wis.kuleuven.be

We present an analysis of the electron dynamics during rapid island merging in asymmetric magnetic reconnection. We consider a doubly periodic system with two asymmetric transitions. The upper layer is an asymmetric Harris sheet of finite width perturbed initially to promote a single reconnection site. The lower layer is a tangential discontinuity that promotes the formation of many X-points, separated by rapidly merging islands. Across both layers, the magnetic field and the density have a strong jump, but the pressure is held constant. Our analysis focuses on the consequences of electron energization during island coalescence. We focus first on themore » parallel and perpendicular components of the electron temperature to establish the presence of possible anisotropies and non-gyrotropies. Thanks to the direct comparison between the two different layers simulated, we can distinguish three main types of behavior characteristic of three different regions of interest. The first type represents the regions where traditional asymmetric reconnections take place without involving island merging. The second type of regions instead shows reconnection events between two merging islands. Finally, the third regions identify the regions between two diverging island and where typical signature of reconnection is not observed. Electrons in these latter regions additionally show a flat-top distribution resulting from the saturation of a two-stream instability generated by the two interacting electron beams from the two nearest reconnection points. Finally, the analysis of agyrotropy shows the presence of a distinct double structure laying all over the lower side facing the higher magnetic field region. This structure becomes quadrupolar in the proximity of the regions of the third type. The distinguishing features found for the three types of regions investigated provide clear indicators to the recently launched Magnetospheric Multiscale NASA mission for investigating magnetopause reconnection involving multiple islands.« less

Magnitude 8.1 Earthquake off the Solomon Islands

NASA Technical Reports Server (NTRS)

2007-01-01

On April 1, 2007, a magnitude 8.1 earthquake rattled the Solomon Islands, 2,145 kilometers (1,330 miles) northeast of Brisbane, Australia. Centered less than ten kilometers beneath the Earth's surface, the earthquake displaced enough water in the ocean above to trigger a small tsunami. Though officials were still assessing damage to remote island communities on April 3, Reuters reported that the earthquake and the tsunami killed an estimated 22 people and left as many as 5,409 homeless. The most serious damage occurred on the island of Gizo, northwest of the earthquake epicenter, where the tsunami damaged the hospital, schools, and hundreds of houses, said Reuters. This image, captured by the Landsat-7 satellite, shows the location of the earthquake epicenter in relation to the nearest islands in the Solomon Island group. Gizo is beyond the left edge of the image, but its triangular fringing coral reefs are shown in the upper left corner. Though dense rain forest hides volcanic features from view, the very shape of the islands testifies to the geologic activity of the region. The circular Kolombangara Island is the tip of a dormant volcano, and other circular volcanic peaks are visible in the image. The image also shows that the Solomon Islands run on a northwest-southeast axis parallel to the edge of the Pacific plate, the section of the Earth's crust that carries the Pacific Ocean and its islands. The earthquake occurred along the plate boundary, where the Australia/Woodlark/Solomon Sea plates slide beneath the denser Pacific plate. Friction between the sinking (subducting) plates and the overriding Pacific plate led to the large earthquake on April 1, said the United States Geological Survey (USGS) summary of the earthquake. Large earthquakes are common in the region, though the section of the plate that produced the April 1 earthquake had not caused any quakes of magnitude 7 or larger since the early 20th century, said the USGS.

Moorean tree snail survival revisited: a multi-island genealogical perspective.

PubMed

Lee, Taehwan; Burch, John B; Coote, Trevor; Pearce-Kelly, Paul; Hickman, Carole; Meyer, Jean-Yves; O Foighil, Diarmaid

2009-08-18

The mass extirpation of the island of Moorea's endemic partulid tree snail fauna, following the deliberate introduction of the alien predator Euglandina rosea, represents one of the highest profile conservation crises of the past thirty years. All of the island's partulids were thought to be extirpated by 1987, with five species persisting in zoos, but intensive field surveys have recently detected a number of surviving wild populations. We report here a mitochondrial (mt) phylogenetic estimate of Moorean partulid wild and captive lineage survival calibrated with a reference museum collection that pre-dates the predator's introduction and that also includes a parallel dataset from the neighboring island of Tahiti. Although severe winnowing of Moorea's mt lineage diversity has occurred, seven of eight (six Partula; two Samoana) partulid tip clades remain extant. The extinct mt clade occurred predominantly in the P. suturalis species complex and it represented a major component of Moorea's endemic partulid treespace. Extant Moorean mt clades exhibited a complex spectrum of persistence on Moorea, in captivity, and (in the form of five phylogenetically distinct sister lineages) on Tahiti. Most notably, three Partula taxa, bearing two multi-island mt lineages, have survived decades of E. rosea predation on Moorea (P. taeniata) and in the valleys of Tahiti (P. hyalina and P. clara). Their differential persistence was correlated with intrinsic attributes, such as taxonomy and mt lineages, rather than with their respective within-island distribution patterns. Conservation efforts directed toward Moorean and Tahitian partulids have typically operated within a single island frame of reference, but our discovery of robust genealogical ties among survivors on both islands implies that a multi-island perspective is required. Understanding what genetic and/or ecological factors have enabled Partula taeniata, P. hyalina and P. clara to differentially survive long-term direct exposure to the predator may provide important clues toward developing a viable long term conservation plan for Society Island partulid tree snails.

Cell physiology at the Mount Desert Island Biological Laboratory: a brief look back and forward

PubMed Central

2011-01-01

The Mount Desert Island Biological Laboratory (MDIBL) has played important roles in the development of modern physiological concepts and tools, particularly in the fields of kidney and epithelial cell physiology. Over the last decade, MDIBL has undergone remarkable growth and evolution. This article will briefly review MDIBL's past and outline its future directions. It is hoped that this overview will renew and stimulate interest in MDIBL and, in particular, will encourage an even wider community of physiologists to participate in its ongoing growth and development. PMID:21068363

Asymptotic-preserving Lagrangian approach for modeling anisotropic transport in magnetized plasmas

NASA Astrophysics Data System (ADS)

Chacon, Luis; Del-Castillo-Negrete, Diego

2011-10-01

Modeling electron transport in magnetized plasmas is extremely challenging due to the extreme anisotropy introduced by the presence of the magnetic field (χ∥ /χ⊥ ~1010 in fusion plasmas). Recently, a novel Lagrangian method has been proposed to solve the local and non-local purely parallel transport equation in general 3D magnetic fields. The approach avoids numerical pollution (in fact, it respects transport barriers -flux surfaces- exactly by construction), is inherently positivity-preserving, and is scalable algorithmically (i.e., work per degree-of-freedom is grid-independent). In this poster, we discuss the extension of the Lagrangian approach to include perpendicular transport and sources. We present an asymptotic-preserving numerical formulation that ensures a consistent numerical discretization temporally and spatially for arbitrary χ∥ /χ⊥ ratios. This is of importance because parallel and perpendicular transport terms in the transport equation may become comparable in regions of the plasma (e.g., at incipient islands), while remaining disparate elsewhere. We will demonstrate the potential of the approach with various challenging configurations, including the case of transport across a magnetic island in cylindrical geometry. D. del-Castillo-Negrete, L. Chacón, PRL, 106, 195004 (2011); DPP11 invited talk by del-Castillo-Negrete.

Tectonic and Climatic Controls on Landscape Development of Puerto Rico

NASA Astrophysics Data System (ADS)

Rogers, R. D.; Salas, M.; Colon, A.

2007-12-01

The northeastern Caribbean island of Puerto Rico is an exhumed Cenozoic island arc situated between the inactive Muertos trench to the south and the highly oblique Puerto Rican Trench to the north that forms the left- lateral strike-slip plate margin with North America. The rectangular island's long axis of 175 km parallels the east trending strike of the trenches with a near constant width of between 50 and 60 km. Puerto Rico receives the NE trade winds and has a tropical monsoonal climate. Puerto Rico has a distinct midline asymmetry with north draining watershed about twice the length and five times as large as south draining watershed. This midline asymmetry is more pronounced along the islands eastern third than the central or western thirds. River outlet spacing, mountain front sinuosity, and comparative hypsometry display similar east to west variability consistent with greater denudation in the eastern parts of the island. The southwestern fifth of the island is underlain by serpentinized ocean crust that forms the large diapiric Monte del Estado uplift. Active diapirism is indicated by highly asymmetric watersheds of the surrounding rivers and tributaries. Stream length gradient index calculated from 1:20,000 scale map data and compared to fault locations show little correlation suggesting that active faults does not significantly control Puerto Rico's landscape. Quantified morphologic data from the eastern two-thirds of Puerto Rico are consistent with a landscape developed in response to the precipitation derived from NE trade winds while serpentinite diapirism dominates the western third of the island. Individual active faults of Puerto Rico do not control the landscape development.

Paleozoic and Lower Mesozoic magmas from the eastern Klamath Mountains (North California) and the geodynamic evolution of northwestern America

NASA Astrophysics Data System (ADS)

Lapierre, H.; Brouxel, M.; Albarede, F.; Coulin, C.; Lecuyer, C.; Martin, P.; Mascle, G.; Rouer, O.

1987-09-01

The Paleozoic to Early Mesozoic geology of the eastern Klamath Mountains (N California) is characterized by three major magmatic events of Ordovician, Late Ordovician to Early Devonian, and Permo-Triassic ages. The Ordovician event is represented by a calc-alkalic island-arc sequence (Lovers Leap Butte sequence) developed in the vicinity of a continental margin. The Late Ordovician to Early Devonian event consists of the 430-480 Ma old Trinity ophiolite formed during the early development of a marginal basin, and a series of low-K tholeiitic volcanic suites (Lovers Leap Basalt—Keratophyre unit, Copley and Balaklala Formations) belonging to intraoceanic island-arcs. Finally, the Permo-Triassic event gave rise to three successives phases of volcanic activity (Nosoni, Dekkas and Bully Hill) represented by the highly differentiated basalt-to-rhyolite low-K tholeiitic series of mature island-arcs. The Permo-Triassic sediments are indicative of shallow to moderate depth in an open, warm sea. The geodynamic evolution of the eastern Klamath Mountains during Paleozoic to Early Mesozoic times is therefore constrained by the geological, petrological and geochemical features of its island-arcs and related marginal basin. A consistent plate-tectonic model is proposed for the area, consisting of six main stages: (1) development during Ordovician times of a calc-alkalic island-arc in the vicinity of a continental margin; (2) extrusion during Late Ordovician to Silurian times of a primitive basalt-andesite intraoceanic island-arc suite, which terminated with boninites, the latter suggest rifting in the fore-arc, followed by the breakup of the arc; (3) opening and development of the Trinity back-arc basin around 430-480 Ma ago; (4) eruption of the Balaklala Rhyolite either in the arc or in the fore-arc, ending in Early Devonian time with intrusion of the 400 Ma Mule Mountain stock; (5) break in volcanic activity from the Early Devonian to the Early Permian; and (6) development of a mature island-arc from the Early Permian to the Late Triassic. The eastern Klamath Mountains island-arc formations and ophiolitic suite are part of the "Cordilleran suspect terranes", considered to be Gondwana margin fragments, that have undergone large northward translations before final collision with the North American craton during Late Mesozoic or Cenozoic times. These eastern Klamath Mountains island-arcs could be associated with the paleo-Pacific oceanic plate that led to accretion of these allochthonous terranes to the American margin.

Parallel Evolution of Copy-Number Variation across Continents in Drosophila melanogaster.

PubMed

Schrider, Daniel R; Hahn, Matthew W; Begun, David J

2016-05-01

Genetic differentiation across populations that is maintained in the presence of gene flow is a hallmark of spatially varying selection. In Drosophila melanogaster, the latitudinal clines across the eastern coasts of Australia and North America appear to be examples of this type of selection, with recent studies showing that a substantial portion of the D. melanogaster genome exhibits allele frequency differentiation with respect to latitude on both continents. As of yet there has been no genome-wide examination of differentiated copy-number variants (CNVs) in these geographic regions, despite their potential importance for phenotypic variation in Drosophila and other taxa. Here, we present an analysis of geographic variation in CNVs in D. melanogaster. We also present the first genomic analysis of geographic variation for copy-number variation in the sister species, D. simulans, in order to investigate patterns of parallel evolution in these close relatives. In D. melanogaster we find hundreds of CNVs, many of which show parallel patterns of geographic variation on both continents, lending support to the idea that they are influenced by spatially varying selection. These findings support the idea that polymorphic CNVs contribute to local adaptation in D. melanogaster In contrast, we find very few CNVs in D. simulans that are geographically differentiated in parallel on both continents, consistent with earlier work suggesting that clinal patterns are weaker in this species. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Parallel dynamics between non-Hermitian and Hermitian systems

NASA Astrophysics Data System (ADS)

Wang, P.; Lin, S.; Jin, L.; Song, Z.

2018-06-01

We reveals a connection between non-Hermitian and Hermitian systems by studying the connection between a family of non-Hermitian and Hermitian Hamiltonians based on exact solutions. In general, for a dynamic process in a non-Hermitian system H , there always exists a parallel dynamic process governed by the corresponding Hermitian conjugate system H†. We show that a linear superposition of the two parallel dynamics is exactly equivalent to the time evolution of a state under a Hermitian Hamiltonian H , and we present the relations between {H ,H ,H†} .

MEvoLib v1.0: the first molecular evolution library for Python.

PubMed

Álvarez-Jarreta, Jorge; Ruiz-Pesini, Eduardo

2016-10-28

Molecular evolution studies involve many different hard computational problems solved, in most cases, with heuristic algorithms that provide a nearly optimal solution. Hence, diverse software tools exist for the different stages involved in a molecular evolution workflow. We present MEvoLib, the first molecular evolution library for Python, providing a framework to work with different tools and methods involved in the common tasks of molecular evolution workflows. In contrast with already existing bioinformatics libraries, MEvoLib is focused on the stages involved in molecular evolution studies, enclosing the set of tools with a common purpose in a single high-level interface with fast access to their frequent parameterizations. The gene clustering from partial or complete sequences has been improved with a new method that integrates accessible external information (e.g. GenBank's features data). Moreover, MEvoLib adjusts the fetching process from NCBI databases to optimize the download bandwidth usage. In addition, it has been implemented using parallelization techniques to cope with even large-case scenarios. MEvoLib is the first library for Python designed to facilitate molecular evolution researches both for expert and novel users. Its unique interface for each common task comprises several tools with their most used parameterizations. It has also included a method to take advantage of biological knowledge to improve the gene partition of sequence datasets. Additionally, its implementation incorporates parallelization techniques to enhance computational costs when handling very large input datasets.

Hawaii and Beyond: Volcanic Islands as Model Systems for Biogeochemical and Human Ecodynamic Research

NASA Astrophysics Data System (ADS)

Chadwick, O.

2012-12-01

The Hawaiian Islands provide an excellent natural lab for understanding geochemical and ecosystem processes. The most important features are: a) increasing volcano age with distance from the hotspot, b) asymmetric rainfall distribution imposed by the northeasterly trade winds and orographic processes, creating wet windward and dry leeward landscapes, c) an impoverished vegetation assemblage allowing the same species to grow in strongly varying climate and soil conditions, d) the ability to hold topography relatively constant over long time scales by sampling on volcanic shield remnants that are preserved even on the oldest high island, Kauai, and e) a long-term topographic evolution that carves the gently sloping shield surfaces into steep-sided, amphitheater headed, relatively flat floored valleys. Although deeply incised valleys are well represented in Kauai, the later stages of volcanic island evolution are not well expressed in the exposed Hawaiian Islands. Therefore, I also consider examples from the Society and Gambier Islands in French Polynesia to demonstrate the biogeochemical and human ecodynamic impacts of valley expansion and subsidence leading to drowning of all but the highest elevation interfluves. In Hawaii, I and many colleagues have characterized the details of biogeochemical processes such as: a) variations in oxygen isotopes in soil water and soil minerals, b) changing nutrient sources using Sr, Ca, and Mg isotopes, c) mineral - carbon sorption and its implications for carbon storage in soils and for mineral ripening, and d) the development of leaching and redox driven pedogenic thresholds. Here, I address how these biogeochemical features influence human land-use decisions in prehistoric Hawaii and elsewhere in the Pacific. Polynesian radiation into the eastern Pacific occurred rapidly after 1300 y bp. Although they carried with them a kitchen garden each new island presented a different environmental challenge. They were sensitive to topographic and weathering conditions and adjusted their agricultural efforts accordingly. On young minimally eroded islands they favored dryland agriculture in the uplands - there being nowhere to establish extensive irrigation systems - whereas on older islands they favored irrigated lands in the extensive eroded valleys - the soil nutrient status being too depleted in the uplands. Thus Hawaii has most dryland agriculture and Kauai has most irrigated agriculture. Islands such as Easter Island created a problem because the upland soils were nutrient depleted and there were no valleys. On Moorea, valleys provided substantial areas for irrigation. However much of the uplands had infertile lateritic soils, which in places are covered by landslide deposits that contained very rocky and nutrient-rich soils. Archeological surveys demonstrate that religious and house features were sited on the lateritic soils whereas agriculture was practiced on the landslide deposits. The Gambier Islands are composed of steep highly eroded slopes and small valleys. The valleys were the only place where agriculture could be developed and it is clear that they were the locus of considerable alluvial/colluvial deposition during prehistory and even more so during historic times.

The Limits to Parapatric Speciation: Dobzhansky–Muller Incompatibilities in a Continent–Island Model

PubMed Central

Bank, Claudia; Bürger, Reinhard; Hermisson, Joachim

2012-01-01

How much gene flow is needed to inhibit speciation by the accumulation of Dobzhansky–Muller incompatibilities (DMIs) in a structured population? Here, we derive these limits in a classical migration–selection model with two haploid or diploid loci and unidirectional gene flow from a continent to an island. We discuss the dependence of the maximum gene-flow rate on ecological factors (exogeneous selection), genetic factors (epistasis, recombination), and the evolutionary history. Extensive analytical and numerical results show the following: (1) The maximum rate of gene flow is limited by exogeneous selection. In particular, maintenance of neutral DMIs is impossible with gene flow. (2) There are two distinct mechanisms that drive DMI evolution in parapatry, selection against immigrants in a heterogeneous environment and selection against hybrids due to the incompatibility. (3) Depending on the mechanism, opposite predictions result concerning the genetic architecture that maximizes the rate of gene flow a DMI can sustain. Selection against immigrants favors evolution of tightly linked DMIs of arbitrary strength, whereas selection against hybrids promotes the evolution of strong unlinked DMIs. In diploids, the fitness of the double heterozygotes is the decisive factor to predict the pattern of DMI stability. PMID:22542972

Immunological investments reflect parasite abundance in island populations of Darwin's finches.

PubMed

Lindström, Karin M; Foufopoulos, Johannes; Pärn, Henrik; Wikelski, Martin

2004-07-22

The evolution of parasite resistance can be influenced by the abundance of parasites in the environment. However, it is yet unresolved whether vertebrates change their investment in immune function in response to variation in parasite abundance. Here, we compare parasite abundance in four populations of small ground finches (Geospiza fuliginosa) in the Galapagos archipelago. We predicted that populations exposed to high parasite loads should invest more in immune defence, or alternatively use a different immunological defence strategy. We found that parasite prevalence and/or infection intensity increased with island size. As predicted, birds on large islands had increased concentrations of natural antibodies and mounted a strong specific antibody response faster than birds on smaller islands. By contrast, the magnitude of cell-mediated immune responses decreased with increasing parasite pressure, i.e. on larger islands. The data support the hypothesis that investments into the immune defence are influenced by parasite-mediated selection. Our results are consistent with the hypothesis that different immunological defence strategies are optimal in parasite-rich and parasite-poor environments. Copyright 2004 The Royal Society

Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana

USGS Publications Warehouse

Flocks, James G.; Terrano, Joseph F.

2016-08-01

Characterizing bathymetric change in coastal environments is an important component in understanding shoreline evolution, especially along barrier island platforms. Bathymetric change is a function of the regional sediment budget, long-term wave and current patterns, and episodic impact from high-energy events such as storms. Human modifications may also cause changes in seafloor elevation. This study, conducted by the U.S. Geological Survey in collaboration with the U.S. Fish and Wildlife Service, evaluates bathymetric and volumetric change and sediment characteristics around Breton Island and Gosier Shoals located offshore of the Mississippi River Delta in Louisiana. This area has been affected by significant storm events such as Hurricane Katrina in 2005. Sedimentation patterns at Breton Island and offshore have also been modified by the excavation of a shipping channel north of the island. Four time periods are considered that encompass these episodes and include long-term change and short-term storm recovery: 1869–2014, 1869–1920, 1920–2014, and 2007–2014. Finally, sediment characteristics are reported in the context of seafloor elevation.

Bluff evolution along coastal drumlins: Boston Harbor Islands, Massachusetts

USGS Publications Warehouse

Himmelstoss, E.A.; FitzGerald, D.M.; Rosen, P.S.; Allen, J.R.

2006-01-01

A series of partially drowned drumlins forms the backbone of the inner islands within Boston Harbor. The shoreline of these rounded glacial deposits is composed of actively retreating bluffs formed by continual wave attack. Comparisons of bluffs reveal variability in their height and lateral extent, as well as in the dominant mechanism causing their retreat. Two processes are responsible for bluff erosion and yield distinct bluff morphologies: (1) wave attack undercuts the bluff and causes episodic slumping, yielding planar bluff slopes, and (2) subaerial processes such as rainfall create irregular slopes characterized by rills and gullies. We propose a model of drumlin bluff evolution that is based on processes of erosion and physical characteristics such as bluff height, slope morphology, and the orientation of the bluff with respect to the long axis of the drumlin and its topographic crest. The four phases of drumlin bluff evolution consist of (1) initial formation of bluff, with retreat dominated by wave notching and slumping processes; (2) rill and gully development as bluff heights exceed 10 m and slumped sediment at bluff base inhibits wave attack; (3) return of wave notching and slumping as bluff heights decrease; and (4) final development of boulder retreat lag as last remnants of drumlin are eroded by wave action. These phases capture the important physical processes of drumlin evolution in Boston Harbor and could apply to other eroding coastal drumlin deposits.

Constraints in cancer evolution.

PubMed

Venkatesan, Subramanian; Birkbak, Nicolai J; Swanton, Charles

2017-02-08

Next-generation deep genome sequencing has only recently allowed us to quantitatively dissect the extent of heterogeneity within a tumour, resolving patterns of cancer evolution. Intratumour heterogeneity and natural selection contribute to resistance to anticancer therapies in the advanced setting. Recent evidence has also revealed that cancer evolution might be constrained. In this review, we discuss the origins of intratumour heterogeneity and subsequently focus on constraints imposed upon cancer evolution. The presence of (1) parallel evolution, (2) convergent evolution and (3) the biological impact of acquiring mutations in specific orders suggest that cancer evolution may be exploitable. These constraints on cancer evolution may help us identify cancer evolutionary rule books, which could eventually inform both diagnostic and therapeutic approaches to improve survival outcomes. © 2017 The Author(s); published by Portland Press Limited on behalf of the Biochemical Society.

Methodes iteratives paralleles: Applications en neutronique et en mecanique des fluides

NASA Astrophysics Data System (ADS)

Qaddouri, Abdessamad

Dans cette these, le calcul parallele est applique successivement a la neutronique et a la mecanique des fluides. Dans chacune de ces deux applications, des methodes iteratives sont utilisees pour resoudre le systeme d'equations algebriques resultant de la discretisation des equations du probleme physique. Dans le probleme de neutronique, le calcul des matrices des probabilites de collision (PC) ainsi qu'un schema iteratif multigroupe utilisant une methode inverse de puissance sont parallelises. Dans le probleme de mecanique des fluides, un code d'elements finis utilisant un algorithme iteratif du type GMRES preconditionne est parallelise. Cette these est presentee sous forme de six articles suivis d'une conclusion. Les cinq premiers articles traitent des applications en neutronique, articles qui representent l'evolution de notre travail dans ce domaine. Cette evolution passe par un calcul parallele des matrices des PC et un algorithme multigroupe parallele teste sur un probleme unidimensionnel (article 1), puis par deux algorithmes paralleles l'un mutiregion l'autre multigroupe, testes sur des problemes bidimensionnels (articles 2--3). Ces deux premieres etapes sont suivies par l'application de deux techniques d'acceleration, le rebalancement neutronique et la minimisation du residu aux deux algorithmes paralleles (article 4). Finalement, on a mis en oeuvre l'algorithme multigroupe et le calcul parallele des matrices des PC sur un code de production DRAGON ou les tests sont plus realistes et peuvent etre tridimensionnels (article 5). Le sixieme article (article 6), consacre a l'application a la mecanique des fluides, traite la parallelisation d'un code d'elements finis FES ou le partitionneur de graphe METIS et la librairie PSPARSLIB sont utilises.

Scaling Optimization of the SIESTA MHD Code

NASA Astrophysics Data System (ADS)

Seal, Sudip; Hirshman, Steven; Perumalla, Kalyan

2013-10-01

SIESTA is a parallel three-dimensional plasma equilibrium code capable of resolving magnetic islands at high spatial resolutions for toroidal plasmas. Originally designed to exploit small-scale parallelism, SIESTA has now been scaled to execute efficiently over several thousands of processors P. This scaling improvement was accomplished with minimal intrusion to the execution flow of the original version. First, the efficiency of the iterative solutions was improved by integrating the parallel tridiagonal block solver code BCYCLIC. Krylov-space generation in GMRES was then accelerated using a customized parallel matrix-vector multiplication algorithm. Novel parallel Hessian generation algorithms were integrated and memory access latencies were dramatically reduced through loop nest optimizations and data layout rearrangement. These optimizations sped up equilibria calculations by factors of 30-50. It is possible to compute solutions with granularity N/P near unity on extremely fine radial meshes (N > 1024 points). Grid separation in SIESTA, which manifests itself primarily in the resonant components of the pressure far from rational surfaces, is strongly suppressed by finer meshes. Large problem sizes of up to 300 K simultaneous non-linear coupled equations have been solved on the NERSC supercomputers. Work supported by U.S. DOE under Contract DE-AC05-00OR22725 with UT-Battelle, LLC.

Earth Observations by the Expedition 19 crew

NASA Image and Video Library

2009-05-07

ISS019-E-014918 (7 May 2009) --- Saint Helena Island is featured in this image photographed by an Expedition 19 crewmember on the International Space Station. This isolated island, located in the South Atlantic Ocean approximately 1860 kilometers to the west of the African coastline, is perhaps best known as the final resting place of Napoleon Bonaparte I of France. Bonaparte was exiled to the island following his defeat at the Battle of Waterloo in 1815; he died on the island six years later in 1821. Today, the island is a British Overseas Territory, with access provided thirty times a year by a single ship, the RMS St. Helena. The rugged topography evident in this photograph is the result of erosion of the volcanic rocks that make up the island into sharp peaks and deep ravines. A climatic gradient related to elevation is also evident ? the higher, wetter central portion of the island is covered with green vegetation, whereas the lower coastal areas are drier and hotter with little vegetation cover. Human presence on the island has also caused dramatic changes to the original flora and fauna of the island. Only approximately 10 percent of the forest cover observed by the first explorers now remains in a semi-natural state, and that is concentrated in the interior highlands. Saint Helena Island was also visited by Charles Darwin during his scientific voyages in the 19th century. He visited the island in 1836 aboard HMS Beagle, recording observations of the flora, fauna, and geology that would inform his theory of evolution. This image was acquired by crew members onboard the International Space Station as part of an ongoing project (the HMS Beagle Project) to document current biodiversity in areas visited by Charles Darwin.

Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization.

PubMed

Meier, Joana I; Sousa, Vitor C; Marques, David A; Selz, Oliver M; Wagner, Catherine E; Excoffier, Laurent; Seehausen, Ole

2017-01-01

Modes and mechanisms of speciation are best studied in young species pairs. In older taxa, it is increasingly difficult to distinguish what happened during speciation from what happened after speciation. Lake Victoria cichlids in the genus Pundamilia encompass a complex of young species and polymorphic populations. One Pundamilia species pair, P. pundamilia and P. nyererei, is particularly well suited to study speciation because sympatric population pairs occur with different levels of phenotypic differentiation and reproductive isolation at different rocky islands within the lake. Genetic distances between allopatric island populations of the same nominal species often exceed those between the sympatric species. It thus remained unresolved whether speciation into P. nyererei and P. pundamilia occurred once, followed by geographical range expansion and interspecific gene flow in local sympatry, or if the species pair arose repeatedly by parallel speciation. Here, we use genomic data and demographic modelling to test these alternative evolutionary scenarios. We demonstrate that gene flow plays a strong role in shaping the observed patterns of genetic similarity, including both gene flow between sympatric species and gene flow between allopatric populations, as well as recent and early gene flow. The best supported model for the origin of P. pundamilia and P. nyererei population pairs at two different islands is one where speciation happened twice, whereby the second speciation event follows shortly after introgression from an allopatric P. nyererei population that arose earlier. Our findings support the hypothesis that very similar species may arise repeatedly, potentially facilitated by introgressed genetic variation. © 2016 John Wiley & Sons Ltd.

Sea-floor geology in northwestern Block Island Sound, Rhode Island

USGS Publications Warehouse

McMullen, Katherine Y.; Poppe, Lawrence J.; Ackerman, Seth D.; Blackwood, Dann S.; Woods, D.A.

2014-01-01

Multibeam-echosounder and sidescan-sonar data, collected by the National Oceanic and Atmospheric Administration in a 69-square-kilometer area of northwestern Block Island Sound, are used with sediment samples, and still and video photography of the sea floor, collected by the U.S. Geological Survey at 43 stations within this area, to interpret the sea-floor features and sedimentary environments. Features on the sea floor include boulders, sand waves, scour depressions, modern marine sediments, and trawl marks. Boulders, which are often several meters wide, are found in patches in the shallower depths and tend to be overgrown with sessile flora and fauna. They are lag deposits of winnowed glacial drift, and reflect high-energy environments characterized by processes associated with erosion and nondeposition. Sand waves and megaripples tend to have crests that either trend parallel to shore with 20- to 50-meter (m) wavelengths or trend perpendicular to shore with several-hundred-meter wavelengths. The sand waves reflect sediment transport directions perpendicular to shore by waves, and parallel to shore by tidal or wind-driven currents, respectively. Scour depressions, which are about 0.5 m lower than the surrounding sea floor, have floors of gravel and coarser sand than bounding modern marine sediments. These scour depressions, which are conspicuous in the sidescan-sonar data because of their more highly reflective coarser sediment floors, are likely formed by storm-generated, seaward-flowing currents and maintained by the turbulence in bottom currents caused by their coarse sediments. Areas of the sea floor with modern marine sediments tend to be relatively flat to current-rippled and sandy.

Can reef islands keep up with sea level? Exploring the interplay between sea-level rise, sediment supply, and overwash processes

NASA Astrophysics Data System (ADS)

Lorenzo-Trueba, J.

2016-02-01

Coral reef islands are accumulations of carbonate sediment deposited subaerially atop coral reef platforms. We hypothesize that the long-term evolution of reef islands is primarily controlled by the interplay between sea-level rise, sediment supply, and sediment overwash. Reef islands are supplied with sediment from offshore, in the form of reworked coral skeletons that originate at the reef edge and are carried onto the reef platform by waves, as well as in situ production on the reef flat itself. However, the primary mechanism that allows reef islands to keep pace with sea level is storm overwash, which enables the vertical transport of sediment from the periphery to the top of the island. Given the current lack of understanding on how production and overwash processes interact, we have constructed a morphodynamic model to elucidate and quantify how reef islands may respond to sea-level rise and changes in sediment production. Model results demonstrate that even if reef islands can remain subaerial over the coming century, this will require significant deposition of sediment atop the island and, in many cases, the island is expected to roll considerably over itself; both of these morphologic changes will negatively affect homes and infrastructure atop these islands. The model also suggests that as reef islands approach the lagoon edge of the reef platform, shoreline erosion and island drowning can be enhanced as sediment overwashes into the lagoon. Interestingly, this situation can only be avoided if either a high offshore sediment supply bulwarks the island in place or the system undergoes similar rates of overwash sedimentation from both the ocean and the lagoon sides. The model also allows us to explore the potential for increased overwash with increased storminess, increases in sediment supply due to bleaching or disturbance, or reduction of sediment supply as a result of reduced calcification rates due to ocean acidification.

The effect of giant flank collapses on magma pathways and location of volcanic vents

NASA Astrophysics Data System (ADS)

Maccaferri, Francesco; Richter, Nicole; Walter, Thomas

2017-04-01

Flank collapses have been identified at tall volcanoes and ocean islands worldwide. They are recurrent processes, significantly contributing to the morphological and structural evolution of volcanic edifices, and they often occur in interaction with magmatic activity. Moreover, it has been observed that the intrusion pathways and eruption's sites often differ before and after flank collapses. While it is understood that dyke intrusions might destabilise a volcano flank, and a moving flank might create the space needed for further intrusions, the effect of collapses on the magma pathways has been rarely addressed. Here we use a boundary element model for dyke propagation to study the effect of the stress redistribution due to a flank collapse on the location of eruptive vents. We use our model to simulate the path of magmatic intrusion after the collapse of the eastern flank of Fogo Volcano, Cabe Verde. We find that the competition between loading stress due to the volcanic edifice and unloading due to the collapse of a flank favours magmatic activity to cluster within the collapse scar, displaced with respect to the pre-collapse volcanic centre. Our results are compared with geomorphological observations at Fogo Island and are discussed in the general context of the long-term evolution intraplate volcanic ocean islands worldwide.

Towards physical principles of biological evolution

NASA Astrophysics Data System (ADS)

Katsnelson, Mikhail I.; Wolf, Yuri I.; Koonin, Eugene V.

2018-03-01

Biological systems reach organizational complexity that far exceeds the complexity of any known inanimate objects. Biological entities undoubtedly obey the laws of quantum physics and statistical mechanics. However, is modern physics sufficient to adequately describe, model and explain the evolution of biological complexity? Detailed parallels have been drawn between statistical thermodynamics and the population-genetic theory of biological evolution. Based on these parallels, we outline new perspectives on biological innovation and major transitions in evolution, and introduce a biological equivalent of thermodynamic potential that reflects the innovation propensity of an evolving population. Deep analogies have been suggested to also exist between the properties of biological entities and processes, and those of frustrated states in physics, such as glasses. Such systems are characterized by frustration whereby local state with minimal free energy conflict with the global minimum, resulting in ‘emergent phenomena’. We extend such analogies by examining frustration-type phenomena, such as conflicts between different levels of selection, in biological evolution. These frustration effects appear to drive the evolution of biological complexity. We further address evolution in multidimensional fitness landscapes from the point of view of percolation theory and suggest that percolation at level above the critical threshold dictates the tree-like evolution of complex organisms. Taken together, these multiple connections between fundamental processes in physics and biology imply that construction of a meaningful physical theory of biological evolution might not be a futile effort. However, it is unrealistic to expect that such a theory can be created in one scoop; if it ever comes to being, this can only happen through integration of multiple physical models of evolutionary processes. Furthermore, the existing framework of theoretical physics is unlikely to suffice for adequate modeling of the biological level of complexity, and new developments within physics itself are likely to be required.

Coastal bathymetry data collected in May 2015 from Fire Island, New York—Wilderness breach and shoreface

USGS Publications Warehouse

Nelson, Timothy R.; Miselis, Jennifer L.; Hapke, Cheryl J.; Brenner, Owen T.; Henderson, Rachel E.; Reynolds, Billy J.; Wilson, Kathleen E.

2017-05-12

Scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center in St. Petersburg, Florida, conducted a bathymetric survey of Fire Island from May 6-20, 2015. The USGS is involved in a post-Hurricane Sandy effort to map and monitor the morphologic evolution of the wilderness breach as a part of the Hurricane Sandy Supplemental Project GS2-2B. During this study, bathymetry data were collected with single-beam echo sounders and Global Positioning Systems, which were mounted to personal watercraft, along the Fire Island shoreface and within the wilderness breach. Additional bathymetry and elevation data were collected using backpack Global Positioning Systems on flood shoals and in shallow channels within the wilderness breach.

Parallel programming with Easy Java Simulations

NASA Astrophysics Data System (ADS)

Esquembre, F.; Christian, W.; Belloni, M.

2018-01-01

Nearly all of today's processors are multicore, and ideally programming and algorithm development utilizing the entire processor should be introduced early in the computational physics curriculum. Parallel programming is often not introduced because it requires a new programming environment and uses constructs that are unfamiliar to many teachers. We describe how we decrease the barrier to parallel programming by using a java-based programming environment to treat problems in the usual undergraduate curriculum. We use the easy java simulations programming and authoring tool to create the program's graphical user interface together with objects based on those developed by Kaminsky [Building Parallel Programs (Course Technology, Boston, 2010)] to handle common parallel programming tasks. Shared-memory parallel implementations of physics problems, such as time evolution of the Schrödinger equation, are available as source code and as ready-to-run programs from the AAPT-ComPADRE digital library.

Self-Assembly of Organic Ferroelectrics by Evaporative Dewetting: A Case of β-Glycine.

PubMed

Seyedhosseini, Ensieh; Romanyuk, Konstantin; Vasileva, Daria; Vasilev, Semen; Nuraeva, Alla; Zelenovskiy, Pavel; Ivanov, Maxim; Morozovska, Anna N; Shur, Vladimir Ya; Lu, Haidong; Gruverman, Alexei; Kholkin, Andrei L

2017-06-14

Self-assembly of ferroelectric materials attracts significant interest because it offers a promising fabrication route to novel structures useful for microelectronic devices such as nonvolatile memories, integrated sensors/actuators, or energy harvesters. In this work, we demonstrate a novel approach for self-assembly of organic ferroelectrics (as exemplified by ferroelectric β-glycine) using evaporative dewetting, which allows forming quasi-regular arrays of nano- and microislands with preferred orientation of polarization axes. Surprisingly, self-assembled islands are crystallographically oriented in a radial direction from the center of organic "grains" formed during dewetting process. The kinetics of dewetting process follows the t -1/2 law, which is responsible for the observed polygon shape of the grain boundaries and island coverage as a function of radial position. The polarization in ferroelectric islands of β-glycine is parallel to the substrate and switchable under a relatively small dc voltage applied by the conducting tip of piezoresponse force microscope. Significant size effect on polarization is observed and explained within the Landau-Ginzburg-Devonshire phenomenological formalism.

Geology of Saipan, Mariana Islands; Part 4, Submarine topography and shoal-water ecology

USGS Publications Warehouse

Cloud, Preston E.

1959-01-01

The topography of the sea floor within 10 miles of Saipan broadly resembles that of the land. Eastward, toward the Mariana trench, slopes are about 6°, without prominent benches or scarps. This is inferred to indicate easterly continuation of generally pyroclastic bedrock. The westward slope averages 2° to 3° and consists mainly of nearly flat benches and westfacing scarps. This is taken to imply westward continuation of a limestone bench-and-fault-scarp topography. Projection of known faults to sea and through Tinian, on the basis of topographic trends, suggests a pattern of west-dipping normal faults that parallel the strike of the Mariana ridge and affect the shape and position of islands at the crest of the ridge.

Transformation and diversification in early mammal evolution.

PubMed

Luo, Zhe-Xi

2007-12-13

Evolution of the earliest mammals shows successive episodes of diversification. Lineage-splitting in Mesozoic mammals is coupled with many independent evolutionary experiments and ecological specializations. Classic scenarios of mammalian morphological evolution tend to posit an orderly acquisition of key evolutionary innovations leading to adaptive diversification, but newly discovered fossils show that evolution of such key characters as the middle ear and the tribosphenic teeth is far more labile among Mesozoic mammals. Successive diversifications of Mesozoic mammal groups multiplied the opportunities for many dead-end lineages to iteratively evolve developmental homoplasies and convergent ecological specializations, parallel to those in modern mammal groups.

Genetic architecture underlying convergent evolution of egg-laying behavior in a seed-feeding beetle.

PubMed

Fox, Charles W; Wagner, James D; Cline, Sara; Thomas, Frances Ann; Messina, Frank J

2009-05-01

Independent populations subjected to similar environments often exhibit convergent evolution. An unresolved question is the frequency with which such convergence reflects parallel genetic mechanisms. We examined the convergent evolution of egg-laying behavior in the seed-feeding beetle Callosobruchus maculatus. Females avoid ovipositing on seeds bearing conspecific eggs, but the degree of host discrimination varies among geographic populations. In a previous experiment, replicate lines switched from a small host to a large one evolved reduced discrimination after 40 generations. We used line crosses to determine the genetic architecture underlying this rapid response. The most parsimonious genetic models included dominance and/or epistasis for all crosses. The genetic architecture underlying reduced discrimination in two lines was not significantly different from the architecture underlying differences between geographic populations, but the architecture underlying the divergence of a third line differed from all others. We conclude that convergence of this complex trait may in some cases involve parallel genetic mechanisms.