Numerical Computations of Hypersonic Boundary-Layer over Surface Irregularities

NASA Technical Reports Server (NTRS)

Chang, Chau-Lyan; Choudhari, Meelan M.; Li, Fei

2010-01-01

Surface irregularities such as protuberances inside a hypersonic boundary layer may lead to premature transition on the vehicle surface. Early transition in turn causes large localized surface heating that could damage the thermal protection system. Experimental measurements as well as numerical computations aimed at building a knowledge base for transition Reynolds numbers with respect to different protuberance sizes and locations have been actively pursued in recent years. This paper computationally investigates the unsteady wake development behind large isolated cylindrical roughness elements and the scaled wind-tunnel model of the trip used in a recent flight measurement during the reentry of space shuttle Discovery. An unstructured mesh, compressible flow solver based on the space-time conservation element, solution element (CESE) method is used to perform time-accurate Navier-Stokes calculations for the flow past a roughness element under several wind-tunnel conditions. For a cylindrical roughness element with a height to the boundary-layer thickness ratio from 0.8 to 2.5, the wake flow is characterized by a mushroom-shaped centerline streak and horse-shoe vortices. While time-accurate solutions converged to a steady-state for a ratio of 0.8, strong flow unsteadiness is present for a ratio of 1.3 and 2.5. Instability waves marked by distinct disturbance frequencies were found in the latter two cases. Both the centerline streak and the horse-shoe vortices become unstable downstream. The oscillatory vortices eventually reach an early breakdown stage for the largest roughness element. Spectral analyses in conjunction with the computed root mean square variations suggest that the source of the unsteadiness and instability waves in the wake region may be traced back to possible absolute instability in the front-side separation region.

Direct numerical simulation of a compressible boundary-layer flow past an isolated three-dimensional hump in a high-speed subsonic regime

NASA Astrophysics Data System (ADS)

De Grazia, D.; Moxey, D.; Sherwin, S. J.; Kravtsova, M. A.; Ruban, A. I.

2018-02-01

In this paper we study the boundary-layer separation produced in a high-speed subsonic boundary layer by a small wall roughness. Specifically, we present a direct numerical simulation (DNS) of a two-dimensional boundary-layer flow over a flat plate encountering a three-dimensional Gaussian-shaped hump. This work was motivated by the lack of DNS data of boundary-layer flows past roughness elements in a similar regime which is typical of civil aviation. The Mach and Reynolds numbers are chosen to be relevant for aeronautical applications when considering small imperfections at the leading edge of wings. We analyze different heights of the hump: The smaller heights result in a weakly nonlinear regime, while the larger result in a fully nonlinear regime with an increasing laminar separation bubble arising downstream of the roughness element and the formation of a pair of streamwise counterrotating vortices which appear to support themselves.

Aeroheating Measurement of Apollo Shaped Capsule with Boundary Layer Trip in the Free-piston Shock Tunnel HIEST

NASA Technical Reports Server (NTRS)

Hideyuki, TANNO; Tomoyuki, KOMURO; Kazuo, SATO; Katsuhiro, ITOH; Lillard, Randolph P.; Olejniczak, Joseph

2013-01-01

An aeroheating measurement test campaign of an Apollo capsule model with laminar and turbulent boundary layer was performed in the free-piston shock tunnel HIEST at JAXA Kakuda Space Center. A 250mm-diameter 6.4%-scaled Apollo CM capsule model made of SUS-304 stainless steel was applied in this study. To measure heat flux distribution, the model was equipped with 88 miniature co-axial Chromel-Constantan thermocouples on the heat shield surface of the model. In order to promote boundary layer transition, a boundary layer trip insert with 13 "pizza-box" isolated roughness elements, which have 1.27mm square, were placed at 17mm below of the model geometric center. Three boundary layer trip inserts with roughness height of k=0.3mm, 0.6mm and 0.8mm were used to identify the appropriate height to induce transition. Heat flux records with or without roughness elements were obtained for model angles of attack 28º under stagnation enthalpy between H(sub 0)=3.5MJ/kg to 21MJ/kg and stagnation pressure between P(sub 0)=14MPa to 60MPa. Under the condition above, Reynolds number based on the model diameter was varied from 0.2 to 1.3 million. With roughness elements, boundary layer became fully turbulent less than H(sub 0)=9MJ/kg condition. However, boundary layer was still laminar over H(sub 0)=13MJ/kg condition even with the highest roughness elements. An additional experiment was also performed to correct unexpected heat flux augmentation observed over H(sub 0)=9MJ/kg condition.

Genetic basis for loss of immuno-reactive O-chain in Salmonella enterica serovar Enteritidis veterinary isolates.

PubMed

Szabo, Istvan; Grafe, Marianne; Kemper, Nicole; Junker, Ernst; Malorny, Burkhard

2017-05-01

Fifty-two rough Salmonella enterica serovar Enteritidis (S. Enteritidis) isolates from broilers and the environment were characterized for their serological and genotypic properties. Under routine diagnostic serotyping methods such isolates lack the immuno-reactivity of the O-chain of the lipopolysaccharide (LPS), and are referred to as non-typeable. Using a modified slide agglutination method, the isolates could be differentiated into three different serological variants. Twenty-six isolates (50%) were defined as semi-rough, nineteen isolates (37%) as deep-rough, four isolates (8%) as rough and three isolates could not be assigned. Genetically, all semi-rough isolates lacked the wzyB gene encoding the O-antigen polymerase. Two isolates carried a frameshift mutation in wzyB. In 15 of 23 cases deep-rough or rough isolates had a single point mutation, a single - or double-nucleotide insert or deletion in the wbaP gene. The mutational changes lead to expression of truncated (premature) protein, resulting in the loss of the immuno-reactive O-chain. Both rough and smooth S. Enteritidis isolates showed identical or highly similar XbaI-PFGE profiles. Our results indicate that the loss of a functional LPS in S. Enteritidis isolates is caused by a variety of different mutation events within the wzyB (semi-rough) or the wbaP (deep-rough) gene and is not a result of a vertical spread of a specific S. Enteritidis subtype. The defect of the LPS may be a common evolutionary mechanism through which host defence can be escaped. Copyright © 2017. Published by Elsevier B.V.

Flow Resistance Interactions on Hillslopes With Heterogeneous Attributes: Effects on Runoff Hydrograph Characteristics

NASA Astrophysics Data System (ADS)

Papanicolaou, Athanasios N.; Abban, Benjamin K. B.; Dermisis, Dimitrios C.; Giannopoulos, Christos P.; Flanagan, Dennis C.; Frankenberger, James R.; Wacha, Kenneth M.

2018-01-01

An improved modeling framework for capturing the effects of space and time-variant resistance to overland flow is developed for intensively managed landscapes. The framework builds on the WEPP model but it removes the limitations of the "equivalent" plane and time-invariant roughness assumption. The enhanced model therefore accounts for spatiotemporal changes in flow resistance along a hillslope due to changes in roughness, in profile curvature, and downslope variability. The model is used to quantify the degree of influence—from individual soil grains to aggregates, "isolated roughness elements," and vegetation—on overland flow characteristics under different storm magnitudes, downslope gradients, and profile curvatures. It was found that the net effects of land use change from vegetation to a bare surface resulted in hydrograph peaks that were up to 133% larger. Changes in hillslope profile curvature instead resulted in peak runoff rate changes that were only up to 16%. The stream power concept is utilized to develop a taxonomy that relates the influence of grains, isolated roughness elements, and vegetation, on overland flow under different storm magnitudes and hillslope gradients. Critical storm magnitudes and hillslope gradients were found beyond which the effects of these landscape attributes on the peak stream power were negligible. The results also highlight weaknesses of the space/time-invariant flow resistance assumption and demonstrate that assumptions on landscape terrain characteristics exert a strong control both on the shape and magnitude of hydrographs, with deviations reaching 65% in the peak runoff when space/time-variant resistance effects are ignored in some cases.

Multigrid methods for flow transition in three-dimensional boundary layers with surface roughness

NASA Technical Reports Server (NTRS)

Liu, Chaoqun; Liu, Zhining; Mccormick, Steve

1993-01-01

The efficient multilevel adaptive method has been successfully applied to perform direct numerical simulations (DNS) of flow transition in 3-D channels and 3-D boundary layers with 2-D and 3-D isolated and distributed roughness in a curvilinear coordinate system. A fourth-order finite difference technique on stretched and staggered grids, a fully-implicit time marching scheme, a semi-coarsening multigrid method associated with line distributive relaxation scheme, and an improved outflow boundary-condition treatment, which needs only a very short buffer domain to damp all order-one wave reflections, are developed. These approaches make the multigrid DNS code very accurate and efficient. This allows us not only to be able to do spatial DNS for the 3-D channel and flat plate at low computational costs, but also to do spatial DNS for transition in the 3-D boundary layer with 3-D single and multiple roughness elements, which would have extremely high computational costs with conventional methods. Numerical results show good agreement with the linear stability theory, the secondary instability theory, and a number of laboratory experiments. The contribution of isolated and distributed roughness to transition is analyzed.

Shear Stress Partitioning in Large Patches of Roughness in the Atmospheric Inertial Sublayer

NASA Technical Reports Server (NTRS)

Gillies, John A.; Nickling, William G.; King, James

2007-01-01

Drag partition measurements were made in the atmospheric inertial sublayer for six roughness configurations made up of solid elements in staggered arrays of different roughness densities. The roughness was in the form of a patch within a large open area and in the shape of an equilateral triangle with 60 m long sides. Measurements were obtained of the total shear stress (tau) acting on the surfaces, the surface shear stress on the ground between the elements (tau(sub S)) and the drag force on the elements for each roughness array. The measurements indicated that tau(sub S) quickly reduced near the leading edge of the roughness compared with tau, and a tau(sub S) minimum occurs at a normalized distance (x/h, where h is element height) of approx. -42 (downwind of the roughness leading edge is negative), then recovers to a relatively stable value. The location of the minimum appears to scale with element height and not roughness density. The force on the elements decreases exponentially with normalized downwind distance and this rate of change scales with the roughness density, with the rate of change increasing as roughness density increases. Average tau(sub S): tau values for the six roughness surfaces scale predictably as a function of roughness density and in accordance with a shear stress partitioning model. The shear stress partitioning model performed very well in predicting the amount of surface shear stress, given knowledge of the stated input parameters for these patches of roughness. As the shear stress partitioning relationship within the roughness appears to come into equilibrium faster for smaller roughness element sizes it would also appear the shear stress partitioning model can be applied with confidence for smaller patches of smaller roughness elements than those used in this experiment.

Investigation of wall-bounded turbulence over sparsely distributed roughness

NASA Astrophysics Data System (ADS)

Placidi, Marco; Ganapathisubramani, Bharath

2011-11-01

The effects of sparsely distributed roughness elements on the structure of a turbulent boundary layer are examined by performing a series of Particle Image Velocimetry (PIV) experiments in a wind tunnel. From the literature, the best way to characterise a rough wall, especially one where the density of roughness elements is sparse, is unclear. In this study, rough surfaces consisting of sparsely and uniformly distributed LEGO® blocks are used. Five different patterns are adopted in order to examine the effects of frontal solidity (λf, frontal area of the roughness elements per unit wall-parallel area), plan solidity (λp, plan area of roughness elements per unit wall-parallel area) and the geometry of the roughness element (square and cylindrical elements), on the turbulence structure. The Karman number, Reτ , has been matched, at the value of approximately 2300, in order to compare across the different cases. In the talk, we will present detailed analysis of mean and rms velocity profiles, Reynolds stresses and quadrant decomposition.

Effect of truncated cone roughness element density on hydrodynamic drag

NASA Astrophysics Data System (ADS)

Womack, Kristofer; Schultz, Michael; Meneveau, Charles

2017-11-01

An experimental study was conducted on rough-wall, turbulent boundary layer flow with roughness elements whose idealized shape model barnacles that cause hydrodynamic drag in many applications. Varying planform densities of truncated cone roughness elements were investigated. Element densities studied ranged from 10% to 79%. Detailed turbulent boundary layer velocity statistics were recorded with a two-component LDV system on a three-axis traverse. Hydrodynamic roughness length (z0) and skin-friction coefficient (Cf) were determined and compared with the estimates from existing roughness element drag prediction models including Macdonald et al. (1998) and other recent models. The roughness elements used in this work model idealized barnacles, so implications of this data set for ship powering are considered. This research was supported by the Office of Naval Research and by the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program.

An Experimental Study of Roughness-Induced Instabilities in a Supersonic Boundary Layer

NASA Technical Reports Server (NTRS)

Kegerise, Michael A.; King, Rudolph A.; Choudhari, Meelan; Li, Fei; Norris, Andrew

2014-01-01

Progress on an experimental study of laminar-to-turbulent transition induced by an isolated roughness element in a supersonic laminar boundary layer is reported in this paper. Here, the primary focus is on the effects of roughness planform shape on the instability and transition characteristics. Four different roughness planform shapes were considered (a diamond, a circle, a right triangle, and a 45 degree fence) and the height and width of each one was held fixed so that a consistent frontal area was presented to the oncoming boundary layer. The nominal roughness Reynolds number was 462 and the ratio of the roughness height to the boundary layer thickness was 0.48. Detailed flow- field surveys in the wake of each geometry were performed via hot-wire anemometry. High- and low-speed streaks were observed in the wake of each roughness geometry, and the modified mean flow associated with these streak structures was found to support a single dominant convective instability mode. For the symmetric planform shapes - the diamond and circular planforms - the instability characteristics (mode shapes, growth rates, and frequencies) were found to be similar. For the asymmetric planform shapes - the right-triangle and 45 degree fence planforms - the mode shapes were asymmetrically distributed about the roughness-wake centerline. The instability growth rates for the asymmetric planforms were lower than those for the symmetric planforms and therefore, transition onset was delayed relative to the symmetric planforms.

Numerical investigation of hypersonic flat-plate boundary layer transition mechanism induced by different roughness shapes

NASA Astrophysics Data System (ADS)

Zhou, Yunlong; Zhao, Yunfei; Xu, Dan; Chai, Zhenxia; Liu, Wei

2016-10-01

The roughness-induced laminar-turbulent boundary layer transition is significant for high-speed aerospace applications. The transition mechanism is closely related to the roughness shape. In this paper, high-order numerical method is used to investigate the effect of roughness shape on the flat-plate laminar-to-turbulent boundary layer transition. Computations are performed in both the supersonic and hypersonic regimes (free-stream Mach number from 3.37 up to 6.63) for the square, cylinder, diamond and hemisphere roughness elements. It is observed that the square and diamond roughness elements are more effective in inducing transition compared with the cylinder and hemisphere ones. The square roughness element has the longest separated region in which strong unsteadiness exists and the absolute instability is formed, thus resulting in the earliest transition. The diamond roughness element has a maximum width of the separated region leading to the widest turbulent wake region far downstream. Furthermore, transition location moves backward as the Mach number increases, which indicates that the compressibility significantly suppresses the roughness-induced boundary layer transition.

A Numerical Study of 2-D Surface Roughness Effects on the Growth of Wave Modes in Hypersonic Boundary Layers

NASA Astrophysics Data System (ADS)

Fong, Kahei Danny

The current understanding and research efforts on surface roughness effects in hypersonic boundary-layer flows focus, almost exclusively, on how roughness elements trip a hypersonic boundary layer to turbulence. However, there were a few reports in the literature suggesting that roughness elements in hypersonic boundary-layer flows could sometimes suppress the transition process and delay the formation of turbulent flow. These reports were not common and had not attracted much attention from the research community. Furthermore, the mechanisms of how the delay and stabilization happened were unknown. A recent study by Duan et al. showed that when 2-D roughness elements were placed downstream of the so-called synchronization point, the unstable second-mode wave in a hypersonic boundary layer was damped. Since the second-mode wave is typically the most dangerous and dominant unstable mode in a hypersonic boundary layer for sharp geometries at a zero angle of attack, this result has pointed to an explanation on how roughness elements delay transition in a hypersonic boundary layer. Such an understanding can potentially have significant practical applications for the development of passive flow control techniques to suppress hypersonic boundary-layer transition, for the purpose of aero-heating reduction. Nevertheless, the previous study was preliminary because only one particular flow condition with one fixed roughness parameter was considered. The study also lacked an examination on the mechanism of the damping effect of the second mode by roughness. Hence, the objective of the current research is to conduct an extensive investigation of the effects of 2-D roughness elements on the growth of instability waves in a hypersonic boundary layer. The goal is to provide a full physical picture of how and when 2-D roughness elements stabilize a hypersonic boundary layer. Rigorous parametric studies using numerical simulation, linear stability theory (LST), and parabolized stability equation (PSE) are performed to ensure the fidelity of the data and to study the relevant flow physics. All results unanimously confirm the conclusion that the relative location of the synchronization point with respect to the roughness element determines the roughness effect on the second mode. Namely, a roughness placed upstream of the synchronization point amplifies the unstable waves while placing a roughness downstream of the synchronization point damps the second-mode waves. The parametric study also shows that a tall roughness element within the local boundary-layer thickness results in a stronger damping effect, while the effect of the roughness width is relatively insignificant compared with the other roughness parameters. On the other hand, the fact that both LST and PSE successfully predict the damping effect only by analyzing the meanflow suggests the mechanism of the damping is by the meanflow alteration due to the existence of roughness elements, rather than new mode generation. In addition to studying the unstable waves, the drag force and heating with and without roughness have been investigated by comparing the numerical simulation data with experimental correlations. It is shown that the increase in drag force generated by the Mach wave around a roughness element in a hypersonic boundary layer is insignificant compared to the reduction of drag force by suppressing turbulent flow. The study also shows that, for a cold wall flow which is the case for practical flight applications, the Stanton number decreases as roughness elements smooth out the temperature gradient in the wall-normal direction. Based on the knowledge of roughness elements damping the second mode gained from the current study, a novel passive transition control method using judiciously placed roughness elements has been developed, and patented, during the course of this research. The main idea of the control method is that, with a given geometry and flow condition, it is possible to find the most unstable second-mode frequency that can lead to transition. And by doing a theoretical analysis such as LST, the synchronization location for the most unstable frequency can be found. Roughness elements are then strategically placed downstream of the synchronization point to damp out this dangerous second-mode wave, thus stabilizing the boundary layer and suppressing the transition process. This method is later experimentally validated in Purdue's Mach 6 quiet wind tunnel. Overall, this research has not only provided details of when and how 2-D roughness stabilizes a hypersonic boundary layer, it also has led to a successful application of numerical simulation data to the development of a new roughness-based transition delay method, which could potentially have significant contributions to the design of future generation hypersonic vehicles.

Using Large-Scale Roughness Elements to Control Sand and Dust Flux at the Keeler Dunes, Keeler, CA

NASA Astrophysics Data System (ADS)

Gillies, John; McCarley-Holder, Grace

2014-05-01

Controlling dust emission from areas that subsequently degrade air quality and threaten human and animal health and reduce the quality of life for people residing in proximity to such sources is necessary, but also challenging. Recent research has indicated that arrays of large roughness elements (height >0.3 m) can be used effectively to modulate sand transport and the associated dust emissions. Prediction of the rate of sand flux reduction as a function of downwind distance upon entering an array of roughness elements, and the equilibrium flux reduction in the interior of the array is possible using the known geometric properties of the roughness elements, their number, and published relationships. Air quality in the town of Keeler, CA (36 deg 29' 17.92" N, 117 deg 52' 24.62" W) is degraded by levels of particulate matter <10 µm aerodynamic diameter (PM10) during periods of elevated wind speeds due to sand transport and dust emissions in the nearby Keeler Dunes. A demonstration project was designed to evaluate the effectiveness of an array of roughness elements composed of solid elements and managed vegetation to meet sand and dust flux reduction criteria. This project has two major goals: 1) to demonstrate that solid roughness elements placed on areas of the Keeler Dunes immediately arrest sand movement to specified levels (target of 85% reduction), and 2) to assess whether native plant species, planted in the sheltered area of the solid roughness elements can effectively thrive and subsequently replace the solid roughness to achieve the desired sand flux reduction control efficiency. This poster describes the results related mostly to objective one, as considerable time has to pass before sufficient data will be obtained to evaluate the success of the planted and managed vegetation to achieve a control level provided by the solid element roughness array.

Effects of Suction on Swept-Wing Transition

NASA Technical Reports Server (NTRS)

Saric, William S.

1998-01-01

Stability experiments are conducted in the Arizona State University Unsteady Wind Tunnel on a 45 deg swept airfoil. The pressure gradient is designed to provide purely crossflow-dominated transition; that is, the boundary layer is subcritical to Tollmien-Schlichting disturbances. The airfoil surface is hand polished to a 0.25 microns rms finish. Under these conditions, stationary crossflow disturbances grow to nonuniform amplitude due to submicron surface irregularities near the leading edge. Uniform stationary crossflow waves are produced by controlling the initial conditions with spanwise arrays of micron-sized roughness elements near the attachment line. Hot-wire measurements provide detailed maps of the crossflow wave structure, and accurate spectral decompositions isolate individual-mode growth rates for the fundamental and harmonic disturbances. Roughness spacing, roughness height, and Reynolds number are varied to investigate the growth of all amplified wavelengths. The measurements show early nonlinear mode interaction causing amplitude saturation well before transition. Comparisons with nonlinear parabolized stability equations calculations show excellent agreement in both the disturbance amplitude and the mode-shape profiles.

Near-field flow structures about subcritical surface roughness

NASA Astrophysics Data System (ADS)

Doolittle, Charles J.; Drews, Scott D.; Goldstein, David B.

2014-12-01

Laminar flow over a periodic array of cylindrical surface roughness elements is simulated with an immersed boundary spectral method both to validate the method for subsequent studies and to examine how persistent streamwise vortices are introduced by a low Reynolds number roughness element. Direct comparisons are made with prior studies at a roughness-based Reynolds number Rek (=U(k) k/ν) of 205 and a diameter to spanwise spacing ratio d/λ of 1/3. Downstream velocity contours match present and past experiments very well. The shear layer developed over the top of the roughness element produces the downstream velocity deficit. Upstream of the roughness element, the vortex topology is found to be consistent with juncture flow experiments, creating three cores along the recirculation line. Streamtraces stemming from these upstream cores, however, have unexpectedly little effect on the downstream flowfield as lateral divergence of the boundary layer quickly dissipates their vorticity. Long physical relaxation time of the recirculating wake behind the roughness remains a prominent issue for simulating this type of flowfield.

Influence of the three-dimensional heterogeneous roughness on electrokinetic transport in microchannels.

PubMed

Hu, Yandong; Werner, Carsten; Li, Dongqing

2004-12-15

Surface roughness has been considered as a passive means of enhancing species mixing in electroosmotic flow through microfluidic systems. It is highly desirable to understand the synergetic effect of three-dimensional (3D) roughness and surface heterogeneity on the electrokinetic flow through microchannels. In this study, we developed a three-dimensional finite-volume-based numerical model to simulate electroosmotic transport in a slit microchannel (formed between two parallel plates) with numerous heterogeneous prismatic roughness elements arranged symmetrically and asymmetrically on the microchannel walls. We consider that all 3D prismatic rough elements have the same surface charge or zeta potential, the substrate (the microchannel wall) surface has a different zeta potential. The results showed that the rough channel's geometry and the electroosmotic mobility ratio of the roughness elements' surface to that of the substrate, epsilon(mu), have a dramatic influence on the induced-pressure field, the electroosmotic flow patterns, and the electroosmotic flow rate in the heterogeneous rough microchannels. The associated sample-species transport presents a tidal-wave-like concentration field at the intersection between four neighboring rough elements under low epsilon(mu) values and has a concentration field similar to that of the smooth channels under high epsilon(mu) values.

The Long Range Persistence of Wakes Behind a Row of Roughness Elements

NASA Technical Reports Server (NTRS)

Goldstein, M. E.; Sescu, Adrian; Duck, Peter W.; Choudhari, Meelan

2010-01-01

We consider a periodic array of relatively small roughness elements whose spanwise separation is of the order of the local boundary-layer thickness and construct a local asymptotic high-Reynolds-number solution that is valid in the vicinity of the roughness. The resulting flow decays on the very short streamwise length scale of the roughness, but the solution eventually becomes invalid at large downstream distances and a new solution has to be constructed in the downstream region. This latter result shows that the roughness-generated wakes can persist over very long streamwise distances, which are much longer than the distance between the roughness elements and the leading edge. Detailed numerical results are given for the far wake structure.

Effect of surface morphology on drag and roughness sublayer in flows over regular roughness elements

NASA Astrophysics Data System (ADS)

Placidi, Marco; Ganapathisubramani, Bharathram

2014-11-01

The effects of systematically varied roughness morphology on bulk drag and on the spatial structure of turbulent boundary layers are examined by performing a series of wind tunnel experiments. In this study, rough surfaces consisting of regularly and uniformly distributed LEGO™ bricks are employed. Twelve different patterns are adopted in order to methodically examine the individual effects of frontal solidity (λF, frontal area of the roughness elements per unit wall-parallel area) and plan solidity (λP, plan area of roughness elements per unit wall-parallel area), on both the bulk drag and the turbulence structure. A floating element friction balance based on Krogstad & Efros (2010) was designed and manufactured to measure the drag generated by the different surfaces. In parallel, high resolution planar and stereoscopic Particle Image Velocimetry (PIV) was applied to investigate the flow features. This talk will focus on the effects of each solidity parameter on the bulk drag and attempt to relate the observed trends to the flow structures in the roughness sublayer. Currently at City University London.

Direct numerical simulation of instabilities in parallel flow with spherical roughness elements

NASA Technical Reports Server (NTRS)

Deanna, R. G.

1992-01-01

Results from a direct numerical simulation of laminar flow over a flat surface with spherical roughness elements using a spectral-element method are given. The numerical simulation approximates roughness as a cellular pattern of identical spheres protruding from a smooth wall. Periodic boundary conditions on the domain's horizontal faces simulate an infinite array of roughness elements extending in the streamwise and spanwise directions, which implies the parallel-flow assumption, and results in a closed domain. A body force, designed to yield the horizontal Blasius velocity in the absence of roughness, sustains the flow. Instabilities above a critical Reynolds number reveal negligible oscillations in the recirculation regions behind each sphere and in the free stream, high-amplitude oscillations in the layer directly above the spheres, and a mean profile with an inflection point near the sphere's crest. The inflection point yields an unstable layer above the roughness (where U''(y) is less than 0) and a stable region within the roughness (where U''(y) is greater than 0). Evidently, the instability begins when the low-momentum or wake region behind an element, being the region most affected by disturbances (purely numerical in this case), goes unstable and moves. In compressible flow with periodic boundaries, this motion sends disturbances to all regions of the domain. In the unstable layer just above the inflection point, the disturbances grow while being carried downstream with a propagation speed equal to the local mean velocity; they do not grow amid the low energy region near the roughness patch. The most amplified disturbance eventually arrives at the next roughness element downstream, perturbing its wake and inducing a global response at a frequency governed by the streamwise spacing between spheres and the mean velocity of the most amplified layer.

A high-order multi-zone cut-stencil method for numerical simulations of high-speed flows over complex geometries

NASA Astrophysics Data System (ADS)

Greene, Patrick T.; Eldredge, Jeff D.; Zhong, Xiaolin; Kim, John

2016-07-01

In this paper, we present a method for performing uniformly high-order direct numerical simulations of high-speed flows over arbitrary geometries. The method was developed with the goal of simulating and studying the effects of complex isolated roughness elements on the stability of hypersonic boundary layers. The simulations are carried out on Cartesian grids with the geometries imposed by a third-order cut-stencil method. A fifth-order hybrid weighted essentially non-oscillatory scheme was implemented to capture any steep gradients in the flow created by the geometries and a third-order Runge-Kutta method is used for time advancement. A multi-zone refinement method was also utilized to provide extra resolution at locations with expected complex physics. The combination results in a globally fourth-order scheme in space and third order in time. Results confirming the method's high order of convergence are shown. Two-dimensional and three-dimensional test cases are presented and show good agreement with previous results. A simulation of Mach 3 flow over the logo of the Ubuntu Linux distribution is shown to demonstrate the method's capabilities for handling complex geometries. Results for Mach 6 wall-bounded flow over a three-dimensional cylindrical roughness element are also presented. The results demonstrate that the method is a promising tool for the study of hypersonic roughness-induced transition.

Investigation of secondary flows in turbulent pipe flows with three-dimensional sinusoidal walls

NASA Astrophysics Data System (ADS)

Chan, Leon; MacDonald, Michael; Chung, Daniel; Hutchins, Nicholas; Ooi, Andrew

2017-11-01

The occurrence of secondary flows is systematically investigated via Direct Numerical Simulations (DNS) of turbulent flow in a rough wall pipe at friction Reynolds numbers of 540. In this study, the peak-to-trough height of the roughness elements, which consist of three-dimensional sinusoidal roughness, is fixed at 120 viscous units while the wavelength of the roughness elements is varied. The solidity or effective slope (ES) of the roughness ranges from the sparse regime (ES = 0.18) to the closely packed roughness/dense regime (ES = 0.72). The time-independent dispersive stresses, which arise due to the stationary features of the flow, are analysed and are found to increase with increasing roughness wavelength. These dispersive stresses are related to the occurrence of secondary flows and are maximum within the roughness canopy. Above the crest of the roughness elements, the dispersive stresses reduce to zero at wall-normal heights greater than half of the roughness wavelength. This study has found that the size and wall-normal extent of the secondary flows scales with the roughness wavelength and can reach wall-normal heights of almost half of the pipe radius.

Variation in bed level shear stress on surfaces sheltered by nonerodible roughness elements

NASA Astrophysics Data System (ADS)

Sutton, Stephen L. F.; McKenna-Neuman, Cheryl

2008-09-01

Direct bed level observations of surface shear stress, pressure gradient variability, turbulence intensity, and fluid flow patterns were carried out in the vicinity of cylindrical roughness elements mounted in a boundary layer wind tunnel. Paired corkscrew vortices shed from each of the elements result in elevated shear stress and increased potential for the initiation of particle transport within the far wake. While the size and shape of these trailing vortices change with the element spacing, they persist even for large roughness densities. Wake interference coincides with the impingement of the upwind horseshoe vortices upon one another at a point when their diameter approaches half the distance between the roughness elements. While the erosive capability of the horseshoe vortex has been suggested for a variety of settings, the present study shows that the fluid stress immediately beneath this coherent structure is actually small in comparison to that caused by compression of the incident flow as it is deflected around the element and attached vortex. Observations such as these are required for further refinement of models of stress partitioning on rough surfaces.

Convection from Hemispherical and Conical Model Ice Roughness Elements in Stagnation Region Flows

NASA Technical Reports Server (NTRS)

Hughes, Michael T.; Shannon, Timothy A.; McClain, Stephen T.; Vargas, Mario; Broeren, Andy

2016-01-01

To improve ice accretion prediction codes, more data regarding ice roughness and its effects on convective heat transfer are required. The Vertical Icing Studies Tunnel (VIST) at NASA Glenn Research was used to model realistic ice roughness in the stagnation region of a NACA 0012 airfoil. In the VIST, a test plate representing the leading 2% chord of the airfoil was subjected to flows of 7.62 m/s (25 ft/s), 12.19 m/s (40 ft/s), and 16.76 m/s (55 ft/s). The test plate was fitted with multiple surfaces or sets of roughness panels, each with a different representation of ice roughness. The sets of roughness panels were constructed using two element distribution patterns that were created based on a laser scan of an iced airfoil acquired in the Icing Research Tunnel at NASA Glenn. For both roughness patterns, surfaces were constructed using plastic hemispherical elements, plastic conical elements, and aluminum conical elements. Infrared surface thermometry data from tests run in the VIST were used to calculate area averaged heat transfer coefficient values. The values from the roughness surfaces were compared to the smooth control surface, showing convective enhancement as high as 400% in some cases. The data gathered during this study will ultimately be used to improve the physical modeling in LEWICE or other ice accretion codes and produce predictions of in-flight ice accretion on aircraft surfaces with greater confidence.

Investigation of wall-bounded turbulence over regularly distributed roughness

NASA Astrophysics Data System (ADS)

Placidi, Marco; Ganapathisubramani, Bharathram

2012-11-01

The effects of regularly distributed roughness elements on the structure of a turbulent boundary layer are examined by performing a series of Planar (high resolution l+ ~ 30) and Stereoscopic Particle Image Velocimetry (PIV) experiments in a wind tunnel. An adequate description of how to best characterise a rough wall, especially one where the density of roughness elements is sparse, is yet to be developed. In this study, rough surfaces consisting of regularly and uniformly distributed LEGO® blocks are used. Twelve different patterns are adopted in order to systematically examine the effects of frontal solidity (λf, frontal area of the roughness elements per unit wall-parallel area) and plan solidity (λp, plan area of roughness elements per unit wall-parallel area), on the turbulence structure. The Karman number, Reτ , is approximately 4000 across the different cases. Spanwise 3D vector fields at two different wall-normal locations (top of the canopy and within the log-region) are also compared to examine the spanwise homogeneity of the flow across different surfaces. In the talk, a detailed analysis of mean and rms velocity profiles, Reynolds stresses, and quadrant decomposition for the different patterns will be presented.

Photomask CD and LER characterization using Mueller matrix spectroscopic ellipsometry

NASA Astrophysics Data System (ADS)

Heinrich, A.; Dirnstorfer, I.; Bischoff, J.; Meiner, K.; Ketelsen, H.; Richter, U.; Mikolajick, T.

2014-10-01

Critical dimension and line edge roughness on photomask arrays are determined with Mueller matrix spectroscopic ellipsometry. Arrays with large sinusoidal perturbations are measured for different azimuth angels and compared with simulations based on rigorous coupled wave analysis. Experiment and simulation show that line edge roughness leads to characteristic changes in the different Mueller matrix elements. The influence of line edge roughness is interpreted as an increase of isotropic character of the sample. The changes in the Mueller matrix elements are very similar when the arrays are statistically perturbed with rms roughness values in the nanometer range suggesting that the results on the sinusoidal test structures are also relevant for "real" mask errors. Critical dimension errors and line edge roughness have similar impact on the SE MM measurement. To distinguish between both deviations, a strategy based on the calculation of sensitivities and correlation coefficients for all Mueller matrix elements is shown. The Mueller matrix elements M13/M31 and M34/M43 are the most suitable elements due to their high sensitivities to critical dimension errors and line edge roughness and, at the same time, to a low correlation coefficient between both influences. From the simulated sensitivities, it is estimated that the measurement accuracy has to be in the order of 0.01 and 0.001 for the detection of 1 nm critical dimension error and 1 nm line edge roughness, respectively.

Comparison of aerodynamically and model-derived roughness lengths (zo) over diverse surfaces, central Mojave Desert, California, USA

USGS Publications Warehouse

MacKinnon, D.J.; Clow, G.D.; Tigges, R.K.; Reynolds, R.L.; Chavez, P.S.

2004-01-01

The vulnerability of dryland surfaces to wind erosion depends importantly on the absence or the presence and character of surface roughness elements, such as plants, clasts, and topographic irregularities that diminish wind speed near the surface. A model for the friction velocity ratio has been developed to account for wind sheltering by many different types of co-existing roughness elements. Such conditions typify a monitored area in the central Mojave Desert, California, that experiences frequent sand movement and dust emission. Two additional models are used to convert the friction velocity ratio to the surface roughness length (zo) for momentum. To calculate roughness lengths from these models, measurements were made at 11 sites within the monitored area to characterize the surface roughness element. Measurements included (1) the number of roughness species (e.g., plants, small-scale topography, clasts), and their associated heights and widths, (2) spacing among species, and (3) vegetation porosity (a measurement of the spatial distribution of woody elements of a plant). Documented or estimated values of drag coefficients for different species were included in the modeling. At these sites, wind-speed profiles were measured during periods of neutral atmospheric stability using three 9-m towers with three or four calibrated anemometers on each. Modeled roughness lengths show a close correspondence (correlation coefficient, 0.84-0.86) to the aerodynamically determined values at the field sites. The geometric properties of the roughness elements in the model are amenable to measurement at much higher temporal and spatial resolutions using remote-sensing techniques than can be accomplished through laborious ground-based methods. A remote-sensing approach to acquire values of the modeled roughness length is particularly important for the development of linked surface/atmosphere wind-erosion models sensitive to climate variability and land-use changes in areas such as the southwestern United States, where surface roughness has large spatial and temporal variations. ?? 2004 Elsevier B.V. All rights reserved.

Shuttle Return To Flight Experimental Results: Protuberance Effects on Boundary Layer Transition

NASA Technical Reports Server (NTRS)

Liechty, Derek S.; Berry, Scott A.; Horvath, Thomas J.

2006-01-01

The effect of isolated roughness elements on the windward boundary layer of the Shuttle Orbiter has been experimentally examined in the Langley Aerothermodynamic Laboratory in support of an agency-wide effort to prepare the Shuttle Orbiter for return to flight. This experimental effort was initiated to provide a roughness effects database for developing transition criteria to support on-orbit decisions to repair damage to the thermal protection system. Boundary layer transition results were obtained using trips of varying heights and locations along the centerline and attachment lines of 0.0075-scale models. Global heat transfer images using phosphor thermography of the Orbiter windward surface and the corresponding heating distributions were used to infer the state of the boundary layer (laminar, transitional, or turbulent). The database contained within this report will be used to formulate protuberance-induced transition correlations using predicted boundary layer edge parameters.

Modelling turbulent boundary layer flow over fractal-like multiscale terrain using large-eddy simulations and analytical tools.

PubMed

Yang, X I A; Meneveau, C

2017-04-13

In recent years, there has been growing interest in large-eddy simulation (LES) modelling of atmospheric boundary layers interacting with arrays of wind turbines on complex terrain. However, such terrain typically contains geometric features and roughness elements reaching down to small scales that typically cannot be resolved numerically. Thus subgrid-scale models for the unresolved features of the bottom roughness are needed for LES. Such knowledge is also required to model the effects of the ground surface 'underneath' a wind farm. Here we adapt a dynamic approach to determine subgrid-scale roughness parametrizations and apply it for the case of rough surfaces composed of cuboidal elements with broad size distributions, containing many scales. We first investigate the flow response to ground roughness of a few scales. LES with the dynamic roughness model which accounts for the drag of unresolved roughness is shown to provide resolution-independent results for the mean velocity distribution. Moreover, we develop an analytical roughness model that accounts for the sheltering effects of large-scale on small-scale roughness elements. Taking into account the shading effect, constraints from fundamental conservation laws, and assumptions of geometric self-similarity, the analytical roughness model is shown to provide analytical predictions that agree well with roughness parameters determined from LES.This article is part of the themed issue 'Wind energy in complex terrains'. © 2017 The Author(s).

Transition in a Supersonic Boundary-Layer Due to Roughness and Acoustic Disturbances

NASA Technical Reports Server (NTRS)

Balakumar, P.

2003-01-01

The transition process induced by the interaction of an isolated roughness with acoustic disturbances in the free stream is numerically investigated for a boundary layer over a flat plate with a blunted leading edge at a free stream Mach number of 3.5. The roughness is assumed to be of Gaussian shape and the acoustic disturbances are introduced as boundary condition at the outer field. The governing equations are solved using the 5'h-rder accurate weighted essentially non-oscillatory (WENO) scheme for space discretization and using third- order total-variation-diminishing (TVD) Runge- Kutta scheme for time integration. The steady field induced by the two and three-dimensional roughness is also computed. The flow field induced by two-dimensional roughness exhibits different characteristics depending on the roughness heights. At small roughness heights the flow passes smoothly over the roughness, at moderate heights the flow separates downstream of the roughness and at larger roughness heights the flow separates upstream and downstream of the roughness. Computations also show that disturbances inside the boundary layer is due to the direct interaction of the acoustic waves and isolated roughness plays a minor role in generating instability waves.

Discrete-Roughness-Element-Enhanced Swept-Wing Natural Laminar Flow at High Reynolds Numbers

NASA Technical Reports Server (NTRS)

Malik, Mujeeb; Liao, Wei; Li, Fei; Choudhari, Meelan

2015-01-01

Nonlinear parabolized stability equations and secondary-instability analyses are used to provide a computational assessment of the potential use of the discrete-roughness-element technology for extending swept-wing natural laminar flow at chord Reynolds numbers relevant to transport aircraft. Computations performed for the boundary layer on a natural-laminar-flow airfoil with a leading-edge sweep angle of 34.6 deg, freestream Mach number of 0.75, and chord Reynolds numbers of 17 × 10(exp 6), 24 × 10(exp 6), and 30 × 10(exp 6) suggest that discrete roughness elements could delay laminar-turbulent transition by about 20% when transition is caused by stationary crossflow disturbances. Computations show that the introduction of small-wavelength stationary crossflow disturbances (i.e., discrete roughness element) also suppresses the growth of most amplified traveling crossflow disturbances.

Hypersonic Viscous Flow Over Large Roughness Elements

NASA Technical Reports Server (NTRS)

Chang, Chau-Lyan; Choudhari, Meelan M.

2009-01-01

Viscous flow over discrete or distributed surface roughness has great implications for hypersonic flight due to aerothermodynamic considerations related to laminar-turbulent transition. Current prediction capability is greatly hampered by the limited knowledge base for such flows. To help fill that gap, numerical computations are used to investigate the intricate flow physics involved. An unstructured mesh, compressible Navier-Stokes code based on the space-time conservation element, solution element (CESE) method is used to perform time-accurate Navier-Stokes calculations for two roughness shapes investigated in wind tunnel experiments at NASA Langley Research Center. It was found through 2D parametric study that at subcritical Reynolds numbers, spontaneous absolute instability accompanying by sustained vortex shedding downstream of the roughness is likely to take place at subsonic free-stream conditions. On the other hand, convective instability may be the dominant mechanism for supersonic boundary layers. Three-dimensional calculations for both a rectangular and a cylindrical roughness element at post-shock Mach numbers of 4.1 and 6.5 also confirm that no self-sustained vortex generation from the top face of the roughness is observed, despite the presence of flow unsteadiness for the smaller post-shock Mach number case.

Numerical Simulation of Roughness-Induced Transient Growth in a Laminar Boundary Layer

NASA Technical Reports Server (NTRS)

Fischer, Paul; Choudhari, Meelan

2004-01-01

Numerical simulations are used to examine the roughness-induced transient growth in a laminar boundary-layer flow. Based on the spectral element method, these simulations model the stationary disturbance field associated with a nonsmooth roughness geometry, such as the spanwise periodic array of circular disks used by White and co-workers during a series of wind tunnel experiments at Case Western Reserve University. Besides capturing the major trends from the recent measurements by White and Ergin, the simulations provide additional information concerning the relative accuracy of the experimental findings derived from two separate wall-finding procedures. The paper also explores the dependence of transient growth on geometric characteristics of the roughness distribution, including the height and planform shape of the roughness element and the ratio of roughness due to spacing between an adjacent pair of elements. Results are used for a preliminary assessment of the differences between recently reported theoretical results of Tumin and Reshotko and the measurements by White and Ergin.

Representation of Vegetation and Other Nonerodible Elements in Aeolian Shear Stress Partitioning Models for Predicting Transport Threshold

NASA Technical Reports Server (NTRS)

King, James; Nickling, William G.; Gillies, John A.

2005-01-01

The presence of nonerodible elements is well understood to be a reducing factor for soil erosion by wind, but the limits of its protection of the surface and erosion threshold prediction are complicated by the varying geometry, spatial organization, and density of the elements. The predictive capabilities of the most recent models for estimating wind driven particle fluxes are reduced because of the poor representation of the effectiveness of vegetation to reduce wind erosion. Two approaches have been taken to account for roughness effects on sediment transport thresholds. Marticorena and Bergametti (1995) in their dust emission model parameterize the effect of roughness on threshold with the assumption that there is a relationship between roughness density and the aerodynamic roughness length of a surface. Raupach et al. (1993) offer a different approach based on physical modeling of wake development behind individual roughness elements and the partition of the surface stress and the total stress over a roughened surface. A comparison between the models shows the partitioning approach to be a good framework to explain the effect of roughness on entrainment of sediment by wind. Both models provided very good agreement for wind tunnel experiments using solid objects on a nonerodible surface. However, the Marticorena and Bergametti (1995) approach displays a scaling dependency when the difference between the roughness length of the surface and the overall roughness length is too great, while the Raupach et al. (1993) model's predictions perform better owing to the incorporation of the roughness geometry and the alterations to the flow they can cause.

Spatial characteristics of secondary flow in a turbulent boundary layer over longitudinal surface roughness

NASA Astrophysics Data System (ADS)

Hwang, Hyeon Gyu; Lee, Jae Hwa

2017-11-01

Direct numerical simulations of turbulent boundary layers (TBLs) over spanwise heterogeneous surface roughness are performed to investigate the characteristics of secondary flow. The longitudinal surface roughness, which features lateral change in bed elevation, is described by immersed boundary method. The Reynolds number based on the momentum thickness is varied in the range of Reθ = 300-900. As the TBLs over the roughness elements spatially develop in the streamwise direction, a secondary flow emerges in a form of counter-rotating vortex pair. As the spanwise spacing between the roughness elements and roughness width vary, it is shown that the size of the secondary flow is determined by the valley width between the roughness elements. In addition, the strength of the secondary flow is mostly affected by the spanwise distance between the cores of the secondary flow. Analysis of the Reynolds-averaged turbulent kinetic energy transport equation reveals that the energy redistribution terms in the TBLs over-the ridge type roughness play an important role to derive low-momentum pathways with upward motion over the roughness crest, contrary to the previous observation with the strip-type roughness. This research was supported by the National Research Foundation of Korea (NRF) funded by the Ministry of Education (NRF-2017R1D1A1A09000537) and the Ministry of Science, ICT & Future Planning (NRF-2017R1A5A1015311).

Flow transition with 2-D roughness elements in a 3-D channel

NASA Technical Reports Server (NTRS)

Liu, Zhining; Liu, Chaoquin; Mccormick, Stephen F.

1993-01-01

We develop a new numerical approach to study the spatially evolving instability of the streamwise dominant flow in the presence of roughness elements. The difficulty in handling the flow over the boundary surface with general geometry is removed by using a new conservative form of the governing equations and an analytical mapping. The numerical scheme uses second-order backward Euler in time, fourth-order central differences in all three spatial directions, and boundary-fitted staggered grids. A three-dimensional channel with multiple two-dimensional-type roughness elements is employed as the test case. Fourier analysis is used to decompose different Fourier modes of the disturbance. The results show that surface roughness leads to transition at lower Reynolds number than for smooth channels.

Interactions of bluff-body obstacles with turbulent airflows affecting evaporative fluxes from porous surfaces

NASA Astrophysics Data System (ADS)

Haghighi, Erfan; Or, Dani

2015-11-01

Bluff-body obstacles interacting with turbulent airflows are common in many natural and engineering applications (from desert pavement and shrubs over natural surfaces to cylindrical elements in compact heat exchangers). Even with obstacles of simple geometry, their interactions within turbulent airflows result in a complex and unsteady flow field that affects surface drag partitioning and transport of scalars from adjacent evaporating surfaces. Observations of spatio-temporal thermal patterns on evaporating porous surfaces adjacent to bluff-body obstacles depict well-defined and persistent zonation of evaporation rates that were used to construct a simple mechanistic model for surface-turbulence interactions. Results from evaporative drying of sand surfaces with isolated cylindrical elements (bluff bodies) subjected to constant turbulent airflows were in good agreement with model predictions for localized exchange rates. Experimental and theoretical results show persistent enhancement of evaporative fluxes from bluff-rough surfaces relative to smooth flat surfaces under similar conditions. The enhancement is attributed to formation of vortices that induce a thinner boundary layer over part of the interacting surface footprint. For a practical range of air velocities (0.5-4.0 m/s), low-aspect ratio cylindrical bluff elements placed on evaporating sand surfaces enhanced evaporative mass losses (relative to a flat surface) by up to 300% for high density of elements and high wind velocity, similar to observations reported in the literature. Concepts from drag partitioning were used to generalize the model and upscale predictions to evaporation from surfaces with multiple obstacles for potential applications to natural bluff-rough surfaces.

Recycling inflow method for simulations of spatially evolving turbulent boundary layers over rough surfaces

NASA Astrophysics Data System (ADS)

Yang, Xiang I. A.; Meneveau, Charles

2016-01-01

The technique by Lund et al. to generate turbulent inflow for simulations of developing boundary layers over smooth flat plates is extended to the case of surfaces with roughness elements. In the Lund et al. method, turbulent velocities on a sampling plane are rescaled and recycled back to the inlet as inflow boundary condition. To rescale mean and fluctuating velocities, appropriate length scales need be identified and for smooth surfaces, the viscous scale lν = ν/uτ (where ν is the kinematic viscosity and uτ is the friction velocity) is employed for the inner layer. Different from smooth surfaces, in rough wall boundary layers the length scale of the inner layer, i.e. the roughness sub-layer scale ld, must be determined by the geometric details of the surface roughness elements and the flow around them. In the proposed approach, it is determined by diagnosing dispersive stresses that quantify the spatial inhomogeneity caused by the roughness elements in the flow. The scale ld is used for rescaling in the inner layer, and the boundary layer thickness δ is used in the outer region. Both parts are then combined for recycling using a blending function. Unlike the blending function proposed by Lund et al. which transitions from the inner layer to the outer layer at approximately 0.2δ, here the location of blending is shifted upwards to enable simulations of very rough surfaces in which the roughness length may exceed the height of 0.2δ assumed in the traditional method. The extended rescaling-recycling method is tested in large eddy simulation of flow over surfaces with various types of roughness element shapes.

Numerical analysis of the effect of surface roughness on mechanical fields in polycrystalline aggregates

NASA Astrophysics Data System (ADS)

Guilhem, Yoann; Basseville, Stéphanie; Curtit, François; Stéphan, Jean-Michel; Cailletaud, Georges

2018-06-01

This paper is dedicated to the study of the influence of surface roughness on local stress and strain fields in polycrystalline aggregates. Finite element computations are performed with a crystal plasticity model on a 316L stainless steel polycrystalline material element with different roughness states on its free surface. The subsequent analysis of the plastic strain localization patterns shows that surface roughness strongly affects the plastic strain localization induced by crystallography. Nevertheless, this effect mainly takes place at the surface and vanishes under the first layer of grains, which implies the existence of a critical perturbed depth. A statistical analysis based on the plastic strain distribution obtained for different roughness levels provides a simple rule to define the size of the affected zone depending on the rough surface parameters.

Effect of sound on boundary layer stability

NASA Technical Reports Server (NTRS)

Saric, William S. (Principal Investigator); Spencer, Shelly Anne

1993-01-01

Experiments are conducted in the Arizona State University Unsteady Wind Tunnel with a zero-pressure-gradient flat-plate model that has a 67:1 elliptical leading edge. Boundary-layer measurements are made of the streamwise fluctuating-velocity component in order to identify the amplified T-S waves that are forced by downstream-travelling, sound waves. Measurements are taken with circular 3-D roughness elements placed at the Branch 1 neutral stability point for the frequency under consideration, and then with the roughness element downstream of Branch 1. These roughness elements have a principal chord dimension equal to 2(lambda)(sub TS)/pi, of the T-S waves under study and are 'stacked' in order to resemble a Gaussian height distribution. Measurements taken just downstream of the roughness (with leading-edge T-S waves, surface roughness T-S waves, instrumentation sting vibrations and the Stokes wave subtracted) show the generation of 3-D-T-S waves, but not in the characteristic heart-shaped disturbance field predicted by 3-D asymptotic theory. Maximum disturbance amplitudes are found on the roughness centerline. However, some near-field characteristics predicted by numerical modelling are observed.

Effect of sound on boundary layer stability

NASA Technical Reports Server (NTRS)

Saric, William S.; Spencer, Shelly Anne

1993-01-01

Experiments are conducted in the Arizona State University Unsteady Wind Tunnel with a zero-pressure-gradient flat-plate model that has a 67:1 elliptical leading edge. Boundary-layer measurements are made of the streamwise fluctuating-velocity component in order to identify the amplified T-S waves that are forced by downstream-traveling sound waves. Measurements are taken with circular 3-D roughness elements placed at the Branch 1 neutral stability point for the frequency under consideration, and then with the roughness element downstream of Branch 1. These roughness elements have a principal chord dimension equal to 2 lambda(sub TS)/pi of the T-S waves under study and are 'stacked' in order to resemble a Gaussian height distribution. Measurements taken just downstream of the roughness (with leading-edge T-S waves, surface roughness T-S waves, instrumentation sting vibrations, and the Stokes wave subtracted) show the generation of 3-D T-S waves, but not in the characteristic heart-shaped disturbance field predicted by 3-D asymptotic theory. Maximum disturbance amplitudes are found on the roughness centerline. However, some near-field characteristics predicted by numerical modeling are observed.

Effects of Roof-Edge Roughness on Air Temperature and Pollutant Concentration in Urban Canyons

NASA Astrophysics Data System (ADS)

Aliabadi, Amir A.; Krayenhoff, E. Scott; Nazarian, Negin; Chew, Lup Wai; Armstrong, Peter R.; Afshari, Afshin; Norford, Leslie K.

2017-08-01

The influence of roof-edge roughness elements on airflow, heat transfer, and street-level pollutant transport inside and above a two-dimensional urban canyon is analyzed using an urban energy balance model coupled to a large-eddy simulation model. Simulations are performed for cold (early morning) and hot (mid afternoon) periods during the hottest month of the year (August) for the climate of Abu Dhabi, United Arab Emirates. The analysis suggests that early in the morning, and when the tallest roughness elements are implemented, the temperature above the street level increases on average by 0.5 K, while the pollutant concentration decreases by 2% of the street-level concentration. For the same conditions in mid afternoon, the temperature decreases conservatively by 1 K, while the pollutant concentration increases by 7% of the street-level concentration. As a passive or active architectural solution, the roof roughness element shows promise for improving thermal comfort and air quality in the canyon for specific times, but this should be further verified experimentally. The results also warrant a closer look at the effects of mid-range roughness elements in the urban morphology on atmospheric dynamics so as to improve parametrizations in mesoscale modelling.

Hypersonic Viscous Flow Over Large Roughness Elements

NASA Technical Reports Server (NTRS)

Chang, Chau-Lyan; Choudhari, Meelan M.

2009-01-01

Viscous flow over discrete or distributed surface roughness has great implications for hypersonic flight due to aerothermodynamic considerations related to laminar-turbulent transition. Current prediction capability is greatly hampered by the limited knowledge base for such flows. To help fill that gap, numerical computations are used to investigate the intricate flow physics involved. An unstructured mesh, compressible Navier-Stokes code based on the space-time conservation element, solution element (CESE) method is used to perform time-accurate Navier-Stokes calculations for two roughness shapes investigated in wind tunnel experiments at NASA Langley Research Center. It was found through 2D parametric study that at subcritical Reynolds numbers of the boundary layers, absolute instability resulting in vortex shedding downstream, is likely to weaken at supersonic free-stream conditions. On the other hand, convective instability may be the dominant mechanism for supersonic boundary layers. Three-dimensional calculations for a rectangular or cylindrical roughness element at post-shock Mach numbers of 4.1 and 6.5 also confirm that no self-sustained vortex generation is present.

Form drag in rivers due to small-scale natural topographic features: 1. Regular sequences

USGS Publications Warehouse

Kean, J.W.; Smith, J.D.

2006-01-01

Small-scale topographic features are commonly found on the boundaries of natural rivers, streams, and floodplains. A simple method for determining the form drag on these features is presented, and the results of this model are compared to laboratory measurements. The roughness elements are modeled as Gaussian-shaped features defined in terms of three parameters: a protrusion height, H; a streamwise length scale, ??; and a spacing between crests, ??. This shape is shown to be a good approximation to a wide variety of natural topographic bank features. The form drag on an individual roughness element embedded in a series of identical elements is determined using the drag coefficient of the individual element and a reference velocity that includes the effects of roughness elements further upstream. In addition to calculating the drag on each element, the model determines the spatially averaged total stress, skin friction stress, and roughness height of the boundary. The effects of bank roughness on patterns of velocity and boundary shear stress are determined by combining the form drag model with a channel flow model. The combined model shows that drag on small-scale topographic features substantially alters the near-bank flow field. These methods can be used to improve predictions of flow resistance in rivers and to form the basis for fully predictive (no empirically adjusted parameters) channel flow models. They also provide a foundation for calculating the near-bank boundary shear stress fields necessary for determining rates of sediment transport and lateral erosion.

Discrete surface roughness effects on a blunt hypersonic cone in a quiet tunnel

NASA Astrophysics Data System (ADS)

Sharp, Nicole; White, Edward

2013-11-01

The mechanisms by which surface roughness creates boundary-layer disturbances in hypersonic flow are little understood. Work by Reshotko (AIAA 2008-4294) and others suggests that transient growth, resulting from the superposition of decaying non-orthogonal modes, may be responsible. The present study examines transient growth experimentally using a smooth 5-degree half-angle conic frustum paired with blunted nosetips with and without an azimuthal array of discrete roughness elements. A combination of hotwire anemometry and Pitot measurements in the low-disturbance Mach 6 Quiet Tunnel are used for boundary layer profiles downstream of the ring of roughness elements as well as azimuthal measurements to examine the high- and low-speed streaks characteristic of transient growth of stationary roughness-induced disturbances.

Tomographic PIV investigation of roughness-induced transition in a hypersonic boundary layer

NASA Astrophysics Data System (ADS)

Avallone, F.; Ye, Q.; Schrijer, F. F. J.; Scarano, F.; Cardone, G.

2014-11-01

The disturbance generated by roughness elements in a hypersonic laminar boundary layer is investigated, with attention to its three-dimensional properties. The transition of the boundary layer is inspected with tomographic particle image velocimetry that is applied for the first time at Mach 7.5 inside a short duration hypersonic wind tunnel. A low aspect ratio cylindrical roughness element is installed on a flat plate, and experiments are conducted downstream of the element describing the mean velocity field and the turbulent fluctuations. Details of the experimental procedure needed to realize these measurements are discussed, along with the fluid dynamic behaviour of the perturbed hypersonic boundary layer.

Electrochemical machining process for forming surface roughness elements on a gas turbine shroud

DOEpatents

Lee, Ching-Pang; Johnson, Robert Alan; Wei, Bin; Wang, Hsin-Pang

2002-01-01

The back side recessed cooling surface of a shroud defining in part the hot gas path of a turbine is electrochemically machined to provide surface roughness elements and spaces therebetween to increase the heat transfer coefficient. To accomplish this, an electrode with insulating dielectric portions and non-insulating portions is disposed in opposition to the cooling surface. By passing an electrolyte between the cooling surface and electrode and applying an electrical current between the electrode and a shroud, roughness elements and spaces therebetween are formed in the cooling surface in opposition to the insulating and non-insulating portions of the electrode, hence increasing the surface area and heat transfer coefficient of the shroud.

Three Dimensional Plenoptic PIV Measurements of a Turbulent Boundary Layer Overlying a Hemispherical Roughness Element

NASA Astrophysics Data System (ADS)

Johnson, Kyle; Thurow, Brian; Kim, Taehoon; Blois, Gianluca; Christensen, Kenneth

2016-11-01

Three-dimensional, three-component (3D-3C) measurements were made using a plenoptic camera on the flow around a roughness element immersed in a turbulent boundary layer. A refractive index matched approach allowed whole-field optical access from a single camera to a measurement volume that includes transparent solid geometries. In particular, this experiment measures the flow over a single hemispherical roughness element made of acrylic and immersed in a working fluid consisting of Sodium Iodide solution. Our results demonstrate that plenoptic particle image velocimetry (PIV) is a viable technique to obtaining statistically-significant volumetric velocity measurements even in a complex separated flow. The boundary layer to roughness height-ratio of the flow was 4.97 and the Reynolds number (based on roughness height) was 4.57×103. Our measurements reveal key flow features such as spiraling legs of the shear layer, a recirculation region, and shed arch vortices. Proper orthogonal decomposition (POD) analysis was applied to the instantaneous velocity and vorticity data to extract these features. Supported by the National Science Foundation Grant No. 1235726.

Aerodynamics of a finite wing with simulated ice

NASA Technical Reports Server (NTRS)

Bragg, M. B.; Khodadoust, A.; Kerho, M.

1992-01-01

The effect of a simulated glaze ice accretion on the aerodynamic performance of a three-dimensional wing is studied experimentally. Results are reviewed from earlier two-dimensional tests which show the character of the large leading-edge separation bubbles caused by the simulated ice accretion. The 2-D bubbles are found to closely resemble well known airfoil laminar separation bubbles. For the 3-D experiments a semispan wing of effective aspect ratio five was mounted from the sidewall of the UIUC subsonic wind tunnel. The model uses a NACA 0012 airfoil section on a rectangular planform with interchangeable tip and root sections to allow for 0- and 30-degree sweep. A three-component sidewall balance was used to measure lift, drag and pitching moment on the clean and iced model. Fluorescent oil flow visualization has been performed on the iced model and reveals extensive spanwise and vortical flow in the separation bubble aft of the upper surface horn. Sidewall interaction and spanwise nonuniformity are also seen on the unswept model. Comparisons to the computed flow fields are shown. Results are also shown for roughness effects on the straight wing. Sand grain roughness on the ice shape is seen to have a different effect than isolated 3-D roughness elements.

On the role of acoustic feedback in boundary-layer instability.

PubMed

Wu, Xuesong

2014-07-28

In this paper, the classical triple-deck formalism is employed to investigate two instability problems in which an acoustic feedback loop plays an essential role. The first concerns a subsonic boundary layer over a flat plate on which two well-separated roughness elements are present. A spatially amplifying Tollmien-Schlichting (T-S) wave between the roughness elements is scattered by the downstream roughness to emit a sound wave that propagates upstream and impinges on the upstream roughness to regenerate the T-S wave, thereby forming a closed feedback loop in the streamwise direction. Numerical calculations suggest that, at high Reynolds numbers and for moderate roughness heights, the long-range acoustic coupling may lead to absolute instability, which is characterized by self-sustained oscillations at discrete frequencies. The dominant peak frequency may jump from one value to another as the Reynolds number, or the distance between the roughness elements, is varied gradually. The second problem concerns the supersonic 'twin boundary layers' that develop along two well-separated parallel flat plates. The two boundary layers are in mutual interaction through the impinging and reflected acoustic waves. It is found that the interaction leads to a new instability that is absent in the unconfined boundary layer. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Convective Enhancement of Icing Roughness Elements in Stagnation Region Flows

NASA Technical Reports Server (NTRS)

Hughes, Michael T.; McClain, Stephen T.; Vargas, Mario; Broeren, Andy

2015-01-01

To improve existing ice accretion simulation codes, more data regarding ice roughness and its effects on convective heat transfer are required. To build on existing research on this topic, this study used the Vertical Icing Studies Tunnel (VIST) at NASA Glenn Research to model realistic ice roughness in the stagnation region of a NACA 0012 airfoil. Using the VIST, a test plate representing the leading 2% chord of the airfoil was subjected to flows of 7.62 m/s (25 ft/s), 12.19 m/s (40 ft/s), and 16.76 m/s (55 ft/s). The test plate was fitted with 3 surfaces, each with a different representation of ice roughness: 1) a control surface with no ice roughness, 2) a surface with ice roughness with element height scaled by 10x and streamwise rough zone width from the stagnation point scaled by 10x, and 3) a surface with ice roughness with element height scaled by 10x and streamwise rough zone width from the stagnation point scaled by 25x. Temperature data from the tests were recorded using an infrared camera and thermocouples imbedded in the test plate. From the temperature data, a convective heat transfer coefficient map was created for each case. Additional testing was also performed to validate the VIST's flow quality. These tests included five-hole probe and hot-wire probe velocity traces to provide flow visualization and to study boundary layer formation on the various test surfaces. The knowledge gained during the experiments will help improve ice accretion codes by providing heat transfer coefficient validation data and by providing flow visualization data helping understand current and future experiments performed in the VIST.

Heat Transfer Measurements on Surfaces with Natural Ice Castings and Modeled Roughness

NASA Technical Reports Server (NTRS)

Breuer, Kenneth S.; Torres, Benjamin E.; Orr, D. J.; Hansman, R. John

1997-01-01

An experimental method is described to measure and compare the convective heat transfer coefficient of natural and simulated ice accretion roughness and to provide a rational means for determining accretion-related enhanced heat transfer coefficients. The natural ice accretion roughness was a sample casting made from accretions at the NASA Lewis Icing Research Tunnel (IRT). One of these castings was modeled using a Spectral Estimation Technique (SET) to produce three roughness elements patterns that simulate the actual accretion. All four samples were tested in a flat-plate boundary layer at angle of attack in a "dry" wind tunnel test. The convective heat transfer coefficient was measured using infrared thermography. It is shown that, dispite some problems in the current data set, the method does show considerable promise in determining roughness-induced heat transfer coefficients, and that, in addition to the roughness height and spacing in the flow direction, the concentration and spacing of elements in the spanwise direction are important parameters.

Experimental Investigation of Average Heat-Transfer and Friction Coefficients for Air Flowing in Circular Tubes Having Square-Thread-Type Roughness

NASA Technical Reports Server (NTRS)

Sams, E. W.

1952-01-01

An investigation of forced-convection heat transfer and associated pressure drops was conducted with air flowing through electrically heated Inconel tubes having various degrees of square-thread-type roughness, an inside diameter of 1/2 inch, and a length of 24 inches. were obtained for tubes having conventional roughness ratios (height of thread/radius of tube) of 0 (smooth tube), 0.016, 0.025, and 0.037 over ranges of bulk Reynolds numbers up to 350,000, average inside-tube-wall temperatures up to 1950deg R, and heat-flux densities up to 115,000 Btu per hour per square foot. Data The experimental data showed that both heat transfer and friction increased with increase in surface roughness, becoming more pronounced with increase in Reynolds number; for a given roughness, both heat transfer and friction were also influenced by the tube wall-to-bulk temperature ratio. Good correlation of the heat-transfer data for all the tubes investigated was obtained by use of a modification of the conventional Nusselt correlation parameters wherein the mass velocity in the Reynolds number was replaced by the product of air density evaluated at the average film temperature and the so-called friction velocity; in addition, the physical properties of air were evaluated at the average film temperature. The isothermal friction data for the rough tubes, when plotted in the conventional manner, resulted in curves similar to those obtained by other investigators; that is, the curve for a given roughness breaks away from the Blasius line (representing turbulent flow in smooth tubes) at some value of Reynolds number, which decreases with increase in surface roughness, and then becomes a horizontal line (friction coefficient independent of Reynolds number). A comparison of the friction data for the rough tubes used herein indicated that the conventional roughness ratio is not an adequate measure of relative roughness for tubes having a square-thread-type element. The present data, as well as those of other investigators, were used to isolate the influence of ratios of thread height to width, thread spacing to width, and the conventional roughness ratio on the friction coefficient. A fair correlation of the friction data was obtained for each tube with heat addition when the friction coefficient and Reynolds number were defined on the basis of film properties; however, the data for each tube retained the curve characteristic of that particular roughness. The friction data for all the rough tubes could be represented by a single line for the complete turbulence region by incorporating a roughness parameter in the film correlation. No correlation was obtained for the region of incomplete turbulence.

A comparison of finite element and analytic models of acoustic scattering from rough poroelastic interfaces.

PubMed

Bonomo, Anthony L; Isakson, Marcia J; Chotiros, Nicholas P

2015-04-01

The finite element method is used to model acoustic scattering from rough poroelastic surfaces. Both monostatic and bistatic scattering strengths are calculated and compared with three analytic models: Perturbation theory, the Kirchhoff approximation, and the small-slope approximation. It is found that the small-slope approximation is in very close agreement with the finite element results for all cases studied and that perturbation theory and the Kirchhoff approximation can be considered valid in those instances where their predictions match those given by the small-slope approximation.

Isolation and characterization of microcrystalline cellulose from roselle fibers.

PubMed

Kian, Lau Kia; Jawaid, Mohammad; Ariffin, Hidayah; Alothman, Othman Y

2017-10-01

In this study, microcrystalline cellulose (MCC) was extracted from roselle fiber through acid hydrolysis treatment and its properties were compared with those of commercially available MCC. The physicochemical and morphological characteristics, elemental composition, size distribution, crystallinity and thermal properties of the obtained MCC were analyzed in this work. Fourier transform infrared spectroscopy (FTIR) analysis provided clear evidence that the characteristic peak of lignin was absent in the spectrum of the MCC prepared from roselle fiber. Rough surface and slight aggregation of MCC were observed by scanning electron microscopy (SEM). Energy dispersive X-ray (EDX) analysis showed that pure MCC with small quantities of residues and impurities was obtained, with a similar elemental composition to that of commercial MCC. A mean diameter of approximately 44.28μm was measured for MCC by using a particle size analyzer (PSA). X-ray diffraction (XRD) showed the crystallinity increased from 63% in roselle pulp to 78% in roselle MCC, the latter having a slightly higher crystallinity than that of commercial MCC (74%). TGA and DSC results indicated that the roselle MCC had better thermal stability than the roselle pulp, whereas it had poorer thermal stability in comparison with commercial MCC. Thus, the isolated MCC from roselle fibers will be going to use as reinforcing element in green composites and may be a precursor for future roselle derived nanocellulose, and thus a promising subject in nanocomposite research. Copyright © 2017 Elsevier B.V. All rights reserved.

Micro PIV measurements of turbulent flow over 2D structured roughness

NASA Astrophysics Data System (ADS)

Hartenberger, Joel; Perlin, Marc

2015-11-01

We investigate the turbulent boundary layer over surfaces with 2D spanwise square and triangular protrusions having nominal heights of 100 - 300 microns for Reynolds numbers ranging from Reτ ~ 1500 through Reτ ~ 4500 using a high speed, high magnification imaging system. Micro PIV analysis gives finely resolved velocity fields of the flow (on the order of 10 microns between vectors) enabling a detailed look at the inner region as well as the flow in the immediate vicinity of the roughness elements. Additionally, planar PIV with lower resolution is performed to capture the remainder of the boundary layer to the freestream flow. Varying the streamwise distance between individual roughness elements from one to ten times the nominal heights allows investigation of k-type and d-type roughness in both the transitionally rough and fully rough regimes. Preliminary results show a shift in the mean velocity profile similar to the results of previous studies. Turbulent statistics will be presented also. The authors would like to acknowledge the support of NAVSEA which funded this project through the Naval Engineering Education Center (NEEC).

Flow formed by spanwise gaps between roughness elements

NASA Technical Reports Server (NTRS)

Logan, E.; Lin, S. H.; Islam, O.

1985-01-01

Measurements of the three mean velocity components and the three Reynolds shear stresses were made in the region downstream of gaps between wall-mounted roughness elements of square cross section and high aspect ratio in a thick turbulent boundary layer. The effect of small and large gaps was studied in a wind tunnel at a Reynolds number of 3600, based on obstacle height and free-stream velocity. The small gap produces retardation of the gap flow as with a two-dimensional roughness element, but a definite interaction between gap and wake flows is observed. The interaction is more intense for the large gap than for the small. Both gaps generate a secondary crossflow which moves fluid away from the centerline in the wall region and toward the centerline in the outer (y greater than 1.5H) region.

Study on light scattering characterization for polishing surface of optical elements

NASA Astrophysics Data System (ADS)

Zhang, Yingge; Tian, Ailing; Wang, Chunhui; Wang, Dasen; Liu, Weiguo

2017-02-01

Based on the principle of bidirectional reflectance distribution function (BRDF), the relationship between the surface roughness and the spatial scattering distribution of the optical elements were studied. First, a series of optical components with different surface roughness was obtained by the traditional polishing processing, and measured by Talysurf CCI 3000. Secondly, the influences of different factors on the scattering characteristics were simulated and analyzed, such as different surface roughness, incident wavelength and incident angle. Finally, the experimental device was built, and the spatial distribution of scattered light was measured with the different conditions, and then the data curve variation was analyzed. It was shown that the experimental method was reliable by comparing the simulation and experimental results. Base on this to know, many studies on light scattering characteristics for optical element polishing surface can try later.

An integral wall model for Large Eddy Simulation (iWMLES) and applications to developing boundary layers over smooth and rough plates

NASA Astrophysics Data System (ADS)

Yang, Xiang; Sadique, Jasim; Mittal, Rajat; Meneveau, Charles

2014-11-01

A new wall model for Large-Eddy-Simulations is proposed. It is based on an integral boundary layer method that assumes a functional form for the local mean velocity profile. The method, iWMLES, evaluates required unsteady and advective terms in the vertically integrated boundary layer equations analytically. The assumed profile contains a viscous or roughness sublayer, and a logarithmic layer with an additional linear term accounting for inertial and pressure gradient effects. The iWMLES method is tested in the context of a finite difference LES code. Test cases include developing turbulent boundary layers on a smooth flat plate at various Reynolds numbers, over flat plates with unresolved roughness, and a sample application to boundary layer flow over a plate that includes resolved roughness elements. The elements are truncated cones acting as idealized barnacle-like roughness elements that often occur in biofouling of marine surfaces. Comparisons with data show that iWMLES provides accurate predictions of near-wall velocity profiles in LES while, similarly to equilibrium wall models, its cost remains independent of Reynolds number and is thus significantly lower compared to standard zonal or hybrid wall models. This work is funded by ONR Grant N00014-12-1-0582 (Dr. R. Joslin, program manager).

Fingerprinting the type of line edge roughness

NASA Astrophysics Data System (ADS)

Fernández Herrero, A.; Pflüger, M.; Scholze, F.; Soltwisch, V.

2017-06-01

Lamellar gratings are widely used diffractive optical elements and are prototypes of structural elements in integrated electronic circuits. EUV scatterometry is very sensitive to structure details and imperfections, which makes it suitable for the characterization of nanostructured surfaces. As compared to X-ray methods, EUV scattering allows for steeper angles of incidence, which is highly preferable for the investigation of small measurement fields on semiconductor wafers. For the control of the lithographic manufacturing process, a rapid in-line characterization of nanostructures is indispensable. Numerous studies on the determination of regular geometry parameters of lamellar gratings from optical and Extreme Ultraviolet (EUV) scattering also investigated the impact of roughness on the respective results. The challenge is to appropriately model the influence of structure roughness on the diffraction intensities used for the reconstruction of the surface profile. The impact of roughness was already studied analytically but for gratings with a periodic pseudoroughness, because of practical restrictions of the computational domain. Our investigation aims at a better understanding of the scattering caused by line roughness. We designed a set of nine lamellar Si-gratings to be studied by EUV scatterometry. It includes one reference grating with no artificial roughness added, four gratings with a periodic roughness distribution, two with a prevailing line edge roughness (LER) and another two with line width roughness (LWR), and four gratings with a stochastic roughness distribution (two with LER and two with LWR). We show that the type of line roughness has a strong impact on the diffuse scatter angular distribution. Our experimental results are not described well by the present modelling approach based on small, periodically repeated domains.

Characterization of Ice Roughness From Simulated Icing Encounters

NASA Technical Reports Server (NTRS)

Anderson, David N.; Shin, Jaiwon

1997-01-01

Detailed measurements of the size of roughness elements on ice accreted on models in the NASA Lewis Icing Research Tunnel (IRT) were made in a previous study. Only limited data from that study have been published, but included were the roughness element height, diameter and spacing. In the present study, the height and spacing data were found to correlate with the element diameter, and the diameter was found to be a function primarily of the non-dimensional parameters freezing fraction and accumulation parameter. The width of the smooth zone which forms at the leading edge of the model was found to decrease with increasing accumulation parameter. Although preliminary, the success of these correlations suggests that it may be possible to develop simple relationships between ice roughness and icing conditions for use in ice-accretion-prediction codes. These codes now require an ice-roughness estimate to determine convective heat transfer. Studies using a 7.6-cm-diameter cylinder and a 53.3-cm-chord NACA 0012 airfoil were also performed in which a 1/2-min icing spray at an initial set of conditions was followed by a 9-1/2-min spray at a second set of conditions. The resulting ice shape was compared with that from a full 10-min spray at the second set of conditions. The initial ice accumulation appeared to have no effect on the final ice shape. From this result, it would appear the accreting ice is affected very little by the initial roughness or shape features.

Direct numerical simulation of flow over dissimilar, randomly distributed roughness elements: A systematic study on the effect of surface morphology on turbulence

NASA Astrophysics Data System (ADS)

Forooghi, Pourya; Stroh, Alexander; Schlatter, Philipp; Frohnapfel, Bettina

2018-04-01

Direct numerical simulations are used to investigate turbulent flow in rough channels, in which topographical parameters of the rough wall are systematically varied at a fixed friction Reynolds number of 500, based on a mean channel half-height h and friction velocity. The utilized roughness generation approach allows independent variation of moments of the surface height probability distribution function [thus root-mean-square (rms) surface height, skewness, and kurtosis], surface mean slope, and standard deviation of the roughness peak sizes. Particular attention is paid to the effect of the parameter Δ defined as the normalized height difference between the highest and lowest roughness peaks. This parameter is used to understand the trends of the investigated flow variables with departure from the idealized case where all roughness elements have the same height (Δ =0 ). All calculations are done in the fully rough regime and for surfaces with high slope (effective slope equal to 0.6-0.9). The rms roughness height is fixed for all cases at 0.045 h and the skewness and kurtosis of the surface height probability density function vary in the ranges -0.33 to 0.67 and 1.9 to 2.6, respectively. The goal of the paper is twofold: first, to investigate the possible effect of topographical parameters on the mean turbulent flow, Reynolds, and dispersive stresses particularly in the vicinity of the roughness crest, and second, to investigate the possibility of using the wall-normal turbulence intensity as a physical parameter for parametrization of the flow. Such a possibility, already suggested for regular roughness in the literature, is here extended to irregular roughness.

Towards predictive models for transitionally rough surfaces

NASA Astrophysics Data System (ADS)

Abderrahaman-Elena, Nabil; Garcia-Mayoral, Ricardo

2017-11-01

We analyze and model the previously presented decomposition for flow variables in DNS of turbulence over transitionally rough surfaces. The flow is decomposed into two contributions: one produced by the overlying turbulence, which has no footprint of the surface texture, and one induced by the roughness, which is essentially the time-averaged flow around the surface obstacles, but modulated in amplitude by the first component. The roughness-induced component closely resembles the laminar steady flow around the roughness elements at the same non-dimensional roughness size. For small - yet transitionally rough - textures, the roughness-free component is essentially the same as over a smooth wall. Based on these findings, we propose predictive models for the onset of the transitionally rough regime. Project supported by the Engineering and Physical Sciences Research Council (EPSRC).

Trace element analysis of rough diamond by LA-ICP-MS: a case of source discrimination?

PubMed

Dalpé, Claude; Hudon, Pierre; Ballantyne, David J; Williams, Darrell; Marcotte, Denis

2010-11-01

Current profiling of rough diamond source is performed using different physical and/or morphological techniques that require strong knowledge and experience in the field. More recently, chemical impurities have been used to discriminate diamond source and with the advance of laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS) empirical profiling of rough diamonds is possible to some extent. In this study, we present a LA-ICP-MS methodology that we developed for analyzing ultra-trace element impurities in rough diamond for origin determination ("profiling"). Diamonds from two sources were analyzed by LA-ICP-MS and were statistically classified by accepted methods. For the two diamond populations analyzed in this study, binomial logistic regression produced a better overall correct classification than linear discriminant analysis. The results suggest that an anticipated matrix match reference material would improve the robustness of our methodology for forensic applications. © 2010 American Academy of Forensic Sciences.

Analysis of full-length sequences of two Citrus yellow mosaic badnavirus isolates infecting Citrus jambhiri (Rough Lemon) and Citrus sinensis L. Osbeck (Sweet Orange) from a nursery in India.

PubMed

Anthony Johnson, A M; Borah, B K; Sai Gopal, D V R; Dasgupta, I

2012-12-01

Citrus yellow mosaic badna virus (CMBV), a member of the Family Caulimoviridae, Genus Badnavirus is the causative agent of mosaic disease among Citrus species in southern India. Despite its reported prevalence in several citrus species, complete information on clear functional genomics or functional information of full-length genomes from all the CMBV isolates infecting citrus species are not available in publicly accessible databases. CMBV isolates from Rough Lemon and Sweet Orange collected from a nursery were cloned and sequenced. The analysis revealed high sequence homology of the two CMBV isolates with previously reported CMBV sequences implying that they represent new variants. Based on computational analysis of the predicted secondary structures, the possible functions of some CMBV proteins have been analyzed.

Design And Ground Testing For The Expert PL4/PL5 'Natural And Roughness Induced Transition'

NASA Astrophysics Data System (ADS)

Masutti, Davie; Chazot, Olivier; Donelli, Raffaele; de Rosa, Donato

2011-05-01

Unpredicted boundary layer transition can impact dramatically the stability of the vehicle, its aerodynamic coefficients and reduce the efficiency of the thermal protection system. In this frame, ESA started the EXPERT (European eXPErimental Reentry Testbed) program to pro- vide and perform in-flight experiments in order to obtain aerothermodynamic data for the validation of numerical models and of ground-to-flight extrapolation methodologies. Considering the boundary layer transition investigation, the EXPERT vehicle is equipped with two specific payloads, PL4 and PL5, concerning respectively the study of the natural and roughness induced transition. The paper is a survey on the design process of these two in-flight experiments and it covers the major analyses and findings encountered during the development of the payloads. A large amount of transition criteria have been investigated and used to estimate either the dangerousness of the height of the distributed roughness, arising due to nose erosion, or the effectiveness of height of the isolated roughness element forcing the boundary layer transition. Supporting the PL4 design, linear stability computations and CFD analyses have been performed by CIRA on the EXPERT flight vehicle to determine the amplification factor of the boundary layer instabilities at different point of the re-entry trajectory. Ground test experiments regarding the PL5 are carried on in the Mach 6 VKI H3 Hypersonic Wind Tunnel with a Reynolds numbers ranging from 18E6/m to 26E6/m. Infrared measurements (Stanton number) and flow visualization are used on a 1/16 scaled model of the EXPERT vehicle and a flat plate to validate the Potter and Whitfield criterion as a suitable methodology for ground-to-flight extrapolation and the payload design.

LEO P: HOW MANY METALS CAN A VERY LOW MASS, ISOLATED GALAXY RETAIN?

DOE Office of Scientific and Technical Information (OSTI.GOV)

McQuinn, Kristen B. W.; Skillman, Evan D.; Dolphin, Andrew

Leo P is a gas-rich dwarf galaxy with an extremely low gas-phase oxygen abundance (3% solar). The isolated nature of Leo P enables a quantitative measurement of metals lost solely due to star formation feedback. We present an inventory of the oxygen atoms in Leo P based on the gas-phase oxygen abundance measurement, the star formation history (SFH), and the chemical enrichment evolution derived from resolved stellar populations. The SFH also provides the total amount of oxygen produced. Overall, Leo P has retained 5% of its oxygen; 25% of the retained oxygen is in the stars while 75% is in the gas phase. Thismore » is considerably lower than the 20%–25% calculated for massive galaxies, supporting the trend for less efficient metal retention for lower-mass galaxies. The retention fraction is higher than that calculated for other alpha elements (Mg, Si, Ca) in dSph Milky Way satellites of similar stellar mass and metallicity. Accounting only for the oxygen retained in stars, our results are consistent with those derived for the alpha elements in dSph galaxies. Thus, under the assumption that the dSph galaxies lost the bulk of their gas mass through an environmental process such as tidal stripping, the estimates of retained metal fractions represent underestimates by roughly a factor of four. Because of its isolation, Leo P provides an important datum for the fraction of metals lost as a function of galaxy mass due to star formation.« less

Comparison of different rubber stoppers; the effect of sterilization on the number of particles released.

PubMed

Mannermaa, J P; Muttonen, E; Yliruusi, J; Juppo, A

1992-01-01

The effect of sterilization on the number of particles released from five different types of rubber stoppers, as well as on their surface roughness and elemental composition before and after sterilization is described. The stoppers were immersed in 200 ml of 0.9% sodium chloride solution in conical flasks. The number of particles released into the sodium chloride solution was measured by Coulter Counter. The surface roughness and the elemental composition of the stoppers were determined by SEM/EDX. All measurements were made both before and after sterilization at 121 degrees C to F0 15 mins. The number of particles released from a stopper during sterilization varies considerably between different stoppers and even between different batches of the same stopper. The only non-siliconized stopper in this study performed well. The absence of surface siliconization may have contributed to this performance. The scanning electron micrographs revealed well the differences in the surface roughness of the stoppers. The sterilization generally increases the surface roughness of the samples. The x-ray microanalysis revealed that the elemental composition of the stoppers may vary not only between different types of stoppers but also between different batches of the same stopper.

Biochemical Basis of Virulence in Epidemic Typhus

DTIC Science & Technology

1979-08-01

felt, however, that this level of phagocytosis was not unusually low because "rough" isolates of Brucella abortis and Pgul m were phagocytized to a...of polymorphonuclear leukocytes with smooth and rough strains of Brucella abortis . Infect. Immun. 23:737-742. 10. Martin, S. P., and R. Green. 1958

Rough set classification based on quantum logic

NASA Astrophysics Data System (ADS)

Hassan, Yasser F.

2017-11-01

By combining the advantages of quantum computing and soft computing, the paper shows that rough sets can be used with quantum logic for classification and recognition systems. We suggest the new definition of rough set theory as quantum logic theory. Rough approximations are essential elements in rough set theory, the quantum rough set model for set-valued data directly construct set approximation based on a kind of quantum similarity relation which is presented here. Theoretical analyses demonstrate that the new model for quantum rough sets has new type of decision rule with less redundancy which can be used to give accurate classification using principles of quantum superposition and non-linear quantum relations. To our knowledge, this is the first attempt aiming to define rough sets in representation of a quantum rather than logic or sets. The experiments on data-sets have demonstrated that the proposed model is more accuracy than the traditional rough sets in terms of finding optimal classifications.

Examination of Surface Roughness on Light Scattering by Long Ice Columns by Use of a Two-Dimensional Finite-Difference Time-Domain Algorithm

NASA Technical Reports Server (NTRS)

Sun, W.; Loeb, N. G.; Videen, G.; Fu, Q.

2004-01-01

Natural particles such as ice crystals in cirrus clouds generally are not pristine but have additional micro-roughness on their surfaces. A two-dimensional finite-difference time-domain (FDTD) program with a perfectly matched layer absorbing boundary condition is developed to calculate the effect of surface roughness on light scattering by long ice columns. When we use a spatial cell size of 1/120 incident wavelength for ice circular cylinders with size parameters of 6 and 24 at wavelengths of 0.55 and 10.8 mum, respectively, the errors in the FDTD results in the extinction, scattering, and absorption efficiencies are smaller than similar to 0.5%. The errors in the FDTD results in the asymmetry factor are smaller than similar to 0.05%. The errors in the FDTD results in the phase-matrix elements are smaller than similar to 5%. By adding a pseudorandom change as great as 10% of the radius of a cylinder, we calculate the scattering properties of randomly oriented rough-surfaced ice columns. We conclude that, although the effect of small surface roughness on light scattering is negligible, the scattering phase-matrix elements change significantly for particles with large surface roughness. The roughness on the particle surface can make the conventional phase function smooth. The most significant effect of the surface roughness is the decay of polarization of the scattered light.

Slip and accommodation coefficients from rarefaction and roughness in rotating microscale disk flows

NASA Astrophysics Data System (ADS)

Blanchard, Danny; Ligrani, Phil

2007-06-01

Accommodation coefficients are determined from experimental results and analysis based on the Navier-Stokes equations for rotation-induced flows in C-shaped fluid chamber passages formed between a rotating disk and a stationary surface. A first-order boundary condition is used to model the slip flow. The fluid chamber passage height ranges from 6.85to29.2μm to give Knudsen numbers from 0.0025 to 0.031 for air and helium. In all cases, roughness size is large compared to molecular mean free path. The unique method presented for deducing tangential momentum accommodation coefficients gives values with less uncertainty compared to procedures that rely on flows in stationary tubes and channels. When channel height is defined at the tops of the roughness elements, slip velocity magnitudes and associated accommodation coefficients are a result of rarefaction at solid-gas interfaces and shear at the gas-gas interfaces. With this arrangement, tangential accommodation coefficients obtained with this approach decrease, and slip velocity magnitudes increase, at a particular value of Knudsen number, as the level of surface roughness increases. At values of the mean roughness height greater than 500nm, accommodation coefficients then appear to be lower in air flows than in helium flows, when compared for a particular roughness configuration. When channel height is defined midway between the crests and troughs of the roughness elements, nondimensional pressure rise data show little or no dependence on the level of disk surface roughness and working fluid. With this arrangement, slip is largely independent of surface roughness magnitude and mostly due to rarefaction, provided the appropriate channel height is chosen to define the roughness height.

Secondary flows in turbulent boundary layers over longitudinal surface roughness

NASA Astrophysics Data System (ADS)

Hwang, Hyeon Gyu; Lee, Jae Hwa

2018-01-01

Direct numerical simulations of turbulent boundary layers over longitudinal surface roughness are performed to investigate the impact of the surface roughness on the mean flow characteristics related to counter-rotating large-scale secondary flows. By systematically changing the two parameters of the pitch (P) and width (S) for roughness elements in the ranges of 0.57 ≤P /δ ≤2.39 and 0.15 ≤S /δ ≤1.12 , where δ is the boundary layer thickness, we find that the size of the secondary flow in each case is mostly determined by the value of P - S, i.e., the valley width, over the ridge-type roughness. However, the strength of the secondary flows on the cross-stream plane relative to the flow is increased when the value of P increases or when the value of S decreases. In addition to the secondary flows, additional tertiary and quaternary flows are observed both above the roughness crest and in the valley as the values of P and S increase further. Based on an analysis using the turbulent kinetic energy transport equation, it is shown that the secondary flow over the ridge-type roughness is both driven and sustained by the anisotropy of turbulence, consistent with previous observations of a turbulent boundary layer over strip-type roughness [Anderson et al., J. Fluid Mech. 768, 316 (2015), 10.1017/jfm.2015.91]. Careful inspection of the turbulent kinetic energy budget reveals that the opposite rotational sense of the secondary flow between the ridge- and strip-type roughness elements is primarily attributed to the local imbalance of energy budget created by the strong turbulent transport term over the ridge-type roughness. The active transport of the kinetic energy over the ridge-type roughness is closely associated with the upward deflection of spanwise motions in the valley, mostly due to the roughness edge.

Numerical investigation of roughness effects in aircraft icing calculations

NASA Astrophysics Data System (ADS)

Matheis, Brian Daniel

2008-10-01

Icing codes are playing a role of increasing significance in the design and certification of ice protected aircraft surfaces. However, in the interest of computational efficiency certain small scale physics of the icing problem are grossly approximated by the codes. One such small scale phenomena is the effect of ice roughness on the development of the surface water film and on the convective heat transfer. This study uses computational methods to study the potential effect of ice roughness on both of these small scale phenomena. First, a two-dimensional condensed layer code is used to examine the effect of roughness on surface water development. It is found that the Couette approximation within the film breaks down as the wall shear goes to zero, depending on the film thickness. Roughness elements with initial flow separation in the air induce flow separation in the water layer at steady state, causing a trapping of the film. The amount of trapping for different roughness configurations is examined. Second, a three-dimensional incompressible Navier-Stokes code is developed to examine large scale ice roughness on the leading edge. The effect on the convective heat transfer and potential effect on the surface water dynamics is examined for a number of distributed roughness parameters including Reynolds number, roughness height, streamwise extent, roughness spacing and roughness shape. In most cases the roughness field increases the net average convective heat transfer on the leading edge while narrowing surface shear lines, indicating a choking of the surface water flow. Both effects show significant variation on the scale of the ice roughness. Both the change in heat transfer as well as the potential change in surface water dynamics are presented in terms of the development of singularities in the surface shear pattern. Of particular interest is the effect of the smooth zone upstream of the roughness which shows both a relatively large increase in convective heat transfer as well as excessive choking of the surface shear lines at the upstream end of the roughness field. A summary of the heat transfer results is presented for both the averaged heat transfer as well as the maximum heat transfer over each roughness element, indicating that the roughness Reynolds number is the primary parameter which characterizes the behavior of the roughness for the problem of interest.

Boundary-layer receptivity of sound with roughness

NASA Technical Reports Server (NTRS)

Saric, William S.; Hoos, Jon A.; Radeztsky, Ronald H.

1991-01-01

An experimental study of receptivity was carried out using an acoustical disturbance in the freestream. The receptivity was enhanced by using a uniform two-dimensional roughness strip (tape). The roughness strip generated the local adjustment in the flow needed to couple the long-wavelength sound wave with the short-wavelength T-S wave. The method proved to be highly sensitive, with slight changes in the forcing frequency or in the height of the 2D roughness element having a strong effect on the amplitude of the observed T-S wave.

Time Resolved Tomographic PIV Measurements of Rough-Wall Turbulent Channel Flow

NASA Astrophysics Data System (ADS)

Miorini, Rinaldo; Zhang, Cao; Katz, Joseph

2013-11-01

Time resolved tomographic PIV is used to study flow structures in the outer region of a rough-wall turbulent boundary layer, focusing on imprints of the roughness on the outer layer. Measurements are performed in a transparent channel installed in the JHU optically index matched facility. The roughness consists of pyramids with height, k = 0.46 mm, and wavelength, λ = 3.2 mm, satisfying h/k = 55 (h = 25.4 mm is the channel half-height), k + = 64 and Re = 40000. The TPIV setup consists of four high-speed cameras operating at 3 kHz, which view the sample volume through acrylic prisms. The flow field is illuminated by an Nd:YLF laser. Following enhancement, calibration, and reconstruction, 643 voxels interrogation volumes with 0.75 overlap provide 3D velocity fields with spacing of 0.5883 mm3. Formation and transport of near-wall 3D U-shaped vortex structures, with base in front of the pyramids, and quasi-streamwise legs extending between pyramid crest lines are evident from the data. Extended streamwise regions of high wall-normal vorticity appear ``latched'' to the roughness elements close to the wall, but are transported downstream at higher elevations. Also evident are traveling streamwise low velocity streaks, which cover many roughness elements. Sponsored by NSF CBET and ONR.

Modelling NDE pulse-echo inspection of misorientated planar rough defects using an elastic finite element method

NASA Astrophysics Data System (ADS)

Pettit, J. R.; Walker, A. E.; Lowe, M. J. S.

2015-03-01

Pulse-echo ultrasonic NDE examination of large pressure vessel forgings is a design and construction code requirement in the power generation industry. Such inspections aim to size and characterise potential defects that may have formed during the forging process. Typically these defects have a range of orientations and surface roughnesses which can greatly affect ultrasonic wave scattering behaviour. Ultrasonic modelling techniques can provide insight into defect response and therefore aid in characterisation. However, analytical approaches to solving these scattering problems can become inaccurate, especially when applied to increasingly complex defect geometries. To overcome these limitations a elastic Finite Element (FE) method has been developed to simulate pulse-echo inspections of embedded planar defects. The FE model comprises a significantly reduced spatial domain allowing for a Monte-Carlo based approach to consider multiple realisations of defect orientation and surface roughness. The results confirm that defects aligned perpendicular to the path of beam propagation attenuate ultrasonic signals according to the level of surface roughness. However, for defects orientated away from this plane, surface roughness can increase the magnitude of the scattered component propagating back along the path of the incident beam. This study therefore highlights instances where defect roughness increases the magnitude of ultrasonic scattered signals, as opposed to attenuation which is more often assumed.

Characteristics of surface roughness associated with leading edge ice accretion

NASA Technical Reports Server (NTRS)

Shin, Jaiwon

1994-01-01

Detailed size measurements of surface roughness associated with leading edge ice accretions are presented to provide information on characteristics of roughness and trends of roughness development with various icing parameters. Data was obtained from icing tests conducted in the Icing Research Tunnel (IRT) at NASA Lewis Research Center (LeRC) using a NACA 0012 airfoil. Measurements include diameters, heights, and spacing of roughness elements along with chordwise icing limits. Results confirm the existence of smooth and rough ice zones and that the boundary between the two zones (surface roughness transition region) moves upstream towards stagnation region with time. The height of roughness grows as the air temperature and the liquid water content increase, however, the airspeed has little effect on the roughness height. Results also show that the roughness in the surface roughness transition region grows during a very early stage of accretion but reaches a critical height and then remains fairly constant. Results also indicate that a uniformly distributed roughness model is only valid at a very initial stage of the ice accretion process.

Analysis of the coherent and turbulent stresses of a numerically simulated rough wall pipe

NASA Astrophysics Data System (ADS)

Chan, L.; MacDonald, M.; Chung, D.; Hutchins, N.; Ooi, A.

2017-04-01

A turbulent rough wall flow in a pipe is simulated using direct numerical simulation (DNS) where the roughness elements consist of explicitly gridded three-dimensional sinusoids. Two groups of simulations were conducted where the roughness semi-amplitude h+ and the roughness wavelength λ+ are systematically varied. The triple decomposition is applied to the velocity to separate the coherent and turbulent components. The coherent or dispersive component arises due to the roughness and depends on the topological features of the surface. The turbulent stress on the other hand, scales with the friction Reynolds number. For the case with the largest roughness wavelength, large secondary flows are observed which are similar to that of duct flows. The occurrence of these large secondary flows is due to the spanwise heterogeneity of the roughness which has a spacing approximately equal to the boundary layer thickness δ.

Universal emulsion stabilization from the arrested adsorption of rough particles at liquid-liquid interfaces

PubMed Central

Zanini, Michele; Marschelke, Claudia; Anachkov, Svetoslav E.; Marini, Emanuele; Synytska, Alla; Isa, Lucio

2017-01-01

Surface heterogeneities, including roughness, significantly affect the adsorption, motion and interactions of particles at fluid interfaces. However, a systematic experimental study, linking surface roughness to particle wettability at a microscopic level, is currently missing. Here we synthesize a library of all-silica microparticles with uniform surface chemistry, but tuneable surface roughness and study their spontaneous adsorption at oil–water interfaces. We demonstrate that surface roughness strongly pins the particles' contact lines and arrests their adsorption in long-lived metastable positions, and we directly measure the roughness-induced interface deformations around isolated particles. Pinning imparts tremendous contact angle hysteresis, which can practically invert the particle wettability for sufficient roughness, irrespective of their chemical nature. As a unique consequence, the same rough particles stabilize both water-in-oil and oil-in-water emulsions depending on the phase they are initially dispersed in. These results both shed light on fundamental phenomena concerning particle adsorption at fluid interfaces and indicate future design rules for particle-based emulsifiers. PMID:28589932

Universal emulsion stabilization from the arrested adsorption of rough particles at liquid-liquid interfaces

NASA Astrophysics Data System (ADS)

Zanini, Michele; Marschelke, Claudia; Anachkov, Svetoslav E.; Marini, Emanuele; Synytska, Alla; Isa, Lucio

2017-06-01

Surface heterogeneities, including roughness, significantly affect the adsorption, motion and interactions of particles at fluid interfaces. However, a systematic experimental study, linking surface roughness to particle wettability at a microscopic level, is currently missing. Here we synthesize a library of all-silica microparticles with uniform surface chemistry, but tuneable surface roughness and study their spontaneous adsorption at oil-water interfaces. We demonstrate that surface roughness strongly pins the particles' contact lines and arrests their adsorption in long-lived metastable positions, and we directly measure the roughness-induced interface deformations around isolated particles. Pinning imparts tremendous contact angle hysteresis, which can practically invert the particle wettability for sufficient roughness, irrespective of their chemical nature. As a unique consequence, the same rough particles stabilize both water-in-oil and oil-in-water emulsions depending on the phase they are initially dispersed in. These results both shed light on fundamental phenomena concerning particle adsorption at fluid interfaces and indicate future design rules for particle-based emulsifiers.

Computational Study of Laminar Flow Control on a Subsonic Swept Wing Using Discrete Roughness Elements

NASA Technical Reports Server (NTRS)

Li, Fei; Choudhari, Meelan M.; Chang, Chau-Lyan; Streett, Craig L.; Carpenter, Mark H.

2011-01-01

A combination of parabolized stability equations and secondary instability theory has been applied to a low-speed swept airfoil model with a chord Reynolds number of 7.15 million, with the goals of (i) evaluating this methodology in the context of transition prediction for a known configuration for which roughness based crossflow transition control has been demonstrated under flight conditions and (ii) of analyzing the mechanism of transition delay via the introduction of discrete roughness elements (DRE). Roughness based transition control involves controlled seeding of suitable, subdominant crossflow modes, so as to weaken the growth of naturally occurring, linearly more unstable crossflow modes. Therefore, a synthesis of receptivity, linear and nonlinear growth of stationary crossflow disturbances, and the ensuing development of high frequency secondary instabilities is desirable to understand the experimentally observed transition behavior. With further validation, such higher fidelity prediction methodology could be utilized to assess the potential for crossflow transition control at even higher Reynolds numbers, where experimental data is currently unavailable.

Application of a roughness-length representation to parameterize energy loss in 3-D numerical simulations of large rivers

NASA Astrophysics Data System (ADS)

Sandbach, S. D.; Lane, S. N.; Hardy, R. J.; Amsler, M. L.; Ashworth, P. J.; Best, J. L.; Nicholas, A. P.; Orfeo, O.; Parsons, D. R.; Reesink, A. J. H.; Szupiany, R. N.

2012-12-01

Recent technological advances in remote sensing have enabled investigation of the morphodynamics and hydrodynamics of large rivers. However, measuring topography and flow in these very large rivers is time consuming and thus often constrains the spatial resolution and reach-length scales that can be monitored. Similar constraints exist for computational fluid dynamics (CFD) studies of large rivers, requiring maximization of mesh- or grid-cell dimensions and implying a reduction in the representation of bedform-roughness elements that are of the order of a model grid cell or less, even if they are represented in available topographic data. These "subgrid" elements must be parameterized, and this paper applies and considers the impact of roughness-length treatments that include the effect of bed roughness due to "unmeasured" topography. CFD predictions were found to be sensitive to the roughness-length specification. Model optimization was based on acoustic Doppler current profiler measurements and estimates of the water surface slope for a variety of roughness lengths. This proved difficult as the metrics used to assess optimal model performance diverged due to the effects of large bedforms that are not well parameterized in roughness-length treatments. However, the general spatial flow patterns are effectively predicted by the model. Changes in roughness length were shown to have a major impact upon flow routing at the channel scale. The results also indicate an absence of secondary flow circulation cells in the reached studied, and suggest simpler two-dimensional models may have great utility in the investigation of flow within large rivers.

Simulation of leakage through mechanical sealing device

NASA Astrophysics Data System (ADS)

Tikhomorov, V. P.; Gorlenko, O. A.; Izmerov, M. A.

2018-03-01

The procedure of mathematical modeling of leakage through the mechanical seal taking into account waviness and roughness is considered. The percolation process is represented as the sum of leakages through a gap between wavy surfaces and percolation through gaps formed by fractal roughness, i.e. the total leakage is determined by the slot model and filtration leakage. Dependences of leaks on the contact pressure of corrugated and rough surfaces of the mechanical seal elements are presented.

Instability of a Supersonic Boundary-Layer with Localized Roughness

NASA Technical Reports Server (NTRS)

Marxen, Olaf; Iaccarino, Gianluca; Shaqfeh, Eric S. G.

2010-01-01

A localized 3-D roughness causes boundary-layer separation and (weak) shocks. Most importantly, streamwise vortices occur which induce streamwise (low U, high T) streaks. Immersed boundary method (volume force) suitable to represent roughness element in DNS. Favorable comparison between bi-global stability theory and DNS for a "y-mode" Outlook: Understand the flow physics (investigate "z-modes" in DNS through sinuous spanwise forcing, study origin of the beat in DNS).

Non-linear boundary-layer receptivity due to distributed surface roughness

NASA Technical Reports Server (NTRS)

Amer, Tahani Reffet

1995-01-01

The process by which a laminar boundary layer internalizes the external disturbances in the form of instability waves is known as boundary-layer receptivity. The objective of the present research was to determine the effect of acoustic excitation on boundary-layer receptivity for a flat plate with distributed variable-amplitude surface roughness through measurements with a hot-wire probe. Tollmien-Schlichting mode shapes due to surface roughness receptivity have also been determined, analyzed, and shown to be in agreement with theory and other experimental work. It has been shown that there is a linear relationship between the surface roughness and receptivity for certain roughness configurations with constant roughness wavelength. In addition, strong non-linear receptivity effects exist for certain surface roughness configurations over a band where the surface roughness and T-S wavelength are matched. The results from the present experiment follow the trends predicted by theory and other experimental work for linear receptivity. In addition, the results show the existence of non-linear receptivity effects for certain combinations of surface roughness elements.

Biological half-life of gaseous elemental iodine deposited onto rice grains

DOE Office of Scientific and Technical Information (OSTI.GOV)

Uchida, S.; Muramatsu, Y.; Sumiya, M.

In order to obtain the biological half-life (Tb) of iodine deposited on rough rice grains, rice plants of four different growing stages--heading, milky, dough, and yellow ripe--were exposed to elemental gaseous iodine. After the exposure, the rough rice samples were collected at different intervals and analyzed for iodine to estimate the value of Tb. The average value of Tb obtained by the experiments at the dough and yellow ripe stages was about 200 d. This value is considerably larger than those for pasture grass and leafy vegetables.

Leo P: How Many Metals Can a Very Low Mass, Isolated Galaxy Retain?

NASA Astrophysics Data System (ADS)

McQuinn, Kristen B. W.; Skillman, Evan D.; Dolphin, Andrew; Cannon, John M.; Salzer, John J.; Rhode, Katherine L.; Adams, Elizabeth A. K.; Berg, Danielle; Giovanelli, Riccardo; Haynes, Martha P.

2015-12-01

Leo P is a gas-rich dwarf galaxy with an extremely low gas-phase oxygen abundance (3% solar). The isolated nature of Leo P enables a quantitative measurement of metals lost solely due to star formation feedback. We present an inventory of the oxygen atoms in Leo P based on the gas-phase oxygen abundance measurement, the star formation history (SFH), and the chemical enrichment evolution derived from resolved stellar populations. The SFH also provides the total amount of oxygen produced. Overall, Leo P has retained 5% of its oxygen; 25% of the retained oxygen is in the stars while 75% is in the gas phase. This is considerably lower than the 20%-25% calculated for massive galaxies, supporting the trend for less efficient metal retention for lower-mass galaxies. The retention fraction is higher than that calculated for other alpha elements (Mg, Si, Ca) in dSph Milky Way satellites of similar stellar mass and metallicity. Accounting only for the oxygen retained in stars, our results are consistent with those derived for the alpha elements in dSph galaxies. Thus, under the assumption that the dSph galaxies lost the bulk of their gas mass through an environmental process such as tidal stripping, the estimates of retained metal fractions represent underestimates by roughly a factor of four. Because of its isolation, Leo P provides an important datum for the fraction of metals lost as a function of galaxy mass due to star formation. Based on observations made with the NASA/ESA Hubble Space Telescope, obtained from the Data Archive at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5-26555.

Effect of Blade Roughness on Transition and Wind Turbine Performance.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ehrmann, Robert S.; White, E. B.

The real-world effect of accumulated surface roughness on wind-turbine power production is not well understood. To isolate specific blade roughness features and test their effect, field measurements of turbine-blade roughness were made and simulated on a NACA 633-418 airfoil in a wind tunnel. Insect roughness, paint chips, and erosion were characterized then manufactured. In the tests, these roughness configurations were recreated as distributed roughness, a forward-facing step, and an eroded leading edge. Distributed roughness was tested in three heights and five densities. Chord Reynolds number was varied between 0:8 to 4:8 × 10 6. Measurements included lift, drag, pitching moment,more » and boundary-layer transition location. Results indicate minimal effect from paint-chip roughness. As distributed roughness height and density increase, the lift-curve slope, maximum lift, and lift-to-drag ratio decrease. As Reynolds number increases, natural transition is replaced by bypass transition. The critical roughness Reynolds number varies between 178 to 318, within the historical range. At a chord Reynolds number of 3:2 × 10 6, the maximum lift-to-drag ratio decreases 40% for 140 μm roughness, corresponding to a 2.3% loss in annual energy production. Simulated performance loss compares well to measured performance loss of an in-service wind turbine.« less

Radar-aeolian roughness project

NASA Technical Reports Server (NTRS)

Greeley, Ronald; Dobrovolskis, A.; Gaddis, L.; Iversen, J. D.; Lancaster, N.; Leach, Rodman N.; Rasnussen, K.; Saunders, S.; Vanzyl, J.; Wall, S.

1991-01-01

The objective is to establish an empirical relationship between measurements of radar, aeolian, and surface roughness on a variety of natural surfaces and to understand the underlying physical causes. This relationship will form the basis for developing a predictive equation to derive aeolian roughness from radar backscatter. Results are given from investigations carried out in 1989 on the principal elements of the project, with separate sections on field studies, radar data analysis, laboratory simulations, and development of theory for planetary applications.

Modelling NDE pulse-echo inspection of misorientated planar rough defects using an elastic finite element method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pettit, J. R.; Lowe, M. J. S.; Walker, A. E.

2015-03-31

Pulse-echo ultrasonic NDE examination of large pressure vessel forgings is a design and construction code requirement in the power generation industry. Such inspections aim to size and characterise potential defects that may have formed during the forging process. Typically these defects have a range of orientations and surface roughnesses which can greatly affect ultrasonic wave scattering behaviour. Ultrasonic modelling techniques can provide insight into defect response and therefore aid in characterisation. However, analytical approaches to solving these scattering problems can become inaccurate, especially when applied to increasingly complex defect geometries. To overcome these limitations a elastic Finite Element (FE) methodmore » has been developed to simulate pulse-echo inspections of embedded planar defects. The FE model comprises a significantly reduced spatial domain allowing for a Monte-Carlo based approach to consider multiple realisations of defect orientation and surface roughness. The results confirm that defects aligned perpendicular to the path of beam propagation attenuate ultrasonic signals according to the level of surface roughness. However, for defects orientated away from this plane, surface roughness can increase the magnitude of the scattered component propagating back along the path of the incident beam. This study therefore highlights instances where defect roughness increases the magnitude of ultrasonic scattered signals, as opposed to attenuation which is more often assumed.« less

Mixed convection of nanofluids in a lid-driven rough cavity

NASA Astrophysics Data System (ADS)

Guo, Zhimeng; Wang, Jinyu; Mozumder, Aloke K.; Das, Prodip K.

2017-06-01

Mixed convection heat transfer and fluid flow of air, water or oil in enclosures have been studied extensively using experimental and numerical means for many years due to their ever-increasing applications in many engineering fields. In comparison, little effort has been given to the problem of mixed convection of nanofluids in spite of several applications in solar collectors, electronic cooling, lubrication technologies, food processing, and nuclear reactors. Mixed convection of nanofluids is a challenging problem due to the complex interactions among inertia, viscous, and buoyancy forces. In this study, mixed convection of nanofluids in a lid-driven square cavity with sinusoidal roughness elements at the bottom is studied numerically using the Navier-Stokes equations with the Boussinesq approximation. The numerical model is developed using commercial finite volume software ANSYS-FLUENT for Al2O3-water and CuO-water nanofluids inside a square cavity with various roughness elements. The effects of number and amplitude of roughness elements on the heat transfer and fluid flow are analysed for various volume concentrations of Al2O3 and CuO nanoparticles. The flow fields, temperature fields, and heat transfer rates are examined for different values of Rayleigh and Reynolds numbers. The outcome of this study provides some important insight into the heat transfer behaviour of Al2O3-water and CuO-water nanofluids inside a lid-driven rough cavity. This knowledge can be further used in developing novel geometries with enhanced and controlled heat transfer for solar collectors, electronic cooling, and food processing industries.

Application of silver films with different roughness parameter for septic human serum albumin detection by Surface Enhanced Raman Spectroscopy

NASA Astrophysics Data System (ADS)

Zyubin, A. Y.; Konstantinova, E. I.; Matveeva, K. I.; Slezhkin, V. A.; Samusev, I. G.; Demin, M. V.; Bryukhanov, V. V.

2018-01-01

In this paper, the rough silver films parameters investigation, used as media for surface enhancement Raman spectroscopy for health and septic human serum albumin (HSA) study results have been presented. The detection of small concentrations of HSA isolated from blood serum and it main vibrational groups identification has been done.

Influence of wall roughness and thermal coductivity on turbulent natural convection

NASA Astrophysics Data System (ADS)

Orlandi, Paolo; Pirozzoli, Sergio; Bernardini, Matteo

2015-11-01

We study turbulent natural convection in enclosures with conjugate heat transfer. The simplest way to increase the heat transfer in this flow is through rough surfaces. In numerical simulations often constant temperatures are assigned on the walls, but this is an unrealistic condition in laboratory experiments. Therefore, in the DNS, to be of help to experimentalists, it is necessary to solve the heat conduction in the solid walls together with the turbulent flow between the hot and the cold walls. Here the cold wall, 0 . 5 h tick is smooth, and the hot wall has 2D and 3D rough elements of thickness 0 . 2 h above a solid layer 0 . 3 h tick. The simulation is performed in a bi-periodic domain 4 h wide. The Rayleigh number varies from 106 to 108. Two values of the thermal conductivity, one corresponding to copper and the other ten times higher were assumed. It has been found that the Nusselt number behaves as Nu = αRaγ , with α increasing with the solid conductivity and depending of the roughness shape. 3D elements produce a heat transfer greater than 2D elements. An imprinting of the flow structures on the thermal field inside the walls is observed. The one-dimensional spectra at the center, one decade wide, agree with those of forced isotropic turbulence.

The Effect of Volumetric Porosity on Roughness Element Drag

NASA Astrophysics Data System (ADS)

Gillies, John; Nickling, William; Nikolich, George; Etyemezian, Vicken

2016-04-01

Much attention has been given to understanding how the porosity of two dimensional structures affects the drag force exerted by boundary-layer flow on these flow obstructions. Porous structures such as wind breaks and fences are typically used to control the sedimentation of sand and snow particles or create micro-habitats in their lee. Vegetation in drylands also exerts control on sediment transport by wind due to aerodynamic effects and interaction with particles in transport. Recent research has also demonstrated that large spatial arrays of solid three dimensional roughness elements can be used to reduce sand transport to specified targets for control of wind erosion through the effect of drag partitioning and interaction of the moving sand with the large (>0.3 m high) roughness elements, but porous elements may improve the effectiveness of this approach. A thorough understanding of the role porosity plays in affecting the drag force on three-dimensional forms is lacking. To provide basic understanding of the relationship between the porosity of roughness elements and the force of drag exerted on them by fluid flow, we undertook a wind tunnel study that systematically altered the porosity of roughness elements of defined geometry (cubes, rectangular cylinders, and round cylinders) and measured the associated change in the drag force on the elements under similar Reynolds number conditions. The elements tested were of four basic forms: 1) same sized cubes with tubes of known diameter milled through them creating three volumetric porosity values and increasing connectivity between the tubes, 2) cubes and rectangular cylinders constructed of brass screen that nested within each other, and 3) round cylinders constructed of brass screen that nested within each other. The two-dimensional porosity, defined as the ratio of total surface area of the empty space to the solid surface area of the side of the element presented to the fluid flow was conserved at 0.519 for the cubes and 0.525 for the mesh forms. Results from the study indicate that as volumetric porosity increases, the force of drag on an element increases although the 2-dimensional porosity remains unchanged for the case of the cube forms. The mesh forms show a similar result that with increasing number of internal forms present, drag increases, but the drag curves are different, suggesting the kind of porosity has an effect on drag. An important scaling parameter that controls drag on the cubes is the permeability (K) of the element, which is a function of the diameter of the tubes and the porosity. K seems to be of lesser importance for controlling drag on the mesh forms. We hypothesize that the drag force data do not universally collapse as a function of permeability due to Reynolds number dependency on flow conditions within the elements that can be laminar, transitional, or turbulent even though flow exterior to the forms is fully turbulent. For the mesh forms, the greatest effect on drag occurs with the addition of the first internal form with subsequent additions showing very little additional effect.

Smoothed Two-Dimensional Edges for Laminar Flow

NASA Technical Reports Server (NTRS)

Holmes, B. J.; Liu, C. H.; Martin, G. L.; Domack, C. S.; Obara, C. J.; Hassan, A.; Gunzburger, M. D.; Nicolaides, R. A.

1986-01-01

New concept allows passive method for installing flaps, slats, iceprotection equipment, and other leading-edge devices on natural-laminar-flow (NLF) wings without causing loss of laminar flow. Two-dimensional roughness elements in laminar boundary layers strategically shaped to increase critical (allowable) height of roughness. Facilitates installation of leading-edge devices by practical manufacturing methods.

Interactions between the Isolated-Interactive Elements Effect and Levels of Learner Expertise: Experimental Evidence from an Accountancy Class

ERIC Educational Resources Information Center

Blayney, Paul; Kalyuga, Slava; Sweller, John

2010-01-01

This study investigated interactions between the isolated-interactive elements effect and levels of learner expertise with first year undergraduate university accounting students. The isolated-interactive elements effect occurs when learning is facilitated by initially presenting elements of information sequentially in an isolated form rather than…

Turbulent Flow Over Large Roughness Elements: Effect of Frontal and Plan Solidity on Turbulence Statistics and Structure

NASA Astrophysics Data System (ADS)

Placidi, M.; Ganapathisubramani, B.

2018-04-01

Wind-tunnel experiments were carried out on fully-rough boundary layers with large roughness (δ /h ≈ 10, where h is the height of the roughness elements and δ is the boundary-layer thickness). Twelve different surface conditions were created by using LEGO™ bricks of uniform height. Six cases are tested for a fixed plan solidity (λ _P) with variations in frontal density (λ _F), while the other six cases have varying λ _P for fixed λ _F. Particle image velocimetry and floating-element drag-balance measurements were performed. The current results complement those contained in Placidi and Ganapathisubramani (J Fluid Mech 782:541-566, 2015), extending the previous analysis to the turbulence statistics and spatial structure. Results indicate that mean velocity profiles in defect form agree with Townsend's similarity hypothesis with varying λ _F, however, the agreement is worse for cases with varying λ _P. The streamwise and wall-normal turbulent stresses, as well as the Reynolds shear stresses, show a lack of similarity across most examined cases. This suggests that the critical height of the roughness for which outer-layer similarity holds depends not only on the height of the roughness, but also on the local wall morphology. A new criterion based on shelter solidity, defined as the sheltered plan area per unit wall-parallel area, which is similar to the `effective shelter area' in Raupach and Shaw (Boundary-Layer Meteorol 22:79-90, 1982), is found to capture the departure of the turbulence statistics from outer-layer similarity. Despite this lack of similarity reported in the turbulence statistics, proper orthogonal decomposition analysis, as well as two-point spatial correlations, show that some form of universal flow structure is present, as all cases exhibit virtually identical proper orthogonal decomposition mode shapes and correlation fields. Finally, reduced models based on proper orthogonal decomposition reveal that the small scales of the turbulence play a significant role in assessing outer-layer similarity.

Form drag in rivers due to small-scale natural topographic features: 2. Irregular sequences

USGS Publications Warehouse

Kean, J.W.; Smith, J.D.

2006-01-01

The size, shape, and spacing of small-scale topographic features found on the boundaries of natural streams, rivers, and floodplains can be quite variable. Consequently, a procedure for determining the form drag on irregular sequences of different-sized topographic features is essential for calculating near-boundary flows and sediment transport. A method for carrying out such calculations is developed in this paper. This method builds on the work of Kean and Smith (2006), which describes the flow field for the simpler case of a regular sequence of identical topographic features. Both approaches model topographic features as two-dimensional elements with Gaussian-shaped cross sections defined in terms of three parameters. Field measurements of bank topography are used to show that (1) the magnitude of these shape parameters can vary greatly between adjacent topographic features and (2) the variability of these shape parameters follows a lognormal distribution. Simulations using an irregular set of topographic roughness elements show that the drag on an individual element is primarily controlled by the size and shape of the feature immediately upstream and that the spatial average of the boundary shear stress over a large set of randomly ordered elements is relatively insensitive to the sequence of the elements. In addition, a method to transform the topography of irregular surfaces into an equivalently rough surface of regularly spaced, identical topographic elements also is given. The methods described in this paper can be used to improve predictions of flow resistance in rivers as well as quantify bank roughness.

Dynamic mortar finite element method for modeling of shear rupture on frictional rough surfaces

NASA Astrophysics Data System (ADS)

Tal, Yuval; Hager, Bradford H.

2017-09-01

This paper presents a mortar-based finite element formulation for modeling the dynamics of shear rupture on rough interfaces governed by slip-weakening and rate and state (RS) friction laws, focusing on the dynamics of earthquakes. The method utilizes the dual Lagrange multipliers and the primal-dual active set strategy concepts, together with a consistent discretization and linearization of the contact forces and constraints, and the friction laws to obtain a semi-smooth Newton method. The discretization of the RS friction law involves a procedure to condense out the state variables, thus eliminating the addition of another set of unknowns into the system. Several numerical examples of shear rupture on frictional rough interfaces demonstrate the efficiency of the method and examine the effects of the different time discretization schemes on the convergence, energy conservation, and the time evolution of shear traction and slip rate.

Full Wave Analysis of RF Signal Attenuation in a Lossy Rough Surface Cave using a High Order Time Domain Vector Finite Element Method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pingenot, J; Rieben, R; White, D

2005-10-31

We present a computational study of signal propagation and attenuation of a 200 MHz planar loop antenna in a cave environment. The cave is modeled as a straight and lossy random rough wall. To simulate a broad frequency band, the full wave Maxwell equations are solved directly in the time domain via a high order vector finite element discretization using the massively parallel CEM code EMSolve. The numerical technique is first verified against theoretical results for a planar loop antenna in a smooth lossy cave. The simulation is then performed for a series of random rough surface meshes in ordermore » to generate statistical data for the propagation and attenuation properties of the antenna in a cave environment. Results for the mean and variance of the power spectral density of the electric field are presented and discussed.« less

Smoothing of Fault Slip Surfaces by Scale Invariant Wear

NASA Astrophysics Data System (ADS)

Dascher-Cousineau, K.; Kirkpatrick, J. D.

2017-12-01

Fault slip surface roughness plays a determining role in the overall strength, friction, and dynamic behavior of fault systems. Previous wear models and field observations suggest that roughness decreases with increasing displacement. However, measurements have yet to isolate the effect of displacement from other possible controls, such as lithology or tectonic setting. In an effort to understand the effect of displacement, we present comprehensive qualitative and quantitative description of the evolution of fault slip surfaces in and around the San-Rafael Desert, S.E. Utah, United States. In the study area, faults accommodated regional extension at shallow (1 to 3 km) depth and are hosted in the massive, well-sorted, high-porosity Navajo and Entrada sandstones. Existing displacement profiles along with tight displacement controls readily measureable in the field, combined with uniform lithology and tectonic history, allowed us to isolate for the effect of displacement during the embryonic stages of faulting (0 to 60 m in displacement). Our field observations indicate a clear compositional and morphological progression from isolated joints or deformation bands towards smooth, continuous, and mirror-like fault slip surfaces with increasing displacement. We scanned pristine slip surfaces with a white light interferometer, a laser scanner, and a ground-based LiDAR. We produce and analyses more than 120 individual scans of fault slip surfaces. Results for the surfaces with the best displacement constraints indicate that roughness as defined by the power spectral density at any given length scale decreases with displacement according to a power law with an exponent of -1. Roughness measurements associated with only maximum constraints on displacements corroborate this result. Moreover, maximum roughness for any given fault is bounded by a primordial roughness corresponding to that of joint surfaces and deformation band edges. Building upon these results, we propose a multi-scale wear model to explain the evolution of faults with displacement. We suggest that together, asperity failure as a scale invariant process, and the stochastic strength of host rocks are consistent with qualitative and quantitative observational constraints made in this study.

Static and sliding contact of rough surfaces: Effect of asperity-scale properties and long-range elastic interactions

NASA Astrophysics Data System (ADS)

Hulikal, Srivatsan; Lapusta, Nadia; Bhattacharya, Kaushik

2018-07-01

Friction in static and sliding contact of rough surfaces is important in numerous physical phenomena. We seek to understand macroscopically observed static and sliding contact behavior as the collective response of a large number of microscopic asperities. To that end, we build on Hulikal et al. (2015) and develop an efficient numerical framework that can be used to investigate how the macroscopic response of multiple frictional contacts depends on long-range elastic interactions, different constitutive assumptions about the deforming contacts and their local shear resistance, and surface roughness. We approximate the contact between two rough surfaces as that between a regular array of discrete deformable elements attached to a elastic block and a rigid rough surface. The deformable elements are viscoelastic or elasto/viscoplastic with a range of relaxation times, and the elastic interaction between contacts is long-range. We find that the model reproduces the main macroscopic features of evolution of contact and friction for a range of constitutive models of the elements, suggesting that macroscopic frictional response is robust with respect to the microscopic behavior. Viscoelasticity/viscoplasticity contributes to the increase of friction with contact time and leads to a subtle history dependence. Interestingly, long-range elastic interactions only change the results quantitatively compared to the meanfield response. The developed numerical framework can be used to study how specific observed macroscopic behavior depends on the microscale assumptions. For example, we find that sustained increase in the static friction coefficient during long hold times suggests viscoelastic response of the underlying material with multiple relaxation time scales. We also find that the experimentally observed proportionality of the direct effect in velocity jump experiments to the logarithm of the velocity jump points to a complex material-dependent shear resistance at the microscale.

Direct Numerical Simulation of Flow Over Passive Geometric Disturbances

NASA Astrophysics Data System (ADS)

Vizard, Alexander

It is well understood that delaying flow separation on a bluff body allows significant drag reduction, which is attractive in many applications. With this in mind, many separation control mechanisms, both active and passive, have been developed and tested to optimize the effects of this phenomenon. Although this idea is generally accepted, the physical occurrences in the near-wall region during transition that lead to separation delay are not well understood. The current study evaluates the impact of both spherical dimples, and sandgrain style roughness on downstream flow by performing direct numerical simulations over such geometries on a zero pressure gradient flat plate. It is shown that although dimples and random roughness of similar characteristic length scales exhibit similar boundary layer characteristics, dimples are more successful in developing high momentum in the vicinity of the wall. Additionally it is shown that increasing the relative size of the rough elements does not increase the near-wall momentum, and is undesirable in controlling separation. Finally, it is shown that the impact of roughness elements on the flow is more immediate, and that, for the case of one row of dimples and an equivalent area of roughness, the roughness patch is more successful in transitioning the near-wall region to a non-laminar state. It can be concluded from variation in the span of the flowfield for a single row of dimples that the size and orientation of the disturbance region is significant to the results.

Roughness Based Crossflow Transition Control for a Swept Airfoil Design Relevant to Subsonic Transports

NASA Technical Reports Server (NTRS)

Li, Fei; Choudhari, Meelan M.; Carpenter, Mark H.; Malik, Mujeeb R.; Eppink, Jenna; Chang, Chau-Lyan; Streett, Craig L.

2010-01-01

A high fidelity transition prediction methodology has been applied to a swept airfoil design at a Mach number of 0.75 and chord Reynolds number of approximately 17 million, with the dual goal of an assessment of the design for the implementation and testing of roughness based crossflow transition control and continued maturation of such methodology in the context of realistic aerodynamic configurations. Roughness based transition control involves controlled seeding of suitable, subdominant crossflow modes in order to weaken the growth of naturally occurring, linearly more unstable instability modes via a nonlinear modification of the mean boundary layer profiles. Therefore, a synthesis of receptivity, linear and nonlinear growth of crossflow disturbances, and high-frequency secondary instabilities becomes desirable to model this form of control. Because experimental data is currently unavailable for passive crossflow transition control for such high Reynolds number configurations, a holistic computational approach is used to assess the feasibility of roughness based control methodology. Potential challenges inherent to this control application as well as associated difficulties in modeling this form of control in a computational setting are highlighted. At high Reynolds numbers, a broad spectrum of stationary crossflow disturbances amplify and, while it may be possible to control a specific target mode using Discrete Roughness Elements (DREs), nonlinear interaction between the control and target modes may yield strong amplification of the difference mode that could have an adverse impact on the transition delay using spanwise periodic roughness elements.

Finite Element Simulation of Shot Peening: Prediction of Residual Stresses and Surface Roughness

NASA Astrophysics Data System (ADS)

Gariépy, Alexandre; Perron, Claude; Bocher, Philippe; Lévesque, Martin

Shot peening is a surface treatment that consists of bombarding a ductile surface with numerous small and hard particles. Each impact creates localized plastic strains that permanently stretch the surface. Since the underlying material constrains this stretching, compressive residual stresses are generated near the surface. This process is commonly used in the automotive and aerospace industries to improve fatigue life. Finite element analyses can be used to predict residual stress profiles and surface roughness created by shot peening. This study investigates further the parameters and capabilities of a random impact model by evaluating the representative volume element and the calculated stress distribution. Using an isotropic-kinematic hardening constitutive law to describe the behaviour of AA2024-T351 aluminium alloy, promising results were achieved in terms of residual stresses.

The Canopy Horizontal Array Turbulence Study (CHATS)

Treesearch

Edward G. Patton; Thomas W. Horst; Donald H. Lenschow; Peter P. Sullivan; Steven Oncley; Sean Burns; Alex Guenther; Andreas Held; Thomas Karl; Shane Mayor; Luciana Rizzo; Scott Spuler; Jielun Sun; Andrew Turnipseed; Eugene Allwine; Steven Edburg; Brian Lamb; Roni Avissar; Heidi E. Holder; Ron Calhoun; Jan Kleissl; William Massman; Kyaw Tha Paw U; Jeffrey C. Weil

2008-01-01

Turbulence in the planetary boundary layer (PBL) well above the surface has been shown to be independent of the details of the surface roughness. In this region well-quantified similarity relationships work well when characterizing turbulent fluxes (e.g., Raupach, 1979). However, in the near-surface layer which is directly influenced by roughness elements, i.e., the...

Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’

USDA-ARS?s Scientific Manuscript database

Huanglongbing (HLB) in citrus infected by Candidatus Liberibacter asiaticus (CLas) has caused tremendous losses to the citrus industry. No resistant genotypes have been identified in citrus species or close relatives. Among citrus varieties, rough lemon (Citrus jambhiri) has been considered tolerant...

Roughness effects on thermal-infrared emissivities estimated from remotely sensed images

NASA Astrophysics Data System (ADS)

Mushkin, Amit; Danilina, Iryna; Gillespie, Alan R.; Balick, Lee K.; McCabe, Matthew F.

2007-10-01

Multispectral thermal-infrared images from the Mauna Loa caldera in Hawaii, USA are examined to study the effects of surface roughness on remotely retrieved emissivities. We find up to a 3% decrease in spectral contrast in ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) 90-m/pixel emissivities due to sub-pixel surface roughness variations on the caldera floor. A similar decrease in spectral contrast of emissivities extracted from MASTER (MODIS/ASTER Airborne Simulator) ~12.5-m/pixel data can be described as a function of increasing surface roughness, which was measured remotely from ASTER 15-m/pixel stereo images. The ratio between ASTER stereo images provides a measure of sub-pixel surface-roughness variations across the scene. These independent roughness estimates complement a radiosity model designed to quantify the unresolved effects of multiple scattering and differential solar heating due to sub-pixel roughness elements and to compensate for both sub-pixel temperature dispersion and cavity radiation on TIR measurements.

Membrane fouling in a submerged membrane bioreactor: An unified approach to construct topography and to evaluate interaction energy between two randomly rough surfaces.

PubMed

Cai, Xiang; Shen, Liguo; Zhang, Meijia; Chen, Jianrong; Hong, Huachang; Lin, Hongjun

2017-11-01

Quantitatively evaluating interaction energy between two randomly rough surfaces is the prerequisite to quantitatively understand and control membrane fouling in membrane bioreactors (MBRs). In this study, a new unified approach to construct rough topographies and to quantify interaction energy between a randomly rough particle and a randomly rough membrane was proposed. It was found that, natural rough topographies of both foulants and membrane could be well constructed by a modified two-variable Weierstrass-Mandelbrot (WM) function included in fractal theory. Spatial differential relationships between two constructed surfaces were accordingly established. Thereafter, a new approach combining these relationships, surface element integration (SEI) approach and composite Simpson's rule was deduced to calculate the interaction energy between two randomly rough surfaces in a submerged MBR. The obtained results indicate the profound effects of surface morphology on interaction energy and membrane fouling. This study provided a basic approach to investigate membrane fouling and interface behaviors. Copyright © 2017 Elsevier Ltd. All rights reserved.

Estimation of effective aerodynamic roughness with altimeter measurements

NASA Technical Reports Server (NTRS)

Menenti, M.; Ritchie, J. C.

1992-01-01

A new method is presented for estimating the aerodynamic roughness length of heterogeneous land surfaces and complex landscapes using elevation measurements performed with an airborne laser altimeter and the Seasat radar altimeter. Land surface structure is characterized at increasing length scales by considering three basic landscape elements: (1) partial to complete canopies of herbaceous vegetation; (2) sparse obstacles (e.g., shrubs and trees); and (3) local relief. Measured parameters of land surface geometry are combined to obtain an effective aerodynamic roughness length which parameterizes the total atmosphere-land surface stress.

An efficient finite element method for simulation of droplet spreading on a topologically rough surface

NASA Astrophysics Data System (ADS)

Luo, Li; Wang, Xiao-Ping; Cai, Xiao-Chuan

2017-11-01

We study numerically the dynamics of a three-dimensional droplet spreading on a rough solid surface using a phase-field model consisting of the coupled Cahn-Hilliard and Navier-Stokes equations with a generalized Navier boundary condition (GNBC). An efficient finite element method on unstructured meshes is introduced to cope with the complex geometry of the solid surfaces. We extend the GNBC to surfaces with complex geometry by including its weak form along different normal and tangential directions in the finite element formulation. The semi-implicit time discretization scheme results in a decoupled system for the phase function, the velocity, and the pressure. In addition, a mass compensation algorithm is introduced to preserve the mass of the droplet. To efficiently solve the decoupled systems, we present a highly parallel solution strategy based on domain decomposition techniques. We validate the newly developed solution method through extensive numerical experiments, particularly for those phenomena that can not be achieved by two-dimensional simulations. On a surface with circular posts, we study how wettability of the rough surface depends on the geometry of the posts. The contact line motion for a droplet spreading over some periodic rough surfaces are also efficiently computed. Moreover, we study the spreading process of an impacting droplet on a microstructured surface, a qualitative agreement is achieved between the numerical and experimental results. The parallel performance suggests that the proposed solution algorithm is scalable with over 4,000 processors cores with tens of millions of unknowns.

Application of quantum dots CdZnSeS / ZnS luminescence, enhanced by plasmons of silver rough surface for detection of albumin in blood facies of infected person

NASA Astrophysics Data System (ADS)

Konstantinova, E.; Zyubin, A.; Moiseeva, E.; Matveeva, K.; Slezhkin, V.; Samusev, I.; Bryukhanov, V.

2017-12-01

The study of the luminescence of CdZnSeS / ZnS quantum dots (QDs) absorbed on the rough surface of a silver film, including the energy transfer between human serum albumin molecules, isolated from the blood plasma of healthy and infected with sepsis patients, was performed by spectral-kinetic methods.

Investigation of turbulent wedges generated by different single surface roughness elements

NASA Astrophysics Data System (ADS)

Traphan, Dominik; Meinlschmidt, Peter; Lutz, Otto; Peinke, Joachim; Gülker, Gerd

2013-11-01

It is known that small faults on rotor blades of wind turbines can cause significant power loss. In order to better understand the governing physical effects, in this experimental study, the formation of a turbulent wedge over a flat plate induced by single surface roughness elements is under investigation. The experiments are performed at different ambient pressure gradients, thus allowing conclusions about the formation of a turbulent wedge over an airfoil. With respect to typical initial faults on operating airfoils, the roughness elements are modified in both size and shape (raised or recessed). None intrusive experimental methods, such as stereoscopic PIV and LDA, enable investigations based on temporally and spatially highly resolved velocity measurements. In this way, a spectral analysis of the turbulent boundary layer is performed and differences in coherent structures within the wedge are identified. These findings are correlated with global measurements of the wedge carried out by infrared thermography. This correlation aims to enable distinguishing the cause and main properties of a turbulent wedge by the easy applicable method of infrared thermography, which is of practical relevance in the field of condition monitoring of wind turbines.

Isolation and Structure Elucidation of the Terpene "[beta]"-Thujone from Cedar Leaf Oil

ERIC Educational Resources Information Center

French, Larry G.

2011-01-01

Western red cedar leaf affords an essential oil characterized by high thujone content. Students in an advanced organic chemistry lab course isolate a single thujone diastereoisomer from commercially available cedar leaf oil. Treatment of crude oil, containing roughly 70% thujone, predominately as [alpha]-thujone (6.5:1), with ethanolic sodium…

Study on the measures of tunnels side-crossing bridge based on sheltering effects of isolation piles

NASA Astrophysics Data System (ADS)

Tang, Jian; Liu, Jun yan; Liu, Yan

2017-08-01

Based on the transit line 3, we studied the effect of the bridge piles crossed closely from the side by the shield tunnel. Using the three-dimensional finite element numerical analysis software Midas GTS/NX, we analyzed the effect of shield tunnel on pile deformation, statistics are obtained that under the condition of pile, subgrade reinforcement and ground changes. The calculation results show that in the condition of reinforcement, the new tunnel shield crossing through the pile caused longitudinal disturbance of the tunnel surrounding strata along the tunnel, where the soil over the area is within a certain range of pile and settlement deformation of surface subsidence occurs, changing the surface roughly to the shape of “V”. The maximum value appears above the shield tunnel and the value is high. In combination with engineering geology, hydrogeology and environment factors, this paper adopted isolation pile reinforcement to the pile, and the simulated results show that, pile settlement was significantly reduced under the condition of pile reinforcement. The calculation results show the rationality of the reinforcement scheme to a certain extent, which provides a theoretical basis for the similar tunnel.

The flow field around a pair of cubic roughness elements with different spacings immersed in turbulent boundary layer

NASA Astrophysics Data System (ADS)

Agarwal, Karuna; Gao, Jian; Katz, Joseph

2017-11-01

The shape, size, and spacing between roughness elements in turbulent boundary layers affect the associated drag and noise. Understanding them require data on the flow structure around these elements. Dual-view tomographic holography is used to study the 3D 3-component velocity field around a pair of cubic roughness elements immersed in a turbulent boundary layer at Reτ = 2500 . These a = 1 mm high cubes correspond to 4% of the half channel height and 90 wall units (δν = 11 μ m). Tests are performed for spanwise spacings of a, 1.5 a and 2.5 a. The sample volume is 385δν × 250δν × 190δν and the vector spacing is 5.4δν. Conversed statistics is obtained by recording 1500 realizations in volumes centered upstream, downstream and around a cube. The boundary layer separating upstream of the cube does not reattach until the wake region, resulting in formation of a vortical ``canopy'' that engulfs each cube. It is dominated by spanwise vorticity above the cube and separated region, bounded by vertical vorticity on the sides. Flow channeling in the space between cubes causes asymmetry in the vorticity distributions along the inner and outer walls. The legs of horseshoe vortices remain near the wall between cubes, but grow and expand in the wake region. Funded by NSF and ONR.

Observations on the Growth of Roughness Elements Into Icing Feathers

NASA Technical Reports Server (NTRS)

Vargas, Mario; Tsao, Jen, Ching

2007-01-01

This work presents the results of an experiment conducted in the Icing Research Tunnel at NASA Glenn Research Center to understand the process by which icing feathers are formed in the initial stages of ice accretion formation on swept wings. Close-up photographic data were taken on an aluminum NACA 0012 swept wing tip airfoil. Two types of photographic data were obtained: time sequence close-up photographic data during the run and close-up photographic data of the ice accretion at the end of each run. Icing runs were conducted for short ice accretion times from 10 to 180 sec. The time sequence close-up photographic data was used to study the process frame by frame and to create movies of how the process developed. The movies confirmed that at glaze icing conditions in the attachment line area icing feathers develop from roughness elements. The close-up photographic data at the end of each run showed that roughness elements change into a pointed shape with an upstream facet and join on the side with other elements having the same change to form ridges with pointed shape and upstream facet. The ridges develop into feathers when the upstream facet grows away to form the stem of the feather. The ridges and their growth into feathers were observed to form the initial scallop tips present in complete scallops.

Boundary-Layer Instability Measurements in a Mach-6 Quiet Tunnel

NASA Technical Reports Server (NTRS)

Berridge, Dennis C.; Ward, Christopher, A. C.; Luersen, Ryan P. K.; Chou, Amanda; Abney, Andrew D.; Schneider, Steven P.

2012-01-01

Several experiments have been performed in the Boeing/AFOSR Mach-6 Quiet Tunnel at Purdue University. A 7 degree half angle cone at 6 degree angle of attack with temperature-sensitive paint (TSP) and PCB pressure transducers was tested under quiet flow. The stationary crossflow vortices appear to break down to turbulence near the lee ray for sufficiently high Reynolds numbers. Attempts to use roughness elements to control the spacing of hot streaks on a flared cone in quiet flow did not succeed. Roughness was observed to damp the second-mode waves in areas influenced by the roughness, and wide roughness spacing allowed hot streaks to form between the roughness elements. A forward-facing cavity was used for proof-of-concept studies for a laser perturber. The lowest density at which the freestream laser perturbations could be detected was 1.07 x 10(exp -2) kilograms per cubic meter. Experiments were conducted to determine the transition characteristics of a streamwise corner flow at hypersonic velocities. Quiet flow resulted in a delayed onset of hot streak spreading. Under low Reynolds number flow hot streak spreading did not occur along the model. A new shock tube has been built at Purdue. The shock tube is designed to create weak shocks suitable for calibrating sensors, particularly PCB-132 sensors. PCB-132 measurements in another shock tube show the shock response and a linear calibration over a moderate pressure range.

Influence of foundation mass and surface roughness on dynamic response of beam on dynamic foundation subjected to the moving load

NASA Astrophysics Data System (ADS)

Tran Quoc, Tinh; Khong Trong, Toan; Luong Van, Hai

2018-04-01

In this paper, Improved Moving Element Method (IMEM) is used to analyze the dynamic response of Euler-Bernoulli beam structures on the dynamic foundation model subjected to the moving load. The effects of characteristic foundation model parameters such as Winkler stiffness, shear layer based on the Pasternak model, viscoelastic dashpot and characteristic parameter of mass on foundation. Beams are modeled by moving elements while the load is fixed. Based on the principle of the publicly virtual balancing and the theory of moving element method, the motion differential equation of the system is established and solved by means of the numerical integration based on the Newmark algorithm. The influence of mass on foundation and the roughness of the beam surface on the dynamic response of beam are examined in details.

Excitation of Crossflow Instabilities in a Swept Wing Boundary Layer

NASA Technical Reports Server (NTRS)

Carpenter, Mark H.; Choudhari, Meelan; Li, Fei; Streett, Craig L.; Chang, Chau-Lyan

2010-01-01

The problem of crossflow receptivity is considered in the context of a canonical 3D boundary layer (viz., the swept Hiemenz boundary layer) and a swept airfoil used recently in the SWIFT flight experiment performed at Texas A&M University. First, Hiemenz flow is used to analyze localized receptivity due to a spanwise periodic array of small amplitude roughness elements, with the goal of quantifying the effects of array size and location. Excitation of crossflow modes via nonlocalized but deterministic distribution of surface nonuniformity is also considered and contrasted with roughness induced acoustic excitation of Tollmien-Schlichting waves. Finally, roughness measurements on the SWIFT model are used to model the effects of random, spatially distributed roughness of sufficiently small amplitude with the eventual goal of enabling predictions of initial crossflow disturbance amplitudes as functions of surface roughness parameters.

Wave and setup dynamics on steeply-sloping reefs with large bottom roughness

NASA Astrophysics Data System (ADS)

Buckley, M. L.; Hansen, J.; Lowe, R.

2016-12-01

High-resolution observations from a wave flume were used to investigate the dynamics of wave setup over a steeply-sloping fringing reef profile with the effect of bottom roughness modeled using roughness elements scaled to mimic a coral reef. Results with roughness were compared with smooth bottom runs across sixteen offshore wave and still water level conditions. The time-averaged and depth-integrated force balance was evaluated from observations collected at seventeen locations across the flume, which was found to consist of cross-shore pressure and radiation stress gradients whose sum was balanced by mean quadratic bottom stresses. We found that when radiation stress gradients were calculated from observations of the radiation stress derived from linear wave theory, both wave setdown and setup were under predicted for the majority of wave and water level conditions tested. Inaccuracies in the predicted setdown and setup were improved by including a wave roller model, which provides a correction to the kinetic energy predicted by linear wave theory for breaking waves and produces a spatial delay in the wave forcing that was consistent with the observations. The introduction of roughness had two primary effects. First, the amount of wave energy dissipated during wave breaking was reduced due to frictional wave dissipation that occurred on the reef slope offshore of the breakpoint. Second, offshore directed mean bottom stresses were generated by the interaction of the combined wave-current velocity field with the roughness elements. These two mechanisms acted counter to one another. As a result, setup on the reef flat was comparable (7% mean difference) between corresponding rough and smooth runs. These findings are used to assess prior results from numerical modelling studies of reefs, and also to discuss the broader implications for how steep slopes and large roughness influences setup dynamics for general nearshore systems.

The James Webb Space Telescope

NASA Technical Reports Server (NTRS)

Nowak, Maria; Eichorn, William; Hill, Michael; Hylan, Jason; Marsh, James; Ohl, Raymond; Sampler, Henry; Wright, Geraldine; Crane, Allen; Herrera, Acey;

Can the Isolated-Elements Strategy Be Improved by Targeting Points of High Cognitive Load for Additional Practice?

ERIC Educational Resources Information Center

Ayres, Paul

2013-01-01

Reducing problem complexity by isolating elements has been shown to be an effective instructional strategy. Novices, in particular, benefit from learning from worked examples that contain partially interacting elements rather than worked examples that provide full interacting elements. This study investigated whether the isolating-elements…

Clinical and veterinary isolates of Salmonella enterica serovar Enteritidis defective in lipopolysaccharide O-chain polymerization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guard-Petter, J.; Parker, C.T.; Asokan, K.

1999-05-01

Twelve human and chicken isolates of Salmonella enterica serovar Enteritidis belonging to phage types 4, 8, 13a, and 23 were characterized for variability in lipopolysaccharide (LPS) composition. Isolates were differentiated into two groups, i.e., those that lacked immunoreactive O-chain, termed rough isolates, and those that had immunoreactive O-chain, termed smooth isolates. Isolates within these groups could be further differentiated by LPS compositional differences as detected by gel electrophoresis and gas liquid chromatography of samples extracted with water, which yielded significantly more LPS in comparison to phenol-chloroform extraction. The rough isolates were of two types, the O-antigen synthesis mutants and themore » O-antigen polymerization (wzy) mutants. Smooth isolates were also of two types, one producing low-molecular-weight (LMW) LPS and the other producing high-molecular-weight (HMW) LPS. To determine the genetic basis for the O-chain variability of the smooth isolates, the authors analyzed the effects of a null mutation in the O-chain length determinant gene, wzz (cld) of serovar Typhimurium. This mutation results in a loss of HMW LPS; however, the LMW LPS of this mutant was longer and more glucosylated than that from clinical isolates of serovar Enteritidis. Cluster analysis of these data and of those from two previously characterized isogenic strains of serovar Enteritidis that had different virulence attributes indicated that glucosylation of HMW LPS (via oafR function) is variable and results in two types of HMW structures, one that is highly glucosylated and one that is minimally glucosylated. These results strongly indicate that naturally occurring variability in wzy, wzz, and oafR function can be used to subtype isolates of serovar Enteritidis during epidemiological investigations.« less

Surface smoothening of the inherent roughness of micro-lenses fabricated with 2-photon lithography

NASA Astrophysics Data System (ADS)

Schift, Helmut; Kirchner, Robert; Chidambaram, Nachiappan; Altana, Mirco

2018-01-01

Two-photon polymerization by direct laser writing enables to write refractive micro-optical elements with sub-μm precision. The trajectories and layering during the direct writing process often result in roughness in the range of the writing increment, which has adverse effects for optical applications. Instead of increasing overlap between adjacent voxels, roughness in the range of 100 nm can be smoothed out by post-processing. For this a method known as TASTE was developed, which allows polishing of surfaces without changing the structural details or the overall shape. It works particularly well with thermoplastic polymers and enables sub-10 nm roughness. The optical quality was confirmed for an array with several 100 microlenses.

Automated high-speed Mueller matrix scatterometer.

PubMed

Delplancke, F

1997-08-01

A new scatterometer-polarimeter is described. It measures the angular distribution of intensity and of the complete Mueller matrix of light scattered by rough surfaces and particle suspensions. The measurement time is 1 s/scattering angle in the present configuration but can be reduced to a few milliseconds with modified electronics. The instrument uses polarization modulation and a Fourier analysis of four detected signals to obtain the 16 Mueller matrix elements. This method is particularly well suited to online, real time, industrial process control involving rough surfaces and large particle suspensions (an arithmetic roughness or particle diameter of >1 microm). Some results are given.

Surface Roughness Relief

NASA Astrophysics Data System (ADS)

Marras, L.; Fontana, R.; Gambino, M. C.; Greco, M.; Materazzi, M.; Pampaloni, E.; Pezzati, L.; Poggi, P.

The knowledge of the shape of an artwork is an important element for its study and conservation. When dealing with a stone statue, roughness measurement is a very useful contribution to document its surface conditions, to assess either changes due to restoration intervention or surface decays due to weathering agents, and to monitor its time-evolution in terms of shape variations. In this work we present the preliminary results of the statistical analysis carried out on acquired data relative to six areas of the Michelangelo's David marble statue, representative of differently degraded surfaces. Determination of the roughness and its relative characteristic wavelength is shown.

The Effect of an Isogrid on Cryogenic Propellant Behavior and Thermal Stratification

NASA Technical Reports Server (NTRS)

Oliveira, Justin; Kirk, Daniel R.; Chintalapati, Sunil; Schallhorn, Paul A.; Piquero, Jorge L.; Campbell, Mike; Chase, Sukhdeep

2007-01-01

All models for thermal stratification available in the presentation are derived using smooth, flat plate laminar and turbulent boundary layer models. This study examines the effect of isogrid (roughness elements) on the surface of internal tank walls to mimic the effects of weight-saving isogrid, which is located on the inside of many rocket propellant tanks. Computational Fluid Dynamics (CFD) is used to study the momentum and thermal boundary layer thickness for free convection flows over a wall with generic roughness elements. This presentation makes no mention of actual isogrid sizes or of any specific tank geometry. The magnitude of thermal stratification is compared for smooth and isogrid-lined walls.

Wind erosion in semiarid landscapes: Predictive models and remote sensing methods for the influence of vegetation

NASA Technical Reports Server (NTRS)

Musick, H. Brad; Truman, C. Randall; Trujillo, Steven M.

1992-01-01

Wind erosion in semi-arid regions is a significant problem for which the sheltering effect of rangeland vegetation is poorly understood. Individual plants may be considered as porous roughness elements which absorb or redistribute the wind's momentum. The saltation threshold is the minimum wind velocity at which soil movement begins. The dependence of the saltation threshold on geometrical parameters of a uniform roughness array was studied in a wind tunnel. Both solid and porous elements were used to determine relationships between canopy structure and the threshold velocity for soil transport. The development of a predictive relation for the influence of vegetation canopy structure on wind erosion of soil is discussed.

Cassini/VIMS observes rough surfaces on Titan's Punga Mare in specular reflection.

PubMed

Barnes, Jason W; Sotin, Christophe; Soderblom, Jason M; Brown, Robert H; Hayes, Alexander G; Donelan, Mark; Rodriguez, Sebastien; Mouélic, Stéphane Le; Baines, Kevin H; McCord, Thomas B

Cassini /VIMS high-phase specular observations of Titan's north pole during the T85 flyby show evidence for isolated patches of rough liquid surface within the boundaries of the sea Punga Mare. The roughness shows typical slopes of 6°±1°. These rough areas could be either wet mudflats or a wavy sea. Because of their large areal extent, patchy geographic distribution, and uniform appearance at low phase, we prefer a waves interpretation. Applying theoretical wave calculations based on Titan conditions our slope determination allows us to infer winds of 0.76±0.09 m/s and significant wave heights of [Formula: see text] cm at the time and locations of the observation. If correct, these would represent the first waves seen on Titan's seas, and also the first extraterrestrial sea-surface waves in general.

Ice Roughness in Short Duration SLD Icing Events

NASA Technical Reports Server (NTRS)

McClain, Stephen T.; Reed, Dana; Vargas, Mario; Kreeger, Richard E.; Tsao, Jen-Ching

2014-01-01

Ice accretion codes depend on models of roughness parameters to account for the enhanced heat transfer during the ice accretion process. While mitigating supercooled large droplet (SLD or Appendix O) icing is a significant concern for manufacturers seeking future vehicle certification due to the pending regulation, historical ice roughness studies have been performed using Appendix C icing clouds which exhibit mean volumetric diameters (MVD) much smaller than SLD clouds. Further, the historical studies of roughness focused on extracting parametric representations of ice roughness using multiple images of roughness elements. In this study, the ice roughness developed on a 21-in. NACA 0012 at 0deg angle of attack exposed to short duration SLD icing events was measured in the Icing Research Tunnel at the NASA Glenn Research Center. The MVD's used in the study ranged from 100 micrometer to 200 micrometers, in a 67 m/s flow, with liquid water contents of either 0.6 gm/cubic meters or 0.75 gm/cubic meters. The ice surfaces were measured using a Romer Absolute Arm laser scanning system. The roughness associated with each surface point cloud was measured using the two-dimensional self-organizing map approach developed by McClain and Kreeger (2013) resulting in statistical descriptions of the ice roughness.

Microfabricated structures with electrical isolation and interconnections

NASA Technical Reports Server (NTRS)

Clark, William A. (Inventor); Juneau, Thor N. (Inventor); Roessig, Allen W. (Inventor); Lemkin, Mark A. (Inventor)

2001-01-01

The invention is directed to a microfabricated device. The device includes a substrate that is etched to define mechanical structures at least some of which are anchored laterally to the remainder of the substrate. Electrical isolation at points where mechanical structures are attached to the substrate is provided by filled isolation trenches. Filled trenches may also be used to electrically isolate structure elements from each other at points where mechanical attachment of structure elements is desired. The performance of microelectromechanical devices is improved by 1) having a high-aspect-ratio between vertical and lateral dimensions of the mechanical elements, 2) integrating electronics on the same substrate as the mechanical elements, 3) good electrical isolation among mechanical elements and circuits except where electrical interconnection is desired.

Watershed Complexity Impacts on Rainfall-Runoff Modeling

NASA Astrophysics Data System (ADS)

Goodrich, D. C.; Grayson, R.; Willgoose, G.; Palacios-Velez, O.; Bloeschl, G.

2002-12-01

Application of distributed hydrologic watershed models fundamentally requires watershed partitioning or discretization. In addition to partitioning the watershed into modeling elements, these elements typically represent a further abstraction of the actual watershed surface and its relevant hydrologic properties. A critical issue that must be addressed by any user of these models prior to their application is definition of an acceptable level of watershed discretization or geometric model complexity. A quantitative methodology to define a level of geometric model complexity commensurate with a specified level of model performance is developed for watershed rainfall-runoff modeling. In the case where watershed contributing areas are represented by overland flow planes, equilibrium discharge storage was used to define the transition from overland to channel dominated flow response. The methodology is tested on four subcatchments which cover a range of watershed scales of over three orders of magnitude in the USDA-ARS Walnut Gulch Experimental Watershed in Southeastern Arizona. It was found that distortion of the hydraulic roughness can compensate for a lower level of discretization (fewer channels) to a point. Beyond this point, hydraulic roughness distortion cannot compensate for topographic distortion of representing the watershed by fewer elements (e.g. less complex channel network). Similarly, differences in representation of topography by different model or digital elevation model (DEM) types (e.g. Triangular Irregular Elements - TINs; contour lines; and regular grid DEMs) also result in difference in runoff routing responses that can be largely compensated for by a distortion in hydraulic roughness.

Continuity and Change; the Need for Both.

ERIC Educational Resources Information Center

Benezet, Louis T.

Eighteen administrators, organization directors, and senior professors were asked to determine what elements had remained the most unchanged during their roughly 30 years in higher education, and what elements had changed the most and would, perhaps, continue to change. (To the outsider, among many transformations related to the increasing size…

A comparison of surface water natural organic matter in raw filtered water samples, XAD, and reverse osmosis isolates.

PubMed

Maurice, Patricia A; Pullin, Michael J; Cabaniss, Stephen E; Zhou, Qunhui; Namjesnik-Dejanovic, Ksenija; Aiken, George R

2002-05-01

This research compared raw filtered waters (RFWs), XAD resin isolates (XAD-8 and XAD-4), and reverse osmosis (RO) isolates of several surface water samples from McDonalds Branch, a small freshwater fen in the New Jersey Pine Barrens (USA). RO and XAD-8 are two of the most common techniques used to isolate natural organic matter (NOM) for studies of composition and reactivity; therefore, it is important to understand how the isolates differ from bulk (unisolated) samples and from one another. Although, any comparison between the isolation methods needs to consider that XAD-8 is specifically designed to isolate the humic fraction, whereas RO concentrates a broad range of organic matter and is not specific to humics. The comparison included for all samples: weight average molecular weight (Mw), number average molecular weight (Mn), polydispersity (rho), absorbance at 280 nm normalized to moles C (epsilon280) (RFW and isolates); and for isolates only: elemental analysis, % carbon distribution by 13C NMR, and aqueous FTIR spectra. As expected, RO isolation gave higher yield of NOM than XAD-8, but also higher ash content, especially Si and S. Mw decreased in the order: RO > XAD-8 > RFW > XAD-4. The Mw differences of isolates compared with RFW may be due to selective isolation (fractionation), or possibly in the case of RO to condensation or coagulation during isolation. 13C NMR results were roughly similar for the two methods, but the XAD-8 isolate was slightly higher in 'aromatic' C and the RO isolate was slightly higher in heteroaliphatic and carbonyl C. Infrared spectra indicated a higher carboxyl content for the XAD-8 isolates and a higher ester:carboxyl ratio for the RO isolates. The spectroscopic data thus are consistent with selective isolation of more hydrophobic compounds by XAD-8, and also with potential ester hydrolysis during that process, although further study is needed to determine whether ester hydrolysis does indeed occur. Researchers choosing between XAD and RO isolation methods for NOM need to consider first the purpose of the isolation; i.e., whether humic fractionation is desirable. Beyond that, they should consider the C yield and ash content, as well as the potential for alteration of NOM by ester hydrolysis (XAD) or condensation/coagulation (RO). Furthermore, the RO and XAD methods produce different fractions or isolates so that researchers should be careful when comparing the compositions and reactivities of NOM samples isolated by these two different techniques.

A comparison of surface water natural organic matter in raw filtered water samples, XAD, and reverse osmosis isolates

USGS Publications Warehouse

Maurice, P.A.; Pullin, M.J.; Cabaniss, S.E.; Zhou, Q.; Namjesnik-Dejanovic, K.; Aiken, G.R.

2002-01-01

This research compared raw filtered waters (RFWs), XAD resin isolates (XAD-8 and XAD-4), and reverse osmosis (RO) isolates of several surface water samples from McDonalds Branch, a small freshwater fen in the New Jersey Pine Barrens (USA). RO and XAD-8 are two of the most common techniques used to isolate natural organic matter (NOM) for studies of composition and reactivity; therefore, it is important to understand how the isolates differ from bulk (unisolated) samples and from one another. Although, any comparison between the isolation methods needs to consider that XAD-8 is specifically designed to isolate the humic fraction, whereas RO concentrates a broad range of organic matter and is not specific to humics. The comparison included for all samples: weight average molecular weight (Mw), number average molecular weight (Mn), polydispersity (??), absorbance at 280nm normalized to moles C (??280) (RFW and isolates); and for isolates only: elemental analysis, % carbon distribution by 13C NMR, and aqueous FTIR spectra. As expected, RO isolation gave higher yield of NOM than XAD-8, but also higher ash content, especially Si and S. Mw decreased in the order: RO>XAD-8>RFW>XAD-4. The Mw differences of isolates compared with RFW may be due to selective isolation (fractionation), or possibly in the case of RO to condensation or coagulation during isolation. 13C NMR results were roughly similar for the two methods, but the XAD-8 isolate was slightly higher in 'aromatic' C and the RO isolate was slightly higher in heteroaliphatic and carbonyl C. Infrared spectra indicated a higher carboxyl content for the XAD-8 isolates and a higher ester:carboxyl ratio for the RO isolates. The spectroscopic data thus are consistent with selective isolation of more hydrophobic compounds by XAD-8, and also with potential ester hydrolysis during that process, although further study is needed to determine whether ester hydrolysis does indeed occur. Researchers choosing between XAD and RO isolation methods for NOM need to consider first the purpose of the isolation; i.e., whether humic fractionation is desirable. Beyond that, they should consider the C yield and ash content, as well as the potential for alteration of NOM by ester hydrolysis (XAD) or condensation/coagulation (RO). Furthermore, the RO and XAD methods produce different fractions or isolates so that researchers should be careful when comparing the compositions and reactivities of NOM samples isolated by these two different techniques. ?? 2002 Published by Elsevier Science Ltd.

Plume Dispersion over Idealized Urban-liked Roughness with Height Variation: an LES Approach

NASA Astrophysics Data System (ADS)

Wong, Colman Ching Chi; Liu, Chun-Ho

2013-04-01

Human activities (e.g. vehicular emission) are the primary pollutant sources affecting the health and living quality of stakeholders in modern compact cities. Gaussian plume dispersion model is commonly used for pollutant distribution estimate that works well over rural areas with flat terrain. However, its major parameters, dispersion coefficients, exclude the effect of surface roughness that unavoidably prone to error handling the pollutant transport in the urban boundary layer (UBL) over building roughness. Our recent large-eddy simulation (LES) has shown that urban surfaces affect significantly the pollutant dispersion over idealized, identical two-dimensional (2D) street canyons of uniform height. As an extension to our on-going effort, this study is conceived to investigate how rough urban surfaces, which are constructed by 2D street canyons of non-uniform height, modify the UBL pollutant dispersion . A series of LESs with idealized roughness elements of non-uniform heights were performed in neutral stratification. Building models with two different heights were placed alternatively in the computational domain to construct 2D street canyons in cross flows. The plume dispersion from a ground-level passive pollutant source over more realistic urban areas was then examined. Along with the existing building-height-to-street-width (aspect) ratio (AR), a new parameter, building-height variability (BHV), is used to measure the building height unevenness. Four ARs (1, 0.5, 0.25 and 0.125) and three BHVs (20%, 40% and 60%) were considered in this study. Preliminary results show that BHV greatly increases the aerodynamic roughness of the hypothetical urban surfaces for narrow street canyons. Analogous to our previous findings, the air exchange rate (ACH) of street canyons increases with increasing friction factor, implying that street-level ventilation could be improved by increasing building roughness via BHV. In addition, the parameters used in dispersion coefficient estimates are related to the friction factor in the way similar to that of uniform street canyons, i.e. they are linear functions of friction factor when the roughness is small and become insensitive to friction factor thereafter over very rough surfaces. It is thus suggested that aerodynamic resistance is the key factor affecting the air quality in urban areas. Moreover, the friction factor could be used to parameterize the dispersion coefficients over different roughness elements.

Boundary Layer Control for Hypersonic Airbreathing Vehicles

NASA Technical Reports Server (NTRS)

Berry, Scott A.; Nowak, Robert J.; Horvath, Thomas J.

2004-01-01

Active and passive methods for tripping hypersonic boundary layers have been examined in NASA Langley Research Center wind tunnels using a Hyper-X model. This investigation assessed several concepts for forcing transition, including passive discrete roughness elements and active mass addition (or blowing), in the 20-Inch Mach 6 Air and the 31-Inch Mach 10 Air Tunnels. Heat transfer distributions obtained via phosphor thermography, shock system details, and surface streamline patterns were measured on a 0.333-scale model of the Hyper-X forebody. The comparisons between the active and passive methods for boundary layer control were conducted at test conditions that nearly match the Hyper-X nominal Mach 7 flight test-point of an angle-of-attack of 2-deg and length Reynolds number of 5.6 million. For passive roughness, the primary parametric variation was a range of trip heights within the calculated boundary layer thickness for several trip concepts. The passive roughness study resulted in a swept ramp configuration, scaled to be roughly 0.6 of the calculated boundary layer thickness, being selected for the Mach 7 flight vehicle. For the active blowing study, the manifold pressure was systematically varied (while monitoring the mass flow) for each configuration to determine the jet penetration height, with schlieren, and transition movement, with the phosphor system, for comparison to the passive results. All the blowing concepts tested, which included various rows of sonic orifices (holes), two- and three-dimensional slots, and random porosity, provided transition onset near the trip location with manifold stagnation pressures on the order of 40 times the model surface static pressure, which is adequate to ensure sonic jets. The present results indicate that the jet penetration height for blowing was roughly half the height required with passive roughness elements for an equivalent amount of transition movement.

Dust Devils on Mars: Effects of Surface Roughness on Particle Threshold

NASA Technical Reports Server (NTRS)

Neakrase, Lynn D.; Greeley, Ronald; Iversen, James D.; Balme, Matthew L.; Foley, Daniel J.; Eddlemon, Eric E.

2005-01-01

Dust devils have been proposed as effective mechanisms for lofting large quantities of dust into the martian atmosphere. Previous work showed that vortices lift dust more easily than simple boundary layer winds. The aim of this study is to determine experimentally the effects of non-erodable roughness elements on vortex particle threshold through laboratory simulations of natural surfaces. Additional information is included in the original extended abstract.

Effects of surface roughness and electrokinetic heterogeneity on electroosmotic flow in microchannel

NASA Astrophysics Data System (ADS)

Masilamani, Kannan; Ganguly, Suvankar; Feichtinger, Christian; Bartuschat, Dominik; Rüde, Ulrich

2015-06-01

In this paper, a hybrid lattice-Boltzmann and finite-difference (LB-FD) model is applied to simulate the effects of three-dimensional surface roughness and electrokinetic heterogeneity on electroosmotic flow (EOF) in a microchannel. The lattice-Boltzmann (LB) method has been employed to obtain the flow field and a finite-difference (FD) method is used to solve the Poisson-Boltzmann (PB) equation for the electrostatic potential distribution. Numerical simulation of flow through a square cross-section microchannel with designed roughness is conducted and the results are critically analysed. The effects of surface heterogeneity on the electroosmotic transport are investigated for different roughness height, width, roughness interval spacing, and roughness surface potential. Numerical simulations reveal that the presence of surface roughness changes the nature of electroosmotic transport through the microchannel. It is found that the electroosmotic velocity decreases with the increase in roughness height and the velocity profile becomes asymmetric. For the same height of the roughness elements, the EOF velocity rises with the increase in roughness width. For the heterogeneously charged rough channel, the velocity profile shows a distinct deviation from the conventional plug-like flow pattern. The simulation results also indicate locally induced flow vortices which can be utilized to enhance the flow and mixing within the microchannel. The present study has important implications towards electrokinetic flow control in the microchannel, and can provide an efficient way to design a microfluidic system of practical interest.

Roughness Sensitivity Comparisons of Wind Turbine Blade Sections

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilcox, Benjamin J.; White, Edward B.; Maniaci, David Charles

One explanation for wind turbine power degradation is insect roughness. Historical studies on insect-induced power degradation have used simulation methods which are either un- representative of actual insect roughness or too costly or time-consuming to be applied to wide-scale testing. Furthermore, the role of airfoil geometry in determining the relations between insect impingement locations and roughness sensitivity has not been studied. To link the effects of airfoil geometry, insect impingement locations, and roughness sensitivity, a simulation code was written to determine representative insect collection patterns for different airfoil shapes. Insect collection pattern data was then used to simulate roughness onmore » an NREL S814 airfoil that was tested in a wind tunnel at Reynolds numbers between 1.6 x 10 6 and 4.0 x 10 6. Results are compared to previous tests of a NACA 63 3 -418 airfoil. Increasing roughness height and density results in decreased maximum lift, lift curve slope, and lift-to-drag ratio. Increasing roughness height, density, or Reynolds number results in earlier bypass transition, with critical roughness Reynolds numbers lying within the historical range. Increased roughness sensitivity on the 25% thick NREL S814 is observed compared to the 18% thick NACA 63 3 -418. Blade-element-momentum analysis was used to calculate annual energy production losses of 4.9% and 6.8% for a NACA 63 3 -418 turbine and an NREL S814 turbine, respectively, operating with 200 μm roughness. These compare well to historical field measurements.« less

Roughness sensitivity comparisons of wind turbine blade sections

NASA Astrophysics Data System (ADS)

Wilcox, Benjamin Jacob

One explanation for wind turbine power degradation is insect roughness. Historical studies on insect-induced power degradation have used simulation methods which are either unrepresentative of actual insect roughness or too costly or time-consuming to be applied to wide-scale testing. Furthermore, the role of airfoil geometry in determining the relations between insect impingement locations and roughness sensitivity has not been studied. To link the effects of airfoil geometry, insect impingement locations, and roughness sensitivity, a simulation code was written to determine representative insect collection patterns for different airfoil shapes. Insect collection pattern data was then used to simulate roughness on an NREL S814 airfoil that was tested in a wind tunnel at Reynolds numbers between 1:6 x 106 and 4:0 x 106. Results are compared to previous tests of a NACA 633-418 airfoil. Increasing roughness height and density results in decreased maximum lift, lift curve slope, and lift-to-drag ratio. Increasing roughness height, density, or Reynolds number results in earlier bypass transition, with critical roughness Reynolds numbers lying within the historical range. Increased roughness sensitivity on the 25% thick NREL S814 is observed compared to the 18% thick NACA 633-418. Blade-element-momentum analysis was used to calculate annual energy production losses of 4.9% and 6.8% for a NACA 633-418 turbine and an NREL S814 turbine, respectively, operating with 200 microm roughness. These compare well to historical field measurements.

A finite-element model study of the impact of the proposed I-326 crossing on flood stages of the Congaree River near Columbia, South Carolina

USGS Publications Warehouse

Lee, J.K.; Bennett, C. S.

1981-01-01

A two-dimensional finite element surface water model was used to study the hydraulic impact of the proposed Interstate Route 326 crossing of the Congaree River near Columbia, SC. The finite element model was assessed as a potential operational tool for analyzing complex highway crossings and other modifications of river flood plains. Infrared aerial photography was used to define regions of homogeneous roughness in the flood plain. Finite element networks approximating flood plain topography were designed using elements of three roughness types. High water marks established during an 8-yr flood that occurred in October 1976 were used to calibrate the model. The maximum flood of record, an approximately 100-yr flood that occurred in August 1908, was modeled in three cases: dikes on the right bank, dikes on the left bank, and dikes on both banks. In each of the three cases, simulations were performed both without and with the proposed highway embankments in place. Detailed information was obtained about backwater effects upstream from the proposed highway embankments, changes in flow distribution resulting from the embankments, and local velocities in the bridge openings. On the basis of results from the model study, the South Carolina Department of Highways and Public Transportation changed the design of several bridge openings. A simulation incorporating the new design for the case with dikes on the left bank indicated that both velocities in the bridge openings and backwater were reduced. A major problem in applying the model was the difficulty in predicting the network detail necessary to avoid local errors caused by roughness discontinuities and large depth gradients. (Lantz-PTT)

Probabilistic evaluation of seismic isolation effect with respect to siting of a fusion reactor facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takeda, Masatoshi; Komura, Toshiyuki; Hirotani, Tsutomu

1995-12-01

Annual failure probabilities of buildings and equipment were roughly evaluated for two fusion-reactor-like buildings, with and without seismic base isolation, in order to examine the effectiveness of the base isolation system regarding siting issues. The probabilities are calculated considering nonlinearity and rupture of isolators. While the probability of building failure for both buildings on the same site was almost equal, the function failures for equipment showed that the base-isolated building had higher reliability than the non-isolated building. Even if the base-isolated building alone is located on a higher seismic hazard area, it could compete favorably with the ordinary one inmore » reliability of equipment.« less

High-precision surface analysis of the roughness of Michelangelo's David

NASA Astrophysics Data System (ADS)

Fontana, Raffaella; Gambino, Maria Chiara; Greco, Marinella; Marras, Luciano; Materazzi, Marzia; Pampaloni, Enrico; Pezzati, Luca

2003-10-01

The knowledge of the shape of an artwork is an important element for its study and conservation. When dealing with a statue, roughness measurement is a very useful contribution to document its surface conditions, to assess either changes due to restoration intervention or surface decays due to wearing agents, and to monitor its time-evolution in terms of shape variations. In this work we present the preliminary results of the statistical analysis carried out on acquired data relative to six areas of the Michelangelo"s David marble statue, representative of differently degraded surfaces. Determination of the roughness and its relative characteristic wavelength is shown.

Influence of the Cutting Conditions in the Surface Finishing of Turned Pieces of Titanium Alloys

NASA Astrophysics Data System (ADS)

Huerta, M.; Arroyo, P.; Sánchez Carrilero, M.; Álvarez, M.; Salguero, J.; Marcos, M.

2009-11-01

Titanium is a material that, despite its high cost, is increasingly being introduced in the aerospace industry due to both, its weight, its mechanical properties and its corrosion potential, very close to that of carbon fiber based composite material. This fact allows using Ti to form Fiber Metal Laminates Machining operations are usually used in the manufacturing processes of Ti based aerospace structural elements. These elements must be machined under high surface finish requirements. Previous works have shown the relationship between the surface roughness and the tool changes in the first instants of turning processes. From these results, new tests have been performed in an aeronautical factory, in order to analyse roughness in final pieces.

Investigation of the influence of a step change in surface roughness on turbulent heat transfer

NASA Technical Reports Server (NTRS)

Taylor, Robert P.; Coleman, Hugh W.; Taylor, J. Keith; Hosni, M. H.

1991-01-01

The use is studied of smooth heat flux gages on the otherwise very rough SSME fuel pump turbine blades. To gain insights into behavior of such installations, fluid mechanics and heat transfer data were collected and are reported for a turbulent boundary layer over a surface with a step change from a rough surface to a smooth surface. The first 0.9 m length of the flat plate test surface was roughened with 1.27 mm hemispheres in a staggered, uniform array spaced 2 base diameters apart. The remaining 1.5 m length was smooth. The effect of the alignment of the smooth surface with respect to the rough surface was also studied by conducting experiments with the smooth surface aligned with the bases or alternatively with the crests of the roughness elements. Stanton number distributions, skin friction distributions, and boundary layer profiles of temperature and velocity are reported and are compared to previous data for both all rough and all smooth wall cases. The experiments show that the step change from rough to smooth has a dramatic effect on the convective heat transfer. It is concluded that use of smooth heat flux gages on otherwise rough surfaces could cause large errors.

Non-Contact Surface Roughness Measurement by Implementation of a Spatial Light Modulator

PubMed Central

Aulbach, Laura; Salazar Bloise, Félix; Lu, Min; Koch, Alexander W.

2017-01-01

The surface structure, especially the roughness, has a significant influence on numerous parameters, such as friction and wear, and therefore estimates the quality of technical systems. In the last decades, a broad variety of surface roughness measurement methods were developed. A destructive measurement procedure or the lack of feasibility of online monitoring are the crucial drawbacks of most of these methods. This article proposes a new non-contact method for measuring the surface roughness that is straightforward to implement and easy to extend to online monitoring processes. The key element is a liquid-crystal-based spatial light modulator, integrated in an interferometric setup. By varying the imprinted phase of the modulator, a correlation between the imprinted phase and the fringe visibility of an interferogram is measured, and the surface roughness can be derived. This paper presents the theoretical approach of the method and first simulation and experimental results for a set of surface roughnesses. The experimental results are compared with values obtained by an atomic force microscope and a stylus profiler. PMID:28294990

Fatigue Debonding of the Roughened Stem–Cement Interface: Effects of Surface Roughness and Stem Heating Conditions

PubMed Central

Damron, Leatha A.; Kim, Do-Gyoon; Mann, Kenneth A.

2007-01-01

The aim of this study was to determine the effects of cyclic loading on the debond process of a roughened stem– cement interface used in total hip arthroplasty. The specific goals were to assess the effects of two surgeon-controlled variables (stem heating and degree of stem surface roughness) and to determine if an independent finite element-based fracture mechanics model could be used to predict the debond response. A clamped cantilever beam geometry was used to determine the fatigue debond response of the stem– cement interface and was created using an experimental mold that simulated in vivo cementing conditions. A second experiment was performed using a torsion-loading model representative of the stem– cement–bone composite. For both experiments, two stem heating (room temperature and 50°C) and surface roughness conditions (grit blasted: Ra = 2.3 and 5.1 μm) were used. Finally, a finite element model of the torsion experiment with provision for crack growth was developed and compared with the experimental results. Results from both experiments revealed that neither stem preheating nor use of a stem with a greater surface roughness had a marked effect on the fatigue debond response. There was substantial variability in the debond response for all cases; this may be due to microscopic gaps at the interface for all interface conditions. The debond rate from the finite element simulation (10−7.31 m/cycle) had a magnitude similar to the experimental torsion model (10− (6.77 ± 1.25) m/cycle). This suggests that within the context of the experimental conditions studied here that the debond response could be assessed using a linear elastic fracture mechanics-type approach. PMID:16292769

Pump for molten metal or other fluid

DOEpatents

Horton, James A.; Brown, Donald L.

1994-01-01

A pump having no moving parts which can be used to pump high temperature molten metal or other fluids in a vacuum or low pressure environment, and a method for pumping such fluids. The pump combines elements of a bubble pump with a trap which isolates the vacuum or low pressure region from the gas used to create the bubbles. When used in a vacuum the trap prevents the pumping gas from escaping into the isolated region and thereby reducing the quality of the vacuum. The pump includes a channel in which a pumping gas is forced under pressure into a cavity where bubbles are formed. The cavity is in contact with a reservoir which contains the molten metal or other fluid which is to be pumped. The bubbles rise up into a column (or pump tube) carrying the fluid with them. At the top of the column is located a deflector which causes the bubbles to burst and the drops of pumped fluid to fall into a trap. The fluid accumulates in the trap, eventually forcing its way to an outlet. A roughing pump can be used to withdraw the pumping gas from the top of the column and assist with maintaining the vacuum or low pressure environment.

The evolution of fracture surface roughness and its dependence on slip

NASA Astrophysics Data System (ADS)

Wells, Olivia L.

Under effective compression, impingement of opposing rough surfaces of a fracture can force the walls of the fracture apart during slip. Therefore, a fracture's surface roughness exerts a primary control on the amount of dilation that can be sustained on a fracture since the opposing surfaces need to remain in contact. Previous work has attempted to characterize fracture surface roughness through topographic profiles and power spectral density analysis, but these metrics describing the geometry of a fracture's surface are often non-unique when used independently. However, when combined these metrics are affective at characterizing fracture surface roughness, as well as the mechanisms affecting changes in roughness with increasing slip, and therefore changes in dilation. These mechanisms include the influence of primary grains and pores on initial fracture roughness, the effect of linkage on locally increasing roughness, and asperity destruction that limits the heights of asperities and forms gouge. This analysis reveals four essential stages of dilation during the lifecycle of a natural fracture, whereas previous slip-dilation models do not adequately address the evolution of fracture surface roughness: (1) initial slip companied by small dilation is mediated by roughness controlled by the primary grain and pore dimensions; (2) rapid dilation during and immediately following fracture growth by linkage of formerly isolated fractures; (3) wear of the fracture surface and gouge formation that minimizes dilation; and (4) between slip events cementation that modifies the mineral constituents in the fracture. By identifying these fundamental mechanisms that influence fracture surface roughness, this new conceptual model relating dilation to slip has specific applications to Enhanced Geothermal Systems (EGS), which attempt to produce long-lived dilation in natural fractures by inducing slip.

The effect of catchment discretization on rainfall-runoff model predictions

NASA Astrophysics Data System (ADS)

Goodrich, D.; Grayson, R.; Willgoose, G.; Palacios-Valez, O.; Bloschl, G.

2003-04-01

Application of distributed hydrologic watershed models fundamentally requires watershed partitioning or discretization. In addition to partitioning the watershed into modelling elements, these elements typically represent a further abstraction of the actual watershed surface and its relevant hydrologic properties. A critical issue that must be addressed by any user of these models prior to their application is definition of an acceptable level and type of watershed discretization or geometric model complexity. A quantitative methodology to define a level of geometric model complexity commensurate with a specified level of model performance is developed for watershed rainfall-runoff modelling. The methodology is tested on four subcatchments which cover a range of watershed scales of over three orders of magnitude in the USDA-ARS Walnut Gulch Experimental Watershed in Southeastern Arizona. It was found that distortion of the hydraulic roughness can compensate for a lower level of discretization (fewer channels) to a point. Beyond this point, hydraulic roughness distortion cannot compensate for the topographic distortion of representing the watershed by fewer elements (e.g. less complex channel network). Similarly, differences in representation of topography by different model or digital elevation model (DEM) types (e.g. Triangular Irregular Elements - TINs; contour lines; and regular grid DEMs) also result in difference in runoff routing responses that can be largely compensated for by a distortion in hydraulic roughness or path length. To put the effect of these discretization models in context it will be shown that relatively small non-compliance with Peclet number restrictions on timestep size can overwhelm the relatively modest differences resulting from the type of representation of topography.

Comparison of different types of phacoemulsification tips. I. Quantitative analysis of elemental composition and tip surface microroughness.

PubMed

Tsaousis, Konstantinos T; Werner, Liliana; Perez, Jesus Paulo; Li, He J; Reiter, Nicholas; Guan, Jia J; Mamalis, Nick

2016-09-01

To evaluate the elemental composition of phacoemulsification tips and their surface roughness in the microscale. John A. Moran Eye Center and Utah Nanofab, College of Engineering, University of Utah, Salt Lake City, Utah, USA. Experimental study. Seven types of phacoemulsification tips were studied. The phaco tips were examined through energy-dispersive x-ray spectroscopy (EDS) and x-ray photoelectron spectroscopy (XPS) for elemental composition. In addition, the roughness of the opening in all tips was assessed through 3-dimensional white-light interferometry. Elemental analysis showed considerable differences in the surface layers between manufacturers. Alcon tips had a thinner oxidized titanium (Ti) layer in their surface. Through XPS, vanadium was not detected in the superficial layers of any tip, but only in deeper levels. The microroughness surface analysis showed comparable results regarding their root-mean-square (RMS) metric. Maximum peak valley distance values varied and appeared to be dependent on the quality of material process rather than the material itself. Phacoemulsification tips are made of Ti alloys and showed differences between models, especially regarding their composition in the superficial layers. Their opening end roughness showed an overall appropriate RMS value of less than 1.0 μm in all cases. The existence of small defected areas highlights the importance of adequate quality control of these critical surgical instruments. None of the authors has a financial or proprietary interest in any material or method mentioned. Copyright © 2016 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

Development of channel organization and roughness following sediment pulses in single‐thread, gravel bed rivers

USGS Publications Warehouse

Madej, Mary Ann

2001-01-01

Large, episodic inputs of coarse sediment (sediment pulses) in forested, mountain streams may result in changes in the size and arrangement of bed forms and in channel roughness. A conceptual model of channel organization delineates trajectories of response to sediment pulses for many types of gravel bed channels. Channels exhibited self‐organizing behavior to various degrees based on channel gradient, presence of large in‐channel wood or other forcing elements, the size of the sediment pulse, and the number of bed‐mobilizing flows since disturbance. Typical channel changes following a sediment pulse were initial decreases in water depth, in variability of bed elevations, and in the regularity of bed form spacing. Trajectories of change subsequently showed increased average water depth, more variable and complex bed topography, and increased uniformity of bed form spacing. Bed form spacing in streams with abundant forcing elements developed at a shorter spatial scale (two to five channel widths) than in streams without such forcing mechanisms (five to 10 channel widths). Channel roughness increased as bed forms developed.

Effect of blade-surface-roughness on the pumping performance of a turbomolecular pump

NASA Astrophysics Data System (ADS)

Sawada, T.; Yabuki, M.; Sugiyama, W.; Watanabe, M.

2005-11-01

Turbomolecular pumps (TMPs) are widely used in the semiconductor and other thin film industries. Some semiconductor processes form corrosive gases such as HCl or HF as byproducts. The elements of a TMP are sometimes coated with ceramic (SiO2) film for the purpose of preventing corrosion of the TMP. The blades coated with SiO2 have relatively rough surfaces. The effect of the surface roughness of the blades on the pumping performance has been studied experimentally and theoretically. Experimental results for TMPs with two rotor disks and one stator disk show that the TMP coated with SiO2 film gives about 11% to 13% higher maximum-compression ratio than the noncoated TMP when the blade speed ratio is 0.47. The theory based on the conic peak/dimple-surface-roughness model that has been proposed by the authors explains the change in the compression ratio with the surface roughness shown in the experiment.

An Investigation of the Influence of Initial Roughness on the Friction and Wear Behavior of Ground Surfaces

PubMed Central

Liang, Guoxing; Schmauder, Siegfried; Lyu, Ming; Schneider, Yanling; Zhang, Cheng; Han, Yang

2018-01-01

Friction and wear tests were performed on AISI 1045 steel specimens with different initial roughness parameters, machined by a creep-feed dry grinding process, to study the friction and wear behavior on a pin-on-disc tester in dry sliding conditions. Average surface roughness (Ra), root mean square (Rq), skewness (Rsk) and kurtosis (Rku) were involved in order to analyse the influence of the friction and wear behavior. The observations reveal that a surface with initial roughness parameters of higher Ra, Rq and Rku will lead to a longer initial-steady transition period in the sliding tests. The plastic deformation mainly concentrates in the depth of 20–50 μm under the worn surface and the critical plastic deformation is generated on the rough surface. For surfaces with large Ra, Rq, low Rsk and high Rku values, it is easy to lose the C element in, the reciprocating extrusion. PMID:29401703

Determining Surface Roughness in Urban Areas Using Lidar Data

NASA Technical Reports Server (NTRS)

Holland, Donald

2009-01-01

An automated procedure has been developed to derive relevant factors, which can increase the ability to produce objective, repeatable methods for determining aerodynamic surface roughness. Aerodynamic surface roughness is used for many applications, like atmospheric dispersive models and wind-damage models. For this technique, existing lidar data was used that was originally collected for terrain analysis, and demonstrated that surface roughness values can be automatically derived, and then subsequently utilized in disaster-management and homeland security models. The developed lidar-processing algorithm effectively distinguishes buildings from trees and characterizes their size, density, orientation, and spacing (see figure); all of these variables are parameters that are required to calculate the estimated surface roughness for a specified area. By using this algorithm, aerodynamic surface roughness values in urban areas can then be extracted automatically. The user can also adjust the algorithm for local conditions and lidar characteristics, like summer/winter vegetation and dense/sparse lidar point spacing. Additionally, the user can also survey variations in surface roughness that occurs due to wind direction; for example, during a hurricane, when wind direction can change dramatically, this variable can be extremely significant. In its current state, the algorithm calculates an estimated surface roughness for a square kilometer area; techniques using the lidar data to calculate the surface roughness for a point, whereby only roughness elements that are upstream from the point of interest are used and the wind direction is a vital concern, are being investigated. This technological advancement will improve the reliability and accuracy of models that use and incorporate surface roughness.

Isolated resonator gyroscope with isolation trimming using a secondary element

NASA Technical Reports Server (NTRS)

Challoner, A. Dorian (Inventor); Shcheglov, Kirill V. (Inventor)

2006-01-01

The present invention discloses a resonator gyroscope including an isolated resonator. One or more flexures support the isolated resonator and a baseplate is affixed to the resonator by the flexures. Drive and sense elements are affixed to the baseplate and used to excite the resonator and sense movement of the gyroscope. In addition, at least one secondary element (e.g., another electrode) is affixed to the baseplate and used for trimming isolation of the resonator. The resonator operates such that it transfers substantially no net momentum to the baseplate when the resonator is excited. Typically, the isolated resonator comprises a proof mass and a counterbalancing plate.

Underwater sky image as remote sensing instrument of sea roughness parameters and its variability

NASA Astrophysics Data System (ADS)

Molkov, Alexander A.; Dolin, Lev S.; Kapustin, Ivan A.; Sergievskaya, Irina A.; Shomina, Olga V.

2016-10-01

At present a sufficient amount of methods is offered for determining the characteristics of sea roughness in accordance with optical images of wavy water surface obtained from different near-shore constructions, sea platforms, vessels, aircraft and satellites. The most informative elements in this case are solar path and peripheral areas of the image free from sun glitters. However, underwater images of the surface obtained with the help of optical receiver located at a certain depth contain apart from the mentioned elements one more informative element- Snell's window. It is an underwater sky image which distortions of border contain information on roughness characteristics and serve as the indicator of its variability. The research offers the method for determining energy spectra of wind waves in accordance with the second statistical moment of Snell's window image. The results of testing of the offered method are provided based on natural images registered in the course of trip to the Black Sea under conditions of different wind and wave environment for clear surface and surface covered by surfactant films. For both cases frequency spectra of surface slopes are recovered and their good coincidence to the spectra received by processing of signals from a string wave recorder is established. Efficiency of application of the offered method for tasks of remote monitoring and environmental control of natural reservoirs is shown.

Smoothed particle hydrodynamics study of the roughness effect on contact angle and droplet flow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shigorina, Elena; Kordilla, Jannes; Tartakovsky, Alexandre M.

We employ a pairwise force Smoothed Particle Hydrodynamics (PF-SPH) model to simulate sessile and transient droplets on rough hydrophobic and hydrophilic surfaces. PF-SPH allows for modeling of free surface flow without discretizing the air phase, which is achieved by imposing the surface tension and dynamic contact angles with pairwise interaction forces. We use the PF-SPH model to study the effect of surface roughness and microscopic contact angle on the effective contact angle and droplet dynamics. In the first part of this work, we investigate static contact angles of sessile droplets on rough surfaces in a shape of a sinusoidal functionmore » and made of rectangular bars placed on top of a flat surface. We find that the effective static contact angles of Cassie and Wenzel droplets on a rough surface are greater than the corresponding microscale static contact angles. As a result, microscale hydrophobic rough surfaces also show effective hydrophobic behavior. On the other hand, microscale hydrophilic surfaces may be macroscopically hydrophilic or hydrophobic, depending on the type of roughness. Next, we study the impact of the roughness orientation (i.e., an anisotropic roughness) and surface inclination on droplet flow velocities. Simulations show that droplet flow velocities are lower if the surface roughness is oriented perpendicular to the flow direction. If the predominant elements of surface roughness are in alignment with the flow direction, the flow velocities increase compared to smooth surfaces, which can be attributed to the decrease in fluid-solid contact area similar to the classical lotus effect. We demonstrate that linear scaling relationships between Bond and capillary number for droplet flow on flat surfaces also hold for flow on rough surfaces.« less

Fine structure of the late Eocene Ir anomaly in marine sediments

NASA Technical Reports Server (NTRS)

Asaro, F.

1991-01-01

The Late Eocene Ir abundance profile in deep sea cores from Ocean Drilling Program Leg 113 Hole 689B on the Maude Rise off of Antarctica was studied with 410 samples continuously in 10 cm increments and measured with the Iridium Coincidence (ICS). The ICS was subsequently modified to measure 13 other elements simultaneously with the Ir. The abundance profiles of these elements were then determined in the Late Eocene Massignano section in central Italy with 250 samples (encompassing roughly 2 million years of accumulation) which were collected about every 5 cm in about 2 cm increments. These studies augmented a previous one (which included many elements) of deep sea cores from Deep Sea Drilling Project Site 592 on the Lord Howe Rise in the Tasman Sea between Australia and New Zealand. In the latter study, 50 samples (encompassing roughly 0.7 million years of accumulation) were collected continuously in 10 cm increments. The results from these studies are discussed.

Our Community -- Today and Yesterday. Book One (Nihil Hahoodzodoo -- Diijiidi doo Adaadaa. Naaltsoos T'aala'i Gone Yits'iligii). Fourth Grade Navajo Bilingual-Bicultural Social Studies Curriculum.

ERIC Educational Resources Information Center

Bia, Fred; And Others

Presented in five chapters, book 1 of the Rough Rock fourth grade Navajo social studies program text is written in Navajo and English. The first chapter is on the community of Rough Rock (Arizona) illustrated by photographs of the community and people. Chapter II discusses the four elements (air, water, earth, and fire) the community needs to…

Observation of laser formation inside a laser cavity containing a phase conjugate mirror

NASA Astrophysics Data System (ADS)

Wu, Frank F.

2012-03-01

Adaptive optics (AO) systems are used to compensate atmospheric perturbations on a propagating laser beam. However, AO needs a beacon to obtain the phase information. This paper presents a possible formation of beacon in target-in-theloop (TIL) geometry which is analog to a laser cavity. The TIL laser cavity is formed with a high reflectivity mirror on one end and an optical phase conjugate mirror as the second mirror. The TIL laser is initialized by a single frequency 10 ns Q-switched laser pulse. This is very similar to how an injection seeding or regenerative amplifier scheme starts a laser oscillation. With a cavity length of around 11 meters and an initial laser pulse of 10 ns, we have been able to isolate laser field images related to each round-trip pulse. Furthermore, by replacing the first mirror with a rough-surface target to simulate an uncooperative target and adding phase distortion elements to simulate atmospheric effects, we can observe the image status under such conditions.

Modeling interface shear behavior of granular materials using micro-polar continuum approach

NASA Astrophysics Data System (ADS)

Ebrahimian, Babak; Noorzad, Ali; Alsaleh, Mustafa I.

2018-01-01

Recently, the authors have focused on the shear behavior of interface between granular soil body and very rough surface of moving bounding structure. For this purpose, they have used finite element method and a micro-polar elasto-plastic continuum model. They have shown that the boundary conditions assumed along the interface have strong influences on the soil behavior. While in the previous studies, only very rough bounding interfaces have been taken into account, the present investigation focuses on the rough, medium rough and relatively smooth interfaces. In this regard, plane monotonic shearing of an infinite extended narrow granular soil layer is simulated under constant vertical pressure and free dilatancy. The soil layer is located between two parallel rigid boundaries of different surface roughness values. Particular attention is paid to the effect of surface roughness of top and bottom boundaries on the shear behavior of granular soil layer. It is shown that the interaction between roughness of bounding structure surface and the rotation resistance of bounding grains can be modeled in a reasonable manner through considered Cosserat boundary conditions. The influence of surface roughness is investigated on the soil shear strength mobilized along the interface as well as on the location and evolution of shear localization formed within the layer. The obtained numerical results have been qualitatively compared with experimental observations as well as DEM simulations, and acceptable agreement is shown.

Effects of surface roughness on an adverse-pressure-gradient separating turbulent boundary layer

NASA Astrophysics Data System (ADS)

Wu, Wen; Piomelli, Ugo; Turbulence Simulation; Modelling Laboratory Team

2017-11-01

Separating turbulent boundary layers over smooth and rough flat plates are investigated by large-eddy simulations. A suction-blowing velocity distribution is imposed at the top boundary to produce an adverse-to-favourable pressure gradient and a closed separation bubble. Sandgrain roughness in the fully-rough regime is modelled by an immersed boundary method. In the rough-wall case, streamline detachment occurs earlier and the separation region is substantially larger due to the momentum deficit caused by the roughness. The adverse pressure gradient decreases the form drag and causes a thin reversed-flow region below the roughness crest, so that Cf = 0 does not coincide with the detachment of the flow from the surface. The wake regions behind roughness elements affect the intermittency of the near-wall flow, so that upstream of the detachment point the flow can be reversed half of the time, but its average is positive. The separated shear layer exhibits higher turbulent kinetic energy (TKE); the growth of the TKE there begins earlier relative to the separation point, and the peak TKE occurs close to the separation point. The momentum deficit caused by the roughness, again, plays a critical role in these changes. The authors acknowledge the support from Hydro-Québec and the NSERC Collaborative Research & Development program (CRDPJ 418786-11). The simulations were performed at CAC Queen't site. UP also thanks the support of Canada Research Chair Program.

Addressing scale dependence in roughness and morphometric statistics derived from point cloud data.

NASA Astrophysics Data System (ADS)

Buscombe, D.; Wheaton, J. M.; Hensleigh, J.; Grams, P. E.; Welcker, C. W.; Anderson, K.; Kaplinski, M. A.

2015-12-01

The heights of natural surfaces can be measured with such spatial density that almost the entire spectrum of physical roughness scales can be characterized, down to the morphological form and grain scales. With an ability to measure 'microtopography' comes a demand for analytical/computational tools for spatially explicit statistical characterization of surface roughness. Detrended standard deviation of surface heights is a popular means to create continuous maps of roughness from point cloud data, using moving windows and reporting window-centered statistics of variations from a trend surface. If 'roughness' is the statistical variation in the distribution of relief of a surface, then 'texture' is the frequency of change and spatial arrangement of roughness. The variance in surface height as a function of frequency obeys a power law. In consequence, roughness is dependent on the window size through which it is examined, which has a number of potential disadvantages: 1) the choice of window size becomes crucial, and obstructs comparisons between data; 2) if windows are large relative to multiple roughness scales, it is harder to discriminate between those scales; 3) if roughness is not scaled by the texture length scale, information on the spacing and clustering of roughness `elements' can be lost; and 4) such practice is not amenable to models describing the scattering of light and sound from rough natural surfaces. We discuss the relationship between roughness and texture. Some useful parameters which scale vertical roughness to characteristic horizontal length scales are suggested, with examples of bathymetric point clouds obtained using multibeam from two contrasting riverbeds, namely those of the Colorado River in Grand Canyon, and the Snake River in Hells Canyon. Such work, aside from automated texture characterization and texture segmentation, roughness and grain size calculation, might also be useful for feature detection and classification from point clouds.

Discrete Roughness Effects on Shuttle Orbiter at Mach 6

NASA Technical Reports Server (NTRS)

Berry, Scott A.; Hamilton, H. Harris, II

2002-01-01

Discrete roughness boundary layer transition results on a Shuttle Orbiter model in the NASA Langley Research Center 20-Inch Mach 6 Air Tunnel have been reanalyzed with new boundary layer calculations to provide consistency for comparison to other published results. The experimental results were previously obtained utilizing the phosphor thermography system to monitor the status of the boundary layer via global heat transfer images of the Orbiter windward surface. The size and location of discrete roughness elements were systematically varied along the centerline of the 0.0075-scale model at an angle of attack of 40 deg and the boundary layer response recorded. Various correlative approaches were attempted, with the roughness transition correlations based on edge properties providing the most reliable results. When a consistent computational method is used to compute edge conditions, transition datasets for different configurations at several angles of attack have been shown to collapse to a well-behaved correlation.

Viscoelastic reciprocating contacts in presence of finite rough interfaces: A numerical investigation

NASA Astrophysics Data System (ADS)

Putignano, Carmine; Carbone, Giuseppe

2018-05-01

Viscoelastic reciprocating contacts are crucial in a number of systems, ranging from sealing components to viscoelastic dampers. Roughness plays in these conditions a central role, but no exhaustive assessment in terms of influence on area, separation and friction has been drawn so far. This is due to the huge number of time and space scales involved in the problem. By means of an innovative Boundary Element methodology, which treats the time as a parameter and then requires only to discretize the space domain, we investigate the viscoelastic reciprocating contact mechanics between rough solids. In particular, we consider the alternate contact of a rigid finite-size rough punch over a viscoelastic layer: the importance of the domain finiteness in the determination of the contact area and the contact solution anisotropy is enlightened. Implications on real system may be drawn on this basis. Finally, we focus on the hysteretic cycle related to the viscoelastic tangential forces.

A novel approach for quantitative evaluation of the physicochemical interactions between rough membrane surface and sludge foulants in a submerged membrane bioreactor.

PubMed

Lin, Hongjun; Zhang, Meijia; Mei, Rongwu; Chen, Jianrong; Hong, Huachang

2014-11-01

This study proposed a novel approach for quantitative evaluation of the physicochemical interactions between a particle and rough surface. The approach adopts the composite Simpson's rule to numerically calculate the double integrals in the surface element integration of these physicochemical interactions. The calculation could be achieved by a MATLAB program based on this approach. This approach was then applied to assess the physicochemical interactions between rough membrane surface and sludge foulants in a submerged membrane bioreactor (MBR). The results showed that, as compared with smooth membrane surface, rough membrane surface had a much lower strength of interactions with sludge foulants. Meanwhile, membrane surface morphology significantly affected the strength and properties of the interactions. This study showed that the newly developed approach was feasible, and could serve as a primary tool for investigating membrane fouling in MBRs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Distributed-Roughness Effects on Stability and Transition In Swept-Wing Boundary Layers

NASA Technical Reports Server (NTRS)

Carrillo, Ruben B., Jr.; Reibert, Mark S.; Saric, William S.

1997-01-01

Boundary-layer stability experiments are conducted in the Arizona State University Unsteady Wind Tunnel on a 45 deg swept airfoil. The pressure distribution and test conditions are designed to suppress Tollmien-Schlichting disturbances and provide crossflow-dominated transition. The surface of the airfoil is finely polished to a near mirror finish. Under these conditions, submicron surface irregularities cause the naturally occurring stationary crossflow waves to grow to nonuniform amplitudes. Spanwise-uniform stationary crossflow disturbances are generated through careful control of the initial conditions with full-span arrays of micron-high roughness elements near the attachment line. Detailed hot-wire measurements are taken to document the stationary crossflow structure and determine growth rates for the total and individual-mode disturbances. Naphthalene flow visualization provides transition location information. Roughness spacing and roughness height are varied to examine the effects on transition location and all amplified wavelengths. The measurements show that roughness spacings that do not contain harmonics equal to the most unstable wavelength as computed by linear stability theory effectively suppress the most unstable mode. Under certain conditions, subcritical roughness spacing delays transition past that of the corresponding smooth surface.

Transition Experiments on Large Bluntness Cones with Distributed Roughness in Hypersonic Flight

NASA Technical Reports Server (NTRS)

Reda, Daniel. C.; Wilder, Michael C.; Prabhu, Dinesh K.

2012-01-01

Large bluntness cones with smooth nosetips and roughened frusta were flown in the NASA Ames hypersonic ballistic range at a Mach number of 10 through quiescent air environments. Global surface intensity (temperature) distributions were optically measured and analyzed to determine transition onset and progression over the roughened surface. Real-gas Navier-Stokes calculations of model flowfields, including laminar boundary layer development in these flowfields, were conducted to predict values of key dimensionless parameters used to correlate transition on such configurations in hypersonic flow. For these large bluntness cases, predicted axial distributions of the roughness Reynolds number showed (for each specified freestream pressure) that this parameter was a maximum at the physical beginning of the roughened zone and decreased with increasing run length along the roughened surface. Roughness-induced transition occurred downstream of this maximum roughness Reynolds number location, and progressed upstream towards the beginning of the roughened zone as freestream pressure was systematically increased. Roughness elements encountered at the upstream edge of the roughened frusta thus acted like a finite-extent trip array, consistent with published results concerning the tripping effectiveness of roughness bands placed on otherwise smooth surfaces.

Transition Experiments on Blunt Bodies with Distributed Roughness in Hypersonic Free Flight in Carbon Dioxide

NASA Technical Reports Server (NTRS)

Wilder, Michael C.; Reda, Daniel C.; Prabhu, Dinesh K.

2015-01-01

Blunt-body geometries were flown through carbon dioxide in the NASA Ames Hypervelocity Free Flight Aerodynamic Facility to investigate the influence of distributed surface roughness on transition to turbulence in CO2-dominated atmospheres, such as those of Mars and Venus. Tests were also performed in air for direct comparison with archival results. Models of hemispherical and spherically-blunted large-angle conical geometries were flown at speeds between 2.8 km/s and 5.1 km/s and freestream pressures between 50 Torr and 228 Torr. Transition fronts were determined from global surface heat flux distributions measured using thermal imaging techniques. Distributed surface roughness was produced by grit-blasting the model surfaces. Real-gas Navier-Stokes solutions were used to calculate non-dimensional correlating parameters at the measured transition onset locations. Transition-onset locations correlated well with a constant roughness Reynolds number based on the mean roughness element height. The critical roughness Reynolds number for transition onset determined for flight in CO2 was 223 +/- 25%. This mean value is lower than the critical value of 250 +/- 20% previously-established from tests conducted in air, but within the bounds of the expected measurement uncertainty.

Cross Flow Effects on Glaze Ice Roughness Formation

NASA Technical Reports Server (NTRS)

Tsao, Jen-Ching

2004-01-01

The present study examines the impact of large-scale cross flow on the creation of ice roughness elements on the leading edge of a swept wing under glaze icing conditions. A three-dimensional triple-deck structure is developed to describe the local interaction of a 3 D air boundary layer with ice sheets and liquid films. A linear stability analysis is presented here. It is found that, as the sweep angle increases, the local icing instabilities enhance and the most linearly unstable modes are strictly three dimensional.

Scattering of Acoustic Waves from Ocean Boundaries

DTIC Science & Technology

2015-09-30

of buried mines and improve SONAR performance in shallow water. OBJECTIVES 1) Determination of the correct physical model of acoustic propagation... acoustic parameters in the ocean. APPROACH 1) Finite Element Modeling for Range Dependent Waveguides: Finite element modeling is applied to a...roughness measurements for reverberation modeling . GLISTEN data provide insight into the role of biology on acoustic propagation and scattering

Scuffing Characteristics of High-Load Rolling/Sliding Contacts Operating in Liquid Oxygen: Effects of Materials and Surface Roughness

NASA Technical Reports Server (NTRS)

Chang, L.; Hall, P. B.; Thom, R.

1996-01-01

This research reports on an experimental study of the effects of materials and surface roughness on the scuffing characteristics of rolling/sliding contacts cooled and lubricated with liquid oxygen. Experiments were carried out under heavy loading with a Hertzian pressure in the range of 2.0 GPa to 3.0 GPa and with a high rolling velocity of up to 48 m/s. For contacts between AISI 440 C stainless-steel elements, the results showed that the scuffing behavior of the system was fairly consistent under a wide range of rolling velocity. Scuffing commenced at a small slide-to-roll ratio of around 0.02, and the scuffing behavior of the contact was not sensitive to surface roughness for the test-sample RMS roughness ranging from 0.02 microns to 0.10 microns. For contacts between 440 C and Si3N4 elements, on the other hand, the scuffing behavior of the system was not very consistent and somewhat unpredictable. The results were sensitive to surface roughness particularly that of the Si3N4 test sample. With well polished test samples, consistent results were obtained; the level of traction was lower than that with a 440 C toroid and scuffing did not take place up to a slide-to-roll ratio of near 0.03. The results strongly suggest that significant hydrodynamic effect can be generated by liquid oxygen under heavy loading and high velocity conditions. The results also suggest that the hydrodynamic action is likely generated by the conventional viscous mechanism as it can be largely destroyed by a narrow circumferential surface scratch running through the central region of the contact.

Rough versus smooth topography along oceanic hotspot tracks: Observations and scaling analysis

NASA Astrophysics Data System (ADS)

Orellana-Rovirosa, Felipe; Richards, Mark

2017-05-01

Some hotspot tracks are topographically smooth and broad (Nazca, Carnegie/Cocos/Galápagos, Walvis, Iceland), while others are rough and discontinuous (Easter/Sala y Gomez, Tristan-Gough, Louisville, St. Helena, Hawaiian-Emperor). Smooth topography occurs when the lithospheric age at emplacement is young, favoring intrusive magmatism, whereas rough topography is due to isolated volcanic edifices constructed on older/thicker lithosphere. The main controls on the balance of intrusive versus extrusive magmatism are expected to be the hotspot swell volume flux Qs, plate hotspot relative speed v, and lithospheric elastic thickness Te, which can be combined as a dimensionless parameter R = (Qs/v)1/2/Te, which represents the ratio of plume heat to the lithospheric heat capacity. Observational constraints show that, except for the Ninetyeast Ridge, R is a good predictor of topographic character: for R < 1.5 hotspot tracks are topographically rough and dominated by volcanic edifices, whereas for R > 3 they are smooth and dominated by intrusion.

The effect of piezoelectric ultrasonic instrumentation on titanium discs: a microscopy and trace elemental analysis in vitro study.

PubMed

Tawse-Smith, A; Atieh, M A; Tompkins, G; Duncan, W J; Reid, M R; Stirling, C H

2016-08-01

To evaluate in vitro topographical and composition changes by piezoelectric ultrasonic instrumentation with metallic and plastic tips on machined and moderately roughened titanium surfaces. Twenty machined and moderately roughened laser-marked titanium discs were ultrasonically instrumented with metallic and plastic tips. Surface instrumentation was carried out with controlled pressure for 20 and 30 seconds at two power settings. For each time and power setting, instrumentation was repeated four times with one instrumentation per disc quadrant. Surface topography analysis was performed using scanning electron microscopy (SEM) and confocal laser scanning microscopy (CLSM). Surface roughness measurements were compared between instrumented and non-instrumented surfaces. Surface element composition and rinsing solutions were evaluated using energy-dispersive spectroscopy (EDS) and trace elemental analysis using inductively coupled plasma mass spectrometry (ICPMS), respectively. SEM photomicrographs and CLSM 3D surface plot images of instrumented machined and moderately roughened surfaces demonstrated severe surface topographical alterations with metallic tips and mild to moderate changes for plastic tip instrumented sites. ICPMS analysis of the rinsing solutions identified titanium and other metal traces with the use of metallic tips, and mainly titanium and carbon when plastic tips were used. Surface EDS analysis showed elemental traces of the ultrasonic tips. Ultrasonic instrumentation with metallic or plastic tips created surface topographical and compositional changes. Different changes in surface topography were noted between the surfaces, as the roughness of the machined surfaces increased while the extent of roughness of the moderately roughened surfaces decreased. The clinical relevance of these changes is yet to be determined. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Multidrug-resistant Staphylococcus haemolyticus isolates from infected eyes and healthy conjunctivae in India.

PubMed

Panda, Sasmita; Kar, Sarita; Sharma, Savitri; Singh, Durg V

2016-09-01

This study aimed to determine the presence of antibiotic resistance genes (ARGs), SCCmec elements and genetic relatedness among Staphylococcus haemolyticus isolated from patients with a variety of eye infections (n=11) and from healthy conjunctiva (n=7). Minimum inhibitory concentrations were determined for 14 antimicrobials according to BSAC guidelines. PCR was used to identify the presence of mecA, mecC, SCCmec type and ARGs. Sequencing was used to determine mutations in gyrA, gyrB, topoisomerase IVA and IVB genes. Genetic relatedness was determined by PFGE. Of the 18 isolates, 17 showed resistance to at least one antibiotic, but none showed resistance to vancomycin or rifampicin. Ten isolates were oxacillin-resistant and carried the mecA gene, eight of which belonged to SCCmec type V. The presence of non-mec SCC elements in two meticillin-susceptible isolates and untypeable SCC elements in meticillin-resistant isolates suggests the involvement of S. haemolyticus in the diversification of SCC elements. Sequence analysis revealed point mutations in gyrA (Ser-84→Leu) and topoisomerase IVA genes (Ser-80→Leu) in 13 isolates, and additional variation in the QRDR (Asp-84→Asn) of two isolates, showing good correlation between mutations in gyrA and topoisomerase IV genes and the level of resistance to fluoroquinolones. PFGE analysis showed distinct pulsotypes forming two major clusters, indicating the existence of diversity among isolates, irrespective of the source of isolation. This study suggests that S. haemolyticus isolates from infected eyes and healthy conjunctivae invariably carried ARGs and SCCmec elements and showed diversity in their genomic content, irrespective of the source of isolation. Copyright © 2016 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.

Smoothed particle hydrodynamics study of the roughness effect on contact angle and droplet flow.

PubMed

Shigorina, Elena; Kordilla, Jannes; Tartakovsky, Alexandre M

2017-09-01

We employ a pairwise force smoothed particle hydrodynamics (PF-SPH) model to simulate sessile and transient droplets on rough hydrophobic and hydrophilic surfaces. PF-SPH allows modeling of free-surface flows without discretizing the air phase, which is achieved by imposing the surface tension and dynamic contact angles with pairwise interaction forces. We use the PF-SPH model to study the effect of surface roughness and microscopic contact angle on the effective contact angle and droplet dynamics. In the first part of this work, we investigate static contact angles of sessile droplets on different types of rough surfaces. We find that the effective static contact angles of Cassie and Wenzel droplets on a rough surface are greater than the corresponding microscale static contact angles. As a result, microscale hydrophobic rough surfaces also show effective hydrophobic behavior. On the other hand, microscale hydrophilic surfaces may be macroscopically hydrophilic or hydrophobic, depending on the type of roughness. We study the dependence of the transition between Cassie and Wenzel states on roughness and droplet size, which can be linked to the critical pressure for the given fluid-substrate combination. We observe good agreement between simulations and theoretical predictions. Finally, we study the impact of the roughness orientation (i.e., an anisotropic roughness) and surface inclination on droplet flow velocities. Simulations show that droplet flow velocities are lower if the surface roughness is oriented perpendicular to the flow direction. If the predominant elements of surface roughness are in alignment with the flow direction, the flow velocities increase compared to smooth surfaces, which can be attributed to the decrease in fluid-solid contact area similar to the lotus effect. We demonstrate that classical linear scaling relationships between Bond and capillary numbers for droplet flow on flat surfaces also hold for flow on rough surfaces.

Developing Coastal Surface Roughness Maps Using ASTER and QuickBird Data Sources

NASA Technical Reports Server (NTRS)

Spruce, Joe; Berglund, Judith; Davis, Bruce

2006-01-01

This viewgraph presentation regards one element of a larger project on the integration of NASA science models and data into the Hazards U.S. Multi-Hazard (HAZUS-MH) Hurricane module for hurricane damage and loss risk assessment. HAZUS-MH is a decision support tool being developed by the National Institute of Building Sciences for the Federal Emergency Management Agency (FEMA). It includes the Hurricane Module, which employs surface roughness maps made from National Land Cover Data (NLCD) maps to estimate coastal hurricane wind damage and loss. NLCD maps are produced and distributed by the U.S. Geological Survey. This presentation discusses an effort to improve upon current HAZUS surface roughness maps by employing ASTER multispectral classifications with QuickBird "ground reference" imagery.

Large eddy simulation study of spanwise spacing effects on secondary flows in turbulent channel flow

NASA Astrophysics Data System (ADS)

Aliakbarimiyanmahaleh, Mohammad; Anderson, William

2015-11-01

The structure of turbulent flow over a complex topography composed of streamwise-aligned rows of cones with varying spanwise spacing, s is studied with large-eddy simulation (LES). Similar to the experimental study of Vanderwel and Ganapathisubramani, 2015: J. Fluid Mech., we investigate the relationship between secondary flow and s, for 0 . 25 <= s / δ <= 5 . For cases with s / δ > 2 , domain-scale rollers freely exist. These had previously been called ``turbulent secondary flows'' (Willingham et al., 2014: Phys. Fluids; Barros and Christensen, 2014: J. Fluid Mech.; Anderson et al., 2015: J. Fluid Mech.), but closer inspection of the statistics indicates these are a turbulent tertiary flow: they only remain ``anchored'' to the conical roughness elements for s / δ > 2 . For s / δ < 2 , turbulent tertiary flows are prevented from occupying the domain by virtue of proximity to adjacent, counter-rotating tertiary flows. Turbulent secondary flows are associated with the conical roughness elements. These turbulent secondary flows emanate from individual conical topographic elements and set the roughness sublayer depth. The turbulent secondary flows remain intact for large and small spacing. For s / δ < 1 , a mean tertiary flow is not present. This work was supported by the Air Force Office of Sci. Research, Young Inv. Program (PM: Dr. R. Ponnoppan and Ms. E. Montomery) under Grant # FA9550-14-1-0394. Computational resources were provided by the Texas Adv. Comp. Center at the Univ. of Texas.

Reconstructing photorealistic 3D models from image sequence using domain decomposition method

NASA Astrophysics Data System (ADS)

Xiong, Hanwei; Pan, Ming; Zhang, Xiangwei

2009-11-01

In the fields of industrial design, artistic design and heritage conservation, physical objects are usually digitalized by reverse engineering through some 3D scanning methods. Structured light and photogrammetry are two main methods to acquire 3D information, and both are expensive. Even if these expensive instruments are used, photorealistic 3D models are seldom available. In this paper, a new method to reconstruction photorealistic 3D models using a single camera is proposed. A square plate glued with coded marks is used to place the objects, and a sequence of about 20 images is taken. From the coded marks, the images are calibrated, and a snake algorithm is used to segment object from the background. A rough 3d model is obtained using shape from silhouettes algorithm. The silhouettes are decomposed into a combination of convex curves, which are used to partition the rough 3d model into some convex mesh patches. For each patch, the multi-view photo consistency constraints and smooth regulations are expressed as a finite element formulation, which can be resolved locally, and the information can be exchanged along the patches boundaries. The rough model is deformed into a fine 3d model through such a domain decomposition finite element method. The textures are assigned to each element mesh, and a photorealistic 3D model is got finally. A toy pig is used to verify the algorithm, and the result is exciting.

Effects of ice crystal surface roughness and air bubble inclusions on cirrus cloud radiative properties from remote sensing perspective

NASA Astrophysics Data System (ADS)

Tang, Guanglin; Panetta, R. Lee; Yang, Ping; Kattawar, George W.; Zhai, Peng-Wang

2017-07-01

We study the combined effects of surface roughness and inhomogeneity on the optical scattering properties of ice crystals and explore the consequent implications to remote sensing of cirrus cloud properties. Specifically, surface roughness and inhomogeneity are added to the Moderate Resolution Imaging Spectroradiometer (MODIS) collection 6 (MC6) cirrus cloud particle habit model. Light scattering properties of the new habit model are simulated using a modified version of the Improved Geometric Optics Method (IGOM). Both inhomogeneity and surface roughness affect the single scattering properties significantly. In visible bands, inhomogeneity and surface roughness both tend to smooth the phase function and eliminate halos and the backscattering peak. The asymmetry parameter varies with the degree of surface roughness following a U shape - decreases and then increases - with a minimum at around 0.15, whereas it decreases monotonically with the air bubble volume fraction. Air bubble inclusions significantly increase phase matrix element -P12 for scattering angles between 20°-120°, whereas surface roughness has a much weaker effect, increasing -P12 slightly from 60°-120°. Radiative transfer simulations and cirrus cloud property retrievals are conducted by including both the factors. In terms of surface roughness and air bubble volume fraction, retrievals of cirrus cloud optical thickness or the asymmetry parameter using solar bands show similar patterns of variation. Polarimetric simulations using the MC6 cirrus cloud particle habit model are shown to be more consistent with observations when both surface roughness and inhomogeneity are simultaneously considered.

Introduction of pre-etch deposition techniques in EUV patterning

NASA Astrophysics Data System (ADS)

Xiang, Xun; Beique, Genevieve; Sun, Lei; Labonte, Andre; Labelle, Catherine; Nagabhirava, Bhaskar; Friddle, Phil; Schmitz, Stefan; Goss, Michael; Metzler, Dominik; Arnold, John

2018-04-01

The thin nature of EUV (Extreme Ultraviolet) resist has posed significant challenges for etch processes. In particular, EUV patterning combined with conventional etch approaches suffers from loss of pattern fidelity in the form of line breaks. A typical conventional etch approach prevents the etch process from having sufficient resist margin to control the trench CD (Critical Dimension), minimize the LWR (Line Width Roughness), LER (Line Edge Roughness) and reduce the T2T (Tip-to-Tip). Pre-etch deposition increases the resist budget by adding additional material to the resist layer, thus enabling the etch process to explore a wider set of process parameters to achieve better pattern fidelity. Preliminary tests with pre-etch deposition resulted in blocked isolated trenches. In order to mitigate these effects, a cyclic deposition and etch technique is proposed. With optimization of deposition and etch cycle time as well as total number of cycles, it is possible to open the underlying layers with a beneficial over etch and simultaneously keep the isolated trenches open. This study compares the impact of no pre-etch deposition, one time deposition and cyclic deposition/etch techniques on 4 aspects: resist budget, isolated trench open, LWR/LER and T2T.

A marker of animal-vegetal polarity in the egg of the sea urchin Paracentrotus lividus. The pigment band.

PubMed

Sardet, C; Chang, P

1985-09-01

We have examined the subequatorial accumulation of pigment granules (the so-called 'pigment band') in the egg of the sea urchin Paracentrotus lividus, which constitutes an unambiguous marker of animal-vegetal polarity. Most of the reddish pigment granules are situated at the periphery of the egg. They exhibit occasional saltatory movements and can aggregate into large patches. Pigment granules are retained as a band in the isolated cortex when the egg surface complex is isolated by shearing eggs attached to polylysine-coated surfaces with calcium-free isotonic solutions. Pigment granules remain as the main vesicular component of fertilized egg cortices or of unfertilized egg cortices perfused with calcium to provoke cortical granule exocytosis. They may be anchored to the isolated cortex through associations with the plasma membrane and with an extensive subsurface network of rough endoplasmic reticulum (rough ER). Pigment granules contain antimonate-precipitable calcium and, in this respect and many others, resemble acidic vesicles recently identified in the cortex of unpigmented sea urchin eggs. We discuss the similarities observed between granules and acidic vesicles in various urchin egg species and their possible functions.

Flow resistance in open channels with fixed movable bed

USGS Publications Warehouse

Simoes, Francisco J.

2010-01-01

In spite of an increasingly large body of research by many investigators, accurate quantitative prediction of open channel flow resistance remains a challenge. In general, the relations between the elements influencing resistance (turbulence, boundary roughness, and channel shape features, such as discrete obstacles, bars, channel curvature, recirculation areas, secondary circulation, etc.) and mean flow variables are complex and poorly understood. This has resulted in numerous approaches to compute friction using many and diverse variables and equally diverse prescriptions for their use. In this paper, a new resistance law for surface (grain) resistance, the resistance due to the flow viscous effects on the channel boundary roughness elements, is presented for the cases of flow in the transition (5 < Re* <70) and fully rough (Re* ≥ 70) turbulent flow regimes, where Re* is the Reynolds number based on shear velocity and sediment particle mean diameter. It is shown that the new law is sensitive to bed movement without requiring previous knowledge of sediment transport conditions. Comparisons between computation and measurements, as well as comparisons with other well-known existing roughness predictors, are presented to demonstrate its accuracy and range of application. It is shown that the method accurately predicts total friction losses in channels and natural rivers with plane beds, regardless of sediment transport conditions. This work is useful to hydraulic engineers involved with the derivation of depth-discharge relations in open channel flow and with the estimation of sediment transport rates for the case of bedload transport.

Root anatomy and element distribution vary between two Salix caprea isolates with different Cd accumulation capacities

PubMed Central

Vaculík, Marek; Konlechner, Cornelia; Langer, Ingrid; Adlassnig, Wolfram; Puschenreiter, Markus; Lux, Alexander; Hauser, Marie-Theres

2012-01-01

The understanding of the influence of toxic elements on root anatomy and element distribution is still limited. This study describes anatomical responses, metal accumulation and element distribution of rooted cuttings of Salix caprea after exposure to Cd and/or Zn. Differences in the development of apoplastic barriers and tissue organization in roots between two distinct S. caprea isolates with divergent Cd uptake and accumulation capacities in leaves might reflect an adaptive predisposition based on different natural origins. Energy-dispersive X-ray spectroscopy (EDX) revealed that Cd and Zn interfered with the distribution of elements in a tissue- and isolate-specific manner. Zinc, Ca, Mg, Na and Si were enriched in the peripheral bark, K and S in the phloem and Cd in both vascular tissues. Si levels were lower in the superior Cd translocator. Since the cuttings originated from stocks isolated from polluted and unpolluted sites we probably uncovered different strategies against toxic elements. PMID:22325439

Rough surface reconstruction for ultrasonic NDE simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Choi, Wonjae; Shi, Fan; Lowe, Michael J. S.

2014-02-18

The reflection of ultrasound from rough surfaces is an important topic for the NDE of safety-critical components, such as pressure-containing components in power stations. The specular reflection from a rough surface of a defect is normally lower than it would be from a flat surface, so it is typical to apply a safety factor in order that justification cases for inspection planning are conservative. The study of the statistics of the rough surfaces that might be expected in candidate defects according to materials and loading, and the reflections from them, can be useful to develop arguments for realistic safety factors.more » This paper presents a study of real rough crack surfaces that are representative of the potential defects in pressure-containing power plant. Two-dimensional (area) values of the height of the roughness have been measured and their statistics analysed. Then a means to reconstruct model cases with similar statistics, so as to enable the creation of multiple realistic realizations of the surfaces, has been investigated, using random field theory. Rough surfaces are reconstructed, based on a real surface, and results for these two-dimensional descriptions of the original surface have been compared with those from the conventional model based on a one-dimensional correlation coefficient function. In addition, ultrasonic reflections from them are simulated using a finite element method.« less

Modeling of surface roughness effects on glaze ice accretion

NASA Technical Reports Server (NTRS)

Hansman, R. John, Jr.; Yamaguchi, Keiko; Berkowitz, Brian M.; Potapczuk, Mark

1990-01-01

A series of experimental investigations focused on studying the cause and effect of roughness on accreting glaze ice surfaces were conducted. Detailed microvideo observations were made of glaze ice accretions on 1 to 4 inch diameter cylinders in three icing wind tunnels (the Data Products of New England six inch test facility, the NASA Lewis Icing Research Tunnel, and the B. F. Goodrich Ice Protection Research Facility). Infrared thermal video recordings were made of accreting ice surfaces in the Goodrich facility. Distinct zones of surface water behavior were observed; a smooth wet zone in the stagnation region with a uniform water film; a rough zone where surface tension effects caused coalescence of surface water into stationary beads; a horn zone where roughness elements grow into horn shapes; a runback zone where surface water ran back as rivulets; and a dry zone where rime feathers formed. The location of the transition from the smooth to the rough zone was found to migrate with time towards the stagnation point. The behavior of the transition appeared to be controlled by boundary layer transition and bead formation mechanisms at the interface between the smooth and rough zones. Regions of wet ice growth and enhanced heat transfer were clearly visible in the infrared video recordings of glaze ice surfaces. A simple multi-zone modification to the current glaze ice accretion model was proposed to include spatial variability in surface roughness.

Macrolide resistance gene erm(TR) and erm(TR)-carrying genetic elements in Streptococcus agalactiae: characterization of ICESagTR7, a new composite element containing IMESp2907.

PubMed

Mingoia, Marina; Morici, Eleonora; Marini, Emanuela; Brenciani, Andrea; Giovanetti, Eleonora; Varaldo, Pietro E

2016-03-01

The objective of this study was to investigate macrolide-resistant Streptococcus agalactiae isolates harbouring erm(TR), an erm(A) gene subclass, with emphasis on their erm(TR)-carrying genetic elements. Four erm(TR)-carrying elements have been described to date: three closely related (ICE10750-RD.2, Tn1806 and ICESp1108) in Streptococcus pyogenes, Streptococcus pneumoniae and S. pyogenes, respectively; and one completely different (IMESp2907, embedded in ICESp2906 to form ICESp2905) in S. pyogenes. Seventeen macrolide-resistant erm(TR)-positive S. agalactiae isolates were phenotypically and genotypically characterized. Their erm(TR)-carrying elements were explored by analysing the distinctive recombination genes of known erm(TR)-carrying integrative and conjugative elements (ICEs) and by PCR mapping. The new genetic context and organization of IMESp2907 in S. agalactiae were explored using several experimental procedures and in silico analyses. Five isolates harboured ICE10750-RD.2/Tn1806, five isolates harboured ICESp1108 and five isolates bore unknown erm(TR)-carrying elements. The remaining two isolates, exhibiting identical serotypes and pulsotypes, harboured IMESp2907 in a new genetic environment, which was further investigated in one of the two isolates, SagTR7. IMESp2907 was circularizable in S. agalactiae, as described in S. pyogenes. The new IMESp2907 junctions were identified based on its site-specific integration; the att sites were almost identical to those in S. pyogenes. In strain SagTR7, erm(TR)-carrying IMESp2907 was embedded in an erm(TR)-less internal element related to ICE10750-RD.2/Tn1806, which, in turn, was embedded in an ICESde3396-like element. The resulting whole ICE, ICESagTR7 (∼129 kb), was integrated into the chromosome downstream of the rplL gene, and was excisable in circular form and transferable by conjugation. This is the first study exploring erm(TR)-carrying genetic elements in S. agalactiae. © The Author 2015. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Prevalence of O1/K1- and O2/K3-Reactive Actinobacillus suis in Healthy and Diseased Swine

PubMed Central

Slavić, ĐurĐa; Toffner, Tania L.; Monteiro, Mario A.; Perry, Malcolm B.; MacInnes, Janet I.

2000-01-01

A cell surface antigen-typing system was devised for the swine pathogen Actinobacillus suis and used to examine the prevalence of different lipopolysaccharide (O) types in healthy and diseased pigs. The strains examined in this study were isolated from a variety of locations in Canada and from Kansas. Lipopolysaccharide preparations of 151 isolates of A. suis were characterized by immunoblotting using polyclonal antisera generated to strains SO4 (O1/K1), H89-1173 (O2/K3), and VSB 3714, a rough strain. Approximately 54% (62 of 114) of A. suis isolates from diseased pigs, all (11 of 11) isolates from healthy pigs, and all (4 of 4) reference strains reacted with O1/K1 antiserum. More than 80% (18 of 22) of A. suis strains used for bacterin production and approximately 41% (47 of 114) of isolates from diseased pigs bound O2/K3 antiserum. One isolate appeared to be rough, and five were untypeable. O1/K1- and O2/K3-reactive strains were equally prevalent in Kansas, whereas O2/K3-reactive strains were more common in Québec and western Canada and O1/K1 strains were most common in Ontario. The fact that virtually all of the strains submitted for bacterin production were O2/K3-reactive strains is consistent with the notion that these strains may be more virulent than O1/K1 strains; alternatively, this may reflect geographic or other biases. In addition, we observed cross-reactivity between A. suis cell surface antigens and swine antisera to several other important pathogens. This finding may explain why previous attempts to develop a simple serodiagnostic test for A. suis have been unsuccessful. PMID:11015398

Physical modeling of the atmospheric boundary layer in the UNH Flow Physics Facility

NASA Astrophysics Data System (ADS)

Taylor-Power, Gregory; Gilooly, Stephanie; Wosnik, Martin; Klewicki, Joe; Turner, John

2016-11-01

The Flow Physics Facility (FPF) at UNH has test section dimensions W =6.0m, H =2.7m, L =72m. It can achieve high Reynolds number boundary layers, enabling turbulent boundary layer, wind energy and wind engineering research with exceptional spatial and temporal instrument resolution. We examined the FPF's ability to experimentally simulate different types of the atmospheric boundary layer (ABL) using upstream roughness arrays. The American Society for Civil Engineers defines standards for simulating ABLs for different terrain types, from open sea to dense city areas (ASCE 49-12). The standards require the boundary layer to match a power law shape, roughness height, and power spectral density criteria. Each boundary layer type has a corresponding power law exponent and roughness height. The exponent and roughness height both increase with increasing roughness. A suburban boundary layer was chosen for simulation and a roughness element fetch was created. Several fetch lengths were experimented with and the resulting boundary layers were measured and compared to standards in ASCE 49-12: Wind Tunnel Testing for Buildings and Other Structures. Pitot tube and hot wire anemometers were used to measure average and fluctuating flow characteristics. Velocity profiles, turbulence intensity and velocity spectra were found to compare favorably.

Flu Diagnosis System Using Jaccard Index and Rough Set Approaches

NASA Astrophysics Data System (ADS)

Efendi, Riswan; Azah Samsudin, Noor; Mat Deris, Mustafa; Guan Ting, Yip

2018-04-01

Jaccard index and rough set approaches have been frequently implemented in decision support systems with various domain applications. Both approaches are appropriate to be considered for categorical data analysis. This paper presents the applications of sets operations for flu diagnosis systems based on two different approaches, such as, Jaccard index and rough set. These two different approaches are established using set operations concept, namely intersection and subset. The step-by-step procedure is demonstrated from each approach in diagnosing flu system. The similarity and dissimilarity indexes between conditional symptoms and decision are measured using Jaccard approach. Additionally, the rough set is used to build decision support rules. Moreover, the decision support rules are established using redundant data analysis and elimination of unclassified elements. A number data sets is considered to attempt the step-by-step procedure from each approach. The result has shown that rough set can be used to support Jaccard approaches in establishing decision support rules. Additionally, Jaccard index is better approach for investigating the worst condition of patients. While, the definitely and possibly patients with or without flu can be determined using rough set approach. The rules may improve the performance of medical diagnosis systems. Therefore, inexperienced doctors and patients are easier in preliminary flu diagnosis.

Proceedings of the U.S. Air Force and The Federal Republic of Germany Data Exchange Agreement Meeting (9th), Viscous and Interacting Flow Field Effects Held at Silver Spring, Maryland on 9-10 May 1984,

DTIC Science & Technology

1984-08-01

found in References 1-3. 2. Modeling of Roughness Effects on Turbulent Flow In turbulent flow analysis , use of time-averaged equations leads to the...eddy viscosity and the mixing length which are important parameters used in current algebraic modeling of the turbulence shear term. Two different ...surfaces with three-dimensional (distributed) roughness elements. Calculations using the present model have been compared with experimental data from

A 2.5D finite element and boundary element model for the ground vibration from trains in tunnels and validation using measurement data

NASA Astrophysics Data System (ADS)

Jin, Qiyun; Thompson, David J.; Lurcock, Daniel E. J.; Toward, Martin G. R.; Ntotsios, Evangelos

2018-05-01

A numerical model is presented for the ground-borne vibration produced by trains running in tunnels. The model makes use of the assumption that the geometry and material properties are invariant in the axial direction. It is based on the so-called two-and-a-half dimensional (2.5D) coupled Finite Element and Boundary Element methodology, in which a two-dimensional cross-section is discretised into finite elements and boundary elements and the third dimension is represented by a Fourier transform over wavenumbers. The model is applied to a particular case of a metro line built with a cast-iron tunnel lining. An equivalent continuous model of the tunnel is developed to allow it to be readily implemented in the 2.5D framework. The tunnel structure and the track are modelled using solid and beam finite elements while the ground is modelled using boundary elements. The 2.5D track-tunnel-ground model is coupled with a train consisting of several vehicles, which are represented by multi-body models. The response caused by the passage of a train is calculated as the sum of the dynamic component, excited by the combined rail and wheel roughness, and the quasi-static component, induced by the constant moving axle loads. Field measurements have been carried out to provide experimental validation of the model. These include measurements of the vibration of the rail, the tunnel invert and the tunnel wall. In addition, simultaneous measurements were made on the ground surface above the tunnel. Rail roughness and track characterisation measurements were also made. The prediction results are compared with measured vibration obtained during train passages, with good agreement.

Snow snake performance monitoring.

DOT National Transportation Integrated Search

2008-12-01

A recent study, Three-Dimensional Roughness Elements for Snow Retention (FHWA-WY-06/04F) (Tabler 2006), demonstrated : positive evidence for the effectiveness of Snow Snakes, a new type of snow fence suitable for use within the highway right-of...

Culvert roughness elements for native Utah fish passage : phase II.

DOT National Transportation Integrated Search

2012-04-01

Native fishes have become an increasingly important concern when designing fish passable culverts. Many operational culverts constrict waterways which increase velocities and prevent upstream passage of small fish species. The current method to ensur...

The quantitative analysis of silicon carbide surface smoothing by Ar and Xe cluster ions

NASA Astrophysics Data System (ADS)

Ieshkin, A. E.; Kireev, D. S.; Ermakov, Yu. A.; Trifonov, A. S.; Presnov, D. E.; Garshev, A. V.; Anufriev, Yu. V.; Prokhorova, I. G.; Krupenin, V. A.; Chernysh, V. S.

2018-04-01

The gas cluster ion beam technique was used for the silicon carbide crystal surface smoothing. The effect of processing by two inert cluster ions, argon and xenon, was quantitatively compared. While argon is a standard element for GCIB, results for xenon clusters were not reported yet. Scanning probe microscopy and high resolution transmission electron microscopy techniques were used for the analysis of the surface roughness and surface crystal layer quality. The gas cluster ion beam processing results in surface relief smoothing down to average roughness about 1 nm for both elements. It was shown that xenon as the working gas is more effective: sputtering rate for xenon clusters is 2.5 times higher than for argon at the same beam energy. High resolution transmission electron microscopy analysis of the surface defect layer gives values of 7 ± 2 nm and 8 ± 2 nm for treatment with argon and xenon clusters.

Some Insights on Roughness Induced Transition and Control from DNS and Experiments

NASA Astrophysics Data System (ADS)

Suryanarayanan, Saikishan; Ibitayo, Ifeoluwa; Goldstein, David; Brown, Garry

2016-11-01

We study the receptivity and subsequent evolution of an initially laminar flat boundary layer on a flat plate to single and multiple discrete roughness elements (DRE) using a combination of immersed boundary DNS and water channel flow visualization experiments. We examine the transition caused by a single DRE and demonstrate the possibility of suppressing it by an appropriately designed second DRE in both DNS and experiments. The different phases of transition are identified and the roles of Reynolds numbers based on roughness height and boundary layer thickness are investigated. The underlying mechanisms in the observed transition and its control are understood by examining detailed vorticity flux balances. Connections are also made to recent developments in transient growth and streak instability. A unified picture is sought from a parametric study of different DRE dimensions and orientations. The potential applicability of the observations and understanding derived from this study to controlling transition caused by design and environmental roughness over aircraft wings is discussed. Supported by AFOSR # FA9550-15-1-0345.

Roughness Based Crossflow Transition Control: A Computational Assessment

NASA Technical Reports Server (NTRS)

Li, Fei; Choudhari, Meelan M.; Chang, Chau-Lyan; Streett, Craig L.; Carpenter, Mark H.

2009-01-01

A combination of parabolized stability equations and secondary instability theory has been applied to a low-speed swept airfoil model with a chord Reynolds number of 7.15 million, with the goals of (i) evaluating this methodology in the context of transition prediction for a known configuration for which roughness based crossflow transition control has been demonstrated under flight conditions and (ii) of analyzing the mechanism of transition delay via the introduction of discrete roughness elements (DRE). Roughness based transition control involves controlled seeding of suitable, subdominant crossflow modes, so as to weaken the growth of naturally occurring, linearly more unstable crossflow modes. Therefore, a synthesis of receptivity, linear and nonlinear growth of stationary crossflow disturbances, and the ensuing development of high frequency secondary instabilities is desirable to understand the experimentally observed transition behavior. With further validation, such higher fidelity prediction methodology could be utilized to assess the potential for crossflow transition control at even higher Reynolds numbers, where experimental data is currently unavailable.

The Effects of Surface Roughness on the NEAR XRS Elemental Results: Monte-Carlo Modeling

NASA Technical Reports Server (NTRS)

Lin, Lucy F.; Nittler, Larry R.

2011-01-01

The objective of the NEAR-Shoemaker X-ray Gamma-Ray Spec1roscopy ("XGRS") investigation was to determine the elemental composition of the near-Earth asteroid 433 Eros. The X-ray Spectrometer (XRS) system measured the characteristic fluorescence of six major elements (Mg, Al, Si, S, Ca, Fe) in the 1-10 keV energy range excited by the interaction of solar X-rays with the upper 100 microns of the surface of 433 Eros. Various investigators, using both laboratory experiments and computer simulations have established that X-ray fluorescent line ratios can be influenced by small-scale surface roughness at high incidence or emission angles. The effect on the line ratio is specific to the geometry, excitation spectrum, and composition involved, In general, however, the effect is only substantial for ratios of lines with a significant energy difference between them: Fe/Si and Ca/Si are much more likely to be affected than AI/Si or Mg/Si. We apply a Monte-Carlo code to the specific geometry and spectrum of a major NEAR XRS solar flare observation, using an H chondrite composition as the substrate. The seventeen most abundant elements were included in the composition model, from oxygen to titanium.

The impact of climate and composition on playa surface roughness: Investigation of atmospheric mineral dust emission mechanisms

NASA Astrophysics Data System (ADS)

Tollerud, H. J.; Fantle, M. S.

2011-12-01

Atmospheric mineral dust has a wide range of impacts, including the transport of elements in geochemical cycles, health hazards from small particles, and climate forcing via the reflection of sunlight from dust particles. In particular, the mineral dust component of climate forcing is one of the most uncertain elements in the IPCC climate forcing summary. Mineral dust is also an important component of geochemical cycles. For instance, dust inputs to the ocean potentially affect the iron cycle by stimulating natural iron fertilization, which could then modify climate via the biological pump. Also dust can transport nutrients over long distances and fertilize nutrient-poor regions, such as island ecosystems or the Amazon rain forest. However, there are still many uncertainties in quantifying dust emissions from source regions. One factor that influences dust emission is surface roughness and texture, since a weak, unconsolidated surface texture is more easily ablated by wind than a strong, hard crust. We are investigating the impact of processes such as precipitation, groundwater evaporation, and wind on surface roughness in a playa dust source region. We find that water has a significant influence on surface roughness. We utilize ESA's Advanced Synthetic Aperture Radar (ASAR) instrument to measure roughness in the playa. A map of roughness indicates where the playa surface is smooth (on the scale of centimeters) and potentially very strong, and where it is rough and might be more sensitive to disturbance. We have analyzed approximately 40 ASAR observations of the Black Rock Desert from 2007-2011. In general, the playa is smoother and more variable over time relative to nearby areas. There is also considerable variation within the playa. While the playa roughness maps changed significantly between summers and between observations during the winters, over the course of each summer, the playa surface maintained essentially the same roughness pattern. This suggests that there were no active processes during the summers that changed surface roughness. Images from NASA's MODIS instrument (1640 nm, band 6) delineate winter flooding on the playa. Areas of water in the winter tend to be smoother in the summer. In particular, a smooth area of the play in summer 2010 aligns very closely with ponded water in February 2010. This indicates that standing water disrupts the playa surface, reducing roughness. We also compared the distribution of surface roughness across the playa to playa composition. X-ray diffraction (XRD) of samples from the Black Rock Desert demonstrates that the playa surface is composed of approximately 30% quartz, 45% clays, 10% calcite, and 5% halite. Calcite and halite concentrations vary significantly between samples. We produced a map of calcite concentration in the Black Rock Desert based on hyperspectral data from NASA's EO-1 Hyperion instrument. We find that calcite concentrations are higher in smooth areas that have been inundated by water. Without an understanding of the surface processes associated with dust emission, it is difficult to model atmospheric dust, especially in the past or future when there is much less data for an empirical dust model.

Eggshell structure in Caiman latirostris eggs improves embryo survival during nest inundation.

PubMed

Cedillo-Leal, César; Simoncini, Melina S; Leiva, Pamela M L; Larriera, Alejandro; Lang, Jeffrey W; Piña, Carlos I

2017-05-17

Egg inundation often results in poor hatching success in crocodylians. However, how tolerant eggs are to submergence, and/or how eggshell ultrastructure may affect embryo survival when inundated, are not well understood. In this study, our objective was to determine if embryo survival in Caiman latirostris is affected by eggshell surface roughness, when eggs are submerged under water. Tolerance to inundation was tested early (day 30) versus late (day 60) in development, using eight clutches (four per time treatments), subdivided into four groups: ( N = 9 per clutch per treatment; 9 × 4 = 36 eggs per group). 'Rough' eggshell represented the natural, unmodified eggshell surface structure. 'Smooth' eggshell surface structure was created by mechanically sanding the natural rough surface to remove surface columnar elements and secondary layer features, e.g. irregularities that result in 'roughness'. When inundated by submerging eggs under water for 10 h at day 30, 'smooth' eggshell structure resulted in more than twice as many dead embryos (16 versus 6, smooth versus rough; N = 36), and fewer than half as many healthy embryos (6 versus 13, smooth versus rough, respectively; N = 36). By contrast, at day 60, inundation resulted in very low hatching success, regardless of eggshell surface structure. Only two hatchlings survived the inundation, notably in the untreated group with intact, rough eggshells. Inundation produced a high rate of malformations (58% at day 30), but did not affect hatchling size. Our results indicate that eggshell roughness enhances embryo survival when eggs are inundated early in development, but not late in development. Apparently, the natural surface 'roughness' entraps air bubbles at the eggshell surface during inundation, thereby facilitating gas exchange through the eggshell even when the egg is submerged under water. © 2017 The Author(s).

Shock Isolation Elements Testing for High Input Loadings. Volume II. Foam Shock Isolation Elements.

DTIC Science & Technology

SHOCK ABSORBERS ), (*GUIDED MISSILE SILOS, SHOCK ABSORBERS ), (*EXPANDED PLASTICS, (*SHOCK(MECHANICS), REDUCTION), TEST METHODS, SHOCK WAVES, STRAIN(MECHANICS), LOADS(FORCES), MATHEMATICAL MODELS, NUCLEAR EXPLOSIONS, HARDENING.

Shock Isolation Elements Testing for High Input Loadings. Volume III. Mechanical Shock Isolation Elements.

DTIC Science & Technology

SHOCK ABSORBERS ), (*GUIDED MISSILE SILOS, SHOCK ABSORBERS ), (*SPRINGS, (*SHOCK(MECHANICS), REDUCTION), TORSION BARS, ELASTOMERS, DAMPING, EQUATIONS OF MOTION, MODEL TESTS, TEST METHODS, NUCLEAR EXPLOSIONS, HARDENING.

High frequency, multi-axis dynamic stiffness analysis of a fractionally damped elastomeric isolator using continuous system theory

NASA Astrophysics Data System (ADS)

Fredette, Luke; Singh, Rajendra

2017-02-01

A spectral element approach is proposed to determine the multi-axis dynamic stiffness terms of elastomeric isolators with fractional damping over a broad range of frequencies. The dynamic properties of a class of cylindrical isolators are modeled by using the continuous system theory in terms of homogeneous rods or Timoshenko beams. The transfer matrix type dynamic stiffness expressions are developed from exact harmonic solutions given translational or rotational displacement excitations. Broadband dynamic stiffness magnitudes (say up to 5 kHz) are computationally verified for axial, torsional, shear, flexural, and coupled stiffness terms using a finite element model. Some discrepancies are found between finite element and spectral element models for the axial and flexural motions, illustrating certain limitations of each method. Experimental validation is provided for an isolator with two cylindrical elements (that work primarily in the shear mode) using dynamic measurements, as reported in the prior literature, up to 600 Hz. Superiority of the fractional damping formulation over structural or viscous damping models is illustrated via experimental validation. Finally, the strengths and limitations of the spectral element approach are briefly discussed.

Advancing our understanding of the onshore propagation of tsunami bores over rough surfaces through numerical modeling

NASA Astrophysics Data System (ADS)

Marras, S.; Suckale, J.; Eguzkitza, B.; Houzeaux, G.; Vázquez, M.; Lesage, A. C.

2016-12-01

The propagation of tsunamis in the open ocean has been studied in detail with many excellent numerical approaches available to researchers. Our understanding of the processes that govern the onshore propagation of tsunamis is less advanced. Yet, the reach of tsunamis on land is an important predictor of the damage associated with a given event, highlighting the need to investigate the factors that govern tsunami propagation onshore. In this study, we specifically focus on understanding the effect of bottom roughness at a variety of scales. The term roughness is to be understood broadly, as it represents scales ranging from small features like rocks, to vegetation, up to the size of larger structures and topography. In this poster, we link applied mathematics, computational fluid dynamics, and tsunami physics to analyze the small scales features of coastal hydrodynamics and the effect of roughness on the motion of tsunamis as they run up a sloping beach and propagate inland. We solve the three-dimensional Navier-Stokes equations of incompressible flows with free surface, which is tracked by a level set function in combination with an accurate re-distancing scheme. We discretize the equations via linear finite elements for space approximation and fully implicit time integration. Stabilization is achieved via the variational multiscale method whereas the subgrid scales for our large eddy simulations are modeled using a dynamically adaptive Smagorinsky eddy viscosity. As the geometrical characteristics of roughness in this study vary greatly across different scales, we implement a scale-dependent representation of the roughness elements. We model the smallest sub-grid scale roughness features by the use of a properly defined law of the wall. Furthermore, we utilize a Manning formula to compute the shear stress at the boundary. As the geometrical scales become larger, we resolve the geometry explicitly and compute the effective volume drag introduced by large scale immersed bodies. This study is a necessary step to verify and validate our model before proceeding further into the simulation of sediment transport in turbulent free surface flows. The simulation of such problems requires a space and time-dependent viscosity to model the effect of solid bodies transported by the incoming flow on onshore tsunami propagation.

Lipopolysaccharide variation in Coxiella burnetti: intrastrain heterogeneity in structure and antigenicity.

PubMed Central

Hackstadt, T; Peacock, M G; Hitchcock, P J; Cole, R L

1985-01-01

We isolated lipopolysaccharides (LPSs) from phase variants of Coxiella burnetii Nine Mile and compared the isolated LPS and C. burnetii cells by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and immunoblotting. The LPSs were found to be the predominant component which varied structurally and antigenically between virulent phase I and avirulent phase II. A comparison of techniques historically used to extract the phase I antigenic component revealed that the aqueous phase of phenol-water, trichloroacetic acid, and dimethyl sulfoxide extractions of phase I C. burnettii cells all contained phase I LPS, although the efficiency and specificity of extraction varied. Our studies provide additional evidence that phase variation in C. burnetii is analogous to the smooth-to-rough LPS variation of gram-negative enteric bacteria, with phase I LPS being equivalent to smooth LPS and phase II being equivalent to rough LPS. In addition, we identified a variant with a third LPS chemotype with appears to have a structural complexity intermediate to phase I and II LPSs. All three C. burnetii LPS contain a 2-keto-3-deoxyoctulosonic acid-like substance, heptose, and gel Limulus amoebocyte lysates in subnanogram amounts. The C. burnetii LPSs were nontoxic to chicken embryos at doses of over 80 micrograms per embryo, in contrast to Salmonella typhimurium smooth- and rough-type LPSs, which were toxic in nanogram amounts. Images PMID:3988339

Using FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) to isolate active regulatory DNA

PubMed Central

Simon, Jeremy M.; Giresi, Paul G.; Davis, Ian J.; Lieb, Jason D.

2013-01-01

Eviction or destabilization of nucleosomes from chromatin is a hallmark of functional regulatory elements of the eukaryotic genome. Historically identified by nuclease hypersensitivity, these regulatory elements are typically bound by transcription factors or other regulatory proteins. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) is an alternative approach to identify these genomic regions and has proven successful in a multitude of eukaryotic cell and tissue types. Cells or dissociated tissues are crosslinked briefly with formaldehyde, lysed, and sonicated. Sheared chromatin is subjected to phenol-chloroform extraction and the isolated DNA, typically encompassing 1–3% of the human genome, is purified. We provide guidelines for quantitative analysis by PCR, microarrays, or next-generation sequencing. Regulatory elements enriched by FAIRE display high concordance with those identified by nuclease hypersensitivity or ChIP, and the entire procedure can be completed in three days. FAIRE exhibits low technical variability, which allows its use in large-scale studies of chromatin from normal or diseased tissues. PMID:22262007

An experimental nonlinear low dynamic stiffness device for shock isolation

NASA Astrophysics Data System (ADS)

Francisco Ledezma-Ramirez, Diego; Ferguson, Neil S.; Brennan, Michael J.; Tang, Bin

2015-07-01

The problem of shock generated vibration is very common in practice and difficult to isolate due to the high levels of excitation involved and its transient nature. If not properly isolated it could lead to large transmitted forces and displacements. Typically, classical shock isolation relies on the use of passive stiffness elements to absorb energy by deformation and some damping mechanism to dissipate residual vibration. The approach of using nonlinear stiffness elements is explored in this paper, focusing in providing an isolation system with low dynamic stiffness. The possibilities of using such a configuration for a shock mount are studied experimentally following previous theoretical models. The model studied considers electromagnets and permanent magnets in order to obtain nonlinear stiffness forces using different voltage configurations. It is found that the stiffness nonlinearities could be advantageous in improving shock isolation in terms of absolute displacement and acceleration response when compared with linear elastic elements.

Culvert roughness elements for native Utah fish passage : phase I.

DOT National Transportation Integrated Search

2011-01-01

Laboratory flume testing of native Utah non-salmonid fish was performed to observe how : they use altered flow around obstacles to swim upstream. Three experimental setups included : a bare Plexiglas flume, vertical cylinders, and natural substrate p...

Institute for Aviation Research and Development Research Project

DTIC Science & Technology

1989-01-01

Symbolics Artificial Intelligence * Vision Systems * Finite Element Modeling ( NASTRAN ) * Aerodynamic Paneling (VSAERO) Projects: * Software...34Wall Functions for k and epsilon for Turbulent Flow Through Rough and Smooth Pipes," Eleventh International Symposium on Turbulence, October 17-19, 1988

AFRC2017-0037-01

NASA Image and Video Library

2017-02-17

The Swept Wing Laminar Flow test article, integrated to the underside of a NASA F-15, will examine the effectiveness of different configurations of small dots, called distributed roughness elements, to extend smooth, laminar airflow over a wing’s depth, reducing friction drag.

On the stability of von Kármán rotating-disk boundary layers with radial anisotropic surface roughness

NASA Astrophysics Data System (ADS)

Garrett, S. J.; Cooper, A. J.; Harris, J. H.; Özkan, M.; Segalini, A.; Thomas, P. J.

2016-01-01

We summarise results of a theoretical study investigating the distinct convective instability properties of steady boundary-layer flow over rough rotating disks. A generic roughness pattern of concentric circles with sinusoidal surface undulations in the radial direction is considered. The goal is to compare predictions obtained by means of two alternative, and fundamentally different, modelling approaches for surface roughness for the first time. The motivating rationale is to identify commonalities and isolate results that might potentially represent artefacts associated with the particular methodologies underlying one of the two modelling approaches. The most significant result of practical relevance obtained is that both approaches predict overall stabilising effects on type I instability mode of rotating disk flow. This mode leads to transition of the rotating-disk boundary layer and, more generally, the transition of boundary-layers with a cross-flow profile. Stabilisation of the type 1 mode means that it may be possible to exploit surface roughness for laminar-flow control in boundary layers with a cross-flow component. However, we also find differences between the two sets of model predictions, some subtle and some substantial. These will represent criteria for establishing which of the two alternative approaches is more suitable to correctly describe experimental data when these become available.

Simulation of thermal stress in Er2O3 and Al2O3 tritium penetration barriers by finite-element analysis

NASA Astrophysics Data System (ADS)

Ze, LIU; Guogang, YU; Anping, HE; Ling, WANG

2017-09-01

The physical vapor deposition method is an effective way to deposit Al2O3 and Er2O3 on 316L stainless steel substrates acting as tritium permeation barriers in a fusion reactor. The distribution of residual thermal stress is calculated both in Al2O3 and Er2O3 coating systems with planar and rough substrates using finite element analysis. The parameters influencing the thermal stress in the sputter process are analyzed, such as coating and substrate properties, temperature and Young’s modulus. This work shows that the thermal stress in Al2O3 and Er2O3 coating systems exhibit a linear relationship with substrate thickness, temperature and Young’s modulus. However, this relationship is inversed with coating thickness. In addition, the rough substrate surface can increase the thermal stress in the process of coating deposition. The adhesive strength between the coating and the substrate is evaluated by the shear stress. Due to the higher compressive shear stress, the Al2O3 coating has a better adhesive strength with a 316L stainless steel substrate than the Er2O3 coating. Furthermore, the analysis shows that it is a useful way to improve adhesive strength with increasing interface roughness.

Mass and charge transport in IPMC actuators with fractal interfaces

NASA Astrophysics Data System (ADS)

Chang, Longfei; Wu, Yucheng; Zhu, Zicai; Li, Heng

2016-04-01

Ionic Polymer-Metal Composite (IPMC) actuators have been attracting a growing interest in extensive applications, which consequently raises the demands on the accuracy of its theoretical modeling. For the last few years, rough landscape of the interface between the electrode and the ionic membrane of IPMC has been well-documented as one of the key elements to ensure a satisfied performance. However, in most of the available work, the interface morphology of IPMC was simplified with structural idealization, which lead to perplexity in the physical interpretation on its interface mechanism. In this paper, the quasi-random rough interface of IPMC was described with fractal dimension and scaling parameters. And the electro-chemical field was modeled by Poisson equation and a properly simplified Nernst-Planck equation set. Then, by simulation with Finite Element Method, a comprehensive analysis on he inner mass and charge transportation in IPMC actuators with different fractal interfaces was provided, which may be further adopted to instruct the performance-oriented interface design for ionic electro-active actuators. The results also verified that rough interface can impact the electrical and mechanical response of IPMC, not only from the respect of the real surface increase, but also from mass distribution difference caused by the complexity of the micro profile.

DNA methylase activity as a marker for the presence of a family of phage-like elements conferring efflux-mediated macrolide resistance in streptococci.

PubMed

Figueiredo, T A; Aguiar, S I; Melo-Cristino, J; Ramirez, M

2006-11-01

Recently, two related chimeric genetic elements (Tn1207.3 and Phi10394.4) were shown to carry the macrolide efflux gene mef in Streptococcus pyogenes (group A streptococci [GAS]). The dissemination of elements belonging to the Tn1207.3/Phi10394.4 family in recent isolates of GAS, Streptococcus dysgalactiae subsp. equisimilis, Streptococcus pneumoniae, and Streptococcus agalactiae recovered in Portugal was surveyed. In total, 149 GAS, 18 S. pneumoniae, 4 S. dysgalactiae subsp. equisimilis, and 5 S. agalactiae isolates from infections, presenting the M phenotype of macrolide resistance and containing the mef gene, were screened for the presence of Tn1207.3/Phi10394.4 by PCR targeting open reading frames (ORFs) specific for these related elements. All the GAS isolates tested and one of the S. dysgalactiae subsp. equisimilis isolates carried Tn1207.3. However, neither of these elements was found in the isolates of the other streptococcal species. It was also noted that the DNAs of the isolates carrying Tn1207.3 were resistant to cleavage by the endonuclease SmaI. Cloning and expression of ORF12 of Tn1207.3 in Escherichia coli showed that it encoded a methyltransferase that rendered DNA refractory to cleavage by SmaI (M.Spy10394I). Using this characteristic as a marker for the presence of the Tn1207.3/Phi10394.4 family, we reviewed the literature and concluded that these genetic elements are widely distributed among tetracycline-susceptible GAS isolates presenting the M phenotype from diverse geographic origins and may have played an important role in the dissemination of macrolide resistance in this species.

Modeling Of Spontaneous Multiscale Roughening And Branching of Ruptures Propagating On A Slip-Weakening Frictional Fault

NASA Astrophysics Data System (ADS)

Elbanna, A. E.

2013-12-01

Numerous field and experimental observations suggest that faults surfaces are rough at multiple scales and tend to produce a wide range of branch sizes ranging from micro-branching to large scale secondary faults. The development and evolution of fault roughness and branching is believed to play an important role in rupture dynamics and energy partitioning. Previous work by several groups has succeeded in determining conditions under which a main rupture may branch into a secondary fault. Recently, there great progress has been made in investigating rupture propagation on rough faults with and without off-fault plasticity. Nonetheless, in most of these models the heterogeneity, whether the roughness profile or the secondary faults orientation, was built into the system from the beginning and consequently the final outcome depends strongly on the initial conditions. Here we introduce an adaptive mesh technique for modeling mode-II crack propagation on slip weakening frictional interfaces. We use a Finite Element Framework with random mesh topology that adapts to crack dynamics through element splitting and sequential insertion of frictional interfaces dictated by the failure criterion. This allows the crack path to explore non-planar paths and develop the roughness profile that is most compatible with the dynamical constraints. It also enables crack branching at different scales. We quantify energy dissipation due to the roughening process and small scale branching. We compare the results of our model to a reference case for propagation on a planar fault. We show that the small scale processes of roughening and branching influence many characteristics of the rupture propagation including the energy partitioning, rupture speed and peak slip rates. We also estimate the fracture energy required for propagating a crack on a planar fault that will be required to produce comparable results. We anticipate that this modeling approach provides an attractive methodology that complements the current efforts in modeling off-fault plasticity and damage.

Comparative Genomics of the Listeria monocytogenes ST204 Subgroup

PubMed Central

Fox, Edward M.; Allnutt, Theodore; Bradbury, Mark I.; Fanning, Séamus; Chandry, P. Scott

2016-01-01

The ST204 subgroup of Listeria monocytogenes is among the most frequently isolated in Australia from a range of environmental niches. In this study we provide a comparative genomics analysis of food and food environment isolates from geographically diverse sources. Analysis of the ST204 genomes showed a highly conserved core genome with the majority of variation seen in mobile genetic elements such as plasmids, transposons and phage insertions. Most strains (13/15) harbored plasmids, which although varying in size contained highly conserved sequences. Interestingly 4 isolates contained a conserved plasmid of 91,396 bp. The strains examined were isolated over a period of 12 years and from different geographic locations suggesting plasmids are an important component of the genetic repertoire of this subgroup and may provide a range of stress tolerance mechanisms. In addition to this 4 phage insertion sites and 2 transposons were identified among isolates, including a novel transposon. These genetic elements were highly conserved across isolates that harbored them, and also contained a range of genetic markers linked to stress tolerance and virulence. The maintenance of conserved mobile genetic elements in the ST204 population suggests these elements may contribute to the diverse range of niches colonized by ST204 isolates. Environmental stress selection may contribute to maintaining these genetic features, which in turn may be co-selecting for virulence markers relevant to clinical infection with ST204 isolates. PMID:28066377

Comparative Genomics of the Listeria monocytogenes ST204 Subgroup.

PubMed

Fox, Edward M; Allnutt, Theodore; Bradbury, Mark I; Fanning, Séamus; Chandry, P Scott

2016-01-01

The ST204 subgroup of Listeria monocytogenes is among the most frequently isolated in Australia from a range of environmental niches. In this study we provide a comparative genomics analysis of food and food environment isolates from geographically diverse sources. Analysis of the ST204 genomes showed a highly conserved core genome with the majority of variation seen in mobile genetic elements such as plasmids, transposons and phage insertions. Most strains (13/15) harbored plasmids, which although varying in size contained highly conserved sequences. Interestingly 4 isolates contained a conserved plasmid of 91,396 bp. The strains examined were isolated over a period of 12 years and from different geographic locations suggesting plasmids are an important component of the genetic repertoire of this subgroup and may provide a range of stress tolerance mechanisms. In addition to this 4 phage insertion sites and 2 transposons were identified among isolates, including a novel transposon. These genetic elements were highly conserved across isolates that harbored them, and also contained a range of genetic markers linked to stress tolerance and virulence. The maintenance of conserved mobile genetic elements in the ST204 population suggests these elements may contribute to the diverse range of niches colonized by ST204 isolates. Environmental stress selection may contribute to maintaining these genetic features, which in turn may be co-selecting for virulence markers relevant to clinical infection with ST204 isolates.

Finite element analysis of the Wolf Creek multispan curved girder bridge.

DOT National Transportation Integrated Search

2008-01-01

The use of curved girder bridges in highway construction has grown steadily during the last 40 years. Today, roughly 25% of newly constructed bridges have a curved alignment. Curved girder bridges have numerous complicating geometric features that di...

Management Information in Tertiary Institutions.

ERIC Educational Resources Information Center

Findlay, A. W.

1981-01-01

A college or university's management information system corresponds roughly to the institution's structure, with these elements in descending order in the hierarchy: policy and planning, a planning system, control and coordination, and typical operating systems (payroll, exams, scheduling, library, facilities assignments, and accounting…

Modeling the Interactions Between Multiple Crack Closure Mechanisms at Threshold

NASA Technical Reports Server (NTRS)

Newman, John A.; Riddell, William T.; Piascik, Robert S.

2003-01-01

A fatigue crack closure model is developed that includes interactions between the three closure mechanisms most likely to occur at threshold; plasticity, roughness, and oxide. This model, herein referred to as the CROP model (for Closure, Roughness, Oxide, and Plasticity), also includes the effects of out-of plane cracking and multi-axial loading. These features make the CROP closure model uniquely suited for, but not limited to, threshold applications. Rough cracks are idealized here as two-dimensional sawtooths, whose geometry induces mixed-mode crack- tip stresses. Continuum mechanics and crack-tip dislocation concepts are combined to relate crack face displacements to crack-tip loads. Geometric criteria are used to determine closure loads from crack-face displacements. Finite element results, used to verify model predictions, provide critical information about the locations where crack closure occurs.

Characterization of surface roughness effects on pressure drop in single-phase flow in minichannels

NASA Astrophysics Data System (ADS)

Kandlikar, Satish G.; Schmitt, Derek; Carrano, Andres L.; Taylor, James B.

2005-10-01

Roughness features on the walls of a channel wall affect the pressure drop of a fluid flowing through that channel. This roughness effect can be described by (i) flow area constriction and (ii) increase in the wall shear stress. Replotting the Moody's friction factor chart with the constricted flow diameter results in a simplified plot and yields a single asymptotic value of friction factor for relative roughness values of ɛ /D>0.03 in the fully developed turbulent region. After reviewing the literature, three new roughness parameters are proposed (maximum profile peak height Rp, mean spacing of profile irregularities RSm, and floor distance to mean line Fp). Three additional parameters are presented to consider the localized hydraulic diameter variation (maximum, minimum, and average) in future work. The roughness ɛ is then defined as Rp+Fp. This definition yields the same value of roughness as obtained from the sand-grain roughness [H. Darcy, Recherches Experimentales Relatives au Mouvement de L'Eau dans les Tuyaux (Mallet-Bachelier, Paris, France, 1857); J. T. Fanning, A Practical Treatise on Hydraulic and Water Supply Engineering (Van Nostrand, New York, 1877, revised ed. 1886); J. Nikuradse, "Laws of flow in rough pipes" ["Stromungsgesetze in Rauen Rohren," VDI-Forschungsheft 361 (1933)]; Beilage zu "Forschung auf dem Gebiete des Ingenieurwesens," Ausgabe B Band 4, English translation NACA Tech. Mem. 1292 (1937)]. Specific experiments are conducted using parallel sawtooth ridge elements, placed normal to the flow direction, in aligned and offset configurations in a 10.03mm wide rectangular channel with variable gap (resulting hydraulic diameters of 325μm-1819μm with Reynolds numbers ranging from 200 to 7200 for air and 200 to 5700 for water). The use of constricted flow diameter extends the applicability of the laminar friction factor equations to relative roughness values (sawtooth height) up to 14%. In the turbulent region, the aligned and offset roughness arrangements yield different results indicating a need to further characterize the surface features. The laminar to turbulent transition is also seen to occur at lower Reynolds numbers with an increase in the relative roughness.

Hello IM, Goodbye TTY

ERIC Educational Resources Information Center

Bell, Lori; Peters, Tom

2006-01-01

According to the National Association of the Deaf, there are approximately 28 million deaf and hearing-impaired people in the U.S.--roughly 10 percent of the total population. This hearing-impaired population may be even more isolated than the visually impaired community. Although technology is making it easier for libraries to provide effective…

Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’

PubMed Central

Yu, Qibin; Chen, Chunxian; Du, Dongliang; Huang, Ming; Yao, Jiqiang; Yu, Fahong; Brlansky, Ronald H; Gmitter, Frederick G.

2017-01-01

Huanglongbing (HLB) in citrus infected by Candidatus Liberibacter asiaticus (CLas) has caused tremendous losses to the citrus industry. No resistant genotypes have been identified in citrus species or close relatives. Among citrus varieties, rough lemon (Citrus jambhiri) has been considered tolerant due to its ability to produce a healthy flush of new growth after infection. The difference between tolerance and susceptibility is often defined by the speed and intensity of a plant’s response to a pathogen, especially early defense responses. RNA-seq data were collected from three biological replicates of CLas- and mock-inoculated rough lemon and sweet orange at week 0 and 7 following infection. Functional analysis of the differentially expressed genes (DEGs) indicated that genes involved in the mitogen activated protein kinase (MAPK) signaling pathway were highly upregulated in rough lemon. MAPK induces the transcription of WRKY and other transcription factors which potentially turn on multiple defense-related genes. A Subnetwork Enrichment Analysis further revealed different patterns of regulation of several functional categories, suggesting DEGs with different functions were subjected to reprogramming. In general, the amplitude of the expression of defense-related genes is much greater in rough lemon than in sweet orange. A quantitative disease resistance response may contribute to the durable tolerance level to HLB observed in rough lemon. PMID:29214028

A Study of the Mean Force Structure of Rough-Wall Turbulent Boundary Layers

NASA Astrophysics Data System (ADS)

Mehdi, Faraz; Klewicki, Joseph

2011-11-01

Analysis of existing data by Mehdi, Klewicki & White [Physica D 239(2010)] provides evidence that the traditional classifications do not fully account for the combined effects of roughness and Reynolds number. We continue to explore this further, and in the present talk report on experiments that used 24-grit sandpaper and pea gravel for roughness over an 8m fetch. Two-component LDV measurements are used to acquire well-resolved mean velocity and Reynolds stress profiles over a modest range of Reynolds numbers. These data are used to estimate the terms in the appropriate mean statement of dynamics, which directly reveals the operative time-averaged balance of forces. The present results further reinforce the previous observation that the mean viscous force retains dominant order above (and often well-above) the roughness elements. Force balance data are shown to be usefully organized relative to the length scale that defines the region from the wall to where the leading order mean dynamics are described by a balance between mean advection and the mean effect of turbulent inertia. In the smooth-wall flow, this length scale is only a function of Reynolds number. In rough-wall flows, the data indicate it to be a function of roughness and Reynolds number. The support of the ONR (N000140810836, grant monitor Ronald Joslin) is gratefully acknowledged.

Detecting surface roughness effects on the atmospheric boundary layer via AIRSAR data: A field experiment in Death Valley, California

NASA Technical Reports Server (NTRS)

Blumberg, Dan G.; Greeley, Ronald

1992-01-01

The part of the troposphere influenced by the surface of the earth is termed the atmospheric boundary layer. Flow within this layer is influenced by the roughness of the surface; rougher surfaces induce more turbulence than smoother surfaces and, hence, higher atmospheric transfer rates across the surface. Roughness elements also shield erodible particles, thus decreasing the transport of windblown particles. Therefore, the aerodynamic roughness length (z(sub 0)) is an important parameter in aeolian and atmospheric boundary layer processes as it describes the aerodynamic properties of the underlying surface. z(sub 0) is assumed to be independent of wind velocity or height, and dependent only on the surface topography. It is determined using in situ measurements of the wind speed distribution as a function of height. For dry, unvegetated soils the intensity of the radar backscatter (sigma(sup 0)) is affected primarily by surface roughness at a scale comparable with the radar wavelength. Thus, both wind and radar respond to surface roughness variations on a scale of a few meters or less. Greeley showed the existence of a correlation between z(sub 0) and sigma(sup 0). This correlation was based on measurements over lava flows, alluvial fans, and playas in the southwest deserts of the United States. It is shown that the two parameters behave similarly also when there are small changes over a relatively homogeneous surface.

Broadband gradient index microwave quasi-optical elements based on non-resonant metamaterials.

PubMed

Liu, Ruopeng; Cheng, Qiang; Chin, Jessie Y; Mock, Jack J; Cui, Tie Jun; Smith, David R

2009-11-09

Utilizing non-resonant metamaterial elements, we demonstrate that complex gradient index optics can be constructed exhibiting low material losses and large frequency bandwidth. Although the range of structures is limited to those having only electric response, with an electric permittivity always equal to or greater than unity, there are still numerous metamaterial design possibilities enabled by leveraging the non-resonant elements. For example, a gradient, impedance matching layer can be added that drastically reduces the return loss of the optical elements due to reflection. In microwave experiments, we demonstrate the broadband design concepts with a gradient index lens and a beam-steering element, both of which are confirmed to operate over the entire X-band (roughly 8-12 GHz) frequency spectrum.

Endospores of halophilic bacteria of the family Bacillaceae isolated from non-saline Japanese soil may be transported by Kosa event (Asian dust storm)

PubMed Central

Echigo, Akinobu; Hino, Miki; Fukushima, Tadamasa; Mizuki, Toru; Kamekura, Masahiro; Usami, Ron

2005-01-01

Background Generally, extremophiles have been deemed to survive in the extreme environments to which they had adapted to grow. Recently many extremophiles have been isolated from places where they are not expected to grow. Alkaliphilic microorganisms have been isolated from acidic soil samples with pH 4.0, and thermophiles have been isolated from samples of low temperature. Numerous moderately halophilic microorganisms, defined as those that grow optimally in media containing 0.5–2.5 Molar (3–15%) NaCl, and halotolerant microorganisms that are able to grow in media without added NaCl and in the presence of high NaCl have been isolated from saline environments such as salterns, salt lakes and sea sands. It has tacitly been believed that habitats of halophiles able to grow in media containing more than 20% (3.4 M) are restricted to saline environments, and no reports have been published on the isolation of halophiles from ordinary garden soil samples. Results We demonstrated that many halophilic bacteria that are able to grow in the presence of 20% NaCl are inhabiting in non-saline environments such as ordinary garden soils, yards, fields and roadways in an area surrounding Tokyo, Japan. Analyses of partial 16S rRNA gene sequences of 176 isolates suggested that they were halophiles belonging to genera of the family Bacillaceae, Bacillus (11 isolates), Filobacillus (19 isolates), Gracilibacillus (6 isolates), Halobacillus (102 isolates), Lentibacillus (1 isolate), Paraliobacillus (5 isolates) and Virgibacillus (17 isolates). Sequences of 15 isolates showed similarities less than 92%, suggesting that they may represent novel taxa within the family Bacillaceae. Conclusion The numbers of total bacteria of inland soil samples were in a range from 1.4 × 107/g to 1.1 × 106/g. One tenth of the total bacteria was occupied by endospore-forming bacteria. Only very few of the endospore-forming bacteria, roughly 1 out of 20,000, are halophilic bacteria. Most of the halophilic bacteria were surviving as endospores in the soil samples, in a range of less than 1 to about 500/g soil. Samples collected from seashore in a city confronting Tokyo Bay gave the total numbers of bacteria and endospores roughly 1000 time smaller than those of inland soil samples. Numbers of halophilic bacteria per gram, however, were almost the same as those of inland soil samples. A possible source of the halophilic endospore originating from Asian dust storms is discussed. PMID:16242015

Mapping water surface roughness in a shallow, gravel-bed river using hyperspectral imagery

NASA Astrophysics Data System (ADS)

Overstreet, B. T.; Legleiter, C. J.

2014-12-01

Rapid advances in remote sensing are narrowing the gap between the data available for characterizing physical and biological processes in rivers and the information needed to guide river management decisions. The availability and quality of hyperspectral imagery have increased drastically over the past 20 years and hyperspectral data is now used in a number of different capacities that range from classifying riverine environments to measuring river bathymetry. A fundamental challenge in relating the spectral data from images to biophysical processes is the difficulty of isolating individual contributions to the at-sensor radiance, each associated with a different component of the fluvial environment. In this presentation we describe a method for isolating the contribution of light reflected from the water surface, or sun glint, from a hyperspectral image of a shallow gravel-bed river. We show that isolation and removal of sun glint can improve the accuracy of spectrally-based depth retrieval in cases where sun glint dominates the at-sensor radiance. Observed-vs.-predicted R2 values for depth retrieval improved from 0.56 to 0.68 following sun glint removal. In addition to clarifying the signal associated with the water column and bed, isolating sun glint could unlock important hydraulic information contained within the topography of the water surface. We present data from flume and field experiments suggesting that the intensity of sun glint is a function of water surface roughness. In rivers, water surface roughness depends on local flow hydraulics: depth, velocity, and bed material grain size. To explore this relationship, we coupled maps of image-derived sun glint with hydraulic measurements collected with a kayak-borne acoustic Doppler current profiler along 2 km of the Snake River in Grand Teton National Park. Spatial patterns of sun glint are spatially correlated with field observations of near-surface velocity and depth, suggesting that reach scale hydraulics could be mapped from hyperspectral images. These findings also suggest that aquatic habitats, which are often associated with specific hydraulic conditions and manifested as distinct surface textures, could be mapped quantitatively over large areas using hyperspectral imagery.

Effects of plaque lengths on stent surface roughness.

PubMed

Syaifudin, Achmad; Takeda, Ryo; Sasaki, Katsuhiko

2015-01-01

The physical properties of the stent surface influence the effectiveness of vascular disease treatment after stent deployment. During the expanding process, the stent acquires high-level deformation that could alter either its microstructure or the magnitude of surface roughness. This paper constructed a finite element simulation to observe the changes in surface roughness during the stenting process. Structural transient dynamic analysis was performed using ANSYS, to identify the deformation after the stent is placed in a blood vessel. Two types of bare metal stents are studied: a Palmaz type and a Sinusoidal type. The relationship between plaque length and the changes in surface roughness was investigated by utilizing three different length of plaque; plaque length longer than the stent, shorter than the stent and the same length as the stent. In order to reduce computational time, 3D cyclical and translational symmetry was implemented into the FE model. The material models used was defined as a multilinear isotropic for stent and hyperelastic for the balloon, plaque and vessel wall. The correlation between the plastic deformation and the changes in surface roughness was obtained by intermittent pure tensile test using specimen whose chemical composition was similar to that of actual stent material. As the plastic strain is achieved from FE simulation, the surface roughness can be assessed thoroughly. The study found that the plaque size relative to stent length significantly influenced the critical changes in surface roughness. It was found that the length of stent which is equal to the plaque length was preferable due to the fact that it generated only moderate change in surface roughness. This effect was less influential to the Sinusoidal stent.

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae

PubMed Central

Li, Zhigang; Hu, Songnian; Yao, Nan; Dean, Ralph A.; Zhao, Wensheng; Shen, Mi; Zhang, Haiwang; Li, Chao; Liu, Liyuan; Cao, Lei; Xu, Xiaowen; Xing, Yunfei; Hsiang, Tom; Zhang, Ziding; Xu, Jin-Rong; Peng, You-Liang

2012-01-01

Rice blast caused by Magnaporthe oryzae is one of the most destructive diseases of rice worldwide. The fungal pathogen is notorious for its ability to overcome host resistance. To better understand its genetic variation in nature, we sequenced the genomes of two field isolates, Y34 and P131. In comparison with the previously sequenced laboratory strain 70-15, both field isolates had a similar genome size but slightly more genes. Sequences from the field isolates were used to improve genome assembly and gene prediction of 70-15. Although the overall genome structure is similar, a number of gene families that are likely involved in plant-fungal interactions are expanded in the field isolates. Genome-wide analysis on asynonymous to synonymous nucleotide substitution rates revealed that many infection-related genes underwent diversifying selection. The field isolates also have hundreds of isolate-specific genes and a number of isolate-specific gene duplication events. Functional characterization of randomly selected isolate-specific genes revealed that they play diverse roles, some of which affect virulence. Furthermore, each genome contains thousands of loci of transposon-like elements, but less than 30% of them are conserved among different isolates, suggesting active transposition events in M. oryzae. A total of approximately 200 genes were disrupted in these three strains by transposable elements. Interestingly, transposon-like elements tend to be associated with isolate-specific or duplicated sequences. Overall, our results indicate that gain or loss of unique genes, DNA duplication, gene family expansion, and frequent translocation of transposon-like elements are important factors in genome variation of the rice blast fungus. PMID:22876203

Detection of tetQ and ermF antibiotic resistance genes in Prevotella and Porphyromonas isolates from clinical specimens and resident microbiota of humans.

PubMed

Arzese, A R; Tomasetig, L; Botta, G A

2000-05-01

Gram-negative anaerobes belonging to the genera Fusobacterium, Prevotella and Porphyromonas were investigated for the presence of tetQ and ermF, which have been shown to be spread by conjugal elements. One hundred isolates from either sites of infection or various body sites in healthy subjects were studied. PCR was used to detect tetQ, and DNA-DNA hybridization studies on EcoRI chromosomal digests were undertaken to detect the presence of tetQ and ermF. Antibiotic sensitivity assays were performed on selected isolates to detect tetracycline, erythromycin and penicillin resistance. Twenty Fusobacterium isolates lacked tetQ, and were tetracycline sensitive. Twenty per cent of Prevotella spp. isolates both from clinical specimens and from healthy subjects were found to possess tetQ. Of 20 Porphyromonas isolates tested, one (Porphyromonas levii) from a case of bacterial vaginosis was shown to possess tetQ in the chromosome. The presence of tetQ was always associated with tetracycline resistance. Four isolates of Prevotella melaninogenica and one isolate of Prevotella were ermF-positive, although expression of erythromycin resistance was not consistently associated with detection of this gene. Antibiotic resistance phenotypes of Prevotella isolates were shown to be related to specific chromosomal restriction patterns by hybridization studies: tetracycline resistance and tetracycline/erythromycin resistance are conferred by Bacteroides tetracycline-resistant ERL elements, whereas the tetracycline/penicillin resistance phenotype could be due to spread of elements identified in Prevotella only. Tetracycline/erythromycin-resistant and tetracycline/erythromycin/penicillin-resistant P. melaninogenica isolates were found in this study. It appeared that the presence of tetQ and ermF in Bacteroides and Prevotella contributed to the persistence of antibiotic resistance isolates within the host and to potential spread to other organisms through conjugal elements.

How does sediment affect the hydraulics of bedrock-alluvial rivers?

NASA Astrophysics Data System (ADS)

Hodge, Rebecca; Hoey, Trevor; Maniatis, George; Leprêtre, Emilie

2016-04-01

Relationships between flow, sediment transport and channel morphology are relatively well established in coarse-grained alluvial channels. Developing equivalent relationships for bedrock-alluvial channels is complicated by the two different components that comprise the channel morphology: bedrock and sediment. These two components usually have very different response times to hydraulic forcing, meaning that the bedrock morphology may be inherited from previous conditions. The influence of changing sediment cover on channel morphology and roughness will depend on the relative magnitudes of the sediment size and the spatial variations in bedrock elevation. We report results from experiments in a 0.9m wide flume designed to quantify the interactions between flow and sediment patch morphology using two contrasting bedrock topographies. The first topography is a plane bed with sand-scale roughness, and the second is a 1:10 scale, 3D printed, model of a bedrock channel with spatially variable roughness (standard deviation of elevations = 12 mm in the flume). In all experiments, a sediment pulse was added to the flume (D50 between 7 and 15 mm) and sediment patches were allowed to stabilise under constant flow conditions. The flow was then incrementally increased in order to identify the discharges at which sediment patches and isolated grains were eroded. In the plane bed experiments ˜20% sediment cover is sufficient to alter the channel hydraulics through the increased roughness of the bed; this impact is expressed as the increased discharge at which isolated grains are entrained. In the scaled bed experiments, partial sediment cover decreased local flow velocities on a relatively smooth area of the bed. At the scale of the entire channel, the bed morphology, and the hydraulics induced by it, was a primary control on sediment cover stability at lower sediment inputs. At higher inputs, where sediment infilled the local bed topography, patches were relatively more stable, suggesting an increased impact on the hydraulics and the role of grain-grain interactions. We draw together these experiments using a theoretical framework to express the impact of sediment cover on channel roughness and hence hydraulics.

Initial dynamic load estimates during configuration design

NASA Technical Reports Server (NTRS)

Schiff, Daniel

1987-01-01

This analysis includes the structural response to shock and vibration and evaluates the maximum deflections and material stresses and the potential for the occurrence of elastic instability, fatigue and fracture. The required computations are often performed by means of finite element analysis (FEA) computer programs in which the structure is simulated by a finite element model which may contain thousands of elements. The formulation of a finite element model can be time consuming, and substantial additional modeling effort may be necessary if the structure requires significant changes after initial analysis. Rapid methods for obtaining rough estimates of the structural response to shock and vibration are presented for the purpose of providing guidance during the initial mechanical design configuration stage.

An isolation-enhanced quad-element antenna using suspended solid wires for LTE small-cell base stations

NASA Astrophysics Data System (ADS)

Chen, Yen-Sheng; Zhou, Huang-Cheng

2017-05-01

This paper presents a multiple-input-multiple-output (MIMO) antenna that has four-unit elements enabled by an isolation technique for long-term evolution (LTE) small-cell base stations. While earlier studies on MIMO base-station antennas cope with either a lower LTE band (698-960 MHz) or an upper LTE band (1710-2690 MHz), the proposed antenna meets the full LTE specification, yet it uses the maximum number of unit elements to increase channel capacity. The antenna configuration is optimized for good impedance matching and high radiation efficiency. In particular, as the spacing between unit elements is so small that severe mutual coupling occurs, we propose a simple structure with extremely low costs to enhance the isolation. By using suspended solid wires interconnecting the position having strong coupled current of two adjacent elements, an isolation enhancement of 37 dB is achieved. Although solid wires inherently aim at direct-current applications, this work successfully employs such a low-cost technique to microwave antenna development. Experimental results have validated the design guidelines and the proposed configuration, showing that antenna performances including impedance matching, isolation, radiation features, signal correlation, and channel capacity gain are highly desired for LTE small-cell base stations.

Characterization of Conventional and High-Translucency Y-TZP Dental Ceramics Submitted to Air Abrasion.

PubMed

Tostes, Bhenya Ottoni; Guimarães, Renato Bastos; Noronha-Filho, Jaime Dutra; Botelho, Glauco Dos Santos; Guimarães, José Guilherme Antunes; Silva, Eduardo Moreira da

2017-01-01

This study evaluated the effect of air-abrasion on t®m phase transformation, roughness, topography and the elemental composition of three Y-TZP (Yttria-stabilized tetragonal zirconia polycrystal) dental ceramics: two conventional (Lava Frame and IPS ZirCad) and one with high-translucency (Lava Plus). Plates obtained from sintered blocks of each ceramic were divided into four groups: AS (as-sintered); 30 (air-abrasion with 30 mm Si-coated Al2O3 particles); 50 (air-abrasion with 50 mm Al2O3 particles) and 150 (air-abrasion with 150 mm Al2O3 particles). After the treatments, the plates were submitted to X-ray diffractometry; 3-D profilometry and SEM/EDS. The AS surfaces were composed of Zr and t phases. All treatments produced t®m phase transformation in the ceramics. The diameter of air-abrasion particles influenced the roughness (150>50>30>AS) and the topography. SEM analysis showed that the three treatments produced groove-shaped microretentions on the ceramic surfaces, which increased with the diameter of air-abrasion particles. EDS showed a decrease in Zr content along with the emergence of O and Al elements after air-abrasion. Presence of Si was also detected on the plates air-abraded with 30 mm Si-coated Al2O3 particles. It was concluded that irrespective of the type and diameter of the particles, air-abrasion produced t®m phase transformation, increased the roughness and changed the elemental composition of the three Y-TZP dental ceramics. Lava Plus also behaved similarly to the conventional Y-TZP ceramics, indicating that this high translucency ceramic could be more suitable to build monolithic ceramic restorations in the aesthetic restorative dentistry field.

Fabrication of transparent superhydrophobic polytetrafluoroethylene coating

NASA Astrophysics Data System (ADS)

Alawajji, Raad A.; Kannarpady, Ganesh K.; Biris, Alexandru S.

2018-06-01

Polytetrafluoroethylene (PTFE) thin films were successfully deposited on glass substrates using pulsed laser deposition, with deposition times ranging from 30 to 120 minutes (min). The surface roughness of the films increased as deposition time increased, with micro/nanoscale roughness developing when deposition time increased over 60 min. This roughness made the surface superhydrophobic, having a contact angle of about 151.6°±1. UV-vis spectroscopic analysis of the PTFE films revealed that they were highly transparent, up to ∼90% in visible and near-infrared ranges. Furthermore, when the deposition time was increased-which increased the films' thickness-the films were able to absorb 80-90% of ultraviolet light in the wavelength range <300 nm. The researchers used an x-ray photoelectron spectrometer to find the chemical and elemental composition of the films' surfaces. Atomic force microscopy was used to determine the effect of surface roughness on the films' hydrophobicity. The fabricated superhydrophobic films have many potential practical uses, from self-cleaning materials to solar cell panel coatings. Additionally, the low dielectric properties of PTFE make the films' ideal for communication antenna coatings and similar applications.

Observations of Seafloor Roughness in a Tidally Modulated Inlet

NASA Astrophysics Data System (ADS)

Lippmann, T. C.; Hunt, J.

2014-12-01

The vertical structure of shallow water flows are influenced by the presence of a bottom boundary layer, which spans the water column for long period waves or mean flows. The nature of the boundary is determined in part by the roughness elements that make up the seafloor, and includes sometimes complex undulations associated with regular and irregular shaped bedforms whose scales range several orders of magnitude from orbital wave ripples (10-1 m) to mega-ripples (100 m) and even larger features (101-103) such as sand waves, bars, and dunes. Modeling efforts often parameterize the effects of roughness elements on flow fields, depending on the complexity of the boundary layer formulations. The problem is exacerbated by the transient nature of bedforms and their large spatial extent and variability. This is particularly important in high flow areas with large sediment transport, such as tidally dominated sandy inlets like New River Inlet, NC. Quantification of small scale seafloor variability over large spatial areas requires the use of mobile platforms that can measure with fine scale (order cm) accuracy in wide swaths. The problem is difficult in shallow water where waves and currents are large, and water clarity is often limited. In this work, we present results from bathymetric surveys obtained with the Coastal Bathymetry Survey System, a personal watercraft equipped with a Imagenex multibeam acoustic echosounder and Applanix POS-MV 320 GPS-aided inertial measurement unit. This system is able to measure shallow water seafloor bathymetry and backscatter intensity with very fine scale (10-1 m) resolution and over relatively large scales (103 m) in the presence of high waves and currents. Wavenumber spectra show that the noise floor of the resolved multibeam bathymetry is on the order of 2.5 - 5 cm in amplitude, depending on water depths ranging 2 - 6 m, and about 30 cm in wavelength. Seafloor roughness elements are estimated from wavenumber spectra across the inlet from bathymetric maps of the seafloor obtained with 10-25 cm horizontal resolution. Implications of the effects of the bottom variability on the vertical structure of the currents will be discussed. This work was supported by ONR and NOAA.

A wind tunnel study of flows over idealised urban surfaces with roughness sublayer corrections

NASA Astrophysics Data System (ADS)

Ho, Yat-Kiu; Liu, Chun-Ho

2017-10-01

Dynamics in the roughness (RSLs) and inertial (ISLs) sublayers in the turbulent boundary layers (TBLs) over idealised urban surfaces are investigated analytically and experimentally. In this paper, we derive an analytical solution to the mean velocity profile, which is a continuous function applicable to both RSL and ISL, over rough surfaces in isothermal conditions. Afterwards, a modified mixing-length model for RSL/ISL transport is developed that elucidates how surface roughness affects the turbulence motions. A series of wind tunnel experiments are conducted to measure the vertical profiles of mean and fluctuating velocities, together with momentum flux over various configurations of surface-mounted ribs in cross flows using hot-wire anemometry (HWA). The analytical solution agrees well with the wind tunnel result that improves the estimate to mean velocity profile over urban surfaces and TBL dynamics as well. The thicknesses of RSL and ISL are calculated by monitoring the convergence/divergence between the temporally averaged and spatio-temporally averaged profiles of momentum flux. It is found that the height of RSL/ISL interface is a function of surface roughness. Examining the direct, physical influence of roughness elements on near-surface RSL flows reveals that the TBL flows over rough surfaces exhibit turbulence motions of two different length scales which are functions of the RSL and ISL structure. Conclusively, given a TBL, the rougher the surface, the higher is the RSL intruding upward that would thinner the ISL up to 50 %. Therefore, the conventional ISL log-law approximation to TBL flows over urban surfaces should be applied with caution.

Boundary-layer receptivity due to distributed surface imperfections of a deterministic or random nature

NASA Technical Reports Server (NTRS)

Choudhari, Meelan

1992-01-01

Acoustic receptivity of a Blasius boundary layer in the presence of distributed surface irregularities is investigated analytically. It is shown that, out of the entire spatial spectrum of the surface irregularities, only a small band of Fourier components can lead to an efficient conversion of the acoustic input at any given frequency to an unstable eigenmode of the boundary layer flow. The location, and width, of this most receptive band of wavenumbers corresponds to a relative detuning of O(R sub l.b.(exp -3/8)) with respect to the lower-neutral instability wavenumber at the frequency under consideration, R sub l.b. being the Reynolds number based on a typical boundary-layer thickness at the lower branch of the neutral stability curve. Surface imperfections in the form of discrete mode waviness in this range of wavenumbers lead to initial instability amplitudes which are O(R sub l.b.(exp 3/8)) larger than those caused by a single, isolated roughness element. In contrast, irregularities with a continuous spatial spectrum produce much smaller instability amplitudes, even compared to the isolated case, since the increase due to the resonant nature of the response is more than that compensated for by the asymptotically small band-width of the receptivity process. Analytical expressions for the maximum possible instability amplitudes, as well as their expectation for an ensemble of statistically irregular surfaces with random phase distributions, are also presented.

Enhanced osteogenic potential of human mesenchymal stem cells on electrospun nanofibrous scaffolds prepared from eri-tasar silk fibroin.

PubMed

Panda, Niladri Nath; Biswas, Amit; Pramanik, Krishna; Jonnalagadda, Sriramakamal

2015-07-01

This study evaluated the mechanical properties and osteogenic potential of a silk fibroin scaffold prepared from a 70:30 blend of Eri (Philosamia ricini) and Tasar (Antheraea mylitta) silk, respectively (ET scaffolds). An electrospinning process was used to prepare uniformly blended, fibrous scaffolds of nanoscale dimensions, as confirmed by scanning and transmission electron microscopy (fiber diameter < 300 nm). Similarly prepared scaffolds derived from gelatin and Bombyx mori (BM) silk fibroin were used as controls. Mechanical testing and atomic force microscopy showed that the ET scaffolds had significantly higher tensile strength (1.83 ± 0.13 MPa) and surface roughness (0.44 μm) compared with BM (1.47 ± 0.10 MPa; 0.37 μm) and gelatin scaffolds (0.6 ± 0.07 MPa; 0.28 μm). All scaffolds were exposed to mesenchymal stem cells isolated to human chord blood (hMSCs) for up to 28 days in vitro. Alamar blue and alkaline phosphatase assay showed greater attachment and proliferation for both ET and BM scaffolds compared with gelatin. The ET scaffolds also promoted greater differentiation of the attached hMSCs as evidenced by higher expression of RunX2, osteocalcin, and CD29/CD44 expression. ET scaffolds also showed significantly higher mineralization, as evidenced by glycosaminoglycan assay, alizarin red staining, and elemental analysis of crystalline composites isolated from the scaffolds. © 2014 Wiley Periodicals, Inc.

The effect of roughness on the nucleation and propagation of shear rupture on small faults

NASA Astrophysics Data System (ADS)

Tal, Y.; Hager, B. H.

2016-12-01

Faults are rough at all scales and can be described as self-affine fractals. This deviation from planarity results in geometric asperities and a locally heterogeneous stress field, which affect the nucleation and propagation of shear rupture. We study this effect numerically and aim to understand the relative effects of different fault geometries, remote stresses, and medium and fault properties, focusing on small earthquakes, in which realistic geometry and friction law parameters can be incorporated in the model. Our numerical approach includes three main features. First, to enable slip that is large relative to the size of the elements near the fault, as well as the variation of normal stress during slip, we implement slip-weakening and rate-and state-friction laws into the Mortar Finite Element Method, in which non-matching meshes are allowed across the fault and the contacts are continuously updated. Second, we refine the mesh near the fault using hanging nodes, thereby enabling accurate representation of the fault geometry. Finally, using a variable time step size, we gradually increase the remote stress and let the rupture nucleate spontaneously. This procedure involves a quasi-static backward Euler scheme for the inter-seismic stages and a dynamic implicit Newmark scheme for the co-seismic stages. In general, under the same range of external loads, rougher faults experience more events but with smaller slips, stress drops, and slip rates, where the roughest faults experience only slow-slip aseismic events. Moreover, the roughness complicates the nucleation process, with asymmetric expansion of the rupture and larger nucleation length. In the propagation phase of the seismic events, the roughness results in larger breakdown zones.

The Effect of Interface Roughness and Oxide Film Thickness on the Inelastic Response of Thermal Barrier Coatings to Thermal Cycling

NASA Technical Reports Server (NTRS)

Pindera, Marek-Jerzy; Aboudi, Jacob; Arnold, Steven M.

1999-01-01

The effects of interfacial roughness and oxide film thickness on thermally-induced stresses in plasma-sprayed thermal barrier coatings subjected to thermal cycling are investigated using the recently developed higher-order theory for functionally graded materials. The higher-order theory is shown to be a viable alternative to the finite-element approach, capable of modeling different interfacial roughness architectures in the presence of an aluminum oxide layer and capturing the high stress gradients that occur at the top coat/bond coat interface. The oxide layer thickness is demonstrated to have a substantially greater effect on the evolution of residual stresses than local variations in interfacial roughness. Further, the location of delamination initiation in the top coat is predicted to change with increasing oxide layer thickness. This result can be used to optimize the thickness of a pre-oxidized layer introduced at the top coat/bond coat interface in order to enhance TBC durability as suggested by some researchers. The results of our investigation also support a recently proposed hypothesis regarding delamination initiation and propagation in the presence of an evolving bond coat oxidation, while pointing to the importance of interfacial roughness details and specimen geometry in modeling this phenomenon.

Double helix: reciprocity between juvenile play and brain development.

PubMed

Cooke, Bradley M; Shukla, Deep

2011-10-01

This review summarizes what is presently known about the function, sexual differentiation, and neural circuitry of juvenile rough-and-tumble play. Juvenile rough-and-tumble play is a unique motivated behavior that is widespread throughout the mammalian order and usually occurs more often in males. Immediate early gene studies indicate that cortical and subcortical circuits, many of which are sensitive to sex steroid hormones, mediate juvenile play. Sex differences in rough-and-tumble play are controlled in part by neonatal exposure to androgens or their estrogenic metabolites. Studies indicate that testicular androgens during play are also necessary to stimulate male-like levels of play initiation. The resemblance of rough-and-tumble play to aggression and sexual behavior has led some to question whether male-typical adult behavior is contingent upon the experience of play. Attempts to control the amount of play through social isolation show that social experience during adolescence is critical for male-typical adult behaviors to be expressed. This well-established finding, together with evidence that play induces neural plasticity, supports the hypothesis that juvenile play contributes to male-typical brain development that ultimately enables the expression of adult social and reproductive behavior. Copyright © 2011 Elsevier Ltd. All rights reserved.

Investigation of surface water behavior during glaze ice accretion

NASA Technical Reports Server (NTRS)

Hansman, R. John, Jr.; Turnock, Stephen R.

1990-01-01

A series of experimental investigations that focused on isolating the primary factors that control the behavior of unfrozen surface water during glaze ice accretion were conducted. Detailed microvideo observations were made of glaze ice accretions on 2.54 cm diam cylinders in a closed-loop refrigerated wind tunnel. Distinct zones of surface water behavior were observed; a smooth wet zone in the stagnation region with a uniform water film, a rough zone where surface tension effects caused coalescence of surface water into stationary beads, and a zone where surface water ran back as rivulets. The location of the transition from the smooth to the rough zone was found to migrate towards the stagnation point with time. Comparative tests were conducted to study the effect of the substrate thermal and roughness properties on ice accretion. The importance of surface water behavior was evaluated by the addition of a surface tension reducing agent to the icing tunnel water supply, which significantly altered the accreted glaze ice shape. Measurements were made to determine the contact angle behavior of water droplets on ice. A simple multizone modification to current glaze ice accretion models was proposed to include the observed surface roughness behavior.

Pitch effects on vowel roughness and spectral noise for subjects in four musical voice classifications.

PubMed

Newman, R A; Emanuel, F W

1991-08-01

This study was designed to investigate the effects of vocal fo on vowel spectral noise level (SNL) and perceived vowel roughness for subjects in high- and low-pitch voice categories. The subjects were 40 adult singers (10 each sopranos, altos, tenors, and basses). Each produced the vowel /a/ in isolation at a comfortable speaking pitch, and at each of seven assigned pitches spaced at whole-tone intervals over a musical octave within his or her singing pitch range. The eight /a/ productions were repeated by each subject on a second test day. The SNL differences between repeated test samples (different days) were not statistically significant for any subject group. For the vowel samples produced at a comfortable pitch, a relatively large SNL was associated with samples phonated by the subjects of each sex who manifested the relatively low singing pitch range. Regarding the vowel samples produced at the assigned-pitch levels, it was found that both vowel SNL and perceived vowel roughness decreased as test-pitch level was raised over a range of one octave. The relationship between vocal pitch and either vowel roughness or SNL approached linearity for each of the four subject groups.

Simulation of RBS spectra with known 3D sample surface roughness

NASA Astrophysics Data System (ADS)

Malinský, Petr; Siegel, Jakub; Hnatowicz, Vladimir; Macková, Anna; Švorčík, Václav

2017-09-01

The Rutherford Backscattering Spectrometry (RBS) is a technique for elemental depth profiling with a nanometer depth resolution. Possible surface roughness of analysed samples can deteriorate the RBS spectra and makes their interpretation more difficult and ambiguous. This work describes the simulation of RBS spectra which takes into account real 3D morphology of the sample surface obtained by AFM method. The RBS spectrum is calculated as a sum of the many particular spectra obtained for randomly chosen particle trajectories over sample 3D landscape. The spectra, simulated for different ion beam incidence angles, are compared to the experimental ones measured with 2.0 MeV 4He+ ions. The main aim of this work is to obtain more definite information on how a particular surface morphology and measuring geometry affects the RBS spectra and derived elemental depth profiles. A reasonable agreement between the measured and simulated spectra was found and the results indicate that the AFM data on the sample surface can be used for the simulation of RBS spectra.

Morphological, elemental, and optical characterization of plasma polymerized n-butyl methacrylate thin films

NASA Astrophysics Data System (ADS)

Nasrin, Rahima; Hossain, Khandker S.; Bhuiyan, A. H.

2018-05-01

Plasma polymerized n-butyl methacrylate (PPnBMA) thin films of varying thicknesses were prepared at room temperature by AC plasma polymerization system using a capacitively coupled parallel plate reactor. Field-emission scanning electron microscopy (FESEM), atomic force microscopy (AFM), energy-dispersive X-ray (EDX) analysis, and ultraviolet-visible (UV-Vis) spectroscopic investigation have been performed to study the morphological, elemental, and optical properties of the PPnBMA thin films, respectively. The flat and defect-free nature of thin films were confirmed by FESEM and AFM images. With declining plasma power, average roughness and root mean square roughness increase. Allowed direct transition ( E gd) and indirect transition ( E gi) energy gaps were found to be 3.64-3.80 and 3.38-3.45 eV, respectively, for PPnBMA thin films of different thicknesses. Values of E gd as well as E gi increase with the increase of thickness. The extinction coefficient, Urbach energy, and steepness parameter were also determined for these thin films.

Membrane fouling in a submerged membrane bioreactor: New method and its applications in interfacial interaction quantification.

PubMed

Hong, Huachang; Cai, Xiang; Shen, Liguo; Li, Renjie; Lin, Hongjun

2017-10-01

Quantification of interfacial interactions between two rough surfaces represents one of the most pressing requirements for membrane fouling prediction and control in membrane bioreactors (MBRs). This study firstly constructed regularly rough membrane and particle surfaces by using rigorous mathematical equations. Thereafter, a new method involving surface element integration (SEI) method, differential geometry and composite Simpson's rule was proposed to quantify the interfacial interactions between the two constructed rough surfaces. This new method were then applied to investigate interfacial interactions in a MBR with the data of surface properties of membrane and foulants experimentally measured. The feasibility of the new method was verified. It was found that asperity amplitude and period of the membrane surface exerted profound effects on the total interaction. The new method had broad potential application fields especially including guiding membrane surface design for membrane fouling mitigation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Determination of Flow Resistance Coefficient for Vegetation in Open Channel: Laboratory study

NASA Astrophysics Data System (ADS)

Aliza Ahmad, Noor; Ali, ZarinaMd; Arish, Nur Aini Mohd; Munirah Mat Daud, Azra; Fatin Amirah Alias, Nur

2018-04-01

This study focused on determination of flow resistances coefficient for grass in an open channel. Laboratory works were conducted to examine the effects of varying of roughness elements on the flume to determine flow resistance coefficient and also to determine the optimum flow resistance with five different flow rate, Q. Laboratory study with two type of vegetation which are Cow Grass and Pearl Grass were implementing to the bed of a flume. The roughness coefficient, n value is determine using Manning’s equation while Soil Conservation Services (SCS) method was used to determine the surface resistance. From the experiment, the flow resistance coefficient for Cow Grass in range 0.0008 - 0.0039 while Pearl Grass value for the flow resistance coefficient are in between 0.0013 - 0.0054. As a conclusion the vegetation roughness value in open channel are depends on density, distribution type of vegetation used and physical characteristic of the vegetation itself

Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)

PubMed Central

Giresi, Paul G.; Lieb, Jason D.

2009-01-01

The binding of sequence-specific regulatory factors and the recruitment of chromatin remodeling activities cause nucleosomes to be evicted from chromatin in eukaryotic cells. Traditionally, these active sites have been identified experimentally through their sensitivity to nucleases. Here we describe the details of a simple procedure for the genome-wide isolation of nucleosome-depleted DNA from human chromatin, termed FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). We also provide protocols for different methods of detecting FAIRE-enriched DNA, including use of PCR, DNA microarrays, and next-generation sequencing. FAIRE works on all eukaryotic chromatin tested to date. To perform FAIRE, chromatin is crosslinked with formaldehyde, sheared by sonication, and phenol-chloroform extracted. Most genomic DNA is crosslinked to nucleosomes and is sequestered to the interphase, whereas DNA recovered in the aqueous phase corresponds to nucleosome-depleted regions of the genome. The isolated regions are largely coincident with the location of DNaseI hypersensitive sites, transcriptional start sites, enhancers, insulators, and active promoters. Given its speed and simplicity, FAIRE has utility in establishing chromatin profiles of diverse cell types in health and disease, isolating DNA regulatory elements en masse for further characterization, and as a screening assay for the effects of small molecules on chromatin organization. PMID:19303047

Final Report: Contractor Readiness Assessment (CRA) for TREAT Fuel Movement and Control Rod Drives Isolation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rowsell, David Leon

This report documents the Contractor Readiness Assessment (CRA) for TREAT Fuel Movement and Control Rod Drives Isolation. The review followed the approved Plan of Action (POA) and Implementation Plan (IP) using the identified core requirements. The activity was limited scope focusing on the control rod drives functional isolation and fuel element movement. The purpose of this review is to ensure the facility's readiness to move fuel elements thus supporting inspection and functionally isolate the control rod drives to maintain the required shutdown margin.

Multi-hybrid method for investigation of EM scattering from inhomogeneous object above a dielectric rough surface

NASA Astrophysics Data System (ADS)

Li, Jie; Guo, LiXin; He, Qiong; Wei, Bing

2012-10-01

An iterative strategy combining Kirchhoff approximation^(KA) with the hybrid finite element-boundary integral (FE-BI) method is presented in this paper to study the interactions between the inhomogeneous object and the underlying rough surface. KA is applied to study scattering from underlying rough surfaces, whereas FE-BI deals with scattering from the above target. Both two methods use updated excitation sources. Huygens equivalence principle and an iterative strategy are employed to consider the multi-scattering effects. This hybrid FE-BI-KA scheme is an improved and generalized version of previous hybrid Kirchhoff approximation-method of moments (KA-MoM). This newly presented hybrid method has the following advantages: (1) the feasibility of modeling multi-scale scattering problems (large scale underlying surface and small scale target); (2) low memory requirement as in hybrid KA-MoM; (3) the ability to deal with scattering from inhomogeneous (including coated or layered) scatterers above rough surfaces. The numerical results are given to evaluate the accuracy of the multi-hybrid technique; the computing time and memory requirements consumed in specific numerical simulation of FE-BI-KA are compared with those of MoM. The convergence performance is analyzed by studying the iteration number variation caused by related parameters. Then bistatic scattering from inhomogeneous object of different configurations above dielectric Gaussian rough surface is calculated and the influences of dielectric compositions and surface roughness on the scattering pattern are discussed.

Numerical study of transitional flow in fractures: the role of roughness on the road to turbulence

NASA Astrophysics Data System (ADS)

Linga, G.; Mathiesen, J.

2017-12-01

In aquifers and petroleum reservoirs, fractures are ubiquitous, and the majority of the fluid transport in such systems often occurs through fracture networks. Knowledge of the flow properties in the single fractures that together form the networks is hence necessary for safe operation downhole. Non-linear, high-velocity flow in such systems is of particular importance for geothermics, since turbulent mixing is known to increase heat conduction by several orders of magnitude. This is of importance both in terms of storing and recovering heat from aquifers. On the other hand, flow in rough fractures is interesting from a turbulence perspective. The onset of turbulence in pipes and channels is a phenomenon that historically has received broad attention since the early experiments by Reynolds, and only during the last decades, the phenomenon is beginning to be fully understood. However, in the presence of roughness, much less is known. In this work, we present comprehensive numerical simulations of flow in synthetic rough channels, representing single fracture joints. Using the finite element method, we solve the full-fledged, time-dependent Navier-Stokes equations for flow in the channels, from laminar flow, through transitional, to turbulent flow. We link the descriptions of microscopic to macroscopic properties, using geometric properties such as effective aperture, paying particular attention to the role of inertia and roughness for the transport properties of the channels. Finally, we discuss implications of our study for the transition to turbulence in the presence of roughness.

Influence of roughness bottom on the dynamics of a buoyant cloud : application to a powder avalanche

NASA Astrophysics Data System (ADS)

Brossard, D.; Naaim-Bouvet, F.; Naaim, M.; Caccamo, P.

2009-04-01

A powder avalanche is referred to as a turbulent flow of snow particles in air. In the past such avalanches have been modelled by buoyant cloud in a watertank: buoyant clouds flow along an inclined plane from a small immersed tank with a release gate (injection is of short duration). The powder avalanches are simulated by a heavy fluid (salt water + colorant or kaolin) which is dispersing in a lighter one. Such experiments allow studies for the influence of roughness bottoms on the dynamics of a buoyant clouds. The authors studied the flows of buoyant clouds on an uniform slope of 20° with different roughness: smooth PVC, abrasive paper, bottom covered with glued particles of PMMA or with glued glass beads of different sizes arranged in a compact way. The released volume varies between 2 to 4 liters and the density of salted water is 1.2. Two cameras are used to obtain the height together with the front velocity. Inside the study area the front velocity is approximately constant and the height of the clouds varies linearly with the distance from the released gate as usually observed in previous experiments. So for each roughness a front velocity and height growth can be defined. It was shown from the experiments that: As the bottom increases in roughness, the front speed increases and the height growth decreases. Nevertheless the height of glued elements does not seem to be the most appropriate parameter to characterize the roughness.

Optimization of Machining Process Parameters for Surface Roughness of Al-Composites

NASA Astrophysics Data System (ADS)

Sharma, S.

2013-10-01

Metal matrix composites (MMCs) have become a leading material among the various types of composite materials for different applications due to their excellent engineering properties. Among the various types of composites materials, aluminum MMCs have received considerable attention in automobile and aerospace applications. These materials are known as the difficult-to-machine materials because of the hardness and abrasive nature of reinforcement element-like silicon carbide particles. In the present investigation Al-SiC composite was produced by stir casting process. The Brinell hardness of the alloy after SiC addition had increased from 74 ± 2 to 95 ± 5 respectively. The composite was machined using CNC turning center under different machining parameters such as cutting speed (S), feed rate (F), depth of cut (D) and nose radius (R). The effect of machining parameters on surface roughness (Ra) was studied using response surface methodology. Face centered composite design with three levels of each factor was used for surface roughness study of the developed composite. A response surface model for surface roughness was developed in terms of main factors (S, F, D and R) and their significant interactions (SD, SR, FD and FR). The developed model was validated by conducting experiments under different conditions. Further the model was optimized for minimum surface roughness. An error of 3-7 % was observed in the modeled and experimental results. Further, it was fond that the surface roughness of Al-alloy at optimum conditions is lower than that of Al-SiC composite.

Characterisation of a novel integrative and conjugative element ICESsD9 carrying erm(B) and tet(O) resistance determinants in Streptococcus suis, and the distribution of ICESsD9-like elements in clinical isolates.

PubMed

Huang, Kaisong; Song, Yajing; Zhang, Qiang; Zhang, Anding; Jin, Meilin

2016-12-01

This study identified a novel integrative and conjugative element (ICESsD9) carrying erm(B) and tet(O) resistance determinants in Streptococcus suis D9 and determined its prevalence in clinical isolates. Comparative genome analysis was performed using Mauve and Artemis Comparison Tool visualisation programs. Inverse PCR was utilised to detect its circular intermediate. The transfer capacity of ICESsD9 was evaluated by mating assays using S. suis A7 and Enterococcus faecalis JH2-2 as recipients. A genome walking approach was employed to analyse the characteristics of integration sites in transconjugants. A total of 118 clinical S. suis isolates were tested by PCR mapping assays to detect ICESsD9-like elements. MLST was performed on isolates containing ICESsD9 variants to determine their clonal relatedness. This 55 683-bp element can actively excise from the chromosome. Additionally, it was capable of transferring both into S. suis and E. faecalis with frequencies of 1.2×10 -4 and 5.8×10 -6 per donor, respectively. When investigating integration site features, it was found that ICESsD9 can enter S. suis and E. faecalis chromosomes by different sites, generating 15-bp and 3-bp direct repeat sequences, respectively. Twelve isolates mainly belonging to sequence types ST1, ST7 and ST28 were confirmed to harbour ICESsD9-like elements. In conclusion, this study provides the first description of an ICE in S. suis that is capable of transferring both into S. suis and E. faecalis. The presence of different ICESsD9 variants in clinical isolates suggests already wide dissemination of this family element in S. suis in China. Copyright © 2016 International Society for Chemotherapy of Infection and Cancer. Published by Elsevier Ltd. All rights reserved.

Structural characterization of the lipid A region of Aeromonas salmonicida subsp. salmonicida lipopolysaccharide.

PubMed

Wang, Zhan; Li, Jianjun; Altman, Eleonora

2006-12-11

The lipid A components of Aeromonas salmonicida subsp. salmonicida from strains A449, 80204-1 and an in vivo rough isolate were isolated by mild acid hydrolysis of the lipopolysaccharide. Structural studies carried out by a combination of fatty acid, electrospray ionization-mass spectrometry and nuclear magnetic resonance analyses confirmed that the structure of lipid A was conserved among different isolates of A. salmonicida subsp. salmonicida. All analyzed strains contained three major lipid A molecules differing in acylation patterns corresponding to tetra-, penta- and hexaacylated lipid A species and comprising 4'-monophosphorylated beta-2-amino-2-deoxy-d-glucopyranose-(1-->6)-2-amino-2-deoxy-d-glucopyranose disaccharide, where the reducing end 2-amino-2-deoxy-d-glucose was present primarily in the alpha-pyranose form. Electrospray ionization-tandem mass spectrometry fragment pattern analysis, including investigation of the inner-ring fragmentation, allowed the localization of fatty acyl residues on the disaccharide backbone of lipid A. The tetraacylated lipid A structure containing 3-(dodecanoyloxy)tetradecanoic acid at N-2',3-hydroxytetradecanoic acid at N-2 and 3-hydroxytetradecanoic acid at O-3, respectively, was found. The pentaacyl lipid A molecule had a similar fatty acid distribution pattern and, additionally, carried 3-hydroxytetradecanoic acid at O-3'. In the hexaacylated lipid A structure, 3-hydroxytetradecanoic acid at O-3' was esterified with a secondary 9-hexadecenoic acid. Interestingly, lipid A of the in vivo rough isolate contained predominantly tetra- and pentaacylated lipid A species suggesting that the presence of the hexaacyl lipid A was associated with the smooth-form lipopolysaccharide.

Systems and methods for reducing transient voltage spikes in matrix converters

DOEpatents

Kajouke, Lateef A.; Perisic, Milun; Ransom, Ray M.

2013-06-11

Systems and methods are provided for delivering energy using an energy conversion module that includes one or more switching elements. An exemplary electrical system comprises a DC interface, an AC interface, an isolation module, a first conversion module between the DC interface and the isolation module, and a second conversion module between the AC interface and the isolation module. A control module is configured to operate the first conversion module to provide an injection current to the second conversion module to reduce a magnitude of a current through a switching element of the second conversion module before opening the switching element.

The velocity and composition of supernova ejecta

NASA Technical Reports Server (NTRS)

Colgate, S. A.

1971-01-01

In case of the Gum nebula, a pulsar - a presumed neutron star - is believed to be a relic of the supernova explosion. Regardless of the mechanism of the explosion, the velocity distribution and composition of the ejected matter will be roughly the same. The reimploding mass fraction is presumed to be neutron rich. The final composition is thought to be roughly 1/3 iron and 2/3 silicon, with many small fractions of elements from helium to iron. The termination of helium shell burning occurs because the shell is expanded and cooled by radiation stress. The mass fraction of the helium burning shell was calculated.

Photometry of icy satellites: How important is multiple scattering in diluting shadows?

NASA Technical Reports Server (NTRS)

Buratti, B.; Veverka, J.

1984-01-01

Voyager observations have shown that the photometric properties of icy satellites are influenced significantly by large-scale roughness elements on the surfaces. While recent progress was made in treating the photometric effects of macroscopic roughness, it is still the case that even the most complete models do not account for the effects of multiple scattering fully. Multiple scattering dilutes shadows caused by large-scale features, yet for any specific model it is difficult to calculate the amount of dilution as a function of albedo. Accordingly, laboratory measurements were undertaken using the Cornell Goniometer to evaluate the magnitude of the effect.

Effect of ultraprecision polishing techniques on coherence times of shallow nitrogen-vacancy centers in diamond

NASA Astrophysics Data System (ADS)

Braunbeck, G.; Mandal, S.; Touge, M.; Williams, O. A.; Reinhard, F.

2018-05-01

We investigate the correlation between surface roughness and corresponding $T_2$ times of nearsurface nitrogen-vacancy centers (~7 nm/ 5 keV implantation energy) in diamond. For this purpose we compare five different polishing techniques, including both purely mechanical as well as chemical mechanical approaches, two different substrate sources (Diam2tec and Element Six) and two different surface terminations (O- and H-termination) during nitrogen-vacancy forming. All coherence times are measured and compared before and after an oxygen surface treatment at 520 {\\deg}C. We find that the coherence times of shallow nitrogen-vacancy centers are surprisingly independent of surface roughness.

Lateral ring metal elastic wheel absorbs shock loading

NASA Technical Reports Server (NTRS)

Galan, L.

1966-01-01

Lateral ring metal elastic wheel absorbs practically all shock loading when operated over extremely rough terrain and delivers only a negligible shock residue to associated suspension components. The wheel consists of a rigid aluminum assembly to which lateral titanium ring flexible elements with treads are attached.

Accumulation of rare earth elements by siderophore-forming Arthrobacter luteolus isolated from rare earth environment of Chavara, India.

PubMed

Emmanuel, E S Challaraj; Ananthi, T; Anandkumar, B; Maruthamuthu, S

2012-03-01

In this study, Arthrobacter luteolus, isolated from rare earth environment of Chavara (Quilon district, Kerala, India), were found to produce catechol-type siderophores. The bacterial strain accumulated rare earth elements such as samarium and scandium. The siderophores may play a role in the accumulation of rare earth elements. Catecholate siderophore and low-molecular-weight organic acids were found to be present in experiments with Arthrobacter luteolus. The influence of siderophore on the accumulation of rare earth elements by bacteria has been extensively discussed.

ISOLATED FROM CLINICAL AND ENVIRONMENTAL SOURCES IN NORTHEAST THAILAND.

PubMed

Mala, Wanida; Kaewkes, Wanlop; Tattawasart, Unchalee; Wongwajana, Suwin; Faksri, Kiatichai; Chomvarin, Chariya

2016-09-01

Emergence of multiple drug resistance in Vibrio cholerae has been increasing around the world including Northeast Thailand. In this study, 92 isolates of V. cholerae (50 O1 and 42 non-O1/non-O139 isolates) from clinical and environmental sources in Northeast Thailand were randomly selected and investigated for the presence of SXT element, class 1 integron and antimicrobial resistance genes. Genotypic-phenotypic concordance of antimicrobial resistance was also determined. Using PCR-based assays, 79% of V. cholerae isolates were positive for SXT element, whereas only 1% was positive for class 1 integron. SXT element harbored antimicrobial resistance genes, dfrA1 or dfr18, floR, strB, sul2, and tetA. Overall phenotypic-genotypic concordance of antimicrobial resistance was 78%, with highest and lowest value being for trimethoprim (83%) and chloramphenicol (70%), respectively. Ninety-two percent of V. cholerae O1 strains isolated from clinical sources harbored both dfrA1 (O1-specific trimethoprim resistance gene) and dfr18 (non-O1-specific trimethoprim resistance gene), whereas only 5% of V. cholerae non-O1/non-O139 strains harbored both genes. All V. cholerae O1 isolated from environmental source harbored dfr18 but 48% of V. cholerae non-O1/non-O139 harbored dfrA1. This study indicates that SXT element was the main contributor to the circulation of multiple-drug resistance determinants in V. cholerae strains in Northeast Thailand and that genetic exchange of SXT element can occur in both V. cholerae O1 and non-O1/non-O139 strains from clinical and environmental sources.

Comparative Roughness Characteristics of the Subducting Seafloor and Statistical Relationships with Seismogenic Potential, with Special Emphasis on Great Earthquakes

NASA Astrophysics Data System (ADS)

Lallemand, S.; Peyret, M.; van Rijsingen, E.; Arcay, D.

2017-12-01

Do some topographic features or morphological characteristics promote earthquake nucleation, large coseismic slip or creep ? To answer this question, we have developed a new database called "SubRough" which provides few roughness parameters at selected spatial wavelengths. Since the currently subducting topography is generally unknown, we assume that the bathymetry of the oceanic plates, a few hundreds of km seaward of the trench, is a reasonable proxy for determining the roughness of the subduction interface. Given the selected wavelengths in our roughness study (detailed below), we do not expect major changes when entering the subduction zone, even though the presence of a subduction channel or significant sediment offscrapping may alter it. Morphological objects characterized by high spatial frequencies (isolated seamounts or fracture zones) are likely to play a role in large events initiation or termination. Similarly, wide "smooth" areas may likely favor rupture propagation and thus large events, while ridges or plateaus may also play a specific role in seismic behavior. Consequently, we only retain the roughness components Rsw and Rlw that are comprised respectively within 2 wavelength bands: [12-20 km] and [80-100 km]. The choice of these wavelengths is constrained by the resolution of the bathymetry, the size of the studied area and the characteristic wavelengths of the seafloor topography. This new morphological information is then statistically analyzed to better understand how topographic features are modeled by roughness data. From a worldwide statistical point of view, fracture zones show similar amplitudes as mean seafloor at both wavelengths, which indicates that it is not possible to distinguish them from the background signal. Conversely, seamounts show roughness amplitudes about two times larger than the averaged ones at both wavelengths. Ridges and plateaus show Rlw amplitudes similar to seamounts but lower Rsw than seamounts. Finally, the roughness information is confronted to the spatial characteristics of earthquakes (epicenter location, slip distribution) along all subduction zones. We observe that most M>8.3 subduction earthquakes occurred in areas characterized by low Rsw and Rlw.

Surface roughness of Saturn's rings and ring particles inferred from thermal phase curves

NASA Astrophysics Data System (ADS)

Morishima, Ryuji; Turner, Neal J.; Spilker, Linda

2017-10-01

We analyze thermal phase curves of all the main rings of Saturn (the A, B, C rings, and the Cassini division) measured by both the far-IR and mid-IR detectors of the Cassini Composite InfraRed Spectrometer (CIRS). All the rings show temperature increases toward zero phase angle, known as an opposition effect or thermal beaming. For the C ring and Cassini division, which have low optical depths, intra-particle shadowing is considered the dominant mechanism causing the effect. On the other hand, the phase curves of the optically thick B and A rings steepen significantly with decreasing absolute solar elevation angle from 21° to 14°, suggesting inter-particle shadowing plays an important role in these rings. We employ an analytic roughness model to estimate the degrees of surface roughness of the rings or ring particles. For optically thin rings, an isolated particle covered by spherical segment craters is employed while for the thick rings we approximate a packed particle layer as a slab covered by craters. The particles in the thin rings are found to have generally rough surfaces, except in the middle C ring. Across the C ring, the optical depth correlates with the degree of surface roughness. This may indicate that surface roughness comes mainly from particle clumping, while individual particles have rather smooth surfaces. For the optically thick rings, the surface roughness of the particle layer is found to be moderate. The modeled phase curves of optically thick rings are shallow if the phase angle change is primarily due to change of observer azimuthal angle. On the other hand, the phase curves are steep if the phase angle change is due to change of observer elevation angle, as inter-particle shadows become visible at higher observer elevation. In addition, the area of shadowed facets increases with decreasing solar elevation angle. These combined effects explain the large seasonal change of the phase curve steepness observed for the thick rings. The degrees of surface roughness inferred from the thermal phase curves are generally less than those from the phase curves in visible light. This is probably explained by different roughness scales seen in thermal and visible light.

LMOOCs, Classifying Design: Survey Findings from LMOOC Providers

ERIC Educational Resources Information Center

Beirne, Elaine; Mhichíl, Mairéad Nic Giolla; Cleircín, Gearóid Ó

2017-01-01

Many of the major Massive Open Online Course (MOOC) platforms support learning approaches which can be roughly categorised as transmission-based and asynchronous (Morris & Lambe, 2014), with limited forms of interactive elements. Language learning is viewed within this study as an active process which includes knowledge, skills, and cultural…

A simple method to estimate threshold friction velocity of wind erosion in the field

USDA-ARS?s Scientific Manuscript database

Nearly all wind erosion models require the specification of threshold friction velocity (TFV). Yet determining TFV of wind erosion in field conditions is difficult as it depends on both soil characteristics and distribution of vegetation or other roughness elements. While several reliable methods ha...

Scattering of Acoustic Waves from Ocean Boundaries

DTIC Science & Technology

2014-09-30

of buried mines and improve SONAR performance in shallow water. OBJECTIVES 1) Determination of the correct physical model of acoustic propagation...Nicholas Chotiros, particularly for theoretical development of bulk acoustic /sediment modeling and laser roughness measurements. REFERENCES C...PUBLICATIONS 1. M. Isakson, and N. Chotiros. Finite Element Modeling of Acoustic

Title Sequences, Dress, Settings, and Such.

ERIC Educational Resources Information Center

Bell, John

Comparisons of television shows along genre lines suggest significant elements of aural/visual richness as well as valuable categories of comparison for future use in other comparisons. An examination of two sitcoms and two police shows produced roughly 25 years apart--"Make Room for Daddy" with "The Cosby Show" and "Naked…

A novel regulatory element (E77) isolated from CHO-K1 genomic DNA enhances stable gene expression in Chinese hamster ovary cells.

PubMed

Kang, Shin-Young; Kim, Yeon-Gu; Kang, Seunghee; Lee, Hong Weon; Lee, Eun Gyo

2016-05-01

Vectors flanked by regulatory DNA elements have been used to generate stable cell lines with high productivity and transgene stability; however, regulatory elements in Chinese hamster ovary (CHO) cells, which are the most widely used mammalian cells in biopharmaceutical production, are still poorly understood. We isolated a novel gene regulatory element from CHO-K1 cells, designated E77, which was found to enhance the stable expression of a transgene. A genomic library was constructed by combining CHO-K1 genomic DNA fragments with a CMV promoter-driven GFP expression vector, and the E77 element was isolated by screening. The incorporation of the E77 regulatory element resulted in the generation of an increased number of clones with high expression, thereby enhancing the expression level of the transgene in the stable transfectant cell pool. Interestingly, the E77 element was found to consist of two distinct fragments derived from different locations in the CHO genome shotgun sequence. High and stable transgene expression was obtained in transfected CHO cells by combining these fragments. Additionally, the function of E77 was found to be dependent on its site of insertion and specific orientation in the vector construct. Our findings demonstrate that stable gene expression mediated by the CMV promoter in CHO cells may be improved by the isolated novel gene regulatory element E77 identified in the present study. © 2016 The Authors. Biotechnology Journal published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance

PubMed Central

Li, Xinyue; Du, Yu; Du, Pengcheng; Dai, Hang; Fang, Yujie; Li, Zhenpeng; Lv, Na; Zhu, Baoli; Kan, Biao; Wang, Duochun

2016-01-01

SXT/R391 integrative and conjugative elements (ICEs) are self-transmissible mobile genetic elements that are found in most members of Enterobacteriaceae. Here, we determined fifteen SXT/R391 ICEs carried by Proteus isolates from food (4.2%) and diarrhoea patients (17.3%). BLASTn searches against GenBank showed that the fifteen SXT/R391 ICEs were closely related to that from different Enterobacteriaceae species, including Proteus mirabilis. Using core gene phylogenetic analysis, the fifteen SXT/R391 ICEs were grouped into six distinct clusters, including a dominant cluster and three clusters that have not been previously reported in Proteus isolates. The SXT/R391 ICEs shared a common structure with a set of conserved genes, five hotspots and two variable regions, which contained more foreign genes, including drug-resistance genes. Notably, a class A β-lactamase gene was identified in nine SXT/R391 ICEs. Collectively, the ICE-carrying isolates carried resistance genes for 20 tested drugs. Six isolates were resistant to chloramphenicol, kanamycin, streptomycin, trimethoprim-sulfamethoxazole, sulfisoxazole and tetracycline, which are drug resistances commonly encoded by ICEs. Our results demonstrate abundant genetic diversity and multidrug resistance of the SXT/R391 ICEs carried by Proteus isolates, which may have significance for public health. It is therefore necessary to continuously monitor the antimicrobial resistance and related mobile elements among Proteus isolates. PMID:27892525

Mobile genetic elements of Pseudomonas aeruginosa isolates from hydrotherapy facility and respiratory infections.

PubMed

Pereira, S G; Cardoso, O

2014-03-01

The content of mobile genetic elements in Pseudomonas aeruginosa isolates of a pristine natural mineral water system associated with healthcare was compared with clinical isolates from respiratory infections. One isolate, from the therapy pool circuit, presented a class 1 integron, with 100% similarity to a class 1 integron contained in plasmid p4800 of the Klebsiella pneumoniae Kp4800 strain, which is the first time it has been reported in P. aeruginosa. Class 1 integrons were found in 25.6% of the clinical isolates. PAGI1 orf3 was more prevalent in environmental isolates, while PAGI2 c105 and PAGI3 sg100 were more prevalent in clinical isolates. Plasmids were not observed in either population. © 2013 The Authors Clinical Microbiology and Infection © 2013 European Society of Clinical Microbiology and Infectious Diseases.

Heat Transfer Enhancement By Three-Dimensional Surface Roughness Technique In Nuclear Fuel Rod Bundles

NASA Astrophysics Data System (ADS)

Najeeb, Umair

This thesis experimentally investigates the enhancement of single-phase heat transfer, frictional loss and pressure drop characteristics in a Single Heater Element Loop Tester (SHELT). The heater element simulates a single fuel rod for Pressurized Nuclear reactor. In this experimental investigation, the effect of the outer surface roughness of a simulated nuclear rod bundle was studied. The outer surface of a simulated fuel rod was created with a three-dimensional (Diamond-shaped blocks) surface roughness. The angle of corrugation for each diamond was 45 degrees. The length of each side of a diamond block is 1 mm. The depth of each diamond block was 0.3 mm. The pitch of the pattern was 1.614 mm. The simulated fuel rod had an outside diameter of 9.5 mm and wall thickness of 1.5 mm and was placed in a test-section made of 38.1 mm inner diameter, wall thickness 6.35 mm aluminum pipe. The Simulated fuel rod was made of Nickel 200 and Inconel 625 materials. The fuel rod was connected to 10 KW DC power supply. The Inconel 625 material of the rod with an electrical resistance of 32.3 kO was used to generate heat inside the test-section. The heat energy dissipated from the Inconel tube due to the flow of electrical current flows into the working fluid across the rod at constant heat flux conditions. The DI water was employed as working fluid for this experimental investigation. The temperature and pressure readings for both smooth and rough regions of the fuel rod were recorded and compared later to find enhancement in heat transfer coefficient and increment in the pressure drops. Tests were conducted for Reynold's Numbers ranging from 10e4 to 10e5. Enhancement in heat transfer coefficient at all Re was recorded. The maximum heat transfer co-efficient enhancement recorded was 86% at Re = 4.18e5. It was also observed that the pressure drop and friction factor increased by 14.7% due to the increased surface roughness.

A dynamic subgrid-scale parameterization of the effective wall stress in atmospheric boundary layer flows over multiscale, fractal-like surfaces

NASA Astrophysics Data System (ADS)

Anderson, William; Meneveau, Charles

2010-05-01

A dynamic subgrid-scale (SGS) parameterization for hydrodynamic surface roughness is developed for large-eddy simulation (LES) of atmospheric boundary layer (ABL) flow over multiscale, fractal-like surfaces. The model consists of two parts. First, a baseline model represents surface roughness at horizontal length-scales that can be resolved in the LES. This model takes the form of a force using a prescribed drag coefficient. This approach is tested in LES of flow over cubes, wavy surfaces, and ellipsoidal roughness elements for which there are detailed experimental data available. Secondly, a dynamic roughness model is built, accounting for SGS surface details of finer resolution than the LES grid width. The SGS boundary condition is based on the logarithmic law of the wall, where the unresolved roughness of the surface is modeled as the product of local root-mean-square (RMS) of the unresolved surface height and an unknown dimensionless model coefficient. This coefficient is evaluated dynamically by comparing the plane-average hydrodynamic drag at two resolutions (grid- and test-filter scale, Germano et al., 1991). The new model is tested on surfaces generated through superposition of random-phase Fourier modes with prescribed, power-law surface-height spectra. The results show that the method yields convergent results and correct trends. Limitations and further challenges are highlighted. Supported by the US National Science Foundation (EAR-0609690).

X-33 Hypersonic Boundary Layer Transition

NASA Technical Reports Server (NTRS)

Berry, Scott A.; Horvath, Thomas J.; Hollis, Brian R.; Thompson, Richard A.; Hamilton, H. Harris, II

1999-01-01

Boundary layer and aeroheating characteristics of several X-33 configurations have been experimentally examined in the Langley 20-Inch Mach 6 Air Tunnel. Global surface heat transfer distributions, surface streamline patterns, and shock shapes were measured on 0.013-scale models at Mach 6 in air. Parametric variations include angles-of-attack of 20-deg, 30-deg, and 40-deg; Reynolds numbers based on model length of 0.9 to 6.6 million; and body-flap deflections of 0, 10 and 20-deg. The effects of discrete and distributed roughness elements on boundary layer transition, which included trip height, size, location, and distribution, both on and off the windward centerline, were investigated. The discrete roughness results on centerline were used to provide a transition correlation for the X-33 flight vehicle that was applicable across the range of reentry angles of attack. The attachment line discrete roughness results were shown to be consistent with the centerline results, as no increased sensitivity to roughness along the attachment line was identified. The effect of bowed panels was qualitatively shown to be less effective than the discrete trips; however, the distributed nature of the bowed panels affected a larger percent of the aft-body windward surface than a single discrete trip.

Feedback effect of base roughness on particle size segregation in bidisperse granular avalanche

NASA Astrophysics Data System (ADS)

Jing, L.; Kwok, F.

2017-12-01

Particle size segregation in a geophysical flow interplays with base roughness, leading to rich behaviors such as bouldery front formation and fingering instability. The interplay originates mainly from the fact that larger particles slip more easily on a slope, the slip affects the progress of segregation, and segregation changes the size of particles contacting the slope. Recent studies show that slip velocity scales with geometric roughness (which involves both the size and spacing of base particles), and the roughness becomes a function of time during segregation. However, at least two questions remain unanswered: 1) In addition to geometric roughness, what is the role of mechanical parameters at boundaries? 2) To what extent the findings from steady flows are valid in a transient system, which is more common in actual geophysical flows? Here we study two configurations using the discrete element method, the first being a steady flow with periodic boundaries, where we vary the size, spatial arrangement, and contact parameters of base particles. The second consists in dambreak-type bidisperse granular avalanches over inclined planes, where the degree of segregation, base roughness, flow thickness, and base velocity are measured locally as the flow evolves. We found that: 1) On a frictional plane in the absence of geometric roughness, the friction parameter μ controls the amount of basal slip. A lower μ leads to a slower segregation. 2) On a bumpy base with low geometric roughness (where slip still occurs), the effect of μ becomes marginal, while the coefficient of restitution e controls the slip velocity; this indicates the significance of normal collision in the working mechanism of a bumpy base. Upon sliding, large particles near the base may exhibit an ordered state where shear is poorly developed, which delays the onset of segregation. 3) Both μ and e have no influence when the geometric roughness is sufficient to sustain a nonslip condition. Our results suggest the feedback effect of base roughness on segregation, which has a theoretical significance in the boundary treatment when modeling geophysical flows. The study also shows the possibility to establish a universal scaling law correlating slip velocity, base roughness, and the degree of segregation in both steady and unsteady flows.

Compact DFB laser modules with integrated isolator at 935 nm

NASA Astrophysics Data System (ADS)

Reggentin, M.; Thiem, H.; Tsianos, G.; Malach, M.; Hofmann, J.; Plocke, T.; Kneier, M.; Richter, L.

2018-02-01

New developments in industrial applications and applications under rough environmental conditions within the field of spectroscopy and quantum technology in the 935 nm wavelength regime demand new compact, stable and robust laser systems. Beside a stable laser source the integration of a compact optical isolator is necessary to reduce size and power consumption for the whole laser system. The integration of a suitable optical isolator suppresses back reflections from the following optical system efficiently. However, the miniaturization of the optics inside the package leads to high optical power density levels that make a more detailed analysis of the components and their laser damage threshold necessary. We present test results on compact stable DFB laser sources (butterfly style packages) with newly integrated optical isolators operating around 935 nm. The presented data includes performance and lifetime tests for the laser diodes as well as package components. Overall performance data of the packaged laser diodes will be shown as well.

Biotransformation of Tributyltin chloride by Pseudomonas stutzeri strain DN2

PubMed Central

Khanolkar, Dnyanada S.; Naik, Milind Mohan; Dubey, Santosh Kumar

2014-01-01

A bacterial isolate capable of utilizing tributyltin chloride (TBTCl) as sole carbon source was isolated from estuarine sediments of west coast of India and identified as Pseudomonas stutzeri based on biochemical tests and Fatty acid methyl ester (FAME) analysis. This isolate was designated as strain DN2. Although this bacterial isolate could resist up to 3 mM TBTCl level, it showed maximum growth at 2 mM TBTCl in mineral salt medium (MSM). Pseudomonas stutzeri DN2 exposed to 2 mM TBTCl revealed significant alteration in cell morphology as elongation and shrinkage in cell size along with roughness of cell surface. FTIR and NMR analysis of TBTCl degradation product extracted using chloroform and purified using column chromatography clearly revealed biotransformation of TBTCl into Dibutyltin dichloride (DBTCl2) through debutylation process. Therefore, Pseudomonas stutzeri strain DN2 may be used as a potential bacterial strain for bioremediation of TBTCl contaminated aquatic environmental sites. PMID:25763027

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

PubMed Central

Giresi, Paul G.; Kim, Jonghwan; McDaniell, Ryan M.; Iyer, Vishwanath R.; Lieb, Jason D.

2007-01-01

DNA segments that actively regulate transcription in vivo are typically characterized by eviction of nucleosomes from chromatin and are experimentally identified by their hypersensitivity to nucleases. Here we demonstrate a simple procedure for the isolation of nucleosome-depleted DNA from human chromatin, termed FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements). To perform FAIRE, chromatin is crosslinked with formaldehyde in vivo, sheared by sonication, and phenol-chloroform extracted. The DNA recovered in the aqueous phase is fluorescently labeled and hybridized to a DNA microarray. FAIRE performed in human cells strongly enriches DNA coincident with the location of DNaseI hypersensitive sites, transcriptional start sites, and active promoters. Evidence for cell-type–specific patterns of FAIRE enrichment is also presented. FAIRE has utility as a positive selection for genomic regions associated with regulatory activity, including regions traditionally detected by nuclease hypersensitivity assays. PMID:17179217

Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements

PubMed Central

Gowda, Malali

2016-01-01

Blast disease caused by the Magnaporthe species is a major factor affecting the productivity of rice, wheat and millets. This study was aimed at generating genomic information for rice and non-rice Magnaporthe isolates to understand the extent of genetic variation. We have sequenced the whole genome of the Magnaporthe isolates, infecting rice (leaf and neck), finger millet (leaf and neck), foxtail millet (leaf) and buffel grass (leaf). Rice and finger millet isolates infecting both leaf and neck tissues were sequenced, since the damage and yield loss caused due to neck blast is much higher as compared to leaf blast. The genome-wide comparison was carried out to study the variability in gene content, candidate effectors, repeat element distribution, genes involved in carbohydrate metabolism and SNPs. The analysis of repeat element footprints revealed some genes such as naringenin, 2-oxoglutarate 3-dioxygenase being targeted by Pot2 and Occan, in isolates from different host species. Some repeat insertions were host-specific while other insertions were randomly shared between isolates. The distributions of repeat elements, secretory proteins, CAZymes and SNPs showed significant variation across host-specific lineages of Magnaporthe indicating an independent genome evolution orchestrated by multiple genomic factors. PMID:27658241

The improvement of laser induced damage resistance of optical workpiece surface by hydrodynamic effect polishing

NASA Astrophysics Data System (ADS)

Peng, Wenqiang; Guan, Chaoliang; Li, Shengyi; Wang, Zhuo

2016-10-01

Surface and subsurface damage in optical element will greatly decrease the laser induced damage threshold (LIDT) in the intense laser optical system. Processing damage on the workpiece surface can be inevitably caused when the material is removed in brittle or plastic mode. As a non-contact polishing technology, hydrodynamic effect polishing (HEP) shows very good performance on generating an ultra-smooth surface without damage. The material is removed by chemisorption between nanoparticle and workpiece surface in the elastic mode in HEP. The subsurface damage and surface scratches can be effectively removed after the polishing process. Meanwhile ultra-smooth surface with atomic level surface roughness can be achieved. To investigate the improvement of LIDT of optical workpiece, polishing experiment was conducted on a magnetorheological finishing (MRF) silica glass sample. AFM measurement results show that all the MRF directional plastic marks have been removed clearly and the root-mean-square (rms) surface roughness has decreased from 0.673nm to 0.177nm after HEP process. Laser induced damage experiment was conducted with laser pulse of 1064nm wavelength and 10ns time width. Compared with the original state, the LEDT of the silica glass sample polished by HEP has increased from 29.78J/cm2 to 45.47J/cm2. It demonstrates that LIDT of optical element treated by HEP can be greatly improved for ultra low surface roughness and nearly defect-free surface/subsurface.

Mapping urban porosity and roughness characteristics as a mean of defining urban ventilation corridors

NASA Astrophysics Data System (ADS)

Wicht, Marzena; Wicht, Andreas; Osińska-Skotak, Katarzyna

2017-10-01

Cities can be characterized with the roughest aerodynamic boundaries, which results in the enhanced turbulent motion and increased drag effect. This leads to reduced wind speeds and directly increases negative effects of living within urban areas. Urban Heat Island, decreased air quality or densely built-up residential/industrial areas occur in many cities, both in temperate and tropical regions, and are included in these negative effects. This case study investigates Warsaw, the capital of Poland, representing a dense, urban environment, located in the temperate zone. It suffers from immense air pollution levels, as well as Urban Heat Island, and the local government is seeking ways to resolve these issues. Among many mitigation techniques, air restoration and exchange system were suggested as appropriate measures, as they address many of the aforementioned issues. The essential elements of such system are ventilation corridors. This paper describes mapping these corridors utilizing the morphometric methods of urban roughness aided by remote sensing data. We focus especially on the terrain topology and texture of single elements, including high vegetation canopy layer. This study considers DSM and different porosity of obstacles, deriving a new outlook at the morphometric methods as a way to improve them. The mapped areas of low roughness characteristics might be appointed as ventilation corridors and play a crucial role in air restoration and exchange system. They may also be included in further planning processes by the local government as preservation areas.

Clinical Isolates of Vibrio cholerae O1 El Tor Ogawa of 2009 from Kolkata, India: Preponderance of SXT Element and Presence of Haitian ctxB Variant

PubMed Central

Kutar, Braj M. R. N. S.; Rajpara, Neha; Upadhyay, Hardik; Ramamurthy, Thandavarayan; Bhardwaj, Ashima K.

2013-01-01

Background Increase in the number of multidrug resistant pathogens and the accompanied rise in case fatality rates has hampered the treatment of many infectious diseases including cholera. Unraveling the mechanisms responsible for multidrug resistance in the clinical isolates of Vibrio cholerae would help in understanding evolution of these pathogenic bacteria and their epidemic potential. This study was carried out to identify genetic factors responsible for multiple drug resistance in clinical isolates of Vibrio cholerae O1, serotype Ogawa, biotype El Tor isolated from the patients admitted to the Infectious Diseases Hospital, Kolkata, India, in 2009. Methodology/Principal Findings One hundred and nineteen clinical isolates of V. cholerae were analysed for their antibiotic resistance phenotypes. Antibiogram analysis revealed that majority of the isolates showed resistance to co-trimoxazole, nalidixic acid, polymixin B and streptomycin. In PCR, SXT integrase was detected in 117 isolates and its sequence showed 99% identity notably to ICEVchInd5 from Sevagram, India, ICEVchBan5 from Bangladesh and VC1786ICE sequence from Haiti outbreak among others. Antibiotic resistance traits corresponding to SXT element were transferred from the parent Vibrio isolate to the recipient E. coli XL-1 Blue cells during conjugation. Double-mismatch-amplification mutation assay (DMAMA) revealed the presence of Haitian type ctxB allele of genotype 7 in 55 isolates and the classical ctxB allele of genotype 1 in 59 isolates. Analysis of topoisomerase sequences revealed the presence of mutation Ser83 → Ile in gyrA and Ser85→ Leu in parC. This clearly showed the circulation of SXT-containing V. cholerae as causative agent for cholera in Kolkata. Conclusions There was predominance of SXT element in these clinical isolates from Kolkata region which also accounted for their antibiotic resistance phenotype typical of this element. DMAMA PCR showed them to be a mixture of isolates with different ctxB alleles like classical, El Tor and Haitian variants. PMID:23431378

Quality of water and sediment in streams affected by historical mining, and quality of Mine Tailings, in the Rio Grande/Rio Bravo Basin, Big Bend Area of the United States and Mexico, August 2002

USGS Publications Warehouse

Lambert, Rebecca B.; Kolbe, Christine M.; Belzer, Wayne

2008-01-01

The U.S. Geological Survey, in cooperation with the International Boundary and Water Commission - U.S. and Mexican Sections, the National Park Service, the Texas Commission on Environmental Quality, the Secretaria de Medio Ambiente y Recursos Naturales in Mexico, the Area de Proteccion de Flora y Fauna Canon de Santa Elena in Mexico, and the Area de Proteccion de Flora y Fauna Maderas del Carmen in Mexico, collected samples of stream water, streambed sediment, and mine tailings during August 2002 for a study to determine whether trace elements from abandoned mines in the area in and around Big Bend National Park have affected the water and sediment quality in the Rio Grande/Rio Bravo Basin of the United States and Mexico. Samples were collected from eight sites on the main stem of the Rio Grande/Rio Bravo, four Rio Grande/Rio Bravo tributary sites downstream from abandoned mines or mine-tailing sites, and 11 mine-tailing sites. Mines in the area were operated to produce fluorite, germanium, iron, lead, mercury, silver, and zinc during the late 1800s through at least the late 1970s. Moderate (relatively neutral) pHs in stream-water samples collected at the 12 Rio Grande/Rio Bravo main-stem and tributary sites indicate that water is well mixed, diluted, and buffered with respect to the solubility of trace elements. The highest sulfate concentrations were in water samples from tributaries draining the Terlingua mining district. Only the sample from the Rough Run Draw site exceeded the Texas Surface Water Quality Standards general-use protection criterion for sulfate. All chloride and dissolved solids concentrations in water samples were less than the general-use protection criteria. Aluminum, copper, mercury, nickel, selenium, and zinc were detected in all water samples for which each element was analyzed. Cadmium, chromium, and lead were detected in samples less frequently, and silver was not detected in any of the samples. None of the sample concentrations of aluminum, cadmium, chromium, nickel, selenium, and zinc exceeded the Texas Surface Water Quality Standards criteria for aquatic life-use protection or human health. The only trace elements detected in the water samples at concentrations exceeding the Texas Surface Water Quality Standards criterion for human health (fish consumption use) was lead at one site and mercury at 10 of 12 sites. Relatively high mercury concentrations distributed throughout the area might indicate sources of mercury in addition to abandoned mining areas. Streambed-sediment samples were collected from 12 sites and analyzed for 44 major and trace elements. In general, the trace elements detected in streambed-sediment samples were low in concentration, interpreted as consistent with background concentrations. Concentrations at two sites, however, were elevated compared to Texas Commission on Environmental Quality criteria. Concentrations of antimony, arsenic, cadmium, lead, silver, and zinc in the sample from San Carlos Creek downstream from La Esperanza (San Carlos) Mine exceeded the Texas Commission on Environmental Quality screening levels for sediment. The sample from Rough Run Draw, downstream from the Study Butte Mine, also showed elevated concentrations of arsenic, cadmium, and lead, but these concentrations were much lower than those in the San Carlos Creek sample and did not exceed screening levels. Elevated concentrations of multiple trace elements in streambed-sediment samples from San Carlos Creek and Rough Run Draw indicate that San Carlos Creek, and probably Rough Run Draw, have been adversely affected by mining activities. Fourteen mine-tailing samples from 11 mines were analyzed for 25 major and trace elements. All trace elements except selenium and thallium were detected in one or more samples. The highest lead concentrations were detected in tailings samples from the Boquillas, Puerto Rico, La Esperanza (San Carlos), and Tres Marias Mines, as might be expected because the tailings ar

Optical scattering from rough-rolled aluminum surfaces.

PubMed

Rönnelid, M; Adsten, M; Lindström, T; Nostell, P; Wäckelgård, E

2001-05-01

Bidirectional, angular resolved scatterometry was used to evaluate the feasibility of using rolled aluminum as reflectors in solar thermal collectors and solar cells. Two types of rolled aluminum with different surface roughnesses were investigated. The results show that the smoother of the two samples [rms height, (0.20 ? 0.02) mum] can be used as a nonimaging, concentrating reflector with moderate reflection losses compared with those of optically smooth aluminum reflectors. The sample with the rougher surface [rms height, (0.6 ? 0.1) mum] is not suitable as a concentrating element but can be used as planar reflectors. The orientation of the rolling grooves is then of importance for minimizing reflection losses in the system.

Aerodynamics and thermal physics of helicopter ice accretion

NASA Astrophysics Data System (ADS)

Han, Yiqiang

Ice accretion on aircraft introduces significant loss in airfoil performance. Reduced lift-to- drag ratio reduces the vehicle capability to maintain altitude and also limits its maneuverability. Current ice accretion performance degradation modeling approaches are calibrated only to a limited envelope of liquid water content, impact velocity, temperature, and water droplet size; consequently inaccurate aerodynamic performance degradations are estimated. The reduced ice accretion prediction capabilities in the glaze ice regime are primarily due to a lack of knowledge of surface roughness induced by ice accretion. A comprehensive understanding of the ice roughness effects on airfoil heat transfer, ice accretion shapes, and ultimately aerodynamics performance is critical for the design of ice protection systems. Surface roughness effects on both heat transfer and aerodynamic performance degradation on airfoils have been experimentally evaluated. Novel techniques, such as ice molding and casting methods and transient heat transfer measurement using non-intrusive thermal imaging methods, were developed at the Adverse Environment Rotor Test Stand (AERTS) facility at Penn State. A novel heat transfer scaling method specifically for turbulent flow regime was also conceived. A heat transfer scaling parameter, labeled as Coefficient of Stanton and Reynolds Number (CSR = Stx/Rex --0.2), has been validated against reference data found in the literature for rough flat plates with Reynolds number (Re) up to 1x107, for rough cylinders with Re ranging from 3x104 to 4x106, and for turbine blades with Re from 7.5x105 to 7x106. This is the first time that the effect of Reynolds number is shown to be successfully eliminated on heat transfer magnitudes measured on rough surfaces. Analytical models for ice roughness distribution, heat transfer prediction, and aerodynamics performance degradation due to ice accretion have also been developed. The ice roughness prediction model was developed based on a set of 82 experimental measurements and also compared to existing predictions tools. Two reference predictions found in the literature yielded 76% and 54% discrepancy with respect to experimental testing, whereas the proposed ice roughness prediction model resulted in a 31% minimum accuracy in prediction. It must be noted that the accuracy of the proposed model is within the ice shape reproduction uncertainty of icing facilities. Based on the new ice roughness prediction model and the CSR heat transfer scaling method, an icing heat transfer model was developed. The approach achieved high accuracy in heat transfer prediction compared to experiments conducted at the AERTS facility. The discrepancy between predictions and experimental results was within +/-15%, which was within the measurement uncertainty range of the facility. By combining both the ice roughness and heat transfer predictions, and incorporating the modules into an existing ice prediction tool (LEWICE), improved prediction capability was obtained, especially for the glaze regime. With the available ice shapes accreted at the AERTS facility and additional experiments found in the literature, 490 sets of experimental ice shapes and corresponding aerodynamics testing data were available. A physics-based performance degradation empirical tool was developed and achieved a mean absolute deviation of 33% when compared to the entire experimental dataset, whereas 60% to 243% discrepancies were observed using legacy drag penalty prediction tools. Rotor torque predictions coupling Blade Element Momentum Theory and the proposed drag performance degradation tool was conducted on a total of 17 validation cases. The coupled prediction tool achieved a 10% predicting error for clean rotor conditions, and 16% error for iced rotor conditions. It was shown that additional roughness element could affect the measured drag by up to 25% during experimental testing, emphasizing the need of realistic ice structures during aerodynamics modeling and testing for ice accretion.

A suggested periodic table up to Z≤ 172, based on Dirac-Fock calculations on atoms and ions.

PubMed

Pyykkö, Pekka

2011-01-07

Extended Average Level (EAL) Dirac-Fock calculations on atoms and ions agree with earlier work in that a rough shell-filling order for the elements 119-172 is 8s < 5g≤ 8p(1/2) < 6f < 7d < 9s < 9p(1/2) < 8p(3/2). The present Periodic Table develops further that of Fricke, Greiner and Waber [Theor. Chim. Acta 1971, 21, 235] by formally assigning the elements 121-164 to (nlj) slots on the basis of the electron configurations of their ions. Simple estimates are made for likely maximum oxidation states, i, of these elements M in their MX(i) compounds, such as i = 6 for UF(6). Particularly high i are predicted for the 6f elements.

Slip as the basic mechanism for formation of deformation relief structural elements

NASA Astrophysics Data System (ADS)

Lychagin, D. V.; Alfyorova, E. A.

2017-07-01

The experimental results of investigation of the nickel single crystal surface morphology after compression deformation are presented. The quasi-periodic character of the deformation profile, common for shear deformation of different types of relief structural elements, is found. It is demonstrated that the morphological manifestation of these structural elements is determined by local shear systems along octahedral planes. The regularities of the deformation structure in these regions defining the material extrusion and intrusion regions and the specific features of disorientation accumulation are established. If reorientation of local regions takes part in the relief element formation, along with octahedral slip, much stronger growth of the surface area is observed. The possibility of application of two-dimensional and three-dimensional surface roughness parameters for description of deformation relief is considered.

Turbulent Plume Dispersion over Two-dimensional Idealized Urban Street Canyons

NASA Astrophysics Data System (ADS)

Wong, C. C. C.; Liu, C. H.

2012-04-01

Human activities are the primary pollutant sources which degrade the living quality in the current era of dense and compact cities. A simple and reasonably accurate pollutant dispersion model is helpful to reduce pollutant concentrations in city or neighborhood scales by refining architectural design or urban planning. The conventional method to estimate the pollutant concentration from point/line sources is the Gaussian plume model using empirical dispersion coefficients. Its accuracy is pretty well for applying to rural areas. However, the dispersion coefficients only account for the atmospheric stability and streamwise distance that often overlook the roughness of urban surfaces. Large-scale buildings erected in urban areas significantly modify the surface roughness that in turn affects the pollutant transport in the urban canopy layer (UCL). We hypothesize that the aerodynamic resistance is another factor governing the dispersion coefficient in the UCL. This study is thus conceived to study the effects of urban roughness on pollutant dispersion coefficients and the plume behaviors. Large-eddy simulations (LESs) are carried out to examine the plume dispersion from a ground-level pollutant source over idealized 2D street canyons in neutral stratification. Computations with a wide range of aspect ratios (ARs), including skimming flow to isolated flow regimes, are conducted. The vertical profiles of pollutant distribution for different values of friction factor are compared that all reach a self-similar Gaussian shape. Preliminary results show that the pollutant dispersion is closely related to the friction factor. For relatively small roughness, the factors of dispersion coefficient vary linearly with the friction factor until the roughness is over a certain level. When the friction factor is large, its effect on the dispersion coefficient is less significant. Since the linear region covers at least one-third of the full range of friction factor in our empirical analysis, urban roughness is a major factor for dispersion coefficient. The downstream air quality could then be a function of both atmospheric stability and urban roughness.

Recombinations in Staphylococcal Cassette Chromosome mec Elements Compromise the Molecular Detection of Methicillin Resistance in Staphylococcus aureus

PubMed Central

Hill-Cawthorne, Grant A.; Hudson, Lyndsey O.; El Ghany, Moataz Fouad Abd; Piepenburg, Olaf; Nair, Mridul; Dodgson, Andrew; Forrest, Matthew S.

2014-01-01

Clinical laboratories are increasingly using molecular tests for methicillin-resistant Staphylococcus aureus (MRSA) screening. However, primers have to be targeted to a variable chromosomal region, the staphylococcal cassette chromosome mec (SCCmec). We initially screened 726 MRSA isolates from a single UK hospital trust by recombinase polymerase amplification (RPA), a novel, isothermal alternative to PCR. Undetected isolates were further characterised using multilocus sequence, spa typing and whole genome sequencing. 96% of our tested phenotypically MRSA isolates contained one of the six orfX-SCCmec junctions our RPA test and commercially available molecular tests target. However 30 isolates could not be detected. Sequencing of 24 of these isolates demonstrated recombinations within the SCCmec element with novel insertions that interfered with the RPA, preventing identification as MRSA. This result suggests that clinical laboratories cannot rely solely upon molecular assays to reliably detect all methicillin-resistance. The presence of significant recombinations in the SCCmec element, where the majority of assays target their primers, suggests that there will continue to be isolates that escape identification. We caution that dependence on amplification-based molecular assays will continue to result in failure to diagnose a small proportion (∼4%) of MRSA isolates, unless the true level of SCCmec natural diversity is determined by whole genome sequencing of a large collection of MRSA isolates. PMID:24972080

Supersonic turbulent boundary layers with periodic mechanical non-equilibrium

NASA Astrophysics Data System (ADS)

Ekoto, Isaac Wesley

Previous studies have shown that favorable pressure gradients reduce the turbulence levels and length scales in supersonic flow. Wall roughness has been shown to reduce the large-scales in wall bounded flow. Based on these previous observations new questions have been raised. The fundamental questions this dissertation addressed are: (1) What are the effects of wall topology with sharp versus blunt leading edges? and (2) Is it possible that a further reduction of turbulent scales can occur if surface roughness and favorable pressure gradients are combined? To answer these questions and to enhance the current experimental database, an experimental analysis was performed to provide high fidelity documentation of the mean and turbulent flow properties along with surface and flow visualizations of a high-speed (M = 2.86), high Reynolds number (Retheta ≈ 60,000) supersonic turbulent boundary layer distorted by curvature-induced favorable pressure gradients and large-scale ( k+s ≈ 300) uniform surface roughness. Nine models were tested at three separate locations. Three pressure gradient models strengths (a nominally zero, a weak, and a strong favorable pressure gradient) and three roughness topologies (aerodynamically smooth, square, and diamond shaped roughness elements) were used. Highly resolved planar measurements of mean and fluctuating velocity components were accomplished using particle image velocimetry. Stagnation pressure profiles were acquired with a traversing Pitot probe. Surface pressure distributions were characterized using pressure sensitive paint. Finally flow visualization was accomplished using schlieren photographs. Roughness topology had a significant effect on the boundary layer mean and turbulent properties due to shock boundary layer interactions. Favorable pressure gradients had the expected stabilizing effect on turbulent properties, but the improvements were less significant for models with surface roughness near the wall due to increased tendency towards flow separation. It was documented that proper roughness selection coupled with a sufficiently strong favorable pressure gradient produced regions of "negative" production in the transport of turbulent stress. This led to localized areas of significant turbulence stress reduction. With proper roughness selection and sufficient favorable pressure gradient strength, it is believed that localized relaminarization of the boundary layer is possible.

Globular Cluster Systems in Interacting Galaxies

NASA Astrophysics Data System (ADS)

Zepf, S.; Murdin, P.

2000-11-01

GLOBULAR CLUSTERS are dynamically bound and dense collections of large numbers of coeval stars. Typical globular clusters have roughly one million stars within a radius of a few parsecs. They are also usually close to spherical, hence the name globular. By virtue of their rich, isolated population of stars they provide an important laboratory for studies of STELLAR EVOLUTION. Moreover, because of...

Simulation analysis of air flow and turbulence statistics in a rib grit roughened duct.

PubMed

Vogiatzis, I I; Denizopoulou, A C; Ntinas, G K; Fragos, V P

2014-01-01

The implementation of variable artificial roughness patterns on a surface is an effective technique to enhance the rate of heat transfer to fluid flow in the ducts of solar air heaters. Different geometries of roughness elements investigated have demonstrated the pivotal role that vortices and associated turbulence have on the heat transfer characteristics of solar air heater ducts by increasing the convective heat transfer coefficient. In this paper we investigate the two-dimensional, turbulent, unsteady flow around rectangular ribs of variable aspect ratios by directly solving the transient Navier-Stokes and continuity equations using the finite elements method. Flow characteristics and several aspects of turbulent flow are presented and discussed including velocity components and statistics of turbulence. The results reveal the impact that different rib lengths have on the computed mean quantities and turbulence statistics of the flow. The computed turbulence parameters show a clear tendency to diminish downstream with increasing rib length. Furthermore, the applied numerical method is capable of capturing small-scale flow structures resulting from the direct solution of Navier-Stokes and continuity equations.

Physical Mechanisms of Glaze Ice Scallop Formations on Swept Wings

NASA Technical Reports Server (NTRS)

Vargas, Mario; Reshotko, Eli

1998-01-01

An experiment was conducted to understand the physical mechanisms that lead to the formation of scallops on swept wings. Icing runs were performed on a NACA 0012 swept wing tip at 45 deg, 30 deg, and 15 deg sweep angles. A baseline case was chosen and direct measurements of scallop height and spacing, castings, video data and close-up photographic data were obtained. The results showed the scallops are made of glaze ice feathers that grow from roughness elements that have reached a minimum height and are located beyond a given distance from the attachment line. This distance depends on tunnel conditions and sweep angle, and is the critical parameter in the formation of scallops. It determines if complete scallops, incomplete scallops or no scallops are going to be formed. The mechanisms of growth for complete and incomplete scallops were identified. The effect of velocity, temperature and LWC on scallop formation was studied. The possibility that cross flow instability may be the physical mechanism that triggers the growth of roughness elements into glaze ice feathers is examined.

Effects of the interface roughness in metal-adhesive-metal structure on the propagation of shear horizontal waves.

PubMed

Ech Cherif El Kettani, Mounsif; Leduc, Damien; Potel, Catherine; Bruneau, Michel; Foze, Ludovic; Predoi, Mihai

2017-06-01

The influence of the interface roughness in a three-layer metal-adhesive-metal structure on the propagation of shear horizontal waves and more particularly on the transmission coefficient versus the frequency is studied in the particular case of a periodic grating of triangular grooves. For given phonon frequencies, the interaction of an incident shear horizontal mode with the periodical grating gives rise to a retro-converted mode. A numerical finite element simulation permits us to predict the existence of the phonon mode in the three-layer structure and to obtain the evolution of the transmission coefficient around the phonon frequency. An experimental study, based on a generation of waves by a piezocomposite contact transducer and a reception by a laser vibrometer, then confirms these predictions. Finally, a parametric numerical study is performed: the influence of the depth of the roughness and of the number of spatial periods of the grooves on the transmission coefficient is studied.

Modification of the large-scale features of high Reynolds number wall turbulence by passive surface obtrusions

NASA Astrophysics Data System (ADS)

Monty, J. P.; Allen, J. J.; Lien, K.; Chong, M. S.

2011-12-01

A high Reynolds number boundary-layer wind-tunnel facility at New Mexico State University was fitted with a regularly distributed braille surface. The surface was such that braille dots were closely packed in the streamwise direction and sparsely spaced in the spanwise direction. This novel surface had an unexpected influence on the flow: the energy of the very large-scale features of wall turbulence (approximately six-times the boundary-layer thickness in length) became significantly attenuated, even into the logarithmic region. To the author's knowledge, this is the first experimental study to report a modification of `superstructures' in a rough-wall turbulent boundary layer. The result gives rise to the possibility that flow control through very small, passive surface roughness may be possible at high Reynolds numbers, without the prohibitive drag penalty anticipated heretofore. Evidence was also found for the uninhibited existence of the near-wall cycle, well known to smooth-wall-turbulence researchers, in the spanwise space between roughness elements.

Dissolution of minerals with rough surfaces

NASA Astrophysics Data System (ADS)

de Assis, Thiago A.; Aarão Reis, Fábio D. A.

2018-05-01

We study dissolution of minerals with initial rough surfaces using kinetic Monte Carlo simulations and a scaling approach. We consider a simple cubic lattice structure, a thermally activated rate of detachment of a molecule (site), and rough surface configurations produced by fractional Brownian motion algorithm. First we revisit the problem of dissolution of initial flat surfaces, in which the dissolution rate rF reaches an approximately constant value at short times and is controlled by detachment of step edge sites. For initial rough surfaces, the dissolution rate r at short times is much larger than rF ; after dissolution of some hundreds of molecular layers, r decreases by some orders of magnitude across several time decades. Meanwhile, the surface evolves through configurations of decreasing energy, beginning with dissolution of isolated sites, then formation of terraces with disordered boundaries, their growth, and final smoothing. A crossover time to a smooth configuration is defined when r = 1.5rF ; the surface retreat at the crossover is approximately 3 times the initial roughness and is temperature-independent, while the crossover time is proportional to the initial roughness and is controlled by step-edge site detachment. The initial dissolution process is described by the so-called rough rates, which are measured for fixed ratios between the surface retreat and the initial roughness. The temperature dependence of the rough rates indicates control by kink site detachment; in general, it suggests that rough rates are controlled by the weakest microscopic bonds during the nucleation and formation of the lowest energy configurations of the crystalline surface. Our results are related to recent laboratory studies which show enhanced dissolution in polished calcite surfaces. In the application to calcite dissolution in alkaline environment, the minimal values of recently measured dissolution rate spectra give rF ∼10-9 mol/(m2 s), and the calculated rate laws of our model give rough rates in the range 10-6 -10-5 mol/(m2 s). This estimate is consistent with the range of calcite dissolution rates obtained in a recent work after treatment of literature data, which suggests the universal control of kink site dissolution in short term laboratory works. The weak effects of lattice size on our results also suggest that smoothing of mineral grain surfaces across geological times may be a microscopic explanation for the difference of chemical weathering rate of silicate minerals in laboratory and in the environment.

High-Isolation Low Cross-Polarization Phased-Array Antenna for MPAR Application

NASA Astrophysics Data System (ADS)

Saeidi-Manesh, Hadi; Karimkashi, Shaya; Zhang, Guifu; Doviak, Richard J.

2017-12-01

The design and analysis of 12 × 12-element planar array of a dual-polarized aperture-coupled microstrip patch antenna operating in the frequency band of 2.7 GHz to 3.0 GHz for multifunction applications are presented. High-isolation between horizontal and vertical polarization ports and low cross-polarization are achieved through an aperture-coupled feed. The reflection coefficient and the isolation of horizontal and vertical ports at different scan angles are examined. The array antenna is fabricated and its radiation patterns are measured in the far-field and near-field chambers. The embedded element pattern of designed element is measured in the near-field chamber and is used for calculating the array scanning radiation pattern.

Large-Eddy Simulations of Fully Developed Turbulent Channel and Pipe Flows with Smooth and Rough Walls

NASA Astrophysics Data System (ADS)

Saito, Namiko

Studies in turbulence often focus on two flow conditions, both of which occur frequently in real-world flows and are sought-after for their value in advancing turbulence theory. These are the high Reynolds number regime and the effect of wall surface roughness. In this dissertation, a Large-Eddy Simulation (LES) recreates both conditions over a wide range of Reynolds numbers Retau = O(102) - O(108) and accounts for roughness by locally modeling the statistical effects of near-wall anisotropic fine scales in a thin layer immediately above the rough surface. A subgrid, roughness-corrected wall model is introduced to dynamically transmit this modeled information from the wall to the outer LES, which uses a stretched-vortex subgrid-scale model operating in the bulk of the flow. Of primary interest is the Reynolds number and roughness dependence of these flows in terms of first and second order statistics. The LES is first applied to a fully turbulent uniformly-smooth/rough channel flow to capture the flow dynamics over smooth, transitionally rough and fully rough regimes. Results include a Moody-like diagram for the wall averaged friction factor, believed to be the first of its kind obtained from LES. Confirmation is found for experimentally observed logarithmic behavior in the normalized stream-wise turbulent intensities. Tight logarithmic collapse, scaled on the wall friction velocity, is found for smooth-wall flows when Re tau ≥ O(106) and in fully rough cases. Since the wall model operates locally and dynamically, the framework is used to investigate non-uniform roughness distribution cases in a channel, where the flow adjustments to sudden surface changes are investigated. Recovery of mean quantities and turbulent statistics after transitions are discussed qualitatively and quantitatively at various roughness and Reynolds number levels. The internal boundary layer, which is defined as the border between the flow affected by the new surface condition and the unaffected part, is computed, and a collapse of the profiles on a length scale containing the logarithm of friction Reynolds number is presented. Finally, we turn to the possibility of expanding the present framework to accommodate more general geometries. As a first step, the whole LES framework is modified for use in the curvilinear geometry of a fully-developed turbulent pipe flow, with implementation carried out in a spectral element solver capable of handling complex wall profiles. The friction factors have shown favorable agreement with the superpipe data, and the LES estimates of the Karman constant and additive constant of the log-law closely match values obtained from experiment.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zare, Bijan; Faramarzi, Mohammad Ali; Sepehrizadeh, Zargham

Highlights: ► Biosynthesis of rod shape tellurium nanoparticles with a hexagonal crystal structure. ► Extraction procedure for isolation of tellurium nanoparticles from Bacillus sp. BZ. ► Extracted tellurium nanoparticles have good bactericidal activity against some bacteria. -- Abstract: In this study, a tellurium-transforming Bacillus sp. BZ was isolated from the Caspian Sea in northern Iran. The isolate was identified by various tests and 16S rDNA analysis, and then used to prepare elemental tellurium nanoparticles. The isolate was subsequently used for the intracellular biosynthesis of elemental tellurium nanoparticles. The biogenic nanoparticles were released by liquid nitrogen and purified by an n-octylmore » alcohol water extraction system. The shape, size, and composition of the extracted nanoparticles were characterized. The transmission electron micrograph showed rod-shaped nanoparticles with dimensions of about 20 nm × 180 nm. The energy dispersive X-ray and X-ray diffraction spectra respectively demonstrated that the extracted nanoparticles consisted of only tellurium and have a hexagonal crystal structure. This is the first study to demonstrate a biological method for synthesizing rod-shaped elemental tellurium by a Bacillus sp., its extraction and its antibacterial activity against different clinical isolates.« less

Laser window with annular grooves for thermal isolation

DOEpatents

Warner, B.E.; Horton, J.A.; Alger, T.W.

1983-07-13

A laser window or other optical element which is thermally loaded, heats up and causes optical distortions because of temperature gradients between the center and the edge. A number of annular grooves, one to three or more, are formed in the element between a central portion and edge portion, producing a web portion which concentrates the thermal gradient and thermally isolates the central portion from the edge portion, producing a uniform temperature profile across the central portion and therefore reduce the optical distortions. The grooves are narrow and closely spaced with respect to the thickness of the element, and successive grooves are formed from alternate sides of the element.

Isolation and functional characterization of CE1 binding proteins.

PubMed

Lee, Sun-ji; Park, Ji Hye; Lee, Mi Hun; Yu, Ji-hyun; Kim, Soo Young

2010-12-16

Abscisic acid (ABA) is a plant hormone that controls seed germination, protective responses to various abiotic stresses and seed maturation. The ABA-dependent processes entail changes in gene expression. Numerous genes are regulated by ABA, and promoter analyses of the genes revealed that cis-elements sharing the ACGTGGC consensus sequence are ubiquitous among ABA-regulated gene promoters. The importance of the core sequence, which is generally known as ABA response element (ABRE), has been demonstrated by various experiments, and its cognate transcription factors known as ABFs/AREBs have been identified. Although necessary, ABRE alone is not sufficient, and another cis-element known as "coupling element (CE)" is required for full range ABA-regulation of gene expression. Several CEs are known. However, despite their importance, the cognate transcription factors mediating ABA response via CEs have not been reported to date. Here, we report the isolation of transcription factors that bind one of the coupling elements, CE1. To isolate CE1 binding proteins, we carried out yeast one-hybrid screens. Reporter genes containing a trimer of the CE1 element were prepared and introduced into a yeast strain. The yeast was transformed with library DNA that represents RNA isolated from ABA-treated Arabidopsis seedlings. From the screen of 3.6 million yeast transformants, we isolated 78 positive clones. Analysis of the clones revealed that a group of AP2/ERF domain proteins binds the CE1 element. We investigated their expression patterns and analyzed their overexpression lines to investigate the in vivo functions of the CE element binding factors (CEBFs). Here, we show that one of the CEBFs, AtERF13, confers ABA hypersensitivity in Arabidopsis, whereas two other CEBFs enhance sugar sensitivity. Our results indicate that a group of AP2/ERF superfamily proteins interacts with CE1. Several CEBFs are known to mediate defense or abiotic stress response, but the physiological functions of other CEBFs remain to be determined. Our in vivo functional analysis of several CEBFs suggests that they are likely to be involved in ABA and/or sugar response. Together with previous results reported by others, our current data raise an interesting possibility that the coupling element CE1 may function not only as an ABRE but also as an element mediating biotic and abiotic stress responses.

Effect of surface treatment on stress distribution in immediately loaded dental implants--a 3D finite element analysis.

PubMed

Bahrami, Babak; Shahrbaf, Shirin; Mirzakouchaki, Behnam; Ghalichi, Farzan; Ashtiani, Mohammed; Martin, Nicolas

2014-04-01

To investigate, by means of FE analysis, the effect of surface roughness treatments on the distribution of stresses at the bone-implant interface in immediately loaded mandibular implants. An accurate, high resolution, digital replica model of bone structure (cortical and trabecular components) supporting an implant was created using CT scan data and image processing software (Mimics 13.1; Materialize, Leuven, Belgium). An anatomically accurate 3D model of a mandibular-implant complex was created using a professional 3D-CAD modeller (SolidWorks, DassaultSystèmes Solid Works Corp; 2011). Finite element models were created with one of the four roughness treatments on the implant fixture surface. Of these, three were surface treated to create a uniform coating determined by the coefficient of friction (μ); these were either (1) plasma sprayed or porous-beaded (μ=1.0), (2) sandblasted (μ=0.68) or (3) polished (μ=0.4). The fourth implant had a novel two-part surface roughness consisting of a coronal polished component (μ=0.4) interfacing with the cortical bone, and a body plasma treated surface component (μ=1) interfacing with the trabecular bone. Finite element stress analysis was carried out under vertical and lateral forces. This investigation showed that the type of surface treatment on the implant fixture affects the stress at the bone-implant interface of an immediately loaded implant complex. Von Mises stress data showed that the two-part surface treatment created the better stress distribution at the implant-bone interface. The results from this FE computational analysis suggest that the proposed two-part surface treatment for IL implants creates lower stresses than single uniform treatments at the bone-implant interface, which might decrease peri-implant bone loss. Future investigations should focus on mechanical and clinical validation of these FE results. Copyright © 2014 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

Airflow Dynamics and Sand Transport over a Coastal Foredune with Large Woody Debris.

NASA Astrophysics Data System (ADS)

Grilliot, M. J.; Walker, I. J.; Bauer, B. O.

2016-12-01

Airflow dynamics and sand transport patterns over beach-foredune systems are complex due to the effects of topographic forcing and varied surface roughness elements. The role of large woody debris (LWD) as a roughness element in foredune dynamics is understudied compared to the effects of plant cover. Unlike plants, non-porous objects like LWD impose bluff body effects and induce secondary flow circulation that varies with LWD size, density, and arrangement. It is hypothesized that modified flow patterns over LWD can influence beach-dune sediment budgets and dune geometry via changes to mean near-surface flow patterns, turbulence, sand transport pathways and sedimentation patterns. In turn, LWD may act as an accretion anchor and store appreciable amounts of aeolian sand that subsequently may provide an enhanced buffer against coastal and/or wind erosion. This study examines turbulent airflow dynamics and related sand transport patterns for oblique onshore flow conditions over a mesotidal beach and scarped dune on Calvert Island, British Columbia, Canada. Abundant exposed LWD fronting the foredune enhances turbulent Reynolds stress (RS) and turbulence intensity (TI) near the surface. During low, yet competent wind speeds (6.54 m s-1), RS and TI are not competent enough in the sheltered flow regions within the LWD matrix and sediment deposition occurs. However, small zones of localized acceleration were observed with sand transport. Higher wind speeds, well above the entrainment threshold, increase RS and TI over LWD relative to the beach, facilitating sediment transport through and over the LWD matrix, with localized pockets of deposition in sheltered areas. The majority of LWD deposits on beaches in the region are anthropogenic logging debris and are known to be decreasing since the 1950s, but likely earlier. Thus, it is important to understand how non-porous roughness elements, like LWD, affect beach-dune sediment budgets and evolution, particularly in light of increasing storminess and sea level rise.

Eight-Element Antenna Array for LTE 3.4-3.8 GHz Mobile Handset Applications

NASA Astrophysics Data System (ADS)

Yang, Lingsheng; Ji, Ming; Cheng, Biyu; Ni, Bo

2017-05-01

In this letter, an eight-element Multiple-input multiple-output (MIMO) antenna system for LTE mobile handset applications is proposed. The antenna array consists of eight 3D inverted F-shaped antennas (3D-IFA), and the measured -10 dB impedance bandwidth is 3.2-3.9 GHz which can cover the LTE bands 42 and 43 (3.4-3.8 GHz). By controlling the rotation of the antenna elements, no less than 10 dB isolation between antenna elements can be obtained. After using the specially designed meandered slots on the ground as decoupling structures, the measured isolation can be further improved to higher than 13 dB between the antenna elements at the whole operating band.

Sastrugi Geometrical Properties and Morphometry Over Two Winter Seasons at col du Lac Blanc (french Alps, 2700 m a.s.l)

NASA Astrophysics Data System (ADS)

Naaim, Florence; Picard, Ghislain; Bellot, Hervé; Arnaud, Laurent; Vionnet, Vincent

2017-04-01

Some elements of snow surface roughness, such as ripple or sastrugi, are a direct manifestation of wind erosion and in turn modify the near-surface wind field and consequently the horizontal snow mass fluxes. This leads to a negative feedback between wind strength and surface roughness that must be taken into account in numerical models. Formation of sastrugi, which are elongated metric-scale ridges of wind-packed snow whose longitudinal axis is parallel to the prevailing wind at the time of their formation, is still not well-understood. The first step to provide new information about the formation and evolution of such features is to integrate meteorological data and accurate description of geometrical properties. But the complex and dynamic surface of sastrugi cannot be easily captured by manual measurements (Bellot et al., 2014), which furthermore must be frequent as the formation of new landforms can happen very quickly. That's why the potential of a low-cost time-lapse terrestrial laserscan RLS (Picard et al., 2016) has been investigated during the winter seasons 2015-2016 and 2016-2017 at Col du Lac Blanc in the French Alps. This experimental test site, dedicated to drifting snow studies, and subject to the formation of sastrugi is well-suited for such study : accurate meteorological data, including drifting snow fluxes, are available each 10 minutes. RLS covered a surface area of around 200 m2 for a spatial horizontal resolution of nearly 2 cm and monitored successfully surface roughness once a day during the whole winter seasons. Sastrugi geometrical parameters, such as the frontal area and average height of roughness elements has been extracted from the RLS data and the sastrugi morphometry has be examined over two winter seasons in link with snow fall, drifting snow occurence and intensity and wind speed.

Study of 3-D Dynamic Roughness Effects on Flow Over a NACA 0012 Airfoil Using Large Eddy Simulations at Low Reynolds Numbers

NASA Astrophysics Data System (ADS)

Guda, Venkata Subba Sai Satish

There have been several advancements in the aerospace industry in areas of design such as aerodynamics, designs, controls and propulsion; all aimed at one common goal i.e. increasing efficiency --range and scope of operation with lesser fuel consumption. Several methods of flow control have been tried. Some were successful, some failed and many were termed as impractical. The low Reynolds number regime of 104 - 105 is a very interesting range. Flow physics in this range are quite different than those of higher Reynolds number range. Mid and high altitude UAV's, MAV's, sailplanes, jet engine fan blades, inboard helicopter rotor blades and wind turbine rotors are some of the aerodynamic applications that fall in this range. The current study deals with using dynamic roughness as a means of flow control over a NACA 0012 airfoil at low Reynolds numbers. Dynamic 3-D surface roughness elements on an airfoil placed near the leading edge aim at increasing the efficiency by suppressing the effects of leading edge separation like leading edge stall by delaying or totally eliminating flow separation. A numerical study of the above method has been carried out by means of a Large Eddy Simulation, a mathematical model for turbulence in Computational Fluid Dynamics, owing to the highly unsteady nature of the flow. A user defined function has been developed for the 3-D dynamic roughness element motion. Results from simulations have been compared to those from experimental PIV data. Large eddy simulations have relatively well captured the leading edge stall. For the clean cases, i.e. with the DR not actuated, the LES was able to reproduce experimental results in a reasonable fashion. However DR simulation results show that it fails to reattach the flow and suppress flow separation compared to experiments. Several novel techniques of grid design and hump creation are introduced through this study.

Ultrasonic isolation of the outer membrane of Escherichia coli with autodisplayed Z-domains.

PubMed

Bong, Ji-Hong; Yoo, Gu; Park, Min; Kang, Min-Jung; Jose, Joachim; Pyun, Jae-Chul

2014-11-01

The outer membrane of Escherichia coli was previously isolated as a liposome-like outer membrane particle using an enzymatic treatment for lysozymes; for immunoassays, the particles were subsequently layered on solid supports via hydrophobic interactions. This work presents an enzyme-free isolation method for the E. coli outer membrane with autodisplayed Z-domains using ultrasonication. First, the properties of the outer membrane particle, such as the particle size, zeta potential, and total protein, were compared with the properties of particles obtained using the previous preparation methods. Compared with the conventional isolation method using an enzyme treatment, the ultrasonic method exhibited a higher efficiency at isolating the outer membrane and less contamination by cytosolic proteins. The isolated outer membrane particles were layered on a gold surface, and the roughness and thickness of the layered outer membrane layers were subsequently analyzed using AFM analysis. Finally, the antibody-binding activity of two outer membrane layers with autodisplayed Z-domains created from particles that were isolated using the enzymatic and ultrasonic isolation methods was measured using fluorescein-labeled antibody as a model analyte, and the activity of the outer membrane layer that was isolated from the ultrasonic method was estimated to be more than 20% higher than that from the conventional enzymatic method. Copyright © 2014 Elsevier Inc. All rights reserved.

Simple scattering analysis and simulation of optical components created by additive manufacturing

NASA Astrophysics Data System (ADS)

Rank, M.; Horsak, A.; Heinrich, A.

2017-10-01

Additive manufacturing of optical elements is known but still new to the field of optical fabrication. In 3D printers, the parts are deposited layer-by-layer approximating the shape defined in optics design enabling new shapes, which cannot be manufactured using conventional methods. However, the layered structure also causes surface roughness and subsurface scattering, which decrease the quality of optical elements. Illuminating a flat sample with a laser beam, different light distributions are generated on a screen depending on the printing orientation of the sample. Whereas the laser beam is mainly diffused by the samples, a line shaped light distribution can be achieved for a special case in which the laser light goes parallel to the layer structure. These optical effects of 3D printed parts are analyzed using a goniometric setup and fed back into the optics simulation with the goal to improve the design considering the characteristics of the real sample. For a detailed look on the effect, the total scattering is split up into surface contributions and subsurface scattering using index matching techniques to isolate the effects from each other. For an index matched sample with negligible surface effects the line shaped distribution turns into a diffraction pattern which corresponds to the layer thickness of the printer. Finally, an optic simulation with the scattering data is set up for a simple curved sample. The light distribution measured with a robot-based goniophotometer differs from the simulation, because the curvature is approximated by the layer structure. This makes additional analysis necessary.

Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits

PubMed Central

Goudenège, David; Labreuche, Yannick; Krin, Evelyne; Ansquer, Dominique; Mangenot, Sophie; Calteau, Alexandra; Médigue, Claudine; Mazel, Didier; Polz, Martin F; Le Roux, Frédérique

2013-01-01

Vibrio nigripulchritudo is an emerging pathogen of farmed shrimp in New Caledonia and other regions in the Indo-Pacific. The molecular determinants of V. nigripulchritudo pathogenicity are unknown; however, molecular epidemiological studies have suggested that pathogenicity is linked to particular lineages. Here, we performed high-throughput sequencing-based comparative genome analysis of 16 V. nigripulchritudo strains to explore the genomic diversity and evolutionary history of pathogen-containing lineages and to identify pathogen-specific genetic elements. Our phylogenetic analysis revealed three pathogen-containing V. nigripulchritudo clades, including two clades previously identified from New Caledonia and one novel clade comprising putatively pathogenic isolates from septicemic shrimp in Madagascar. The similar genetic distance between the three clades indicates that they have diverged from an ancestral population roughly at the same time and recombination analysis indicates that these genomes have, in the past, shared a common gene pool and exchanged genes. As each contemporary lineage is comprised of nearly identical strains, comparative genomics allowed differentiation of genetic elements specific to shrimp pathogenesis of varying severity. Notably, only a large plasmid present in all highly pathogenic (HP) strains encodes a toxin. Although less/non-pathogenic strains contain related plasmids, these are differentiated by a putative toxin locus. Expression of this gene by a non-pathogenic V. nigripulchritudo strain resulted in production of toxic culture supernatant, normally an exclusive feature of HP strains. Thus, this protein, here termed ‘nigritoxin', is implicated to an extent that remains to be precisely determined in the toxicity of V. nigripulchritudo. PMID:23739050

As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile.

PubMed

Hargreaves, Katherine R; Otieno, James R; Thanki, Anisha; Blades, Matthew J; Millard, Andrew D; Browne, Hilary P; Lawley, Trevor D; Clokie, Martha R J

2015-05-27

The bacterium Clostridium difficile is a significant cause of nosocomial infections worldwide. The pathogenic success of this organism can be attributed to its flexible genome which is characterized by the exchange of mobile genetic elements, and by ongoing genome evolution. Despite its pathogenic status, C. difficile can also be carried asymptomatically, and has been isolated from natural environments such as water and sediments where multiple strain types (ribotypes) are found in close proximity. These include ribotypes which are associated with disease, as well as those that are less commonly isolated from patients. Little is known about the genomic content of strains in such reservoirs in the natural environment. In this study, draft genomes have been generated for 13 C. difficile isolates from estuarine sediments including clinically relevant and environmental associated types. To identify the genetic diversity within this strain collection, whole-genome comparisons were performed using the assemblies. The strains are highly genetically diverse with regards to the C. difficile "mobilome," which includes transposons and prophage elements. We identified a novel transposon-like element in two R078 isolates. Multiple, related and unrelated, prophages were detected in isolates across ribotype groups, including two novel prophage elements and those related to the transducing phage φC2. The susceptibility of these isolates to lytic phage infection was tested using a panel of characterized phages found from the same locality. In conclusion, estuarine sediments are a source of genetically diverse C. difficile strains with a complex network of prophages, which could contribute to the emergence of new strains in clinics. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile

PubMed Central

Hargreaves, Katherine R.; Otieno, James R.; Thanki, Anisha; Blades, Matthew J.; Millard, Andrew D.; Browne, Hilary P.; Lawley, Trevor D.; Clokie, Martha R.J.

2015-01-01

The bacterium Clostridium difficile is a significant cause of nosocomial infections worldwide. The pathogenic success of this organism can be attributed to its flexible genome which is characterized by the exchange of mobile genetic elements, and by ongoing genome evolution. Despite its pathogenic status, C. difficile can also be carried asymptomatically, and has been isolated from natural environments such as water and sediments where multiple strain types (ribotypes) are found in close proximity. These include ribotypes which are associated with disease, as well as those that are less commonly isolated from patients. Little is known about the genomic content of strains in such reservoirs in the natural environment. In this study, draft genomes have been generated for 13 C. difficile isolates from estuarine sediments including clinically relevant and environmental associated types. To identify the genetic diversity within this strain collection, whole-genome comparisons were performed using the assemblies. The strains are highly genetically diverse with regards to the C. difficile “mobilome,” which includes transposons and prophage elements. We identified a novel transposon-like element in two R078 isolates. Multiple, related and unrelated, prophages were detected in isolates across ribotype groups, including two novel prophage elements and those related to the transducing phage φC2. The susceptibility of these isolates to lytic phage infection was tested using a panel of characterized phages found from the same locality. In conclusion, estuarine sediments are a source of genetically diverse C. difficile strains with a complex network of prophages, which could contribute to the emergence of new strains in clinics. PMID:26019165

Enhanced production of recombinant proteins with Corynebacterium glutamicum by deletion of insertion sequences (IS elements).

PubMed

Choi, Jae Woong; Yim, Sung Sun; Kim, Min Jeong; Jeong, Ki Jun

2015-12-29

In most bacteria, various jumping genetic elements including insertion sequences elements (IS elements) cause a variety of genetic rearrangements resulting in harmful effects such as genome and recombinant plasmid instability. The genetic stability of a plasmid in a host is critical for high-level production of recombinant proteins, and in this regard, the development of an IS element-free strain could be a useful strategy for the enhanced production of recombinant proteins. Corynebacterium glutamicum, which is a workhorse in the industrial-scale production of various biomolecules including recombinant proteins, also has several IS elements, and it is necessary to identify the critical IS elements and to develop IS element deleted strain. From the cultivation of C. glutamicum harboring a plasmid for green fluorescent protein (GFP) gene expression, non-fluorescent clones were isolated by FACS (fluorescent activated cell sorting). All the isolated clones had insertions of IS elements in the GFP coding region, and two major IS elements (ISCg1 and ISCg2 families) were identified. By co-cultivating cells harboring either the isolated IS element-inserted plasmid or intact plasmid, it was clearly confirmed that cells harboring the IS element-inserted plasmids became dominant during the cultivation due to their growth advantage over cells containing intact plasmids, which can cause a significant reduction in recombinant protein production during cultivation. To minimize the harmful effects of IS elements on the expression of heterologous genes in C. glutamicum, two IS element free C. glutamicum strains were developed in which each major IS element was deleted, and enhanced productivity in the engineered C. glutamicum strain was successfully demonstrated with three models: GFP, poly(3-hydroxybutyrate) [P(3HB)] and γ-aminobutyrate (GABA). Our findings clearly indicate that the hopping of IS elements could be detrimental to the production of recombinant proteins in C. glutamicum, emphasizing the importance of developing IS element free host strains.

Complete genome analysis of three Acinetobacter baumannii clinical isolates in China for insight into the diversification of drug resistance elements.

PubMed

Zhu, Lingxiang; Yan, Zhongqiang; Zhang, Zhaojun; Zhou, Qiming; Zhou, Jinchun; Wakeland, Edward K; Fang, Xiangdong; Xuan, Zhenyu; Shen, Dingxia; Li, Quan-Zhen

2013-01-01

The emergence and rapid spreading of multidrug-resistant Acinetobacter baumannii strains has become a major health threat worldwide. To better understand the genetic recombination related with the acquisition of drug-resistant elements during bacterial infection, we performed complete genome analysis on three newly isolated multidrug-resistant A. baumannii strains from Beijing using next-generation sequencing technology. Whole genome comparison revealed that all 3 strains share some common drug resistant elements including carbapenem-resistant bla OXA-23 and tetracycline (tet) resistance islands, but the genome structures are diversified among strains. Various genomic islands intersperse on the genome with transposons and insertions, reflecting the recombination flexibility during the acquisition of the resistant elements. The blood-isolated BJAB07104 and ascites-isolated BJAB0868 exhibit high similarity on their genome structure with most of the global clone II strains, suggesting these two strains belong to the dominant outbreak strains prevalent worldwide. A large resistance island (RI) of about 121-kb, carrying a cluster of resistance-related genes, was inserted into the ATPase gene on BJAB07104 and BJAB0868 genomes. A 78-kb insertion element carrying tra-locus and bla OXA-23 island, can be either inserted into one of the tniB gene in the 121-kb RI on the chromosome, or transformed to conjugative plasmid in the two BJAB strains. The third strains of this study, BJAB0715, which was isolated from spinal fluid, exhibit much more divergence compared with above two strains. It harbors multiple drug-resistance elements including a truncated AbaR-22-like RI on its genome. One of the unique features of this strain is that it carries both bla OXA-23 and bla OXA-58 genes on its genome. Besides, an Acinetobacter lwoffii adeABC efflux element was found inserted into the ATPase position in BJAB0715. Our comparative analysis on currently completed Acinetobacter baumannii genomes revealed extensive and dynamic genome organizations, which may facilitate the bacteria to acquire drug-resistance elements into their genomes.

A higher-than-predicted measurement of iron opacity at solar interior temperatures.

PubMed

Bailey, J E; Nagayama, T; Loisel, G P; Rochau, G A; Blancard, C; Colgan, J; Cosse, Ph; Faussurier, G; Fontes, C J; Gilleron, F; Golovkin, I; Hansen, S B; Iglesias, C A; Kilcrease, D P; MacFarlane, J J; Mancini, R C; Nahar, S N; Orban, C; Pain, J-C; Pradhan, A K; Sherrill, M; Wilson, B G

2015-01-01

Nearly a century ago it was recognized that radiation absorption by stellar matter controls the internal temperature profiles within stars. Laboratory opacity measurements, however, have never been performed at stellar interior conditions, introducing uncertainties in stellar models. A particular problem arose when refined photosphere spectral analysis led to reductions of 30-50 per cent in the inferred amounts of carbon, nitrogen and oxygen in the Sun. Standard solar models using the revised element abundances disagree with helioseismic observations that determine the internal solar structure using acoustic oscillations. This could be resolved if the true mean opacity for the solar interior matter were roughly 15 per cent higher than predicted, because increased opacity compensates for the decreased element abundances. Iron accounts for a quarter of the total opacity at the solar radiation/convection zone boundary. Here we report measurements of wavelength-resolved iron opacity at electron temperatures of 1.9-2.3 million kelvin and electron densities of (0.7-4.0) × 10(22) per cubic centimetre, conditions very similar to those in the solar region that affects the discrepancy the most: the radiation/convection zone boundary. The measured wavelength-dependent opacity is 30-400 per cent higher than predicted. This represents roughly half the change in the mean opacity needed to resolve the solar discrepancy, even though iron is only one of many elements that contribute to opacity.

Ice Shape Characterization Using Self-Organizing Maps

NASA Technical Reports Server (NTRS)

McClain, Stephen T.; Tino, Peter; Kreeger, Richard E.

2011-01-01

A method for characterizing ice shapes using a self-organizing map (SOM) technique is presented. Self-organizing maps are neural-network techniques for representing noisy, multi-dimensional data aligned along a lower-dimensional and possibly nonlinear manifold. For a large set of noisy data, each element of a finite set of codebook vectors is iteratively moved in the direction of the data closest to the winner codebook vector. Through successive iterations, the codebook vectors begin to align with the trends of the higher-dimensional data. In information processing, the intent of SOM methods is to transmit the codebook vectors, which contains far fewer elements and requires much less memory or bandwidth, than the original noisy data set. When applied to airfoil ice accretion shapes, the properties of the codebook vectors and the statistical nature of the SOM methods allows for a quantitative comparison of experimentally measured mean or average ice shapes to ice shapes predicted using computer codes such as LEWICE. The nature of the codebook vectors also enables grid generation and surface roughness descriptions for use with the discrete-element roughness approach. In the present study, SOM characterizations are applied to a rime ice shape, a glaze ice shape at an angle of attack, a bi-modal glaze ice shape, and a multi-horn glaze ice shape. Improvements and future explorations will be discussed.

Vacuum aperture isolator for retroreflection from laser-irradiated target

DOEpatents

Benjamin, Robert F.; Mitchell, Kenneth B.

1980-01-01

The disclosure is directed to a vacuum aperture isolator for retroreflection of a laser-irradiated target. Within a vacuum chamber are disposed a beam focusing element, a disc having an aperture and a recollimating element. The edge of the focused beam impinges on the edge of the aperture to produce a plasma which refracts any retroreflected light from the laser's target.

Emergence of scarlet fever Streptococcus pyogenes emm12 clones in Hong Kong is associated with toxin acquisition and multidrug resistance.

PubMed

Davies, Mark R; Holden, Matthew T; Coupland, Paul; Chen, Jonathan H K; Venturini, Carola; Barnett, Timothy C; Zakour, Nouri L Ben; Tse, Herman; Dougan, Gordon; Yuen, Kwok-Yung; Walker, Mark J

2015-01-01

A scarlet fever outbreak began in mainland China and Hong Kong in 2011 (refs. 1-6). Macrolide- and tetracycline-resistant Streptococcus pyogenes emm12 isolates represent the majority of clinical cases. Recently, we identified two mobile genetic elements that were closely associated with emm12 outbreak isolates: the integrative and conjugative element ICE-emm12, encoding genes for tetracycline and macrolide resistance, and prophage ΦHKU.vir, encoding the superantigens SSA and SpeC, as well as the DNase Spd1 (ref. 4). Here we sequenced the genomes of 141 emm12 isolates, including 132 isolated in Hong Kong between 2005 and 2011. We found that the introduction of several ICE-emm12 variants, ΦHKU.vir and a new prophage, ΦHKU.ssa, occurred in three distinct emm12 lineages late in the twentieth century. Acquisition of ssa and transposable elements encoding multidrug resistance genes triggered the expansion of scarlet fever-associated emm12 lineages in Hong Kong. The occurrence of multidrug-resistant ssa-harboring scarlet fever strains should prompt heightened surveillance within China and abroad for the dissemination of these mobile genetic elements.

Surface roughness of Saturn's rings and ring particles inferred from thermal phase curves

NASA Astrophysics Data System (ADS)

Morishima, Ryuji; Turner, Neal; Spilker, Linda

2017-10-01

We analyze thermal phase curves of all the main rings of Saturn (the A, B, C rings, and the Cassini division) measured by both the far-IR and mid-IR detectors of the Cassini Composite InfraRed Spectrometer (CIRS). All the rings show temperature increases toward zero phase angle, known as an opposition effect or thermal beaming. For the C ring and Cassini division, which have low optical depths, intra-particle shadowing is considered the dominant mechanism causing the effect. On the other hand, the phase curves of the optically thick B and A rings steepen significantly with decreasing absolute solar elevation angle from 21° to 14°, suggesting inter-particle shadowing plays an important role in these rings. We employ an analytic roughness model to estimate the degrees of surface roughness of the rings or ring particles. For optically thin rings, an isolated particle covered by spherical segment craters is employed while for the thick rings we approximate a packed particle layer as a slab covered by craters. The particles in the thin rings are found to have generally rough surfaces, except in the middle C ring. Across the C ring, the optical depth correlates with the degree of surface roughness. This may indicate that surface roughness comes mainly from particle clumping, while individual particles have rather smooth surfaces. For the optically thick rings, the surface roughness of the particle layer is found to be moderate. The modeled phase curves of optically thick rings are shallow if the phase angle change is primarily due to change of observer azimuthal angle. On the other hand, the phase curves are steep if the phase angle change is due to change of observer elevation angle, as inter-particle shadows become visible at higher observer elevation. In addition, the area of shadowed facets increases with decreasing solar elevation angle. These combined effects explain the large seasonal change of the phase curve steepness observed for the thick rings. The degrees of surface roughness inferred from the thermal phase curves are generally less than those from the phase curves in visible light. This is probably explained by different roughness scales seen in thermal and visible light or by dilution of thermal phase curve steepnesses due to particle motion.

Mechanisms of wave‐driven water level variability on reef‐fringed coastlines

USGS Publications Warehouse

Buckley, Mark L.; Lowe, Ryan J.; Hansen, Jeff E; van Dongeren, Ap R.; Storlazzi, Curt

2018-01-01

Wave‐driven water level variability (and runup at the shoreline) is a significant cause of coastal flooding induced by storms. Wave runup is challenging to predict, particularly along tropical coral reef‐fringed coastlines due to the steep bathymetric profiles and large bottom roughness generated by reef organisms, which can violate assumptions in conventional models applied to open sandy coastlines. To investigate the mechanisms of wave‐driven water level variability on a reef‐fringed coastline, we performed a set of laboratory flume experiments on an along‐shore uniform bathymetric profile with and without bottom roughness. Wave setup and waves at frequencies lower than the incident sea‐swell forcing (infragravity waves) were found to be the dominant components of runup. These infragravity waves were positively correlated with offshore wave groups, signifying they were generated in the surf zone by the oscillation of the breakpoint. On the reef flat and at the shoreline, the low‐frequency waves formed a standing wave pattern with energy concentrated at the natural frequencies of the reef flat, indicating resonant amplification. Roughness elements used in the flume to mimic large reef bottom roughness reduced low frequency motions on the reef flat and reduced wave run up by 30% on average, compared to the runs over a smooth bed. These results provide insight into sea‐swell and infragravity wave transformation and wave setup dynamics on steep‐sloped coastlines, and the effect that future losses of reef bottom roughness may have on coastal flooding along reef‐fringed coasts.

Effects of Roughing on Finish Rolling Simulations in Microalloyed Strip Steels

NASA Astrophysics Data System (ADS)

Chalimba, S. A. J.; Mostert, R. J.; Stumpf, W. E.; Siyasiya, C. W.; Banks, K. M.

2017-11-01

The effects of a roughing pass in hot rolling simulations were assessed in VN and Nb-Ti steels. Continuous cooling phase transformation temperatures, flow curves, softening mechanisms (dynamic transformation DT and dynamic recrystallization DRX), and deformed microstructure morphologies were analyzed. The application of one or more roughing passes eliminates the effects of prior microstructural history and ensures that all stock material experiences equivalent hot working conditions and state of the microalloying elements. It has been shown that roughing in hot simulation has the following positive influences: (1) provide more reliable flow stress data; (2) give greater consistencies and accuracy in analysis of softening mechanisms giving three distinct regimes (DT regime at temperatures below 800 °C, DT/DRX inter-mode regime between 800 and 950 °C and DRX regime for temperatures above 950 °C for VN steel); (3) promotion of softening mechanisms as evidence by low critical strains (ɛ_{{{c} {DT}}} was within the range 0.08-0.12, while for finishing-only pass, the ɛ_{{{c} {DT}}} was in the range of 0.11-0.14 at \\dot{ɛ } = 0.1 s-1); (4) for roughing and finishing schedules, DT was verified to occur at temperatures 117 and 133 °C above Ae3 for VN steel and Nb-Ti steel, respectively, compared to the F-only schedules which showed that DT can only occur at temperatures below the Ae3; (5) RF schedules promoted uniform microstructural morphologies compared to inhomogeneous microstructures realized in F-only schedules.

Surface Coating of Gypsum-Based Molds for Maxillofacial Prosthetic Silicone Elastomeric Material: The Surface Topography.

PubMed

Khalaf, Salah; Ariffin, Zaihan; Husein, Adam; Reza, Fazal

2015-07-01

This study aimed to compare the surface roughness of maxillofacial silicone elastomers fabricated in noncoated and coated gypsum materials. This study was also conducted to characterize the silicone elastomer specimens after surfaces were modified. A gypsum mold was coated with clear acrylic spray. The coated mold was then used to produce modified silicone experimental specimens (n = 35). The surface roughness of the modified silicone elastomers was compared with that of the control specimens, which were prepared by conventional flasking methods (n = 35). An atomic force microscope (AFM) was used for surface roughness measurement of silicone elastomer (unmodified and modified), and a scanning electron microscope (SEM) was used to evaluate the topographic conditions of coated and noncoated gypsum and silicone elastomer specimens (unmodified and modified) groups. After the gypsum molds were characterized, the fabricated silicone elastomers molded on noncoated and coated gypsum materials were evaluated further. Energy-dispersive X-ray spectroscopy (EDX) analysis of gypsum materials (noncoated and coated) and silicone elastomer specimens (unmodified and modified) was performed to evaluate the elemental changes after coating was conducted. Independent t test was used to analyze the differences in the surface roughness of unmodified and modified silicone at a significance level of p < 0.05. Roughness was significantly reduced in the silicone elastomers processed against coated gypsum materials (p < 0.001). The AFM and SEM analysis results showed evident differences in surface smoothness. EDX data further revealed the presence of the desired chemical components on the surface layer of unmodified and modified silicone elastomers. Silicone elastomers with lower surface roughness of maxillofacial prostheses can be obtained simply by coating a gypsum mold. © 2014 by the American College of Prosthodontists.

A Synthesis and Comparison of Approaches for Quantifying Coral Reef Structure

NASA Astrophysics Data System (ADS)

Duvall, M. S.; Hench, J. L.

2016-02-01

The complex physical structures of coral reefs provide substrate for benthic organisms, surface area for material fluxes, and have been used as a predictor of reef-fish biomass and biodiversity. Coral reef topography has a first order effect on reef hydrodynamics by imposing drag forces and increasing momentum and scalar dispersion. Despite its importance, quantifying reef topography remains a challenge, as it is patchy and discontinuous while also varying over orders of magnitude in spatial scale. Previous studies have quantified reef structure using a range of 1D and 2D metrics that estimate vertical roughness, which is the departure from a flat geometric profile or surface. However, there is no general mathematical or conceptual framework by which to apply or compare these roughness metrics. While the specific calculations of different metrics vary, we propose that they can be classified into four categories based on: 1) vertical relief relative to a reference height; 2) gradients in vertical relief; 3) surface contour distance; or 4) variations in roughness with scale. We apply metrics from these four classes to idealized reef topography as well as natural reef topography data from Moorea, French Polynesia. Through the use of idealized profiles, we demonstrate the potential for reefs with different morphologies to possess the same value for some scale-dependent metrics (i.e. classes 1-3). Due to the superposition of variable-scale roughness elements in reef topography, we find that multi-scale metrics (i.e. class 4) can better characterize structural complexity by capturing surface roughness across a range of spatial scales. In particular, we provide evidence of the ability of 1D continuous wavelet transforms to detect changes in dominant roughness scales on idealized topography as well as within real reef systems.

Charging system with galvanic isolation and multiple operating modes

DOEpatents

Kajouke, Lateef A.; Perisic, Milun; Ransom, Ray M.

2013-01-08

Systems and methods are provided for operating a charging system with galvanic isolation adapted for multiple operating modes. A vehicle charging system comprises a DC interface, an AC interface, a first conversion module coupled to the DC interface, and a second conversion module coupled to the AC interface. An isolation module is coupled between the first conversion module and the second conversion module. The isolation module comprises a transformer and a switching element coupled between the transformer and the second conversion module. The transformer and the switching element are cooperatively configured for a plurality of operating modes, wherein each operating mode of the plurality of operating modes corresponds to a respective turns ratio of the transformer.

Trends in Trace Element Fractionation Between Foraminiferal Species and the Role of Biomineralization

NASA Astrophysics Data System (ADS)

Reichart, G. J.; Nooijer, L. D.; Geerken, E.; Mezger, E.; van Dijk, I. V.; Daemmer, L. K.

2017-12-01

Reconstructions of past climate and environments are largely based on stable isotopes and trace element concentrations measured on fossil foraminiferal calcite. Their element and isotope composition roughly reflects seawater composition and physical conditions, which in turn, are related to paleoceanographic parameters. More recently, attempts are being made to infer ranges in environmental parameters using the observed differences in the composition within individual tests. Remarkably, inter-species differences in trace element incorporation are well-correlated over a wide range of environmental conditions. This is particularly remarkable knowing that different environmental factors influence incorporation of these elements at various magnitudes. Most likely the complex biomineralization of foraminifera potentially offsets trace elements similarly at all these scales and also between different species. This suggests that at least parts of the mechanisms underlying foraminiferal biomineralization are similar for all species, which in turn provides important clues on the cellular mechanisms operating during calcification. Moreover, the systematics in trace element partitioning between species could potentially provide important clues for unravelling past changes in trace element composition of the ancient ocean.

Microbial Transformations of Selenium

PubMed Central

Doran, J. W.; Alexander, M.

1977-01-01

Resting cell suspensions of a strain of Corynebacterium isolated from soil formed dimethyl selenide from selenate, selenite, elemental selenium, selenomethionine, selenocystine, and methaneseleninate. Extracts of the bacterium catalyzed the production of dimethyl selenide from selenite, elemental selenium, and methaneseleninate, and methylation of the inorganic Se compounds was enhanced by S-adenosylmethionine. Neither trimethylselenonium nor methaneselenonate was metabolized by the Corynebacterium. Resting cell suspensions of a methionine-utilizing pseudomonad converted selenomethionine to dimethyl diselenide. Six of 10 microorganisms able to grow on cystine used selenocystine as a sole source of carbon and formed elemental selenium, and one of the isolates, a pseudomonad, was found also to produce selenide. Soil enrichments converted trimethylselenonium to dimethyl selenide. Bacteria capable of utilizing trimethylselenonium, dimethyl selenide, and dimethyl diselenide as carbon sources were isolated from soil. PMID:16345188

Andreas Acrivos Dissertation Award Talk: Modeling drag forces and velocity fluctuations in wall-bounded flows at high Reynolds numbers

NASA Astrophysics Data System (ADS)

Yang, Xiang

2017-11-01

The sizes of fluid motions in wall-bounded flows scale approximately as their distances from the wall. At high Reynolds numbers, resolving near-wall, small-scale, yet momentum-transferring eddies are computationally intensive, and to alleviate the strict near-wall grid resolution requirement, a wall model is usually used. The wall model of interest here is the integral wall model. This model parameterizes the near-wall sub-grid velocity profile as being comprised of a linear inner-layer and a logarithmic meso-layer with one additional term that accounts for the effects of flow acceleration, pressure gradients etc. We use the integral wall model for wall-modeled large-eddy simulations (WMLES) of turbulent boundary layers over rough walls. The effects of rough-wall topology on drag forces are investigated. A rough-wall model is then developed based on considerations of such effects, which are now known as mutual sheltering among roughness elements. Last, we discuss briefly a new interpretation of the Townsend attached eddy hypothesis-the hierarchical random additive process model (HRAP). The analogy between the energy cascade and the momentum cascade is mathematically formal as HRAP follows the multi-fractal formulism, which was extensively used for the energy cascade.

Electro and Magneto-Electropolished Surface Micro-Patterning on Binary and Ternary Nitinol

PubMed Central

Munroe, Norman; McGoron, Anthony

2012-01-01

In this study, an Atomic Force Microscopy (AFM) roughness analysis was performed on non-commercial Nitinol alloys with Electropolished (EP) and Magneto-Electropolished (MEP) surface treatments and commercially available stents by measuring Root-Mean-Square (RMS), Average Roughness (Ra), and Surface Area (SA) values at various dimensional areas on the alloy surfaces, ranging from (800 × 800 nm) to (115 × 115μm), and (800 × 800 nm) to (40 × 40 μm) on the commercial stents. Results showed that NiTi-Ta 10 wt% with an EP surface treatment yielded the highest overall roughness, while the NiTi-Cu 10 wt% alloy had the lowest roughness when analyzed over (115 × 115 μm). Scanning Electron Microscopy (SEM) and Energy Dispersive Spectroscopy (EDS) analysis revealed unique surface morphologies for surface treated alloys, as well as an aggregation of ternary elements Cr and Cu at grain boundaries in MEP and EP surface treated alloys, and non-surface treated alloys. Such surface micro-patterning on ternary Nitinol alloys could increase cellular adhesion and accelerate surface endothelialization of endovascular stents, thus reducing the likelihood of in-stent restenosis and provide insight into hemodynamic flow regimes and the corrosion behavior of an implantable device influenced from such surface micro-patterns. PMID:22754200

Synthesis and characterization of MoS2/Ti composite coatings on Ti6Al4V prepared by laser cladding

NASA Astrophysics Data System (ADS)

Yang, Rongjuan; Liu, Zongde; Wang, Yongtian; Yang, Guang; Li, Hongchuan

2013-02-01

The MoS2/Ti composite coating with sub-micron grade structure has been prepared on Ti6Al4V by laser method under argon protection. The morphology, microstructure, microhardness and friction coefficient of the coating were examined. The results indicated that the molybdenum disulfide was decomposed during melting and resolidification. The phase organization of composite coating mainly consisted of ternary element sulfides, molybdenum sulfides and titanium sulfides. The friction coefficient of and the surface roughness the MoS2/Ti coating were lower than those of Ti6Al4V. The composite coating exhibits excellent adhesion to the substrates, less surface roughness, good wear resistance and harder surface.

Soil roughness, slope and surface storage relationship for impervious areas

NASA Astrophysics Data System (ADS)

Borselli, Lorenzo; Torri, Dino

2010-11-01

SummaryThe study of the relationships between surface roughness, local slope gradient and maximum volume of water storage in surface depressions is a fundamental element in the development of hydrological models to be used in soil and water conservation strategies. Good estimates of the maximum volume of water storage are important for runoff assessment during rainfall events. Some attempts to link surface storage to parameters such as indices of surface roughness and, more rarely, local gradient have been proposed by several authors with empirical equations often conflicting between them and usually based on a narrow range of slope gradients. This suggests care in selecting any of the proposed equations or models and invites one to verify the existence of more realistic experimental relationships, based on physical models of the surfaces and valid for a larger range of gradients. The aim of this study is to develop such a relation for predicting/estimating the maximum volume of water that a soil surface, with given roughness characteristics and local slope gradient, can store. Experimental work has been carried out in order to reproduce reliable rough surfaces able to maintain the following properties during the experimental activity: (a) impervious surface to avoid biased storage determination; (b) stable, un-erodible surfaces to avoid changes of retention volume during tests; (c) absence of hydrophobic behaviour. To meet the conditions a-c we generate physical surfaces with various roughness magnitude using plasticine (emulsion of non-expansible clay and oil). The plasticine surface, reproducing surfaces of arable soils, was then wetted and dirtied with a very fine timber sawdust. This reduced the natural hydrophobic behaviour of the plasticine to an undetectable value. Storage experiments were conducted with plasticine rough surfaces on top of large rigid polystyrene plates inclined at different slope gradient: 2%, 5%, 10%, 20%, 30%. Roughness data collected on the generated plasticine surfaces were successfully compared with roughness data collected on real soil surfaces for similar conditions. A set of roughness indices was computed for each surface using roughness profiles measured with a laser profile meter. Roughness indices included quantiles of the Abbot-Firestone curve, which is used in surface metrology for industrial application to characterize surface roughness in a non-parametric approach ( Whitehouse, 1994). Storage data were fitted with an empirical equation (double negative exponential of roughness and slope). Several roughness indices resulted well related to storage. The better results were obtained using the Abbot-Firestone curve parameter P100. Beside this storage empirical model (SEM) a geometrical model was also developed, trying to give a more physical basis to the result obtained so far. Depression geometry was approximated with spherical cups. A general physical model was derived (storage cup model - SCM). The cup approximation identifies where roughness elevation comes in and how it relates to slope gradient in defining depression volume. Moreover, the exponential decay used for assessing slope effect on storage volume in the empirical model of Eqs. (8) and (9) emerges as consistent with distribution of cup sizes.

Whole genome and transcriptome analyses of environmental antibiotic sensitive and multi-resistant Pseudomonas aeruginosa isolates exposed to waste water and tap water

PubMed Central

Schwartz, Thomas; Armant, Olivier; Bretschneider, Nancy; Hahn, Alexander; Kirchen, Silke; Seifert, Martin; Dötsch, Andreas

2015-01-01

The fitness of sensitive and resistant Pseudomonas aeruginosa in different aquatic environments depends on genetic capacities and transcriptional regulation. Therefore, an antibiotic-sensitive isolate PA30 and a multi-resistant isolate PA49 originating from waste waters were compared via whole genome and transcriptome Illumina sequencing after exposure to municipal waste water and tap water. A number of different genomic islands (e.g. PAGIs, PAPIs) were identified in the two environmental isolates beside the highly conserved core genome. Exposure to tap water and waste water exhibited similar transcriptional impacts on several gene clusters (antibiotic and metal resistance, genetic mobile elements, efflux pumps) in both environmental P. aeruginosa isolates. The MexCD-OprJ efflux pump was overexpressed in PA49 in response to waste water. The expression of resistance genes, genetic mobile elements in PA49 was independent from the water matrix. Consistently, the antibiotic sensitive strain PA30 did not show any difference in expression of the intrinsic resistance determinants and genetic mobile elements. Thus, the exposure of both isolates to polluted waste water and oligotrophic tap water resulted in similar expression profiles of mentioned genes. However, changes in environmental milieus resulted in rather unspecific transcriptional responses than selected and stimuli-specific gene regulation. PMID:25186059

The momentum transfer of incompressible turbulent separated flow due to cavities with steps

NASA Technical Reports Server (NTRS)

White, R. E.; Norton, D. J.

1977-01-01

An experimental study was conducted using a plate test bed having a turbulent boundary layer to determine the momentum transfer to the faces of step/cavity combinations on the plate. Experimental data were obtained from configurations including an isolated configuration and an array of blocks in tile patterns. A momentum transfer correlation model of pressure forces on an isolated step/cavity was developed with experimental results to relate flow and geometry parameters. Results of the experiments reveal that isolated step/cavity excrecences do not have a unique and unifying parameter group due in part to cavity depth effects and in part to width parameter scale effects. Drag predictions for tile patterns by a kinetic pressure empirical method predict experimental results well. Trends were not, however, predicted by a method of variable roughness density phenomenology.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miller, Thomas Martin; Patton, Bruce W.; Weber, Charles F.

The primary goal of this project is to evaluate x-ray spectra generated within a scanning electron microscope (SEM) to determine elemental composition of small samples. This will be accomplished by performing Monte Carlo simulations of the electron and photon interactions in the sample and in the x-ray detector. The elemental inventories will be determined by an inverse process that progressively reduces the difference between the measured and simulated x-ray spectra by iteratively adjusting composition and geometric variables in the computational model. The intended benefit of this work will be to develop a method to perform quantitative analysis on substandard samplesmore » (heterogeneous phases, rough surfaces, small sizes, etc.) without involving standard elemental samples or empirical matrix corrections (i.e., true standardless quantitative analysis).« less

Remineralization of early enamel caries lesions using different bioactive elements containing toothpastes: An in vitro study.

PubMed

Wang, Yu; Mei, Li; Gong, Lin; Li, Jialing; He, Shaowei; Ji, Yan; Sun, Weibin

2016-09-14

Demineralization can be arrested or reversed when remineralization agents are applied to incipient carious or non-cavitated carious lesions. A large number of therapeutic agents including non-fluoridated products have been developed to promote enamel remineralization. This study aims to evaluate the efficacy of different bioactive elements containing toothpastes in remineralization of artificial enamel lesions. Artificial carious lesions were created on 40 human enamel slabs, and were randomly divided into four groups: (1) control group (no treatment), (2) casein phosphopeptide-amorphous calcium phosphate group (CPP-ACP, GC Tooth Mousse), (3) 8% arginine and calcium carbonate group (ACC, Colgate Sensitive Pro-Relief), (4) calcium sodium phosphosilicate group (CSP, NovaMin®). All samples were subjected to 15 days of pH-cycling. Subsequently, a one-hour acid resistance test was carried out. Surface hardness of the samples was assessed using the Knoop hardness test, and surface morphology and roughness were assessed by scanning electron microscopy (SEM) and atomic force microscopy (AFM). Data were analyzed using one-way ANOVA, Tukey's test and paired t test. The three tested toothpastes exhibited a significantly higher remineralization efficacy compared with the control group (P< 0.05 for all). After pH-cycling, the specimens treated with Colgate Sensitive Pro-Relief and NovaMin® showed a significant higher surface hardness (P< 0.001 and P= 0.03, respectively) and lower surface roughness (P< 0.05 for both) compared those treated with GC Tooth Mousse. While after the acid resistance test, all groups showed a significant loss of surface hardness (P< 0.001 for all) and significant increase of surface roughness (P< 0.05). The specimens treated with Colgate Sensitive Pro-Relief and NovaMin® still showed a significant higher surface hardness and lower surface roughness in comparison with those treated with GC Tooth Mousse (P< 0.05 for all). No significant difference was found in surface hardness and roughness between Colgate Sensitive Pro-Relief and NovaMin® during the pH-cycling test and acid resistance test (P= 0.45 and P= 0.83, respectively). Colgate Sensitive Pro-Relief and NovaMin® present an advantage in enhancing remineralization and inhibiting demineralization for early enamel carious lesions in comparison with GC Tooth Mousse.

Characterization of the repetitive DNA elements in the genome of fish lymphocystis disease viruses.

PubMed

Schnitzler, P; Darai, G

1989-09-01

The complete DNA nucleotide sequence of the repetitive DNA elements in the genome of fish lymphocystis disease virus (FLDV) isolated from two different species (flounder and dab) was determined. The size of these repetitive DNA elements was found to be 1413 bp which corresponds to the DNA sequences of the 5' terminus of the EcoRI DNA fragment B (0.034 to 0.052 m.u.) and to the EcoRI DNA fragment M (0.718 to 0.736 m.u.) of the FLDV genome causing lymphocystis disease in flounder and plaice. The degree of DNA nucleotide homology between both regions was found to be 99%. The repetitive DNA element in the genome of FLDV isolated from other fish species (dab) was identified and is located within the EcoRI DNA fragment B and J of the viral genome. The DNA nucleotide sequence of one duplicate of this repetition (EcoRI DNA fragment J) was determined (1410 bp) and compared to the DNA nucleotide sequences of the repetitive DNA elements of the genome of FLDV isolated from flounder. It was found that the repetitive DNA elements of the genome of FLDV derived from two different fish species are highly conserved and possess a degree of DNA sequence homology of 94%. The DNA sequences of each strand of the individual repetitive element possess one open reading frame.

FARME DB: a functional antibiotic resistance element database

PubMed Central

Wallace, James C.; Port, Jesse A.; Smith, Marissa N.; Faustman, Elaine M.

2017-01-01

Antibiotic resistance (AR) is a major global public health threat but few resources exist that catalog AR genes outside of a clinical context. Current AR sequence databases are assembled almost exclusively from genomic sequences derived from clinical bacterial isolates and thus do not include many microbial sequences derived from environmental samples that confer resistance in functional metagenomic studies. These environmental metagenomic sequences often show little or no similarity to AR sequences from clinical isolates using standard classification criteria. In addition, existing AR databases provide no information about flanking sequences containing regulatory or mobile genetic elements. To help address this issue, we created an annotated database of DNA and protein sequences derived exclusively from environmental metagenomic sequences showing AR in laboratory experiments. Our Functional Antibiotic Resistant Metagenomic Element (FARME) database is a compilation of publically available DNA sequences and predicted protein sequences conferring AR as well as regulatory elements, mobile genetic elements and predicted proteins flanking antibiotic resistant genes. FARME is the first database to focus on functional metagenomic AR gene elements and provides a resource to better understand AR in the 99% of bacteria which cannot be cultured and the relationship between environmental AR sequences and antibiotic resistant genes derived from cultured isolates. Database URL: http://staff.washington.edu/jwallace/farme PMID:28077567

Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes.

PubMed

Szeverényi, I; Hodel, A; Arber, W; Olasz, F

1996-09-26

We constructed and characterized a novel trap vector for rapid isolation of insertion sequences. The strategy used for the isolation of IS elements is based on the ability of many IS elements to turn on the expression of otherwise silent genes distal to some sites of insertion. The simple transposition of an IS element can sometimes cause the constitutive expression of promoterless antibiotic resistance genes resulting in selectable phenotypes. The trap vector pAW1326 is based on a pBR322 replicon, it carries ampicillin and streptomycin resistance genes, and also silenced genes that confer chloramphenicol and kanamycin resistance once activated. The trap vector pAW1326 proved to be efficient and 85 percent of all isolated mutations were insertions. The majority of IS elements resident in the studied Escherichia coli strains tested became trapped, namely IS2, IS3, IS5, IS150, IS186 and Tn1000. We also encountered an insertion sequence, called IS10L/R-2, which is a hybrid of the two IS variants IS10L and IS10R. IS10L/R-2 is absent from most E. coli strains, but it is detectable in some strains such as JM109 which had been submitted to Tn10 mutagenesis. The distribution of the insertion sequences within the trap region was not random. Rather, the integration of chromosomal mobile genetic elements into the offered target sequence occurred in element-specific clusters. This is explained both by the target specificity and by the specific requirements for the activation of gene transcription by the DNA rearrangement. The employed trap vector pAW1326 proved to be useful for the isolation of mobile genetic elements, for a demonstration of their transposition activity as well as for the further characterization of some of the functional parameters of transposition.

Phenotypes, serotypes and antibiotic susceptibility of Swedish Porphyromonas gingivalis isolates from periodontitis and periodontal abscesses.

PubMed

Dahlén, G; Gmür, R; Yoshino, T

2007-04-01

This study was conducted to reveal phenotypic, serological subtypes and antibiotic susceptibility among fresh isolates of Porphyromonas gingivalis in a Swedish population with periodontitis and periodontal abscess. Fifty-five subgingival strains were isolated and tentatively designated as P. gingivalis from 55 consecutive paper-point samples taken from 51 patients with periodontitis (at least one site with >6-mm pocket depth) in Sweden and were sent in for microbiological evaluation. Eight P. gingivalis strains from periodontal abscesses were also included. Four P. gingivalis strains served as reference and another four type strains were included. The strains were characterized by colony morphology, biochemical tests, enzyme profile, gas-liquid chromatography and antibiotic susceptibility. The strains were further characterized for whole cell protein profiles using sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and were identified to serotype by specific monoclonal antibodies. Among the 55 P. gingivalis strains 35 had smooth (S), 13 rough (R) and seven semi-rough colony morphologies. All strains were phenotypically homogeneous in biochemical tests, enzyme profile and antibiotic susceptibility. All strains produced phenylacetic acid and alpha-fucosidase. Almost all (96%) of the subgingival strains, but relatively fewer (62%) of the abscess strains, belonged to serotype A. Two subgingival and three abscess strains were classified as serotype B. No specific SDS-PAGE protein profiles were recorded for the two serotypes. The P. gingivalis strains from Swedish periodontitis cases showed homogeneity in terms of biochemical phenotypes and antibiotic susceptibility patterns. The strains fell into two serotypes, of which serotype A predominated in the periodontitis cases and serotype B was overrepresented in periodontal abscesses.

Cellulose- and xylan-degrading thermophilic anaerobic bacteria from biocompost.

PubMed

Sizova, M V; Izquierdo, J A; Panikov, N S; Lynd, L R

2011-04-01

Nine thermophilic cellulolytic clostridial isolates and four other noncellulolytic bacterial isolates were isolated from self-heated biocompost via preliminary enrichment culture on microcrystalline cellulose. All cellulolytic isolates grew vigorously on cellulose, with the formation of either ethanol and acetate or acetate and formate as principal fermentation products as well as lactate and glycerol as minor products. In addition, two out of nine cellulolytic strains were able to utilize xylan and pretreated wood with roughly the same efficiency as for cellulose. The major products of xylan fermentation were acetate and formate, with minor contributions of lactate and ethanol. Phylogenetic analyses of 16S rRNA and glycosyl hydrolase family 48 (GH48) gene sequences revealed that two xylan-utilizing isolates were related to a Clostridium clariflavum strain and represent a distinct novel branch within the GH48 family. Both isolates possessed high cellulase and xylanase activity induced independently by either cellulose or xylan. Enzymatic activity decayed after growth cessation, with more-rapid disappearance of cellulase activity than of xylanase activity. A mixture of xylan and cellulose was utilized simultaneously, with a significant synergistic effect observed as a reduction of lag phase in cellulose degradation.

Design and evaluation of a failure detection and isolation algorithm for restructurable control systems

NASA Technical Reports Server (NTRS)

Weiss, Jerold L.; Hsu, John Y.

1986-01-01

The use of a decentralized approach to failure detection and isolation for use in restructurable control systems is examined. This work has produced: (1) A method for evaluating fundamental limits to FDI performance; (2) Application using flight recorded data; (3) A working control element FDI system with maximal sensitivity to critical control element failures; (4) Extensive testing on realistic simulations; and (5) A detailed design methodology involving parameter optimization (with respect to model uncertainties) and sensitivity analyses. This project has concentrated on detection and isolation of generic control element failures since these failures frequently lead to emergency conditions and since knowledge of remaining control authority is essential for control system redesign. The failures are generic in the sense that no temporal failure signature information was assumed. Thus, various forms of functional failures are treated in a unified fashion. Such a treatment results in a robust FDI system (i.e., one that covers all failure modes) but sacrifices some performance when detailed failure signature information is known, useful, and employed properly. It was assumed throughout that all sensors are validated (i.e., contain only in-spec errors) and that only the first failure of a single control element needs to be detected and isolated. The FDI system which has been developed will handle a class of multiple failures.

Significant improvement in the thermal annealing process of optical resonators

NASA Astrophysics Data System (ADS)

Salzenstein, Patrice; Zarubin, Mikhail

2017-05-01

Thermal annealing performed during process improves the quality of the roughness of optical resonators reducing stresses at the periphery of their surface thus allowing higher Q-factors. After a preliminary realization, the design of the oven and the electronic method were significantly improved thanks to nichrome resistant alloy wires and chopped basalt fibers for thermal isolation during the annealing process. Q-factors can then be improved.

An Assessment of the Common Carrier Shipping Environment

DTIC Science & Technology

1979-01-01

resistance to ’damage of the, item to be protected or packaged, and (3) a knowledge of the performance i/ Maintained at Madison, Wis., in cOoperation...the damage attributed to shippers, while rough handling accounted for 80 percent of the damage attributed to carriers. Results of surveys of this tyre ...vibration environment in tractor trailers. Tests were conducted to determine the effect of suspension system (conventioaal steel spring, rubber isolator

Complete Genome Sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700▿

PubMed Central

Di Bonaventura, Maria Pia; DeSalle, Rob; Pop, Mihai; Nagarajan, Niranjan; Figurski, David H.; Fine, Daniel H.; Kaplan, Jeffrey B.; Planet, Paul J.

2009-01-01

We report the finished and annotated genome sequence of Aggregatibacter aphrophilus strain NJ8700, a strain isolated from the oral flora of a healthy individual, and discuss characteristics that may affect its dual roles in human health and disease. This strain has a rough appearance, and its genome contains genes encoding a type VI secretion system and several factors that may participate in host colonization. PMID:19447908

Pathogenicity of Peptostreptococcus micros morphotypes and Prevotella species in pure and mixed culture.

PubMed

van Dalen, P J; van Deutekom-Mulder, E C; de Graaff, J; van Steenbergen, T J

1998-02-01

Recently, an atypical rough colony morphotype of Peptostreptococcus micros, a species which is found in ulcerating infections, including periodontitis, was isolated. The virulence of morphotypes alone and in combination with Prevotella intermedia and P. nigrescens was investigated both in vivo and in vitro. All strains tested induced abscesses containing fluid pus in a mouse skin model, and lesions caused by monocultures of the rough morphotype strains of P. micros were statistically significantly larger than those induced by the smooth morphotype strains. Inocula containing both morphotypes produced similar sized abscesses compared to mono-inocula containing the same bacterial load. Both Prevotella species induced small abscesses when inoculated alone, and when Pr. nigrescens was inoculated with one of the other strains, the abscesses were not significantly different from the abscesses induced by the mono-infections of this strain. Synergy, in terms of higher numbers of colony forming units (cfu) in the mixed inocula, was found for all combinations of the rough morphotypes of P. micros and both Prevotella spp. Pus from abscesses caused by combinations of Peptostreptococcus and Prevotella spp. transmitted the infection to other mice, but no abscesses were formed in mice inoculated with pus induced by mono-inocula. These results demonstrated synergic activity between both rough and smooth P. micros strains and oral Prevotella strains. The in-vitro co-culture experiments produced no evidence of growth stimulation. The effect of P. micros strains on the immune system was investigated by testing their ability to initiate luminol-dependent chemiluminescence of polymorphonuclear leucocytes in the presence and absence of human serum. In the latter, the rough morphotype strains initiated higher counts than the smooth morphotype strains. Further work is needed to elucidate the difference in virulence between the smooth and the rough morphotype cells of P. micros and the nature of the interaction with the Prevotella spp.

A review of micro-contact physics for microelectromechanical systems (MEMS) metal contact switches

NASA Astrophysics Data System (ADS)

Toler, Benjamin F.; Coutu, Ronald A., Jr.; McBride, John W.

2013-10-01

Innovations in relevant micro-contact areas are highlighted, these include, design, contact resistance modeling, contact materials, performance and reliability. For each area the basic theory and relevant innovations are explored. A brief comparison of actuation methods is provided to show why electrostatic actuation is most commonly used by radio frequency microelectromechanical systems designers. An examination of the important characteristics of the contact interface such as modeling and material choice is discussed. Micro-contact resistance models based on plastic, elastic-plastic and elastic deformations are reviewed. Much of the modeling for metal contact micro-switches centers around contact area and surface roughness. Surface roughness and its effect on contact area is stressed when considering micro-contact resistance modeling. Finite element models and various approaches for describing surface roughness are compared. Different contact materials to include gold, gold alloys, carbon nanotubes, composite gold-carbon nanotubes, ruthenium, ruthenium oxide, as well as tungsten have been shown to enhance contact performance and reliability with distinct trade offs for each. Finally, a review of physical and electrical failure modes witnessed by researchers are detailed and examined.

Artificial Roughness Encoding with a Bio-inspired MEMS- based Tactile Sensor Array

PubMed Central

Oddo, Calogero Maria; Beccai, Lucia; Felder, Martin; Giovacchini, Francesco; Carrozza, Maria Chiara

2009-01-01

A compliant 2×2 tactile sensor array was developed and investigated for roughness encoding. State of the art cross shape 3D MEMS sensors were integrated with polymeric packaging providing in total 16 sensitive elements to external mechanical stimuli in an area of about 20 mm2, similarly to the SA1 innervation density in humans. Experimental analysis of the bio-inspired tactile sensor array was performed by using ridged surfaces, with spatial periods from 2.6 mm to 4.1 mm, which were indented with regulated 1N normal force and stroked at constant sliding velocity from 15 mm/s to 48 mm/s. A repeatable and expected frequency shift of the sensor outputs depending on the applied stimulus and on its scanning velocity was observed between 3.66 Hz and 18.46 Hz with an overall maximum error of 1.7%. The tactile sensor could also perform contact imaging during static stimulus indentation. The experiments demonstrated the suitability of this approach for the design of a roughness encoding tactile sensor for an artificial fingerpad. PMID:22412304

Improved surface-roughness scattering and mobility models for multi-gate FETs with arbitrary cross-section and biasing scheme

NASA Astrophysics Data System (ADS)

Lizzit, D.; Badami, O.; Specogna, R.; Esseni, D.

2017-06-01

We present a new model for surface roughness (SR) scattering in n-type multi-gate FETs (MuGFETs) and gate-all-around nanowire FETs with fairly arbitrary cross-sections, its implementation in a complete device simulator, and the validation against experimental electron mobility data. The model describes the SR scattering matrix elements as non-linear transformations of interface fluctuations, which strongly influences the root mean square value of the roughness required to reproduce experimental mobility data. Mobility simulations are performed via the deterministic solution of the Boltzmann transport equation for a 1D-electron gas and including the most relevant scattering mechanisms for electronic transport, such as acoustic, polar, and non-polar optical phonon scattering, Coulomb scattering, and SR scattering. Simulation results show the importance of accounting for arbitrary cross-sections and biasing conditions when compared to experimental data. We also discuss how mobility is affected by the shape of the cross-section as well as by its area in gate-all-around and tri-gate MuGFETs.

Implementation of a roughness element to trip transition in large-eddy simulation

NASA Astrophysics Data System (ADS)

Boudet, J.; Monier, J.-F.; Gao, F.

2015-02-01

In aerodynamics, the laminar or turbulent regime of a boundary layer has a strong influence on friction or heat transfer. In practical applications, it is sometimes necessary to trip the transition to turbulent, and a common way is by use of a roughness element ( e.g. a step) on the wall. The present paper is concerned with the numerical implementation of such a trip in large-eddy simulations. The study is carried out on a flat-plate boundary layer configuration, with Reynolds number Rex=1.3×106. First, this work brings the opportunity to introduce a practical methodology to assess convergence in large-eddy simulations. Second, concerning the trip implementation, a volume source term is proposed and is shown to yield a smoother and faster transition than a grid step. Moreover, it is easier to implement and more adaptable. Finally, two subgrid-scale models are tested: the WALE model of Nicoud and Ducros ( Flow Turbul. Combust., vol. 62, 1999) and the shear-improved Smagorinsky model of Lévêque et al. ( J. Fluid Mech., vol. 570, 2007). Both models allow transition, but the former appears to yield a faster transition and a better prediction of friction in the turbulent regime.

Mars Science Laboratory Heatshield Aerothermodynamics: Design and Reconstruction

NASA Technical Reports Server (NTRS)

Edquist, Karl T.; Hollis, Brian R.; Johnston, Christopher O.; Bose, Deepak; White, Todd R.; Mahzari, Milad

2013-01-01

The Mars Science Laboratory heatshield was designed to withstand a fully turbulent heat pulse based on test results and computational analysis on a pre-flight design trajectory. Instrumentation on the flight heatshield measured in-depth temperatures in the thermal protection system. The data indicate that boundary layer transition occurred at 5 of 7 thermocouple locations prior to peak heating. Data oscillations at 3 pressure measurement locations may also indicate transition. This paper presents the heatshield temperature and pressure data, possible explanations for the timing of boundary layer transition, and a qualitative comparison of reconstructed and computational heating on the as-flown trajectory. Boundary layer Reynolds numbers that are typically used to predict transition are compared to observed transition at various heatshield locations. A uniform smooth-wall transition Reynolds number does not explain the timing of boundary layer transition observed during flight. A roughness-based Reynolds number supports the possibility of transition due to discrete or distributed roughness elements on the heatshield. However, the distributed roughness height would have needed to be larger than the pre-flight assumption. The instrumentation confirmed the predicted location of maximum turbulent heat flux near the leeside shoulder. The reconstructed heat flux at that location is bounded by smooth-wall turbulent calculations on the reconstructed trajectory, indicating that augmentation due to surface roughness probably did not occur. Turbulent heating on the downstream side of the heatshield nose exceeded smooth-wall computations, indicating that roughness may have augmented heating. The stagnation region also experienced heating that exceeded computational levels, but shock layer radiation does not fully explain the differences.

Micro-PIXE analysis of trace element concentrations of natural rubies from different locations in Myanmar

NASA Astrophysics Data System (ADS)

Sanchez, J. L.; Osipowicz, T.; Tang, S. M.; Tay, T. S.; Win, T. T.

1997-07-01

The trace element concentrations found in geological samples can shed light on the formation process. In the case of gemstones, which might be of artificial or natural origin, there is also considerable interest in the development of methods that provide identification of the origin of a sample. For rubies, trace element concentrations present in natural samples were shown previously to be significant indicators of the region of origin [S.M. Tang et al., Appl. Spectr. 42 (1988) 44, and 43 (1989) 219]. Here we report the results of micro-PIXE analyses of trace element (Ti, V, Cr, Fe, Cu and Ga) concentrations of a large set ( n = 130) of natural rough rubies from nine locations in Myanmar (Burma). The resulting concentrations are subjected to statistical analysis. Six of the nine groups form clusters when the data base is evaluated using tree clustering and principal component analysis.

Fuzzy sets, rough sets, and modeling evidence: Theory and Application. A Dempster-Shafer based approach to compromise decision making with multiattributes applied to product selection

NASA Technical Reports Server (NTRS)

Dekorvin, Andre

1992-01-01

The Dempster-Shafer theory of evidence is applied to a multiattribute decision making problem whereby the decision maker (DM) must compromise with available alternatives, none of which exactly satisfies his ideal. The decision mechanism is constrained by the uncertainty inherent in the determination of the relative importance of each attribute element and the classification of existing alternatives. The classification of alternatives is addressed through expert evaluation of the degree to which each element is contained in each available alternative. The relative importance of each attribute element is determined through pairwise comparisons of the elements by the decision maker and implementation of a ratio scale quantification method. Then the 'belief' and 'plausibility' that an alternative will satisfy the decision maker's ideal are calculated and combined to rank order the available alternatives. Application to the problem of selecting computer software is given.

Effects of Cavities and Protuberances on Transition over Hypersonic Vehicles

NASA Technical Reports Server (NTRS)

Chang, Chau-Lyan; Choudhari, Meelan M.; Li, Fei; Venkatachari, Balaji

2011-01-01

Surface protuberances and cavities on a hypersonic vehicle are known to cause several aerodynamic or aerothermodynamic issues. Most important of all, premature transition due to these surface irregularities can lead to a significant rise in surface heating. To help understand laminar-turbulent transition induced by protuberances or cavities on a Crew Exploration Vehicle (CEV) surface, high-fidelity numerical simulations are carried out for both types of trips on a CEV wind tunnel model. Due to the large bluntness, these surface irregularities reside in an accelerating subsonic boundary layer. For the Mach 6 wind tunnel conditions with a roughness Reynolds number Re(sub kk) of 800, it was found that a protuberance with a height to boundary layer thickness ratio of 0.73 leads to strong wake instability and spontaneous vortex shedding, while a cavity with identical geometry only causes a rather weak flow unsteadiness. The same cavity with a larger Reynolds number also leads to similar spontaneous vortex shedding and wake instability. The wake development and the formation of hairpin vortices for both protuberance and cavity were found to be qualitatively similar to that observed for an isolated hemisphere submerged in a subsonic, low speed flat-plate boundary layer. However, the shed vortices and their accompanying instability waves were found to be slightly stabilized downstream by the accelerating boundary layer along the CEV surface. Despite this stabilizing influence, it was found that the wake instability spreads substantially in both wall-normal and azimuthal directions as the flow is evolving towards a transitional state. Similarities and differences between the wake instability behind a protuberance and a cavity are investigated. Computations for the Mach 6 boundary layer over a slender cylindrical roughness element with a height to the boundary layer thickness of about 1.1 also shows spontaneous vortex shedding and strong wake instability. Comparisons of detailed flow structures associated with protuberances at subsonic and supersonic edge Mach numbers indicate distinctively different instability mechanisms.

The cytoskeletal system of nucleated erythrocytes. I. Composition and function of major elements

PubMed Central

1982-01-01

We have studied the dogfish erythrocyte cytoskeletal system, which consists of a marginal band of microtubules (MB) and trans-marginal band material (TBM). The TBM appeared in whole mounts as a rough irregular network and in thin sections as a surface-delimiting layer completely enclosing nucleus and MB. In cells incubated at 0 degrees C for 30 min or more, the MB disappeared but the TBM remained. MB reassembly occurred with rewarming, and was inhibited by colchicine. Flattened elliptical erythrocyte morphology was retained even when MBs were absent. Total solubilization of MB and TBM at low pH, or dissolution of whole anucleate cytoskeletons, yielded components comigrating with actin, spectrin, and tubulin standards during gel electrophoresis. Mass-isolated MBs, exhibiting ribbonlike construction apparently maintained by cross-bridges, contained four polypeptides in the tubulin region of the gel. Only these four bands were noticeably increased in the soluble phase obtained from cells with 0 degrees C- disassembled MBs. The best isolated MB preparations contained tubulin but no components comigrating with high molecular weight microtubule- associated proteins, spectrin, or actin. Actin and spectrin therefore appear to be major TBM constituents, with tubulin localized in the MB. The results are interpreted in terms of an actin- and spectrin- containing subsurface cytoskeletal layer (TBM), related to that of mammalian erythrocytes, which maintains cell shape in the absence of MBs. Observations on abnormal pointed erythrocytes containing similarly pointed MBs indicate further that the MB can deform the TBM from within so as to alter cell shape. MBs may function in this manner during normal cellular morphogenesis and during blood flow in vivo. PMID:6889600

Efficacy of Pulsed-Field Gel Electrophoresis and Repetitive Element Sequence-Based PCR in Typing of Salmonella Isolates from Assam, India.

PubMed

Gogoi, Purnima; Borah, Probodh; Hussain, Iftikar; Das, Leena; Hazarika, Girin; Tamuly, Shantanu; Barkalita, Luit Moni

2018-05-01

A total of 12 Salmonella isolates belonging to different serovars, viz , Salmonella enterica serovar Enteritidis ( n = 4), Salmonella enterica serovar Weltevreden ( n = 4), Salmonella enterica serovar Newport ( n = 1), Salmonella enterica serovar Litchifield ( n = 1), and untypeable strains ( n = 2) were isolated from 332 diarrheic fecal samples collected from animals, birds, and humans. Of the two molecular typing methods applied, viz , repetitive element sequence-based PCR (REP-PCR) and pulsed-field gel electrophoresis (PFGE), PFGE could clearly differentiate the strains belonging to different serovars as well as differentiate between strains of the same serovar with respect to their source of isolation, whereas REP-PCR could not differentiate between strains of the same serovar. Thus, it can be suggested that PFGE is more useful and appropriate for molecular typing of Salmonella isolates during epidemiological investigations than REP-PCR. Copyright © 2018 American Society for Microbiology.

Molecular characterization of the 2011 Hong Kong scarlet fever outbreak.

PubMed

Tse, Herman; Bao, Jessie Y J; Davies, Mark R; Maamary, Peter; Tsoi, Hoi-Wah; Tong, Amy H Y; Ho, Tom C C; Lin, Chi-Ho; Gillen, Christine M; Barnett, Timothy C; Chen, Jonathan H K; Lee, Mianne; Yam, Wing-Cheong; Wong, Chi-Kin; Ong, Cheryl-Lynn Y; Chan, Yee-Wai; Wu, Cheng-Wei; Ng, Tony; Lim, Wilina W L; Tsang, Thomas H F; Tse, Cindy W S; Dougan, Gordon; Walker, Mark J; Lok, Si; Yuen, Kwok-Yung

2012-08-01

A scarlet fever outbreak occurred in Hong Kong in 2011. The majority of cases resulted in the isolation of Streptococcus pyogenes emm12 with multiple antibiotic resistances. Phylogenetic analysis of 22 emm12 scarlet fever outbreak isolates, 7 temporally and geographically matched emm12 non-scarlet fever isolates, and 18 emm12 strains isolated during 2005-2010 indicated the outbreak was multiclonal. Genome sequencing of 2 nonclonal scarlet fever isolates (HKU16 and HKU30), coupled with diagnostic polymerase chain reaction assays, identified 2 mobile genetic elements distributed across the major lineages: a 64.9-kb integrative and conjugative element encoding tetracycline and macrolide resistance and a 46.4-kb prophage encoding superantigens SSA and SpeC and the DNase Spd1. Phenotypic comparison of HKU16 and HKU30 with the S. pyogenes M1T1 strain 5448 revealed that HKU16 displays increased adherence to HEp-2 human epithelial cells, whereas HKU16, HKU30, and 5448 exhibit equivalent resistance to neutrophils and virulence in a humanized plasminogen murine model. However, in contrast to M1T1, the virulence of HKU16 and HKU30 was not associated with covRS mutation. The multiclonal nature of the emm12 scarlet fever isolates suggests that factors such as mobile genetic elements, environmental factors, and host immune status may have contributed to the 2011 scarlet fever outbreak.

Molecular Characterization of the 2011 Hong Kong Scarlet Fever Outbreak

PubMed Central

Tse, Herman; Bao, Jessie Y. J.; Davies, Mark R.; Maamary, Peter; Tsoi, Hoi-Wah; Tong, Amy H. Y.; Ho, Tom C. C.; Lin, Chi-Ho; Gillen, Christine M.; Barnett, Timothy C.; Chen, Jonathan H. K.; Lee, Mianne; Yam, Wing-Cheong; Wong, Chi-Kin; Ong, Cheryl-lynn Y.; Chan, Yee-Wai; Wu, Cheng-Wei; Ng, Tony; Lim, Wilina W. L.; Tsang, Thomas H. F.; Tse, Cindy W. S.; Dougan, Gordon; Walker, Mark J.; Lok, Si; Yuen, Kwok-Yung

2012-01-01

A scarlet fever outbreak occurred in Hong Kong in 2011. The majority of cases resulted in the isolation of Streptococcus pyogenes emm12 with multiple antibiotic resistances. Phylogenetic analysis of 22 emm12 scarlet fever outbreak isolates, 7 temporally and geographically matched emm12 non–scarlet fever isolates, and 18 emm12 strains isolated during 2005–2010 indicated the outbreak was multiclonal. Genome sequencing of 2 nonclonal scarlet fever isolates (HKU16 and HKU30), coupled with diagnostic polymerase chain reaction assays, identified 2 mobile genetic elements distributed across the major lineages: a 64.9-kb integrative and conjugative element encoding tetracycline and macrolide resistance and a 46.4-kb prophage encoding superantigens SSA and SpeC and the DNase Spd1. Phenotypic comparison of HKU16 and HKU30 with the S. pyogenes M1T1 strain 5448 revealed that HKU16 displays increased adherence to HEp-2 human epithelial cells, whereas HKU16, HKU30, and 5448 exhibit equivalent resistance to neutrophils and virulence in a humanized plasminogen murine model. However, in contrast to M1T1, the virulence of HKU16 and HKU30 was not associated with covRS mutation. The multiclonal nature of the emm12 scarlet fever isolates suggests that factors such as mobile genetic elements, environmental factors, and host immune status may have contributed to the 2011 scarlet fever outbreak. PMID:22615319

Whole genome and transcriptome analyses of environmental antibiotic sensitive and multi-resistant Pseudomonas aeruginosa isolates exposed to waste water and tap water.

PubMed

Schwartz, Thomas; Armant, Olivier; Bretschneider, Nancy; Hahn, Alexander; Kirchen, Silke; Seifert, Martin; Dötsch, Andreas

2015-01-01

The fitness of sensitive and resistant Pseudomonas aeruginosa in different aquatic environments depends on genetic capacities and transcriptional regulation. Therefore, an antibiotic-sensitive isolate PA30 and a multi-resistant isolate PA49 originating from waste waters were compared via whole genome and transcriptome Illumina sequencing after exposure to municipal waste water and tap water. A number of different genomic islands (e.g. PAGIs, PAPIs) were identified in the two environmental isolates beside the highly conserved core genome. Exposure to tap water and waste water exhibited similar transcriptional impacts on several gene clusters (antibiotic and metal resistance, genetic mobile elements, efflux pumps) in both environmental P. aeruginosa isolates. The MexCD-OprJ efflux pump was overexpressed in PA49 in response to waste water. The expression of resistance genes, genetic mobile elements in PA49 was independent from the water matrix. Consistently, the antibiotic sensitive strain PA30 did not show any difference in expression of the intrinsic resistance determinants and genetic mobile elements. Thus, the exposure of both isolates to polluted waste water and oligotrophic tap water resulted in similar expression profiles of mentioned genes. However, changes in environmental milieus resulted in rather unspecific transcriptional responses than selected and stimuli-specific gene regulation. © 2014 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Successful Multiresistant Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from Taipei, Taiwan, That Carries Either the Novel Staphylococcal Chromosome Cassette mec (SCCmec) Type VT or SCCmec Type IV

PubMed Central

Boyle-Vavra, Susan; Ereshefsky, Ben; Wang, Chih-Chien; Daum, Robert S.

2005-01-01

Methicillin-resistant Staphylococcus aureus (MRSA) isolates carry the methicillin resistance gene (mecA) on a horizontally transferred genetic element called the staphylococcal chromosome cassette mec (SCCmec). Community-acquired MRSA (CAMRSA) isolates usually carry SCCmec type IV. We previously reported that 76% of 17 CAMRSA isolates (multilocus sequence type 59) obtained from pediatric patients with skin and soft tissue infections (SSTI) from Taipei did not carry SCCmec types I to IV. We used DNA sequence analysis to determine that the element harbored by these nontypeable isolates is a novel subtype of SCCmec V called SCCmec VT. It contains a ccrC recombinase gene variant (ccrC2) and mec complex C2. One SSTI isolate contained molecular features of SCCmec IV but also contained ccrC2 (a feature of SCCmec VT), suggesting that it may harbor a composite SCCmec element. The genes lukS-PV and lukF-PV encoding the Panton-Valentine leukocidin (PVL) were present in all CAMRSA SSTI isolates whether they contained SCCmec type IV or VT. SCCmec VT was also present in 5 of 34 (14.7%) CAMRSA colonization isolates collected from healthy children from Taipei who lacked MRSA risk factors. Four (80%) of the these isolates contained lukS-PV and lukF-PV, as did 1 of 27 (3.7%) SCCmec IV-containing colonization isolates. A total of 63% (10 of 16) of the SSTI isolates and 61.7% (21 of 34) of the colonization isolates tested were resistant to at least four classes of non-β-lactam antimicrobials. SCCmec VT is a novel SCCmec variant that is found in multiply resistant CAMRSA strains with sequence type 59 in Taipei in association with the PVL leukotoxin genes. PMID:16145133

Bursting process of large- and small-scale structures in turbulent boundary layer perturbed by a cylinder roughness element

NASA Astrophysics Data System (ADS)

Tang, Zhanqi; Jiang, Nan; Zheng, Xiaobo; Wu, Yanhua

2016-05-01

Hot-wire measurements on a turbulent boundary layer flow perturbed by a wall-mounted cylinder roughness element (CRE) are carried out in this study. The cylindrical element protrudes into the logarithmic layer, which is similar to those employed in turbulent boundary layers by Ryan et al. (AIAA J 49:2210-2220, 2011. doi: 10.2514/1.j051012) and Zheng and Longmire (J Fluid Mech 748:368-398, 2014. doi: 10.1017/jfm.2014.185) and in turbulent channel flow by Pathikonda and Christensen (AIAA J 53:1-10, 2014. doi: 10.2514/1.j053407). The similar effects on both the mean velocity and Reynolds stress are observed downstream of the CRE perturbation. The series of hot-wire data are decomposed into large- and small-scale fluctuations, and the characteristics of large- and small-scale bursting process are observed, by comparing the bursting duration, period and frequency between CRE-perturbed case and unperturbed case. It is indicated that the CRE perturbation performs the significant impact on the large- and small-scale structures, but within the different impact scenario. Moreover, the large-scale bursting process imposes a modulation on the bursting events of small-scale fluctuations and the overall trend of modulation is not essentially sensitive to the present CRE perturbation, even the modulation extent is modified. The conditionally averaging fluctuations are also plotted, which further confirms the robustness of the bursting modulation in the present experiments.

Transparent electrodes made with ultrasonic spray coating technique for flexible heaters

NASA Astrophysics Data System (ADS)

Wroblewski, G.; Krzemiński, J.; Janczak, D.; Sowiński, J.; Jakubowska, M.

2017-08-01

Transparent electrodes are one of the basic elements of various electronic components. The paper presents the preliminary results related to novel method of ultrasonic spray coating used for fabrication of transparent flexible electrodes. Experiments were conducted by means of specially made laboratory setup composed of ultrasonic spray generator and XYZ plotter. In the first part of the paper diverse solvents were used to determine the crucial technological parameters such as atomization voltage and fluid flow velocity. Afterwards paint containing carbon nanotubes suspended in the two solvent system was prepared and deposited on the polyethylene terephthalate foil. Thickness, roughness and electrical measurements were performed to designate the relations of technological parameters of ultrasonic spray coating on thickness, roughness, sheet resistance and optical transmission of fabricated samples.

Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete.

PubMed

Linos, Alexandros; Berekaa, Mahmoud M; Steinbüchel, Alexander; Kim, Kwang Kyu; Sproer, Cathrin; Kroppenstedt, Reiner M

2002-07-01

A cis-1,4-polyisoprene-degrading bacterium (strain Kb2T) was isolated from foul water taken from the inside of a deteriorated automobile tyre found on a farmer's field in Westfalia, Germany. The strain was aerobic, Gram-positive, exhibited orange smooth and rough colonies on complex nutrient agar, produced elementary branching hyphae that fragmented into rod/coccus-like elements and showed chemotaxonomic markers which were consistent with its classification within the genus Gordonia, i.e. the presence of mesodiaminopimelic acid, arabinose and galactose in whole-cell hydrolysates (cell-wall chemotype IV), N-glycolylmuramic acid in the peptidoglycan wall, a fatty-acid pattern composed of unbranched saturated and monounsaturated fatty acids plus tuberculostearic acid, mycolic acids comprising 56-60 carbon atoms and MK-9(H2) as the only menaquinone. The 16S rDNA sequence of strain Kb2T was found to be most similar to the 16S rDNA sequences of the type strains of Gordonia alkanivorans (DSM 44369T) and Gordonia nitida (KCTC 0605BPT). However, DNA-DNA relatedness data showed that strain Kb2T ( =DSM 44215T NRRL B-24152T) could be distinguished from these two species and represented a new species within the genus Gordonia, for which the name Gordonia westfalica is proposed.

Fine Structure and Molecular Phylogeny of Parametopidium circumlabens (Ciliophora: Armophorea), Endocommensal of Sea Urchins.

PubMed

da Silva-Neto, Inácio Domingos; da Silva Paiva, Thiago; do Nascimento Borges, Bárbara; Harada, Maria Lúcia

2016-01-01

Metopid armophoreans are ciliates commonly found in anaerobic environments worldwide; however, very little is known of their fine structure. In this study, the metopid Parametopidium circumlabens (Biggar and Wenrich 1932) Aescht, 1980, a common endocommensal of sea urchins, is investigated for the first time with emphasis on transmission electron microscopy, revealing several previously unknown elements of its morphology. Somatic dikinetids of P. circumlabens have a typical ribbon of transverse microtubules, an isolated microtubule near triplets 4 and 5 of the anterior kinetosome, plus two other microtubules between anterior and posterior kinetosomes, a short kinetodesmal striated fiber and long postciliary microtubules. In the dikinetids of the perizonal stripe, the kinetodesmal fiber is very pronounced, and there is a conspicuous microfibrillar network system associated with the kinetosomes. A new structure, shaped as a dense, roughly cylindrical mass surrounded by microtubules, is found associated with the posterior kinetosome of perizonal dikinetids. The paroral membrane is diplostichomonad and the adoral membranelles are of the "paramembranelle" type. Bayesian inference and maximum-likelihood analysis of the 18S-rDNA gene unambiguously placed P. circumlabens as sister group of the cluster formed by ((Atopospira galeata, Atopospira violacea) Metopus laminarius) + Clevelandellida, corroborating its classification within the Metopida. © 2015 The Author(s) Journal of Eukaryotic Microbiology © 2015 International Society of Protistologists.

Penicillium koreense sp. nov., isolated from various soils in Korea.

PubMed

You, Young-Hyun; Cho, Hye Sun; Song, Jaekyeong; Kim, Dae-Ho; Houbraken, Jos; Hong, Seung-Beom

2014-12-28

During an investigation of the fungal diversity of Korean soils, four Penicillium strains could not be assigned to any described species. The strains formed monoverticillate conidiophores with occasionally a divaricate branch. The conidia were smooth or finely rough-walled, globose to broadly ellipsoidal and 2.5-3.5 × 2.0-3.0 μm in size. Their taxonomic novelty was determined using partial β-tubulin gene sequences and the ribosomal internal transcribed spacer region. The phylogenetic analysis showed that the isolates belonged to section Lanata- Divaricata and were most closely related to Penicillium raperi. Phenotypically, the strains differed from P. raperi in having longer and thicker stipes and thicker phialides. Strain KACC 47721(T) from bamboo field soil was designated as the type strain of the new species, and the species was named Penicillium koreense sp. nov., as it was isolated from various regions in Korea.

Passive isolation/damping system for the Hubble space telescope reaction wheels

NASA Technical Reports Server (NTRS)

Hasha, Martin D.

1987-01-01

NASA's Hubble Space Telescope contain large, diffraction limited optics with extraordinary resolution and performance for surpassing existing observatories. The need to reduce structural borne vibration and resultant optical jitter from critical Pointing Control System components, Reaction Wheels, prompted the feasibility investigation and eventual development of a passive isolation system. Alternative design concepts considered were required to meet a host of stringent specifications and pass rigid tests to be successfully verified and integrated into the already built flight vehicle. The final design employs multiple arrays of fluid damped springs that attenuate over a wide spectrum, while confining newly introduced resonances to benign regions of vehicle dynamic response. Overall jitter improvement of roughly a factor of 2 to 3 is attained with this system. The basis, evolution, and performance of the isolation system, specifically discussing design concepts considered, optimization studies, development lessons learned, innovative features, and analytical and ground test verified results are presented.

Differentiation characteristics and source analysis of heavy metals in typical brown soil under different vegetation

NASA Astrophysics Data System (ADS)

Dong, Zhicheng; Zhang, Lina; Li, Xueshuang; Lv, Shuangyan; He, Shijie; Liu, Ying; Ma, Xuanxuan

2017-08-01

Anomalous enrichment of soil elements (especially heavy metals) has aroused popular attention in China. In order to discuss distribution characteristics and analyze sources of elements in brown soil, field investigation and sample collection were carried out under different vegetation (cherry, apple, bamboos and pine) in Qixia, a typical apple production base in China. Element contents, pH, electrical conductivity (EC) and magnetic susceptibility (MS) were tested. Results showed that element concentrations were about roughly 2.48 times as China’s background values, while significantly lower than the class ii of National soil Environment Quality Standard (Ni excepted). Meanwhile, vertical distribution and accumulation characteristics of elements in typical brown soil were significantly different under different vegetation. In detail, elements (Zn excepted) of Pine soil accumulated in surface, while they (Cd, Arsenic excepted) increased with depth under other vegetation. Moreover, pH and EC changed like elements, while MS was exactly opposite. It was found that those differences above were mainly caused by human activities (such as improper use of fertilizer, pesticide and inadequate use of organic fertilizer, etc.). Additionally, differences in composition and decomposition rate of vegetation litter also resulted in vertical differentiations of soil elements under different vegetation.

Microgravity

NASA Image and Video Library

1998-10-10

Isolation of human mammary epithelial cells (HMEC) from breast cancer susceptible tissue; A: Duct element recovered from breast tissue digest. B: Outgrowth of cells from duct element in upper right corner cultured in a standard dish; most cells spontaneousely die during early cell divisions, but a few will establish long-term growth. C: Isolate of long-term frowth HMEC from outgrowth of duct element; cells shown soon after isolation and in early full-cell contact growth in culture in a dish. D: same long-term growth HMEC, but after 3 weeks in late full-cell contact growth in a continuous culture in a dish. Note attempts to reform duct elements but this in two demensions in a dish rather than in three dimensions in tissue. NASA's Marshall Space Flight Center (MSFC) is sponsoring research with Bioreactors, rotating wall vessels designed to grow tissue samples in space, to understand how breast cancer works. This ground-based work studies the growth and assembly of human mammary epithelial cell (HMEC) from breast cancer susceptible tissue. Radiation can make the cells cancerous, thus allowing better comparisons of healthy vs. tunorous tissue. Credit: Dr. Robert Richmond, NASA/Marshall Space Flight Center (MSFC).

Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.

PubMed

Zhang, Quan; Ye, Yuzhen

2017-02-06

The CRISPR-Cas systems in prokaryotes are RNA-guided immune systems that target and deactivate foreign nucleic acids. A typical CRISPR-Cas system consists of a CRISPR array of repeat and spacer units, and a locus of cas genes. The CRISPR and the cas locus are often located next to each other in the genomes. However, there is no quantitative estimate of the co-location. In addition, ad-hoc studies have shown that some non-CRISPR genomic elements contain repeat-spacer-like structures and are mistaken as CRISPRs. Using available genome sequences, we observed that a significant number of genomes have isolated cas loci and/or CRISPRs. We found that 11%, 22% and 28% of the type I, II and III cas loci are isolated (without CRISPRs in the same genomes at all or with CRISPRs distant in the genomes), respectively. We identified a large number of genomic elements that superficially reassemble CRISPRs but don't contain diverse spacers and have no companion cas genes. We called these elements false-CRISPRs and further classified them into groups, including tandem repeats and Staphylococcus aureus repeat (STAR)-like elements. This is the first systematic study to collect and characterize false-CRISPR elements. We demonstrated that false-CRISPRs could be used to reduce the false annotation of CRISPRs, therefore showing them to be useful for improving the annotation of CRISPR-Cas systems.

Numerical Simulations of Hypersonic Boundary Layer Transition

NASA Astrophysics Data System (ADS)

Bartkowicz, Matthew David

Numerical schemes for supersonic flows tend to use large amounts of artificial viscosity for stability. This tends to damp out the small scale structures in the flow. Recently some low-dissipation methods have been proposed which selectively eliminate the artificial viscosity in regions which do not require it. This work builds upon the low-dissipation method of Subbareddy and Candler which uses the flux vector splitting method of Steger and Warming but identifies the dissipation portion to eliminate it. Computing accurate fluxes typically relies on large grid stencils or coupled linear systems that become computationally expensive to solve. Unstructured grids allow for CFD solutions to be obtained on complex geometries, unfortunately, it then becomes difficult to create a large stencil or the coupled linear system. Accurate solutions require grids that quickly become too large to be feasible. In this thesis a method is proposed to obtain more accurate solutions using relatively local data, making it suitable for unstructured grids composed of hexahedral elements. Fluxes are reconstructed using local gradients to extend the range of data used. The method is then validated on several test problems. Simulations of boundary layer transition are then performed. An elliptic cone at Mach 8 is simulated based on an experiment at the Princeton Gasdynamics Laboratory. A simulated acoustic noise boundary condition is imposed to model the noisy conditions of the wind tunnel and the transitioning boundary layer observed. A computation of an isolated roughness element is done based on an experiment in Purdue's Mach 6 quiet wind tunnel. The mechanism for transition is identified as an instability in the upstream separation region and a comparison is made to experimental data. In the CFD a fully turbulent boundary layer is observed downstream.

Development of an optimized electrochemical process for subsequent coating of 316 stainless steel for stent applications.

PubMed

Haïdopoulos, M; Turgeon, S; Sarra-Bournet, C; Laroche, G; Mantovani, D

2006-07-01

Metallic endovascular stents are used as medical devices to scaffold biological lumen, most often diseased arteries, after balloon angioplasty. They are commonly made of 316L stainless steel or Nitinol, two alloys containing nickel, an element classified as potentially toxic and carcinogenic by the International Agency for Research on Cancer. Although they are largely implanted, the long-term safety of such metallic elements is still controversial, since the corrosion processes may lead to the release of several metallic ions, including nickel ions in diverse oxidation states. To avoid metallic ion release in the body, the strategy behind this work was to develop a process aiming the complete isolation of the stainless steel device from the body fluids by a thin, cohesive and strongly adherent coating of RF-plasma-polymerized fluoropolymer. Nevertheless, prior to the polymer film deposition, an essential aspect was the development of a pre-treatment for the metallic substrate, based on the electrochemical polishing process, aiming the removal of any fragile interlayer, including the native oxide layer and the carbon contaminated layer, in order to obtain a smooth, defect-free surface to optimize the adhesion of the plasma-deposited thin film. In this work, the optimized parameters for electropolishing, such as the duration and the temperature of the electrolysis, and the complementary acid dipping were presented and accurately discussed. Their effects on roughness as well as on the evolution of surface topography were investigated by Atomic Force Microscopy, stylus profilometry and Scanning Electron Microscopy. The modifications induced on the surface atomic concentrations were studied by X-ray Photoelectron Spectroscopy. The improvements in terms of the surface morphology after the pre-treatment were also emphasized, as well as the influence of the original stainless steel surface finish.

Deformation analysis of rotary combustion engine housings

NASA Technical Reports Server (NTRS)

Vilmann, Carl

1991-01-01

This analysis of the deformation of rotary combustion engine housings targeted the following objectives: (1) the development and verification of a finite element model of the trochoid housing, (2) the prediction of the stress and deformation fields present within the trochoid housing during operating conditions, and (3) the development of a specialized preprocessor which would shorten the time necessary for mesh generation of a trochoid housing's FEM model from roughly one month to approximately two man hours. Executable finite element models were developed for both the Mazda and the Outboard Marine Corporation trochoid housings. It was also demonstrated that a preprocessor which would hasten the generation of finite element models of a rotary engine was possible to develop. The above objectives are treated in detail in the attached appendices. The first deals with finite element modeling of a Wankel engine center housing, and the second with the development of a preprocessor that generates finite element models of rotary combustion engine center housings. A computer program, designed to generate finite element models of user defined rotary combustion engine center housing geometries, is also included.

A cost-effective laser scanning method for mapping stream channel geometry and roughness

NASA Astrophysics Data System (ADS)

Lam, Norris; Nathanson, Marcus; Lundgren, Niclas; Rehnström, Robin; Lyon, Steve

2015-04-01

In this pilot project, we combine an Arduino Uno and SICK LMS111 outdoor laser ranging camera to acquire high resolution topographic area scans for a stream channel. The microprocessor and imaging system was installed in a custom gondola and suspended from a wire cable system. To demonstrate the systems capabilities for capturing stream channel topography, a small stream (< 2m wide) in the Krycklan Catchment Study was temporarily diverted and scanned. Area scans along the stream channel resulted in a point spacing of 4mm and a point cloud density of 5600 points/m2 for the 5m by 2m area. A grain size distribution of the streambed material was extracted from the point cloud using a moving window, local maxima search algorithm. The median, 84th and 90th percentiles (common metrics to describe channel roughness) of this distribution were found to be within the range of measured values while the largest modelled element was approximately 35% smaller than its measured counterpart. The laser scanning system captured grain sizes between 30mm and 255mm (coarse gravel/pebbles and boulders based on the Wentworth (1922) scale). This demonstrates that our system was capable of resolving both large-scale geometry (e.g. bed slope and stream channel width) and small-scale channel roughness elements (e.g. coarse gravel/pebbles and boulders) for the study area. We further show that the point cloud resolution is suitable for estimating ecohydraulic parameters such as Manning's n and hydraulic radius. Although more work is needed to fine-tune our system's design, these preliminary results are encouraging, specifically for those with a limited operational budget.

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

PubMed Central

Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham; Wilhelm, Larry J.; Goodwin, Stephen B.; Berlin, Aaron M.; Figueroa, Melania; Freitag, Michael; Hane, James K.; Henrissat, Bernard; Holman, Wade H.; Kodira, Chinnappa D.; Martin, Joel; Oliver, Richard P.; Robbertse, Barbara; Schackwitz, Wendy; Schwartz, David C.; Spatafora, Joseph W.; Turgeon, B. Gillian; Yandava, Chandri; Young, Sarah; Zhou, Shiguo; Zeng, Qiandong; Grigoriev, Igor V.; Ma, Li-Jun; Ciuffetti, Lynda M.

2013-01-01

Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins (HST), which are recognized by their host in a genotype-specific manner. To better understand the mechanisms that have led to the increase in disease incidence related to this pathogen, we sequenced the genomes of three P. tritici-repentis isolates. A pathogenic isolate that produces two known HSTs was used to assemble a reference nuclear genome of approximately 40 Mb composed of 11 chromosomes that encode 12,141 predicted genes. Comparison of the reference genome with those of a pathogenic isolate that produces a third HST, and a nonpathogenic isolate, showed the nonpathogen genome to be more diverged than those of the two pathogens. Examination of gene-coding regions has provided candidate pathogen-specific proteins and revealed gene families that may play a role in a necrotrophic lifestyle. Analysis of transposable elements suggests that their presence in the genome of pathogenic isolates contributes to the creation of novel genes, effector diversification, possible horizontal gene transfer events, identified copy number variation, and the first example of transduplication by DNA transposable elements in fungi. Overall, comparative analysis of these genomes provides evidence that pathogenicity in this species arose through an influx of transposable elements, which created a genetically flexible landscape that can easily respond to environmental changes. PMID:23316438

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Manning, Viola A.; Pandelova, Iovanna; Dhillon, Braham

2012-08-16

Pyrenophora tritici-repentis is a necrotrophic fungus causal to the disease tan spot of wheat, whose contribution to crop loss has increased significantly during the last few decades. Pathogenicity by this fungus is attributed to the production of host-selective toxins (HST), which are recognized by their host in a genotype-specific manner. To better understand the mechanisms that have led to the increase in disease incidence related to this pathogen, we sequenced the genomes of three P. tritici-repentis isolates. A pathogenic isolate that produces two known HSTs was used to assemble a reference nuclear genome of approximately 40 Mb composed of 11more » chromosomes that encode 12,141 predicted genes. Comparison of the reference genome with those of a pathogenic isolate that produces a third HST, and a nonpathogenic isolate, showed the nonpathogen genome to be more diverged than those of the two pathogens. Examination of gene-coding regions has provided candidate pathogen-specific proteins and revealed gene families that may play a role in a necrotrophic lifestyle. Analysis of transposable elements suggests that their presence in the genome of pathogenic isolates contributes to the creation of novel genes, effector diversification, possible horizontal gene transfer events, identified copy number variation, and the first example of transduplication by DNA transposable elements in fungi. Overall, comparative analysis of these genomes provides evidence that pathogenicity in this species arose through an influx of transposable elements, which created a genetically flexible landscape that can easily respond to environmental changes.« less

Modeling of vibrations isolation and arrest by shape memory parts and permanent magnets

NASA Astrophysics Data System (ADS)

Belyaev, Fedor S.; Volkov, Aleksandr E.; Evard, Margarita E.; Vikulenkov, Andrey V.; Uspenskiy, Evgeniy S.

2018-05-01

A vibration protection system under consideration consists of a payload connected to a vibrating housing by shape memory alloy (SMA) slotted springs. To provide an arrest function two permanent magnets are inserted into the system. The slotted SMA elements are preliminary deformed in the martensitic state. Activation of one element by heating initiates force and displacement generation, which provide an arrest of the payload by magnets. The magnets also secure the arrest mode after cooling of the SMA element. Activation of the other element results in uncaging of the payload and switching to the vibration isolation mode. Computer simulations of arrest and uncaging when the housing is quiescent or producing sine-wave displacements were carried out. Functional-mechanical behavior of SMA parts was described by means of a microstructural model.

Predictions of Bedforms in Tidal Inlets and River Mouths

DTIC Science & Technology

2016-07-31

that community modeling environment. APPROACH Bedforms are ubiquitous in unconsolidated sediments . They act as roughness elements, altering the...flow and creating feedback between the bed and the flow and, in doing so, they are intimately tied to erosion, transport and deposition of sediments ...With this approach, grain-scale sediment transport is parameterized with simple rules to drive bedform-scale dynamics. Gallagher (2011) developed a

Red River of the North, Reconnaissance Report: Bois de Sioux-Mustinka Rivers Subbasin.

DTIC Science & Technology

1980-12-01

24 Climate . . . . . . . . . . . . . . . . . . . . 24 WaeorSy pp.................... 28 Water Supply . . .• 28 Cultural Elements . . . . 32...favored rough fish populations. Additionally, algal blooms and high turbidities have tended to limit habitat and spawning sites for game and pan fish...point where algal blooms occur in summer and early fall. Causative factors include (1) nutrients in runoff from surrounding farmlands; (2) run- off from

A computer program for the design and analysis of low-speed airfoils, supplement

NASA Technical Reports Server (NTRS)

Eppler, R.; Somers, D. M.

1980-01-01

Three new options were incorporated into an existing computer program for the design and analysis of low speed airfoils. These options permit the analysis of airfoils having variable chord (variable geometry), a boundary layer displacement iteration, and the analysis of the effect of single roughness elements. All three options are described in detail and are included in the FORTRAN IV computer program.

Hydrodynamic Noise from Flexible Roughness Elements

DTIC Science & Technology

2015-06-29

Virginia Tech (Dr. William Devenport and graduate student Ian Clark) continue to carry out experimental work to test the developed trailing-edge and...work to take into account dynamic motions of the fiber and finite distances between fibers for more realistic aeroacoustic models of its turbulence...pressure levels which result from introduction of the fabric covering. First, Fig. 5 plots the decibel reduction in the experimental surface pressure

Visible optical isolator using ZnSe

NASA Technical Reports Server (NTRS)

Wunderlich, J. A.; Deshazer, L. G.

1977-01-01

A compact Faraday effect optical isolator was constructed for visible wavelengths and tested at 5145 A. The nonreciprocal element of the isolator was polycrystalline zinc selenide placed in the magnetic field of a permanent magnet. For 5145 A the isolator had a 2.06-dB insertion loss and a 25.5-dB isolation. Indices of refraction and Verdet constants were measured for zinc selenide in the wavelength region from 4700 to 6300 A.

Is the Fungus Magnaporthe Losing DNA Methylation?

PubMed Central

Ikeda, Ken-ichi; Van Vu, Ba; Kadotani, Naoki; Tanaka, Masaki; Murata, Toshiki; Shiina, Kohta; Chuma, Izumi; Tosa, Yukio; Nakayashiki, Hitoshi

2013-01-01

The long terminal repeat retrotransposon, Magnaporthe gypsy-like element (MAGGY), has been shown to be targeted for cytosine methylation in a subset of Magnaporthe oryzae field isolates. Analysis of the F1 progeny from a genetic cross between methylation-proficient (Br48) and methylation-deficient (GFSI1-7-2) isolates revealed that methylation of the MAGGY element was governed by a single dominant gene. Positional cloning followed by gene disruption and complementation experiments revealed that the responsible gene was the DNA methyltransferase, MoDMT1, an ortholog of Neurospora crassa Dim-2. A survey of MAGGY methylation in 60 Magnaporthe field isolates revealed that 42 isolates from rice, common millet, wheat, finger millet, and buffelgrass were methylation proficient while 18 isolates from foxtail millet, green bristlegrass, Japanese panicgrass, torpedo grass, Guinea grass, and crabgrass were methylation deficient. Phenotypic analyses showed that MoDMT1 plays no major role in development and pathogenicity of the fungus. Quantitative polymerase chain reaction analysis showed that the average copy number of genomic MAGGY elements was not significantly different between methylation-deficient and -proficient field isolates even though the levels of MAGGY transcript were generally higher in the former group. MoDMT1 gene sequences in the methylation-deficient isolates suggested that at least three independent mutations were responsible for the loss of MoDMT1 function. Overall, our data suggest that MoDMT1 is not essential for the natural life cycle of the fungus and raise the possibility that the genus Magnaporthe may be losing the mechanism of DNA methylation on the evolutionary time scale. PMID:23979580

Molecular characterization of the short interspersed repetitive element SIRE in the six discrete typing units (DTUs) of Trypanosoma cruzi.

PubMed

Pavia, Paula X; Thomas, M Carmen; López, Manuel C; Puerta, Concepción J

2012-10-01

Repetitive sequences constitute an important proportion of the Trypanosoma cruzi genome; hence, they have been used as molecular markers and as amplification targets to identify the parasite presence via PCR. In this study, a molecular characterization of the SIRE repetitive element was performed in the six discrete typing units (DTUs) of T. cruzi. The results evidenced that this element, located in multiple chromosomes, was interspersed in the genome of all DTUs of the parasite. The presence of several motifs implicated in element insertion, duplication, and functionality suggests that SIRE could be an active element in the parasite genome. Of interest, there were SIRE specific Alu I fragments that allowed to discriminate DTU I from the others DTUs. Moreover, an UPGMA phenetic tree constructed from fragment sharing Southern blot data showed that T. cruzi I isolates conform a cluster separated from the T. cruzi II-VI isolates. When the relative number of SIRE copies was determined, a variation from 105 to 2,000 copies per haploid genome was observed among the different isolates without kept a DTU-relationship. In all, these findings suggest that SIRE sequence is a good target for parasite DNA amplification. Copyright © 2012 Elsevier Inc. All rights reserved.

Geomorphic evidence for ancient seas in west Deuteronilus Mensae, Mars-1: Regional geomorphology

NASA Technical Reports Server (NTRS)

Parker, Timothy J.; Schneeberger, Dale M.; Pieri, David C.; Saunders, R. Stephen

1987-01-01

The fretted terrain in west Deuteronilus Mensae consists of extensive cratered upland penninsulas or isolated plateaus cut by long, finger-like canyons typically 10 to 20 km wide and upwards of 300 km long. The longest of these canyons trend roughly north-south to north-northeast, which may reflect some local structural and/or topographic control. At least three geomorphic zones roughly parallel to the lowland/upland boundary, suggestive of increasing modification northward, can be recognized on the fretted region of the region. The southern-most zone (zone A) consists of sharply defined fretted terrain. The middle zone (zone B) consists of well defined fretted terrain in which the plateau surfaces appear smoother, with a somewhat darker and much less varied albedo surface than those of zone A. The northern-most zone (zone C) consists of rounded or softened fretted terrain. The zones were interpreted as surface exposures of successively lower stratigraphic units.

Identity and Behavior of Xylem-Residing Bacteria in Rough Lemon Roots of Florida Citrus Trees †

PubMed Central

Gardner, John M.; Feldman, Albert W.; Zablotowicz, Robert M.

1982-01-01

An aseptic vacuum extraction technique was used to obtain xylem fluid from the roots of rough lemon (Citrus jambhiri Lush.) rootstock of Florida citrus trees. Bacteria were consistently isolated from vascular fluid of both healthy and young tree decline-affected trees. Thirteen genera of bacteria were found, the most frequently occurring genera being Pseudomonas (40%), Enterobacter (18%), Bacillus, Corynebacterium, and other gram-positive bacteria (16%), and Serratia (6%). Xylem bacterial counts fluctuated seasonally. Bacterial populations ranged from 0.1 to 22 per mm3 of root tissue (about 102 to 2 × 104 bacteria per g of xylem) when bacterial counts were made on vascular fluid, but these numbers were 10- to 1,000-fold greater when aseptically homogenized xylem tissue was examined similarly. Some of the resident bacteria (4%) are potentially phytopathogenic. It is proposed that xylem bacteria have an important role in the physiology of citrus. PMID:16346030

Rupture preparation process controlled by surface roughness on meter-scale laboratory fault

NASA Astrophysics Data System (ADS)

Yamashita, Futoshi; Fukuyama, Eiichi; Xu, Shiqing; Mizoguchi, Kazuo; Kawakata, Hironori; Takizawa, Shigeru

2018-05-01

We investigate the effect of fault surface roughness on rupture preparation characteristics using meter-scale metagabbro specimens. We repeatedly conducted the experiments with the same pair of rock specimens to make the fault surface rough. We obtained three experimental results under the same experimental conditions (6.7 MPa of normal stress and 0.01 mm/s of loading rate) but at different roughness conditions (smooth, moderately roughened, and heavily roughened). During each experiment, we observed many stick-slip events preceded by precursory slow slip. We investigated when and where slow slip initiated by using the strain gauge data processed by the Kalman filter algorithm. The observed rupture preparation processes on the smooth fault (i.e. the first experiment among the three) showed high repeatability of the spatiotemporal distributions of slow slip initiation. Local stress measurements revealed that slow slip initiated around the region where the ratio of shear to normal stress (τ/σ) was the highest as expected from finite element method (FEM) modeling. However, the exact location of slow slip initiation was where τ/σ became locally minimum, probably due to the frictional heterogeneity. In the experiment on the moderately roughened fault, some irregular events were observed, though the basic characteristics of other regular events were similar to those on the smooth fault. Local stress data revealed that the spatiotemporal characteristics of slow slip initiation and the resulting τ/σ drop for irregular events were different from those for regular ones even under similar stress conditions. On the heavily roughened fault, the location of slow slip initiation was not consistent with τ/σ anymore because of the highly heterogeneous static friction on the fault, which also decreased the repeatability of spatiotemporal distributions of slow slip initiation. These results suggest that fault surface roughness strongly controls the rupture preparation process, and generally increases its complexity with the degree of roughness.

Rapid Peptide Reagent Isolation in a Disposable Microfluidic Cartridge

DTIC Science & Technology

2010-09-01

Rapid Peptide Reagent Isolation in a Disposable Microfluidic Cartridge by Dimitra N. Stratis-Cullum, Joshua M. Kogot, and Paul M...Adelphi, MD 20783-1197 ARL-TR-5357 September 2010 Rapid Peptide Reagent Isolation in a Disposable Microfluidic Cartridge Dimitra N...Peptide Reagent Isolation in a Disposable Microfluidic Cartridge 5a. CONTRACT NUMBER DAAD19-03-D-004 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER

Hydraulically controlled discrete sampling from open boreholes

USGS Publications Warehouse

Harte, Philip T.

2013-01-01

Groundwater sampling from open boreholes in fractured-rock aquifers is particularly challenging because of mixing and dilution of fluid within the borehole from multiple fractures. This note presents an alternative to traditional sampling in open boreholes with packer assemblies. The alternative system called ZONFLO (zonal flow) is based on hydraulic control of borehole flow conditions. Fluid from discrete fractures zones are hydraulically isolated allowing for the collection of representative samples. In rough-faced open boreholes and formations with less competent rock, hydraulic containment may offer an attractive alternative to physical containment with packers. Preliminary test results indicate a discrete zone can be effectively hydraulically isolated from other zones within a borehole for the purpose of groundwater sampling using this new method.

Potential of bacteria isolated from landfill soil in degrading low density polyethylene plastic

NASA Astrophysics Data System (ADS)

Munir, E.; Sipayung, F. C.; Priyani, N.; Suryanto, D.

2018-03-01

Plastic is an important material and used for many purposes. It is returned to the environment as a waste which is recently considered as the second largest solid waste. The persistency of plastic in the environment has been attracted researchers from a different point of view. The study of the degradation of plastic using bacteria isolated from local landfill soil was conducted. Low density polyethylene (LDPE) plastic was used as tested material. Potential isolates were obtained by culturing the candidates in mineral salt medium broth containing LDPE powder. Two of ten exhibited better growth response in the selection media and were used in degradation study. Results showed that isolate SP2 and SP4 reduced the weight of LDPE film significantly to a weight loss of 10.16% and 12.06%, respectively after four weeks of incubation. Scanning electron micrograph analyses showed the surface of LDPE changed compared to the untreated film. It looked rough and cracked, and bacteria cells attached to the surface was also noticed. Fourier transform infrared spectroscopy analyses confirmed the degradation of LDPE film. These results indicated that bacteria isolated from landfill might play an important role in degrading plastic material in the landfill.

[Occurrence of AmpC-positive Klebsiella pneumoniae strains in patients with haematological malignancies].

PubMed

Chromá, Magdaléna; Kolár, Milan; Sauer, Pavel; Faber, Edgar; Stosová, Tatána; Koukalová, Dagmar; Indrák, Karel

2008-10-01

Currently, important bacterial beta-lactamases of increasing clinical significance include AmpC enzymes. The aim was to assess their occurrence in Klebsiella pneumoniae strains isolated from patients with haematological malignancies in a prospective study. Over a 2-month period, strains of the species were isolated from clinical material obtained from patients hospitalized at the Department of Haemato-Oncology of the University Hospital Olomouc. The strains were identified using standard microbiological techniques and the Vitek 2 automated system. Production of AmpC beta-lactamases was roughly determined by phenotypic tests and subsequently confirmed by PCR detection of genes encoding these enzymes. During the above-mentioned period, a total of 35 K. pneumoniae isolates were collected. In 7 of them, production of AmpC beta-lactamases was preliminarily detected by phenotypic test. The multiplex PCR method confirmed phenotyping and determined DHA types in all the isolates. All AmpC-positive isolates were false-susceptible to at least one of the tested third-generation cephalosporins. In one patient, clinically apparent infection caused by this strain was documented. The reported results suggest the possibility of occurrence of AmpC-beta-lactamases in K. pneumoniae strains with clinical significance.

Identification and characterization of novel natural pathogen of Drosophila melanogaster isolated from wild captured Drosophila spp.

PubMed

Singh, Karan; Zulkifli, Mohammad; Prasad, N G

2016-12-01

Drosophila melanogaster is an emerging model system for the study of evolutionary ecology of immunity. However, a large number of studies have used non natural pathogens as very few natural pathogens have been isolated and identified. Our aim was to isolate and characterize natural pathogen/s of D. melanogaster. A bacterial pathogen was isolated from wild caught Drosophila spp., identified as a new strain of Staphylococcus succinus subsp. succinus and named PK-1. This strain induced substantial mortality (36-62%) in adults of several laboratory populations of D. melanogaster. PK-1 grew rapidly within the body of the flies post infection and both males and females had roughly same number of colony forming units. Mortality was affected by mode of infection and dosage of the pathogen. However mating status of the host had no effect on mortality post infection. Given that there are very few known natural bacterial pathogens of D. melanogaster and that PK-1 can establish a sustained infection across various outbred and inbred populations of D. melanogaster this new isolate is a potential resource for future studies on immunity. Copyright © 2016 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Novel Structure of Enterococcus faecium-Originated ermB-Positive Tn1546-Like Element in Staphylococcus aureus.

PubMed

Wan, Tsai-Wen; Hung, Wei-Chun; Tsai, Jui-Chang; Lin, Yu-Tzu; Lee, Hao; Hsueh, Po-Ren; Lee, Tai-Fen; Teng, Lee-Jene

2016-10-01

We determined the resistance determinants in 274 erythromycin-resistant methicillin-susceptible Staphylococcus aureus (MSSA) isolates during a 13-year period, 2000 to 2012. The resistance phenotypes, inducible macrolide-lincosamide-streptogramin (iMLS), constitutive MLS (cMLS), and macrolide-streptogramin (MS) resistance phenotypes, were examined by a double-disk diffusion D test. The ermB gene was more frequent (35%; 97/274) than ermC (27%; 75/274) or ermA (21%; 58/274). All 97 ermB-positive isolates harbored Tn551 and IS1216V The majority (89/97) of ermB-positive isolates displayed the cMLS phenotype and carried mobile element structure (MES)-like structures, which has been previously reported in sequence type 59 (ST59) methicillin-resistant S. aureus (MRSA). The remaining 8 ermB-carrying isolates, belonging to ST7 (n = 4), ST5 (n = 3), and ST59 (n = 1), were sasK intact and did not carry MES-like structures. Unlike a MES-like structure that was located on the chromosome, the ermB elements on sasK-intact isolates were located on plasmids by S1 nuclease pulsed-field gel electrophoresis (PFGE) analysis and conjugation tests. Sequence data for the ermB-containing region (14,566 bp) from ST59 NTUH_3874 revealed that the best match was a Tn1546-like element in plasmid pMCCL2 DNA (GenBank accession number AP009486) of Macrococcus caseolyticus Tn1546 is recognized as an enterococcal transposon and was known from the vancomycin resistance gene cluster in vancomycin-resistant Enterococcus (VRE). So far, acquisitions of Tn1546 in S. aureus have occurred in clonal complex 5 (CC5) MRSA, but not in MSSA. This is the first report that MSSA harbors an Enterococcus faecium-originated ermB-positive Tn1546-like element located on a plasmid. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Multiple scattering in the remote sensing of natural surfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Wen-Hao; Weeks, R.; Gillespie, A.R.

1996-07-01

Radiosity models predict the amount of light scattered many times (multiple scattering) among scene elements in addition to light interacting with a surface only once (direct reflectance). Such models are little used in remote sensing studies because they require accurate digital terrain models and, typically, large amounts of computer time. We have developed a practical radiosity model that runs relatively quickly within suitable accuracy limits, and have used it to explore problems caused by multiple-scattering in image calibration, terrain correction, and surface roughness estimation for optical images. We applied the radiosity model to real topographic surfaces sampled at two verymore » different spatial scales: 30 m (rugged mountains) and 1 cm (cobbles and gravel on an alluvial fan). The magnitude of the multiple-scattering (MS) effect varies with solar illumination geometry, surface reflectivity, sky illumination and surface roughness. At the coarse scale, for typical illumination geometries, as much as 20% of the image can be significantly affected (>5%) by MS, which can account for as much as {approximately}10% of the radiance from sunlit slopes, and much more for shadowed slopes, otherwise illuminated only by skylight. At the fine scale, radiance from as much as 30-40% of the scene can have a significant MS component, and the MS contribution is locally as high as {approximately}70%, although integrating to the meter scale reduces this limit to {approximately}10%. Because the amount of MS increases with reflectivity as well as roughness, MS effects will distort the shape of reflectance spectra as well as changing their overall amplitude. The change is proportional to surface roughness. Our results have significant implications for determining reflectivity and surface roughness in remote sensing.« less

A non-autonomous insect piggyBac trasposable element is mobile in tobacco

USDA-ARS?s Scientific Manuscript database

The piggyBac transposable element, originally isolated from a virus in an insect cell line, is a valuable molecular tool for transgenesis and mutagenesis of invertebrates. For heterologous transgenesis in a variety of mammals, transfer of the piggyBac transposable element from an ectopic plasmid onl...

National Mapping of Wetland Connectivity

EPA Science Inventory

Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrolo...

Draft genome sequences of 64 swine associated LA-MRSA ST5 isolates from the USA

USDA-ARS?s Scientific Manuscript database

Methicillin resistant Staphylococcus aureus colonizes humans and other animals such as swine. LA-MRSA sequence type (ST) 5 isolates are a public concern due to their pathogenicity and ability to acquire mobile genetic elements. This report presents draft genome sequences for 64 LA-MRSA ST5 isolates ...

Novice Head Teachers' Isolation and Loneliness Experiences: A Mixed-Methods Study

ERIC Educational Resources Information Center

Tahir, Lokman; Thakib, Mohd Taufiq Mohd; Hamzah, Mohd Hilmi; Said, Mohd Nihra Haruzuan Mohd; Musah, Mohammed Borhandden

2017-01-01

Most studies in headship focus on the elements of training and head teachers' capabilities in leading schools. The concept of isolation experienced by head teachers during the early years of their headship is, however, overlooked. This article attempts to explore the neglected aspect of headships' experiences with isolation that later contributes…

Short interspersed elements (SINEs) of the Geomyoidea superfamily rodents.

PubMed

Gogolevsky, Konstantin P; Kramerov, Dmitri A

2006-05-24

A new short interspersed element (SINE) was isolated from the genome of desert kangaroo rat (Dipodomys deserti) using single-primer PCR. This SINE consists of two monomers: the left monomer (IDL) resembles rodent ID element and other tRNAAla(CGC)-derived SINEs, whereas the right one (Geo) shows no similarity with known SINE sequences. PCR and hybridization analyses demonstrated that IDL-Geo SINE is restricted to the rodent superfamily Geomyoidea (families Geomyidea and Heteromyidea). Isolation and analysis of IDL-Geo from California pocket mouse (Chaetodipus californicus) and Botta's pocket gopher (Thomomys bottae) revealed some species-specific features of this SINE family. The structure and evolution of known dimeric SINEs are discussed.

Distribution of Diverse Escherichia coli between Cattle and Pasture.

PubMed

NandaKafle, Gitanjali; Seale, Tarren; Flint, Toby; Nepal, Madhav; Venter, Stephanus N; Brözel, Volker S

2017-09-27

Escherichia coli is widely considered to not survive for extended periods outside the intestines of warm-blooded animals; however, recent studies demonstrated that E. coli strains maintain populations in soil and water without any known fecal contamination. The objective of this study was to investigate whether the niche partitioning of E. coli occurs between cattle and their pasture. We attempted to clarify whether E. coli from bovine feces differs phenotypically and genotypically from isolates maintaining a population in pasture soil over winter. Soil, bovine fecal, and run-off samples were collected before and after the introduction of cattle to the pasture. Isolates (363) were genotyped by uidA and mutS sequences and phylogrouping, and evaluated for curli formation (Rough, Dry, And Red, or RDAR). Three types of clusters emerged, viz. bovine-associated, clusters devoid of cattle isolates and representing isolates endemic to the pasture environment, and clusters with both. All isolates clustered with strains of E. coli sensu stricto, distinct from the cryptic species Clades I, III, IV, and V. Pasture soil endemic and bovine fecal populations had very different phylogroup distributions, indicating niche partitioning. The soil endemic population was largely comprised of phylogroup B1 and had a higher average RDAR score than other isolates. These results indicate the existence of environmental E. coli strains that are phylogenetically distinct from bovine fecal isolates, and that have the ability to maintain populations in the soil environment.

Low cost friction seismic base-isolation of residential new masonry buildings in developing countries: A small masonry house case study

NASA Astrophysics Data System (ADS)

Habieb, A. B.; Milani, G.; Tavio, T.; Milani, F.

2017-07-01

A Finite element model was established to examine performance of a low-cost friction base-isolation system in reducing seismic vulnerability of rural buildings. This study adopts an experimental investigation of the isolation system which was conducted in India. Four friction isolation interfaces, namely, marble-marble, marble-high-density polyethylene, marble-rubber sheet, and marble-geosynthetic were involved. Those interfaces differ in static and dynamic friction coefficient obtained through previous research. The FE model was performed based on a macroscopic approach and the masonry wall is assumed as an isotropic element. In order to observe structural response of the masonry house, elastic and plastic parameters of the brick wall were studied. Concrete damage plasticity (CDP) model was adopted to determine non-linear behavior of the brick wall. The results of FE model shows that involving these friction isolation systems could much decrease response acceleration at roof level. It was found that systems with marble-marble and marble-geosynthetic interfaces reduce the roof acceleration up to 50% comparing to the system without isolation. Another interesting result is there was no damage appearing in systems with friction isolation during the test. Meanwhile a severe failure was clearly visible for a system without isolation.

Attempt at forming an expression of Manning's 'n' for Open Channel Flow

NASA Astrophysics Data System (ADS)

De, S. K.; Khosa, R.

2016-12-01

Study of open channel hydraulics finds application in diverse areas such as design of river banks, bridges and other structures. Principal hydraulic elements used in these applications include surface water profiles and flow velocity and these carry significant influences of fluid properties, channel properties and boundary conditions. As per current practice, friction influences are routinely captured in a single factor and commonly referred to as the roughness coefficient and amongst the most widely used equation of flow that uses the latter coefficient is the Manning's equation. As of now, selection of the Manning's roughness coefficient is made from existing tabulated data and accompanying pictures and, clearly as per these practices, the selection and choice of this coefficient is inevitably very subjective and a source of uncertainty in the application of transport models. In this study, an attempt has been made to develop a more rational and computationally feasible expression of the Manning's constant 'n' so that it partially or fully eliminates the need to refer to a table whenever performing a computation. The development of an equation of the Manning's constant uses the basic parameters of the flow and also consideration for influences such as vegetation and form roughness as well.

Evaluation of Solar Air Heater Performance with Artificial Rib Roughness over the Absorber Plate using Finite Element Modelling Analysis

NASA Astrophysics Data System (ADS)

Kumar, K. Ravi; Nikhil Varma, P.; Jagadeesh, N.; Sandeep, J. V.; Cheepu, Muralimohan; Venkateswarlu, D.; Srinivas, B.

2018-03-01

Among the different renewable energy resources, solar energy is widely used due to its quantitative intensity factor. Solar air heater is cheap, simple in design and has got wide range of applications. A modest solar air heater has a lower in heat transfer and thermal performance as it has heat transfer coefficient lower in between coated absorber plate and the carrier fluid. This low thermal performance can be reduced to a greater extent by introducing the artificially created roughness over the absorber plate of the solar heater. In the present study, the combination of various geometries and roughness’s on the absorber plate are reported. Methods have been developed and implemented in order to improve the rate of the heat transfer. A comparison is drawn among different geometries to select the most effective absorber plate roughness. For flow analysis k-ω SST model was used and the constant heat flux was taken as 1100 W/m2. The Reynolds number is varied in a range from 3000 to 20000. The variation of different parameters temperature, Nusselt number, turbulence kinetic energy and heat transfer coefficient with Reynolds number were examined and discussed.

ICESpy009, a Conjugative Genetic Element Carrying mef(E) in Streptococcus pyogenes.

PubMed

Del Grosso, Maria; Camilli, Romina; Rizzi, Ermanno; Pietrelli, Alessandro; De Bellis, Gianluca; Pantosti, Annalisa

2016-07-01

Efflux-mediated macrolide resistance due to mef(E) and mel, carried by the mega element, is common in Streptococcus pneumoniae, for which it was originally characterized, but it is rare in Streptococcus pyogenes In S. pyogenes, mega was previously found to be enclosed in Tn2009, a composite genetic element of the Tn916 family containing tet(M) and conferring erythromycin and tetracycline resistance. In this study, S. pyogenes isolates containing mef(E), apparently not associated with other resistance determinants, were examined to characterize the genetic context of mega. By whole-genome sequencing of one isolate, MB56Spyo009, we identified a novel composite integrative and conjugative element (ICE) carrying mega, designated ICESpy009, belonging to the ICESa2603 family. ICESpy009 was 55 kb long, contained 61 putative open reading frames (ORFs), and was found to be integrated into hylA, a novel integration site for the ICESa2603 family. The modular organization of the ICE was similar to that of members of the ICESa2603 family carried by different streptococcal species. In addition, a novel cluster of accessory resistance genes was found inside a region that encloses mega. PCR mapping targeting ICESpy009 revealed the presence of a similar ICE in five other isolates under study. While in three isolates the integration site was the same as that of ICESpy009, in two isolates the ICE was integrated into rplL, the typical integration site of the ICESa2603 family. ICESpy009 was able to transfer macrolide resistance by conjugation to both S. pyogenes and S. pneumoniae, showing the first evidence of the transferability of mega from S. pyogenes. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

ICESpy009, a Conjugative Genetic Element Carrying mef(E) in Streptococcus pyogenes

PubMed Central

Camilli, Romina; Rizzi, Ermanno; Pietrelli, Alessandro; De Bellis, Gianluca; Pantosti, Annalisa

2016-01-01

Efflux-mediated macrolide resistance due to mef(E) and mel, carried by the mega element, is common in Streptococcus pneumoniae, for which it was originally characterized, but it is rare in Streptococcus pyogenes. In S. pyogenes, mega was previously found to be enclosed in Tn2009, a composite genetic element of the Tn916 family containing tet(M) and conferring erythromycin and tetracycline resistance. In this study, S. pyogenes isolates containing mef(E), apparently not associated with other resistance determinants, were examined to characterize the genetic context of mega. By whole-genome sequencing of one isolate, MB56Spyo009, we identified a novel composite integrative and conjugative element (ICE) carrying mega, designated ICESpy009, belonging to the ICESa2603 family. ICESpy009 was 55 kb long, contained 61 putative open reading frames (ORFs), and was found to be integrated into hylA, a novel integration site for the ICESa2603 family. The modular organization of the ICE was similar to that of members of the ICESa2603 family carried by different streptococcal species. In addition, a novel cluster of accessory resistance genes was found inside a region that encloses mega. PCR mapping targeting ICESpy009 revealed the presence of a similar ICE in five other isolates under study. While in three isolates the integration site was the same as that of ICESpy009, in two isolates the ICE was integrated into rplL, the typical integration site of the ICESa2603 family. ICESpy009 was able to transfer macrolide resistance by conjugation to both S. pyogenes and S. pneumoniae, showing the first evidence of the transferability of mega from S. pyogenes. PMID:27067338

Breast Cancer Research at NASA

NASA Technical Reports Server (NTRS)

1998-01-01

Isolation of human mammary epithelial cells (HMEC) from breast cancer susceptible tissue; A: Duct element recovered from breast tissue digest. B: Outgrowth of cells from duct element in upper right corner cultured in a standard dish; most cells spontaneousely die during early cell divisions, but a few will establish long-term growth. C: Isolate of long-term frowth HMEC from outgrowth of duct element; cells shown soon after isolation and in early full-cell contact growth in culture in a dish. D: same long-term growth HMEC, but after 3 weeks in late full-cell contact growth in a continuous culture in a dish. Note attempts to reform duct elements but this in two demensions in a dish rather than in three dimensions in tissue. NASA's Marshall Space Flight Center (MSFC) is sponsoring research with Bioreactors, rotating wall vessels designed to grow tissue samples in space, to understand how breast cancer works. This ground-based work studies the growth and assembly of human mammary epithelial cell (HMEC) from breast cancer susceptible tissue. Radiation can make the cells cancerous, thus allowing better comparisons of healthy vs. tunorous tissue. Credit: Dr. Robert Richmond, NASA/Marshall Space Flight Center (MSFC).

The Eleventh Quadrennial Review of Military Compensation. Main Report

DTIC Science & Technology

2012-06-01

Banks are reluctant to lend money and home equities have plunged roughly 30 percent from the market peak in 2007. The unemployment rate, at 8.1...Introduction Figure 1-1. High-quality Enlistments versus Unemployment Chapter 2. Military Compensation Figure 2-1. Major Components of Military...compensation with the private sector —an understanding of which serves as a useful foundation for examining specific elements of the compensation system

Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution

PubMed Central

2012-01-01

Background Staphylococcus aureus Repeat (STAR) elements are a type of interspersed intergenic direct repeat. In this study the conservation and variation in these elements was explored by bioinformatic analyses of published staphylococcal genome sequences and through sequencing of specific STAR element loci from a large set of S. aureus isolates. Results Using bioinformatic analyses, we found that the STAR elements were located in different genomic loci within each staphylococcal species. There was no correlation between the number of STAR elements in each genome and the evolutionary relatedness of staphylococcal species, however higher levels of repeats were observed in both S. aureus and S. lugdunensis compared to other staphylococcal species. Unexpectedly, sequencing of the internal spacer sequences of individual repeat elements from multiple isolates showed conservation at the sequence level within deep evolutionary lineages of S. aureus. Whilst individual STAR element loci were demonstrated to expand and contract, the sequences associated with each locus were stable and distinct from one another. Conclusions The high degree of lineage and locus-specific conservation of these intergenic repeat regions suggests that STAR elements are maintained due to selective or molecular forces with some of these elements having an important role in cell physiology. The high prevalence in two of the more virulent staphylococcal species is indicative of a potential role for STAR elements in pathogenesis. PMID:23020678

Experimental and Numerical Study of the Influence of Substrate Surface Preparation on Adhesion Mechanisms of Aluminum Cold Spray Coatings on 300M Steel Substrates

NASA Astrophysics Data System (ADS)

Nastic, A.; Vijay, M.; Tieu, A.; Rahmati, S.; Jodoin, B.

2017-10-01

The effect of substrate surface topography on the creation of metallurgical bonds and mechanical anchoring points has been studied for the cold spray deposition of pure aluminum on 300M steel substrate material. The coatings adhesion strength showed a significant decrease from 31.0 ± 5.7 MPa on polished substrates to 6.9 ± 2.0 MPa for substrates with roughness of 2.2 ± 0.5 μm. Strengths in the vicinity of 45 MPa were reached for coatings deposited onto forced pulsed waterjet treated surfaces with roughnesses larger than 33.8 μm. Finite element analysis has confirmed the sole presence of mechanical anchoring in coating adhesion strength for all surface treatment except polished surfaces. Grit embedment has been shown to be non-detrimental to coating adhesion for the current deposited material combination. The particle deformation process during impacts has been studied through finite element analysis using the Preston-Tonks-Wallace (PTW) constitutive model. The obtained equivalent plastic strain (PEEQ), temperature, contact pressure and velocity vector were correlated to the particle ability to form metallurgical bonds. Favorable conditions for metallurgical bonding were found to be highest for particles deposited on polished substrates, as confirmed by fracture surface analysis.

Food poisoning outbreak in Tokyo, Japan caused by Staphylococcus argenteus.

PubMed

Suzuki, Yasunori; Kubota, Hiroaki; Ono, Hisaya K; Kobayashi, Makiko; Murauchi, Konomi; Kato, Rei; Hirai, Akihiko; Sadamasu, Kenji

2017-12-04

Staphylococcus argenteus is a novel species subdivided from Staphylococcus aureus. Whether this species can cause food poisoning outbreaks is unknown. This study aimed to investigate the enterotoxigenic activities of two food poisoning isolates suspected to be S. argenteus (Tokyo13064 and Tokyo13069). The results for phylogenic trees, constructed via whole genome sequencing, demonstrated that both isolates were more similar to a type strain of S. argenteus (MSHR1132) than any S. aureus strain. Moreover, the representative characteristics of S. argenteus were present in both strains, namely both isolates belong to the CC75 lineage and both lack a crtOPQMN operon. Thus, both were determined to be "S. argenteus." The compositions of the two isolates' accessory elements differed from those of MSHR1132. For example, the seb-related Staphylococcus aureus pathogenicity island, SaPIishikawa11, was detected in Tokyo13064 and Tokyo13069 but not in MSHR1132. Both isolates were suggested to belong to distinct lineages that branched off from MSHR1132 lineages in terms of accessory elements. Tokyo13064 and Tokyo13069 expressed high levels of s(arg)eb and produced S(arg)EB protein, indicating that both have the ability to cause food poisoning. Our findings suggest that S. argenteus harboring particular accessory elements can cause staphylococcal diseases such as food poisoning, similarly to S. aureus. Copyright © 2017 Elsevier B.V. All rights reserved.

Distribution of the ACME-arcA gene among meticillin-resistant Staphylococcus haemolyticus and identification of a novel ccr allotype in ACME-arcA-positive isolates.

PubMed

Pi, Borui; Yu, Meihong; Chen, Yagang; Yu, Yunsong; Li, Lanjuan

2009-06-01

The aim of this study was to investigate the prevalence and characteristics of ACME (arginine catabolic mobile element)-arcA-positive isolates among meticillin-resistant Staphylococcus haemolyticus (MRSH). ACME-arcA, native arcA and SCCmec elements were detected by PCR. Susceptibilities to 10 antimicrobial agents were compared between ACME-arcA-positive and -negative isolates by chi-square test. PFGE was used to investigate the clonal relatedness of ACME-arcA-positive isolates. The phylogenetic relationships of ACME-arcA and native arcA were analysed using the neighbour-joining methods of mega software. A total of 42 (47.7 %) of 88 isolates distributed in 13 PFGE types were positive for the ACME-arcA gene. There were no significant differences in antimicrobial susceptibility between ACME-arcA-positive and -negative isolates. A novel ccr allotype (ccrAB(SHP)) was identified in ACME-arcA-positive isolates. Among 42 ACME-arcA-positive isolates: 8 isolates harboured SCCmec V, 8 isolates harboured class C1 mec complex and ccrAB(SHP); 22 isolates harbouring class C1 mec complex and 4 isolates harbouring class C2 mec complex were negative for all known ccr allotypes. The ACME-arcA-positive isolates were first found in MRSH with high prevalence and clonal diversity, which suggests a mobility of ACME within MRSH. The results from this study revealed that MRSH is likely to be one of the potential reservoirs of ACME for Staphylococcus aureus.

Impact of the proposed I-326 crossing on the 500-year flood stages of the Congaree River near Columbia, South Carolina

USGS Publications Warehouse

Bennett, C.S.

1984-01-01

A two-dimensional finite-element surface water flow modeling system based on the shallow water equations was used to study the hydraulic impact of the proposed Interstate crossing on the 500-year flood. Infrared aerial photography was used to define regions of homogeneous roughness in the flood plain. Finite-element networks approximating flood plain topography were designed using elements of three roughness types. High water marks established during an 8-year flood that occurred in October 1976 were used to calibrate the model. The 500-year flood (630,000 cu ft/sec) was simulated using the dike on the left bank as the left boundary and the right edge of the flood plain as the right boundary. Simulations were performed without and with the proposed highway embankments in place. Detailed information was obtained about backwater effects upstream from the proposed highway embankments, changes in flow distribution resulting from embankments, and velocities in the vicinity of the bridge openings. The results of the study indicate that the four bridge openings in the right flood plain should be adequate to handle the 500-yr flood flow. Forty percent of the flow passes through the main channel bridge, while the remaining 60% of the flow passes through the three overflow bridges. Average velocities in the bridge openings ranged from 3.4 ft/sec to 6.9 ft/sec with a maximum vertically averaged velocity of 9.3 ft/sec occurring at the right edge of one of the overflow bridges. (Author 's abstract)

High stability amplifier

NASA Technical Reports Server (NTRS)

Adams, W. A.; Reinhardt, V. S. (Inventor)

1983-01-01

An electrical RF signal amplifier for providing high temperature stability and RF isolation and comprised of an integrated circuit voltage regulator, a single transistor, and an integrated circuit operational amplifier mounted on a circuit board such that passive circuit elements are located on side of the circuit board while the active circuit elements are located on the other side is described. The active circuit elements are embedded in a common heat sink so that a common temperature reference is provided for changes in ambient temperature. The single transistor and operational amplifier are connected together to form a feedback amplifier powered from the voltage regulator with transistor implementing primarily the desired signal gain while the operational amplifier implements signal isolation. Further RF isolation is provided by the voltage regulator which inhibits cross-talk from other like amplifiers powered from a common power supply. Input and output terminals consisting of coaxial connectors are located on the sides of a housing in which all the circuit components and heat sink are located.

Regional Dissemination of a Trimethoprim-Resistance Gene Cassette via a Successful Transposable Element

PubMed Central

Opintan, Japheth A.; Bishar, Rima A.; Aboderin, A. Oladipo; Newman, Mercy J.; Lamikanra, Adebayo; Okeke, Iruka N.

2012-01-01

Background Antimicrobial resistance is a growing international problem. We observed a 50% increase in the prevalence of trimethoprim resistance among fecal Escherichia coli from healthy Nigerian students between 1998 and 2005, a trend to increase that continued in 2009. Methods and Findings A PCR-based screen revealed that 131 (43.1%) of isolates obtained in Nigeria in 2005 and 2009 carried integron-borne dfrA cassettes. In the case of 67 (51.1%) of these isolates, the cassette was a class 1-integron-borne dfrA7 gene, which has been reported at high prevalence from E. coli isolates from other parts of Africa. Complete sequencing of a 27 Kb dfrA7-bearing plasmid from one isolate located the dfrA7 gene within a Tn21-type transposon. The transposon also contained an IS26-derived bla/sul/str element, encoding resistance to β-lactams, sulphonamides and streptomycin, and mercury resistance genes. Although the plasmid backbone was only found in 12 (5.8%) of trimethoprim-resistant isolates, dfrA7 and other transposon-borne genes were detected in 14 (16.3%) and 32 (26.3%) of trimethoprim resistant isolates collected in Nigeria in 2005 and 2009, respectively. Additionally, 37 (19.3%) of trimethoprim-resistant E. coli isolates collected between 2006 and 2008 from Ghana were positive for the dfrA7 and a transposon marker, but only 4 (2.1%) harbored the plasmid backbone. Conclusions Our data point to transposition as a principal mechanism for disseminating dfrA7 among E. coli from Nigeria and Ghana. On-going intensive use of the affordable broad-spectrum antibacterials is likely to promote selective success of a highly prevalent transposable element in West Africa. PMID:22666464

Incidence and Characterization of Integrons, Genetic Elements Mediating Multiple-Drug Resistance, in Avian Escherichia coli

PubMed Central

Bass, Lydia; Liebert, Cynthia A.; Lee, Margie D.; Summers, Anne O.; White, David G.; Thayer, Stephan G.; Maurer, John J.

1999-01-01

Antibiotic resistance among avian bacterial isolates is common and is of great concern to the poultry industry. Approximately 36% (n = 100) of avian, pathogenic Escherichia coli isolates obtained from diseased poultry exhibited multiple-antibiotic resistance to tetracycline, oxytetracycline, streptomycin, sulfonamides, and gentamicin. Clinical avian E. coli isolates were further screened for the presence of markers for class 1 integrons, the integron recombinase intI1 and the quaternary ammonium resistance gene qacEΔ1, in order to determine the contribution of integrons to the observed multiple-antibiotic resistance phenotypes. Sixty-three percent of the clinical isolates were positive for the class 1 integron markers intI1 and qacEΔ1. PCR analysis with the conserved class 1 integron primers yielded amplicons of approximately 1 kb from E. coli isolates positive for intI1 and qacEΔ1. These PCR amplicons contained the spectinomycin-streptomycin resistance gene aadA1. Further characterization of the identified integrons revealed that many were part of the transposon Tn21, a genetic element that encodes both antibiotic resistance and heavy-metal resistance to mercuric compounds. Fifty percent of the clinical isolates positive for the integron marker gene intI1 as well as for the qacEΔ1 and aadA1 cassettes also contained the mercury reductase gene merA. The correlation between the presence of the merA gene with that of the integrase and antibiotic resistance genes suggests that these integrons are located in Tn21. The presence of these elements among avian E. coli isolates of diverse genetic makeup as well as in Salmonella suggests the mobility of Tn21 among pathogens in humans as well as poultry. PMID:10582884

Differential Regulation of Native Estrogen Receptor-Regulatory Elements by Estradiol, Tamoxifen, and Raloxifene

PubMed Central

Levy, Nitzan; Tatomer, Dierdre; Herber, Candice B.; Zhao, Xiaoyue; Tang, Hui; Sargeant, Toby; Ball, Lonnele J.; Summers, Jonathan; Speed, Terence P.; Leitman, Dale C.

2008-01-01

Estrogen receptors (ERs) regulate gene transcription by interacting with regulatory elements. Most information regarding how ER activates genes has come from studies using a small set of target genes or simple consensus sequences such as estrogen response element, activator protein 1, and Sp1 elements. However, these elements cannot explain the differences in gene regulation patterns and clinical effects observed with estradiol (E2) and selective estrogen receptor modulators. To obtain a greater understanding of how E2 and selective estrogen receptor modulators differentially regulate genes, it is necessary to investigate their action on a more comprehensive set of native regulatory elements derived from ER target genes. Here we used chromatin immunoprecipitation-cloning and sequencing to isolate 173 regulatory elements associated with ERα. Most elements were found in the introns (38%) and regions greater than 10 kb upstream of the transcription initiation site (38%); 24% of the elements were found in the proximal promoter region (<10 kb). Only 11% of the elements contained a classical estrogen response element; 23% of the elements did not have any known response elements, including one derived from the naked cuticle homolog gene, which was associated with the recruitment of p160 coactivators. Transfection studies found that 80% of the 173 elements were regulated by E2, raloxifene, or tamoxifen with ERα or ERβ. Tamoxifen was more effective than raloxifene at activating the elements with ERα, whereas raloxifene was superior with ERβ. Our findings demonstrate that E2, tamoxifen, and raloxifene differentially regulate native ER-regulatory elements isolated by chromatin immunoprecipitation with ERα and ERβ. PMID:17962382

Relative roughness controls on incipient sediment motion in steep channels

NASA Astrophysics Data System (ADS)

Prancevic, J.; Lamb, M. P.; Fuller, B. M.

2012-12-01

For over eight decades, researchers have noted an appreciable increase in the nondimensional shear stress (Shields number) at initiation of fluvial bedload transport with increasing bed slope. The precise cause of the trend, however, is obscured by the covariance of several factors with increased slope: a greater downstream component of the gravity acting on the grains and fluid, changes in bed morphology, increased grainsize relative to the channel width that may lead to grain bridging, and increased grainsize relative to flow depth (relative roughness) that may change flow hydraulics and particle buoyancy. Here, we report on ongoing laboratory experiments spanning a wide range of bed slopes (2% to 67%) designed to isolate these variables and determine the true cause of heightened critical Shields numbers on steep slopes. First, we eliminated bed morphology as a factor by using only planar beds. To investigate the effect of grain bridging, we used two different channel widths, representing width-to-grainsize ratios of 23:1 and 9:1. Finally, to separate the effects of slope from relative roughness, we compared incipient motion conditions for acrylic particles (submerged specific gravity of 0.15) to natural siliciclastic gravel (submerged specific gravity of 1.65). Different particle densities allowed us to explore incipient motion as a function of relative roughness, independent of channel slope, because lighter particles move at shallower flow depths than heavier ones of the same size. Results show that both materials exhibit a positive trend between bed slope and critical Shields number despite the existence of planar beds for all slopes. Furthermore, changing the grainsize-to-width ratio had a negligible effect on this trend. For all slopes, the critical Shields number for bedload transport was higher for the acrylic particles than for gravel, indicating that relative roughness has a strong control on incipient sediment motion independent of channel slope. These results are consistent with a simple force balance model that considers the effect of relative roughness on flow hydraulics and particle buoyancy, and neglects grain bridging and particle wedging. Together, our results indicate that heightened critical Shields number on steep planar beds is fundamentally due to the increase in relative roughness with increasing slope at the onset of sediment motion.

Transposable genetic elements in Spirulina and potential applications for genetic engineering

NASA Astrophysics Data System (ADS)

Hiroyuki, Kojima; Qin, Song; Thankappan, Ajith Kumar; Yoshikazu, Kawata; Shin-Ichi, Yano

1998-03-01

Transposable elements in cyanobacteria are briefly reviewed. Evidence is presented to show that transposable elements in Spirulina platensis is actually reflected on the phenotype change, i e., helical to straight filaments. Transposition intermediates of DNA were isolated from the extrachromosome and the transposition was related to helical variations in Spirulina. Uses of transposable elements for microalgal recombination are discussed based on the transposition mechanism.

Assessment of Ice Shape Roughness Using a Self-Orgainizing Map Approach

NASA Technical Reports Server (NTRS)

Mcclain, Stephen T.; Kreeger, Richard E.

2013-01-01

Self-organizing maps are neural-network techniques for representing noisy, multidimensional data aligned along a lower-dimensional and nonlinear manifold. For a large set of noisy data, each element of a finite set of codebook vectors is iteratively moved in the direction of the data closest to the winner codebook vector. Through successive iterations, the codebook vectors begin to align with the trends of the higher-dimensional data. Prior investigations of ice shapes have focused on using self-organizing maps to characterize mean ice forms. The Icing Research Branch has recently acquired a high resolution three dimensional scanner system capable of resolving ice shape surface roughness. A method is presented for the evaluation of surface roughness variations using high-resolution surface scans based on a self-organizing map representation of the mean ice shape. The new method is demonstrated for 1) an 18-in. NACA 23012 airfoil 2 AOA just after the initial ice coverage of the leading 5 of the suction surface of the airfoil, 2) a 21-in. NACA 0012 at 0AOA following coverage of the leading 10 of the airfoil surface, and 3) a cold-soaked 21-in.NACA 0012 airfoil without ice. The SOM method resulted in descriptions of the statistical coverage limits and a quantitative representation of early stages of ice roughness formation on the airfoils. Limitations of the SOM method are explored, and the uncertainty limits of the method are investigated using the non-iced NACA 0012 airfoil measurements.

Aeolian Shear Stress Ratio Measurements within Mesquite-Dominated Landscapes of the Chihuahuan Desert, New Mexico, USA

NASA Technical Reports Server (NTRS)

King, James; Nickling, W. G.; Gilliles, J. A.

2006-01-01

A field study was conducted to ascertain the amount of protection that mesquite-dominated communities provide to the surface from wind erosion. The dynamics of the locally accelerated evolution of a mesquite/coppice dune landscape and the undetermined spatial dependence of potential erosion by wind from a shear stress partition model were investigated. Sediment transport and dust emission processes are governed by the amount of protection that can be provided by roughness elements. Although shear stress partition models exist that can describe this, their accuracy has only been tested against a limited dataset because instrumentation has previously been unable to provide the necessary measurements. This study combines the use of meteorological towers and surface shear stress measurements with Irwin sensors to measure the partition of shear stress in situ. The surface shear stress within preferentially aligned vegetation (within coppice dune development) exhibited highly skewed distributions, while a more homogenous surface stress was recorded at a site with less developed coppice dunes. Above the vegetation, the logarithmic velocity profile deduced roughness length (based on 10-min averages) exhibited a distinct correlation with compass direction for the site with vegetation preferentially aligned, while the site with more homogenously distributed vegetation showed very little variation in the roughness length. This distribution in roughness length within an area, defines a distribution of a resolved shear stress partitioning model based on these measurements, ultimately providing potential closure to a previously uncorrelated model parameter.

Aeolian shear stress ratio measurements within mesquite-dominated landscapes of the Chihuahuan Desert, New Mexico, USA

NASA Astrophysics Data System (ADS)

King, James; Nickling, W. G.; Gillies, J. A.

2006-12-01

A field study was conducted to ascertain the amount of protection that mesquite-dominated communities provide to the surface from wind erosion. The dynamics of the locally accelerated evolution of a mesquite/coppice dune landscape and the undetermined spatial dependence of potential erosion by wind from a shear stress partition model were investigated. Sediment transport and dust emission processes are governed by the amount of protection that can be provided by roughness elements. Although shear stress partition models exist that can describe this, their accuracy has only been tested against a limited dataset because instrumentation has previously been unable to provide the necessary measurements. This study combines the use of meteorological towers and surface shear stress measurements with Irwin sensors to measure the partition of shear stress in situ. The surface shear stress within preferentially aligned vegetation (within coppice dune development) exhibited highly skewed distributions, while a more homogenous surface stress was recorded at a site with less developed coppice dunes. Above the vegetation, the logarithmic velocity profile deduced roughness length (based on 10-min averages) exhibited a distinct correlation with compass direction for the site with vegetation preferentially aligned, while the site with more homogenously distributed vegetation showed very little variation in the roughness length. This distribution in roughness length within an area, defines a distribution of a resolved shear stress partitioning model based on these measurements, ultimately providing potential closure to a previously uncorrelated model parameter.

Ion beam figuring of CVD silicon carbide mirrors

NASA Astrophysics Data System (ADS)

Gailly, P.; Collette, J.-P.; Fleury Frenette, K.; Jamar, C.

2017-11-01

Optical and structural elements made of silicon carbide are increasingly found in space instruments. Chemical vapor deposited silicon carbide (CVD-SiC) is used as a reflective coating on SiC optics in reason of its good behavior under polishing. The advantage of applying ion beam figuring (IBF) to CVD-SiC over other surface figure-improving techniques is discussed herein. The results of an IBF sequence performed at the Centre Spatial de Liège on a 100 mm CVD-SiC mirror are reported. The process allowed to reduce the mirror surface errors from 243 nm to 13 nm rms . Beside the surface figure, roughness is another critical feature to consider in order to preserve the optical quality of CVD-SiC . Thus, experiments focusing on the evolution of roughness were performed in various ion beam etching conditions. The roughness of samples etched at different depths down to 3 ≠m was determined with an optical profilometer. These measurements emphasize the importance of selecting the right combination of gas and beam energy to keep roughness at a low level. Kaufman-type ion sources are generally used to perform IBF but the performance of an end-Hall ion source in figuring CVD-SiC mirrors was also evaluated in this study. In order to do so, ion beam etching profiles obtained with the end-Hall source on CVD-SiC were measured and used as a basis for IBF simulations.

Wetland Hydrological Connectivity: A Classification Approach and Continental Assessment

EPA Science Inventory

Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrolo...

Alone on the Inside: The Impact of Social Isolation and Helping Others on AOD Use and Criminal Activity

ERIC Educational Resources Information Center

Johnson, Byron R.; Pagano, Maria E.; Lee, Matthew T.; Post, Stephen G.

2018-01-01

Because addiction is a socially isolating disease, social support for recovery is an important element of treatment planning. This study examines the relationship between social isolation, giving and receiving social support in Alcoholics Anonymous during treatment, and post-treatment outcomes among juvenile offenders court-referred to addiction…

Elemental and topographical imaging of microscopic variations in deposition on NSTX-U and DIII-D samples

NASA Astrophysics Data System (ADS)

Skinner, C. H.; Kaita, R.; Koel, B. E.; Chrobak, C. P.; Wampler, W. R.

2017-10-01

Tokamak plasma facing components (PFCs) have surface roughness that can cause microscopic spatial variations in erosion and deposition and hence influence material migration. Previous RBS measurements showed indirect evidence for this but the spatial (0.5mm) resolution was insufficient for direct imaging. We will present elemental images at sub-micron resolution of deposition on NSTX-U and DiMES samples that show strong microscopic variations and correlate this with 3D topographical maps of surface irregularities. The elemental imaging is performed with a Scanning Auger Microprobe (SAM) that measures element-specific Auger electrons excited by an SEM electron beam. 3D topographical maps of the samples are performed with a Leica DCM 3D confocal light microscope and compared to the elemental deposition pattern. The initial results appear consistent with erosion at the downstream edges of the surface pores exposed to the incident ion flux, whereas the deeper regions are shadowed and serve as deposition traps. Support was provided through DOE Contract Numbers DE-AC02-09CH11466, DE-FC02-04ER54698 and DE-NA0003525.

Numerical simulation of high-temperature thermal contact resistance and its reduction mechanism.

PubMed

Liu, Donghuan; Zhang, Jing

2018-01-01

High-temperature thermal contact resistance (TCR) plays an important role in heat-pipe-cooled thermal protection structures due to the existence of contact interface between the embedded heat pipe and the heat resistive structure, and the reduction mechanism of thermal contact resistance is of special interests in the design of such structures. The present paper proposed a finite element model of the high-temperature thermal contact resistance based on the multi-point contact model with the consideration of temperature-dependent material properties, heat radiation through the cavities at the interface and the effect of thermal interface material (TIM), and the geometry parameters of the finite element model are determined by simple surface roughness test and experimental data fitting. The experimental results of high-temperature thermal contact resistance between superalloy GH600 and C/C composite material are employed to validate the present finite element model. The effect of the crucial parameters on the thermal contact resistance with and without TIM are also investigated with the proposed finite element model.

Editorial

NASA Astrophysics Data System (ADS)

Rudolph, Dirk; Elding, Lars-Ivar; Fahlander, Claes; Åberg, Sven

2016-12-01

Science often develops most vigorously through challenging studies of extreme phenomena. Superheavy elements fall into such a category. What is the heaviest element that can exist in Nature? Driven by the continued search for an anticipated "island of stability" of superheavy atomic nuclei and the understanding of their underlying nuclear (in)stability and atomic structure hence chemical properties, the past decades have seen a tremendous progress in experimental ingenuity and theoretical methodology to study and characterize superheavy elements. Therefore, we are very grateful that the Nobel Foundation [1] approved and, jointly with the Knut and Alice Wallenberg Foundation [2], provided the financial resources to organize and conduct the Nobel Symposium NS160, entitled Chemistry and Physics of Heavy and Superheavy Elements. These symposia "are devoted to areas of science where breakthroughs are occurring or deal with other topics of primary cultural or social significance" [1]. About three symposia are held each year, roughly every fourth symposium promotes a topic in physics as primary research area, and from about every third symposium a contemporary Nobel Price is being awarded.

Active Vibration Control of a Railway Vehicle Carbody Using Piezoelectric Elements

NASA Astrophysics Data System (ADS)

Molatefi, Habibollah; Ayoubi, Pejman; Mozafari, Hozhabr

2017-07-01

In recent years and according to modern transportation development, rail vehicles are manufactured lighter to achieve higher speed and lower transportation costs. On the other hand, weight reduction of rail vehicles leads to increase the structural vibration. In this study, Active Vibration Control of a rail vehicle using piezoelectric elements is investigated. The optimal control employed as the control approach regard to the first two modes of vibration. A simplified Car body structure is modeled in Matlab using the finite element theory by considering six DOF beam element and then the Eigen functions and mode shapes are derived. The surface roughness of different classes of rail tracks have been obtained using random vibration theory and applied to the secondary suspension as the excitation of the structure; Then piezoelectric mounted where the greatest moments were captured. The effectiveness of Piezoelectric in structural vibrations attenuation of car body is demonstrated through the state space equations and its effect on modal coefficient.

Numerical simulation of high-temperature thermal contact resistance and its reduction mechanism

PubMed Central

Zhang, Jing

2018-01-01

High-temperature thermal contact resistance (TCR) plays an important role in heat-pipe-cooled thermal protection structures due to the existence of contact interface between the embedded heat pipe and the heat resistive structure, and the reduction mechanism of thermal contact resistance is of special interests in the design of such structures. The present paper proposed a finite element model of the high-temperature thermal contact resistance based on the multi-point contact model with the consideration of temperature-dependent material properties, heat radiation through the cavities at the interface and the effect of thermal interface material (TIM), and the geometry parameters of the finite element model are determined by simple surface roughness test and experimental data fitting. The experimental results of high-temperature thermal contact resistance between superalloy GH600 and C/C composite material are employed to validate the present finite element model. The effect of the crucial parameters on the thermal contact resistance with and without TIM are also investigated with the proposed finite element model. PMID:29547651

Comparative Study of Antenna Elements for TDRSS Enhanced Multiple Access System

NASA Technical Reports Server (NTRS)

Kory, Carol L.; Lambert, Kevin; Acosta, Roberto; Nessel, James

2006-01-01

We compare three antennas, which are candidates for the TDRSS-Continuation enhanced MA array antenna elements. Measured and simulated data show very good agreement for all antenna elements. All of the antennas meet the specifications with the exception of the SBA isolation. However, improvements can likely be made with further design efforts.

A Survey of Plasmas and Their Applications

NASA Technical Reports Server (NTRS)

Eastman, Timothy E.; Grabbe, C. (Editor)

2006-01-01

Plasmas are everywhere and relevant to everyone. We bath in a sea of photons, quanta of electromagnetic radiation, whose sources (natural and artificial) are dominantly plasma-based (stars, fluorescent lights, arc lamps.. .). Plasma surface modification and materials processing contribute increasingly to a wide array of modern artifacts; e.g., tiny plasma discharge elements constitute the pixel arrays of plasma televisions and plasma processing provides roughly one-third of the steps to produce semiconductors, essential elements of our networking and computing infrastructure. Finally, plasmas are central to many cutting edge technologies with high potential (compact high-energy particle accelerators; plasma-enhanced waste processors; high tolerance surface preparation and multifuel preprocessors for transportation systems; fusion for energy production).

Isolation of Persicaria minor sesquiterpene synthase promoter and its deletions for transgenic Arabidopsis thaliana

NASA Astrophysics Data System (ADS)

Omar, Aimi Farehah; Ismail, Ismanizan

2016-11-01

Sesquiterpene synthase (SS) catalyzes the formation of sesquiterpenes from farnesyl diphosphate (FDP) via carbocation intermediates. In this study, the promoter region of sesquiterpene synthase was isolated from Persicaria minor to identify possible cis-acting elements in the promoter. The full-length PmSS promoter of P. minor is 1824-bp sequences. The sequence was analyzed and several putative cis-acting regulatory elements were identified. Three cis-acting regulatory elements were selected for deletion analysis which are cis-acting element involved in wound responsiveness (WUN), cis - acting element involved in defense and stress responsiveness (TC) and cis-acting element involved in ABA responsiveness (ABRE). Series of deletions were conducted to assess the promoter activity producing three truncated fragments promoter; Prom 2 1606-bp, Prom 3 1144- bp, and Prom 4 921-bp. The full-length promoter and its deletion series were cloned into the pBGWFS7 vector which contain β-glucuronidase (GUS) gene and green fluorescent protein (GFP) as the reporter gene. All constructs were successfully transformed into Arabidopsis thaliana based on PCR of positive BASTA resistance plants.

Genome analysis following a national increase in Scarlet Fever in England 2014.

PubMed

Chalker, Victoria; Jironkin, Aleksey; Coelho, Juliana; Al-Shahib, Ali; Platt, Steve; Kapatai, Georgia; Daniel, Roger; Dhami, Chenchal; Laranjeira, Marisa; Chambers, Timothy; Guy, Rebecca; Lamagni, Theresa; Harrison, Timothy; Chand, Meera; Johnson, Alan P; Underwood, Anthony

2017-03-10

During a substantial elevation in scarlet fever (SF) notifications in 2014 a national genomic study was undertaken of Streptococcus pyogenes (Group A Streptococci, GAS) isolates from patients with SF with comparison to isolates from patients with invasive disease (iGAS) to test the hypotheses that the increase in SF was due to either the introduction of one or more new/emerging strains in the population in England or the transmission of a known genetic element through the population of GAS by horizontal gene transfer (HGT) resulting in infections with an increased likelihood of causing SF. Isolates were collected to provide geographical representation, for approximately 5% SF isolates from each region from 1 st April 2014 to 18 th June 2014. Contemporaneous iGAS isolates for which genomic data were available were included for comparison. Data were analysed in order to determine emm gene sequence type, phylogenetic lineage and genomic clade representation, the presence of known prophage elements and the presence of genes known to confer pathogenicity and resistance to antibiotics. 555 isolates were analysed, 303 from patients with SF and 252 from patients with iGAS. Isolates from patients with SF were of multiple distinct emm sequence types and phylogenetic lineages. Prior to data normalisation, emm3 was the predominant type (accounting for 42.9% of SF isolates, 130/303 95%CI 37.5-48.5; 14.7% higher than the percentage of emm3 isolates found in the iGAS isolates). Post-normalisation emm types, 4 and 12, were found to be over-represented in patients with SF versus iGAS (p < 0.001). A single gene, ssa, was over-represented in isolates from patients with SF. No single phage was found to be over represented in SF vs iGAS. However, a "meta-ssa" phage defined by the presence of :315.2, SPsP6, MGAS10750.3 or HK360ssa, was found to be over represented. The HKU360.vir phage was not detected yet the HKU360.ssa phage was present in 43/63 emm12 isolates but not found to be over-represented in isolates from patients with SF. There is no evidence that the increased number of SF cases was a strain-specific or known mobile element specific phenomenon, as the increase in SF cases was associated with multiple lineages of GAS.

A spectral model for signal elements isolated from zebrafish photopic electroretinogram

PubMed Central

Nelson, Ralph; Singla, Nirmish

2009-01-01

The zebrafish photopic ERG sums isolatable elements. In each element red, blue, green and UV (r, g, b, u) cone signals combine in a way that reflects retinal organization. ERG responses to monochromatic stimuli of different wavelengths and irradiances were recorded on a white, rod suppressing background using superfused eyecups. Onset elements were isolated with glutamatergic blockers and response subtractions. CNQX blocked ionotropic (AMPA/kainate) glutamate receptors; L-AP4 or CPPG blocked metabotropic (mGluR6) glutamate receptors; TBOA blocked glutamate transporters; and L-Aspartate inactivated all glutamatergic mechanisms. Seven elements emerged: photopic PIII, the L-Aspartate-isolated cone response; b1, a CNQX-sensitive early b-wave element of inner retinal origin; PII, a photopic, CNQX-insensitive, composite b-wave element from ON bipolar cells; PIIm, an L-AP4/CPPG-sensitive, CNQX-insensitive metabotropic sub-element of PII; PIInm, an L-AP4/CPPG/CNQX-insensitive, non-metabotropic sub-element of PII; a1nm, a TBOA-sensitive, CNQX/L-AP4/CPPG-insensitive, non-metabotropic, post-photoreceptor a-wave element; and a2, a CNQX-sensitive a-wave element linked to OFF bipolar cells. The first five elements were fit with a spectral model that demonstrates independence of cone color pathways. From this Vmax and half-saturation values (k) for the contributing r- g- b- and u-cone signals were calculated. Two signal patterns emerged. For PIII or PIInm the Vmax order was Vr > Vg ≫ Vb ≈ Vu. For b1, PII, and PIIm the Vmax order was Vr ≈ Vb > Vg > Vu. In either pattern u-cone amplitude (Vu) was smallest, but u-cone sensitivity (ku362) was greatest, some 10-30 times greater than r-cone (kr570). The spectra of b1/PII/PIIm elements peaked near b-cone and u-cone absorbance maxima regardless of criteria, but the spectra of PIII/PIInm elements shifted from b- towards r-cone absorbance maxima as criterion levels increased. The greatest gains in Vmax relative to PIII occurred for the b- and u-cone signals in the b1/PII/PIIm b-wave elements. This suggests a high-gain, prolific metabotropic circuitry for b- and u-cone bipolar cells. PMID:19723365

Super-hydrophobic coatings with nano-size roughness prepared with simple PECVD method

NASA Astrophysics Data System (ADS)

Choi, Yoon S.; Lee, Joon S.; Jin, Su B.; Han, Jeon G.

2013-08-01

A simple and conventional method to synthesize nearly flat super-hydrophobic coatings was studied. Conventional plasma enhanced chemical vapour deposition (PECVD) was adopted to synthesize hydrophobic coatings on plastic and glass substrates at room temperature. Hexamethyldisilane was used as a precursor, and hydrogen gas was added to modulate the surface roughness and passivate defects, such as dangling bond and electrically uncovered polar sites rendering non-hydrophobicity. The static water contact angle (WCA) was controlled in the range 120°-160° by adjusting process parameters, especially the hydrogen flow rate and power. AFM showed that the film with a WCA of 145° has as small as 2.5 nm roughness in rms value. In the resistance test of salt water and cosmetics, this film showed excellent results owing to super-hydrophobicity and defect passivation which keeps the surface isolated from external agents. In order to exploit these results, Rare gas analysis was used to examine the process plasma and Fourier transform infrared (FTIR) was used to analyse the chemical structures of the super-hydrophobic films. In the FTIR results, the remarkable increase in the modes of Si-Hx and Si-C bonds as well as Si-CH2-Si in the film was observed indicating the defect passivation and closely packed dense film structure.

Dependence of Pentacene Crystal Growth on Dielectric Roughness for Fabrication of Flexible Field-Effect Transistors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, H.; Yang, C; Kim, S

2010-01-01

The dependence of pentacene nanostructures on gate dielectric surfaces were investigated for flexible organic field-effect transistor (OFET) applications. Two bilayer types of polymer/aluminum oxide (Al{sub 2}O{sub 3}) gate dielectrics were fabricated on commercial Al foils laminated onto a polymer back plate. Some Al foils were directly used as gate electrodes, and others were smoothly polished by an electrolytic etching. These Al surfaces were then anodized and coated with poly({alpha}-methyl styrene) (PAMS). For PAMS/Al{sub 2}O{sub 3} dielectrics onto etched Al foils, surface roughness up to 1 nm could be reached, although isolated dimples with a lateral diameter of several micrometers weremore » still present. On PAMS/Al{sub 2}O{sub 3} dielectrics (surface roughness >40 nm) containing mechanical grooves of Al foil, average hole mobility ({mu}FET) of 50 nm thick pentacene-FETs under the low operating voltages (|V| < 6 V) was {approx}0.15 cm{sup 2} V{sup -1} s{sup -1}. In contrast, pentacene-FETs employing the etched Al gates exhibited {mu}FET of 0.39 cm{sup 2} V{sup -1} s{sup -1}, which was comparable to that of reference samples with PAMS/Al{sub 2}O{sub 3} dielectrics onto flat sputtered Al gates. Conducting-probe atomic force microscopy and two-dimensional X-ray diffraction of pentacene films with various thicknesses revealed different out-of-plane and in-plane crystal orderings of pentacene, depending on the surface roughness of the gate dielectrics.« less

Isolated Fungal Promoters and Gene Transcription Terminators and Methods of Protein and Chemical Production in a Fungus

DOEpatents

Dai, Ziyu; Lasure, Linda L.; Magnuson, Jon K.

2008-11-11

The present invention encompasses isolated gene regulatory elements and gene transcription terminators that are differentially expressed in a native fungus exhibiting a first morphology relative to the native fungus exhibiting a second morphology. The invention also encompasses a method of utilizing a fungus for protein or chemical production. A transformed fungus is produced by transforming a fungus with a recombinant polynucleotide molecule. The recombinant polynucleotide molecule contains an isolated polynucleotide sequence linked operably to another molecule comprising a coding region of a gene of interest. The gene regulatory element and gene transcription terminator may temporally and spatially regulate expression of particular genes for optimum production of compounds of interest in a transgenic fungus.

Isolated fungal promoters and gene transcription terminators and methods of protein and chemical production in a fungus

DOEpatents

Dai, Ziyu; Lasure, Linda L.; Magnuson, Jon K.

2008-11-11

The present invention encompasses isolated gene regulatory elements and gene transcription terminators that are differentially expressed in a native fungus exhibiting a first morphology relative to the native fungus exhibiting a second morphology. The invention also encompasses a method of utilizing a fungus for protein or chemical production. A transformed fungus is produced by transforming a fungus with a recombinant polynucleotide molecule. The recombinant polynucleotide molecule contains an isolated polynucleotide sequence linked operably to another molecule comprising a coding region of a gene of interest. The gene regulatory element and gene transcription terminator may temporally and spatially regulate expression of particular genes for optimum production of compounds of interest in a transgenic fungus.

Isolated fungal promoters and gene transcription terminators and methods of protein and chemical production in a fungus

DOEpatents

Dai, Ziyu; Lasure, Linda L; Magnuson, Jon K

2014-05-27

The present invention encompasses isolated gene regulatory elements and gene transcription terminators that are differentially expressed in a native fungus exhibiting a first morphology relative to the native fungus exhibiting a second morphology. The invention also encompasses a method of utilizing a fungus for protein or chemical production. A transformed fungus is produced by transforming a fungus with a recombinant polynucleotide molecule. The recombinant polynucleotide molecule contains an isolated polynucleotide sequence linked operably to another molecule comprising a coding region of a gene of interest. The gene regulatory element and gene transcription terminator may temporally and spatially regulate expression of particular genes for optimum production of compounds of interest in a transgenic fungus.

Abundance and Distribution of Geographically Isolated Wetlands across the Conterminous United States

EPA Science Inventory

Geographically isolated wetlands (GIWS) are important landscape elements involved in hydrologic, biogeochemical, and biological functioning. Their influence, under certain circumstances, can significantly affect other waters of the Unites States. However, there have been no data-...

Comparison of the gentamicin resistance transposon Tn5281 with regions encoding gentamicin resistance in Enterococcus faecalis isolates from diverse geographic locations.

PubMed Central

Hodel-Christian, S L; Murray, B E

1992-01-01

The genetic determinant encoding gentamicin resistance (Gmr) on the beta-lactamase encoding plasmid pBEM10 of Enterococcus faecalis HH22 is carried on a transposon, termed Tn5281, that is highly related to the staphylococcal Gmr transposons Tn4001 found in Australian isolates of Staphylococcus aureus and Tn4031 found in United States isolates of Staphylococcus epidermidis. We have now studied plasmid DNA from Gmr strains of E. faecalis isolated from diverse geographical locations (Houston, Pennsylvania, Thailand, and Chile) by using restriction endonuclease analysis and DNA-DNA hybridization to determine whether other Gmr E. faecalis carry Tn5281 or a similar type of element. We also compared these enterococci to several United States isolates of Staphylococcus aureus with nonmobile Gmr determinants. Three E. faecalis isolates (from Houston and Chile) carried Tn5281-like elements, whereas two isolates (from Houston and Pennsylvania) had restriction endonuclease and DNA-DNA hybridization patterns more similar to those of the Tn4001-IS257 hybrid found in the nonmobile Gmr determinants in United States isolates of S. aureus. A strain from Thailand had a third pattern unrelated to either Tn5281 or the nonmobile Gmr determinants present in United States isolates of S. aureus. Our results demonstrate that there is both similarity and diversity between the Gmr determinant of strains of E. faecalis isolated in diverse geographic locations. Images PMID:1332593

Overexpression of the CYP51A1 Gene and Repeated Elements are Associated with Differential Sensitivity to DMI Fungicides in Venturia inaequalis.

PubMed

Villani, Sara M; Hulvey, Jon; Hily, Jean-Michel; Cox, Kerik D

2016-06-01

The involvement of overexpression of the CYP51A1 gene in Venturia inaequalis was investigated for isolates exhibiting differential sensitivity to the triazole demethylation inhibitor (DMI) fungicides myclobutanil and difenoconazole. Relative expression (RE) of the CYP51A1 gene was significantly greater (P < 0.0001) for isolates with resistance to both fungicides (MRDR phenotype) or with resistance to difenoconazole only (MSDR phenotype) compared with isolates that were resistant only to myclobutanil (MRDS phenotype) or sensitive to both fungicides (MSDS phenotype). An average of 9- and 13-fold increases in CYP51A1 RE were observed in isolates resistant to difenoconazole compared with isolates with MRDS and MSDS phenotypes, respectively. Linear regression analysis between isolate relative growth on myclobutanil-amended medium and log10 RE revealed that little to no variability in sensitivity to myclobutanil could be explained by CYP51A1 overexpression (R(2) = 0.078). To investigate CYP51A1 upstream anomalies associated with CYP51A1 overexpression or resistance to difenoconazole, Illumina sequencing was conducted for three isolates with resistance to difenoconazole and one baseline isolate. A repeated element, "EL 3,1,2", with the properties of a transcriptional enhancer was identified two to four times upstream of CYP51A1 in difenoconazole-resistant isolates but was not found in isolates with the MRDS phenotype. These results suggest that different mechanisms may govern resistance to different DMI fungicides in the triazole group.

Wetland Hydrological Connectivity: A Classification Approach and United States Assessment

EPA Science Inventory

Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrolo...

Do Geographically Isolated Wetlands Influence Landscape Functions?

EPA Science Inventory

Landscape functions such as flow generation, nutrient and sediment retention, and biodiversity support depend on the exchange of solutes, particles, energy, and organisms between elements in hydrological and habitat networks. Wetlands are important network elements, providing hyd...

Discharging a DC bus capacitor of an electrical converter system

DOEpatents

Kajouke, Lateef A; Perisic, Milun; Ransom, Ray M

2014-10-14

A system and method of discharging a bus capacitor of a bidirectional matrix converter of a vehicle are presented here. The method begins by electrically shorting the AC interface of the converter after an AC energy source is disconnected from the AC interface. The method continues by arranging a plurality of switching elements of a second energy conversion module into a discharge configuration to establish an electrical current path from a first terminal of an isolation module, through an inductive element, and to a second terminal of the isolation module. The method also modulates a plurality of switching elements of a first energy conversion module, while maintaining the discharge configuration of the second energy conversion module, to at least partially discharge a DC bus capacitor.

Molecular typing of isolates obtained from aborted foetuses in Brucella-free Holstein dairy cattle herd after immunisation with Brucella abortus RB51 vaccine in Egypt.

PubMed

Wareth, Gamal; Melzer, Falk; Böttcher, Denny; El-Diasty, Mohamed; El-Beskawy, Mohamed; Rasheed, Nesma; Schmoock, Gernot; Roesler, Uwe; Sprague, Lisa D; Neubauer, Heinrich

2016-12-01

Bovine brucellosis is endemic in Egypt in spite of application of surveillance and control measures. An increase of abortions was reported in a Holstein dairy cattle herd with 600 animals in Damietta governorate in Egypt after immunisation with Brucella (B.) abortus RB51 vaccine. Twenty one (10.6%) of 197 vaccinated cows aborted after 3 months. All aborted cows had been tested seronegative for brucellosis in the past 3 years. B. abortus was isolated from four foetuses. Conventional biochemical and bacteriological identification and polymerase chain reaction (PCR) confirmed two B. abortus biovar (bv.) 1 smooth and two B. abortus rough strains. None of the B. abortus isolates were identified as RB51. Genotyping analysis by multiple locus of variable number tandem repeats analysis based on 16 markers (MLVA-16) revealed two different profiles with low genetic diversity. B. abortus bv1 was introduced in the herd and caused abortions. Copyright © 2016 Elsevier B.V. All rights reserved.

Genetic basis of male sterility in hybrids between two closely related species of Drosophila.

PubMed Central

Coyne, J A

1984-01-01

Drosophila simulans and Drosophila mauritiana are closely related sibling species, the former cosmopolitan and the latter restricted to the small oceanic island of Mauritius. Genetic analysis of male sterility in hybrids between these species shows that at least five loci (one on each chromosome arm) are responsible for this reproductive isolation. This is the most loci that could have been detected with the techniques used and implies that the true genetic divergence for sterility is even greater. The effects of chromosome segments on the character are roughly additive, with the X-linked segment making the largest contribution to sterility. The large effect of X chromosomes on male-limited reproductive isolation and the frequent limitation of hybrid sterility to males may be attributable to fertility interactions between X and Y chromosomes. These results parallel what has been found in other Drosophila species and relate to recent theories of how reproductive isolation evolves in small founder populations. PMID:6589604

Mammalian Toxicity of Munitions Compounds Phase III: Effects of Life-Time Exposure Part II: Trinitroglycerin

DTIC Science & Technology

1978-11-01

injuries due to fighting, which may be treated by isolation, clean- ing the wounds, and antibiotic therapy, systemic and local . ii B. Basic ProtocolI 1...column contained 100 ml of 5% sodium hydroxide. Rats were given feed and water ad libitum. At the end of 24 hr, the rats were anesthetized with ether...Furthermore, their fur was usually a dirty tan color. There were no obviously localized stainings, but the rough, matted appearance showed that this was

Ion Source Development for a Compact Proton Beam Writing System III

DTIC Science & Technology

2013-06-28

to yield ion beam with energies up to 3 keV. The electrical power required to operate multiple components (like RF Valve , Probe and Extraction...they are powered through an isolation transformer. The required gas, to be ionized in the RF ion source, is fed through a coarse needle valve ...connector, the system can be pumped down to 3×10-2 mbar using an oil roughing pump. Nitrogen gas is feed in by adjusting the gas regulating valve

Burnishing of rotatory parts to improve surface quality

NASA Astrophysics Data System (ADS)

Celaya, A.; López de Lacalle, L. N.; Albizuri, J.; Alberdi, R.

2009-11-01

In this paper, the use of rolling burnishing process to improve the final quality of railway and automotive workpieces is studied. The results are focused on the improvement of the manufacturing processes of rotary workpieces used in railway and automotion industry, attending to generic target of achieving `maximum surface quality with minimal process time'. Burnishing is a finishing operation in which plastic deformation of surface irregularities occurs by applying pressure through a very hard element, a roller or a ceramic ball. This process gives additional advantages to the workpiece such as good surface roughness, increased hardness and high compressive residual stresses. The effect of the initial turning conditions on the final burnishing operation has also been studied. The results show that feeds used in the initial rough turning have little influence in the surface finish of the burnished workpieces. So, the process times of the combined turning and burnishing processes can be reduced, optimizing the shaft's machining process.

Rough Gold Electrodes for Decreasing Impedance at the Electrolyte/Electrode Interface

PubMed Central

Koklu, Anil; Sabuncu, Ahmet C.; Beskok, Ali

2016-01-01

Electrode polarization at the electrolyte/electrode interface is often undesirable for bio-sensing applications, where charge accumulated over an electrode at constant potential causes large potential drop at the interface and low measurement sensitivity. In this study, novel rough electrodes were developed for decreasing electrical impedance at the interface. The electrodes were fabricated using electrochemical deposition of gold and sintering of gold nanoparticles. The performances of the gold electrodes were compared with platinum black electrodes. A constant phase element model was used to describe the interfacial impedance. Hundred folds of decrease in interfacial impedance were observed for fractal gold electrodes and platinum black. Biotoxicity, contact angle, and surface morphology of the electrodes were investigated. Relatively low toxicity and hydrophilic nature of the fractal and granulated gold electrodes make them suitable for bioimpedance and cell electromanipulation studies compared to platinum black electrodes which are both hydrophobic and toxic. PMID:27695132

Use of radar in urban studies

NASA Technical Reports Server (NTRS)

Bryan, M. L.

1976-01-01

The use of side-looking airborne radar for urban studies is reviewed with attention given to the work of Moore (1969) and Lewis (1968) which may be summarized as follows: (1) linear elements of the transportation net were easily defined, (2) gross patterns of industry, residential and open space land were identified, but it was not possible to map the land use boundaries in great detail, (3) commercial land areas were often difficult to identify, and (4) multiple polarized imagery was helpful in correctly interpreting the total scene. It is found that the sensitivity of radar to surface roughness and the availability of multiple wavelength data allow the discrimination of variations in the surface roughness of intra-urban areas. An L-band imaging radar (25 cm; 1215-1225 GHz) of 25 m resolution will be operating from satellite altitudes in 1978 and will increase the availability of radar data.

Discrete sonic jets used as boundary-layer trips at Mach numbers of 6 and 8.5

NASA Technical Reports Server (NTRS)

Stone, D. R.; Cary, A. M., Jr.

1972-01-01

The effect of discrete three-dimensional sonic jets used to promote transition on a sharp-leading-edge flat plate at Mach numbers of 6 and 8.5 and unit Reynolds numbers as high as 2.5 x 100,000 per cm in the Langley 20-inch hypersonic tunnels is discussed. An examination of the downstream flow-field distortions associated with the discrete jets for the Mach 8.5 flow was also conducted. Jet trips are found to produce lengths of turbulent flow comparable to those obtained for spherical-roughness-element trips while significantly reducing the downstream flow distortions. A Reynolds number based upon secondary jet penetration into a supersonic main flow is used to correlate jet-trip effectiveness just as a Reynolds number based upon roughness height is used to correlate spherical-trip effectiveness. Measured heat-transfer data are in agreement with the predictions.

Stochastic road excitation and control feasibility in a 2D linear tyre model

NASA Astrophysics Data System (ADS)

Rustighi, E.; Elliott, S. J.

2007-03-01

For vehicle under normal driving conditions and speeds above 30-40 km/h the dominating internal and external noise source is the sound generated by the interaction between the tyre and the road. This paper presents a simple model to predict tyre behaviour in the frequency range up to 400 Hz, where the dominant vibration is two dimensional. The tyre is modelled as an elemental system, which permits the analysis of the low-frequency tyre response when excited by distributed stochastic displacements in the contact patch. A linear model has been used to calculate the contact forces from the road roughness and thus calculate the average spectral properties of the resulting radial velocity of the tyre in one step from the spectral properties of the road roughness. Such a model has also been used to provide an estimate of the potential effect of various active control strategies for reducing the tyre vibrations.

Grazing Incidence Optics for X-rays Interferometry

NASA Technical Reports Server (NTRS)

Shipley, Ann; Zissa, David; Cash, Webster; Joy, Marshall

1999-01-01

Grazing incidence mirror parameters and constraints for x-ray interferometry are described. We present interferometer system tolerances and ray trace results used to define mirror surface accuracy requirements. Mirror material, surface figure, roughness, and geometry are evaluated based on analysis results. We also discuss mirror mount design constraints, finite element analysis, environmental issues, and solutions. Challenges associated with quantifying high accuracy mirror surface quality are addressed and test results are compared with theoretical predictions.

Preparation of Composite Fluoropolymers with Enhanced Dewetting Using Fluorinated Silsesquioxanes as Drop-In Modifiers (Preprint)

DTIC Science & Technology

2010-02-17

Dewetting Using Fluorinated Silsesquioxanes as Drop-In Modifiers (Preprint) 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Scott T... Dewetting Using Fluorinated Silsesquioxanes as Drop-In Modifiers (Preprint) Scott T. Iacono, a,b Stephen M. Budy, a,c Dennis W. Smith, a and...nanometer-sized surface roughness due to POSS aggregation. 23 Likewise, similar dewetting behavior, 90 albeit modest, was observed utilizing partially

Simplification of the helical TEN2 laser

NASA Astrophysics Data System (ADS)

Krahn, K.-H.

1980-04-01

The observation that the helical TEN2 laser can effectively be simplified by giving up the use of decoupling elements as well as by abolishing the segmentation of the electrode structure is examined. Although, as a consequence of this simplification, the operating pressure range was slightly decreased, the output power could be improved by roughly 30%, a result which is attributed to the new electrode geometry exhibiting lower inductance and lower damping losses.

Status of the AFRL/RW Bio-Sensors Lab

DTIC Science & Technology

2012-03-28

shall be subject to any penalty for failing to comply with a collection of information if it does not display a currently valid OMB control number...various materials: polarization characterizations, spectral BRDFs , Mueller matrix elements, surface roughness characterization with a Zygo profilometer... model 5900LV, with the capability to image up to 100,000X at 30,000eV) and an ESEM (FEI Quanta 200, with ancillary equipment including EDAX’s

The practical impact of elastohydrodynamic lubrication

NASA Technical Reports Server (NTRS)

Anderson, W. J.

1978-01-01

The use of elastohydrodynamics in the analysis of rolling element bearings is discussed. Relationships for minimum film thickness and tractive force were incorporated into computer codes and used for bearing performance prediction. The lambda parameter (ratio of film thickness to composite surface roughness) was shown to be important in predicting bearing life and failure mode. Results indicate that at values of lambda below 3 failure modes other than the classic subsurface initiated fatigue can occur.

Airborne Operations in World War II, European Theater

DTIC Science & Technology

1956-09-01

GARDEN Gee Hamilcar HANDS UP Formation usually composed of two or more elements and roughly equivalent to a squadron Forward Visual Control Post Ground...USAF HISTORICAL STUDIES: NO. 97 AIRBORNE OPERATIONS IN WORLD WAR II, EUROPEAN THEATER By Dr. John C. Warren USAF Historical Division Research Studies...OMB control number. 1. REPORT DATE SEP 1956 2. REPORT TYPE 3. DATES COVERED - 4. TITLE AND SUBTITLE Airborne Operations in World War II 5a

Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants

PubMed Central

Zhi, Shuai; Banting, Graham; Li, Qiaozhi; Edge, Thomas A.; Topp, Edward; Sokurenko, Mykola; Scott, Candis; Braithwaite, Shannon; Ruecker, Norma J.; Yasui, Yutaka; McAllister, Tim; Chui, Linda

2016-01-01

ABSTRACT Escherichia coli has been proposed to have two habitats—the intestines of mammals/birds and the nonhost environment. Our goal was to assess whether certain strains of E. coli have evolved toward adaptation and survival in wastewater. Raw sewage samples from different treatment plants were subjected to chlorine stress, and ∼59% of the surviving E. coli strains were found to contain a genetic insertion element (IS30) located within the uspC-flhDC intergenic region. The positional location of the IS30 element was not observed across a library of 845 E. coli isolates collected from various animal hosts or within GenBank or whole-genome reference databases for human and animal E. coli isolates (n = 1,177). Phylogenetics clustered the IS30 element-containing wastewater E. coli isolates into a distinct clade, and biomarker analysis revealed that these wastewater isolates contained a single nucleotide polymorphism (SNP) biomarker pattern that was specific for wastewater. These isolates belonged to phylogroup A, possessed generalized stress response (RpoS) activity, and carried the locus of heat resistance, features likely relevant to nonhost environmental survival. Isolates were screened for 28 virulence genes but carried only the fimH marker. Our data suggest that wastewater contains a naturalized resident population of E. coli. We developed an endpoint PCR targeting the IS30 element within the uspC-flhDC intergenic region, and all raw sewage samples (n = 21) were positive for this marker. Conversely, the prevalence of this marker in E. coli-positive surface and groundwater samples was low (≤5%). This simple PCR assay may represent a convenient microbial source-tracking tool for identification of water samples affected by municipal wastewater. IMPORTANCE The results of this study demonstrate that some strains of E. coli appear to have evolved to become naturalized populations in the wastewater environment and possess a number of stress-related genetic elements likely important for survival in this nonhost environment. The presence of non-host-adapted strains in wastewater challenges our understanding of using E. coli as a microbial indicator of wastewater treatment performance, suggesting that the E. coli strains present in human and animal feces may be very different from those found in treated wastewater. PMID:27371583

Enhancing Surface Finish of Additively Manufactured Titanium and Cobalt Chrome Elements Using Laser Based Finishing

NASA Astrophysics Data System (ADS)

Gora, Wojciech S.; Tian, Yingtao; Cabo, Aldara Pan; Ardron, Marcus; Maier, Robert R. J.; Prangnell, Philip; Weston, Nicholas J.; Hand, Duncan P.

Additive manufacturing (AM) offers the possibility of creating a complex free form object as a single element, which is not possible using traditional mechanical machining. Unfortunately the typically rough surface finish of additively manufactured parts is unsuitable for many applications. As a result AM parts must be post-processed; typically mechanically machined and/or and polished using either chemical or mechanical techniques (both of which have their limitations). Laser based polishing is based on remelting of a very thin surface layer and it offers potential as a highly repeatable, higher speed process capable of selective area polishing, and without any waste problems (no abrasives or liquids). In this paper an in-depth investigation of CW laser polishing of titanium and cobalt chrome AM elements is presented. The impact of different scanning strategies, laser parameters and initial surface condition on the achieved surface finish is evaluated.

Analysis of ballistic transport in nanoscale devices by using an accelerated finite element contact block reduction approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, H.; Li, G., E-mail: gli@clemson.edu

2014-08-28

An accelerated Finite Element Contact Block Reduction (FECBR) approach is presented for computational analysis of ballistic transport in nanoscale electronic devices with arbitrary geometry and unstructured mesh. Finite element formulation is developed for the theoretical CBR/Poisson model. The FECBR approach is accelerated through eigen-pair reduction, lead mode space projection, and component mode synthesis techniques. The accelerated FECBR is applied to perform quantum mechanical ballistic transport analysis of a DG-MOSFET with taper-shaped extensions and a DG-MOSFET with Si/SiO{sub 2} interface roughness. The computed electrical transport properties of the devices obtained from the accelerated FECBR approach and associated computational cost as amore » function of system degrees of freedom are compared with those obtained from the original CBR and direct inversion methods. The performance of the accelerated FECBR in both its accuracy and efficiency is demonstrated.« less

Microbeam Characterization of Corning Archeological Reference Glasses: New Additions to the Smithsonian Microbeam Standard Collection

PubMed Central

Vicenzi, Edward P.; Eggins, Stephen; Logan, Amelia; Wysoczanski, Richard

2002-01-01

An initial study of the minor element, trace element, and impurities in Corning archeological references glasses have been performed using three microbeam techniques: electron probe microanalysis (EPMA), laser ablation ICP-mass spectrometry (LA ICP-MS), and secondary ion mass spectrometry (SIMS). The EPMA results suggest a significant level of heterogeneity for a number of metals. Conversely, higher precision and a larger sampling volume analysis by LA ICP-MS indicates a high degree of chemical uniformity within all glasses, typically <2 % relative (1 σ). SIMS data reveal that small but measurable quantities of volatile impurities are present in the glasses, including H at roughly the 0.0001 mass fraction level. These glasses show promise for use as secondary standards for minor and trace element analyses of insulating materials such as synthetic ceramics, minerals, and silicate glasses. PMID:27446764

The diversity of sequence and chromosomal distribution of new transposable element-related segments in the rye genome revealed by FISH and lineage annotation

USDA-ARS?s Scientific Manuscript database

The rye genome features a high percentage of repetitive elements, especially transposable elements (TEs). However, studies about the constitution and organization of TEs on rye chromosomes are limited. In this study, 97 unique TE segments were isolated and characterized; 50 TE segmemts showed varyin...

The Impact of Complexity on the Expertise Reversal Effect: Experimental Evidence from Testing Accounting Students

ERIC Educational Resources Information Center

Blayney, Paul; Kalyuga, Slava; Sweller, John

2016-01-01

Element interactivity is a central concept of cognitive load theory that defines the complexity of a learning task. The reduction of task complexity through a temporary segmentation or isolation of interacting elements was investigated with 104 students randomly assigned to an interacting elements group, where participants were required to deal…

Genotypes, antibiotic resistance, and virulence factors of staphylococci from ready-to-eat food.

PubMed

Podkowik, Magdalena; Bystroń, Jarosław; Bania, Jacek

2012-01-01

Sixty-seven staphylococcal isolates belonging to 12 species were obtained from 70 ready-to-eat food products. Staphylococcus aureus (n=25), and Staphylococcus epidermidis (n=13) were dominant. Susceptibility to penicillin, oxacillin, tetracycline, clindamycin, gentamicin, erythromycin, ciprofloxacin, and vancomycin was determined. All investigated S. aureus isolates were resistant to at least one antibiotic, and fifteen isolates were resistant to four and more antibiotics. Thirty-eight coagulase-negative staphylococci (CNS) isolates were resistant to at least one antibiotic, and seventeen to four and more antibiotics. Fifteen CNS isolates were mecA positive, and grew in the presence of 6 μg/mL oxacillin. All S. aureus isolates were mecA-negative. Arginine catabolic mobile element (ACME) was found in seven S. epidermidis isolates. Five S. epidermidis isolates harbored ica operon, ACME and were able to form biofilm. Three of them also possessed IS256 element and were mecA-positive. The expression of icaA gene was comparable in five ica-positive S. epidermidis isolates. One of six mecA positive S. epidermidis isolates was classified as sequence type (ST)155, one as ST110, and two as ST88. Two methicillin-resistant Staphylococcus epidermis (MRSE) belonged to new STs, that is, ST362, and ST363. Enterotoxin genes were found in 92% of S. aureus isolates. No enterotoxin gene was detected in analyzed CNS population. We show that ready-to-eat products are an important source of antibiotic-resistant CNS and potentially virulent strains of S. epidermidis, including genotypes undistinguishable from hospital-adapted clones.

Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: genetic markers and characterization of cellulolytic potential.

PubMed

Koeck, Daniela E; Zverlov, Vladimir V; Liebl, Wolfgang; Schwarz, Wolfgang H

2014-07-01

Clostridium thermocellum is among the most prevalent of known anaerobic cellulolytic bacteria. In this study, genetic and phenotypic variations among C. thermocellum strains isolated from different biogas plants were determined and different genotyping methods were evaluated on these isolates. At least two C. thermocellum strains were isolated independently from each of nine different biogas plants via enrichment on cellulose. Various DNA-based genotyping methods such as ribotyping, RAPD (Random Amplified Polymorphic DNA) and VNTR (Variable Number of Tandem Repeats) were applied to these isolates. One novel approach - the amplification of unknown target sequences between copies of a previously discovered Random Inserted Mobile Element (RIME) - was also tested. The genotyping method with the highest discriminatory power was found to be the amplification of the sequences between the insertion elements, where isolates from each biogas plant yielded a different band pattern. Cellulolytic potentials, optimal growth conditions and substrate spectra of all isolates were characterized to help identify phenotypic variations. Irrespective of the genotyping method used, the isolates from each individual biogas plant always exhibited identical patterns. This is suggestive of a single C. thermocellum strain exhibiting dominance in each biogas plant. The genotypic groups reflect the results of the physiological characterization of the isolates like substrate diversity and cellulase activity. Conversely, strains isolated across a range of biogas plants differed in their genotyping results and physiological properties. Both strains isolated from one biogas plant had the best specific cellulose-degrading properties and might therefore achieve superior substrate utilization yields in biogas fermenters. Copyright © 2014 Elsevier GmbH. All rights reserved.

A rapid and low noise switch from RANS to WMLES on curvilinear grids with compressible flow solvers

NASA Astrophysics Data System (ADS)

Deck, Sébastien; Weiss, Pierre-Elie; Renard, Nicolas

2018-06-01

A turbulent inflow for a rapid and low noise switch from RANS to Wall-Modelled LES on curvilinear grids with compressible flow solvers is presented. It can be embedded within the computational domain in practical applications with WMLES grids around three-dimensional geometries in a flexible zonal hybrid RANS/LES modelling context. It relies on a physics-motivated combination of Zonal Detached Eddy Simulation (ZDES) as the WMLES technique together with a Dynamic Forcing method processing the fluctuations caused by a Zonal Immersed Boundary Condition describing roughness elements. The performance in generating a physically-sound turbulent flow field with the proper mean skin friction and turbulent profiles after a short relaxation length is equivalent to more common inflow methods thanks to the generation of large-scale streamwise vorticity by the roughness elements. Comparisons in a low Mach-number zero-pressure-gradient flat-plate turbulent boundary layer up to Reθ = 6 100 reveal that the pressure field is dominated by the spurious noise caused by the synthetic turbulence methods (Synthetic Eddy Method and White Noise injection), contrary to the new low-noise approach which may be used to obtain the low-frequency component of wall pressure and reproduce its intermittent nature. The robustness of the method is tested in the flow around a three-element airfoil with WMLES in the upper boundary layer near the trailing edge of the main element. In spite of the very short relaxation distance allowed, self-sustainable resolved turbulence is generated in the outer layer with significantly less spurious noise than with the approach involving White Noise. The ZDES grid count for this latter test case is more than two orders of magnitude lower than the Wall-Resolved LES requirement and a unique mesh is involved, which is much simpler than some multiple-mesh strategies devised for WMLES or turbulent inflow.

Wetland Hydrologic Connectivity to Downstream Waters: A Classification Approach and National Assessment

EPA Science Inventory

Connectivity has become a major focus of hydrological and ecological studies. Connectivity influences fluxes between landscape elements, while isolation reduces flows between elements. Thus connectivity can be an important characteristic controlling ecosystem services. Hydrolo...

Isolation of the Chlamydomonas Regulatory Gene Nit2 by Transposon Tagging

PubMed Central

Schnell, R. A.; Lefebvre, P. A.

1993-01-01

Genetic evidence suggests that the NIT2 gene of Chlamydomonas reinhardtii encodes a positive regulator of the nitrate-assimilation pathway. To learn more about the function of the NIT2 gene product, we isolated the gene using a transposon-tagging strategy. A nit2 mutation caused by the insertion of a transposon was identified by testing spontaneous nit2 mutants for the presence of new copies of Gulliver or TOC1, transposable elements that have been identified in Chlamydomonas. In 2 of the 14 different mutants that were analyzed, a Gulliver element was found to be genetically and phenotypically associated with the nit2 mutation. Using the Gulliver element as a probe, one of the transposon-induced nit2 alleles was isolated, and a sequence adjoining the transposon was used to isolate the corresponding wild-type locus. The NIT2 gene was delimited by mapping DNA rearrangements associated with nit2 mutations and mutant rescue by genetic transformation. The NIT2 gene encodes a 6-kb transcript that was not detected in cells grown in the presence of ammonium. Likewise, NIT2-dependent genes are repressed in ammonium-grown cells. These results suggest that repression of the NIT2 gene may mediate metabolite repression of the nitrate assimilation pathway in Chlamydomonas. PMID:8394263

Single Cell Genome Amplification Accelerates Identification of the Apratoxin Biosynthetic Pathway from a Complex Microbial Assemblage

PubMed Central

Grindberg, Rashel V.; Ishoey, Thomas; Brinza, Dumitru; Esquenazi, Eduardo; Coates, R. Cameron; Liu, Wei-ting; Gerwick, Lena; Dorrestein, Pieter C.; Pevzner, Pavel; Lasken, Roger; Gerwick, William H.

2011-01-01

Filamentous marine cyanobacteria are extraordinarily rich sources of structurally novel, biomedically relevant natural products. To understand their biosynthetic origins as well as produce increased supplies and analog molecules, access to the clustered biosynthetic genes that encode for the assembly enzymes is necessary. Complicating these efforts is the universal presence of heterotrophic bacteria in the cell wall and sheath material of cyanobacteria obtained from the environment and those grown in uni-cyanobacterial culture. Moreover, the high similarity in genetic elements across disparate secondary metabolite biosynthetic pathways renders imprecise current gene cluster targeting strategies and contributes sequence complexity resulting in partial genome coverage. Thus, it was necessary to use a dual-method approach of single-cell genomic sequencing based on multiple displacement amplification (MDA) and metagenomic library screening. Here, we report the identification of the putative apratoxin. A biosynthetic gene cluster, a potent cancer cell cytotoxin with promise for medicinal applications. The roughly 58 kb biosynthetic gene cluster is composed of 12 open reading frames and has a type I modular mixed polyketide synthase/nonribosomal peptide synthetase (PKS/NRPS) organization and features loading and off-loading domain architecture never previously described. Moreover, this work represents the first successful isolation of a complete biosynthetic gene cluster from Lyngbya bouillonii, a tropical marine cyanobacterium renowned for its production of diverse bioactive secondary metabolites. PMID:21533272

Molecular cloning and tissue-specific transcriptional regulation of the first peroxidase family member, Udp1, in stinging nettle (Urtica dioica).

PubMed

Douroupi, Triantafyllia G; Papassideri, Issidora S; Stravopodis, Dimitrios J; Margaritis, Lukas H

2005-12-05

A full-length cDNA clone, designated Udp1, was isolated from Urtica dioica (stinging nettle), using a polymerase chain reaction based strategy. The putative Udp1 protein is characterized by a cleavable N-terminal signal sequence, likely responsible for the rough endoplasmic reticulum entry and a 310 amino acids mature protein, containing all the important residues, which are evolutionary conserved among different members of the plant peroxidase family. A unique structural feature of the Udp1 peroxidase is defined into the short carboxyl-terminal extension, which could be associated with the vacuolar targeting process. Udp1 peroxidase is differentially regulated at the transcriptional level and is specifically expressed in the roots. Interestingly, wounding and ultraviolet radiation stress cause an ectopic induction of the Udp1 gene expression in the aerial parts of the plant. A genomic DNA fragment encoding the Udp1 peroxidase was also cloned and fully sequenced, revealing a structural organization of three exons and two introns. The phylogenetic relationships of the Udp1 protein to the Arabidopsis thaliana peroxidase family members were also examined and, in combination with the homology modelling approach, dictated the presence of distinct structural elements, which could be specifically involved in the determination of substrate recognition and subcellular localization of the Udp1 peroxidase.

Stability Analysis of Roughness Array Wake in a High-Speed Boundary Layer

NASA Technical Reports Server (NTRS)

Choudhari, Meelan; Li, Fei; Edwards, Jack

2009-01-01

Computations are performed to examine the effects of both an isolated and spanwise periodic array of trip elements on a high-speed laminar boundary layer, so as to identify the potential physical mechanisms underlying an earlier transition to turbulence as a result of the trip(s). In the context of a 0.333 scale model of the Hyper-X forebody configuration, the time accurate solution for an array of ramp shaped trips asymptotes to a stationary field at large times, indicating the likely absence of a strong absolute instability in the mildly separated flow due to the trips. A prominent feature of the wake flow behind the trip array corresponds to streamwise streaks that are further amplified in passing through the compression corner. Stability analysis of the streaks using a spatial, 2D eigenvalue approach reveals the potential for a strong convective instability that might explain the earlier onset of turbulence within the array wake. The dominant modes of streak instability are primarily sustained by the spanwise gradients associated with the streaks and lead to integrated logarithmic amplification factors (N factors) approaching 7 over the first ramp of the scaled Hyper-X forebody, and substantially higher over the second ramp. Additional computations are presented to shed further light on the effects of both trip geometry and the presence of a compression corner on the evolution of the streaks.

Dissemination of CTX-M-15 β-Lactamase Genes Carried on Inc FI and FII Plasmids among Clinical Isolates of Escherichia coli in a University Hospital in Istanbul, Turkey▿

PubMed Central

Gonullu, Nevriye; Aktas, Zerrin; Kayacan, Cigdem Bal; Salcioglu, Melek; Carattoli, Alessandra; Yong, Dong Eun; Walsh, Timothy R.

2008-01-01

The CTX-M-1 group was found in 86.8% of the Escherichia coli isolates from Istanbul. A subset study revealed all isolates carrying blaCTX-M-15 genes flanked by the insertion element ISEcp1. Plasmid typing of transconjugates carrying blaCTX-M-15 showed that most isolates belonged to the Inc/rep FII group but that one isolate also belonged to the FI group. PMID:18184851

Plastic degrading fungi Trichoderma viride and Aspergillus nomius isolated from local landfill soil in Medan

NASA Astrophysics Data System (ADS)

Munir, E.; Harefa, R. S. M.; Priyani, N.; Suryanto, D.

2018-03-01

Plastic is a naturally recalcitrant polymer, once it enters the environment, it will remain there for many years. Accumulation of plastic as wastes in the environment poses a serious problem and causes an ecological threat. Alternative strategies to reduce accumulation of plastic wastes have been initiated and implemented from a different aspect including from microbiological view point. The study to obtain potential fungi in degrading plastic molecule has been initiated in our laboratory. Low density polyethylene (LDPE) plastic was used as a tested material. Candidate fungi were isolated from local landfill soil. The fungi were cultured in mineral salt medium broth containing LDPE powder. Two of nine isolates showed best growth response in broth media containing LDPE. These isolates (RH03 and RH06) were used in degradation test. Results showed that isolate RH03 and RH06 reduced the weight of LDPE film by 5.13% and 6.63%, respectively after 45 days of cultivation. The tensile strength of treated film even reduced significantly by 58% and 40% of each isolate. Analyses of electron micrograph exhibited grove ands rough were formed on the surface of LDPE film. These were not found in the untreated film. Furthermore, molecular analysis through polymerase chain reaction and DNA sequencing indicated that RH03 is Trichoderma viride and RH06 is Aspergillus nomius with 97% and 96% similarities, respectively.

Effects of Small-scale Vegetation-related Roughness on Overland Flow and Infiltration in Semi-arid Grassland and Shrublands

NASA Astrophysics Data System (ADS)

Bedford, D.

2012-12-01

We studied the effects of small-scale roughness on overland flow/runoff and the spatial pattern of infiltration. Our semi-arid sites include a grassland and shrubland in Central New Mexico and a shrubland in the Eastern Mojave Desert. Vegetation exerts strong controls on small-scale surface roughness in the form of plant mounds and other microtopography such as depressions and rills. We quantified the effects of densely measured soil surface heterogeneity using model simulations of runoff and infiltration. Microtopographic roughness associated with vegetation patterns, on the scale of mm-cm's in height, has a larger effect on runoff and infiltration than spatially correlated saturated conductivity. The magnitude and pattern of the effect of roughness largely depends on the vegetation and landform type, and rainfall depth and intensity. In all cases, runoff and infiltration amount and patterns were most strongly affected by depression storage. In the grassland we studied in central New Mexico, soil surface roughness had a large effect on runoff and infiltration where vegetation mounds coalesced, forming large storage volumes that require filling and overtopping in order for overland flow to concentrate into runoff. Total discharge over rough surfaces was reduced 100-200% compared to simulations in which no surface roughness was accounted for. For shrublands, total discharge was reduced 30-40% by microtopography on gently sloping alluvial fans and only 10-20% on steep hillslopes. This difference is largely due to the lack of storage elements on steep slopes. For our sites, we found that overland flow can increase infiltration by up to 2.5 times the total rainfall by filling depressions. The redistribution of water via overland flow can affect up to 20% of an area but varies with vegetation type and landform. This infiltration augmentation by overland flow tends to occur near the edges of vegetation canopies where overland flow depths are deep and infiltration rates are moderate. Infiltration augmentation is greatest in microtopographic depressions and flow threads. These results show that some vegetation-landform settings are efficient at trapping and concentrating the primary limiting resource, and demonstrate the importance of micro-scale soil characteristics for the ecohydrologic function of semi-arid environments. Since other essential attributes for plant ecosystems, such as nutrients, likely co-vary with water availability, further research is needed to elucidate ecosystem dynamics that may lead to self-organized behavior and determine thresholds for ecosystem stability.

A Combined Negative and Positive Enrichment Assay for Cancer Cells Isolation and Purification.

PubMed

Cheng, Boran; Wang, Shuyi; Chen, Yuanyuan; Fang, Yuan; Chen, Fangfang; Wang, Zhenmeng; Xiong, Bin

2016-02-01

Cancer cells that detach from solid tumor and circulate in the peripheral blood (CTCs) have been considered as a new "biomarker" for the detection and characterization of cancers. However, isolating and detecting cancer cells from the cancer patient peripheral blood have been technically challenging, owing to the small sub-population of CTCs (a few to hundreds per milliliter). Here we demonstrate a simple and efficient cancer cells isolation and purification method. A biocompatible and surface roughness controllable TiO2 nanofilm was deposited onto a glass slide to achieve enhanced topographic interactions with nanoscale cellular surface components, again, anti-CD45 (a leukocyte common antigen) and anti-EpCAM (epithelial cell adhesion molecule) were then coated onto the surface of the nanofilm for advance depletion of white blood cells (WBCs) and specific isolation of CTCs, respectively. Comparing to the conventional positive enrichment technology, this method exhibited excellent biocompatibility and equally high capture efficiency. Moreover, the maximum number of background cells (WBCs) was removed, and viable and functional cancer cells were isolated with high purity. Utilizing the horizontally packed TiO2 nanofilm improved pure CTC-capture through combining cell-capture-agent and cancer cell-preferred nanoscale topography, which represented a new method capable of obtaining biologically functional CTCs for subsequent molecular analysis. © The Author(s) 2014.

Microscale localization and isolation of light emitting imperfections in monocrystalline silicon solar cells

NASA Astrophysics Data System (ADS)

Gajdoš, Adam; Škvarenina, Lubomír.; Škarvada, Pavel; Macků, Robert

2017-12-01

An imperfections or defects may appear in fabricated monocrystalline solar cells. These microstructural imperfections could have impact on the parameters of whole solar cell. The research is divided into two parts, firstly, the detection and localization defects by using several techniques including current-voltage measurement, scanning probe microscopy (SPM), scanning electron microscope (SEM) and electroluminescence. Secondly, the defects isolation by a focused ion beam (FIB) milling and impact of a milling process on solar cells. The defect detection is realized by I-V measurement under reverse biased sample. For purpose of localization, advantage of the fact that defects or imperfections in silicon solar cells emit the visible and near infrared electroluminescence under reverse biased voltage is taken, and CCD camera measurement for macroscopic localization of these spots is applied. After rough macroscopic localization, microscopic localization by scanning probe microscopy combined with a photomultiplier (shadow mapping) is performed. Defect isolation is performed by a SEM equipped with the FIB instrument. FIB uses a beam of gallium ions which modifies crystal structure of a material and may affect parameters of solar cell. As a result, it is interesting that current in reverse biased sample with isolated defect is smaller approximately by 2 orders than current before isolation process.