Validation of the thermal transport model used for ITER startup scenario predictions with DIII-D experimental data

DOE PAGES

Casper, T. A.; Meyer, W. H.; Jackson, G. L.; ...

2010-12-08

We are exploring characteristics of ITER startup scenarios in similarity experiments conducted on the DIII-D Tokamak. In these experiments, we have validated scenarios for the ITER current ramp up to full current and developed methods to control the plasma parameters to achieve stability. Predictive simulations of ITER startup using 2D free-boundary equilibrium and 1D transport codes rely on accurate estimates of the electron and ion temperature profiles that determine the electrical conductivity and pressure profiles during the current rise. Here we present results of validation studies that apply the transport model used by the ITER team to DIII-D discharge evolutionmore » and comparisons with data from our similarity experiments.« less

Global adjoint tomography: First-generation model

DOE PAGES

Bozdag, Ebru; Peter, Daniel; Lefebvre, Matthieu; ...

2016-09-22

We present the first-generation global tomographic model constructed based on adjoint tomography, an iterative full-waveform inversion technique. Synthetic seismograms were calculated using GPU-accelerated spectral-element simulations of global seismic wave propagation, accommodating effects due to 3-D anelastic crust & mantle structure, topography & bathymetry, the ocean load, ellipticity, rotation, and self-gravitation. Fréchet derivatives were calculated in 3-D anelastic models based on an adjoint-state method. The simulations were performed on the Cray XK7 named ‘Titan’, a computer with 18 688 GPU accelerators housed at Oak Ridge National Laboratory. The transversely isotropic global model is the result of 15 tomographic iterations, which systematicallymore » reduced differences between observed and simulated three-component seismograms. Our starting model combined 3-D mantle model S362ANI with 3-D crustal model Crust2.0. We simultaneously inverted for structure in the crust and mantle, thereby eliminating the need for widely used ‘crustal corrections’. We used data from 253 earthquakes in the magnitude range 5.8 ≤ M w ≤ 7.0. We started inversions by combining ~30 s body-wave data with ~60 s surface-wave data. The shortest period of the surface waves was gradually decreased, and in the last three iterations we combined ~17 s body waves with ~45 s surface waves. We started using 180 min long seismograms after the 12th iteration and assimilated minor- and major-arc body and surface waves. The 15th iteration model features enhancements of well-known slabs, an enhanced image of the Samoa/Tahiti plume, as well as various other plumes and hotspots, such as Caroline, Galapagos, Yellowstone and Erebus. Furthermore, we see clear improvements in slab resolution along the Hellenic and Japan Arcs, as well as subduction along the East of Scotia Plate, which does not exist in the starting model. Point-spread function tests demonstrate that we are approaching the resolution of continental-scale studies in some areas, for example, underneath Yellowstone. Here, this is a consequence of our multiscale smoothing strategy in which we define our smoothing operator as a function of the approximate Hessian kernel, thereby smoothing gradients less wherever we have good ray coverage, such as underneath North America.« less

Global adjoint tomography: First-generation model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bozdag, Ebru; Peter, Daniel; Lefebvre, Matthieu

We present the first-generation global tomographic model constructed based on adjoint tomography, an iterative full-waveform inversion technique. Synthetic seismograms were calculated using GPU-accelerated spectral-element simulations of global seismic wave propagation, accommodating effects due to 3-D anelastic crust & mantle structure, topography & bathymetry, the ocean load, ellipticity, rotation, and self-gravitation. Fréchet derivatives were calculated in 3-D anelastic models based on an adjoint-state method. The simulations were performed on the Cray XK7 named ‘Titan’, a computer with 18 688 GPU accelerators housed at Oak Ridge National Laboratory. The transversely isotropic global model is the result of 15 tomographic iterations, which systematicallymore » reduced differences between observed and simulated three-component seismograms. Our starting model combined 3-D mantle model S362ANI with 3-D crustal model Crust2.0. We simultaneously inverted for structure in the crust and mantle, thereby eliminating the need for widely used ‘crustal corrections’. We used data from 253 earthquakes in the magnitude range 5.8 ≤ M w ≤ 7.0. We started inversions by combining ~30 s body-wave data with ~60 s surface-wave data. The shortest period of the surface waves was gradually decreased, and in the last three iterations we combined ~17 s body waves with ~45 s surface waves. We started using 180 min long seismograms after the 12th iteration and assimilated minor- and major-arc body and surface waves. The 15th iteration model features enhancements of well-known slabs, an enhanced image of the Samoa/Tahiti plume, as well as various other plumes and hotspots, such as Caroline, Galapagos, Yellowstone and Erebus. Furthermore, we see clear improvements in slab resolution along the Hellenic and Japan Arcs, as well as subduction along the East of Scotia Plate, which does not exist in the starting model. Point-spread function tests demonstrate that we are approaching the resolution of continental-scale studies in some areas, for example, underneath Yellowstone. Here, this is a consequence of our multiscale smoothing strategy in which we define our smoothing operator as a function of the approximate Hessian kernel, thereby smoothing gradients less wherever we have good ray coverage, such as underneath North America.« less

Research on complex 3D tree modeling based on L-system

NASA Astrophysics Data System (ADS)

Gang, Chen; Bin, Chen; Yuming, Liu; Hui, Li

2018-03-01

L-system as a fractal iterative system could simulate complex geometric patterns. Based on the field observation data of trees and knowledge of forestry experts, this paper extracted modeling constraint rules and obtained an L-system rules set. Using the self-developed L-system modeling software the L-system rule set was parsed to generate complex tree 3d models.The results showed that the geometrical modeling method based on l-system could be used to describe the morphological structure of complex trees and generate 3D tree models.

Adjoint tomography of Europe

NASA Astrophysics Data System (ADS)

Zhu, H.; Bozdag, E.; Peter, D. B.; Tromp, J.

2010-12-01

We use spectral-element and adjoint methods to image crustal and upper mantle heterogeneity in Europe. The study area involves the convergent boundaries of the Eurasian, African and Arabian plates and the divergent boundary between the Eurasian and North American plates, making the tectonic structure of this region complex. Our goal is to iteratively fit observed seismograms and improve crustal and upper mantle images by taking advantage of 3D forward and inverse modeling techniques. We use data from 200 earthquakes with magnitudes between 5 and 6 recorded by 262 stations provided by ORFEUS. Crustal model Crust2.0 combined with mantle model S362ANI comprise the initial 3D model. Before the iterative adjoint inversion, we determine earthquake source parameters in the initial 3D model by using 3D Green functions and their Fréchet derivatives with respect to the source parameters (i.e., centroid moment tensor and location). The updated catalog is used in the subsequent structural inversion. Since we concentrate on upper mantle structures which involve anisotropy, transversely isotropic (frequency-dependent) traveltime sensitivity kernels are used in the iterative inversion. Taking advantage of the adjoint method, we use as many measurements as can obtain based on comparisons between observed and synthetic seismograms. FLEXWIN (Maggi et al., 2009) is used to automatically select measurement windows which are analyzed based on a multitaper technique. The bandpass ranges from 15 second to 150 second. Long-period surface waves and short-period body waves are combined in source relocations and structural inversions. A statistical assessments of traveltime anomalies and logarithmic waveform differences is used to characterize the inverted sources and structure.

Acceleration of image-based resolution modelling reconstruction using an expectation maximization nested algorithm.

PubMed

Angelis, G I; Reader, A J; Markiewicz, P J; Kotasidis, F A; Lionheart, W R; Matthews, J C

2013-08-07

Recent studies have demonstrated the benefits of a resolution model within iterative reconstruction algorithms in an attempt to account for effects that degrade the spatial resolution of the reconstructed images. However, these algorithms suffer from slower convergence rates, compared to algorithms where no resolution model is used, due to the additional need to solve an image deconvolution problem. In this paper, a recently proposed algorithm, which decouples the tomographic and image deconvolution problems within an image-based expectation maximization (EM) framework, was evaluated. This separation is convenient, because more computational effort can be placed on the image deconvolution problem and therefore accelerate convergence. Since the computational cost of solving the image deconvolution problem is relatively small, multiple image-based EM iterations do not significantly increase the overall reconstruction time. The proposed algorithm was evaluated using 2D simulations, as well as measured 3D data acquired on the high-resolution research tomograph. Results showed that bias reduction can be accelerated by interleaving multiple iterations of the image-based EM algorithm solving the resolution model problem, with a single EM iteration solving the tomographic problem. Significant improvements were observed particularly for voxels that were located on the boundaries between regions of high contrast within the object being imaged and for small regions of interest, where resolution recovery is usually more challenging. Minor differences were observed using the proposed nested algorithm, compared to the single iteration normally performed, when an optimal number of iterations are performed for each algorithm. However, using the proposed nested approach convergence is significantly accelerated enabling reconstruction using far fewer tomographic iterations (up to 70% fewer iterations for small regions). Nevertheless, the optimal number of nested image-based EM iterations is hard to be defined and it should be selected according to the given application.

Joint Inversion of 3d Mt/gravity/magnetic at Pisagua Fault.

NASA Astrophysics Data System (ADS)

Bascur, J.; Saez, P.; Tapia, R.; Humpire, M.

2017-12-01

This work shows the results of a joint inversion at Pisagua Fault using 3D Magnetotellurics (MT), gravity and regional magnetic data. The MT survey has a poor coverage of study area with only 21 stations; however, it allows to detect a low resistivity zone aligned with the Pisagua Fault trace that it is interpreted as a damage zone. The integration of gravity and magnetic data, which have more dense sampling and coverage, adds more detail and resolution to the detected low resistivity structure and helps to improve the structure interpretation using the resulted models (density, magnetic-susceptibility and electrical resistivity). The joint inversion process minimizes a multiple target function which includes the data misfit, model roughness and coupling norms (crossgradient and direct relations) for all geophysical methods considered (MT, gravity and magnetic). This process is solved iteratively using the Gauss-Newton method which updates the model of each geophysical method improving its individual data misfit, model roughness and the coupling with the other geophysical models. For solving the model updates of magnetic and gravity methods were developed dedicated 3D inversion software codes which include the coupling norms with additionals geophysical parameters. The model update of the 3D MT is calculated using an iterative method which sequentially filters the priority model and the output model of a single 3D MT inversion process for obtaining the resistivity model coupled solution with the gravity and magnetic methods.

Iterative methods for 3D implicit finite-difference migration using the complex Padé approximation

NASA Astrophysics Data System (ADS)

Costa, Carlos A. N.; Campos, Itamara S.; Costa, Jessé C.; Neto, Francisco A.; Schleicher, Jörg; Novais, Amélia

2013-08-01

Conventional implementations of 3D finite-difference (FD) migration use splitting techniques to accelerate performance and save computational cost. However, such techniques are plagued with numerical anisotropy that jeopardises the correct positioning of dipping reflectors in the directions not used for the operator splitting. We implement 3D downward continuation FD migration without splitting using a complex Padé approximation. In this way, the numerical anisotropy is eliminated at the expense of a computationally more intensive solution of a large-band linear system. We compare the performance of the iterative stabilized biconjugate gradient (BICGSTAB) and that of the multifrontal massively parallel direct solver (MUMPS). It turns out that the use of the complex Padé approximation not only stabilizes the solution, but also acts as an effective preconditioner for the BICGSTAB algorithm, reducing the number of iterations as compared to the implementation using the real Padé expansion. As a consequence, the iterative BICGSTAB method is more efficient than the direct MUMPS method when solving a single term in the Padé expansion. The results of both algorithms, here evaluated by computing the migration impulse response in the SEG/EAGE salt model, are of comparable quality.

Physics and technology in the ion-cyclotron range of frequency on Tore Supra and TITAN test facility: implication for ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Litaudon, X; Bernard, J. M.; Colas, L.

2013-01-01

To support the design of an ITER ion-cyclotron range of frequency heating (ICRH) system and to mitigate risks of operation in ITER, CEA has initiated an ambitious Research & Development program accompanied by experiments on Tore Supra or test-bed facility together with a significant modelling effort. The paper summarizes the recent results in the following areas: Comprehensive characterization (experiments and modelling) of a new Faraday screen concept tested on the Tore Supra antenna. A new model is developed for calculating the ICRH sheath rectification at the antenna vicinity. The model is applied to calculate the local heat flux on Toremore » Supra and ITER ICRH antennas. Full-wave modelling of ITER ICRH heating and current drive scenarios with the EVE code. With 20 MW of power, a current of 400 kA could be driven on axis in the DT scenario. Comparison between DT and DT(3He) scenario is given for heating and current drive efficiencies. First operation of CW test-bed facility, TITAN, designed for ITER ICRH components testing and could host up to a quarter of an ITER antenna. R&D of high permittivity materials to improve load of test facilities to better simulate ITER plasma antenna loading conditions.« less

3-D Inhomogeous Radiative Transfer Model using a Planar-stratified Forward RT Model and Horizontal Perturbation Series

NASA Astrophysics Data System (ADS)

Zhang, K.; Gasiewski, A. J.

2017-12-01

A horizontally inhomogeneous unified microwave radiative transfer (HI-UMRT) model based upon a nonspherical hydrometeor scattering model is being developed at the University of Colorado at Boulder to facilitate forward radiative simulations for 3-dimensionally inhomogeneous clouds in severe weather. The HI-UMRT 3-D analytical solution is based on incorporating a planar-stratified 1-D UMRT algorithm within a horizontally inhomogeneous iterative perturbation scheme. Single-scattering parameters are computed using the Discrete Dipole Scattering (DDSCAT v7.3) program for hundreds of carefully selected nonspherical complex frozen hydrometeors from the NASA/GSFC DDSCAT database. The required analytic factorization symmetry of transition matrix in a normalized RT equation was analytically proved and validated numerically using the DDSCAT-based full Stokes matrix of randomly oriented hydrometeors. The HI-UMRT model thus inherits the properties of unconditional numerical stability, efficiency, and accuracy from the UMRT algorithm and provides a practical 3-D two-Stokes parameter radiance solution with Jacobian to be used within microwave retrievals and data assimilation schemes. In addition, a fast forward radar reflectivity operator with Jacobian based on DDSCAT backscatter efficiency computed for large hydrometeors is incorporated into the HI-UMRT model to provide applicability to active radar sensors. The HI-UMRT will be validated strategically at two levels: 1) intercomparison of brightness temperature (Tb) results with those of several 1-D and 3-D RT models, including UMRT, CRTM and Monte Carlo models, 2) intercomparison of Tb with observed data from combined passive and active spaceborne sensors (e.g. GPM GMI and DPR). The precise expression for determining the required number of 3-D iterations to achieve an error bound on the perturbation solution will be developed to facilitate the numerical verification of the HI-UMRT code complexity and computation performance.

Three-dimensional interpretation of TEM soundings

NASA Astrophysics Data System (ADS)

Barsukov, P. O.; Fainberg, E. B.

2013-07-01

We describe the approach to the interpretation of electromagnetic (EM) sounding data which iteratively adjusts the three-dimensional (3D) model of the environment by local one-dimensional (1D) transformations and inversions and reconstructs the geometrical skeleton of the model. The final 3D inversion is carried out with the minimal number of the sought parameters. At each step of the interpretation, the model of the medium is corrected according to the geological information. The practical examples of the suggested method are presented.

A validation test for Adagio through replication of Big Hill and Bayou Choctaw JAS3D models.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Park, Byoung Yoon

2013-06-01

JAS3D, a three dimensional iterative solid mechanics code, has been used for structural analyses for the Strategic Petroleum Reserve system since the 1990s. JAS3D is no longer supported by Sandia National Laboratories, and has been replaced by Adagio. To validate the transition from JAS3D to Adagio, the existing JAS3D input decks and user subroutines for Bayou Choctaw and Big Hill models were converted for use with Adagio. The calculation results from the Adagio runs are compared to the JAS3D. Since the Adagio results are very similar to the JAS3D results, Adagio is judged to be performing satisfactorily.

Seismic tomography of the southern California crust based on spectral-element and adjoint methods

NASA Astrophysics Data System (ADS)

Tape, Carl; Liu, Qinya; Maggi, Alessia; Tromp, Jeroen

2010-01-01

We iteratively improve a 3-D tomographic model of the southern California crust using numerical simulations of seismic wave propagation based on a spectral-element method (SEM) in combination with an adjoint method. The initial 3-D model is provided by the Southern California Earthquake Center. The data set comprises three-component seismic waveforms (i.e. both body and surface waves), filtered over the period range 2-30 s, from 143 local earthquakes recorded by a network of 203 stations. Time windows for measurements are automatically selected by the FLEXWIN algorithm. The misfit function in the tomographic inversion is based on frequency-dependent multitaper traveltime differences. The gradient of the misfit function and related finite-frequency sensitivity kernels for each earthquake are computed using an adjoint technique. The kernels are combined using a source subspace projection method to compute a model update at each iteration of a gradient-based minimization algorithm. The inversion involved 16 iterations, which required 6800 wavefield simulations. The new crustal model, m16, is described in terms of independent shear (VS) and bulk-sound (VB) wave speed variations. It exhibits strong heterogeneity, including local changes of +/-30 per cent with respect to the initial 3-D model. The model reveals several features that relate to geological observations, such as sedimentary basins, exhumed batholiths, and contrasting lithologies across faults. The quality of the new model is validated by quantifying waveform misfits of full-length seismograms from 91 earthquakes that were not used in the tomographic inversion. The new model provides more accurate synthetic seismograms that will benefit seismic hazard assessment.

Iterating between Tools to Create and Edit Visualizations.

PubMed

Bigelow, Alex; Drucker, Steven; Fisher, Danyel; Meyer, Miriah

2017-01-01

A common workflow for visualization designers begins with a generative tool, like D3 or Processing, to create the initial visualization; and proceeds to a drawing tool, like Adobe Illustrator or Inkscape, for editing and cleaning. Unfortunately, this is typically a one-way process: once a visualization is exported from the generative tool into a drawing tool, it is difficult to make further, data-driven changes. In this paper, we propose a bridge model to allow designers to bring their work back from the drawing tool to re-edit in the generative tool. Our key insight is to recast this iteration challenge as a merge problem - similar to when two people are editing a document and changes between them need to reconciled. We also present a specific instantiation of this model, a tool called Hanpuku, which bridges between D3 scripts and Illustrator. We show several examples of visualizations that are iteratively created using Hanpuku in order to illustrate the flexibility of the approach. We further describe several hypothetical tools that bridge between other visualization tools to emphasize the generality of the model.

WARP3D-Release 10.8: Dynamic Nonlinear Analysis of Solids using a Preconditioned Conjugate Gradient Software Architecture

NASA Technical Reports Server (NTRS)

Koppenhoefer, Kyle C.; Gullerud, Arne S.; Ruggieri, Claudio; Dodds, Robert H., Jr.; Healy, Brian E.

1998-01-01

This report describes theoretical background material and commands necessary to use the WARP3D finite element code. WARP3D is under continuing development as a research code for the solution of very large-scale, 3-D solid models subjected to static and dynamic loads. Specific features in the code oriented toward the investigation of ductile fracture in metals include a robust finite strain formulation, a general J-integral computation facility (with inertia, face loading), an element extinction facility to model crack growth, nonlinear material models including viscoplastic effects, and the Gurson-Tver-gaard dilatant plasticity model for void growth. The nonlinear, dynamic equilibrium equations are solved using an incremental-iterative, implicit formulation with full Newton iterations to eliminate residual nodal forces. The history integration of the nonlinear equations of motion is accomplished with Newmarks Beta method. A central feature of WARP3D involves the use of a linear-preconditioned conjugate gradient (LPCG) solver implemented in an element-by-element format to replace a conventional direct linear equation solver. This software architecture dramatically reduces both the memory requirements and CPU time for very large, nonlinear solid models since formation of the assembled (dynamic) stiffness matrix is avoided. Analyses thus exhibit the numerical stability for large time (load) steps provided by the implicit formulation coupled with the low memory requirements characteristic of an explicit code. In addition to the much lower memory requirements of the LPCG solver, the CPU time required for solution of the linear equations during each Newton iteration is generally one-half or less of the CPU time required for a traditional direct solver. All other computational aspects of the code (element stiffnesses, element strains, stress updating, element internal forces) are implemented in the element-by- element, blocked architecture. This greatly improves vectorization of the code on uni-processor hardware and enables straightforward parallel-vector processing of element blocks on multi-processor hardware.

3D Printing: Exploring Capabilities

ERIC Educational Resources Information Center

Samuels, Kyle; Flowers, Jim

2015-01-01

As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

Material Surface Damage under High Pulse Loads Typical for ELM Bursts and Disruptions in ITER

NASA Astrophysics Data System (ADS)

Landman, I. S.; Pestchanyi, S. E.; Safronov, V. M.; Bazylev, B. N.; Garkusha, I. E.

The divertor armour material for the tokamak ITER will probably be carbon manufactured as fibre composites (CFC) and tungsten as either brush-like structures or thin plates. Disruptive pulse loads where the heat deposition Q may reach 102 MJ/m 2 on a time scale Ïä of 3 ms, or operation in the ELMy H-mode at repetitive loads with Q âe 1/4 3 MJ/m2 and Ïä âe 1/4 0.3 ms, deteriorate armour performance. This work surveys recent numerical and experimental investigations of erosion mechanisms at these off-normal regimes carried out at FZK, TRINITI, and IPP-Kharkov. The modelling uses the anisotropic thermomechanics code PEGASUS-3D for the simulation of CFC brittle destruction, the surface melt motion code MEMOS-1.5D for tungsten targets, and the radiation-magnetohydrodynamics code FOREV-2D for calculating the plasma impact and simulating the heat loads for the ITER regime. Experiments aimed at validating these codes are being carried out at the plasma gun facilities MK-200UG, QSPA-T, and QSPA-Kh50 which produce powerful streams of hydrogen plasma with Q = 10–30 MJ/m2 and Ïä = 0.03–0.5 ms. Essential results are, for CFC targets, the experiments at high heat loads and the development of a local overheating model incorporated in PEGASUS-3D, and for the tungsten targets the analysis of evaporation- and melt motion erosion on the base of MEMOS-1.5D calculations for repetitive ELMs.

PROGRESS TOWARDS NEXT GENERATION, WAVEFORM BASED THREE-DIMENSIONAL MODELS AND METRICS TO IMPROVE NUCLEAR EXPLOSION MONITORING IN THE MIDDLE EAST

DOE Office of Scientific and Technical Information (OSTI.GOV)

Savage, B; Peter, D; Covellone, B

2009-07-02

Efforts to update current wave speed models of the Middle East require a thoroughly tested database of sources and recordings. Recordings of seismic waves traversing the region from Tibet to the Red Sea will be the principal metric in guiding improvements to the current wave speed model. Precise characterizations of the earthquakes, specifically depths and faulting mechanisms, are essential to avoid mapping source errors into the refined wave speed model. Errors associated with the source are manifested in amplitude and phase changes. Source depths and paths near nodal planes are particularly error prone as small changes may severely affect themore » resulting wavefield. Once sources are quantified, regions requiring refinement will be highlighted using adjoint tomography methods based on spectral element simulations [Komatitsch and Tromp (1999)]. An initial database of 250 regional Middle Eastern events from 1990-2007, was inverted for depth and focal mechanism using teleseismic arrivals [Kikuchi and Kanamori (1982)] and regional surface and body waves [Zhao and Helmberger (1994)]. From this initial database, we reinterpreted a large, well recorded subset of 201 events through a direct comparison between data and synthetics based upon a centroid moment tensor inversion [Liu et al. (2004)]. Evaluation was done using both a 1D reference model [Dziewonski and Anderson (1981)] at periods greater than 80 seconds and a 3D model [Kustowski et al. (2008)] at periods of 25 seconds and longer. The final source reinterpretations will be within the 3D model, as this is the initial starting point for the adjoint tomography. Transitioning from a 1D to 3D wave speed model shows dramatic improvements when comparisons are done at shorter periods, (25 s). Synthetics from the 1D model were created through mode summations while those from the 3D simulations were created using the spectral element method. To further assess errors in source depth and focal mechanism, comparisons between the three methods were made. These comparisons help to identify problematic stations and sources which may bias the final solution. Estimates of standard errors were generated for each event's source depth and focal mechanism to identify poorly constrained events. A final, well characterized set of sources and stations will be then used to iteratively improve the wave speed model of the Middle East. After a few iterations during the adjoint inversion process, the sources will be reexamined and relocated to further reduce mapping of source errors into structural features. Finally, efforts continue in developing the infrastructure required to 'quickly' generate event kernels at the n-th iteration and invert for a new, (n+1)-th, wave speed model of the Middle East. While development of the infrastructure proceeds, initial tests using a limited number of events shows the 3D model, while showing vast improvement compared to the 1D model, still requires substantial modifications. Employing our new, full source set and iterating the adjoint inversions at successively shorter periods will lead to significant changes and refined wave speed structures of the Middle East.« less

Fast inversion of gravity data using the symmetric successive over-relaxation (SSOR) preconditioned conjugate gradient algorithm

NASA Astrophysics Data System (ADS)

Meng, Zhaohai; Li, Fengting; Xu, Xuechun; Huang, Danian; Zhang, Dailei

2017-02-01

The subsurface three-dimensional (3D) model of density distribution is obtained by solving an under-determined linear equation that is established by gravity data. Here, we describe a new fast gravity inversion method to recover a 3D density model from gravity data. The subsurface will be divided into a large number of rectangular blocks, each with an unknown constant density. The gravity inversion method introduces a stabiliser model norm with a depth weighting function to produce smooth models. The depth weighting function is combined with the model norm to counteract the skin effect of the gravity potential field. As the numbers of density model parameters is NZ (the number of layers in the vertical subsurface domain) times greater than the observed gravity data parameters, the inverse density parameter is larger than the observed gravity data parameters. Solving the full set of gravity inversion equations is very time-consuming, and applying a new algorithm to estimate gravity inversion can significantly reduce the number of iterations and the computational time. In this paper, a new symmetric successive over-relaxation (SSOR) iterative conjugate gradient (CG) method is shown to be an appropriate algorithm to solve this Tikhonov cost function (gravity inversion equation). The new, faster method is applied on Gaussian noise-contaminated synthetic data to demonstrate its suitability for 3D gravity inversion. To demonstrate the performance of the new algorithm on actual gravity data, we provide a case study that includes ground-based measurement of residual Bouguer gravity anomalies over the Humble salt dome near Houston, Gulf Coast Basin, off the shore of Louisiana. A 3D distribution of salt rock concentration is used to evaluate the inversion results recovered by the new SSOR iterative method. In the test model, the density values in the constructed model coincide with the known location and depth of the salt dome.

Three dimensional iterative beam propagation method for optical waveguide devices

NASA Astrophysics Data System (ADS)

Ma, Changbao; Van Keuren, Edward

2006-10-01

The finite difference beam propagation method (FD-BPM) is an effective model for simulating a wide range of optical waveguide structures. The classical FD-BPMs are based on the Crank-Nicholson scheme, and in tridiagonal form can be solved using the Thomas method. We present a different type of algorithm for 3-D structures. In this algorithm, the wave equation is formulated into a large sparse matrix equation which can be solved using iterative methods. The simulation window shifting scheme and threshold technique introduced in our earlier work are utilized to overcome the convergence problem of iterative methods for large sparse matrix equation and wide-angle simulations. This method enables us to develop higher-order 3-D wide-angle (WA-) BPMs based on Pade approximant operators and the multistep method, which are commonly used in WA-BPMs for 2-D structures. Simulations using the new methods will be compared to the analytical results to assure its effectiveness and applicability.

Building generic anatomical models using virtual model cutting and iterative registration.

PubMed

Xiao, Mei; Soh, Jung; Meruvia-Pastor, Oscar; Schmidt, Eric; Hallgrímsson, Benedikt; Sensen, Christoph W

2010-02-08

Using 3D generic models to statistically analyze trends in biological structure changes is an important tool in morphometrics research. Therefore, 3D generic models built for a range of populations are in high demand. However, due to the complexity of biological structures and the limited views of them that medical images can offer, it is still an exceptionally difficult task to quickly and accurately create 3D generic models (a model is a 3D graphical representation of a biological structure) based on medical image stacks (a stack is an ordered collection of 2D images). We show that the creation of a generic model that captures spatial information exploitable in statistical analyses is facilitated by coupling our generalized segmentation method to existing automatic image registration algorithms. The method of creating generic 3D models consists of the following processing steps: (i) scanning subjects to obtain image stacks; (ii) creating individual 3D models from the stacks; (iii) interactively extracting sub-volume by cutting each model to generate the sub-model of interest; (iv) creating image stacks that contain only the information pertaining to the sub-models; (v) iteratively registering the corresponding new 2D image stacks; (vi) averaging the newly created sub-models based on intensity to produce the generic model from all the individual sub-models. After several registration procedures are applied to the image stacks, we can create averaged image stacks with sharp boundaries. The averaged 3D model created from those image stacks is very close to the average representation of the population. The image registration time varies depending on the image size and the desired accuracy of the registration. Both volumetric data and surface model for the generic 3D model are created at the final step. Our method is very flexible and easy to use such that anyone can use image stacks to create models and retrieve a sub-region from it at their ease. Java-based implementation allows our method to be used on various visualization systems including personal computers, workstations, computers equipped with stereo displays, and even virtual reality rooms such as the CAVE Automated Virtual Environment. The technique allows biologists to build generic 3D models of their interest quickly and accurately.

Glenn-ht/bem Conjugate Heat Transfer Solver for Large-scale Turbomachinery Models

NASA Technical Reports Server (NTRS)

Divo, E.; Steinthorsson, E.; Rodriquez, F.; Kassab, A. J.; Kapat, J. S.; Heidmann, James D. (Technical Monitor)

2003-01-01

A coupled Boundary Element/Finite Volume Method temperature-forward/flux-hack algorithm is developed for conjugate heat transfer (CHT) applications. A loosely coupled strategy is adopted with each field solution providing boundary conditions for the other in an iteration seeking continuity of temperature and heat flux at the fluid-solid interface. The NASA Glenn Navier-Stokes code Glenn-HT is coupled to a 3-D BEM steady state heat conduction code developed at the University of Central Florida. Results from CHT simulation of a 3-D film-cooled blade section are presented and compared with those computed by a two-temperature approach. Also presented are current developments of an iterative domain decomposition strategy accommodating large numbers of unknowns in the BEM. The blade is artificially sub-sectioned in the span-wise direction, 3-D BEM solutions are obtained in the subdomains, and interface temperatures are averaged symmetrically when the flux is updated while the fluxes are averaged anti-symmetrically to maintain continuity of heat flux when the temperatures are updated. An initial guess for interface temperatures uses a physically-based 1-D conduction argument to provide an effective starting point and significantly reduce iteration. 2-D and 3-D results show the process converges efficiently and offers substantial computational and storage savings. Future developments include a parallel multi-grid implementation of the approach under MPI for computation on PC clusters.

Improved Convergence and Robustness of USM3D Solutions on Mixed Element Grids (Invited)

NASA Technical Reports Server (NTRS)

Pandya, Mohagna J.; Diskin, Boris; Thomas, James L.; Frink, Neal T.

2015-01-01

Several improvements to the mixed-element USM3D discretization and defect-correction schemes have been made. A new methodology for nonlinear iterations, called the Hierarchical Adaptive Nonlinear Iteration Scheme (HANIS), has been developed and implemented. It provides two additional hierarchies around a simple and approximate preconditioner of USM3D. The hierarchies are a matrix-free linear solver for the exact linearization of Reynolds-averaged Navier Stokes (RANS) equations and a nonlinear control of the solution update. Two variants of the new methodology are assessed on four benchmark cases, namely, a zero-pressure gradient flat plate, a bump-in-channel configuration, the NACA 0012 airfoil, and a NASA Common Research Model configuration. The new methodology provides a convergence acceleration factor of 1.4 to 13 over the baseline solver technology.

Computed inverse MRI for magnetic susceptibility map reconstruction

PubMed Central

Chen, Zikuan; Calhoun, Vince

2015-01-01

Objective This paper reports on a computed inverse magnetic resonance imaging (CIMRI) model for reconstructing the magnetic susceptibility source from MRI data using a two-step computational approach. Methods The forward T2*-weighted MRI (T2*MRI) process is decomposed into two steps: 1) from magnetic susceptibility source to fieldmap establishment via magnetization in a main field, and 2) from fieldmap to MR image formation by intravoxel dephasing average. The proposed CIMRI model includes two inverse steps to reverse the T2*MRI procedure: fieldmap calculation from MR phase image and susceptibility source calculation from the fieldmap. The inverse step from fieldmap to susceptibility map is a 3D ill-posed deconvolution problem, which can be solved by three kinds of approaches: Tikhonov-regularized matrix inverse, inverse filtering with a truncated filter, and total variation (TV) iteration. By numerical simulation, we validate the CIMRI model by comparing the reconstructed susceptibility maps for a predefined susceptibility source. Results Numerical simulations of CIMRI show that the split Bregman TV iteration solver can reconstruct the susceptibility map from a MR phase image with high fidelity (spatial correlation≈0.99). The split Bregman TV iteration solver includes noise reduction, edge preservation, and image energy conservation. For applications to brain susceptibility reconstruction, it is important to calibrate the TV iteration program by selecting suitable values of the regularization parameter. Conclusions The proposed CIMRI model can reconstruct the magnetic susceptibility source of T2*MRI by two computational steps: calculating the fieldmap from the phase image and reconstructing the susceptibility map from the fieldmap. The crux of CIMRI lies in an ill-posed 3D deconvolution problem, which can be effectively solved by the split Bregman TV iteration algorithm. PMID:22446372

Surface registration technique for close-range mapping applications

NASA Astrophysics Data System (ADS)

Habib, Ayman F.; Cheng, Rita W. T.

2006-08-01

Close-range mapping applications such as cultural heritage restoration, virtual reality modeling for the entertainment industry, and anatomical feature recognition for medical activities require 3D data that is usually acquired by high resolution close-range laser scanners. Since these datasets are typically captured from different viewpoints and/or at different times, accurate registration is a crucial procedure for 3D modeling of mapped objects. Several registration techniques are available that work directly with the raw laser points or with extracted features from the point cloud. Some examples include the commonly known Iterative Closest Point (ICP) algorithm and a recently proposed technique based on matching spin-images. This research focuses on developing a surface matching algorithm that is based on the Modified Iterated Hough Transform (MIHT) and ICP to register 3D data. The proposed algorithm works directly with the raw 3D laser points and does not assume point-to-point correspondence between two laser scans. The algorithm can simultaneously establish correspondence between two surfaces and estimates the transformation parameters relating them. Experiment with two partially overlapping laser scans of a small object is performed with the proposed algorithm and shows successful registration. A high quality of fit between the two scans is achieved and improvement is found when compared to the results obtained using the spin-image technique. The results demonstrate the feasibility of the proposed algorithm for registering 3D laser scanning data in close-range mapping applications to help with the generation of complete 3D models.

Ambient-noise Tomography of the Southern California Lithosphere

NASA Astrophysics Data System (ADS)

Basini, P.; Liu, Q.; Tape, C.

2012-12-01

We exploit the stacked ambient noise cross-correlation functions (NCF) to improve the 3-D velocity structures of southern California crust and upper mantle. NCFs are extracted between pairs of seismic stations as approximations to 3D Greens functions based on the assumption of diffuse wavefields. Thanks to the dense instrumental coverage in south California a high number (around 13000) of NCFs are available that allow us to reach anunprecedented high imaging resolution. The 3-D crustal model m16 of Tape et al. (2009) which describes the detailed crustal variation of southern California region is incorporated into the starting model of our adjoint tomographic inversions. The use of 3D initial model help reduce the nonlinearity of the inverse problem and the number of required iterations. We iteratively improve the velocity model by combining spectral-element (SEM) simulations of seismic wave propagation with Frechet derivatives computed by adjoint methods. The multi-taper traveltime misfit function that quantifies the difference between NCFs (measured over the windows of predominantly surface waves at the period range of 10-20 seconds) and 3D Greens functions for the current model also defines the adjoint sources which produces the necessary Frechet derivatives (sensitivity kernels) through an adjoint simulation. Interesting mantle heterogeneities are revealed due to the improved depth resolution of surface waves. The quality of inversion results may be assessed through the misfit between NCFs and Greens functions for the final model in terms of traveltime, amplitude as well as full waveform. An independent set of earthquakes data and synthetics may also be introduced to verify the final mode.

Nonrigid iterative closest points for registration of 3D biomedical surfaces

NASA Astrophysics Data System (ADS)

Liang, Luming; Wei, Mingqiang; Szymczak, Andrzej; Petrella, Anthony; Xie, Haoran; Qin, Jing; Wang, Jun; Wang, Fu Lee

2018-01-01

Advanced 3D optical and laser scanners bring new challenges to computer graphics. We present a novel nonrigid surface registration algorithm based on Iterative Closest Point (ICP) method with multiple correspondences. Our method, called the Nonrigid Iterative Closest Points (NICPs), can be applied to surfaces of arbitrary topology. It does not impose any restrictions on the deformation, e.g. rigidity or articulation. Finally, it does not require parametrization of input meshes. Our method is based on an objective function that combines distance and regularization terms. Unlike the standard ICP, the distance term is determined based on multiple two-way correspondences rather than single one-way correspondences between surfaces. A Laplacian-based regularization term is proposed to take full advantage of multiple two-way correspondences. This term regularizes the surface movement by enforcing vertices to move coherently with their 1-ring neighbors. The proposed method achieves good performances when no global pose differences or significant amount of bending exists in the models, for example, families of similar shapes, like human femur and vertebrae models.

CAD-Based Shielding Analysis for ITER Port Diagnostics

NASA Astrophysics Data System (ADS)

Serikov, Arkady; Fischer, Ulrich; Anthoine, David; Bertalot, Luciano; De Bock, Maartin; O'Connor, Richard; Juarez, Rafael; Krasilnikov, Vitaly

2017-09-01

Radiation shielding analysis conducted in support of design development of the contemporary diagnostic systems integrated inside the ITER ports is relied on the use of CAD models. This paper presents the CAD-based MCNP Monte Carlo radiation transport and activation analyses for the Diagnostic Upper and Equatorial Port Plugs (UPP #3 and EPP #8, #17). The creation process of the complicated 3D MCNP models of the diagnostics systems was substantially accelerated by application of the CAD-to-MCNP converter programs MCAM and McCad. High performance computing resources of the Helios supercomputer allowed to speed-up the MCNP parallel transport calculations with the MPI/OpenMP interface. The found shielding solutions could be universal, reducing ports R&D costs. The shield block behind the Tritium and Deposit Monitor (TDM) optical box was added to study its influence on Shut-Down Dose Rate (SDDR) in Port Interspace (PI) of EPP#17. Influence of neutron streaming along the Lost Alpha Monitor (LAM) on the neutron energy spectra calculated in the Tangential Neutron Spectrometer (TNS) of EPP#8. For the UPP#3 with Charge eXchange Recombination Spectroscopy (CXRS-core), an excessive neutron streaming along the CXRS shutter, which should be prevented in further design iteration.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fu, Guoyong; Budny, Robert; Gorelenkov, Nikolai

We report here the work done for the FY14 OFES Theory Performance Target as given below: "Understanding alpha particle confinement in ITER, the world's first burning plasma experiment, is a key priority for the fusion program. In FY 2014, determine linear instability trends and thresholds of energetic particle-driven shear Alfven eigenmodes in ITER for a range of parameters and profiles using a set of complementary simulation models (gyrokinetic, hybrid, and gyrofluid). Carry out initial nonlinear simulations to assess the effects of the unstable modes on energetic particle transport". In the past year (FY14), a systematic study of the alpha-driven Alfvenmore » modes in ITER has been carried out jointly by researchers from six institutions involving seven codes including the transport simulation code TRANSP (R. Budny and F. Poli, PPPL), three gyrokinetic codes: GEM (Y. Chen, Univ. of Colorado), GTC (J. McClenaghan, Z. Lin, UCI), and GYRO (E. Bass, R. Waltz, UCSD/GA), the hybrid code M3D-K (G.Y. Fu, PPPL), the gyro-fluid code TAEFL (D. Spong, ORNL), and the linear kinetic stability code NOVA-K (N. Gorelenkov, PPPL). A range of ITER parameters and profiles are specified by TRANSP simulation of a hybrid scenario case and a steady-state scenario case. Based on the specified ITER equilibria linear stability calculations are done to determine the stability boundary of alpha-driven high-n TAEs using the five initial value codes (GEM, GTC, GYRO, M3D-K, and TAEFL) and the kinetic stability code (NOVA-K). Both the effects of alpha particles and beam ions have been considered. Finally, the effects of the unstable modes on energetic particle transport have been explored using GEM and M3D-K.« less

An object-oriented simulator for 3D digital breast tomosynthesis imaging system.

PubMed

Seyyedi, Saeed; Cengiz, Kubra; Kamasak, Mustafa; Yildirim, Isa

2013-01-01

Digital breast tomosynthesis (DBT) is an innovative imaging modality that provides 3D reconstructed images of breast to detect the breast cancer. Projections obtained with an X-ray source moving in a limited angle interval are used to reconstruct 3D image of breast. Several reconstruction algorithms are available for DBT imaging. Filtered back projection algorithm has traditionally been used to reconstruct images from projections. Iterative reconstruction algorithms such as algebraic reconstruction technique (ART) were later developed. Recently, compressed sensing based methods have been proposed in tomosynthesis imaging problem. We have developed an object-oriented simulator for 3D digital breast tomosynthesis (DBT) imaging system using C++ programming language. The simulator is capable of implementing different iterative and compressed sensing based reconstruction methods on 3D digital tomosynthesis data sets and phantom models. A user friendly graphical user interface (GUI) helps users to select and run the desired methods on the designed phantom models or real data sets. The simulator has been tested on a phantom study that simulates breast tomosynthesis imaging problem. Results obtained with various methods including algebraic reconstruction technique (ART) and total variation regularized reconstruction techniques (ART+TV) are presented. Reconstruction results of the methods are compared both visually and quantitatively by evaluating performances of the methods using mean structural similarity (MSSIM) values.

An Object-Oriented Simulator for 3D Digital Breast Tomosynthesis Imaging System

PubMed Central

Cengiz, Kubra

2013-01-01

Digital breast tomosynthesis (DBT) is an innovative imaging modality that provides 3D reconstructed images of breast to detect the breast cancer. Projections obtained with an X-ray source moving in a limited angle interval are used to reconstruct 3D image of breast. Several reconstruction algorithms are available for DBT imaging. Filtered back projection algorithm has traditionally been used to reconstruct images from projections. Iterative reconstruction algorithms such as algebraic reconstruction technique (ART) were later developed. Recently, compressed sensing based methods have been proposed in tomosynthesis imaging problem. We have developed an object-oriented simulator for 3D digital breast tomosynthesis (DBT) imaging system using C++ programming language. The simulator is capable of implementing different iterative and compressed sensing based reconstruction methods on 3D digital tomosynthesis data sets and phantom models. A user friendly graphical user interface (GUI) helps users to select and run the desired methods on the designed phantom models or real data sets. The simulator has been tested on a phantom study that simulates breast tomosynthesis imaging problem. Results obtained with various methods including algebraic reconstruction technique (ART) and total variation regularized reconstruction techniques (ART+TV) are presented. Reconstruction results of the methods are compared both visually and quantitatively by evaluating performances of the methods using mean structural similarity (MSSIM) values. PMID:24371468

Verification of a three-dimensional FEM model for FBGs in PANDA fibers by transversal load experiments

NASA Astrophysics Data System (ADS)

Fischer, Bennet; Hopf, Barbara; Lindner, Markus; Koch, Alexander W.; Roths, Johannes

2017-04-01

A 3D FEM model of an FBG in a PANDA fiber with an extended fiber length of 25.4 mm is presented. Simulating long fiber lengths with limited computer power is achieved by using an iterative solver and by optimizing the FEM mesh. For verification purposes, the model is adapted to a configuration with transversal loads on the fiber. The 3D FEM model results correspond with experimental data and with the results of an additional 2D FEM plain strain model. In further studies, this 3D model shall be applied to more sophisticated situations, for example to study the temperature dependence of surface-glued or embedded FBGs in PANDA fibers that are used for strain-temperature decoupling.

Three-dimensional forward modeling of DC resistivity using the aggregation-based algebraic multigrid method

NASA Astrophysics Data System (ADS)

Chen, Hui; Deng, Ju-Zhi; Yin, Min; Yin, Chang-Chun; Tang, Wen-Wu

2017-03-01

To speed up three-dimensional (3D) DC resistivity modeling, we present a new multigrid method, the aggregation-based algebraic multigrid method (AGMG). We first discretize the differential equation of the secondary potential field with mixed boundary conditions by using a seven-point finite-difference method to obtain a large sparse system of linear equations. Then, we introduce the theory behind the pairwise aggregation algorithms for AGMG and use the conjugate-gradient method with the V-cycle AGMG preconditioner (AGMG-CG) to solve the linear equations. We use typical geoelectrical models to test the proposed AGMG-CG method and compare the results with analytical solutions and the 3DDCXH algorithm for 3D DC modeling (3DDCXH). In addition, we apply the AGMG-CG method to different grid sizes and geoelectrical models and compare it to different iterative methods, such as ILU-BICGSTAB, ILU-GCR, and SSOR-CG. The AGMG-CG method yields nearly linearly decreasing errors, whereas the number of iterations increases slowly with increasing grid size. The AGMG-CG method is precise and converges fast, and thus can improve the computational efficiency in forward modeling of three-dimensional DC resistivity.

Inferring global upper-mantle shear attenuation structure by waveform tomography using the spectral element method

NASA Astrophysics Data System (ADS)

Karaoǧlu, Haydar; Romanowicz, Barbara

2018-06-01

We present a global upper-mantle shear wave attenuation model that is built through a hybrid full-waveform inversion algorithm applied to long-period waveforms, using the spectral element method for wavefield computations. Our inversion strategy is based on an iterative approach that involves the inversion for successive updates in the attenuation parameter (δ Q^{-1}_μ) and elastic parameters (isotropic velocity VS, and radial anisotropy parameter ξ) through a Gauss-Newton-type optimization scheme that employs envelope- and waveform-type misfit functionals for the two steps, respectively. We also include source and receiver terms in the inversion steps for attenuation structure. We conducted a total of eight iterations (six for attenuation and two for elastic structure), and one inversion for updates to source parameters. The starting model included the elastic part of the relatively high-resolution 3-D whole mantle seismic velocity model, SEMUCB-WM1, which served to account for elastic focusing effects. The data set is a subset of the three-component surface waveform data set, filtered between 400 and 60 s, that contributed to the construction of the whole-mantle tomographic model SEMUCB-WM1. We applied strict selection criteria to this data set for the attenuation iteration steps, and investigated the effect of attenuation crustal structure on the retrieved mantle attenuation structure. While a constant 1-D Qμ model with a constant value of 165 throughout the upper mantle was used as starting model for attenuation inversion, we were able to recover, in depth extent and strength, the high-attenuation zone present in the depth range 80-200 km. The final 3-D model, SEMUCB-UMQ, shows strong correlation with tectonic features down to 200-250 km depth, with low attenuation beneath the cratons, stable parts of continents and regions of old oceanic crust, and high attenuation along mid-ocean ridges and backarcs. Below 250 km, we observe strong attenuation in the southwestern Pacific and eastern Africa, while low attenuation zones fade beneath most of the cratons. The strong negative correlation of Q^{-1}_μ and VS anomalies at shallow upper-mantle depths points to a common dominant origin for the two, likely due to variations in thermal structure. A comparison with two other global upper-mantle attenuation models shows promising consistency. As we updated the elastic 3-D model in alternate iterations, we found that the VS part of the model was stable, while the ξ structure evolution was more pronounced, indicating that it may be important to include 3-D attenuation effects when inverting for ξ, possibly due to the influence of dispersion corrections on this less well-constrained parameter.

2.5D transient electromagnetic inversion with OCCAM method

NASA Astrophysics Data System (ADS)

Li, R.; Hu, X.

2016-12-01

In the application of time-domain electromagnetic method (TEM), some multidimensional inversion schemes are applied for imaging in the past few decades to overcome great error produced by 1D model inversion when the subsurface structure is complex. The current mainstream multidimensional inversion for EM data, with the finite-difference time-domain (FDTD) forward method, mainly implemented by Nonlinear Conjugate Gradient (NLCG). But the convergence rate of NLCG heavily depends on Lagrange multiplier and maybe fail to converge. We use the OCCAM inversion method to avoid the weakness. OCCAM inversion is proven to be a more stable and reliable method to image the subsurface 2.5D electrical conductivity. Firstly, we simulate the 3D transient EM fields governed by Maxwell's equations with FDTD method. Secondly, we use the OCCAM inversion scheme with the appropriate objective error functional we established to image the 2.5D structure. And the data space OCCAM's inversion (DASOCC) strategy based on OCCAM scheme were given in this paper. The sensitivity matrix is calculated with the method of time-integrated back-propagated fields. Imaging result of example model shown in Fig. 1 have proven that the OCCAM scheme is an efficient inversion method for TEM with FDTD method. The processes of the inversion iterations have shown the great ability of convergence with few iterations. Summarizing the process of the imaging, we can make the following conclusions. Firstly, the 2.5D imaging in FDTD system with OCCAM inversion demonstrates that we could get desired imaging results for the resistivity structure in the homogeneous half-space. Secondly, the imaging results usually do not over-depend on the initial model, but the iteration times can be reduced distinctly if the background resistivity of initial model get close to the truthful model. So it is batter to set the initial model based on the other geologic information in the application. When the background resistivity fit the truthful model well, the imaging of anomalous body only need a few iteration steps. Finally, the speed of imaging vertical boundaries is slower than the speed of imaging the horizontal boundaries.

3D automatic anatomy recognition based on iterative graph-cut-ASM

NASA Astrophysics Data System (ADS)

Chen, Xinjian; Udupa, Jayaram K.; Bagci, Ulas; Alavi, Abass; Torigian, Drew A.

2010-02-01

We call the computerized assistive process of recognizing, delineating, and quantifying organs and tissue regions in medical imaging, occurring automatically during clinical image interpretation, automatic anatomy recognition (AAR). The AAR system we are developing includes five main parts: model building, object recognition, object delineation, pathology detection, and organ system quantification. In this paper, we focus on the delineation part. For the modeling part, we employ the active shape model (ASM) strategy. For recognition and delineation, we integrate several hybrid strategies of combining purely image based methods with ASM. In this paper, an iterative Graph-Cut ASM (IGCASM) method is proposed for object delineation. An algorithm called GC-ASM was presented at this symposium last year for object delineation in 2D images which attempted to combine synergistically ASM and GC. Here, we extend this method to 3D medical image delineation. The IGCASM method effectively combines the rich statistical shape information embodied in ASM with the globally optimal delineation capability of the GC method. We propose a new GC cost function, which effectively integrates the specific image information with the ASM shape model information. The proposed methods are tested on a clinical abdominal CT data set. The preliminary results show that: (a) it is feasible to explicitly bring prior 3D statistical shape information into the GC framework; (b) the 3D IGCASM delineation method improves on ASM and GC and can provide practical operational time on clinical images.

The ITER ICRF Antenna Design with TOPICA

NASA Astrophysics Data System (ADS)

Milanesio, Daniele; Maggiora, Riccardo; Meneghini, Orso; Vecchi, Giuseppe

2007-11-01

TOPICA (Torino Polytechnic Ion Cyclotron Antenna) code is an innovative tool for the 3D/1D simulation of Ion Cyclotron Radio Frequency (ICRF), i.e. accounting for antennas in a realistic 3D geometry and with an accurate 1D plasma model [1]. The TOPICA code has been deeply parallelized and has been already proved to be a reliable tool for antennas design and performance prediction. A detailed analysis of the 24 straps ITER ICRF antenna geometry has been carried out, underlining the strong dependence and asymmetries of the antenna input parameters due to the ITER plasma response. We optimized the antenna array geometry dimensions to maximize loading, lower mutual couplings and mitigate sheath effects. The calculated antenna input impedance matrices are TOPICA results of a paramount importance for the tuning and matching system design. Electric field distributions have been also calculated and they are used as the main input for the power flux estimation tool. The designed optimized antenna is capable of coupling 20 MW of power to plasma in the 40 -- 55 MHz frequency range with a maximum voltage of 45 kV in the feeding coaxial cables. [1] V. Lancellotti et al., Nuclear Fusion, 46 (2006) S476-S499

A finite element solver for 3-D compressible viscous flows

NASA Technical Reports Server (NTRS)

Reddy, K. C.; Reddy, J. N.; Nayani, S.

1990-01-01

Computation of the flow field inside a space shuttle main engine (SSME) requires the application of state of the art computational fluid dynamic (CFD) technology. Several computer codes are under development to solve 3-D flow through the hot gas manifold. Some algorithms were designed to solve the unsteady compressible Navier-Stokes equations, either by implicit or explicit factorization methods, using several hundred or thousands of time steps to reach a steady state solution. A new iterative algorithm is being developed for the solution of the implicit finite element equations without assembling global matrices. It is an efficient iteration scheme based on a modified nonlinear Gauss-Seidel iteration with symmetric sweeps. The algorithm is analyzed for a model equation and is shown to be unconditionally stable. Results from a series of test problems are presented. The finite element code was tested for couette flow, which is flow under a pressure gradient between two parallel plates in relative motion. Another problem that was solved is viscous laminar flow over a flat plate. The general 3-D finite element code was used to compute the flow in an axisymmetric turnaround duct at low Mach numbers.

3D near-to-surface conductivity reconstruction by inversion of VETEM data using the distorted Born iterative method

USGS Publications Warehouse

Wang, G.L.; Chew, W.C.; Cui, T.J.; Aydiner, A.A.; Wright, D.L.; Smith, D.V.

2004-01-01

Three-dimensional (3D) subsurface imaging by using inversion of data obtained from the very early time electromagnetic system (VETEM) was discussed. The study was carried out by using the distorted Born iterative method to match the internal nonlinear property of the 3D inversion problem. The forward solver was based on the total-current formulation bi-conjugate gradient-fast Fourier transform (BCCG-FFT). It was found that the selection of regularization parameter follow a heuristic rule as used in the Levenberg-Marquardt algorithm so that the iteration is stable.

[High resolution reconstruction of PET images using the iterative OSEM algorithm].

PubMed

Doll, J; Henze, M; Bublitz, O; Werling, A; Adam, L E; Haberkorn, U; Semmler, W; Brix, G

2004-06-01

Improvement of the spatial resolution in positron emission tomography (PET) by incorporation of the image-forming characteristics of the scanner into the process of iterative image reconstruction. All measurements were performed at the whole-body PET system ECAT EXACT HR(+) in 3D mode. The acquired 3D sinograms were sorted into 2D sinograms by means of the Fourier rebinning (FORE) algorithm, which allows the usage of 2D algorithms for image reconstruction. The scanner characteristics were described by a spatially variant line-spread function (LSF), which was determined from activated copper-64 line sources. This information was used to model the physical degradation processes in PET measurements during the course of 2D image reconstruction with the iterative OSEM algorithm. To assess the performance of the high-resolution OSEM algorithm, phantom measurements performed at a cylinder phantom, the hotspot Jaszczack phantom, and the 3D Hoffmann brain phantom as well as different patient examinations were analyzed. Scanner characteristics could be described by a Gaussian-shaped LSF with a full-width at half-maximum increasing from 4.8 mm at the center to 5.5 mm at a radial distance of 10.5 cm. Incorporation of the LSF into the iteration formula resulted in a markedly improved resolution of 3.0 and 3.5 mm, respectively. The evaluation of phantom and patient studies showed that the high-resolution OSEM algorithm not only lead to a better contrast resolution in the reconstructed activity distributions but also to an improved accuracy in the quantification of activity concentrations in small structures without leading to an amplification of image noise or even the occurrence of image artifacts. The spatial and contrast resolution of PET scans can markedly be improved by the presented image restauration algorithm, which is of special interest for the examination of both patients with brain disorders and small animals.

Patch-based iterative conditional geostatistical simulation using graph cuts

NASA Astrophysics Data System (ADS)

Li, Xue; Mariethoz, Gregoire; Lu, DeTang; Linde, Niklas

2016-08-01

Training image-based geostatistical methods are increasingly popular in groundwater hydrology even if existing algorithms present limitations that often make real-world applications difficult. These limitations include a computational cost that can be prohibitive for high-resolution 3-D applications, the presence of visual artifacts in the model realizations, and a low variability between model realizations due to the limited pool of patterns available in a finite-size training image. In this paper, we address these issues by proposing an iterative patch-based algorithm which adapts a graph cuts methodology that is widely used in computer graphics. Our adapted graph cuts method optimally cuts patches of pixel values borrowed from the training image and assembles them successively, each time accounting for the information of previously stitched patches. The initial simulation result might display artifacts, which are identified as regions of high cost. These artifacts are reduced by iteratively placing new patches in high-cost regions. In contrast to most patch-based algorithms, the proposed scheme can also efficiently address point conditioning. An advantage of the method is that the cut process results in the creation of new patterns that are not present in the training image, thereby increasing pattern variability. To quantify this effect, a new measure of variability is developed, the merging index, quantifies the pattern variability in the realizations with respect to the training image. A series of sensitivity analyses demonstrates the stability of the proposed graph cuts approach, which produces satisfying simulations for a wide range of parameters values. Applications to 2-D and 3-D cases are compared to state-of-the-art multiple-point methods. The results show that the proposed approach obtains significant speedups and increases variability between realizations. Connectivity functions applied to 2-D models transport simulations in 3-D models are used to demonstrate that pattern continuity is preserved.

Estimation of line dimensions in 3D direct laser writing lithography

NASA Astrophysics Data System (ADS)

Guney, M. G.; Fedder, G. K.

2016-10-01

Two photon polymerization (TPP) based 3D direct laser writing (3D-DLW) finds application in a wide range of research areas ranging from photonic and mechanical metamaterials to micro-devices. Most common structures are either single lines or formed by a set of interconnected lines as in the case of crystals. In order to increase the fidelity of these structures and reach the ultimate resolution, the laser power and scan speed used in the writing process should be chosen carefully. However, the optimization of these writing parameters is an iterative and time consuming process in the absence of a model for the estimation of line dimensions. To this end, we report a semi-empirical analytic model through simulations and fitting, and demonstrate that it can be used for estimating the line dimensions mostly within one standard deviation of the average values over a wide range of laser power and scan speed combinations. The model delimits the trend in onset of micro-explosions in the photoresist due to over-exposure and of low degree of conversion due to under-exposure. The model guides setting of high-fidelity and robust writing parameters of a photonic crystal structure without iteration and in close agreement with the estimated line dimensions. The proposed methodology is generalizable by adapting the model coefficients to any 3D-DLW setup and corresponding photoresist as a means to estimate the line dimensions for tuning the writing parameters.

Front-end antenna system design for the ITER low-field-side reflectometer system using GENRAY ray tracing.

PubMed

Wang, G; Doyle, E J; Peebles, W A

2016-11-01

A monostatic antenna array arrangement has been designed for the microwave front-end of the ITER low-field-side reflectometer (LFSR) system. This paper presents details of the antenna coupling coefficient analyses performed using GENRAY, a 3-D ray tracing code, to evaluate the plasma height accommodation capability of such an antenna array design. Utilizing modeled data for the plasma equilibrium and profiles for the ITER baseline and half-field scenarios, a design study was performed for measurement locations varying from the plasma edge to inside the top of the pedestal. A front-end antenna configuration is recommended for the ITER LFSR system based on the results of this coupling analysis.

3-D shape estimation of DNA molecules from stereo cryo-electron micro-graphs using a projection-steerable snake.

PubMed

Jacob, Mathews; Blu, Thierry; Vaillant, Cedric; Maddocks, John H; Unser, Michael

2006-01-01

We introduce a three-dimensional (3-D) parametric active contour algorithm for the shape estimation of DNA molecules from stereo cryo-electron micrographs. We estimate the shape by matching the projections of a 3-D global shape model with the micrographs; we choose the global model as a 3-D filament with a B-spline skeleton and a specified radial profile. The active contour algorithm iteratively updates the B-spline coefficients, which requires us to evaluate the projections and match them with the micrographs at every iteration. Since the evaluation of the projections of the global model is computationally expensive, we propose a fast algorithm based on locally approximating it by elongated blob-like templates. We introduce the concept of projection-steerability and derive a projection-steerable elongated template. Since the two-dimensional projections of such a blob at any 3-D orientation can be expressed as a linear combination of a few basis functions, matching the projections of such a 3-D template involves evaluating a weighted sum of inner products between the basis functions and the micrographs. The weights are simple functions of the 3-D orientation and the inner-products are evaluated efficiently by separable filtering. We choose an internal energy term that penalizes the average curvature magnitude. Since the exact length of the DNA molecule is known a priori, we introduce a constraint energy term that forces the curve to have this specified length. The sum of these energies along with the image energy derived from the matching process is minimized using the conjugate gradients algorithm. We validate the algorithm using real, as well as simulated, data and show that it performs well.

Modeling of frequency-domain scalar wave equation with the average-derivative optimal scheme based on a multigrid-preconditioned iterative solver

NASA Astrophysics Data System (ADS)

Cao, Jian; Chen, Jing-Bo; Dai, Meng-Xue

2018-01-01

An efficient finite-difference frequency-domain modeling of seismic wave propagation relies on the discrete schemes and appropriate solving methods. The average-derivative optimal scheme for the scalar wave modeling is advantageous in terms of the storage saving for the system of linear equations and the flexibility for arbitrary directional sampling intervals. However, using a LU-decomposition-based direct solver to solve its resulting system of linear equations is very costly for both memory and computational requirements. To address this issue, we consider establishing a multigrid-preconditioned BI-CGSTAB iterative solver fit for the average-derivative optimal scheme. The choice of preconditioning matrix and its corresponding multigrid components is made with the help of Fourier spectral analysis and local mode analysis, respectively, which is important for the convergence. Furthermore, we find that for the computation with unequal directional sampling interval, the anisotropic smoothing in the multigrid precondition may affect the convergence rate of this iterative solver. Successful numerical applications of this iterative solver for the homogenous and heterogeneous models in 2D and 3D are presented where the significant reduction of computer memory and the improvement of computational efficiency are demonstrated by comparison with the direct solver. In the numerical experiments, we also show that the unequal directional sampling interval will weaken the advantage of this multigrid-preconditioned iterative solver in the computing speed or, even worse, could reduce its accuracy in some cases, which implies the need for a reasonable control of directional sampling interval in the discretization.

Application of Adjoint Method and Spectral-Element Method to Tomographic Inversion of Regional Seismological Structure Beneath Japanese Islands

NASA Astrophysics Data System (ADS)

Tsuboi, S.; Miyoshi, T.; Obayashi, M.; Tono, Y.; Ando, K.

2014-12-01

Recent progress in large scale computing by using waveform modeling technique and high performance computing facility has demonstrated possibilities to perform full-waveform inversion of three dimensional (3D) seismological structure inside the Earth. We apply the adjoint method (Liu and Tromp, 2006) to obtain 3D structure beneath Japanese Islands. First we implemented Spectral-Element Method to K-computer in Kobe, Japan. We have optimized SPECFEM3D_GLOBE (Komatitsch and Tromp, 2002) by using OpenMP so that the code fits hybrid architecture of K-computer. Now we could use 82,134 nodes of K-computer (657,072 cores) to compute synthetic waveform with about 1 sec accuracy for realistic 3D Earth model and its performance was 1.2 PFLOPS. We use this optimized SPECFEM3D_GLOBE code and take one chunk around Japanese Islands from global mesh and compute synthetic seismograms with accuracy of about 10 second. We use GAP-P2 mantle tomography model (Obayashi et al., 2009) as an initial 3D model and use as many broadband seismic stations available in this region as possible to perform inversion. We then use the time windows for body waves and surface waves to compute adjoint sources and calculate adjoint kernels for seismic structure. We have performed several iteration and obtained improved 3D structure beneath Japanese Islands. The result demonstrates that waveform misfits between observed and theoretical seismograms improves as the iteration proceeds. We now prepare to use much shorter period in our synthetic waveform computation and try to obtain seismic structure for basin scale model, such as Kanto basin, where there are dense seismic network and high seismic activity. Acknowledgements: This research was partly supported by MEXT Strategic Program for Innovative Research. We used F-net seismograms of the National Research Institute for Earth Science and Disaster Prevention.

Modeling Data Containing Outliers using ARIMA Additive Outlier (ARIMA-AO)

NASA Astrophysics Data System (ADS)

Saleh Ahmar, Ansari; Guritno, Suryo; Abdurakhman; Rahman, Abdul; Awi; Alimuddin; Minggi, Ilham; Arif Tiro, M.; Kasim Aidid, M.; Annas, Suwardi; Utami Sutiksno, Dian; Ahmar, Dewi S.; Ahmar, Kurniawan H.; Abqary Ahmar, A.; Zaki, Ahmad; Abdullah, Dahlan; Rahim, Robbi; Nurdiyanto, Heri; Hidayat, Rahmat; Napitupulu, Darmawan; Simarmata, Janner; Kurniasih, Nuning; Andretti Abdillah, Leon; Pranolo, Andri; Haviluddin; Albra, Wahyudin; Arifin, A. Nurani M.

2018-01-01

The aim this study is discussed on the detection and correction of data containing the additive outlier (AO) on the model ARIMA (p, d, q). The process of detection and correction of data using an iterative procedure popularized by Box, Jenkins, and Reinsel (1994). By using this method we obtained an ARIMA models were fit to the data containing AO, this model is added to the original model of ARIMA coefficients obtained from the iteration process using regression methods. In the simulation data is obtained that the data contained AO initial models are ARIMA (2,0,0) with MSE = 36,780, after the detection and correction of data obtained by the iteration of the model ARIMA (2,0,0) with the coefficients obtained from the regression Zt = 0,106+0,204Z t-1+0,401Z t-2-329X 1(t)+115X 2(t)+35,9X 3(t) and MSE = 19,365. This shows that there is an improvement of forecasting error rate data.

RELAP5 Model of the First Wall/Blanket Primary Heat Transfer System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Popov, Emilian L; Yoder Jr, Graydon L; Kim, Seokho H

2010-06-01

ITER inductive power operation is modeled and simulated using a system level computer code to evaluate the behavior of the Primary Heat Transfer System (PHTS) and predict parameter operational ranges. The control algorithm strategy and derivation are summarized in this report as well. A major feature of ITER is pulsed operation. The plasma does not burn continuously, but the power is pulsed with large periods of zero power between pulses. This feature requires active temperature control to maintain a constant blanket inlet temperature and requires accommodation of coolant thermal expansion during the pulse. In view of the transient nature ofmore » the power (plasma) operation state a transient system thermal-hydraulics code was selected: RELAP5. The code has a well-documented history for nuclear reactor transient analyses, it has been benchmarked against numerous experiments, and a large user database of commonly accepted modeling practices exists. The process of heat deposition and transfer in the blanket modules is multi-dimensional and cannot be accurately captured by a one-dimensional code such as RELAP5. To resolve this, a separate CFD calculation of blanket thermal power evolution was performed using the 3-D SC/Tetra thermofluid code. A 1D-3D co-simulation more realistically models FW/blanket internal time-dependent thermal inertia while eliminating uncertainties in the time constant assumed in a 1-D system code. Blanket water outlet temperature and heat release histories for any given ITER pulse operation scenario are calculated. These results provide the basis for developing time dependent power forcing functions which are used as input in the RELAP5 calculations.« less

Short-Period, Anelastic and Anisotropic, Waveform-Based 3D Middle East Model to Improve Nuclear Explosion Monitoring

DTIC Science & Technology

2014-08-30

initial wave speed model, M00, was used while model iteration 13, M13 , was used within. This expansion of the model does not significantly alter the...total misfit between M13 and M14. The increase in events, stations, and ray-based path coverage is displayed in Figure 4. Expanding the model domain

Registering myocardial fiber orientations with heart geometry using iterative closest points algorithms

NASA Astrophysics Data System (ADS)

Deng, Dongdong; Jiao, Peifeng; Shou, Guofa; Xia, Ling

2009-10-01

Myocardial electrical excitation propagation is anisotropic, with the most rapid spread of current along the direction of the long axis of the fiber. Fiber orientation is also an important determinant of myocardial mechanics. So myocardial fiber orientations are very important to heart modeling and simulation. Accurately construction of myocardial fiber orientations, however, is still a challenge. The purpose of this paper is to construct a heart geometrical model with myocardial fiber orientations based on CT and 3D laser scanned pictures. The iterative closest points (ICP) algorithms were used to register the fiber orientations with the heart geometry.

An iterative solver for the 3D Helmholtz equation

NASA Astrophysics Data System (ADS)

Belonosov, Mikhail; Dmitriev, Maxim; Kostin, Victor; Neklyudov, Dmitry; Tcheverda, Vladimir

2017-09-01

We develop a frequency-domain iterative solver for numerical simulation of acoustic waves in 3D heterogeneous media. It is based on the application of a unique preconditioner to the Helmholtz equation that ensures convergence for Krylov subspace iteration methods. Effective inversion of the preconditioner involves the Fast Fourier Transform (FFT) and numerical solution of a series of boundary value problems for ordinary differential equations. Matrix-by-vector multiplication for iterative inversion of the preconditioned matrix involves inversion of the preconditioner and pointwise multiplication of grid functions. Our solver has been verified by benchmarking against exact solutions and a time-domain solver.

Validation of the model for ELM suppression with 3D magnetic fields using low torque ITER baseline scenario discharges in DIII-D

NASA Astrophysics Data System (ADS)

Moyer, R. A.; Paz-Soldan, C.; Nazikian, R.; Orlov, D. M.; Ferraro, N. M.; Grierson, B. A.; Knölker, M.; Lyons, B. C.; McKee, G. R.; Osborne, T. H.; Rhodes, T. L.; Meneghini, O.; Smith, S.; Evans, T. E.; Fenstermacher, M. E.; Groebner, R. J.; Hanson, J. M.; La Haye, R. J.; Luce, T. C.; Mordijck, S.; Solomon, W. M.; Turco, F.; Yan, Z.; Zeng, L.; DIII-D Team

2017-10-01

Experiments have been executed in the DIII-D tokamak to extend suppression of Edge Localized Modes (ELMs) with Resonant Magnetic Perturbations (RMPs) to ITER-relevant levels of beam torque. The results support the hypothesis for RMP ELM suppression based on transition from an ideal screened response to a tearing response at a resonant surface that prevents expansion of the pedestal to an unstable width [Snyder et al., Nucl. Fusion 51, 103016 (2011) and Wade et al., Nucl. Fusion 55, 023002 (2015)]. In ITER baseline plasmas with I/aB = 1.4 and pedestal ν * ˜ 0.15, ELMs are readily suppressed with co- I p neutral beam injection. However, reducing the beam torque from 5 Nm to ≤ 3.5 Nm results in loss of ELM suppression and a shift in the zero-crossing of the electron perpendicular rotation ω ⊥ e ˜ 0 deeper into the plasma. The change in radius of ω ⊥ e ˜ 0 is due primarily to changes to the electron diamagnetic rotation frequency ωe * . Linear plasma response modeling with the resistive MHD code m3d-c1 indicates that the tearing response location tracks the inward shift in ω ⊥ e ˜ 0. At pedestal ν * ˜ 1, ELM suppression is also lost when the beam torque is reduced, but the ω ⊥ e change is dominated by collapse of the toroidal rotation v T . The hypothesis predicts that it should be possible to obtain ELM suppression at reduced beam torque by also reducing the height and width of the ωe * profile. This prediction has been confirmed experimentally with RMP ELM suppression at 0 Nm of beam torque and plasma normalized pressure β N ˜ 0.7. This opens the possibility of accessing ELM suppression in low torque ITER baseline plasmas by establishing suppression at low beta and then increasing beta while relying on the strong RMP-island coupling to maintain suppression.

Three-dimensional forward modeling and inversion of marine CSEM data in anisotropic conductivity structures

NASA Astrophysics Data System (ADS)

Han, B.; Li, Y.

2016-12-01

We present a three-dimensional (3D) forward and inverse modeling code for marine controlled-source electromagnetic (CSEM) surveys in anisotropic media. The forward solution is based on a primary/secondary field approach, in which secondary fields are solved using a staggered finite-volume (FV) method and primary fields are solved for 1D isotropic background models analytically. It is shown that it is rather straightforward to extend the isotopic 3D FV algorithm to a triaxial anisotropic one, while additional coefficients are required to account for full tensor conductivity. To solve the linear system resulting from FV discretization of Maxwell' s equations, both iterative Krylov solvers (e.g. BiCGSTAB) and direct solvers (e.g. MUMPS) have been implemented, makes the code flexible for different computing platforms and different problems. For iterative soloutions, the linear system in terms of electromagnetic potentials (A-Phi) is used to precondition the original linear system, transforming the discretized Curl-Curl equations to discretized Laplace-like equations, thus much more favorable numerical properties can be obtained. Numerical experiments suggest that this A-Phi preconditioner can dramatically improve the convergence rate of an iterative solver and high accuracy can be achieved without divergence correction even for low frequencies. To efficiently calculate the sensitivities, i.e. the derivatives of CSEM data with respect to tensor conductivity, the adjoint method is employed. For inverse modeling, triaxial anisotropy is taken into account. Since the number of model parameters to be resolved of triaxial anisotropic medias is twice or thrice that of isotropic medias, the data-space version of the Gauss-Newton (GN) minimization method is preferred due to its lower computational cost compared with the traditional model-space GN method. We demonstrate the effectiveness of the code with synthetic examples.

Comparison of Compressed Sensing Algorithms for Inversion of 3-D Electrical Resistivity Tomography.

NASA Astrophysics Data System (ADS)

Peddinti, S. R.; Ranjan, S.; Kbvn, D. P.

2016-12-01

Image reconstruction algorithms derived from electrical resistivity tomography (ERT) are highly non-linear, sparse, and ill-posed. The inverse problem is much severe, when dealing with 3-D datasets that result in large sized matrices. Conventional gradient based techniques using L2 norm minimization with some sort of regularization can impose smoothness constraint on the solution. Compressed sensing (CS) is relatively new technique that takes the advantage of inherent sparsity in parameter space in one or the other form. If favorable conditions are met, CS was proven to be an efficient image reconstruction technique that uses limited observations without losing edge sharpness. This paper deals with the development of an open source 3-D resistivity inversion tool using CS framework. The forward model was adopted from RESINVM3D (Pidlisecky et al., 2007) with CS as the inverse code. Discrete cosine transformation (DCT) function was used to induce model sparsity in orthogonal form. Two CS based algorithms viz., interior point method and two-step IST were evaluated on a synthetic layered model with surface electrode observations. The algorithms were tested (in terms of quality and convergence) under varying degrees of parameter heterogeneity, model refinement, and reduced observation data space. In comparison to conventional gradient algorithms, CS was proven to effectively reconstruct the sub-surface image with less computational cost. This was observed by a general increase in NRMSE from 0.5 in 10 iterations using gradient algorithm to 0.8 in 5 iterations using CS algorithms.

Finite-fault source inversion using adjoint methods in 3D heterogeneous media

NASA Astrophysics Data System (ADS)

Somala, Surendra Nadh; Ampuero, Jean-Paul; Lapusta, Nadia

2018-04-01

Accounting for lateral heterogeneities in the 3D velocity structure of the crust is known to improve earthquake source inversion, compared to results based on 1D velocity models which are routinely assumed to derive finite-fault slip models. The conventional approach to include known 3D heterogeneity in source inversion involves pre-computing 3D Green's functions, which requires a number of 3D wave propagation simulations proportional to the number of stations or to the number of fault cells. The computational cost of such an approach is prohibitive for the dense datasets that could be provided by future earthquake observation systems. Here, we propose an adjoint-based optimization technique to invert for the spatio-temporal evolution of slip velocity. The approach does not require pre-computed Green's functions. The adjoint method provides the gradient of the cost function, which is used to improve the model iteratively employing an iterative gradient-based minimization method. The adjoint approach is shown to be computationally more efficient than the conventional approach based on pre-computed Green's functions in a broad range of situations. We consider data up to 1 Hz from a Haskell source scenario (a steady pulse-like rupture) on a vertical strike-slip fault embedded in an elastic 3D heterogeneous velocity model. The velocity model comprises a uniform background and a 3D stochastic perturbation with the von Karman correlation function. Source inversions based on the 3D velocity model are performed for two different station configurations, a dense and a sparse network with 1 km and 20 km station spacing, respectively. These reference inversions show that our inversion scheme adequately retrieves the rise time when the velocity model is exactly known, and illustrates how dense coverage improves the inference of peak slip velocities. We investigate the effects of uncertainties in the velocity model by performing source inversions based on an incorrect, homogeneous velocity model. We find that, for velocity uncertainties that have standard deviation and correlation length typical of available 3D crustal models, the inverted sources can be severely contaminated by spurious features even if the station density is high. When data from thousand or more receivers is used in source inversions in 3D heterogeneous media, the computational cost of the method proposed in this work is at least two orders of magnitude lower than source inversion based on pre-computed Green's functions.

Finite-fault source inversion using adjoint methods in 3-D heterogeneous media

NASA Astrophysics Data System (ADS)

Somala, Surendra Nadh; Ampuero, Jean-Paul; Lapusta, Nadia

2018-07-01

Accounting for lateral heterogeneities in the 3-D velocity structure of the crust is known to improve earthquake source inversion, compared to results based on 1-D velocity models which are routinely assumed to derive finite-fault slip models. The conventional approach to include known 3-D heterogeneity in source inversion involves pre-computing 3-D Green's functions, which requires a number of 3-D wave propagation simulations proportional to the number of stations or to the number of fault cells. The computational cost of such an approach is prohibitive for the dense data sets that could be provided by future earthquake observation systems. Here, we propose an adjoint-based optimization technique to invert for the spatio-temporal evolution of slip velocity. The approach does not require pre-computed Green's functions. The adjoint method provides the gradient of the cost function, which is used to improve the model iteratively employing an iterative gradient-based minimization method. The adjoint approach is shown to be computationally more efficient than the conventional approach based on pre-computed Green's functions in a broad range of situations. We consider data up to 1 Hz from a Haskell source scenario (a steady pulse-like rupture) on a vertical strike-slip fault embedded in an elastic 3-D heterogeneous velocity model. The velocity model comprises a uniform background and a 3-D stochastic perturbation with the von Karman correlation function. Source inversions based on the 3-D velocity model are performed for two different station configurations, a dense and a sparse network with 1 and 20 km station spacing, respectively. These reference inversions show that our inversion scheme adequately retrieves the rise time when the velocity model is exactly known, and illustrates how dense coverage improves the inference of peak-slip velocities. We investigate the effects of uncertainties in the velocity model by performing source inversions based on an incorrect, homogeneous velocity model. We find that, for velocity uncertainties that have standard deviation and correlation length typical of available 3-D crustal models, the inverted sources can be severely contaminated by spurious features even if the station density is high. When data from thousand or more receivers is used in source inversions in 3-D heterogeneous media, the computational cost of the method proposed in this work is at least two orders of magnitude lower than source inversion based on pre-computed Green's functions.

Three-dimensional FEM model of FBGs in PANDA fibers with experimentally determined model parameters

NASA Astrophysics Data System (ADS)

Lindner, Markus; Hopf, Barbara; Koch, Alexander W.; Roths, Johannes

2017-04-01

A 3D-FEM model has been developed to improve the understanding of multi-parameter sensing with Bragg gratings in attached or embedded polarization maintaining fibers. The material properties of the fiber, especially Young's modulus and Poisson's ratio of the fiber's stress applying parts, are crucial for accurate simulations, but are usually not provided by the manufacturers. A methodology is presented to determine the unknown parameters by using experimental characterizations of the fiber and iterative FEM simulations. The resulting 3D-Model is capable of describing the change in birefringence of the free fiber when exposed to longitudinal strain. In future studies the 3D-FEM model will be employed to study the interaction of PANDA fibers with the surrounding materials in which they are embedded.

Development of FWIGPR, an open-source package for full-waveform inversion of common-offset GPR data

NASA Astrophysics Data System (ADS)

Jazayeri, S.; Kruse, S.

2017-12-01

We introduce a package for full-waveform inversion (FWI) of Ground Penetrating Radar (GPR) data based on a combination of open-source programs. The FWI requires a good starting model, based on direct knowledge of field conditions or on traditional ray-based inversion methods. With a good starting model, the FWI can improve resolution of selected subsurface features. The package will be made available for general use in educational and research activities. The FWIGPR package consists of four main components: 3D to 2D data conversion, source wavelet estimation, forward modeling, and inversion. (These four components additionally require the development, by the user, of a good starting model.) A major challenge with GPR data is the unknown form of the waveform emitted by the transmitter held close to the ground surface. We apply a blind deconvolution method to estimate the source wavelet, based on a sparsity assumption about the reflectivity series of the subsurface model (Gholami and Sacchi 2012). The estimated wavelet is deconvolved from the data and the sparsest reflectivity series with fewest reflectors. The gprMax code (www.gprmax.com) is used as the forward modeling tool and the PEST parameter estimation package (www.pesthomepage.com) for the inversion. To reduce computation time, the field data are converted to an effective 2D equivalent, and the gprMax code can be run in 2D mode. In the first step, the user must create a good starting model of the data, presumably using ray-based methods. This estimated model will be introduced to the FWI process as an initial model. Next, the 3D data is converted to 2D, then the user estimates the source wavelet that best fits the observed data by sparsity assumption of the earth's response. Last, PEST runs gprMax with the initial model and calculates the misfit between the synthetic and observed data, and using an iterative algorithm calling gprMax several times ineach iteration, finds successive models that better fit the data. To gauge whether the iterative process has arrived at a local or global minima, the process can be repeated with a range of starting models. Tests have shown that this package can successfully improve estimates of selected subsurface model parameters for simple synthetic and real data. Ongoing research will focus on FWI of more complex scenarios.

Progress and achievements of R&D activities for the ITER vacuum vessel

NASA Astrophysics Data System (ADS)

Nakahira, M.; Takahashi, H.; Koizumi, K.; Onozuka, M.; Ioki, K.

2001-04-01

The Full Scale Sector Model Project, which was initiated in 1995 as one of the Seven Large Projects for ITER R&D, has been continued with the joint effort of the ITER Joint Central Team and the Japanese, Russian Federation and United States Home Teams. The fabrication of a full scale 18° toroidal sector, which is composed of two 9° sectors spliced at the port centre, was successfully completed in September 1997 with a dimensional accuracy of +/-3 mm for the total height and total width. Both sectors were shipped to the test site at the Japan Atomic Energy Research Institute and the integration test of the sectors was begun in October 1997. The integration test involves the adjustment of field joints, automatic narrow gap tungsten inert gas welding of field joints with splice plates and inspection of the joints by ultrasonic testing, as required for the initial assembly of the ITER vacuum vessel. This first demonstration of field joint welding and the performance test of the mechanical characteristics were completed in May 1998, and all the results obtained have satisfied the ITER design. In addition to these tests, integration with the midplane port extension fabricated by the Russian Home Team by using a fully remotized welding and cutting system developed by the US Home Team was completed in March 2000. The article describes the progress, achievements and latest status of the R&D activities for the ITER vacuum vessel.

Active control for stabilization of neoclassical tearing modesa)

NASA Astrophysics Data System (ADS)

Humphreys, D. A.; Ferron, J. R.; La Haye, R. J.; Luce, T. C.; Petty, C. C.; Prater, R.; Welander, A. S.

2006-05-01

This work describes active control algorithms used by DIII-D [J. L. Luxon, Nucl. Fusion 42, 614 (2002)] to stabilize and maintain suppression of 3/2 or 2/1 neoclassical tearing modes (NTMs) by application of electron cyclotron current drive (ECCD) at the rational q surface. The DIII-D NTM control system can determine the correct q-surface/ECCD alignment and stabilize existing modes within 100-500ms of activation, or prevent mode growth with preemptive application of ECCD, in both cases enabling stable operation at normalized beta values above 3.5. Because NTMs can limit performance or cause plasma-terminating disruptions in tokamaks, their stabilization is essential to the high performance operation of ITER [R. Aymar et al., ITER Joint Central Team, ITER Home Teams, Nucl. Fusion 41, 1301 (2001)]. The DIII-D NTM control system has demonstrated many elements of an eventual ITER solution, including general algorithms for robust detection of q-surface/ECCD alignment and for real-time maintenance of alignment following the disappearance of the mode. This latter capability, unique to DIII-D, is based on real-time reconstruction of q-surface geometry by a Grad-Shafranov solver using external magnetics and internal motional Stark effect measurements. Alignment is achieved by varying either the plasma major radius (and the rational q surface) or the toroidal field (and the deposition location). The requirement to achieve and maintain q-surface/ECCD alignment with accuracy on the order of 1cm is routinely met by the DIII-D Plasma Control System and these algorithms. We discuss the integrated plasma control design process used for developing these and other general control algorithms, which includes physics-based modeling and testing of the algorithm implementation against simulations of actuator and plasma responses. This systematic design/test method and modeling environment enabled successful mode suppression by the NTM control system upon first-time use in an experimental discharge.

Effects of Iterative Reconstruction Algorithms on Computer-assisted Detection (CAD) Software for Lung Nodules in Ultra-low-dose CT for Lung Cancer Screening.

PubMed

Nomura, Yukihiro; Higaki, Toru; Fujita, Masayo; Miki, Soichiro; Awaya, Yoshikazu; Nakanishi, Toshio; Yoshikawa, Takeharu; Hayashi, Naoto; Awai, Kazuo

2017-02-01

This study aimed to evaluate the effects of iterative reconstruction (IR) algorithms on computer-assisted detection (CAD) software for lung nodules in ultra-low-dose computed tomography (ULD-CT) for lung cancer screening. We selected 85 subjects who underwent both a low-dose CT (LD-CT) scan and an additional ULD-CT scan in our lung cancer screening program for high-risk populations. The LD-CT scans were reconstructed with filtered back projection (FBP; LD-FBP). The ULD-CT scans were reconstructed with FBP (ULD-FBP), adaptive iterative dose reduction 3D (AIDR 3D; ULD-AIDR 3D), and forward projected model-based IR solution (FIRST; ULD-FIRST). CAD software for lung nodules was applied to each image dataset, and the performance of the CAD software was compared among the different IR algorithms. The mean volume CT dose indexes were 3.02 mGy (LD-CT) and 0.30 mGy (ULD-CT). For overall nodules, the sensitivities of CAD software at 3.0 false positives per case were 78.7% (LD-FBP), 9.3% (ULD-FBP), 69.4% (ULD-AIDR 3D), and 77.8% (ULD-FIRST). Statistical analysis showed that the sensitivities of ULD-AIDR 3D and ULD-FIRST were significantly higher than that of ULD-FBP (P < .001). The performance of CAD software in ULD-CT was improved by using IR algorithms. In particular, the performance of CAD in ULD-FIRST was almost equivalent to that in LD-FBP. Copyright © 2017 The Association of University Radiologists. Published by Elsevier Inc. All rights reserved.

Semiautomatic approaches to account for 3-D distortion of the electric field from local, near-surface structures in 3-D resistivity inversions of 3-D regional magnetotelluric data

USGS Publications Warehouse

Rodriguez, Brian D.

2017-03-31

This report summarizes the results of three-dimensional (3-D) resistivity inversion simulations that were performed to account for local 3-D distortion of the electric field in the presence of 3-D regional structure, without any a priori information on the actual 3-D distribution of the known subsurface geology. The methodology used a 3-D geologic model to create a 3-D resistivity forward (“known”) model that depicted the subsurface resistivity structure expected for the input geologic configuration. The calculated magnetotelluric response of the modeled resistivity structure was assumed to represent observed magnetotelluric data and was subsequently used as input into a 3-D resistivity inverse model that used an iterative 3-D algorithm to estimate 3-D distortions without any a priori geologic information. A publicly available inversion code, WSINV3DMT, was used for all of the simulated inversions, initially using the default parameters, and subsequently using adjusted inversion parameters. A semiautomatic approach of accounting for the static shift using various selections of the highest frequencies and initial models was also tested. The resulting 3-D resistivity inversion simulation was compared to the “known” model and the results evaluated. The inversion approach that produced the lowest misfit to the various local 3-D distortions was an inversion that employed an initial model volume resistivity that was nearest to the maximum resistivities in the near-surface layer.

Seismic wave-speed structure beneath the metropolitan area of Japan based on adjoint tomography

NASA Astrophysics Data System (ADS)

Miyoshi, T.; Obayashi, M.; Tono, Y.; Tsuboi, S.

2015-12-01

We have obtained a three-dimensional (3D) model of seismic wave-speed structure beneath the metropolitan area of Japan. We applied the spectral-element method (e.g. Komatitsch and Tromp 1999) and adjoint method (Liu and Tromp 2006) to the broadband seismograms in order to infer the 3D model. We used the travel-time tomography result (Matsubara and Obara 2011) as an initial 3D model and used broadband waveforms recorded at the NIED F-net stations. We selected 147 earthquakes with magnitude of larger than 4.5 from the F-net earthquake catalog and used their bandpass filtered seismograms between 5 and 20 second with a high S/N ratio. The 3D model used for the forward and adjoint simulations is represented as a region of approximately 500 by 450 km in horizontal and 120 km in depth. Minimum period of theoretical waveforms was 4.35 second. For the adjoint inversion, we picked up the windows of the body waves from the observed and theoretical seismograms. We used SPECFEM3D_Cartesian code (e.g. Peter et al. 2011) for the forward and adjoint simulations, and their simulations were implemented by K-computer in RIKEN. Each iteration required about 0.1 million CPU hours at least. The model parameters of Vp and Vs were updated by using the steepest descent method. We obtained the fourth iterative model (M04), which reproduced observed waveforms better than the initial model. The shear wave-speed of M04 was significantly smaller than the initial model at any depth. The model of compressional wave-speed was not improved by inversion because of small alpha kernel values. Acknowledgements: This research was partly supported by MEXT Strategic Program for Innovative Research. We thank to the NIED for providing seismological data.

Transport modeling of the DIII-D high $${{\\beta}_{p}}$$ scenario and extrapolations to ITER steady-state operation

DOE PAGES

McClenaghan, Joseph; Garofalo, Andrea M.; Meneghini, Orso; ...

2017-08-03

In this study, transport modeling of a proposed ITER steady-state scenario based on DIII-D high poloidal-beta (more » $${{\\beta}_{p}}$$ ) discharges finds that ITB formation can occur with either sufficient rotation or a negative central shear q-profile. The high $${{\\beta}_{p}}$$ scenario is characterized by a large bootstrap current fraction (80%) which reduces the demands on the external current drive, and a large radius internal transport barrier which is associated with excellent normalized confinement. Modeling predictions of the electron transport in the high $${{\\beta}_{p}}$$ scenario improve as $${{q}_{95}}$$ approaches levels similar to typical existing models of ITER steady-state and the ion transport is turbulence dominated. Typical temperature and density profiles from the non-inductive high $${{\\beta}_{p}}$$ scenario on DIII-D are scaled according to 0D modeling predictions of the requirements for achieving a $Q=5$ steady-state fusion gain in ITER with 'day one' heating and current drive capabilities. Then, TGLF turbulence modeling is carried out under systematic variations of the toroidal rotation and the core q-profile. A high bootstrap fraction, high $${{\\beta}_{p}}$$ scenario is found to be near an ITB formation threshold, and either strong negative central magnetic shear or rotation in a high bootstrap fraction are found to successfully provide the turbulence suppression required to achieve $Q=5$.« less

A three-dimensional wide-angle BPM for optical waveguide structures.

PubMed

Ma, Changbao; Van Keuren, Edward

2007-01-22

Algorithms for effective modeling of optical propagation in three- dimensional waveguide structures are critical for the design of photonic devices. We present a three-dimensional (3-D) wide-angle beam propagation method (WA-BPM) using Hoekstra's scheme. A sparse matrix algebraic equation is formed and solved using iterative methods. The applicability, accuracy and effectiveness of our method are demonstrated by applying it to simulations of wide-angle beam propagation, along with a technique for shifting the simulation window to reduce the dimension of the numerical equation and a threshold technique to further ensure its convergence. These techniques can ensure the implementation of iterative methods for waveguide structures by relaxing the convergence problem, which will further enable us to develop higher-order 3-D WA-BPMs based on Padé approximant operators.

A three-dimensional wide-angle BPM for optical waveguide structures

NASA Astrophysics Data System (ADS)

Ma, Changbao; van Keuren, Edward

2007-01-01

Algorithms for effective modeling of optical propagation in three- dimensional waveguide structures are critical for the design of photonic devices. We present a three-dimensional (3-D) wide-angle beam propagation method (WA-BPM) using Hoekstra’s scheme. A sparse matrix algebraic equation is formed and solved using iterative methods. The applicability, accuracy and effectiveness of our method are demonstrated by applying it to simulations of wide-angle beam propagation, along with a technique for shifting the simulation window to reduce the dimension of the numerical equation and a threshold technique to further ensure its convergence. These techniques can ensure the implementation of iterative methods for waveguide structures by relaxing the convergence problem, which will further enable us to develop higher-order 3-D WA-BPMs based on Padé approximant operators.

Second Iteration of Photogrammetric Pipeline to Enhance the Accuracy of Image Pose Estimation

NASA Astrophysics Data System (ADS)

Nguyen, T. G.; Pierrot-Deseilligny, M.; Muller, J.-M.; Thom, C.

2017-05-01

In classical photogrammetric processing pipeline, the automatic tie point extraction plays a key role in the quality of achieved results. The image tie points are crucial to pose estimation and have a significant influence on the precision of calculated orientation parameters. Therefore, both relative and absolute orientations of the 3D model can be affected. By improving the precision of image tie point measurement, one can enhance the quality of image orientation. The quality of image tie points is under the influence of several factors such as the multiplicity, the measurement precision and the distribution in 2D images as well as in 3D scenes. In complex acquisition scenarios such as indoor applications and oblique aerial images, tie point extraction is limited while only image information can be exploited. Hence, we propose here a method which improves the precision of pose estimation in complex scenarios by adding a second iteration to the classical processing pipeline. The result of a first iteration is used as a priori information to guide the extraction of new tie points with better quality. Evaluated with multiple case studies, the proposed method shows its validity and its high potiential for precision improvement.

Adjoint Tomography of the Southern California Crust (Invited) (Invited)

NASA Astrophysics Data System (ADS)

Tape, C.; Liu, Q.; Maggi, A.; Tromp, J.

2009-12-01

We iteratively improve a three-dimensional tomographic model of the southern California crust using numerical simulations of seismic wave propagation based on a spectral-element method (SEM) in combination with an adjoint method. The initial 3D model is provided by the Southern California Earthquake Center. The dataset comprises three-component seismic waveforms (i.e. both body and surface waves), filtered over the period range 2-30 s, from 143 local earthquakes recorded by a network of 203 stations. Time windows for measurements are automatically selected by the FLEXWIN algorithm. The misfit function in the tomographic inversion is based on frequency-dependent multitaper traveltime differences. The gradient of the misfit function and related finite-frequency sensitivity kernels for each earthquake are computed using an adjoint technique. The kernels are combined using a source subspace projection method to compute a model update at each iteration of a gradient-based minimization algorithm. The inversion involved 16 iterations, which required 6800 wavefield simulations and a total of 0.8 million CPU hours. The new crustal model, m16, is described in terms of independent shear (Vs) and bulk-sound (Vb) wavespeed variations. It exhibits strong heterogeneity, including local changes of ±30% with respect to the initial 3D model. The model reveals several features that relate to geologic observations, such as sedimentary basins, exhumed batholiths, and contrasting lithologies across faults. The quality of the new model is validated by quantifying waveform misfits of full-length seismograms from 91 earthquakes that were not used in the tomographic inversion. The new model provides more accurate synthetic seismograms that will benefit seismic hazard assessment.

A fresh look at electron cyclotron current drive power requirements for stabilization of tearing modes in ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

La Haye, R. J., E-mail: lahaye@fusion.gat.com

2015-12-10

ITER is an international project to design and build an experimental fusion reactor based on the “tokamak” concept. ITER relies upon localized electron cyclotron current drive (ECCD) at the rational safety factor q=2 to suppress or stabilize the expected poloidal mode m=2, toroidal mode n=1 neoclassical tearing mode (NTM) islands. Such islands if unmitigated degrade energy confinement, lock to the resistive wall (stop rotating), cause loss of “H-mode” and induce disruption. The International Tokamak Physics Activity (ITPA) on MHD, Disruptions and Magnetic Control joint experiment group MDC-8 on Current Drive Prevention/Stabilization of Neoclassical Tearing Modes started in 2005, after whichmore » assessments were made for the requirements for ECCD needed in ITER, particularly that of rf power and alignment on q=2 [1]. Narrow well-aligned rf current parallel to and of order of one percent of the total plasma current is needed to replace the “missing” current in the island O-points and heal or preempt (avoid destabilization by applying ECCD on q=2 in absence of the mode) the island [2-4]. This paper updates the advances in ECCD stabilization on NTMs learned in DIII-D experiments and modeling during the last 5 to 10 years as applies to stabilization by localized ECCD of tearing modes in ITER. This includes the ECCD (inside the q=1 radius) stabilization of the NTM “seeding” instability known as sawteeth (m/n=1/1) [5]. Recent measurements in DIII-D show that the ITER-similar current profile is classically unstable, curvature stabilization must not be neglected, and the small island width stabilization effect from helical ion polarization currents is stronger than was previously thought [6]. The consequences of updated assumptions in ITER modeling of the minimum well-aligned ECCD power needed are all-in-all favorable (and well-within the ITER 24 gyrotron capability) when all effects are included. However, a “wild card” may be broadening of the localized ECCD by the presence of the island; various theories predict broadening could occur and there is experimental evidence for broadening in DIII-D. Wider than now expected ECCD in ITER would make alignment easier to do but weaken the stabilization and thus require more rf power. In addition to updated modeling for ITER, advances in the ITER-relevant DIII-D ECCD gyrotron launch mirror control system hardware and real-time plasma control system have been made [7] and there are plans for application in DIII-D ITER demonstration discharges.« less

A fresh look at electron cyclotron current drive power requirements for stabilization of tearing modes in ITER

NASA Astrophysics Data System (ADS)

La Haye, R. J.

2015-12-01

ITER is an international project to design and build an experimental fusion reactor based on the "tokamak" concept. ITER relies upon localized electron cyclotron current drive (ECCD) at the rational safety factor q=2 to suppress or stabilize the expected poloidal mode m=2, toroidal mode n=1 neoclassical tearing mode (NTM) islands. Such islands if unmitigated degrade energy confinement, lock to the resistive wall (stop rotating), cause loss of "H-mode" and induce disruption. The International Tokamak Physics Activity (ITPA) on MHD, Disruptions and Magnetic Control joint experiment group MDC-8 on Current Drive Prevention/Stabilization of Neoclassical Tearing Modes started in 2005, after which assessments were made for the requirements for ECCD needed in ITER, particularly that of rf power and alignment on q=2 [1]. Narrow well-aligned rf current parallel to and of order of one percent of the total plasma current is needed to replace the "missing" current in the island O-points and heal or preempt (avoid destabilization by applying ECCD on q=2 in absence of the mode) the island [2-4]. This paper updates the advances in ECCD stabilization on NTMs learned in DIII-D experiments and modeling during the last 5 to 10 years as applies to stabilization by localized ECCD of tearing modes in ITER. This includes the ECCD (inside the q=1 radius) stabilization of the NTM "seeding" instability known as sawteeth (m/n=1/1) [5]. Recent measurements in DIII-D show that the ITER-similar current profile is classically unstable, curvature stabilization must not be neglected, and the small island width stabilization effect from helical ion polarization currents is stronger than was previously thought [6]. The consequences of updated assumptions in ITER modeling of the minimum well-aligned ECCD power needed are all-in-all favorable (and well-within the ITER 24 gyrotron capability) when all effects are included. However, a "wild card" may be broadening of the localized ECCD by the presence of the island; various theories predict broadening could occur and there is experimental evidence for broadening in DIII-D. Wider than now expected ECCD in ITER would make alignment easier to do but weaken the stabilization and thus require more rf power. In addition to updated modeling for ITER, advances in the ITER-relevant DIII-D ECCD gyrotron launch mirror control system hardware and real-time plasma control system have been made [7] and there are plans for application in DIII-D ITER demonstration discharges.

Progress on the application of ELM control schemes to ITER scenarios from the non-active phase to DT operation

NASA Astrophysics Data System (ADS)

Loarte, A.; Huijsmans, G.; Futatani, S.; Baylor, L. R.; Evans, T. E.; Orlov, D. M.; Schmitz, O.; Becoulet, M.; Cahyna, P.; Gribov, Y.; Kavin, A.; Sashala Naik, A.; Campbell, D. J.; Casper, T.; Daly, E.; Frerichs, H.; Kischner, A.; Laengner, R.; Lisgo, S.; Pitts, R. A.; Saibene, G.; Wingen, A.

2014-03-01

Progress in the definition of the requirements for edge localized mode (ELM) control and the application of ELM control methods both for high fusion performance DT operation and non-active low-current operation in ITER is described. Evaluation of the power fluxes for low plasma current H-modes in ITER shows that uncontrolled ELMs will not lead to damage to the tungsten (W) divertor target, unlike for high-current H-modes in which divertor damage by uncontrolled ELMs is expected. Despite the lack of divertor damage at lower currents, ELM control is found to be required in ITER under these conditions to prevent an excessive contamination of the plasma by W, which could eventually lead to an increased disruptivity. Modelling with the non-linear MHD code JOREK of the physics processes determining the flow of energy from the confined plasma onto the plasma-facing components during ELMs at the ITER scale shows that the relative contribution of conductive and convective losses is intrinsically linked to the magnitude of the ELM energy loss. Modelling of the triggering of ELMs by pellet injection for DIII-D and ITER has identified the minimum pellet size required to trigger ELMs and, from this, the required fuel throughput for the application of this technique to ITER is evaluated and shown to be compatible with the installed fuelling and tritium re-processing capabilities in ITER. The evaluation of the capabilities of the ELM control coil system in ITER for ELM suppression is carried out (in the vacuum approximation) and found to have a factor of ˜2 margin in terms of coil current to achieve its design criterion, although such a margin could be substantially reduced when plasma shielding effects are taken into account. The consequences for the spatial distribution of the power fluxes at the divertor of ELM control by three-dimensional (3D) fields are evaluated and found to lead to substantial toroidal asymmetries in zones of the divertor target away from the separatrix. Therefore, specifications for the rotation of the 3D perturbation applied for ELM control in order to avoid excessive localized erosion of the ITER divertor target are derived. It is shown that a rotation frequency in excess of 1 Hz for the whole toroidally asymmetric divertor power flux pattern is required (corresponding to n Hz frequency in the variation of currents in the coils, where n is the toroidal symmetry of the perturbation applied) in order to avoid unacceptable thermal cycling of the divertor target for the highest power fluxes and worst toroidal power flux asymmetries expected. The possible use of the in-vessel vertical stability coils for ELM control as a back-up to the main ELM control systems in ITER is described and the feasibility of its application to control ELMs in low plasma current H-modes, foreseen for initial ITER operation, is evaluated and found to be viable for plasma currents up to 5-10 MA depending on modelling assumptions.

Fast implementations of reconstruction-based scatter compensation in fully 3D SPECT image reconstruction

NASA Astrophysics Data System (ADS)

Kadrmas, Dan J.; Frey, Eric C.; Karimi, Seemeen S.; Tsui, Benjamin M. W.

1998-04-01

Accurate scatter compensation in SPECT can be performed by modelling the scatter response function during the reconstruction process. This method is called reconstruction-based scatter compensation (RBSC). It has been shown that RBSC has a number of advantages over other methods of compensating for scatter, but using RBSC for fully 3D compensation has resulted in prohibitively long reconstruction times. In this work we propose two new methods that can be used in conjunction with existing methods to achieve marked reductions in RBSC reconstruction times. The first method, coarse-grid scatter modelling, significantly accelerates the scatter model by exploiting the fact that scatter is dominated by low-frequency information. The second method, intermittent RBSC, further accelerates the reconstruction process by limiting the number of iterations during which scatter is modelled. The fast implementations were evaluated using a Monte Carlo simulated experiment of the 3D MCAT phantom with tracer, and also using experimentally acquired data with tracer. Results indicated that these fast methods can reconstruct, with fully 3D compensation, images very similar to those obtained using standard RBSC methods, and in reconstruction times that are an order of magnitude shorter. Using these methods, fully 3D iterative reconstruction with RBSC can be performed well within the realm of clinically realistic times (under 10 minutes for image reconstruction).

Design and Prototyping of a Satellite Antenna Slew Testbed

DTIC Science & Technology

2013-12-01

polycarbonate plastic PC personal computer PD proportional derivative PDO process data objects PVC polyvinyl chloride PVT position...part. The CAD model of the current design iteration can be exported to 3D printer to produce a plastic prototype of the testbed assembly. The 3D... extruded shaft) and connected by set screws as shown in Figure 8. The set screws translate the force from motor to gears to shaft, thus creating an

Parameter selection with the Hotelling observer in linear iterative image reconstruction for breast tomosynthesis

NASA Astrophysics Data System (ADS)

Rose, Sean D.; Roth, Jacob; Zimmerman, Cole; Reiser, Ingrid; Sidky, Emil Y.; Pan, Xiaochuan

2018-03-01

In this work we investigate an efficient implementation of a region-of-interest (ROI) based Hotelling observer (HO) in the context of parameter optimization for detection of a rod signal at two orientations in linear iterative image reconstruction for DBT. Our preliminary results suggest that ROI-HO performance trends may be efficiently estimated by modeling only the 2D plane perpendicular to the detector and containing the X-ray source trajectory. In addition, the ROI-HO is seen to exhibit orientation dependent trends in detectability as a function of the regularization strength employed in reconstruction. To further investigate the ROI-HO performance in larger 3D system models, we present and validate an iterative methodology for calculating the ROI-HO. Lastly, we present a real data study investigating the correspondence between ROI-HO performance trends and signal conspicuity. Conspicuity of signals in real data reconstructions is seen to track well with trends in ROI-HO detectability. In particular, we observe orientation dependent conspicuity matching the orientation dependent detectability of the ROI-HO.

An efficient flexible-order model for 3D nonlinear water waves

NASA Astrophysics Data System (ADS)

Engsig-Karup, A. P.; Bingham, H. B.; Lindberg, O.

2009-04-01

The flexible-order, finite difference based fully nonlinear potential flow model described in [H.B. Bingham, H. Zhang, On the accuracy of finite difference solutions for nonlinear water waves, J. Eng. Math. 58 (2007) 211-228] is extended to three dimensions (3D). In order to obtain an optimal scaling of the solution effort multigrid is employed to precondition a GMRES iterative solution of the discretized Laplace problem. A robust multigrid method based on Gauss-Seidel smoothing is found to require special treatment of the boundary conditions along solid boundaries, and in particular on the sea bottom. A new discretization scheme using one layer of grid points outside the fluid domain is presented and shown to provide convergent solutions over the full physical and discrete parameter space of interest. Linear analysis of the fundamental properties of the scheme with respect to accuracy, robustness and energy conservation are presented together with demonstrations of grid independent iteration count and optimal scaling of the solution effort. Calculations are made for 3D nonlinear wave problems for steep nonlinear waves and a shoaling problem which show good agreement with experimental measurements and other calculations from the literature.

Joint Calibration of 3d Laser Scanner and Digital Camera Based on Dlt Algorithm

NASA Astrophysics Data System (ADS)

Gao, X.; Li, M.; Xing, L.; Liu, Y.

2018-04-01

Design a calibration target that can be scanned by 3D laser scanner while shot by digital camera, achieving point cloud and photos of a same target. A method to joint calibrate 3D laser scanner and digital camera based on Direct Linear Transformation algorithm was proposed. This method adds a distortion model of digital camera to traditional DLT algorithm, after repeating iteration, it can solve the inner and external position element of the camera as well as the joint calibration of 3D laser scanner and digital camera. It comes to prove that this method is reliable.

Adaptive finite element modelling of three-dimensional magnetotelluric fields in general anisotropic media

NASA Astrophysics Data System (ADS)

Liu, Ying; Xu, Zhenhuan; Li, Yuguo

2018-04-01

We present a goal-oriented adaptive finite element (FE) modelling algorithm for 3-D magnetotelluric fields in generally anisotropic conductivity media. The model consists of a background layered structure, containing anisotropic blocks. Each block and layer might be anisotropic by assigning to them 3 × 3 conductivity tensors. The second-order partial differential equations are solved using the adaptive finite element method (FEM). The computational domain is subdivided into unstructured tetrahedral elements, which allow for complex geometries including bathymetry and dipping interfaces. The grid refinement process is guided by a global posteriori error estimator and is performed iteratively. The system of linear FE equations for electric field E is solved with a direct solver MUMPS. Then the magnetic field H can be found, in which the required derivatives are computed numerically using cubic spline interpolation. The 3-D FE algorithm has been validated by comparisons with both the 3-D finite-difference solution and 2-D FE results. Two model types are used to demonstrate the effects of anisotropy upon 3-D magnetotelluric responses: horizontal and dipping anisotropy. Finally, a 3D sea hill model is modelled to study the effect of oblique interfaces and the dipping anisotropy.

3D reconstruction of the magnetic vector potential using model based iterative reconstruction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Prabhat, K. C.; Aditya Mohan, K.; Phatak, Charudatta

Lorentz transmission electron microscopy (TEM) observations of magnetic nanoparticles contain information on the magnetic and electrostatic potentials. Vector field electron tomography (VFET) can be used to reconstruct electromagnetic potentials of the nanoparticles from their corresponding LTEM images. The VFET approach is based on the conventional filtered back projection approach to tomographic reconstructions and the availability of an incomplete set of measurements due to experimental limitations means that the reconstructed vector fields exhibit significant artifacts. In this paper, we outline a model-based iterative reconstruction (MBIR) algorithm to reconstruct the magnetic vector potential of magnetic nanoparticles. We combine a forward model formore » image formation in TEM experiments with a prior model to formulate the tomographic problem as a maximum a-posteriori probability estimation problem (MAP). The MAP cost function is minimized iteratively to determine the vector potential. Here, a comparative reconstruction study of simulated as well as experimental data sets show that the MBIR approach yields quantifiably better reconstructions than the VFET approach.« less

3D reconstruction of the magnetic vector potential using model based iterative reconstruction.

PubMed

Prabhat, K C; Aditya Mohan, K; Phatak, Charudatta; Bouman, Charles; De Graef, Marc

2017-11-01

Lorentz transmission electron microscopy (TEM) observations of magnetic nanoparticles contain information on the magnetic and electrostatic potentials. Vector field electron tomography (VFET) can be used to reconstruct electromagnetic potentials of the nanoparticles from their corresponding LTEM images. The VFET approach is based on the conventional filtered back projection approach to tomographic reconstructions and the availability of an incomplete set of measurements due to experimental limitations means that the reconstructed vector fields exhibit significant artifacts. In this paper, we outline a model-based iterative reconstruction (MBIR) algorithm to reconstruct the magnetic vector potential of magnetic nanoparticles. We combine a forward model for image formation in TEM experiments with a prior model to formulate the tomographic problem as a maximum a-posteriori probability estimation problem (MAP). The MAP cost function is minimized iteratively to determine the vector potential. A comparative reconstruction study of simulated as well as experimental data sets show that the MBIR approach yields quantifiably better reconstructions than the VFET approach. Copyright © 2017 Elsevier B.V. All rights reserved.

3D reconstruction of the magnetic vector potential using model based iterative reconstruction

DOE PAGES

Prabhat, K. C.; Aditya Mohan, K.; Phatak, Charudatta; ...

2017-07-03

Lorentz transmission electron microscopy (TEM) observations of magnetic nanoparticles contain information on the magnetic and electrostatic potentials. Vector field electron tomography (VFET) can be used to reconstruct electromagnetic potentials of the nanoparticles from their corresponding LTEM images. The VFET approach is based on the conventional filtered back projection approach to tomographic reconstructions and the availability of an incomplete set of measurements due to experimental limitations means that the reconstructed vector fields exhibit significant artifacts. In this paper, we outline a model-based iterative reconstruction (MBIR) algorithm to reconstruct the magnetic vector potential of magnetic nanoparticles. We combine a forward model formore » image formation in TEM experiments with a prior model to formulate the tomographic problem as a maximum a-posteriori probability estimation problem (MAP). The MAP cost function is minimized iteratively to determine the vector potential. Here, a comparative reconstruction study of simulated as well as experimental data sets show that the MBIR approach yields quantifiably better reconstructions than the VFET approach.« less

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wingen, A.; Wilcox, R. S.; Seal, S. K.

In this paper, large, spontaneous m/n = 1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional tomore » $$({\\rm d}p/{\\rm d}\\rho)/B_t^2$$ around q = 1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. In conclusion, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.« less

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

DOE PAGES

Wingen, A.; Wilcox, R. S.; Seal, S. K.; ...

2018-01-15

In this paper, large, spontaneous m/n = 1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional tomore » $$({\\rm d}p/{\\rm d}\\rho)/B_t^2$$ around q = 1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. In conclusion, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.« less

Registration of terrestrial mobile laser data on 2D or 3D geographic database by use of a non-rigid ICP approach.

NASA Astrophysics Data System (ADS)

Monnier, F.; Vallet, B.; Paparoditis, N.; Papelard, J.-P.; David, N.

2013-10-01

This article presents a generic and efficient method to register terrestrial mobile data with imperfect location on a geographic database with better overall accuracy but less details. The registration method proposed in this paper is based on a semi-rigid point to plane ICP ("Iterative Closest Point"). The main applications of such registration is to improve existing geographic databases, particularly in terms of accuracy, level of detail and diversity of represented objects. Other applications include fine geometric modelling and fine façade texturing, object extraction such as trees, poles, road signs marks, facilities, vehicles, etc. The geopositionning system of mobile mapping systems is affected by GPS masks that are only partially corrected by an Inertial Navigation System (INS) which can cause an important drift. As this drift varies non-linearly, but slowly in time, it will be modelled by a translation defined as a piecewise linear function of time which variation over time will be minimized (rigidity term). For each iteration of the ICP, the drift is estimated in order to minimise the distance between laser points and planar model primitives (data attachment term). The method has been tested on real data (a scan of the city of Paris of 3.6 million laser points registered on a 3D model of approximately 71,400 triangles).

Prospects for steady-state scenarios on JET

NASA Astrophysics Data System (ADS)

Litaudon, X.; Bizarro, J. P. S.; Challis, C. D.; Crisanti, F.; DeVries, P. C.; Lomas, P.; Rimini, F. G.; Tala, T. J. J.; Akers, R.; Andrew, Y.; Arnoux, G.; Artaud, J. F.; Baranov, Yu F.; Beurskens, M.; Brix, M.; Cesario, R.; DeLa Luna, E.; Fundamenski, W.; Giroud, C.; Hawkes, N. C.; Huber, A.; Joffrin, E.; Pitts, R. A.; Rachlew, E.; Reyes-Cortes, S. D. A.; Sharapov, S. E.; Zastrow, K. D.; Zimmermann, O.; JET EFDA contributors, the

2007-09-01

In the 2006 experimental campaign, progress has been made on JET to operate non-inductive scenarios at higher applied powers (31 MW) and density (nl ~ 4 × 1019 m-3), with ITER-relevant safety factor (q95 ~ 5) and plasma shaping, taking advantage of the new divertor capabilities. The extrapolation of the performance using transport modelling benchmarked on the experimental database indicates that the foreseen power upgrade (~45 MW) will allow the development of non-inductive scenarios where the bootstrap current is maximized together with the fusion yield and not, as in present-day experiments, at its expense. The tools for the long-term JET programme are the new ITER-like ICRH antenna (~15 MW), an upgrade of the NB power (35 MW/20 s or 17.5 MW/40 s), a new ITER-like first wall, a new pellet injector for edge localized mode control together with improved diagnostic and control capability. Operation with the new wall will set new constraints on non-inductive scenarios that are already addressed experimentally and in the modelling. The fusion performance and driven current that could be reached at high density and power have been estimated using either 0D or 1-1/2D validated transport models. In the high power case (45 MW), the calculations indicate the potential for the operational space of the non-inductive regime to be extended in terms of current (~2.5 MA) and density (nl > 5 × 1019 m-3), with high βN (βN > 3.0) and a fraction of the bootstrap current within 60-70% at high toroidal field (~3.5 T).

Use of reconstructed 3D equilibria to determine onset conditions of helical cores in tokamaks for extrapolation to ITER

NASA Astrophysics Data System (ADS)

Wingen, A.; Wilcox, R. S.; Seal, S. K.; Unterberg, E. A.; Cianciosa, M. R.; Delgado-Aparicio, L. F.; Hirshman, S. P.; Lao, L. L.

2018-03-01

Large, spontaneous m/n  =  1/1 helical cores are shown to be expected in tokamaks such as ITER with extended regions of low- or reversed- magnetic shear profiles and q near 1 in the core. The threshold for this spontaneous symmetry breaking is determined using VMEC scans, beginning with reconstructed 3D equilibria from DIII-D and Alcator C-Mod based on observed internal 3D deformations. The helical core is a saturated internal kink mode (Wesson 1986 Plasma Phys. Control. Fusion 28 243); its onset threshold is shown to be proportional to (dp/dρ)/B_t2 around q  =  1. Below the threshold, applied 3D fields can drive a helical core to finite size, as in DIII-D. The helical core size thereby depends on the magnitude of the applied perturbation. Above it, a small, random 3D kick causes a bifurcation from axisymmetry and excites a spontaneous helical core, which is independent of the kick size. Systematic scans of the q-profile show that the onset threshold is very sensitive to the q-shear in the core. Helical cores occur frequently in Alcator C-Mod during ramp-up when slow current penetration results in a reversed shear q-profile, which is favorable for helical core formation. Finally, a comparison of the helical core onset threshold for discharges from DIII-D, Alcator C-Mod and ITER confirms that while DIII-D is marginally stable, Alcator C-Mod and especially ITER are highly susceptible to helical core formation without being driven by an externally applied 3D magnetic field.

Modeling and Analysis of Alternative Concept of ITER Vacuum Vessel Primary Heat Transfer System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carbajo, Juan J; Yoder Jr, Graydon L; Dell'Orco, Giovanni

2010-01-01

A RELAP5-3D model of the ITER (Latin for the way ) vacuum vessel (VV) primary heat transfer system has been developed to evaluate a proposed design change that relocates the heat exchangers (HXs) from the exterior of the tokamak building to the interior. This alternative design protects the HXs from external hazards such as wind, tornado, and aircraft crash. The proposed design integrates the VV HXs into a VV pressure suppression system (VVPSS) tank that contains water to condense vapour in case of a leak into the plasma chamber. The proposal is to also use this water as the ultimatemore » sink when removing decay heat from the VV system. The RELAP5-3D model has been run under normal operating and abnormal (decay heat) conditions. Results indicate that this alternative design is feasible, with no effects on the VVPSS tank under normal operation and with tank temperature and pressure increasing under decay heat conditions resulting in a requirement to remove steam generated if the VVPSS tank low pressure must be maintained.« less

Extrapolation of the DIII-D high poloidal beta scenario to ITER steady-state using transport modeling

NASA Astrophysics Data System (ADS)

McClenaghan, J.; Garofalo, A. M.; Meneghini, O.; Smith, S. P.

2016-10-01

Transport modeling of a proposed ITER steady-state scenario based on DIII-D high βP discharges finds that the core confinement may be improved with either sufficient rotation or a negative central shear q-profile. The high poloidal beta scenario is characterized by a large bootstrap current fraction( 80%) which reduces the demands on the external current drive, and a large radius internal transport barrier which is associated with improved normalized confinement. Typical temperature and density profiles from the non-inductive high poloidal beta scenario on DIII-D are scaled according to 0D modeling predictions of the requirements for achieving Q=5 steady state performance in ITER with ``day one'' H&CD capabilities. Then, TGLF turbulence modeling is carried out under systematic variations of the toroidal rotation and the core q-profile. Either strong negative central magnetic shear or rotation are found to successfully provide the turbulence suppression required to maintain the temperature and density profiles. This work supported by the US Department of Energy under DE-FC02-04ER54698.

Advances in the steady-state hybrid regime in DIII-D – a fully non-inductive, ELM-suppressed scenario for ITER

DOE PAGES

Petty, Craig C.; Nazikian, Raffi; Park, Jin Myung; ...

2017-07-19

Here, the hybrid regime with beta, collisionality, safety factor and plasma shape relevant to the ITER steady-state mission has been successfully integrated with ELM suppression by applying an odd parity n=3 resonant magnetic perturbation (RMP). Fully non-inductive hybrids in the DIII-D tokamak with high beta (β ≤ 2.8%) and high confinement (98y2 ≤ 1.4) in the ITER similar shape have achieved zero surface loop voltage for up to two current relaxation times using efficient central current drive from ECCD and NBCD. The n=3 RMP causes surprisingly little increase in thermal transport during ELM suppression. Poloidal magnetic flux pumping in hybridmore » plasmas maintains q above 1 without loss of current drive efficiency, except that experiments show that extremely peaked ECCD profiles can create sawteeth. During ECCD, Alfvén eigenmode (AE) activity is replaced by a more benign fishbone-like mode, reducing anomalous beam ion diffusion by a factor of 2. While the electron and ion thermal diffusivities substantially increase with higher ECCD power, the loss of confinement can be offset by the decreased fast ion transport resulting from AE suppression. Extrapolations from DIII-D along a dimensionless parameter scaling path as well as those using self-consistent theory-based modeling show that these ELM-suppressed, fully non-inductive hybrids can achieve the Q = 5 ITER steady-state mission.« less

THERMAL DESIGN OF THE ITER VACUUM VESSEL COOLING SYSTEM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carbajo, Juan J; Yoder Jr, Graydon L; Kim, Seokho H

RELAP5-3D models of the ITER Vacuum Vessel (VV) Primary Heat Transfer System (PHTS) have been developed. The design of the cooling system is described in detail, and RELAP5 results are presented. Two parallel pump/heat exchanger trains comprise the design one train is for full-power operation and the other is for emergency operation or operation at decay heat levels. All the components are located inside the Tokamak building (a significant change from the original configurations). The results presented include operation at full power, decay heat operation, and baking operation. The RELAP5-3D results confirm that the design can operate satisfactorily during bothmore » normal pulsed power operation and decay heat operation. All the temperatures in the coolant and in the different system components are maintained within acceptable operating limits.« less

Modeling defect trends for iterative development

NASA Technical Reports Server (NTRS)

Powell, J. D.; Spanguolo, J. N.

2003-01-01

The Employment of Defects (EoD) approach to measuring and analyzing defects seeks to identify and capture trends and phenomena that are critical to managing software quality in the iterative software development lifecycle at JPL.

Ultra-low-dose computed tomographic angiography with model-based iterative reconstruction compared with standard-dose imaging after endovascular aneurysm repair: a prospective pilot study.

PubMed

Naidu, Sailen G; Kriegshauser, J Scott; Paden, Robert G; He, Miao; Wu, Qing; Hara, Amy K

2014-12-01

An ultra-low-dose radiation protocol reconstructed with model-based iterative reconstruction was compared with our standard-dose protocol. This prospective study evaluated 20 men undergoing surveillance-enhanced computed tomography after endovascular aneurysm repair. All patients underwent standard-dose and ultra-low-dose venous phase imaging; images were compared after reconstruction with filtered back projection, adaptive statistical iterative reconstruction, and model-based iterative reconstruction. Objective measures of aortic contrast attenuation and image noise were averaged. Images were subjectively assessed (1 = worst, 5 = best) for diagnostic confidence, image noise, and vessel sharpness. Aneurysm sac diameter and endoleak detection were compared. Quantitative image noise was 26% less with ultra-low-dose model-based iterative reconstruction than with standard-dose adaptive statistical iterative reconstruction and 58% less than with ultra-low-dose adaptive statistical iterative reconstruction. Average subjective noise scores were not different between ultra-low-dose model-based iterative reconstruction and standard-dose adaptive statistical iterative reconstruction (3.8 vs. 4.0, P = .25). Subjective scores for diagnostic confidence were better with standard-dose adaptive statistical iterative reconstruction than with ultra-low-dose model-based iterative reconstruction (4.4 vs. 4.0, P = .002). Vessel sharpness was decreased with ultra-low-dose model-based iterative reconstruction compared with standard-dose adaptive statistical iterative reconstruction (3.3 vs. 4.1, P < .0001). Ultra-low-dose model-based iterative reconstruction and standard-dose adaptive statistical iterative reconstruction aneurysm sac diameters were not significantly different (4.9 vs. 4.9 cm); concordance for the presence of endoleak was 100% (P < .001). Compared with a standard-dose technique, an ultra-low-dose model-based iterative reconstruction protocol provides comparable image quality and diagnostic assessment at a 73% lower radiation dose.

Solution of the weighted symmetric similarity transformations based on quaternions

NASA Astrophysics Data System (ADS)

Mercan, H.; Akyilmaz, O.; Aydin, C.

2017-12-01

A new method through Gauss-Helmert model of adjustment is presented for the solution of the similarity transformations, either 3D or 2D, in the frame of errors-in-variables (EIV) model. EIV model assumes that all the variables in the mathematical model are contaminated by random errors. Total least squares estimation technique may be used to solve the EIV model. Accounting for the heteroscedastic uncertainty both in the target and the source coordinates, that is the more common and general case in practice, leads to a more realistic estimation of the transformation parameters. The presented algorithm can handle the heteroscedastic transformation problems, i.e., positions of the both target and the source points may have full covariance matrices. Therefore, there is no limitation such as the isotropic or the homogenous accuracy for the reference point coordinates. The developed algorithm takes the advantage of the quaternion definition which uniquely represents a 3D rotation matrix. The transformation parameters: scale, translations, and the quaternion (so that the rotation matrix) along with their covariances, are iteratively estimated with rapid convergence. Moreover, prior least squares (LS) estimation of the unknown transformation parameters is not required to start the iterations. We also show that the developed method can also be used to estimate the 2D similarity transformation parameters by simply treating the problem as a 3D transformation problem with zero (0) values assigned for the z-components of both target and source points. The efficiency of the new algorithm is presented with the numerical examples and comparisons with the results of the previous studies which use the same data set. Simulation experiments for the evaluation and comparison of the proposed and the conventional weighted LS (WLS) method is also presented.

Installation and Testing of ITER Integrated Modeling and Analysis Suite (IMAS) on DIII-D

NASA Astrophysics Data System (ADS)

Lao, L.; Kostuk, M.; Meneghini, O.; Smith, S.; Staebler, G.; Kalling, R.; Pinches, S.

2017-10-01

A critical objective of the ITER Integrated Modeling Program is the development of IMAS to support ITER plasma operation and research activities. An IMAS framework has been established based on the earlier work carried out within the EU. It consists of a physics data model and a workflow engine. The data model is capable of representing both simulation and experimental data and is applicable to ITER and other devices. IMAS has been successfully installed on a local DIII-D server using a flexible installer capable of managing the core data access tools (Access Layer and Data Dictionary) and optionally the Kepler workflow engine and coupling tools. A general adaptor for OMFIT (a workflow engine) is being built for adaptation of any analysis code to IMAS using a new IMAS universal access layer (UAL) interface developed from an existing OMFIT EU Integrated Tokamak Modeling UAL. Ongoing work includes development of a general adaptor for EFIT and TGLF based on this new UAL that can be readily extended for other physics codes within OMFIT. Work supported by US DOE under DE-FC02-04ER54698.

Stability of the iterative solutions of integral equations as one phase freezing criterion.

PubMed

Fantoni, R; Pastore, G

2003-10-01

A recently proposed connection between the threshold for the stability of the iterative solution of integral equations for the pair correlation functions of a classical fluid and the structural instability of the corresponding real fluid is carefully analyzed. Direct calculation of the Lyapunov exponent of the standard iterative solution of hypernetted chain and Percus-Yevick integral equations for the one-dimensional (1D) hard rods fluid shows the same behavior observed in 3D systems. Since no phase transition is allowed in such 1D system, our analysis shows that the proposed one phase criterion, at least in this case, fails. We argue that the observed proximity between the numerical and the structural instability in 3D originates from the enhanced structure present in the fluid but, in view of the arbitrary dependence on the iteration scheme, it seems uneasy to relate the numerical stability analysis to a robust one-phase criterion for predicting a thermodynamic phase transition.

Numerical modeling of the radiative transfer in a turbid medium using the synthetic iteration.

PubMed

Budak, Vladimir P; Kaloshin, Gennady A; Shagalov, Oleg V; Zheltov, Victor S

2015-07-27

In this paper we propose the fast, but the accurate algorithm for numerical modeling of light fields in the turbid media slab. For the numerical solution of the radiative transfer equation (RTE) it is required its discretization based on the elimination of the solution anisotropic part and the replacement of the scattering integral by a finite sum. The solution regular part is determined numerically. A good choice of the method of the solution anisotropic part elimination determines the high convergence of the algorithm in the mean square metric. The method of synthetic iterations can be used to improve the convergence in the uniform metric. A significant increase in the solution accuracy with the use of synthetic iterations allows applying the two-stream approximation for the regular part determination. This approach permits to generalize the proposed method in the case of an arbitrary 3D geometry of the medium.

Global Adjoint Tomography - Hotspots and Slabs

NASA Astrophysics Data System (ADS)

Ruan, Y.; Lei, W.; Lefebvre, M. P.; Modrak, R. T.; Smith, J. A.; Orsvuran, R.; Bozdag, E.; Tromp, J.

2017-12-01

Plumes rise from the deep mantle due to thermal or/and chemical buoyancy, forming hotspots at the surface, and oceanic plates subduct underneath continents, piling up at discontinuities or sinking down to the core-mantle boundary. Despite these basic convection mechanisms, many questions remain about the origin of mantle plumes, slab subduction, their interaction with mantle convection, and their relationship with the large low shear velocity provinces (LLSVPs) at the base of the mantle. Plume and slab morphology at depth provide further insight into these questions but imaging them in the mid and lower mantle is known to be very challenging due to a lack of data coverage and resolvability limits of conventional body-wave traveltime tomography. The deployment of regional dense arrays (e.g., USArray) and development of full waveform inversion techniques provide opportunities to resolve finer 3D details of mantle plumes and slabs. Harnessing the power of supercomputer ''Titan'' at Oak Ridge National Laboratory, we employed a spectral-element method to accurately simulate seismograms in complex 3D Earth models and an adjoint method to obtain model updates. Bozdag et al. (2016) iteratively determined a transversely isotropic earth model (GLAD_M15) using 253 events. To achieve higher resolution and better coverage in the deep mantle, we expanded our database to 1,040 events; a 1/3 of them are deep earthquakes (>500 km). We reinverted source parameters using model GLAD_M15, recalculated synthetic seismograms, selected time windows that show good agreement between data and the synthetics, and made measurements within these windows. From the measurements, we further assess the overall quality of each event and station and exclude bad measurements using very conservative criteria. Thus far, we assimilated more than 10 million windows in three period bands from 17-250 s. As the model improves, we correct the centroid time and scalar moment of each event using its mean traveltime and amplitude anomalies and reselect windows after each iteration to include more measurements. So far, we have finished 5 iterations and found prominent fine-scale features of mantle plumes, especially in areas with sparse data coverage (e.g., Hoggar, Reunion). We expect to finish 4-5 more iterations and present the results of these iterations.

Uniscale multi-view registration using double dog-leg method

NASA Astrophysics Data System (ADS)

Chen, Chao-I.; Sargent, Dusty; Tsai, Chang-Ming; Wang, Yuan-Fang; Koppel, Dan

2009-02-01

3D computer models of body anatomy can have many uses in medical research and clinical practices. This paper describes a robust method that uses videos of body anatomy to construct multiple, partial 3D structures and then fuse them to form a larger, more complete computer model using the structure-from-motion framework. We employ the Double Dog-Leg (DDL) method, a trust-region based nonlinear optimization method, to jointly optimize the camera motion parameters (rotation and translation) and determine a global scale that all partial 3D structures should agree upon. These optimized motion parameters are used for constructing local structures, and the global scale is essential for multi-view registration after all these partial structures are built. In order to provide a good initial guess of the camera movement parameters and outlier free 2D point correspondences for DDL, we also propose a two-stage scheme where multi-RANSAC with a normalized eight-point algorithm is first performed and then a few iterations of an over-determined five-point algorithm is used to polish the results. Our experimental results using colonoscopy video show that the proposed scheme always produces more accurate outputs than the standard RANSAC scheme. Furthermore, since we have obtained many reliable point correspondences, time-consuming and error-prone registration methods like the iterative closest points (ICP) based algorithms can be replaced by a simple rigid-body transformation solver when merging partial structures into a larger model.

Virtual environment display for a 3D audio room simulation

NASA Technical Reports Server (NTRS)

Chapin, William L.; Foster, Scott H.

1992-01-01

The development of a virtual environment simulation system integrating a 3D acoustic audio model with an immersive 3D visual scene is discussed. The system complements the acoustic model and is specified to: allow the listener to freely move about the space, a room of manipulable size, shape, and audio character, while interactively relocating the sound sources; reinforce the listener's feeling of telepresence in the acoustical environment with visual and proprioceptive sensations; enhance the audio with the graphic and interactive components, rather than overwhelm or reduce it; and serve as a research testbed and technology transfer demonstration. The hardware/software design of two demonstration systems, one installed and one portable, are discussed through the development of four iterative configurations.

Motion and positional error correction for cone beam 3D-reconstruction with mobile C-arms.

PubMed

Bodensteiner, C; Darolti, C; Schumacher, H; Matthäus, L; Schweikard, A

2007-01-01

CT-images acquired by mobile C-arm devices can contain artefacts caused by positioning errors. We propose a data driven method based on iterative 3D-reconstruction and 2D/3D-registration to correct projection data inconsistencies. With a 2D/3D-registration algorithm, transformations are computed to align the acquired projection images to a previously reconstructed volume. In an iterative procedure, the reconstruction algorithm uses the results of the registration step. This algorithm also reduces small motion artefacts within 3D-reconstructions. Experiments with simulated projections from real patient data show the feasibility of the proposed method. In addition, experiments with real projection data acquired with an experimental robotised C-arm device have been performed with promising results.

Improved dose-volume histogram estimates for radiopharmaceutical therapy by optimizing quantitative SPECT reconstruction parameters

NASA Astrophysics Data System (ADS)

Cheng, Lishui; Hobbs, Robert F.; Segars, Paul W.; Sgouros, George; Frey, Eric C.

2013-06-01

In radiopharmaceutical therapy, an understanding of the dose distribution in normal and target tissues is important for optimizing treatment. Three-dimensional (3D) dosimetry takes into account patient anatomy and the nonuniform uptake of radiopharmaceuticals in tissues. Dose-volume histograms (DVHs) provide a useful summary representation of the 3D dose distribution and have been widely used for external beam treatment planning. Reliable 3D dosimetry requires an accurate 3D radioactivity distribution as the input. However, activity distribution estimates from SPECT are corrupted by noise and partial volume effects (PVEs). In this work, we systematically investigated OS-EM based quantitative SPECT (QSPECT) image reconstruction in terms of its effect on DVHs estimates. A modified 3D NURBS-based Cardiac-Torso (NCAT) phantom that incorporated a non-uniform kidney model and clinically realistic organ activities and biokinetics was used. Projections were generated using a Monte Carlo (MC) simulation; noise effects were studied using 50 noise realizations with clinical count levels. Activity images were reconstructed using QSPECT with compensation for attenuation, scatter and collimator-detector response (CDR). Dose rate distributions were estimated by convolution of the activity image with a voxel S kernel. Cumulative DVHs were calculated from the phantom and QSPECT images and compared both qualitatively and quantitatively. We found that noise, PVEs, and ringing artifacts due to CDR compensation all degraded histogram estimates. Low-pass filtering and early termination of the iterative process were needed to reduce the effects of noise and ringing artifacts on DVHs, but resulted in increased degradations due to PVEs. Large objects with few features, such as the liver, had more accurate histogram estimates and required fewer iterations and more smoothing for optimal results. Smaller objects with fine details, such as the kidneys, required more iterations and less smoothing at early time points post-radiopharmaceutical administration but more smoothing and fewer iterations at later time points when the total organ activity was lower. The results of this study demonstrate the importance of using optimal reconstruction and regularization parameters. Optimal results were obtained with different parameters at each time point, but using a single set of parameters for all time points produced near-optimal dose-volume histograms.

High-Performance Agent-Based Modeling Applied to Vocal Fold Inflammation and Repair.

PubMed

Seekhao, Nuttiiya; Shung, Caroline; JaJa, Joseph; Mongeau, Luc; Li-Jessen, Nicole Y K

2018-01-01

Fast and accurate computational biology models offer the prospect of accelerating the development of personalized medicine. A tool capable of estimating treatment success can help prevent unnecessary and costly treatments and potential harmful side effects. A novel high-performance Agent-Based Model (ABM) was adopted to simulate and visualize multi-scale complex biological processes arising in vocal fold inflammation and repair. The computational scheme was designed to organize the 3D ABM sub-tasks to fully utilize the resources available on current heterogeneous platforms consisting of multi-core CPUs and many-core GPUs. Subtasks are further parallelized and convolution-based diffusion is used to enhance the performance of the ABM simulation. The scheme was implemented using a client-server protocol allowing the results of each iteration to be analyzed and visualized on the server (i.e., in-situ ) while the simulation is running on the same server. The resulting simulation and visualization software enables users to interact with and steer the course of the simulation in real-time as needed. This high-resolution 3D ABM framework was used for a case study of surgical vocal fold injury and repair. The new framework is capable of completing the simulation, visualization and remote result delivery in under 7 s per iteration, where each iteration of the simulation represents 30 min in the real world. The case study model was simulated at the physiological scale of a human vocal fold. This simulation tracks 17 million biological cells as well as a total of 1.7 billion signaling chemical and structural protein data points. The visualization component processes and renders all simulated biological cells and 154 million signaling chemical data points. The proposed high-performance 3D ABM was verified through comparisons with empirical vocal fold data. Representative trends of biomarker predictions in surgically injured vocal folds were observed.

High-Performance Agent-Based Modeling Applied to Vocal Fold Inflammation and Repair

PubMed Central

Seekhao, Nuttiiya; Shung, Caroline; JaJa, Joseph; Mongeau, Luc; Li-Jessen, Nicole Y. K.

2018-01-01

Fast and accurate computational biology models offer the prospect of accelerating the development of personalized medicine. A tool capable of estimating treatment success can help prevent unnecessary and costly treatments and potential harmful side effects. A novel high-performance Agent-Based Model (ABM) was adopted to simulate and visualize multi-scale complex biological processes arising in vocal fold inflammation and repair. The computational scheme was designed to organize the 3D ABM sub-tasks to fully utilize the resources available on current heterogeneous platforms consisting of multi-core CPUs and many-core GPUs. Subtasks are further parallelized and convolution-based diffusion is used to enhance the performance of the ABM simulation. The scheme was implemented using a client-server protocol allowing the results of each iteration to be analyzed and visualized on the server (i.e., in-situ) while the simulation is running on the same server. The resulting simulation and visualization software enables users to interact with and steer the course of the simulation in real-time as needed. This high-resolution 3D ABM framework was used for a case study of surgical vocal fold injury and repair. The new framework is capable of completing the simulation, visualization and remote result delivery in under 7 s per iteration, where each iteration of the simulation represents 30 min in the real world. The case study model was simulated at the physiological scale of a human vocal fold. This simulation tracks 17 million biological cells as well as a total of 1.7 billion signaling chemical and structural protein data points. The visualization component processes and renders all simulated biological cells and 154 million signaling chemical data points. The proposed high-performance 3D ABM was verified through comparisons with empirical vocal fold data. Representative trends of biomarker predictions in surgically injured vocal folds were observed. PMID:29706894

Three-D Flow Analysis of the Alternate SSME HPOT TAD

NASA Technical Reports Server (NTRS)

Kubinski, Cheryl A.

1993-01-01

This paper describes the results of numerical flow analyses performed in support of design development of the Space Shuttle Main Engine Alternate High Pressure Oxidizer Turbine Turn-around duct (TAD). The flow domain has been modeled using a 3D, Navier-Stokes, general purpose flow solver. The goal of this effort is to achieve an alternate TAD exit flow distribution which closely matches that of the baseline configuration. 3D Navier Stokes CFD analyses were employed to evaluate numerous candidate geometry modifications to the TAD flowpath in order to achieve this goal. The design iterations are summarized, as well as a description of the computational model, numerical results and the conclusions based on these calculations.

Iterative reconstruction of volumetric particle distribution

NASA Astrophysics Data System (ADS)

Wieneke, Bernhard

2013-02-01

For tracking the motion of illuminated particles in space and time several volumetric flow measurement techniques are available like 3D-particle tracking velocimetry (3D-PTV) recording images from typically three to four viewing directions. For higher seeding densities and the same experimental setup, tomographic PIV (Tomo-PIV) reconstructs voxel intensities using an iterative tomographic reconstruction algorithm (e.g. multiplicative algebraic reconstruction technique, MART) followed by cross-correlation of sub-volumes computing instantaneous 3D flow fields on a regular grid. A novel hybrid algorithm is proposed here that similar to MART iteratively reconstructs 3D-particle locations by comparing the recorded images with the projections calculated from the particle distribution in the volume. But like 3D-PTV, particles are represented by 3D-positions instead of voxel-based intensity blobs as in MART. Detailed knowledge of the optical transfer function and the particle image shape is mandatory, which may differ for different positions in the volume and for each camera. Using synthetic data it is shown that this method is capable of reconstructing densely seeded flows up to about 0.05 ppp with similar accuracy as Tomo-PIV. Finally the method is validated with experimental data.

A Monte-Carlo Benchmark of TRIPOLI-4® and MCNP on ITER neutronics

NASA Astrophysics Data System (ADS)

Blanchet, David; Pénéliau, Yannick; Eschbach, Romain; Fontaine, Bruno; Cantone, Bruno; Ferlet, Marc; Gauthier, Eric; Guillon, Christophe; Letellier, Laurent; Proust, Maxime; Mota, Fernando; Palermo, Iole; Rios, Luis; Guern, Frédéric Le; Kocan, Martin; Reichle, Roger

2017-09-01

Radiation protection and shielding studies are often based on the extensive use of 3D Monte-Carlo neutron and photon transport simulations. ITER organization hence recommends the use of MCNP-5 code (version 1.60), in association with the FENDL-2.1 neutron cross section data library, specifically dedicated to fusion applications. The MCNP reference model of the ITER tokamak, the `C-lite', is being continuously developed and improved. This article proposes to develop an alternative model, equivalent to the 'C-lite', but for the Monte-Carlo code TRIPOLI-4®. A benchmark study is defined to test this new model. Since one of the most critical areas for ITER neutronics analysis concerns the assessment of radiation levels and Shutdown Dose Rates (SDDR) behind the Equatorial Port Plugs (EPP), the benchmark is conducted to compare the neutron flux through the EPP. This problem is quite challenging with regard to the complex geometry and considering the important neutron flux attenuation ranging from 1014 down to 108 n•cm-2•s-1. Such code-to-code comparison provides independent validation of the Monte-Carlo simulations, improving the confidence in neutronic results.

Development of 3D Oxide Fuel Mechanics Models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spencer, B. W.; Casagranda, A.; Pitts, S. A.

This report documents recent work to improve the accuracy and robustness of the mechanical constitutive models used in the BISON fuel performance code. These developments include migration of the fuel mechanics models to be based on the MOOSE Tensor Mechanics module, improving the robustness of the smeared cracking model, implementing a capability to limit the time step size based on material model response, and improving the robustness of the return mapping iterations used in creep and plasticity models.

Automatic Reconstruction of Spacecraft 3D Shape from Imagery

NASA Astrophysics Data System (ADS)

Poelman, C.; Radtke, R.; Voorhees, H.

We describe a system that computes the three-dimensional (3D) shape of a spacecraft from a sequence of uncalibrated, two-dimensional images. While the mathematics of multi-view geometry is well understood, building a system that accurately recovers 3D shape from real imagery remains an art. A novel aspect of our approach is the combination of algorithms from computer vision, photogrammetry, and computer graphics. We demonstrate our system by computing spacecraft models from imagery taken by the Air Force Research Laboratory's XSS-10 satellite and DARPA's Orbital Express satellite. Using feature tie points (each identified in two or more images), we compute the relative motion of each frame and the 3D location of each feature using iterative linear factorization followed by non-linear bundle adjustment. The "point cloud" that results from this traditional shape-from-motion approach is typically too sparse to generate a detailed 3D model. Therefore, we use the computed motion solution as input to a volumetric silhouette-carving algorithm, which constructs a solid 3D model based on viewpoint consistency with the image frames. The resulting voxel model is then converted to a facet-based surface representation and is texture-mapped, yielding realistic images from arbitrary viewpoints. We also illustrate other applications of the algorithm, including 3D mensuration and stereoscopic 3D movie generation.

Adjoint tomography of crust and upper-mantle structure beneath Continental China

NASA Astrophysics Data System (ADS)

Chen, M.; Niu, F.; Liu, Q.; Tromp, J.

2013-12-01

Four years of regional earthquake recordings from 1,869 seismic stations are used for high-resolution and high-fidelity seismic imaging of the crust and upper-mantle structure beneath Continental China. This unprecedented high-density dataset is comprised of seismograms recorded by the China Earthquake Administration Array (CEArray), NorthEast China Extended SeiSmic Array (NECESSArray), INDEPTH-IV Array, F-net and other global and regional seismic networks, and involves 1,326,384 frequency-dependent phase measurements. Adjoint tomography is applied to this unprecedented dataset, aiming to resolve detailed 3D maps of compressional and shear wavespeeds, and radial anisotropy. Contrary to traditional ray-theory based tomography, adjoint tomography takes into account full 3D wave propagation effects and off-ray-path sensitivity. In our implementation, it utilizes a spectral-element method for precise wave propagation simulations. The tomographic method starts with a 3D initial model that combines smooth radially anisotropic mantle model S362ANI and 3D crustal model Crust2.0. Traveltime and amplitude misfits are minimized iteratively based on a conjugate gradient method, harnessing 3D finite-frequency kernels computed for each updated 3D model. After 17 iterations, our inversion reveals strong correlations of 3D wavespeed heterogeneities in the crust and upper mantle with surface tectonic units, such as the Himalaya Block, the Tibetan Plateau, the Tarim Basin, the Ordos Block, and the South China Block. Narrow slab features emerge from the smooth initial model above the transition zone beneath the Japan, Ryukyu, Philippine, Izu-Bonin, Mariana and Andaman arcs. 3D wavespeed variations appear comparable to or much sharper than in high-frequency P-and S-wave models from previous studies. Moreover our results include new information, such as 3D variations of radial anisotropy and the Vp/Vs ratio, which are expected to shed new light to the composition, thermal state, flow or fabric structure in the crust and upper mantle, as well as the related dynamical processes. We intend to use these seismic images to answer important tectonic questions, namely, 1) what controls the strength of the lithosphere; 2) how does lithosphere deform during the formation of orogens, basins and plateaus; 3) how pervasive is lithospheric delamination or partial removal beneath orogens and plateaus; 3) whether or not (and how) are slab segmentation and penetration into the lower mantle linked to upwellings associated with widespread magmatism in East Asia.

Study on mitigation of pulsed heat load for ITER cryogenic system

NASA Astrophysics Data System (ADS)

Peng, N.; Xiong, L. Y.; Jiang, Y. C.; Tang, J. C.; Liu, L. Q.

2015-03-01

One of the key requirements for ITER cryogenic system is the mitigation of the pulsed heat load deposited in the magnet system due to magnetic field variation and pulsed DT neutron production. As one of the control strategies, bypass valves of Toroidal Field (TF) case helium loop would be adjusted to mitigate the pulsed heat load to the LHe plant. A quasi-3D time-dependent thermal-hydraulic analysis of the TF winding packs and TF case has been performed to study the behaviors of TF magnets during the reference plasma scenario with the pulses of 400 s burn and repetition time of 1800 s. The model is based on a 1D helium flow and quasi-3D solid heat conduction model. The whole TF magnet is simulated taking into account thermal conduction between winding pack and case which are cooled separately. The heat loads are given as input information, which include AC losses in the conductor, eddy current losses in the structure, thermal radiation, thermal conduction and nuclear heating. The simulation results indicate that the temperature variation of TF magnet stays within the allowable range when the smooth control strategy is active.

Poloidal radiation asymmetries during disruption mitigation by massive gas injection on the DIII-D tokamak

NASA Astrophysics Data System (ADS)

Eidietis, N. W.

2016-10-01

Measurements of poloidal asymmetry in the radiated power during thermal quench (TQ) mitigation by massive gas injection (MGI) on DIII-D show poloidal peaking in the radiated heat flux at the wall generally consistent with 3D resistive MHD modeling, that indicates a large n=1 tearing mode causes these asymmetries. Radiation asymmetries are a concern to ITER because they can cause localized melting of the first wall even if globally the mitigation successfully radiates 100% of the plasma thermal energy. Toroidal radiation asymmetries have been well-studied, but until now the equally important poloidal asymmetries were not well constrained. Radiation emissivity profiles are reconstructed by tomographic inversion of AXUV photodiode arrays, from which the peaking measurements are derived. The poloidal peaking measurements are compared to NIMROD 3D resistive MHD simulations. Qualitatively, the measured and modeled peaking evolve similarly. In both cases, peaking during the TQ changes little with toroidal phase, consistent with predictions of n=1 MHD during the TQ producing the asymmetry. Quantitatively, the measured TQ peaking amplitudes are comparable to but consistently higher than the modeled values. This is a result of the measured radiation exhibiting high emissivity lobes at larger minor radius (and outside the separatrix) than the modeled cases, which may indicate incomplete treatment of the plasma-neutral interaction at the plasma edge in the model. This work, combined with previous measurement and modeling and toroidal radiation asymmetries, provides a basis for constraining localized mitigation radiation heat flux in ITER. Work supported by US DOE under DE-FC02-04ER54698.

The relative pose estimation of aircraft based on contour model

NASA Astrophysics Data System (ADS)

Fu, Tai; Sun, Xiangyi

2017-02-01

This paper proposes a relative pose estimation approach based on object contour model. The first step is to obtain a two-dimensional (2D) projection of three-dimensional (3D)-model-based target, which will be divided into 40 forms by clustering and LDA analysis. Then we proceed by extracting the target contour in each image and computing their Pseudo-Zernike Moments (PZM), thus a model library is constructed in an offline mode. Next, we spot a projection contour that resembles the target silhouette most in the present image from the model library with reference of PZM; then similarity transformation parameters are generated as the shape context is applied to match the silhouette sampling location, from which the identification parameters of target can be further derived. Identification parameters are converted to relative pose parameters, in the premise that these values are the initial result calculated via iterative refinement algorithm, as the relative pose parameter is in the neighborhood of actual ones. At last, Distance Image Iterative Least Squares (DI-ILS) is employed to acquire the ultimate relative pose parameters.

Tomographic iterative reconstruction of a passive scalar in a 3D turbulent flow

NASA Astrophysics Data System (ADS)

Pisso, Ignacio; Kylling, Arve; Cassiani, Massimo; Solveig Dinger, Anne; Stebel, Kerstin; Schmidbauer, Norbert; Stohl, Andreas

2017-04-01

Turbulence in stable planetary boundary layers often encountered in high latitudes influences the exchange fluxes of heat, momentum, water vapor and greenhouse gases between the Earth's surface and the atmosphere. In climate and meteorological models, such effects of turbulence need to be parameterized, ultimately based on experimental data. A novel experimental approach is being developed within the COMTESSA project in order to study turbulence statistics at high resolution. Using controlled tracer releases, high-resolution camera images and estimates of the background radiation, different tomographic algorithms can be applied in order to obtain time series of 3D representations of the scalar dispersion. In this preliminary work, using synthetic data, we investigate different reconstruction algorithms with emphasis on algebraic methods. We study the dependence of the reconstruction quality on the discretization resolution and the geometry of the experimental device in both 2 and 3-D cases. We assess the computational aspects of the iterative algorithms focusing of the phenomenon of semi-convergence applying a variety of stopping rules. We discuss different strategies for error reduction and regularization of the ill-posed problem.

Tubular Crystals and Helical Arrays: Structural Determination of HIV-1 Capsid Assemblies Using Iterative Helical Real-Space Reconstruction

PubMed Central

Zhang, Peijun; Meng, Xin; Zhao, Gongpu

2013-01-01

Helical structures are important in many different life forms and are well-suited for structural studies by cryo-EM. A unique feature of helical objects is that a single projection image contains all the views needed to perform a three-dimensional (3D) crystallographic reconstruction. Here, we use HIV-1 capsid assemblies to illustrate the detailed approaches to obtain 3D density maps from helical objects. Mature HIV-1 particles contain a conical- or tubular-shaped capsid that encloses the viral RNA genome and performs essential functions in the virus life cycle. The capsid is composed of capsid protein (CA) oligomers which are helically arranged on the surface. The N-terminal domain (NTD) of CA is connected to its C-terminal domain (CTD) through a flexible hinge. Structural analysis of two- and three-dimensional crystals provided molecular models of the capsid protein (CA) and its oligomer forms. We determined the 3D density map of helically assembled HIV-1 CA hexamers at 16 Å resolution using an iterative helical real-space reconstruction method. Docking of atomic models of CA-NTD and CA-CTD dimer into the electron density map indicated that the CTD dimer interface is retained in the assembled CA. Furthermore, molecular docking revealed an additional, novel CTD trimer interface. PMID:23132072

A fluid modeling perspective on the tokamak power scrape-off width using SOLPS-ITER

NASA Astrophysics Data System (ADS)

Meier, Eric

2016-10-01

SOLPS-ITER, a 2D fluid code, is used to conduct the first fluid modeling study of the physics behind the power scrape-off width (λq). When drift physics are activated in the code, λq is insensitive to changes in toroidal magnetic field (Bt), as predicted by the 0D heuristic drift (HD) model developed by Goldston. Using the HD model, which quantitatively agrees with regression analysis of a multi-tokamak database, λq in ITER is projected to be 1 mm instead of the previously assumed 4 mm, magnifying the challenge of maintaining the peak divertor target heat flux below the technological limit. These simulations, which use DIII-D H-mode experimental conditions as input, and reproduce the observed high-recycling, attached outer target plasma, allow insights into the scrape-off layer (SOL) physics that set λq. Independence of λq with respect to Bt suggests that SOLPS-ITER captures basic HD physics: the effect of Bt on the particle dwell time ( Bt) cancels with the effect on drift speed ( 1 /Bt), fixing the SOL plasma density width, and dictating λq. Scaling with plasma current (Ip), however, is much weaker than the roughly 1 /Ip dependence predicted by the HD model. Simulated net cross-separatrix particle flux due to magnetic drifts exceeds the anomalous particle transport, and a Pfirsch-Schluter-like SOL flow pattern is established. Up-down ion pressure asymmetry enables the net magnetic drift flux. Drifts establish in-out temperature asymmetry, and an associated thermoelectric current carries significant heat flux to the outer target. The density fall-off length in the SOL is similar to the electron temperature fall-off length, as observed experimentally. Finally, opportunities and challenges foreseen in ongoing work to extrapolate SOLPS-ITER and the HD model to ITER and future machines will be discussed. Supported by U.S. Department of Energy Contract DESC0010434.

Automatic knee cartilage delineation using inheritable segmentation

NASA Astrophysics Data System (ADS)

Dries, Sebastian P. M.; Pekar, Vladimir; Bystrov, Daniel; Heese, Harald S.; Blaffert, Thomas; Bos, Clemens; van Muiswinkel, Arianne M. C.

2008-03-01

We present a fully automatic method for segmentation of knee joint cartilage from fat suppressed MRI. The method first applies 3-D model-based segmentation technology, which allows to reliably segment the femur, patella, and tibia by iterative adaptation of the model according to image gradients. Thin plate spline interpolation is used in the next step to position deformable cartilage models for each of the three bones with reference to the segmented bone models. After initialization, the cartilage models are fine adjusted by automatic iterative adaptation to image data based on gray value gradients. The method has been validated on a collection of 8 (3 left, 5 right) fat suppressed datasets and demonstrated the sensitivity of 83+/-6% compared to manual segmentation on a per voxel basis as primary endpoint. Gross cartilage volume measurement yielded an average error of 9+/-7% as secondary endpoint. For cartilage being a thin structure, already small deviations in distance result in large errors on a per voxel basis, rendering the primary endpoint a hard criterion.

Solution Methods for 3D Tomographic Inversion Using A Highly Non-Linear Ray Tracer

NASA Astrophysics Data System (ADS)

Hipp, J. R.; Ballard, S.; Young, C. J.; Chang, M.

2008-12-01

To develop 3D velocity models to improve nuclear explosion monitoring capability, we have developed a 3D tomographic modeling system that traces rays using an implementation of the Um and Thurber ray pseudo- bending approach, with full enforcement of Snell's Law in 3D at the major discontinuities. Due to the highly non-linear nature of the ray tracer, however, we are forced to substantially damp the inversion in order to converge on a reasonable model. Unfortunately the amount of damping is not known a priori and can significantly extend the number of calls of the computationally expensive ray-tracer and the least squares matrix solver. If the damping term is too small the solution step-size produces either an un-realistic model velocity change or places the solution in or near a local minimum from which extrication is nearly impossible. If the damping term is too large, convergence can be very slow or premature convergence can occur. Standard approaches involve running inversions with a suite of damping parameters to find the best model. A better solution methodology is to take advantage of existing non-linear solution techniques such as Levenberg-Marquardt (LM) or quasi-newton iterative solvers. In particular, the LM algorithm was specifically designed to find the minimum of a multi-variate function that is expressed as the sum of squares of non-linear real-valued functions. It has become a standard technique for solving non-linear least squared problems, and is widely adopted in a broad spectrum of disciplines, including the geosciences. At each iteration, the LM approach dynamically varies the level of damping to optimize convergence. When the current estimate of the solution is far from the ultimate solution LM behaves as a steepest decent method, but transitions to Gauss- Newton behavior, with near quadratic convergence, as the estimate approaches the final solution. We show typical linear solution techniques and how they can lead to local minima if the damping is set too low. We also describe the LM technique and show how it automatically determines the appropriate damping factor as it iteratively converges on the best solution. Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energy's National Nuclear Security Administration under Contract DE-AC04- 94AL85000.

3D and 4D magnetic susceptibility tomography based on complex MR images

DOEpatents

Chen, Zikuan; Calhoun, Vince D

2014-11-11

Magnetic susceptibility is the physical property for T2*-weighted magnetic resonance imaging (T2*MRI). The invention relates to methods for reconstructing an internal distribution (3D map) of magnetic susceptibility values, .chi. (x,y,z), of an object, from 3D T2*MRI phase images, by using Computed Inverse Magnetic Resonance Imaging (CIMRI) tomography. The CIMRI technique solves the inverse problem of the 3D convolution by executing a 3D Total Variation (TV) regularized iterative convolution scheme, using a split Bregman iteration algorithm. The reconstruction of .chi. (x,y,z) can be designed for low-pass, band-pass, and high-pass features by using a convolution kernel that is modified from the standard dipole kernel. Multiple reconstructions can be implemented in parallel, and averaging the reconstructions can suppress noise. 4D dynamic magnetic susceptibility tomography can be implemented by reconstructing a 3D susceptibility volume from a 3D phase volume by performing 3D CIMRI magnetic susceptibility tomography at each snapshot time.

The high-βN hybrid scenario for ITER and FNSF steady-state missions

DOE PAGES

Turco, Francesca; Petty, Clinton C.; Luce, Timothy C.; ...

2015-05-15

New experiments on DIII-D have demonstrated the steady-state potential of the hybrid scenario, with 1 MA of plasma current driven fully non-inductively and βN up to 3.7 sustained for ~3 s (~1.5 current diffusion time, τ R, in DIII-D), providing the basis for an attractive option for steady-state operation in ITER and FNSF. Excellent confinement is achieved (H 98y2~1.6) without performance limiting tearing modes. Furthermore, the hybrid regime overcomes the need for off-axis current drive efficiency, taking advantage of poloidal magnetic flux pumping that is believed to be the result of a saturated 3/2 tearing mode. This allows for efficientmore » current drive close to the axis, without deleterious sawtooth instabilities. In these experiments, the edge surface loop voltage is driven down to zero for >1 τ R when the poloidal β is increased above 1.9 at a plasma current of 1.0 MA and the ECH power is increased to 3.2 MW. Stationary operation of hybrid plasmas with all on-axis current drive is sustained at pressures slightly above the ideal no-wall limit, while the calculated ideal with-wall MHD limit is β N~4-4.5. Off-axis NBI power has been used to broaden the pressure and current profiles in this scenario, seeking to take advantage of higher predicted kink stability limits and lower values of the tearing stability index Δ', as calculated by the DCON and PEST3 codes. Our results are based on measured profiles that predict ideal limits at βN>4.5, 10% higher than the cases with on-axis NBI. A 0-D model, based on the present confinement, βN and shape values of the DIII-D hybrid scenario, shows that these plasmas are consistent with the ITER 9 MA, Q=5 mission and the FNSF 6.7 MA scenario with Q=3.5. With collisionality and edge safety factor values comparable to those envisioned for ITER and FNSF, the high-βN hybrid represents an attractive high performance option for the steady-state missions of these devices.« less

An innovative hybrid 3D analytic-numerical model for air breathing parallel channel counter-flow PEM fuel cells.

PubMed

Tavčar, Gregor; Katrašnik, Tomaž

2014-01-01

The parallel straight channel PEM fuel cell model presented in this paper extends the innovative hybrid 3D analytic-numerical (HAN) approach previously published by the authors with capabilities to address ternary diffusion systems and counter-flow configurations. The model's core principle is modelling species transport by obtaining a 2D analytic solution for species concentration distribution in the plane perpendicular to the cannel gas-flow and coupling consecutive 2D solutions by means of a 1D numerical pipe-flow model. Electrochemical and other nonlinear phenomena are coupled to the species transport by a routine that uses derivative approximation with prediction-iteration. The latter is also the core of the counter-flow computation algorithm. A HAN model of a laboratory test fuel cell is presented and evaluated against a professional 3D CFD simulation tool showing very good agreement between results of the presented model and those of the CFD simulation. Furthermore, high accuracy results are achieved at moderate computational times, which is owed to the semi-analytic nature and to the efficient computational coupling of electrochemical kinetics and species transport.

Local motion-compensated method for high-quality 3D coronary artery reconstruction

PubMed Central

Liu, Bo; Bai, Xiangzhi; Zhou, Fugen

2016-01-01

The 3D reconstruction of coronary artery from X-ray angiograms rotationally acquired on C-arm has great clinical value. While cardiac-gated reconstruction has shown promising results, it suffers from the problem of residual motion. This work proposed a new local motion-compensated reconstruction method to handle this issue. An initial image was firstly reconstructed using a regularized iterative reconstruction method. Then a 3D/2D registration method was proposed to estimate the residual vessel motion. Finally, the residual motion was compensated in the final reconstruction using the extended iterative reconstruction method. Through quantitative evaluation, it was found that high-quality 3D reconstruction could be obtained and the result was comparable to state-of-the-art method. PMID:28018741

Modelling of minority ion cyclotron current drive during the activated phase of ITER

NASA Astrophysics Data System (ADS)

Laxåback, M.; Hellsten, T.

2005-12-01

Neoclassical tearing modes, triggered by the long-period sawteeth expected in tokamaks with large non-thermal α-particle populations, may impose a severe β limit on experiments with large fusion yields and on reactors. Sawtooth destabilization by localized current drive could relax the β limit and improve plasma performance. 3He minority ion cyclotron current drive around the sawtooth inversion radius has been planned for ITER. Several ion species, including beam injected D ions and fusion born α particles, are however also resonant in the plasma and may represent a parasitic absorption of RF power. Modelling of minority ion cyclotron current drive in an ITER-FEAT-like plasma is presented, including the effects of ion trapping, finite ion drift orbit widths, wave-induced radial transport and the coupled evolution of wave fields and resonant ion distributions. The parasitic absorption of RF power by the other resonant species is concluded to be relatively small, but the 3He minority current drive is nevertheless negligible due to the strong collisionality of the 3He ions and the drag current by toroidally counter-rotating background ions and co-rotating electrons. H minority current drive is found to be a significantly more effective alternative.

Multiview point clouds denoising based on interference elimination

NASA Astrophysics Data System (ADS)

Hu, Yang; Wu, Qian; Wang, Le; Jiang, Huanyu

2018-03-01

Newly emerging low-cost depth sensors offer huge potentials for three-dimensional (3-D) modeling, but existing high noise restricts these sensors from obtaining accurate results. Thus, we proposed a method for denoising registered multiview point clouds with high noise to solve that problem. The proposed method is aimed at fully using redundant information to eliminate the interferences among point clouds of different views based on an iterative procedure. In each iteration, noisy points are either deleted or moved to their weighted average targets in accordance with two cases. Simulated data and practical data captured by a Kinect v2 sensor were tested in experiments qualitatively and quantitatively. Results showed that the proposed method can effectively reduce noise and recover local features from highly noisy multiview point clouds with good robustness, compared to truncated signed distance function and moving least squares (MLS). Moreover, the resulting low-noise point clouds can be further smoothed by the MLS to achieve improved results. This study provides the feasibility of obtaining fine 3-D models with high-noise devices, especially for depth sensors, such as Kinect.

Simple Common Plane contact detection algorithm for FE/FD methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vorobiev, O

2006-07-19

Common-plane (CP) algorithm is widely used in Discrete Element Method (DEM) to model contact forces between interacting particles or blocks. A new simple contact detection algorithm is proposed to model contacts in FE/FD methods which is similar to the CP algorithm. The CP is defined as a plane separating interacting faces of FE/FD mesh instead of blocks or particles in the original CP method. The method does not require iterations. It is very robust and easy to implement both in 2D and 3D case.

Optimized Deconvolution for Maximum Axial Resolution in Three-Dimensional Aberration-Corrected Scanning Transmission Electron Microscopy

PubMed Central

Ramachandra, Ranjan; de Jonge, Niels

2012-01-01

Three-dimensional (3D) data sets were recorded of gold nanoparticles placed on both sides of silicon nitride membranes using focal series aberration-corrected scanning transmission electron microscopy (STEM). The deconvolution of the 3D datasets was optimized to obtain the highest possible axial resolution. The deconvolution involved two different point spread function (PSF)s, each calculated iteratively via blind deconvolution.. Supporting membranes of different thicknesses were tested to study the effect of beam broadening on the deconvolution. It was found that several iterations of deconvolution was efficient in reducing the imaging noise. With an increasing number of iterations, the axial resolution was increased, and most of the structural information was preserved. Additional iterations improved the axial resolution by maximal a factor of 4 to 6, depending on the particular dataset, and up to 8 nm maximal, but at the cost of a reduction of the lateral size of the nanoparticles in the image. Thus, the deconvolution procedure optimized for highest axial resolution is best suited for applications where one is interested in the 3D locations of nanoparticles only. PMID:22152090

Model Based Iterative Reconstruction for Bright Field Electron Tomography (Postprint)

DTIC Science & Technology

2013-02-01

which is based on the iterative coordinate descent (ICD), works by constructing a substitute to the original cost4 at every point, and minimizing this...using Beer’s law. Thus the projection integral corresponding to the ith measurement is given by log ( λD λi ) . There can be cases in which the dosage λD...Inputs: Measurements g, Initial reconstruction f ′, Initial dosage d′, Fraction of entries to reject R %Outputs: Reconstruction f̂ and dosage parameter d̂

ITER Baseline Scenario with ECCD Applied to Neoclassical Tearing Modes in DIII-D

NASA Astrophysics Data System (ADS)

Welander, A. G.; La Haye, R. J.; Lohr, J. M.; Humphreys, D. A.; Prater, R.; Paz-Soldan, C.; Kolemen, E.; Turco, F.; Olofsson, E.

2015-11-01

The neoclassical tearing mode (NTM) is a magnetic island that can occur on flux surfaces where the safety factor q is a rational number. Both m/n=3/2 and 2/1 NTM's degrade confinement, and the 2/1 mode often locks to the wall and disrupts the plasma. An NTM can be suppressed by depositing electron cyclotron current drive (ECCD) on the q-surface by injecting microwave beams into the plasma from gyrotrons. Recent DIII-D experiments have studied the application of ECCD/ECRH in the ITER Baseline Scenario. The power required from the gyrotrons can be significant enough to impact the fusion gain, Q in ITER. However, if gyrotron power could be minimized or turned off in ITER when not needed, this impact would be small. In fact, tearing-stable operation at low torque has been achieved previously in DIII-D without EC power. A vision for NTM control in ITER will be described together with results obtained from simulations and experiments in DIII-D under ITER like conditions. Work supported by the US DOE under DE-FC02-04ER54698, DE-AC02-09CH11466, DE-FG02-04ER54761.

Three-Dimensional Accuracy of Facial Scan for Facial Deformities in Clinics: A New Evaluation Method for Facial Scanner Accuracy.

PubMed

Zhao, Yi-Jiao; Xiong, Yu-Xue; Wang, Yong

2017-01-01

In this study, the practical accuracy (PA) of optical facial scanners for facial deformity patients in oral clinic was evaluated. Ten patients with a variety of facial deformities from oral clinical were included in the study. For each patient, a three-dimensional (3D) face model was acquired, via a high-accuracy industrial "line-laser" scanner (Faro), as the reference model and two test models were obtained, via a "stereophotography" (3dMD) and a "structured light" facial scanner (FaceScan) separately. Registration based on the iterative closest point (ICP) algorithm was executed to overlap the test models to reference models, and "3D error" as a new measurement indicator calculated by reverse engineering software (Geomagic Studio) was used to evaluate the 3D global and partial (upper, middle, and lower parts of face) PA of each facial scanner. The respective 3D accuracy of stereophotography and structured light facial scanners obtained for facial deformities was 0.58±0.11 mm and 0.57±0.07 mm. The 3D accuracy of different facial partitions was inconsistent; the middle face had the best performance. Although the PA of two facial scanners was lower than their nominal accuracy (NA), they all met the requirement for oral clinic use.

Adaptively Tuned Iterative Low Dose CT Image Denoising

PubMed Central

Hashemi, SayedMasoud; Paul, Narinder S.; Beheshti, Soosan; Cobbold, Richard S. C.

2015-01-01

Improving image quality is a critical objective in low dose computed tomography (CT) imaging and is the primary focus of CT image denoising. State-of-the-art CT denoising algorithms are mainly based on iterative minimization of an objective function, in which the performance is controlled by regularization parameters. To achieve the best results, these should be chosen carefully. However, the parameter selection is typically performed in an ad hoc manner, which can cause the algorithms to converge slowly or become trapped in a local minimum. To overcome these issues a noise confidence region evaluation (NCRE) method is used, which evaluates the denoising residuals iteratively and compares their statistics with those produced by additive noise. It then updates the parameters at the end of each iteration to achieve a better match to the noise statistics. By combining NCRE with the fundamentals of block matching and 3D filtering (BM3D) approach, a new iterative CT image denoising method is proposed. It is shown that this new denoising method improves the BM3D performance in terms of both the mean square error and a structural similarity index. Moreover, simulations and patient results show that this method preserves the clinically important details of low dose CT images together with a substantial noise reduction. PMID:26089972

Performance evaluation of an automatic MGRF-based lung segmentation approach

NASA Astrophysics Data System (ADS)

Soliman, Ahmed; Khalifa, Fahmi; Alansary, Amir; Gimel'farb, Georgy; El-Baz, Ayman

2013-10-01

The segmentation of the lung tissues in chest Computed Tomography (CT) images is an important step for developing any Computer-Aided Diagnostic (CAD) system for lung cancer and other pulmonary diseases. In this paper, we introduce a new framework for validating the accuracy of our developed Joint Markov-Gibbs based lung segmentation approach using 3D realistic synthetic phantoms. These phantoms are created using a 3D Generalized Gauss-Markov Random Field (GGMRF) model of voxel intensities with pairwise interaction to model the 3D appearance of the lung tissues. Then, the appearance of the generated 3D phantoms is simulated based on iterative minimization of an energy function that is based on the learned 3D-GGMRF image model. These 3D realistic phantoms can be used to evaluate the performance of any lung segmentation approach. The performance of our segmentation approach is evaluated using three metrics, namely, the Dice Similarity Coefficient (DSC), the modified Hausdorff distance, and the Average Volume Difference (AVD) between our segmentation and the ground truth. Our approach achieves mean values of 0.994±0.003, 8.844±2.495 mm, and 0.784±0.912 mm3, for the DSC, Hausdorff distance, and the AVD, respectively.

Integrated modeling of temperature and rotation profiles in JET ITER-like wall discharges

NASA Astrophysics Data System (ADS)

Rafiq, T.; Kritz, A. H.; Kim, Hyun-Tae; Schuster, E.; Weiland, J.

2017-10-01

Simulations of 78 JET ITER-like wall D-D discharges and 2 D-T reference discharges are carried out using the TRANSP predictive integrated modeling code. The time evolved temperature and rotation profiles are computed utilizing the Multi-Mode anomalous transport model. The discharges involve a broad range of conditions including scans over gyroradius, collisionality, and values of q95. The D-T reference discharges are selected in anticipation of the D-T experimental campaign planned at JET in 2019. The simulated temperature and rotation profiles are compared with the corresponding experimental profiles in the radial range from the magnetic axis to the ρ = 0.9 flux surface. The comparison is quantified by calculating the RMS deviations and Offsets. Overall, good agreement is found between the profiles produced in the simulations and the experimental data. It is planned that the simulations obtained using the Multi-Mode model will be compared with the simulations using the TGLF model. Research supported in part by the US, DoE, Office of Sciences.

An automated construction of error models for uncertainty quantification and model calibration

NASA Astrophysics Data System (ADS)

Josset, L.; Lunati, I.

2015-12-01

To reduce the computational cost of stochastic predictions, it is common practice to rely on approximate flow solvers (or «proxy»), which provide an inexact, but computationally inexpensive response [1,2]. Error models can be constructed to correct the proxy response: based on a learning set of realizations for which both exact and proxy simulations are performed, a transformation is sought to map proxy into exact responses. Once the error model is constructed a prediction of the exact response is obtained at the cost of a proxy simulation for any new realization. Despite its effectiveness [2,3], the methodology relies on several user-defined parameters, which impact the accuracy of the predictions. To achieve a fully automated construction, we propose a novel methodology based on an iterative scheme: we first initialize the error model with a small training set of realizations; then, at each iteration, we add a new realization both to improve the model and to evaluate its performance. More specifically, at each iteration we use the responses predicted by the updated model to identify the realizations that need to be considered to compute the quantity of interest. Another user-defined parameter is the number of dimensions of the response spaces between which the mapping is sought. To identify the space dimensions that optimally balance mapping accuracy and risk of overfitting, we follow a Leave-One-Out Cross Validation. Also, the definition of a stopping criterion is central to an automated construction. We use a stability measure based on bootstrap techniques to stop the iterative procedure when the iterative model has converged. The methodology is illustrated with two test cases in which an inverse problem has to be solved and assess the performance of the method. We show that an iterative scheme is crucial to increase the applicability of the approach. [1] Josset, L., and I. Lunati, Local and global error models for improving uncertainty quantification, Math.ematical Geosciences, 2013 [2] Josset, L., D. Ginsbourger, and I. Lunati, Functional Error Modeling for uncertainty quantification in hydrogeology, Water Resources Research, 2015 [3] Josset, L., V. Demyanov, A.H. Elsheikhb, and I. Lunati, Accelerating Monte Carlo Markov chains with proxy and error models, Computer & Geosciences, 2015 (In press)

Multidimensional radiative transfer with multilevel atoms. II. The non-linear multigrid method.

NASA Astrophysics Data System (ADS)

Fabiani Bendicho, P.; Trujillo Bueno, J.; Auer, L.

1997-08-01

A new iterative method for solving non-LTE multilevel radiative transfer (RT) problems in 1D, 2D or 3D geometries is presented. The scheme obtains the self-consistent solution of the kinetic and RT equations at the cost of only a few (<10) formal solutions of the RT equation. It combines, for the first time, non-linear multigrid iteration (Brandt, 1977, Math. Comp. 31, 333; Hackbush, 1985, Multi-Grid Methods and Applications, springer-Verlag, Berlin), an efficient multilevel RT scheme based on Gauss-Seidel iterations (cf. Trujillo Bueno & Fabiani Bendicho, 1995ApJ...455..646T), and accurate short-characteristics formal solution techniques. By combining a valid stopping criterion with a nested-grid strategy a converged solution with the desired true error is automatically guaranteed. Contrary to the current operator splitting methods the very high convergence speed of the new RT method does not deteriorate when the grid spatial resolution is increased. With this non-linear multigrid method non-LTE problems discretized on N grid points are solved in O(N) operations. The nested multigrid RT method presented here is, thus, particularly attractive in complicated multilevel transfer problems where small grid-sizes are required. The properties of the method are analyzed both analytically and with illustrative multilevel calculations for Ca II in 1D and 2D schematic model atmospheres.

Distorted Born iterative T-matrix method for inversion of CSEM data in anisotropic media

NASA Astrophysics Data System (ADS)

Jakobsen, Morten; Tveit, Svenn

2018-05-01

We present a direct iterative solutions to the nonlinear controlled-source electromagnetic (CSEM) inversion problem in the frequency domain, which is based on a volume integral equation formulation of the forward modelling problem in anisotropic conductive media. Our vectorial nonlinear inverse scattering approach effectively replaces an ill-posed nonlinear inverse problem with a series of linear ill-posed inverse problems, for which there already exist efficient (regularized) solution methods. The solution update the dyadic Green's function's from the source to the scattering-volume and from the scattering-volume to the receivers, after each iteration. The T-matrix approach of multiple scattering theory is used for efficient updating of all dyadic Green's functions after each linearized inversion step. This means that we have developed a T-matrix variant of the Distorted Born Iterative (DBI) method, which is often used in the acoustic and electromagnetic (medical) imaging communities as an alternative to contrast-source inversion. The main advantage of using the T-matrix approach in this context, is that it eliminates the need to perform a full forward simulation at each iteration of the DBI method, which is known to be consistent with the Gauss-Newton method. The T-matrix allows for a natural domain decomposition, since in the sense that a large model can be decomposed into an arbitrary number of domains that can be treated independently and in parallel. The T-matrix we use for efficient model updating is also independent of the source-receiver configuration, which could be an advantage when performing fast-repeat modelling and time-lapse inversion. The T-matrix is also compatible with the use of modern renormalization methods that can potentially help us to reduce the sensitivity of the CSEM inversion results on the starting model. To illustrate the performance and potential of our T-matrix variant of the DBI method for CSEM inversion, we performed a numerical experiments based on synthetic CSEM data associated with 2D VTI and 3D orthorombic model inversions. The results of our numerical experiment suggest that the DBIT method for inversion of CSEM data in anisotropic media is both accurate and efficient.

Cube Kohonen self-organizing map (CKSOM) model with new equations in organizing unstructured data.

PubMed

Lim, Seng Poh; Haron, Habibollah

2013-09-01

Surface reconstruction by using 3-D data is used to represent the surface of an object and perform important tasks. The type of data used is important and can be described as either structured or unstructured. For unstructured data, there is no connectivity information between data points. As a result, incorrect shapes will be obtained during the imaging process. Therefore, the data should be reorganized by finding the correct topology so that the correct shape can be obtained. Previous studies have shown that the Kohonen self-organizing map (KSOM) could be used to solve data organizing problems. However, 2-D Kohonen maps are limited because they are unable to cover the whole surface of closed 3-D surface data. Furthermore, the neurons inside the 3-D KSOM structure should be removed in order to create a correct wireframe model. This is because only the outside neurons are used to represent the surface of an object. The aim of this paper is to use KSOM to organize unstructured data for closed surfaces. KSOM isused in this paper by testing its ability to organize medical image data because KSOM is mostly used in constructing engineering field data. Enhancements are added to the model by introducing class number and the index vector, and new equations are created. Various grid sizes and maximum iterations are tested in the experiments. Based on the results, the number of redundancies is found to be directly proportional to the grid size. When we increase the maximum iterations, the surface of the image becomes smoother. An area formula is used and manual calculations are performed to validate the results. This model is implemented and images are created using Dev C++ and GNUPlot.

3-D inversion of airborne electromagnetic data parallelized and accelerated by local mesh and adaptive soundings

NASA Astrophysics Data System (ADS)

Yang, Dikun; Oldenburg, Douglas W.; Haber, Eldad

2014-03-01

Airborne electromagnetic (AEM) methods are highly efficient tools for assessing the Earth's conductivity structures in a large area at low cost. However, the configuration of AEM measurements, which typically have widely distributed transmitter-receiver pairs, makes the rigorous modelling and interpretation extremely time-consuming in 3-D. Excessive overcomputing can occur when working on a large mesh covering the entire survey area and inverting all soundings in the data set. We propose two improvements. The first is to use a locally optimized mesh for each AEM sounding for the forward modelling and calculation of sensitivity. This dedicated local mesh is small with fine cells near the sounding location and coarse cells far away in accordance with EM diffusion and the geometric decay of the signals. Once the forward problem is solved on the local meshes, the sensitivity for the inversion on the global mesh is available through quick interpolation. Using local meshes for AEM forward modelling avoids unnecessary computing on fine cells on a global mesh that are far away from the sounding location. Since local meshes are highly independent, the forward modelling can be efficiently parallelized over an array of processors. The second improvement is random and dynamic down-sampling of the soundings. Each inversion iteration only uses a random subset of the soundings, and the subset is reselected for every iteration. The number of soundings in the random subset, determined by an adaptive algorithm, is tied to the degree of model regularization. This minimizes the overcomputing caused by working with redundant soundings. Our methods are compared against conventional methods and tested with a synthetic example. We also invert a field data set that was previously considered to be too large to be practically inverted in 3-D. These examples show that our methodology can dramatically reduce the processing time of 3-D inversion to a practical level without losing resolution. Any existing modelling technique can be included into our framework of mesh decoupling and adaptive sampling to accelerate large-scale 3-D EM inversions.

2D and 3D registration methods for dual-energy contrast-enhanced digital breast tomosynthesis

NASA Astrophysics Data System (ADS)

Lau, Kristen C.; Roth, Susan; Maidment, Andrew D. A.

2014-03-01

Contrast-enhanced digital breast tomosynthesis (CE-DBT) uses an iodinated contrast agent to image the threedimensional breast vasculature. The University of Pennsylvania is conducting a CE-DBT clinical study in patients with known breast cancers. The breast is compressed continuously and imaged at four time points (1 pre-contrast; 3 postcontrast). A hybrid subtraction scheme is proposed. First, dual-energy (DE) images are obtained by a weighted logarithmic subtraction of the high-energy and low-energy image pairs. Then, post-contrast DE images are subtracted from the pre-contrast DE image. This hybrid temporal subtraction of DE images is performed to analyze iodine uptake, but suffers from motion artifacts. Employing image registration further helps to correct for motion, enhancing the evaluation of vascular kinetics. Registration using ANTS (Advanced Normalization Tools) is performed in an iterative manner. Mutual information optimization first corrects large-scale motions. Normalized cross-correlation optimization then iteratively corrects fine-scale misalignment. Two methods have been evaluated: a 2D method using a slice-by-slice approach, and a 3D method using a volumetric approach to account for out-of-plane breast motion. Our results demonstrate that iterative registration qualitatively improves with each iteration (five iterations total). Motion artifacts near the edge of the breast are corrected effectively and structures within the breast (e.g. blood vessels, surgical clip) are better visualized. Statistical and clinical evaluations of registration accuracy in the CE-DBT images are ongoing.

3D pose estimation and motion analysis of the articulated human hand-forearm limb in an industrial production environment

NASA Astrophysics Data System (ADS)

Hahn, Markus; Barrois, Björn; Krüger, Lars; Wöhler, Christian; Sagerer, Gerhard; Kummert, Franz

2010-09-01

This study introduces an approach to model-based 3D pose estimation and instantaneous motion analysis of the human hand-forearm limb in the application context of safe human-robot interaction. 3D pose estimation is performed using two approaches: The Multiocular Contracting Curve Density (MOCCD) algorithm is a top-down technique based on pixel statistics around a contour model projected into the images from several cameras. The Iterative Closest Point (ICP) algorithm is a bottom-up approach which uses a motion-attributed 3D point cloud to estimate the object pose. Due to their orthogonal properties, a fusion of these algorithms is shown to be favorable. The fusion is performed by a weighted combination of the extracted pose parameters in an iterative manner. The analysis of object motion is based on the pose estimation result and the motion-attributed 3D points belonging to the hand-forearm limb using an extended constraint-line approach which does not rely on any temporal filtering. A further refinement is obtained using the Shape Flow algorithm, a temporal extension of the MOCCD approach, which estimates the temporal pose derivative based on the current and the two preceding images, corresponding to temporal filtering with a short response time of two or at most three frames. Combining the results of the two motion estimation stages provides information about the instantaneous motion properties of the object. Experimental investigations are performed on real-world image sequences displaying several test persons performing different working actions typically occurring in an industrial production scenario. In all example scenes, the background is cluttered, and the test persons wear various kinds of clothes. For evaluation, independently obtained ground truth data are used. [Figure not available: see fulltext.

3D gravity inversion and uncertainty assessment of basement relief via Particle Swarm Optimization

NASA Astrophysics Data System (ADS)

Pallero, J. L. G.; Fernández-Martínez, J. L.; Bonvalot, S.; Fudym, O.

2017-04-01

Nonlinear gravity inversion in sedimentary basins is a classical problem in applied geophysics. Although a 2D approximation is widely used, 3D models have been also proposed to better take into account the basin geometry. A common nonlinear approach to this 3D problem consists in modeling the basin as a set of right rectangular prisms with prescribed density contrast, whose depths are the unknowns. Then, the problem is iteratively solved via local optimization techniques from an initial model computed using some simplifications or being estimated using prior geophysical models. Nevertheless, this kind of approach is highly dependent on the prior information that is used, and lacks from a correct solution appraisal (nonlinear uncertainty analysis). In this paper, we use the family of global Particle Swarm Optimization (PSO) optimizers for the 3D gravity inversion and model appraisal of the solution that is adopted for basement relief estimation in sedimentary basins. Synthetic and real cases are illustrated, showing that robust results are obtained. Therefore, PSO seems to be a very good alternative for 3D gravity inversion and uncertainty assessment of basement relief when used in a sampling while optimizing approach. That way important geological questions can be answered probabilistically in order to perform risk assessment in the decisions that are made.

AORSA full wave calculations of helicon waves in DIII-D and ITER

NASA Astrophysics Data System (ADS)

Lau, C.; Jaeger, E. F.; Bertelli, N.; Berry, L. A.; Green, D. L.; Murakami, M.; Park, J. M.; Pinsker, R. I.; Prater, R.

2018-06-01

Helicon waves have been recently proposed as an off-axis current drive actuator for DIII-D, FNSF, and DEMO tokamaks. Previous ray tracing modeling using GENRAY predicts strong single pass absorption and current drive in the mid-radius region on DIII-D in high beta tokamak discharges. The full wave code AORSA, which is valid to all order of Larmor radius and can resolve arbitrary ion cyclotron harmonics, has been used to validate the ray tracing technique. If the scrape-off-layer (SOL) is ignored in the modeling, AORSA agrees with GENRAY in both the amplitude and location of driven current for DIII-D and ITER cases. These models also show that helicon current drive can possibly be an efficient current drive actuator for ITER. Previous GENRAY analysis did not include the SOL. AORSA has also been used to extend the simulations to include the SOL and to estimate possible power losses of helicon waves in the SOL. AORSA calculations show that another mode can propagate in the SOL and lead to significant (~10%–20%) SOL losses at high SOL densities. Optimizing the SOL density profile can reduce these SOL losses to a few percent.

AORSA full wave calculations of helicon waves in DIII-D and ITER

DOE PAGES

Lau, Cornwall; Jaeger, E.F.; Bertelli, Nicola; ...

2018-04-11

Helicon waves have been recently proposed as an off-axis current drive actuator for DIII-D, FNSF, and DEMO tokamaks. Previous ray tracing modeling using GENRAY predicts strong single pass absorption and current drive in the mid-radius region on DIII-D in high beta tokamak discharges. The full wave code AORSA, which is valid to all order of Larmor radius and can resolve arbitrary ion cyclotron harmonics, has been used to validate the ray tracing technique. If the scrape-off-layer (SOL) is ignored in the modeling, AORSA agrees with GENRAY in both the amplitude and location of driven current for DIII-D and ITER cases.more » These models also show that helicon current drive can possibly be an efficient current drive actuator for ITER. Previous GENRAY analysis did not include the SOL. AORSA has also been used to extend the simulations to include the SOL and to estimate possible power losses of helicon waves in the SOL. AORSA calculations show that another mode can propagate in the SOL and lead to significant (~10-20%) SOL losses at high SOL densities. Optimizing the SOL density profile can reduce these SOL losses to a few percent.« less

AORSA full wave calculations of helicon waves in DIII-D and ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lau, Cornwall; Jaeger, E.F.; Bertelli, Nicola

Helicon waves have been recently proposed as an off-axis current drive actuator for DIII-D, FNSF, and DEMO tokamaks. Previous ray tracing modeling using GENRAY predicts strong single pass absorption and current drive in the mid-radius region on DIII-D in high beta tokamak discharges. The full wave code AORSA, which is valid to all order of Larmor radius and can resolve arbitrary ion cyclotron harmonics, has been used to validate the ray tracing technique. If the scrape-off-layer (SOL) is ignored in the modeling, AORSA agrees with GENRAY in both the amplitude and location of driven current for DIII-D and ITER cases.more » These models also show that helicon current drive can possibly be an efficient current drive actuator for ITER. Previous GENRAY analysis did not include the SOL. AORSA has also been used to extend the simulations to include the SOL and to estimate possible power losses of helicon waves in the SOL. AORSA calculations show that another mode can propagate in the SOL and lead to significant (~10-20%) SOL losses at high SOL densities. Optimizing the SOL density profile can reduce these SOL losses to a few percent.« less

Recovering the 3d Pose and Shape of Vehicles from Stereo Images

NASA Astrophysics Data System (ADS)

Coenen, M.; Rottensteiner, F.; Heipke, C.

2018-05-01

The precise reconstruction and pose estimation of vehicles plays an important role, e.g. for autonomous driving. We tackle this problem on the basis of street level stereo images obtained from a moving vehicle. Starting from initial vehicle detections, we use a deformable vehicle shape prior learned from CAD vehicle data to fully reconstruct the vehicles in 3D and to recover their 3D pose and shape. To fit a deformable vehicle model to each detection by inferring the optimal parameters for pose and shape, we define an energy function leveraging reconstructed 3D data, image information, the vehicle model and derived scene knowledge. To minimise the energy function, we apply a robust model fitting procedure based on iterative Monte Carlo model particle sampling. We evaluate our approach using the object detection and orientation estimation benchmark of the KITTI dataset (Geiger et al., 2012). Our approach can deal with very coarse pose initialisations and we achieve encouraging results with up to 82 % correct pose estimations. Moreover, we are able to deliver very precise orientation estimation results with an average absolute error smaller than 4°.

Overview of Recent DIII-D Experimental Results

NASA Astrophysics Data System (ADS)

Fenstermacher, Max; DIII-D Team

2017-10-01

Recent DIII-D experiments contributed to the ITER physics basis and to physics understanding for extrapolation to future devices. A predict-first analysis showed how shape can enhance access to RMP ELM suppression. 3D equilibrium changes from ELM control RMPs, were linked to density pumpout. Ion velocity imaging in the SOL showed 3D C2+flow perturbations near RMP induced n =1 islands. Correlation ECE reveals a 40% increase in Te turbulence during QH-mode and 70% during RMP ELM suppression vs. ELMing H-mode. A long-lived predator-prey oscillation replaces edge MHD in recent low-torque QH-mode plasmas. Spatio-temporally resolved runaway electron measurements validate the importance of synchrotron and collisional damping on RE dissipation. A new small angle slot divertor achieves strong plasma cooling and facilitates detachment access. Fast ion confinement was improved in high q_min scenarios using variable beam energy optimization. First reproducible, stable ITER baseline scenarios were established. Studies have validated a model for edge momentum transport that predicts the pedestal main-ion intrinsic velocity value and direction. Work supported by the US DOE under DE-FC02-04ER54698 and DE-AC52-07NA27344.

Analysis of LH Launcher Arrays (Like the ITER One) Using the TOPLHA Code

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maggiora, R.; Milanesio, D.; Vecchi, G.

2009-11-26

TOPLHA (Torino Polytechnic Lower Hybrid Antenna) code is an innovative tool for the 3D/1D simulation of Lower Hybrid (LH) antennas, i.e. accounting for realistic 3D waveguides geometry and for accurate 1D plasma models, and without restrictions on waveguide shape, including curvature. This tool provides a detailed performances prediction of any LH launcher, by computing the antenna scattering parameters, the current distribution, electric field maps and power spectra for any user-specified waveguide excitation. In addition, a fully parallelized and multi-cavity version of TOPLHA permits the analysis of large and complex waveguide arrays in a reasonable simulation time. A detailed analysis ofmore » the performances of the proposed ITER LH antenna geometry has been carried out, underlining the strong dependence of the antenna input parameters with respect to plasma conditions. A preliminary optimization of the antenna dimensions has also been accomplished. Electric current distribution on conductors, electric field distribution at the interface with plasma, and power spectra have been calculated as well. The analysis shows the strong capabilities of the TOPLHA code as a predictive tool and its usefulness to LH launcher arrays detailed design.« less

Photogrammetric 3d Building Reconstruction from Thermal Images

NASA Astrophysics Data System (ADS)

Maset, E.; Fusiello, A.; Crosilla, F.; Toldo, R.; Zorzetto, D.

2017-08-01

This paper addresses the problem of 3D building reconstruction from thermal infrared (TIR) images. We show that a commercial Computer Vision software can be used to automatically orient sequences of TIR images taken from an Unmanned Aerial Vehicle (UAV) and to generate 3D point clouds, without requiring any GNSS/INS data about position and attitude of the images nor camera calibration parameters. Moreover, we propose a procedure based on Iterative Closest Point (ICP) algorithm to create a model that combines high resolution and geometric accuracy of RGB images with the thermal information deriving from TIR images. The process can be carried out entirely by the aforesaid software in a simple and efficient way.

DIII-D research to address key challenges for ITER and fusion energy

NASA Astrophysics Data System (ADS)

Buttery, R. J.; the DIII-D Team

2015-10-01

DIII-D has made significant advances in the scientific basis for fusion energy. The physics mechanism of resonant magnetic perturbation (RMP) edge localized mode (ELM) suppression is revealed as field penetration at the pedestal top, and reduced coil set operation was demonstrated. Disruption runaway electrons were effectively quenched by shattered pellets; runaway dissipation is explained by pitch angle scattering. Modest thermal quench radiation asymmetries are well described NIMROD modelling. With good pedestal regulation and error field correction, low torque ITER baselines have been demonstrated and shown to be compatible with an ITER test blanket module simulator. However performance and long wavelength turbulence degrade as low rotation and electron heating are approached. The alternative QH mode scenario is shown to be compatible with high Greenwald density fraction, with an edge harmonic oscillation demonstrating good impurity flushing. Discharge optimization guided by the EPED model has discovered a new super H-mode with doubled pedestal height. Lithium injection also led to wider, higher pedestals. On the path to steady state, 1 MA has been sustained fully noninductively with βN = 4 and RMP ELM suppression, while a peaked current profile scenario provides attractive options for ITER and a βN = 5 future reactor. Energetic particle transport is found to exhibit a critical gradient behaviour. Scenarios are shown to be compatible with radiative and snowflake divertor techniques. Physics studies reveal that the transition to H mode is locked in by a rise in ion diamagnetic flows. Intrinsic rotation in the plasma edge is demonstrated to arise from kinetic losses. New 3D magnetic sensors validate linear ideal MHD, but identify issues in nonlinear simulations. Detachment, characterized in 2D with sub-eV resolution, reveals a radiation shortfall in simulations. Future facility development targets burning plasma physics with torque free electron heating, the path to steady state with increased off axis currents, and a new divertor solution for fusion reactors.

DIII-D research to address key challenges for ITER and fusion energy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Buttery, Richard J.

DIII-D has made significant advances in the scientific basis for fusion energy. The physics mechanism of resonant magnetic perturbation (RMP) edge localized mode (ELM) suppression is revealed as field penetration at the pedestal top, and reduced coil set operation was demonstrated. Disruption runaway electrons were effectively quenched by shattered pellets; runaway dissipation is explained by pitch angle scattering. Modest thermal quench radiation asymmetries are well described NIMROD modeling. With good pedestal regulation and error field correction, low torque ITER baselines have been demonstrated and shown to be compatible with an ITER test blanket module simulator. However performance and long wavelengthmore » turbulence degrade as low rotation and electron heating are approached. The alternative QH mode scenario is shown to be compatible with high Greenwald density fraction, with an edge harmonic oscillation demonstrating good impurity flushing. Discharge optimization guided by the EPED model has discovered a new super H-mode with doubled pedestal height. Lithium injection also led to wider, higher pedestals. On the path to steady state, 1 MA has been sustained fully non inductively with β N = 4 and RMP ELM suppression, while a peaked current profile scenario provides attractive options for ITER and a β N = 5 future reactor. Energetic particle transport is found to exhibit a critical gradient behavior. Scenarios are shown to be compatible with radiative and snowflake diverter techniques. Physics studies reveal that the transition to H mode is locked in by a rise in ion diamagnetic flows. Intrinsic rotation in the plasma edge is demonstrated to arise from kinetic losses. New 3D magnetic sensors validate linear ideal MHD, but identify issues in nonlinear simulations. Detachment, characterized in 2D with sub-eV resolution, reveals a radiation shortfall in simulations. As a result, future facility development targets burning plasma physics with torque free electron heating, the path to steady state with increased off axis currents, and a new divertor solution for fusion reactors.« less

DIII-D research to address key challenges for ITER and fusion energy

DOE PAGES

Buttery, Richard J.

2015-07-29

DIII-D has made significant advances in the scientific basis for fusion energy. The physics mechanism of resonant magnetic perturbation (RMP) edge localized mode (ELM) suppression is revealed as field penetration at the pedestal top, and reduced coil set operation was demonstrated. Disruption runaway electrons were effectively quenched by shattered pellets; runaway dissipation is explained by pitch angle scattering. Modest thermal quench radiation asymmetries are well described NIMROD modeling. With good pedestal regulation and error field correction, low torque ITER baselines have been demonstrated and shown to be compatible with an ITER test blanket module simulator. However performance and long wavelengthmore » turbulence degrade as low rotation and electron heating are approached. The alternative QH mode scenario is shown to be compatible with high Greenwald density fraction, with an edge harmonic oscillation demonstrating good impurity flushing. Discharge optimization guided by the EPED model has discovered a new super H-mode with doubled pedestal height. Lithium injection also led to wider, higher pedestals. On the path to steady state, 1 MA has been sustained fully non inductively with β N = 4 and RMP ELM suppression, while a peaked current profile scenario provides attractive options for ITER and a β N = 5 future reactor. Energetic particle transport is found to exhibit a critical gradient behavior. Scenarios are shown to be compatible with radiative and snowflake diverter techniques. Physics studies reveal that the transition to H mode is locked in by a rise in ion diamagnetic flows. Intrinsic rotation in the plasma edge is demonstrated to arise from kinetic losses. New 3D magnetic sensors validate linear ideal MHD, but identify issues in nonlinear simulations. Detachment, characterized in 2D with sub-eV resolution, reveals a radiation shortfall in simulations. As a result, future facility development targets burning plasma physics with torque free electron heating, the path to steady state with increased off axis currents, and a new divertor solution for fusion reactors.« less

Exact and approximate Fourier rebinning algorithms for the solution of the data truncation problem in 3-D PET.

PubMed

Bouallègue, Fayçal Ben; Crouzet, Jean-François; Comtat, Claude; Fourcade, Marjolaine; Mohammadi, Bijan; Mariano-Goulart, Denis

2007-07-01

This paper presents an extended 3-D exact rebinning formula in the Fourier space that leads to an iterative reprojection algorithm (iterative FOREPROJ), which enables the estimation of unmeasured oblique projection data on the basis of the whole set of measured data. In first approximation, this analytical formula also leads to an extended Fourier rebinning equation that is the basis for an approximate reprojection algorithm (extended FORE). These algorithms were evaluated on numerically simulated 3-D positron emission tomography (PET) data for the solution of the truncation problem, i.e., the estimation of the missing portions in the oblique projection data, before the application of algorithms that require complete projection data such as some rebinning methods (FOREX) or 3-D reconstruction algorithms (3DRP or direct Fourier methods). By taking advantage of all the 3-D data statistics, the iterative FOREPROJ reprojection provides a reliable alternative to the classical FOREPROJ method, which only exploits the low-statistics nonoblique data. It significantly improves the quality of the external reconstructed slices without loss of spatial resolution. As for the approximate extended FORE algorithm, it clearly exhibits limitations due to axial interpolations, but will require clinical studies with more realistic measured data in order to decide on its pertinence.

Standard and reduced radiation dose liver CT images: adaptive statistical iterative reconstruction versus model-based iterative reconstruction-comparison of findings and image quality.

PubMed

Shuman, William P; Chan, Keith T; Busey, Janet M; Mitsumori, Lee M; Choi, Eunice; Koprowicz, Kent M; Kanal, Kalpana M

2014-12-01

To investigate whether reduced radiation dose liver computed tomography (CT) images reconstructed with model-based iterative reconstruction ( MBIR model-based iterative reconstruction ) might compromise depiction of clinically relevant findings or might have decreased image quality when compared with clinical standard radiation dose CT images reconstructed with adaptive statistical iterative reconstruction ( ASIR adaptive statistical iterative reconstruction ). With institutional review board approval, informed consent, and HIPAA compliance, 50 patients (39 men, 11 women) were prospectively included who underwent liver CT. After a portal venous pass with ASIR adaptive statistical iterative reconstruction images, a 60% reduced radiation dose pass was added with MBIR model-based iterative reconstruction images. One reviewer scored ASIR adaptive statistical iterative reconstruction image quality and marked findings. Two additional independent reviewers noted whether marked findings were present on MBIR model-based iterative reconstruction images and assigned scores for relative conspicuity, spatial resolution, image noise, and image quality. Liver and aorta Hounsfield units and image noise were measured. Volume CT dose index and size-specific dose estimate ( SSDE size-specific dose estimate ) were recorded. Qualitative reviewer scores were summarized. Formal statistical inference for signal-to-noise ratio ( SNR signal-to-noise ratio ), contrast-to-noise ratio ( CNR contrast-to-noise ratio ), volume CT dose index, and SSDE size-specific dose estimate was made (paired t tests), with Bonferroni adjustment. Two independent reviewers identified all 136 ASIR adaptive statistical iterative reconstruction image findings (n = 272) on MBIR model-based iterative reconstruction images, scoring them as equal or better for conspicuity, spatial resolution, and image noise in 94.1% (256 of 272), 96.7% (263 of 272), and 99.3% (270 of 272), respectively. In 50 image sets, two reviewers (n = 100) scored overall image quality as sufficient or good with MBIR model-based iterative reconstruction in 99% (99 of 100). Liver SNR signal-to-noise ratio was significantly greater for MBIR model-based iterative reconstruction (10.8 ± 2.5 [standard deviation] vs 7.7 ± 1.4, P < .001); there was no difference for CNR contrast-to-noise ratio (2.5 ± 1.4 vs 2.4 ± 1.4, P = .45). For ASIR adaptive statistical iterative reconstruction and MBIR model-based iterative reconstruction , respectively, volume CT dose index was 15.2 mGy ± 7.6 versus 6.2 mGy ± 3.6; SSDE size-specific dose estimate was 16.4 mGy ± 6.6 versus 6.7 mGy ± 3.1 (P < .001). Liver CT images reconstructed with MBIR model-based iterative reconstruction may allow up to 59% radiation dose reduction compared with the dose with ASIR adaptive statistical iterative reconstruction , without compromising depiction of findings or image quality. © RSNA, 2014.

Thermal management of tungsten leading edges in DIII-D

DOE PAGES

Nygren, Richard E.; Rudakov, Dmitry L.; Murphy, Christopher; ...

2017-04-29

The DiMES materials probe exposed tungsten blocks with 0.3 and 1 mm high leading edges to DIII-D He plasmas in 2015 and 2016 viewed with high resolution IRTV. The 1-mm edge may have reached >2400° C in a 3-s shot with a (parallel) heat load of ~50 MW/m 2 and ~10 MW/m 2 on the surface based on modeling. The experiments support ITER. Leading edges were also a concern in the DIII-D Metal Tile Experiment in 2016. Two toroidal rings of divertor tiles had W-coated molybdenum inserts 50 mm wide radially. This study presents data and thermal analyses.

Thermal management of tungsten leading edges in DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nygren, Richard E.; Rudakov, Dmitry L.; Murphy, Christopher

The DiMES materials probe exposed tungsten blocks with 0.3 and 1 mm high leading edges to DIII-D He plasmas in 2015 and 2016 viewed with high resolution IRTV. The 1-mm edge may have reached >2400° C in a 3-s shot with a (parallel) heat load of ~50 MW/m 2 and ~10 MW/m 2 on the surface based on modeling. The experiments support ITER. Leading edges were also a concern in the DIII-D Metal Tile Experiment in 2016. Two toroidal rings of divertor tiles had W-coated molybdenum inserts 50 mm wide radially. This study presents data and thermal analyses.

Conceptual design of ACB-CP for ITER cryogenic system

NASA Astrophysics Data System (ADS)

Jiang, Yongcheng; Xiong, Lianyou; Peng, Nan; Tang, Jiancheng; Liu, Liqiang; Zhang, Liang

2012-06-01

ACB-CP (Auxiliary Cold Box for Cryopumps) is used to supply the cryopumps system with necessary cryogen in ITER (International Thermonuclear Experimental Reactor) cryogenic distribution system. The conceptual design of ACB-CP contains thermo-hydraulic analysis, 3D structure design and strength checking. Through the thermohydraulic analysis, the main specifications of process valves, pressure safety valves, pipes, heat exchangers can be decided. During the 3D structure design process, vacuum requirement, adiabatic requirement, assembly constraints and maintenance requirement have been considered to arrange the pipes, valves and other components. The strength checking has been performed to crosscheck if the 3D design meets the strength requirements for the ACB-CP.

3D molecular models of whole HIV-1 virions generated with cellPACK

PubMed Central

Goodsell, David S.; Autin, Ludovic; Forli, Stefano; Sanner, Michel F.; Olson, Arthur J.

2014-01-01

As knowledge of individual biological processes grows, it becomes increasingly useful to frame new findings within their larger biological contexts in order to generate new systems-scale hypotheses. This report highlights two major iterations of a whole virus model of HIV-1, generated with the cellPACK software. cellPACK integrates structural and systems biology data with packing algorithms to assemble comprehensive 3D models of cell-scale structures in molecular detail. This report describes the biological data, modeling parameters and cellPACK methods used to specify and construct editable models for HIV-1. Anticipating that cellPACK interfaces under development will enable researchers from diverse backgrounds to critique and improve the biological models, we discuss how cellPACK can be used as a framework to unify different types of data across all scales of biology. PMID:25253262

Depth and thermal sensor fusion to enhance 3D thermographic reconstruction.

PubMed

Cao, Yanpeng; Xu, Baobei; Ye, Zhangyu; Yang, Jiangxin; Cao, Yanlong; Tisse, Christel-Loic; Li, Xin

2018-04-02

Three-dimensional geometrical models with incorporated surface temperature data provide important information for various applications such as medical imaging, energy auditing, and intelligent robots. In this paper we present a robust method for mobile and real-time 3D thermographic reconstruction through depth and thermal sensor fusion. A multimodal imaging device consisting of a thermal camera and a RGB-D sensor is calibrated geometrically and used for data capturing. Based on the underlying principle that temperature information remains robust against illumination and viewpoint changes, we present a Thermal-guided Iterative Closest Point (T-ICP) methodology to facilitate reliable 3D thermal scanning applications. The pose of sensing device is initially estimated using correspondences found through maximizing the thermal consistency between consecutive infrared images. The coarse pose estimate is further refined by finding the motion parameters that minimize a combined geometric and thermographic loss function. Experimental results demonstrate that complimentary information captured by multimodal sensors can be utilized to improve performance of 3D thermographic reconstruction. Through effective fusion of thermal and depth data, the proposed approach generates more accurate 3D thermal models using significantly less scanning data.

Modelling of edge localised modes and edge localised mode control [Modelling of ELMs and ELM control

DOE PAGES

Huijsmans, G. T. A.; Chang, C. S.; Ferraro, N.; ...

2015-02-07

Edge Localised Modes (ELMs) in ITER Q = 10 H-mode plasmas are likely to lead to large transient heat loads to the divertor. In order to avoid an ELM induced reduction of the divertor lifetime, the large ELM energy losses need to be controlled. In ITER, ELM control is foreseen using magnetic field perturbations created by in-vessel coils and the injection of small D2 pellets. ITER plasmas are characterised by low collisionality at a high density (high fraction of the Greenwald density limit). These parameters cannot simultaneously be achieved in current experiments. Thus, the extrapolation of the ELM properties andmore » the requirements for ELM control in ITER relies on the development of validated physics models and numerical simulations. Here, we describe the modelling of ELMs and ELM control methods in ITER. The aim of this paper is not a complete review on the subject of ELM and ELM control modelling but rather to describe the current status and discuss open issues.« less

Advances in the high bootstrap fraction regime on DIII-D towards the Q = 5 mission of ITER steady state

DOE PAGES

Qian, Jinping P.; Garofalo, Andrea M.; Gong, Xianzu Z.; ...

2017-03-20

Recent EAST/DIII-D joint experiments on the high poloidal betamore » $${{\\beta}_{\\text{P}}}$$ regime in DIII-D have extended operation with internal transport barriers (ITBs) and excellent energy confinement (H 98y2 ~ 1.6) to higher plasma current, for lower q 95 ≤ 7.0, and more balanced neutral beam injection (NBI) (torque injection < 2 Nm), for lower plasma rotation than previous results. Transport analysis and experimental measurements at low toroidal rotation suggest that the E × B shear effect is not key to the ITB formation in these high $${{\\beta}_{\\text{P}}}$$ discharges. Experiments and TGLF modeling show that the Shafranov shift has a key stabilizing effect on turbulence. Extrapolation of the DIII-D results using a 0D model shows that with the improved confinement, the high bootstrap fraction regime could achieve fusion gain Q = 5 in ITER at $${{\\beta}_{\\text{N}}}$$ ~ 2.9 and q 95 ~ 7. With the optimization of q(0), the required improved confinement is achievable when using 1.5D TGLF-SAT1 for transport simulations. Furthermore, results reported in this paper suggest that the DIII-D high $${{\\beta}_{\\text{P}}}$$ scenario could be a candidate for ITER steady state operation.« less

Parallelizable 3D statistical reconstruction for C-arm tomosynthesis system

NASA Astrophysics Data System (ADS)

Wang, Beilei; Barner, Kenneth; Lee, Denny

2005-04-01

Clinical diagnosis and security detection tasks increasingly require 3D information which is difficult or impossible to obtain from 2D (two dimensional) radiographs. As a 3D (three dimensional) radiographic and non-destructive imaging technique, digital tomosynthesis is especially fit for cases where 3D information is required while a complete projection data is not available. Nowadays, FBP (filtered back projection) is extensively used in industry for its fast speed and simplicity. However, it is hard to deal with situations where only a limited number of projections from constrained directions are available, or the SNR (signal to noises ratio) of the projections is low. In order to deal with noise and take into account a priori information of the object, a statistical image reconstruction method is described based on the acquisition model of X-ray projections. We formulate a ML (maximum likelihood) function for this model and develop an ordered-subsets iterative algorithm to estimate the unknown attenuation of the object. Simulations show that satisfied results can be obtained after 1 to 2 iterations, and after that there is no significant improvement of the image quality. An adaptive wiener filter is also applied to the reconstructed image to remove its noise. Some approximations to speed up the reconstruction computation are also considered. Applying this method to computer generated projections of a revised Shepp phantom and true projections from diagnostic radiographs of a patient"s hand and mammography images yields reconstructions with impressive quality. Parallel programming is also implemented and tested. The quality of the reconstructed object is conserved, while the computation time is considerably reduced by almost the number of threads used.

Scattering and Emission from Inhomogeneous Vegetation Canopy and Alien Target by Using Three-Dimensional Vector Radiative Transfer (3D-VRT) Equation

NASA Astrophysics Data System (ADS)

Jin, Ya-Qiu; Liang, Zichang

2005-01-01

To solve 3D-VRT equation for the model of spatially inhomogeneous scatter media, the finite enclosure of the scatter media is geometrically divided, in both the vertical z and horizontal (x,y) directions, to form very thin multi-boxes. The zero-th order emission, first-order Mueller matrix of each thin box and an iterative approach of high-order radiative transfer are applied to deriving high-order scattering and emission of whole inhomogeneous scatter media. Numerical results of polarized brightness temperature at microwave frequency and under different radiometer's resolutions from inhomogeneous scatter model such as vegetation canopy and embedded alien target are simulated and discussed.

Simple Common Plane contact algorithm for explicit FE/FD methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vorobiev, O

2006-12-18

Common-plane (CP) algorithm is widely used in Discrete Element Method (DEM) to model contact forces between interacting particles or blocks. A new simple contact algorithm is proposed to model contacts in FE/FD methods which is similar to the CP algorithm. The CP is defined as a plane separating interacting faces of FE/FD mesh instead of blocks or particles used in the original CP method. The new method does not require iterations even for very stiff contacts. It is very robust and easy to implement both in 2D and 3D parallel codes.

Method for inverting reflection trace data from 3-D and 4-D seismic surveys and identifying subsurface fluid and pathways in and among hydrocarbon reservoirs based on impedance models

DOEpatents

He, W.; Anderson, R.N.

1998-08-25

A method is disclosed for inverting 3-D seismic reflection data obtained from seismic surveys to derive impedance models for a subsurface region, and for inversion of multiple 3-D seismic surveys (i.e., 4-D seismic surveys) of the same subsurface volume, separated in time to allow for dynamic fluid migration, such that small scale structure and regions of fluid and dynamic fluid flow within the subsurface volume being studied can be identified. The method allows for the mapping and quantification of available hydrocarbons within a reservoir and is thus useful for hydrocarbon prospecting and reservoir management. An iterative seismic inversion scheme constrained by actual well log data which uses a time/depth dependent seismic source function is employed to derive impedance models from 3-D and 4-D seismic datasets. The impedance values can be region grown to better isolate the low impedance hydrocarbon bearing regions. Impedance data derived from multiple 3-D seismic surveys of the same volume can be compared to identify regions of dynamic evolution and bypassed pay. Effective Oil Saturation or net oil thickness can also be derived from the impedance data and used for quantitative assessment of prospective drilling targets and reservoir management. 20 figs.

Method for inverting reflection trace data from 3-D and 4-D seismic surveys and identifying subsurface fluid and pathways in and among hydrocarbon reservoirs based on impedance models

DOEpatents

He, Wei; Anderson, Roger N.

1998-01-01

A method is disclosed for inverting 3-D seismic reflection data obtained from seismic surveys to derive impedance models for a subsurface region, and for inversion of multiple 3-D seismic surveys (i.e., 4-D seismic surveys) of the same subsurface volume, separated in time to allow for dynamic fluid migration, such that small scale structure and regions of fluid and dynamic fluid flow within the subsurface volume being studied can be identified. The method allows for the mapping and quantification of available hydrocarbons within a reservoir and is thus useful for hydrocarbon prospecting and reservoir management. An iterative seismic inversion scheme constrained by actual well log data which uses a time/depth dependent seismic source function is employed to derive impedance models from 3-D and 4-D seismic datasets. The impedance values can be region grown to better isolate the low impedance hydrocarbon bearing regions. Impedance data derived from multiple 3-D seismic surveys of the same volume can be compared to identify regions of dynamic evolution and bypassed pay. Effective Oil Saturation or net oil thickness can also be derived from the impedance data and used for quantitative assessment of prospective drilling targets and reservoir management.

A Generic 1D Forward Modeling and Inversion Algorithm for TEM Sounding with an Arbitrary Horizontal Loop

NASA Astrophysics Data System (ADS)

Li, Zhanhui; Huang, Qinghua; Xie, Xingbing; Tang, Xingong; Chang, Liao

2016-08-01

We present a generic 1D forward modeling and inversion algorithm for transient electromagnetic (TEM) data with an arbitrary horizontal transmitting loop and receivers at any depth in a layered earth. Both the Hankel and sine transforms required in the forward algorithm are calculated using the filter method. The adjoint-equation method is used to derive the formulation of data sensitivity at any depth in non-permeable media. The inversion algorithm based on this forward modeling algorithm and sensitivity formulation is developed using the Gauss-Newton iteration method combined with the Tikhonov regularization. We propose a new data-weighting method to minimize the initial model dependence that enhances the convergence stability. On a laptop with a CPU of i7-5700HQ@3.5 GHz, the inversion iteration of a 200 layered input model with a single receiver takes only 0.34 s, while it increases to only 0.53 s for the data from four receivers at a same depth. For the case of four receivers at different depths, the inversion iteration runtime increases to 1.3 s. Modeling the data with an irregular loop and an equal-area square loop indicates that the effect of the loop geometry is significant at early times and vanishes gradually along the diffusion of TEM field. For a stratified earth, inversion of data from more than one receiver is useful in noise reducing to get a more credible layered earth. However, for a resistive layer shielded below a conductive layer, increasing the number of receivers on the ground does not have significant improvement in recovering the resistive layer. Even with a down-hole TEM sounding, the shielded resistive layer cannot be recovered if all receivers are above the shielded resistive layer. However, our modeling demonstrates remarkable improvement in detecting the resistive layer with receivers in or under this layer.

Beef quality grading using machine vision

NASA Astrophysics Data System (ADS)

Jeyamkondan, S.; Ray, N.; Kranzler, Glenn A.; Biju, Nisha

2000-12-01

A video image analysis system was developed to support automation of beef quality grading. Forty images of ribeye steaks were acquired. Fat and lean meat were differentiated using a fuzzy c-means clustering algorithm. Muscle longissimus dorsi (l.d.) was segmented from the ribeye using morphological operations. At the end of each iteration of erosion and dilation, a convex hull was fitted to the image and compactness was measured. The number of iterations was selected to yield the most compact l.d. Match between the l.d. muscle traced by an expert grader and that segmented by the program was 95.9%. Marbling and color features were extracted from the l.d. muscle and were used to build regression models to predict marbling and color scores. Quality grade was predicted using another regression model incorporating all features. Grades predicted by the model were statistically equivalent to the grades assigned by expert graders.

Conversion and improvement of the Rutherford Laboratory's magnetostatic computer code GFUN3D to the NMFECC CDC 7600

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tucker, T.C.

1980-06-01

The implementation of a version of the Rutherford Laboratory's magnetostatic computer code GFUN3D on the CDC 7600 at the National Magnetic Fusion Energy Computer Center is reported. A new iteration technique that greatly increases the probability of convergence and reduces computation time by about 30% for calculations with nonlinear, ferromagnetic materials is included. The use of GFUN3D on the NMFE network is discussed, and suggestions for future work are presented. Appendix A consists of revisions to the GFUN3D User Guide (published by Rutherford Laboratory( that are necessary to use this version. Appendix B contains input and output for some samplemore » calculations. Appendix C is a detailed discussion of the old and new iteration techniques.« less

3D laser imaging for ODOT interstate network at true 1-mm resolution.

DOT National Transportation Integrated Search

2014-12-01

With the development of 3D laser imaging technology, the latest iteration of : PaveVision3D Ultra can obtain true 1mm resolution 3D data at full-lane coverage in all : three directions at highway speed up to 60MPH. This project provides rapid survey ...

Feature-based three-dimensional registration for repetitive geometry in machine vision

PubMed Central

Gong, Yuanzheng; Seibel, Eric J.

2016-01-01

As an important step in three-dimensional (3D) machine vision, 3D registration is a process of aligning two or multiple 3D point clouds that are collected from different perspectives together into a complete one. The most popular approach to register point clouds is to minimize the difference between these point clouds iteratively by Iterative Closest Point (ICP) algorithm. However, ICP does not work well for repetitive geometries. To solve this problem, a feature-based 3D registration algorithm is proposed to align the point clouds that are generated by vision-based 3D reconstruction. By utilizing texture information of the object and the robustness of image features, 3D correspondences can be retrieved so that the 3D registration of two point clouds is to solve a rigid transformation. The comparison of our method and different ICP algorithms demonstrates that our proposed algorithm is more accurate, efficient and robust for repetitive geometry registration. Moreover, this method can also be used to solve high depth uncertainty problem caused by little camera baseline in vision-based 3D reconstruction. PMID:28286703

Understanding and Modeling Vortical Flows to Improve the Technology Readiness Level for Military Aircraft (Comprehension et Modelisation des Flux de Vortex Pour Ameliorer le Niveau de Maturite Technologique au Profit des Avions Militaires)

DTIC Science & Technology

2009-10-01

636.7 115,418 0 2500 5000 7500 10000 12500 iterations -5 -4 -3 -2 -1 0 lo g( dρ /d t) SA EARSM EARSM + CC Hellsten EARSM Hellsten EARSM + CC DRSM...VORTEX BREAKDOWN RTO-TR-AVT-113 29 - 13 θU URo axial= (1) As a vortex passes through a normal shock, the tangential velocity is

The Sawtooth Oscillation Effect on Fast-Ion Energy Spectra in ITER Plasma and Neutral Particle Analyzer Measurements

NASA Astrophysics Data System (ADS)

Zaitsev, F. S.; Gorelenkov, N. N.; Petrov, M. P.; Afanasyev, V. I.; Mironov, M. I.

2018-03-01

ITER plasma with parameters close to those with the inductive scenario is considered. The distribution functions of fast ions of deuterium D and tritium T are calculated while taking into account the elastic nuclear collisions with alpha particles 4He using the code FPP-3D. The D and T energy spectra detected by the neutral-particle analyzer (NPA) are determined. The plasma mixing effect on these spectra during sawtooth oscillations is studied. It is shown that the NPA makes it possible to detect sawtooth plasma oscillations in ITER and determine the percentage composition of the D‒T mixture in it both with the presence of instabilities and without them. A conclusion is drawn on the prospects of using NPA data in automatic controllers of thermonuclear fuel isotopic composition control and plasma oscillation regulation in ITER.

3D reconstruction and spatial auralization of the "Painted Dolmen" of Antelas

NASA Astrophysics Data System (ADS)

Dias, Paulo; Campos, Guilherme; Santos, Vítor; Casaleiro, Ricardo; Seco, Ricardo; Sousa Santos, Beatriz

2008-02-01

This paper presents preliminary results on the development of a 3D audiovisual model of the Anta Pintada (painted dolmen) of Antelas, a Neolithic chamber tomb located in Oliveira de Frades and listed as Portuguese national monument. The final aim of the project is to create a highly accurate Virtual Reality (VR) model of this unique archaeological site, capable of providing not only visual but also acoustic immersion based on its actual geometry and physical properties. The project started in May 2006 with in situ data acquisition. The 3D geometry of the chamber was captured using a Laser Range Finder. In order to combine the different scans into a complete 3D visual model, reconstruction software based on the Iterative Closest Point (ICP) algorithm was developed using the Visualization Toolkit (VTK). This software computes the boundaries of the room on a 3D uniform grid and populates its interior with "free-space nodes", through an iterative algorithm operating like a torchlight illuminating a dark room. The envelope of the resulting set of "free-space nodes" is used to generate a 3D iso-surface approximating the interior shape of the chamber. Each polygon of this surface is then assigned the acoustic absorption coefficient of the corresponding boundary material. A 3D audiovisual model operating in real-time was developed for a VR Environment comprising head-mounted display (HMD) I-glasses SVGAPro, an orientation sensor (tracker) InterTrax 2 with 3 Degrees Of Freedom (3DOF) and stereo headphones. The auralisation software is based on a geometric model. This constitutes a first approach, since geometric acoustics have well-known limitations in rooms with irregular surfaces. The immediate advantage lies in their inherent computational efficiency, which allows real-time operation. The program computes the early reflections forming the initial part of the chamber's impulse response (IR), which carry the most significant cues for source localisation. These early reflections are processed through Head Related Transfer Functions (HRTF) updated in real-time according to the orientation of the user's head, so that sound waves appear to come from the correct location in space, in agreement with the visual scene. The late-reverberation tail of the IR is generated by an algorithm designed to match the reverberation time of the chamber, calculated from the actual acoustic absorption coefficients of its surfaces. The sound output to the headphones is obtained by convolving the IR with anechoic recordings of the virtual audio source.

A Unified Approach to Diffusion Direction Sensitive Slice Registration and 3-D DTI Reconstruction From Moving Fetal Brain Anatomy

PubMed Central

Fogtmann, Mads; Seshamani, Sharmishtaa; Kroenke, Christopher; Cheng, Xi; Chapman, Teresa; Wilm, Jakob; Rousseau, François

2014-01-01

This paper presents an approach to 3-D diffusion tensor image (DTI) reconstruction from multi-slice diffusion weighted (DW) magnetic resonance imaging acquisitions of the moving fetal brain. Motion scatters the slice measurements in the spatial and spherical diffusion domain with respect to the underlying anatomy. Previous image registration techniques have been described to estimate the between slice fetal head motion, allowing the reconstruction of 3-D a diffusion estimate on a regular grid using interpolation. We propose Approach to Unified Diffusion Sensitive Slice Alignment and Reconstruction (AUDiSSAR) that explicitly formulates a process for diffusion direction sensitive DW-slice-to-DTI-volume alignment. This also incorporates image resolution modeling to iteratively deconvolve the effects of the imaging point spread function using the multiple views provided by thick slices acquired in different anatomical planes. The algorithm is implemented using a multi-resolution iterative scheme and multiple real and synthetic data are used to evaluate the performance of the technique. An accuracy experiment using synthetically created motion data of an adult head and a experiment using synthetic motion added to sedated fetal monkey dataset show a significant improvement in motion-trajectory estimation compared to a state-of-the-art approaches. The performance of the method is then evaluated on challenging but clinically typical in utero fetal scans of four different human cases, showing improved rendition of cortical anatomy and extraction of white matter tracts. While the experimental work focuses on DTI reconstruction (second-order tensor model), the proposed reconstruction framework can employ any 5-D diffusion volume model that can be represented by the spatial parameterizations of an orientation distribution function. PMID:24108711

Total variation iterative constraint algorithm for limited-angle tomographic reconstruction of non-piecewise-constant structures

NASA Astrophysics Data System (ADS)

Krauze, W.; Makowski, P.; Kujawińska, M.

2015-06-01

Standard tomographic algorithms applied to optical limited-angle tomography result in the reconstructions that have highly anisotropic resolution and thus special algorithms are developed. State of the art approaches utilize the Total Variation (TV) minimization technique. These methods give very good results but are applicable to piecewise constant structures only. In this paper, we propose a novel algorithm for 3D limited-angle tomography - Total Variation Iterative Constraint method (TVIC) which enhances the applicability of the TV regularization to non-piecewise constant samples, like biological cells. This approach consists of two parts. First, the TV minimization is used as a strong regularizer to create a sharp-edged image converted to a 3D binary mask which is then iteratively applied in the tomographic reconstruction as a constraint in the object domain. In the present work we test the method on a synthetic object designed to mimic basic structures of a living cell. For simplicity, the test reconstructions were performed within the straight-line propagation model (SIRT3D solver from the ASTRA Tomography Toolbox), but the strategy is general enough to supplement any algorithm for tomographic reconstruction that supports arbitrary geometries of plane-wave projection acquisition. This includes optical diffraction tomography solvers. The obtained reconstructions present resolution uniformity and general shape accuracy expected from the TV regularization based solvers, but keeping the smooth internal structures of the object at the same time. Comparison between three different patterns of object illumination arrangement show very small impact of the projection acquisition geometry on the image quality.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harvey, R.W.; Nevins, W.M.; Smith, G.R.

Electron cyclotron (EC) power has technological and physics advantages for heating and current drive in a tokamak reactor, and advances in source development make it credible for applications in ITER. Strong single pass absorption makes heating to ignition particularly simple. The optimized EC current drive (ECCD) efficiency ({l_angle}n{r_angle}IR/P) shows a linear temperature scaling at temperatures up to {approximately} 15 keV. For temperatures above 30 keV, the efficiency saturates at approximately 0.3{center_dot}10{sup 20} A/(m{sup 2}W) for a frequency of 220 GHz in an ITER target plasma with toroidal field of 6 T, due primarily to harmonic overlap [G.R. Smith et al.,more » Phys. Fluids 30 3633 (1987)] and to a lesser extent due to limitations arising from relativistic effects [N.J. Fisch, Phys. Rev. A 24 3245 (1981)]. The same efficiency can also be obtained at 170 GHz for the same plasma equilibrium except that the magnetic field is reduced to (170/220) {times} 6 T = 4.6 T. The ECCD efficiencies are obtained with the comprehensive 3D, bounce-averaged Fokker-Planck CQL3D codes [R.W. Harvey and M.G. McCoy, Proc. IAEA TCM/Advances in Simulation and Modeling in Thermonuclear Plasmas 1992, Montreal], and BANDIT3D [M.R. O`Brien, M. Cox, C.D. Warrick, and F. S. Zaitsev, ibid.].« less

Use of 3-D magnetic resonance electrical impedance tomography in detecting human cerebral stroke: a simulation study*

PubMed Central

Gao, Nuo; Zhu, Shan-an; He, Bin

2005-01-01

We have developed a new three dimensional (3-D) conductivity imaging approach and have used it to detect human brain conductivity changes corresponding to acute cerebral stroke. The proposed Magnetic Resonance Electrical Impedance Tomography (MREIT) approach is based on the J-Substitution algorithm and is expanded to imaging 3-D subject conductivity distribution changes. Computer simulation studies have been conducted to evaluate the present MREIT imaging approach. Simulations of both types of cerebral stroke, hemorrhagic stroke and ischemic stroke, were performed on a four-sphere head model. Simulation results showed that the correlation coefficient (CC) and relative error (RE) between target and estimated conductivity distributions were 0.9245±0.0068 and 8.9997%±0.0084%, for hemorrhagic stroke, and 0.6748±0.0197 and 8.8986%±0.0089%, for ischemic stroke, when the SNR (signal-to-noise radio) of added GWN (Gaussian White Noise) was 40. The convergence characteristic was also evaluated according to the changes of CC and RE with different iteration numbers. The CC increases and RE decreases monotonously with the increasing number of iterations. The present simulation results show the feasibility of the proposed 3-D MREIT approach in hemorrhagic and ischemic stroke detection and suggest that the method may become a useful alternative in clinical diagnosis of acute cerebral stroke in humans. PMID:15822161

Is the Bifactor Model a Better Model or Is It Just Better at Modeling Implausible Responses? Application of Iteratively Reweighted Least Squares to the Rosenberg Self-Esteem Scale.

PubMed

Reise, Steven P; Kim, Dale S; Mansolf, Maxwell; Widaman, Keith F

2016-01-01

Although the structure of the Rosenberg Self-Esteem Scale (RSES) has been exhaustively evaluated, questions regarding dimensionality and direction of wording effects continue to be debated. To shed new light on these issues, we ask (a) for what percentage of individuals is a unidimensional model adequate, (b) what additional percentage of individuals can be modeled with multidimensional specifications, and (c) what percentage of individuals respond so inconsistently that they cannot be well modeled? To estimate these percentages, we applied iteratively reweighted least squares (IRLS) to examine the structure of the RSES in a large, publicly available data set. A distance measure, d s , reflecting a distance between a response pattern and an estimated model, was used for case weighting. We found that a bifactor model provided the best overall model fit, with one general factor and two wording-related group factors. However, on the basis of d r  values, a distance measure based on individual residuals, we concluded that approximately 86% of cases were adequately modeled through a unidimensional structure, and only an additional 3% required a bifactor model. Roughly 11% of cases were judged as "unmodelable" due to their significant residuals in all models considered. Finally, analysis of d s revealed that some, but not all, of the superior fit of the bifactor model is owed to that model's ability to better accommodate implausible and possibly invalid response patterns, and not necessarily because it better accounts for the effects of direction of wording.

The high-β{sub N} hybrid scenario for ITER and FNSF steady-state missions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Turco, F.; Petty, C. C.; Luce, T. C.

2015-05-15

New experiments on DIII-D have demonstrated the steady-state potential of the hybrid scenario, with 1 MA of plasma current driven fully non-inductively and β{sub N} up to 3.7 sustained for ∼3 s (∼1.5 current diffusion time, τ{sub R}, in DIII-D), providing the basis for an attractive option for steady-state operation in ITER and FNSF. Excellent confinement is achieved (H{sub 98y2} ∼ 1.6) without performance limiting tearing modes. The hybrid regime overcomes the need for off-axis current drive efficiency, taking advantage of poloidal magnetic flux pumping that is believed to be the result of a saturated 3/2 tearing mode. This allows for efficient currentmore » drive close to the axis, without deleterious sawtooth instabilities. In these experiments, the edge surface loop voltage is driven down to zero for >1 τ{sub R} when the poloidal β is increased above 1.9 at a plasma current of 1.0 MA and the ECH power is increased to 3.2 MW. Stationary operation of hybrid plasmas with all on-axis current drive is sustained at pressures slightly above the ideal no-wall limit, while the calculated ideal with-wall MHD limit is β{sub N} ∼ 4–4.5. Off-axis Neutral Beam Injection (NBI) power has been used to broaden the pressure and current profiles in this scenario, seeking to take advantage of higher predicted kink stability limits and lower values of the tearing stability index Δ′, as calculated by the DCON and PEST3 codes. Results based on measured profiles predict ideal limits at β{sub N} > 4.5, 10% higher than the cases with on-axis NBI. A 0-D model, based on the present confinement, β{sub N} and shape values of the DIII-D hybrid scenario, shows that these plasmas are consistent with the ITER 9 MA, Q = 5 mission and the FNSF 6.7 MA scenario with Q = 3.5. With collisionality and edge safety factor values comparable to those envisioned for ITER and FNSF, the high-β{sub N} hybrid represents an attractive high performance option for the steady-state missions of these devices.« less

High internal inductance for steady-state operation in ITER and a reactor

DOE PAGES

Ferron, John R.; Holcomb, Christopher T.; Luce, Timothy C.; ...

2015-06-26

Increased confinement and ideal stability limits at relatively high values of the internal inductance (more » $${{\\ell}_{i}}$$ ) have enabled an attractive scenario for steady-state tokamak operation to be demonstrated in DIII-D. Normalized plasma pressure in the range appropriate for a reactor has been achieved in high elongation and triangularity double-null divertor discharges with $${{\\beta}_{\\text{N}}}\\approx 5$$ at $${{\\ell}_{i}}\\approx 1.3$$ , near the ideal $n=1$ kink stability limit calculated without the effect of a stabilizing vacuum vessel wall, with the ideal-wall limit still higher at $${{\\beta}_{\\text{N}}}>5.5$$ . Confinement is above the H-mode level with $${{H}_{98\\left(\\text{y},2\\right)}}\\approx 1.8$$ . At $${{q}_{95}}\\approx 7.5$$ , the current is overdriven, with bootstrap current fraction $${{f}_{\\text{BS}}}\\approx 0.8$$ , noninductive current fraction $${{f}_{\\text{NI}}}>1$$ and negative surface voltage. For ITER (which has a single-null divertor shape), operation at $${{\\ell}_{i}}\\approx 1$$ is a promising option with $${{f}_{\\text{BS}}}\\approx 0.5$$ and the remaining current driven externally near the axis where the electron cyclotron current drive efficiency is high. This scenario has been tested in the ITER shape in DIII-D at $${{q}_{95}}=4.8$$ , so far reaching $${{f}_{\\text{NI}}}=0.7$$ and $${{f}_{\\text{BS}}}=0.4$$ at $${{\\beta}_{\\text{N}}}\\approx 3.5$$ with performance appropriate for the ITER Q=5 mission, $${{H}_{89}}{{\\beta}_{\\text{N}}}/q_{95}^{2}\\approx 0.3$$ . Modeling studies explored how increased current drive power for DIII-D could be applied to maintain a stationary, fully noninductive high $${{\\ell}_{i}}$$ discharge. Lastly, stable solutions in the double-null shape are found without the vacuum vessel wall at $${{\\beta}_{\\text{N}}}=4$$ , $${{\\ell}_{i}}=1.07$$ and $${{f}_{\\text{BS}}}=0.5$$ , and at $${{\\beta}_{\\text{N}}}=5$$ with the vacuum vessel wall.« less

Design & control of a 3D stroke rehabilitation platform.

PubMed

Cai, Z; Tong, D; Meadmore, K L; Freeman, C T; Hughes, A M; Rogers, E; Burridge, J H

2011-01-01

An upper limb stroke rehabilitation system is developed which combines electrical stimulation with mechanical arm support, to assist patients performing 3D reaching tasks in a virtual reality environment. The Stimulation Assistance through Iterative Learning (SAIL) platform applies electrical stimulation to two muscles in the arm using model-based control schemes which learn from previous trials of the task. This results in accurate movement which maximises the therapeutic effect of treatment. The principal components of the system are described and experimental results confirm its efficacy for clinical use in upper limb stroke rehabilitation. © 2011 IEEE

Three-dimensional drift kinetic response of high-β plasmas in the DIII-D tokamak.

PubMed

Wang, Z R; Lanctot, M J; Liu, Y Q; Park, J-K; Menard, J E

2015-04-10

A quantitative interpretation of the experimentally measured high-pressure plasma response to externally applied three-dimensional (3D) magnetic field perturbations, across the no-wall Troyon β limit, is achieved. The self-consistent inclusion of the drift kinetic effects in magnetohydrodynamic (MHD) modeling [Y. Q. Liu et al., Phys. Plasmas 15, 112503 (2008)] successfully resolves an outstanding issue of the ideal MHD model, which significantly overpredicts the plasma-induced field amplification near the no-wall limit, as compared to experiments. The model leads to quantitative agreement not only for the measured field amplitude and toroidal phase but also for the measured internal 3D displacement of the plasma. The results can be important to the prediction of the reliable plasma behavior in advanced fusion devices, such as ITER [K. Ikeda, Nucl. Fusion 47, S1 (2007)].

Integrated simulations of saturated neoclassical tearing modes in DIII-D, Joint European Torus, and ITER plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halpern, Federico D.; Bateman, Glenn; Kritz, Arnold H.

2006-06-15

A revised version of the ISLAND module [C. N. Nguyen et al., Phys. Plasmas 11, 3604 (2004)] is used in the BALDUR code [C. E. Singer et al., Comput. Phys. Commun. 49, 275 (1988)] to carry out integrated modeling simulations of DIII-D [J. Luxon, Nucl. Fusion 42, 614 (2002)], Joint European Torus (JET) [P. H. Rebut et al., Nucl. Fusion 25, 1011 (1985)], and ITER [R. Aymar et al., Plasma Phys. Control. Fusion 44, 519 (2002)] tokamak discharges in order to investigate the adverse effects of multiple saturated magnetic islands driven by neoclassical tearing modes (NTMs). Simulations are carried outmore » with a predictive model for the temperature and density pedestal at the edge of the high confinement mode (H-mode) plasma and with core transport described using the Multi-Mode model. The ISLAND module, which is used to compute magnetic island widths, includes the effects of an arbitrary aspect ratio and plasma cross sectional shape, the effect of the neoclassical bootstrap current, and the effect of the distortion in the shape of each magnetic island caused by the radial variation of the perturbed magnetic field. Radial transport is enhanced across the width of each magnetic island within the BALDUR integrated modeling simulations in order to produce a self-consistent local flattening of the plasma profiles. It is found that the main consequence of the NTM magnetic islands is a decrease in the central plasma temperature and total energy. For the DIII-D and JET discharges, it is found that inclusion of the NTMs typically results in a decrease in total energy of the order of 15%. In simulations of ITER, it is found that the saturated magnetic island widths normalized by the plasma minor radius, for the lowest order individual tearing modes, are approximately 24% for the 2/1 mode and 12% for the 3/2 mode. As a result, the ratio of ITER fusion power to heating power (fusion Q) is reduced from Q=10.6 in simulations with no NTM islands to Q=2.6 in simulations with fully saturated NTM islands.« less

Geometric Integration of Hybrid Correspondences for RGB-D Unidirectional Tracking

PubMed Central

Tang, Shengjun; Chen, Wu; Wang, Weixi; Li, Xiaoming; Li, Wenbin; Huang, Zhengdong; Hu, Han; Guo, Renzhong

2018-01-01

Traditionally, visual-based RGB-D SLAM systems only use correspondences with valid depth values for camera tracking, thus ignoring the regions without 3D information. Due to the strict limitation on measurement distance and view angle, such systems adopt only short-range constraints which may introduce larger drift errors during long-distance unidirectional tracking. In this paper, we propose a novel geometric integration method that makes use of both 2D and 3D correspondences for RGB-D tracking. Our method handles the problem by exploring visual features both when depth information is available and when it is unknown. The system comprises two parts: coarse pose tracking with 3D correspondences, and geometric integration with hybrid correspondences. First, the coarse pose tracking generates the initial camera pose using 3D correspondences with frame-by-frame registration. The initial camera poses are then used as inputs for the geometric integration model, along with 3D correspondences, 2D-3D correspondences and 2D correspondences identified from frame pairs. The initial 3D location of the correspondence is determined in two ways, from depth image and by using the initial poses to triangulate. The model improves the camera poses and decreases drift error during long-distance RGB-D tracking iteratively. Experiments were conducted using data sequences collected by commercial Structure Sensors. The results verify that the geometric integration of hybrid correspondences effectively decreases the drift error and improves mapping accuracy. Furthermore, the model enables a comparative and synergistic use of datasets, including both 2D and 3D features. PMID:29723974

Geometric Integration of Hybrid Correspondences for RGB-D Unidirectional Tracking.

PubMed

Tang, Shengjun; Chen, Wu; Wang, Weixi; Li, Xiaoming; Darwish, Walid; Li, Wenbin; Huang, Zhengdong; Hu, Han; Guo, Renzhong

2018-05-01

Traditionally, visual-based RGB-D SLAM systems only use correspondences with valid depth values for camera tracking, thus ignoring the regions without 3D information. Due to the strict limitation on measurement distance and view angle, such systems adopt only short-range constraints which may introduce larger drift errors during long-distance unidirectional tracking. In this paper, we propose a novel geometric integration method that makes use of both 2D and 3D correspondences for RGB-D tracking. Our method handles the problem by exploring visual features both when depth information is available and when it is unknown. The system comprises two parts: coarse pose tracking with 3D correspondences, and geometric integration with hybrid correspondences. First, the coarse pose tracking generates the initial camera pose using 3D correspondences with frame-by-frame registration. The initial camera poses are then used as inputs for the geometric integration model, along with 3D correspondences, 2D-3D correspondences and 2D correspondences identified from frame pairs. The initial 3D location of the correspondence is determined in two ways, from depth image and by using the initial poses to triangulate. The model improves the camera poses and decreases drift error during long-distance RGB-D tracking iteratively. Experiments were conducted using data sequences collected by commercial Structure Sensors. The results verify that the geometric integration of hybrid correspondences effectively decreases the drift error and improves mapping accuracy. Furthermore, the model enables a comparative and synergistic use of datasets, including both 2D and 3D features.

Automatic 3D segmentation of spinal cord MRI using propagated deformable models

NASA Astrophysics Data System (ADS)

De Leener, B.; Cohen-Adad, J.; Kadoury, S.

2014-03-01

Spinal cord diseases or injuries can cause dysfunction of the sensory and locomotor systems. Segmentation of the spinal cord provides measures of atrophy and allows group analysis of multi-parametric MRI via inter-subject registration to a template. All these measures were shown to improve diagnostic and surgical intervention. We developed a framework to automatically segment the spinal cord on T2-weighted MR images, based on the propagation of a deformable model. The algorithm is divided into three parts: first, an initialization step detects the spinal cord position and orientation by using the elliptical Hough transform on multiple adjacent axial slices to produce an initial tubular mesh. Second, a low-resolution deformable model is iteratively propagated along the spinal cord. To deal with highly variable contrast levels between the spinal cord and the cerebrospinal fluid, the deformation is coupled with a contrast adaptation at each iteration. Third, a refinement process and a global deformation are applied on the low-resolution mesh to provide an accurate segmentation of the spinal cord. Our method was evaluated against a semi-automatic edge-based snake method implemented in ITK-SNAP (with heavy manual adjustment) by computing the 3D Dice coefficient, mean and maximum distance errors. Accuracy and robustness were assessed from 8 healthy subjects. Each subject had two volumes: one at the cervical and one at the thoracolumbar region. Results show a precision of 0.30 +/- 0.05 mm (mean absolute distance error) in the cervical region and 0.27 +/- 0.06 mm in the thoracolumbar region. The 3D Dice coefficient was of 0.93 for both regions.

Toroidal Ampere-Faraday Equations Solved Consistently with the CQL3D Fokker-Planck Time-Evolution

NASA Astrophysics Data System (ADS)

Harvey, R. W.; Petrov, Yu. V.

2013-10-01

A self-consistent, time-dependent toroidal electric field calculation is a key feature of a complete 3D Fokker-Planck kinetic distribution radial transport code for f(v,theta,rho,t). In the present CQL3D finite-difference model, the electric field E(rho,t) is either prescribed, or iteratively adjusted to obtain prescribed toroidal or parallel currents. We discuss first results of an implementation of the Ampere-Faraday equation for the self-consistent toroidal electric field, as applied to the runaway electron production in tokamaks due to rapid reduction of the plasma temperature as occurs in a plasma disruption. Our previous results assuming a constant current density (Lenz' Law) model showed that prompt ``hot-tail runaways'' dominated ``knock-on'' and Dreicer ``drizzle'' runaways; we will examine modifications due to the more complete Ampere-Faraday solution. Work supported by US DOE under DE-FG02-ER54744.

EC assisted start-up experiments reproduction in FTU and AUG for simulations of the ITER case

DOE Office of Scientific and Technical Information (OSTI.GOV)

Granucci, G.; Ricci, D.; Farina, D.

The breakdown and plasma start-up in ITER are well known issues studied in the last few years in many tokamaks with the aid of calculation based on simplified modeling. The thickness of ITER metallic wall and the voltage limits of the Central Solenoid Power Supply strongly limit the maximum toroidal electric field achievable (0.3 V/m), well below the level used in the present generation of tokamaks. In order to have a safe and robust breakdown, the use of Electron Cyclotron Power to assist plasma formation and current rump up has been foreseen. This has raised attention on plasma formation phasemore » in presence of EC wave, especially in order to predict the required power for a robust breakdown in ITER. Few detailed theory studies have been performed up to nowadays, due to the complexity of the problems. A simplified approach, extended from that proposed in ref[1] has been developed including a impurity multispecies distribution and an EC wave propagation and absorption based on GRAY code. This integrated model (BK0D) has been benchmarked on ohmic and EC assisted experiments on FTU and AUG, finding the key aspects for a good reproduction of data. On the basis of this, the simulation has been devoted to understand the best configuration for ITER case. The dependency of impurity distribution content and neutral gas pressure limits has been considered. As results of the analysis a reasonable amount of power (1 - 2 MW) seems to be enough to extend in a significant way the breakdown and current start up capability of ITER. The work reports the FTU data reproduction and the ITER case simulations.« less

Overview of the JET results in support to ITER

NASA Astrophysics Data System (ADS)

Litaudon, X.; Abduallev, S.; Abhangi, M.; Abreu, P.; Afzal, M.; Aggarwal, K. M.; Ahlgren, T.; Ahn, J. H.; Aho-Mantila, L.; Aiba, N.; Airila, M.; Albanese, R.; Aldred, V.; Alegre, D.; Alessi, E.; Aleynikov, P.; Alfier, A.; Alkseev, A.; Allinson, M.; Alper, B.; Alves, E.; Ambrosino, G.; Ambrosino, R.; Amicucci, L.; Amosov, V.; Andersson Sundén, E.; Angelone, M.; Anghel, M.; Angioni, C.; Appel, L.; Appelbee, C.; Arena, P.; Ariola, M.; Arnichand, H.; Arshad, S.; Ash, A.; Ashikawa, N.; Aslanyan, V.; Asunta, O.; Auriemma, F.; Austin, Y.; Avotina, L.; Axton, M. D.; Ayres, C.; Bacharis, M.; Baciero, A.; Baião, D.; Bailey, S.; Baker, A.; Balboa, I.; Balden, M.; Balshaw, N.; Bament, R.; Banks, J. W.; Baranov, Y. F.; Barnard, M. A.; Barnes, D.; Barnes, M.; Barnsley, R.; Baron Wiechec, A.; Barrera Orte, L.; Baruzzo, M.; Basiuk, V.; Bassan, M.; Bastow, R.; Batista, A.; Batistoni, P.; Baughan, R.; Bauvir, B.; Baylor, L.; Bazylev, B.; Beal, J.; Beaumont, P. S.; Beckers, M.; Beckett, B.; Becoulet, A.; Bekris, N.; Beldishevski, M.; Bell, K.; Belli, F.; Bellinger, M.; Belonohy, É.; Ben Ayed, N.; Benterman, N. A.; Bergsåker, H.; Bernardo, J.; Bernert, M.; Berry, M.; Bertalot, L.; Besliu, C.; Beurskens, M.; Bieg, B.; Bielecki, J.; Biewer, T.; Bigi, M.; Bílková, P.; Binda, F.; Bisoffi, A.; Bizarro, J. P. S.; Björkas, C.; Blackburn, J.; Blackman, K.; Blackman, T. R.; Blanchard, P.; Blatchford, P.; Bobkov, V.; Boboc, A.; Bodnár, G.; Bogar, O.; Bolshakova, I.; Bolzonella, T.; Bonanomi, N.; Bonelli, F.; Boom, J.; Booth, J.; Borba, D.; Borodin, D.; Borodkina, I.; Botrugno, A.; Bottereau, C.; Boulting, P.; Bourdelle, C.; Bowden, M.; Bower, C.; Bowman, C.; Boyce, T.; Boyd, C.; Boyer, H. J.; Bradshaw, J. M. A.; Braic, V.; Bravanec, R.; Breizman, B.; Bremond, S.; Brennan, P. D.; Breton, S.; Brett, A.; Brezinsek, S.; Bright, M. D. J.; Brix, M.; Broeckx, W.; Brombin, M.; Brosławski, A.; Brown, D. P. D.; Brown, M.; Bruno, E.; Bucalossi, J.; Buch, J.; Buchanan, J.; Buckley, M. A.; Budny, R.; Bufferand, H.; Bulman, M.; Bulmer, N.; Bunting, P.; Buratti, P.; Burckhart, A.; Buscarino, A.; Busse, A.; Butler, N. K.; Bykov, I.; Byrne, J.; Cahyna, P.; Calabrò, G.; Calvo, I.; Camenen, Y.; Camp, P.; Campling, D. C.; Cane, J.; Cannas, B.; Capel, A. J.; Card, P. J.; Cardinali, A.; Carman, P.; Carr, M.; Carralero, D.; Carraro, L.; Carvalho, B. B.; Carvalho, I.; Carvalho, P.; Casson, F. J.; Castaldo, C.; Catarino, N.; Caumont, J.; Causa, F.; Cavazzana, R.; Cave-Ayland, K.; Cavinato, M.; Cecconello, M.; Ceccuzzi, S.; Cecil, E.; Cenedese, A.; Cesario, R.; Challis, C. D.; Chandler, M.; Chandra, D.; Chang, C. S.; Chankin, A.; Chapman, I. T.; Chapman, S. C.; Chernyshova, M.; Chitarin, G.; Ciraolo, G.; Ciric, D.; Citrin, J.; Clairet, F.; Clark, E.; Clark, M.; Clarkson, R.; Clatworthy, D.; Clements, C.; Cleverly, M.; Coad, J. P.; Coates, P. A.; Cobalt, A.; Coccorese, V.; Cocilovo, V.; Coda, S.; Coelho, R.; Coenen, J. W.; Coffey, I.; Colas, L.; Collins, S.; Conka, D.; Conroy, S.; Conway, N.; Coombs, D.; Cooper, D.; Cooper, S. R.; Corradino, C.; Corre, Y.; Corrigan, G.; Cortes, S.; Coster, D.; Couchman, A. S.; Cox, M. P.; Craciunescu, T.; Cramp, S.; Craven, R.; Crisanti, F.; Croci, G.; Croft, D.; Crombé, K.; Crowe, R.; Cruz, N.; Cseh, G.; Cufar, A.; Cullen, A.; Curuia, M.; Czarnecka, A.; Dabirikhah, H.; Dalgliesh, P.; Dalley, S.; Dankowski, J.; Darrow, D.; Davies, O.; Davis, W.; Day, C.; Day, I. E.; De Bock, M.; de Castro, A.; de la Cal, E.; de la Luna, E.; De Masi, G.; de Pablos, J. L.; De Temmerman, G.; De Tommasi, G.; de Vries, P.; Deakin, K.; Deane, J.; Degli Agostini, F.; Dejarnac, R.; Delabie, E.; den Harder, N.; Dendy, R. O.; Denis, J.; Denner, P.; Devaux, S.; Devynck, P.; Di Maio, F.; Di Siena, A.; Di Troia, C.; Dinca, P.; D'Inca, R.; Ding, B.; Dittmar, T.; Doerk, H.; Doerner, R. P.; Donné, T.; Dorling, S. E.; Dormido-Canto, S.; Doswon, S.; Douai, D.; Doyle, P. T.; Drenik, A.; Drewelow, P.; Drews, P.; Duckworth, Ph.; Dumont, R.; Dumortier, P.; Dunai, D.; Dunne, M.; Ďuran, I.; Durodié, F.; Dutta, P.; Duval, B. P.; Dux, R.; Dylst, K.; Dzysiuk, N.; Edappala, P. V.; Edmond, J.; Edwards, A. M.; Edwards, J.; Eich, Th.; Ekedahl, A.; El-Jorf, R.; Elsmore, C. G.; Enachescu, M.; Ericsson, G.; Eriksson, F.; Eriksson, J.; Eriksson, L. G.; Esposito, B.; Esquembri, S.; Esser, H. G.; Esteve, D.; Evans, B.; Evans, G. E.; Evison, G.; Ewart, G. D.; Fagan, D.; Faitsch, M.; Falie, D.; Fanni, A.; Fasoli, A.; Faustin, J. M.; Fawlk, N.; Fazendeiro, L.; Fedorczak, N.; Felton, R. C.; Fenton, K.; Fernades, A.; Fernandes, H.; Ferreira, J.; Fessey, J. A.; Février, O.; Ficker, O.; Field, A.; Fietz, S.; Figueiredo, A.; Figueiredo, J.; Fil, A.; Finburg, P.; Firdaouss, M.; Fischer, U.; Fittill, L.; Fitzgerald, M.; Flammini, D.; Flanagan, J.; Fleming, C.; Flinders, K.; Fonnesu, N.; Fontdecaba, J. M.; Formisano, A.; Forsythe, L.; Fortuna, L.; Fortuna-Zalesna, E.; Fortune, M.; Foster, S.; Franke, T.; Franklin, T.; Frasca, M.; Frassinetti, L.; Freisinger, M.; Fresa, R.; Frigione, D.; Fuchs, V.; Fuller, D.; Futatani, S.; Fyvie, J.; Gál, K.; Galassi, D.; Gałązka, K.; Galdon-Quiroga, J.; Gallagher, J.; Gallart, D.; Galvão, R.; Gao, X.; Gao, Y.; Garcia, J.; Garcia-Carrasco, A.; García-Muñoz, M.; Gardarein, J.-L.; Garzotti, L.; Gaudio, P.; Gauthier, E.; Gear, D. F.; Gee, S. J.; Geiger, B.; Gelfusa, M.; Gerasimov, S.; Gervasini, G.; Gethins, M.; Ghani, Z.; Ghate, M.; Gherendi, M.; Giacalone, J. C.; Giacomelli, L.; Gibson, C. S.; Giegerich, T.; Gil, C.; Gil, L.; Gilligan, S.; Gin, D.; Giovannozzi, E.; Girardo, J. B.; Giroud, C.; Giruzzi, G.; Glöggler, S.; Godwin, J.; Goff, J.; Gohil, P.; Goloborod'ko, V.; Gomes, R.; Gonçalves, B.; Goniche, M.; Goodliffe, M.; Goodyear, A.; Gorini, G.; Gosk, M.; Goulding, R.; Goussarov, A.; Gowland, R.; Graham, B.; Graham, M. E.; Graves, J. P.; Grazier, N.; Grazier, P.; Green, N. R.; Greuner, H.; Grierson, B.; Griph, F. S.; Grisolia, C.; Grist, D.; Groth, M.; Grove, R.; Grundy, C. N.; Grzonka, J.; Guard, D.; Guérard, C.; Guillemaut, C.; Guirlet, R.; Gurl, C.; Utoh, H. H.; Hackett, L. J.; Hacquin, S.; Hagar, A.; Hager, R.; Hakola, A.; Halitovs, M.; Hall, S. J.; Hallworth Cook, S. P.; Hamlyn-Harris, C.; Hammond, K.; Harrington, C.; Harrison, J.; Harting, D.; Hasenbeck, F.; Hatano, Y.; Hatch, D. R.; Haupt, T. D. V.; Hawes, J.; Hawkes, N. C.; Hawkins, J.; Hawkins, P.; Haydon, P. W.; Hayter, N.; Hazel, S.; Heesterman, P. J. L.; Heinola, K.; Hellesen, C.; Hellsten, T.; Helou, W.; Hemming, O. N.; Hender, T. C.; Henderson, M.; Henderson, S. S.; Henriques, R.; Hepple, D.; Hermon, G.; Hertout, P.; Hidalgo, C.; Highcock, E. G.; Hill, M.; Hillairet, J.; Hillesheim, J.; Hillis, D.; Hizanidis, K.; Hjalmarsson, A.; Hobirk, J.; Hodille, E.; Hogben, C. H. A.; Hogeweij, G. M. D.; Hollingsworth, A.; Hollis, S.; Homfray, D. A.; Horáček, J.; Hornung, G.; Horton, A. R.; Horton, L. D.; Horvath, L.; Hotchin, S. P.; Hough, M. R.; Howarth, P. J.; Hubbard, A.; Huber, A.; Huber, V.; Huddleston, T. M.; Hughes, M.; Huijsmans, G. T. A.; Hunter, C. L.; Huynh, P.; Hynes, A. M.; Iglesias, D.; Imazawa, N.; Imbeaux, F.; Imríšek, M.; Incelli, M.; Innocente, P.; Irishkin, M.; Ivanova-Stanik, I.; Jachmich, S.; Jacobsen, A. S.; Jacquet, P.; Jansons, J.; Jardin, A.; Järvinen, A.; Jaulmes, F.; Jednoróg, S.; Jenkins, I.; Jeong, C.; Jepu, I.; Joffrin, E.; Johnson, R.; Johnson, T.; Johnston, Jane; Joita, L.; Jones, G.; Jones, T. T. C.; Hoshino, K. K.; Kallenbach, A.; Kamiya, K.; Kaniewski, J.; Kantor, A.; Kappatou, A.; Karhunen, J.; Karkinsky, D.; Karnowska, I.; Kaufman, M.; Kaveney, G.; Kazakov, Y.; Kazantzidis, V.; Keeling, D. L.; Keenan, T.; Keep, J.; Kempenaars, M.; Kennedy, C.; Kenny, D.; Kent, J.; Kent, O. N.; Khilkevich, E.; Kim, H. T.; Kim, H. S.; Kinch, A.; king, C.; King, D.; King, R. F.; Kinna, D. J.; Kiptily, V.; Kirk, A.; Kirov, K.; Kirschner, A.; Kizane, G.; Klepper, C.; Klix, A.; Knight, P.; Knipe, S. J.; Knott, S.; Kobuchi, T.; Köchl, F.; Kocsis, G.; Kodeli, I.; Kogan, L.; Kogut, D.; Koivuranta, S.; Kominis, Y.; Köppen, M.; Kos, B.; Koskela, T.; Koslowski, H. R.; Koubiti, M.; Kovari, M.; Kowalska-Strzęciwilk, E.; Krasilnikov, A.; Krasilnikov, V.; Krawczyk, N.; Kresina, M.; Krieger, K.; Krivska, A.; Kruezi, U.; Książek, I.; Kukushkin, A.; Kundu, A.; Kurki-Suonio, T.; Kwak, S.; Kwiatkowski, R.; Kwon, O. J.; Laguardia, L.; Lahtinen, A.; Laing, A.; Lam, N.; Lambertz, H. T.; Lane, C.; Lang, P. T.; Lanthaler, S.; Lapins, J.; Lasa, A.; Last, J. R.; Łaszyńska, E.; Lawless, R.; Lawson, A.; Lawson, K. D.; Lazaros, A.; Lazzaro, E.; Leddy, J.; Lee, S.; Lefebvre, X.; Leggate, H. J.; Lehmann, J.; Lehnen, M.; Leichtle, D.; Leichuer, P.; Leipold, F.; Lengar, I.; Lennholm, M.; Lerche, E.; Lescinskis, A.; Lesnoj, S.; Letellier, E.; Leyland, M.; Leysen, W.; Li, L.; Liang, Y.; Likonen, J.; Linke, J.; Linsmeier, Ch.; Lipschultz, B.; Liu, G.; Liu, Y.; Lo Schiavo, V. P.; Loarer, T.; Loarte, A.; Lobel, R. C.; Lomanowski, B.; Lomas, P. J.; Lönnroth, J.; López, J. M.; López-Razola, J.; Lorenzini, R.; Losada, U.; Lovell, J. J.; Loving, A. B.; Lowry, C.; Luce, T.; Lucock, R. M. A.; Lukin, A.; Luna, C.; Lungaroni, M.; Lungu, C. P.; Lungu, M.; Lunniss, A.; Lupelli, I.; Lyssoivan, A.; Macdonald, N.; Macheta, P.; Maczewa, K.; Magesh, B.; Maget, P.; Maggi, C.; Maier, H.; Mailloux, J.; Makkonen, T.; Makwana, R.; Malaquias, A.; Malizia, A.; Manas, P.; Manning, A.; Manso, M. E.; Mantica, P.; Mantsinen, M.; Manzanares, A.; Maquet, Ph.; Marandet, Y.; Marcenko, N.; Marchetto, C.; Marchuk, O.; Marinelli, M.; Marinucci, M.; Markovič, T.; Marocco, D.; Marot, L.; Marren, C. A.; Marshal, R.; Martin, A.; Martin, Y.; Martín de Aguilera, A.; Martínez, F. J.; Martín-Solís, J. R.; Martynova, Y.; Maruyama, S.; Masiello, A.; Maslov, M.; Matejcik, S.; Mattei, M.; Matthews, G. F.; Maviglia, F.; Mayer, M.; Mayoral, M. L.; May-Smith, T.; Mazon, D.; Mazzotta, C.; McAdams, R.; McCarthy, P. J.; McClements, K. G.; McCormack, O.; McCullen, P. A.; McDonald, D.; McIntosh, S.; McKean, R.; McKehon, J.; Meadows, R. C.; Meakins, A.; Medina, F.; Medland, M.; Medley, S.; Meigh, S.; Meigs, A. G.; Meisl, G.; Meitner, S.; Meneses, L.; Menmuir, S.; Mergia, K.; Merrigan, I. R.; Mertens, Ph.; Meshchaninov, S.; Messiaen, A.; Meyer, H.; Mianowski, S.; Michling, R.; Middleton-Gear, D.; Miettunen, J.; Militello, F.; Militello-Asp, E.; Miloshevsky, G.; Mink, F.; Minucci, S.; Miyoshi, Y.; Mlynář, J.; Molina, D.; Monakhov, I.; Moneti, M.; Mooney, R.; Moradi, S.; Mordijck, S.; Moreira, L.; Moreno, R.; Moro, F.; Morris, A. W.; Morris, J.; Moser, L.; Mosher, S.; Moulton, D.; Murari, A.; Muraro, A.; Murphy, S.; Asakura, N. N.; Na, Y. S.; Nabais, F.; Naish, R.; Nakano, T.; Nardon, E.; Naulin, V.; Nave, M. F. F.; Nedzelski, I.; Nemtsev, G.; Nespoli, F.; Neto, A.; Neu, R.; Neverov, V. S.; Newman, M.; Nicholls, K. J.; Nicolas, T.; Nielsen, A. H.; Nielsen, P.; Nilsson, E.; Nishijima, D.; Noble, C.; Nocente, M.; Nodwell, D.; Nordlund, K.; Nordman, H.; Nouailletas, R.; Nunes, I.; Oberkofler, M.; Odupitan, T.; Ogawa, M. T.; O'Gorman, T.; Okabayashi, M.; Olney, R.; Omolayo, O.; O'Mullane, M.; Ongena, J.; Orsitto, F.; Orszagh, J.; Oswuigwe, B. I.; Otin, R.; Owen, A.; Paccagnella, R.; Pace, N.; Pacella, D.; Packer, L. W.; Page, A.; Pajuste, E.; Palazzo, S.; Pamela, S.; Panja, S.; Papp, P.; Paprok, R.; Parail, V.; Park, M.; Parra Diaz, F.; Parsons, M.; Pasqualotto, R.; Patel, A.; Pathak, S.; Paton, D.; Patten, H.; Pau, A.; Pawelec, E.; Soldan, C. Paz; Peackoc, A.; Pearson, I. J.; Pehkonen, S.-P.; Peluso, E.; Penot, C.; Pereira, A.; Pereira, R.; Pereira Puglia, P. P.; Perez von Thun, C.; Peruzzo, S.; Peschanyi, S.; Peterka, M.; Petersson, P.; Petravich, G.; Petre, A.; Petrella, N.; Petržilka, V.; Peysson, Y.; Pfefferlé, D.; Philipps, V.; Pillon, M.; Pintsuk, G.; Piovesan, P.; Pires dos Reis, A.; Piron, L.; Pironti, A.; Pisano, F.; Pitts, R.; Pizzo, F.; Plyusnin, V.; Pomaro, N.; Pompilian, O. G.; Pool, P. J.; Popovichev, S.; Porfiri, M. T.; Porosnicu, C.; Porton, M.; Possnert, G.; Potzel, S.; Powell, T.; Pozzi, J.; Prajapati, V.; Prakash, R.; Prestopino, G.; Price, D.; Price, M.; Price, R.; Prior, P.; Proudfoot, R.; Pucella, G.; Puglia, P.; Puiatti, M. E.; Pulley, D.; Purahoo, K.; Pütterich, Th.; Rachlew, E.; Rack, M.; Ragona, R.; Rainford, M. S. J.; Rakha, A.; Ramogida, G.; Ranjan, S.; Rapson, C. J.; Rasmussen, J. J.; Rathod, K.; Rattá, G.; Ratynskaia, S.; Ravera, G.; Rayner, C.; Rebai, M.; Reece, D.; Reed, A.; Réfy, D.; Regan, B.; Regaña, J.; Reich, M.; Reid, N.; Reimold, F.; Reinhart, M.; Reinke, M.; Reiser, D.; Rendell, D.; Reux, C.; Reyes Cortes, S. D. A.; Reynolds, S.; Riccardo, V.; Richardson, N.; Riddle, K.; Rigamonti, D.; Rimini, F. G.; Risner, J.; Riva, M.; Roach, C.; Robins, R. J.; Robinson, S. A.; Robinson, T.; Robson, D. W.; Roccella, R.; Rodionov, R.; Rodrigues, P.; Rodriguez, J.; Rohde, V.; Romanelli, F.; Romanelli, M.; Romanelli, S.; Romazanov, J.; Rowe, S.; Rubel, M.; Rubinacci, G.; Rubino, G.; Ruchko, L.; Ruiz, M.; Ruset, C.; Rzadkiewicz, J.; Saarelma, S.; Sabot, R.; Safi, E.; Sagar, P.; Saibene, G.; Saint-Laurent, F.; Salewski, M.; Salmi, A.; Salmon, R.; Salzedas, F.; Samaddar, D.; Samm, U.; Sandiford, D.; Santa, P.; Santala, M. I. K.; Santos, B.; Santucci, A.; Sartori, F.; Sartori, R.; Sauter, O.; Scannell, R.; Schlummer, T.; Schmid, K.; Schmidt, V.; Schmuck, S.; Schneider, M.; Schöpf, K.; Schwörer, D.; Scott, S. D.; Sergienko, G.; Sertoli, M.; Shabbir, A.; Sharapov, S. E.; Shaw, A.; Shaw, R.; Sheikh, H.; Shepherd, A.; Shevelev, A.; Shumack, A.; Sias, G.; Sibbald, M.; Sieglin, B.; Silburn, S.; Silva, A.; Silva, C.; Simmons, P. A.; Simpson, J.; Simpson-Hutchinson, J.; Sinha, A.; Sipilä, S. K.; Sips, A. C. C.; Sirén, P.; Sirinelli, A.; Sjöstrand, H.; Skiba, M.; Skilton, R.; Slabkowska, K.; Slade, B.; Smith, N.; Smith, P. G.; Smith, R.; Smith, T. J.; Smithies, M.; Snoj, L.; Soare, S.; Solano, E. R.; Somers, A.; Sommariva, C.; Sonato, P.; Sopplesa, A.; Sousa, J.; Sozzi, C.; Spagnolo, S.; Spelzini, T.; Spineanu, F.; Stables, G.; Stamatelatos, I.; Stamp, M. F.; Staniec, P.; Stankūnas, G.; Stan-Sion, C.; Stead, M. J.; Stefanikova, E.; Stepanov, I.; Stephen, A. V.; Stephen, M.; Stevens, A.; Stevens, B. D.; Strachan, J.; Strand, P.; Strauss, H. R.; Ström, P.; Stubbs, G.; Studholme, W.; Subba, F.; Summers, H. P.; Svensson, J.; Świderski, Ł.; Szabolics, T.; Szawlowski, M.; Szepesi, G.; Suzuki, T. T.; Tál, B.; Tala, T.; Talbot, A. R.; Talebzadeh, S.; Taliercio, C.; Tamain, P.; Tame, C.; Tang, W.; Tardocchi, M.; Taroni, L.; Taylor, D.; Taylor, K. A.; Tegnered, D.; Telesca, G.; Teplova, N.; Terranova, D.; Testa, D.; Tholerus, E.; Thomas, J.; Thomas, J. D.; Thomas, P.; Thompson, A.; Thompson, C.-A.; Thompson, V. K.; Thorne, L.; Thornton, A.; Thrysøe, A. S.; Tigwell, P. A.; Tipton, N.; Tiseanu, I.; Tojo, H.; Tokitani, M.; Tolias, P.; Tomeš, M.; Tonner, P.; Towndrow, M.; Trimble, P.; Tripsky, M.; Tsalas, M.; Tsavalas, P.; Tskhakaya jun, D.; Turner, I.; Turner, M. M.; Turnyanskiy, M.; Tvalashvili, G.; Tyrrell, S. G. J.; Uccello, A.; Ul-Abidin, Z.; Uljanovs, J.; Ulyatt, D.; Urano, H.; Uytdenhouwen, I.; Vadgama, A. P.; Valcarcel, D.; Valentinuzzi, M.; Valisa, M.; Vallejos Olivares, P.; Valovic, M.; Van De Mortel, M.; Van Eester, D.; Van Renterghem, W.; van Rooij, G. J.; Varje, J.; Varoutis, S.; Vartanian, S.; Vasava, K.; Vasilopoulou, T.; Vega, J.; Verdoolaege, G.; Verhoeven, R.; Verona, C.; Verona Rinati, G.; Veshchev, E.; Vianello, N.; Vicente, J.; Viezzer, E.; Villari, S.; Villone, F.; Vincenzi, P.; Vinyar, I.; Viola, B.; Vitins, A.; Vizvary, Z.; Vlad, M.; Voitsekhovitch, I.; Vondráček, P.; Vora, N.; Vu, T.; Pires de Sa, W. W.; Wakeling, B.; Waldon, C. W. F.; Walkden, N.; Walker, M.; Walker, R.; Walsh, M.; Wang, E.; Wang, N.; Warder, S.; Warren, R. J.; Waterhouse, J.; Watkins, N. W.; Watts, C.; Wauters, T.; Weckmann, A.; Weiland, J.; Weisen, H.; Weiszflog, M.; Wellstood, C.; West, A. T.; Wheatley, M. R.; Whetham, S.; Whitehead, A. M.; Whitehead, B. D.; Widdowson, A. M.; Wiesen, S.; Wilkinson, J.; Williams, J.; Williams, M.; Wilson, A. R.; Wilson, D. J.; Wilson, H. R.; Wilson, J.; Wischmeier, M.; Withenshaw, G.; Withycombe, A.; Witts, D. M.; Wood, D.; Wood, R.; Woodley, C.; Wray, S.; Wright, J.; Wright, J. C.; Wu, J.; Wukitch, S.; Wynn, A.; Xu, T.; Yadikin, D.; Yanling, W.; Yao, L.; Yavorskij, V.; Yoo, M. G.; Young, C.; Young, D.; Young, I. D.; Young, R.; Zacks, J.; Zagorski, R.; Zaitsev, F. S.; Zanino, R.; Zarins, A.; Zastrow, K. D.; Zerbini, M.; Zhang, W.; Zhou, Y.; Zilli, E.; Zoita, V.; Zoletnik, S.; Zychor, I.; JET Contributors

2017-10-01

The 2014-2016 JET results are reviewed in the light of their significance for optimising the ITER research plan for the active and non-active operation. More than 60 h of plasma operation with ITER first wall materials successfully took place since its installation in 2011. New multi-machine scaling of the type I-ELM divertor energy flux density to ITER is supported by first principle modelling. ITER relevant disruption experiments and first principle modelling are reported with a set of three disruption mitigation valves mimicking the ITER setup. Insights of the L-H power threshold in Deuterium and Hydrogen are given, stressing the importance of the magnetic configurations and the recent measurements of fine-scale structures in the edge radial electric. Dimensionless scans of the core and pedestal confinement provide new information to elucidate the importance of the first wall material on the fusion performance. H-mode plasmas at ITER triangularity (H  =  1 at β N ~ 1.8 and n/n GW ~ 0.6) have been sustained at 2 MA during 5 s. The ITER neutronics codes have been validated on high performance experiments. Prospects for the coming D-T campaign and 14 MeV neutron calibration strategy are reviewed.

Power Transmission From The ITER Model Negative Ion Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boilson, D.; Esch, H. P. L. de; Grand, C.

2007-08-10

In Cadarache development on negative ion sources is being carried out on the KAMABOKO III ion source on the MANTIS test bed. This is a model of the ion source designed for the neutral beam injectors of ITER. This ion source has been developed in collaboration with JAERI, Japan, who also designed and supplied the ion source. Its target performance is to accelerate a D- beam, with a current density of 200 A/m2 and <1 electron extracted per accelerated D- ion, at a source filling pressure of 0.3 Pa. For ITER a continuous ion beam must be assured for pulsemore » lengths of 1000 s, but beams of up to 3,600 s are also envisaged. The ion source is attached to a 3 grid 30 keV accelerator (also supplied by JAERI) and the accelerated negative ion current is determined from the energy deposited on a calorimeter. During long pulse operation ({<=}1000 s) it was found that the current density of both D- and H- beams, measured at the calorimeter was lower than expected and that a large discrepancy existed between the accelerated currents measured electrically and those transmitted to the calorimeter. The possibility that this discrepancy arose because the accelerated current included electrons (which would not be able to reach the calorimeter) was investigated and subsequently eliminated. Further studies have shown that the fraction of the electrical current reaching the calorimeter varies with the pulse length, which led to the suggestion that one or more of the accelerator grids were distorting due to the incident power during operation, leading to a progressive deterioration in the beam quality.. New extraction and acceleration grids have been designed and installed, which should have a better tolerance to thermal loads than those previously used. This paper describes the measurements of the power transmission and distribution using these grids.« less

SU-E-T-792: Validation of a Secondary TPS for IROC-H Recalculation of Anthropomorphic Phantoms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kerns, J; Howell, R; Followill, D

2015-06-15

Purpose: To validate a secondary treatment planning system (sTPS) for use by the Imaging & Radiation Oncology Core-Houston (IROC-H). The TPS will recalculate phantom irradiations submitted by institutions to IROC-H and compare plan results of the institution to the sTPS. Methods: In-field dosimetric data was collected by IROC-H for numerous linacs at 6, 10, 15, and 18 MV. The data was aggregated and used to define reference linac classes; each class was then modeled in the sTPS (Mobius3D) by matching the in-field characteristics. Fields used to collect IROC-H data were recreated and recalculated using Mobius3D. The same dosimetric points weremore » measured in the recalculation and compared to the initial collection data. Additionally, a 6MV Monte Carlo beam configuration was used to compare penumbrae in the Mobius3D models. Finally, a handful of IROC-H head and neck phantoms were recalculated using Mobius3D. Results: Recalculation and quantification of differences between reference data and Mobius3D values resulted in a relative matching score of 12.45 (0 is a perfect match) for the default 6MV Mobius3D beam configuration. By adjusting beam configuration options, iterations resulted in scores of 8.45, 6.32, and 3.52, showing that customization could have a dramatic effect on beam configuration. After in-field optimization, penumbra was compared between Monte Carlo and Mobius3D for the reference fields. For open jaw fields, FWHM field widths and penumbra widths were different by <0.6 and <1mm respectively; for MLC open fields the penumbra widths were up to 1.5mm different. Phantom recalculations showed good agreement, having an average of 0.6% error per beam. Conclusion: A secondary TPS has been validated for simple irradiation geometries using reference data collected by IROC-H. The beam was customized to the reference data iteratively and resulted in a good match. This system can provide independent recalculation of phantom plans based on independent reference data.« less

A Biomechanical Modeling Guided CBCT Estimation Technique

PubMed Central

Zhang, You; Tehrani, Joubin Nasehi; Wang, Jing

2017-01-01

Two-dimensional-to-three-dimensional (2D-3D) deformation has emerged as a new technique to estimate cone-beam computed tomography (CBCT) images. The technique is based on deforming a prior high-quality 3D CT/CBCT image to form a new CBCT image, guided by limited-view 2D projections. The accuracy of this intensity-based technique, however, is often limited in low-contrast image regions with subtle intensity differences. The solved deformation vector fields (DVFs) can also be biomechanically unrealistic. To address these problems, we have developed a biomechanical modeling guided CBCT estimation technique (Bio-CBCT-est) by combining 2D-3D deformation with finite element analysis (FEA)-based biomechanical modeling of anatomical structures. Specifically, Bio-CBCT-est first extracts the 2D-3D deformation-generated displacement vectors at the high-contrast anatomical structure boundaries. The extracted surface deformation fields are subsequently used as the boundary conditions to drive structure-based FEA to correct and fine-tune the overall deformation fields, especially those at low-contrast regions within the structure. The resulting FEA-corrected deformation fields are then fed back into 2D-3D deformation to form an iterative loop, combining the benefits of intensity-based deformation and biomechanical modeling for CBCT estimation. Using eleven lung cancer patient cases, the accuracy of the Bio-CBCT-est technique has been compared to that of the 2D-3D deformation technique and the traditional CBCT reconstruction techniques. The accuracy was evaluated in the image domain, and also in the DVF domain through clinician-tracked lung landmarks. PMID:27831866

MeProRisk - a Joint Venture for Minimizing Risk in Geothermal Reservoir Development

NASA Astrophysics Data System (ADS)

Clauser, C.; Marquart, G.

2009-12-01

Exploration and development of geothermal reservoirs for the generation of electric energy involves high engineering and economic risks due to the need for 3-D geophysical surface surveys and deep boreholes. The MeProRisk project provides a strategy guideline for reducing these risks by combining cross-disciplinary information from different specialists: Scientists from three German universities and two private companies contribute with new methods in seismic modeling and interpretation, numerical reservoir simulation, estimation of petrophysical parameters, and 3-D visualization. The approach chosen in MeProRisk consists in considering prospecting and developing of geothermal reservoirs as an iterative process. A first conceptual model for fluid flow and heat transport simulation can be developed based on limited available initial information on geology and rock properties. In the next step, additional data is incorporated which is based on (a) new seismic interpretation methods designed for delineating fracture systems, (b) statistical studies on large numbers of rock samples for estimating reliable rock parameters, (c) in situ estimates of the hydraulic conductivity tensor. This results in a continuous refinement of the reservoir model where inverse modelling of fluid flow and heat transport allows infering the uncertainty and resolution of the model at each iteration step. This finally yields a calibrated reservoir model which may be used to direct further exploration by optimizing additional borehole locations, estimate the uncertainty of key operational and economic parameters, and optimize the long-term operation of a geothermal resrvoir.

Jointly reconstructing ground motion and resistivity for ERT-based slope stability monitoring

NASA Astrophysics Data System (ADS)

Boyle, Alistair; Wilkinson, Paul B.; Chambers, Jonathan E.; Meldrum, Philip I.; Uhlemann, Sebastian; Adler, Andy

2018-02-01

Electrical resistivity tomography (ERT) is increasingly being used to investigate unstable slopes and monitor the hydrogeological processes within. But movement of electrodes or incorrect placement of electrodes with respect to an assumed model can introduce significant resistivity artefacts into the reconstruction. In this work, we demonstrate a joint resistivity and electrode movement reconstruction algorithm within an iterative Gauss-Newton framework. We apply this to ERT monitoring data from an active slow-moving landslide in the UK. Results show fewer resistivity artefacts and suggest that electrode movement and resistivity can be reconstructed at the same time under certain conditions. A new 2.5-D formulation for the electrode position Jacobian is developed and is shown to give accurate numerical solutions when compared to the adjoint method on 3-D models. On large finite element meshes, the calculation time of the newly developed approach was also proven to be orders of magnitude faster than the 3-D adjoint method and addressed modelling errors in the 2-D perturbation and adjoint electrode position Jacobian.

Advances in the steady-state hybrid regime in DIII-D—a fully non-inductive, ELM-suppressed scenario for ITER

NASA Astrophysics Data System (ADS)

Petty, C. C.; Nazikian, R.; Park, J. M.; Turco, F.; Chen, Xi; Cui, L.; Evans, T. E.; Ferraro, N. M.; Ferron, J. R.; Garofalo, A. M.; Grierson, B. A.; Holcomb, C. T.; Hyatt, A. W.; Kolemen, E.; La Haye, R. J.; Lasnier, C.; Logan, N.; Luce, T. C.; McKee, G. R.; Orlov, D.; Osborne, T. H.; Pace, D. C.; Paz-Soldan, C.; Petrie, T. W.; Snyder, P. B.; Solomon, W. M.; Taylor, N. Z.; Thome, K. E.; Van Zeeland, M. A.; Zhu, Y.

2017-11-01

The hybrid regime with beta, collisionality, safety factor and plasma shape relevant to the ITER steady-state mission has been successfully integrated with ELM suppression by applying an odd parity n  =  3 resonant magnetic perturbation (RMP). Fully non-inductive hybrids in the DIII-D tokamak with high beta (≤ft< β \\right>   ⩽  2.8%) and high confinement (H98y2  ⩽  1.4) in the ITER similar shape have achieved zero surface loop voltage for up to two current relaxation times using efficient central current drive from ECCD and NBCD. The n  =  3 RMP causes surprisingly little increase in thermal transport during ELM suppression. Poloidal magnetic flux pumping in hybrid plasmas maintains q above 1 without loss of current drive efficiency, except that experiments show that extremely peaked ECCD profiles can create sawteeth. During ECCD, Alfvén eigenmode (AE) activity is replaced by a more benign fishbone-like mode, reducing anomalous beam ion diffusion by a factor of 2. While the electron and ion thermal diffusivities substantially increase with higher ECCD power, the loss of confinement can be offset by the decreased fast ion transport resulting from AE suppression. Extrapolations from DIII-D along a dimensionless parameter scaling path as well as those using self-consistent theory-based modeling show that these ELM-suppressed, fully non-inductive hybrids can achieve the Q fus  =  5 ITER steady-state mission.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wannamaker, Philip E.

We have developed an algorithm for the inversion of magnetotelluric (MT) data to a 3D earth resistivity model based upon the finite element method. Hexahedral edge finite elements are implemented to accommodate discontinuities in the electric field across resistivity boundaries, and to accurately simulate topographic variations. All matrices are reduced and solved using direct solution modules which avoids ill-conditioning endemic to iterative solvers such as conjugate gradients, principally PARDISO for the finite element system and PLASMA for the parameter step estimate. Large model parameterizations can be handled by transforming the Gauss-Newton estimator to data-space form. Accuracy of the forward problemmore » and jacobians has been checked by comparison to integral equations results and by limiting asymptotes. Inverse accuracy and performance has been verified against the public Dublin Secret Test Model 2 and the well-known Mount St Helens 3D MT data set. This algorithm we believe is the most capable yet for forming 3D images of earth resistivity structure and their implications for geothermal fluids and pathways.« less

Divergence correction schemes in finite difference method for 3D tensor CSAMT in axial anisotropic media

NASA Astrophysics Data System (ADS)

Wang, Kunpeng; Tan, Handong; Zhang, Zhiyong; Li, Zhiqiang; Cao, Meng

2017-05-01

Resistivity anisotropy and full-tensor controlled-source audio-frequency magnetotellurics (CSAMT) have gradually become hot research topics. However, much of the current anisotropy research for tensor CSAMT only focuses on the one-dimensional (1D) solution. As the subsurface is rarely 1D, it is necessary to study three-dimensional (3D) model response. The staggered-grid finite difference method is an effective simulation method for 3D electromagnetic forward modelling. Previous studies have suggested using the divergence correction to constrain the iterative process when using a staggered-grid finite difference model so as to accelerate the 3D forward speed and enhance the computational accuracy. However, the traditional divergence correction method was developed assuming an isotropic medium. This paper improves the traditional isotropic divergence correction method and derivation process to meet the tensor CSAMT requirements for anisotropy using the volume integral of the divergence equation. This method is more intuitive, enabling a simple derivation of a discrete equation and then calculation of coefficients related to the anisotropic divergence correction equation. We validate the result of our 3D computational results by comparing them to the results computed using an anisotropic, controlled-source 2.5D program. The 3D resistivity anisotropy model allows us to evaluate the consequences of using the divergence correction at different frequencies and for two orthogonal finite length sources. Our results show that the divergence correction plays an important role in 3D tensor CSAMT resistivity anisotropy research and offers a solid foundation for inversion of CSAMT data collected over an anisotropic body.

Drifts, currents, and power scrape-off width in SOLPS-ITER modeling of DIII-D

DOE PAGES

Meier, E. T.; Goldston, R. J.; Kaveeva, E. G.; ...

2016-12-27

The effects of drifts and associated flows and currents on the width of the parallel heat flux channel (λ q) in the tokamak scrape-off layer (SOL) are analyzed using the SOLPS-ITER 2D fluid transport code. Motivation is supplied by Goldston’s heuristic drift (HD) model for λ q, which yields the same approximately inverse poloidal magnetic field dependence seen in multi-machine regression. The analysis, focusing on a DIII-D H-mode discharge, reveals HD-like features, including comparable density and temperature fall-off lengths in the SOL, and up-down ion pressure asymmetry that allows net cross-separatrix ion magnetic drift flux to exceed net anomalous ionmore » flux. In experimentally relevant high-recycling cases, scans of both toroidal and poloidal magnetic field (B tor and B pol) are conducted, showing minimal λ q dependence on either component of the field. Insensitivity to B tor is expected, and suggests that SOLPS-ITER is effectively capturing some aspects of HD physics. Absence of λ q dependence on B pol, however, is inconsistent with both the HD model and experimental results. As a result, the inconsistency is attributed to strong variation in the parallel Mach number, which violates one of the premises of the HD model.« less

Material migration studies with an ITER first wall panel proxy on EAST

NASA Astrophysics Data System (ADS)

Ding, R.; Pitts, R. A.; Borodin, D.; Carpentier, S.; Ding, F.; Gong, X. Z.; Guo, H. Y.; Kirschner, A.; Kocan, M.; Li, J. G.; Luo, G.-N.; Mao, H. M.; Qian, J. P.; Stangeby, P. C.; Wampler, W. R.; Wang, H. Q.; Wang, W. Z.

2015-02-01

The ITER beryllium (Be) first wall (FW) panels are shaped to protect leading edges between neighbouring panels arising from assembly tolerances. This departure from a perfectly cylindrical surface automatically leads to magnetically shadowed regions where eroded Be can be re-deposited, together with co-deposition of tritium fuel. To provide a benchmark for a series of erosion/re-deposition simulation studies performed for the ITER FW panels, dedicated experiments have been performed on the EAST tokamak using a specially designed, instrumented test limiter acting as a proxy for the FW panel geometry. Carbon coated molybdenum plates forming the limiter front surface were exposed to the outer midplane boundary plasma of helium discharges using the new Material and Plasma Evaluation System (MAPES). Net erosion and deposition patterns are estimated using ion beam analysis to measure the carbon layer thickness variation across the surface after exposure. The highest erosion of about 0.8 µm is found near the midplane, where the surface is closest to the plasma separatrix. No net deposition above the measurement detection limit was found on the proxy wall element, even in shadowed regions. The measured 2D surface erosion distribution has been modelled with the 3D Monte Carlo code ERO, using the local plasma parameter measurements together with a diffusive transport assumption. Excellent agreement between the experimentally observed net erosion and the modelled erosion profile has been obtained.

Scattering and emission from inhomogeneous vegetation canopy and alien target beneath by using three-dimensional vector radiative transfer (3D-VRT) equation

NASA Astrophysics Data System (ADS)

Jin, Ya-Qiu; Liang, Zichang

2005-05-01

To solve the 3D-VRT equation for the model of spatially inhomogeneous scatter media, the finite enclosure of the scatter media is geometrically divided, in both vertical z and transversal (x,y) directions, to form very thin multi-boxes. The zeroth order emission, first-order Mueller matrix of each thin box and an iterative approach of high-order radiative transfer are applied to derive high-order scattering and emission of whole inhomogeneous scatter media. Numerical results of polarized brightness temperature at microwave frequency and under different radiometer resolutions from inhomogeneous scatter model such as vegetation canopy and alien target beneath canopy are simulated and discussed.

Comparison of JET AVDE disruption data with M3D simulations and implications for ITER

DOE PAGES

Strauss, H.; Joffrin, E.; Riccardo, V.; ...

2017-10-02

Nonlinear 3D MHD asymmetric vertical displacement disruption simulations have been performed using JET equilibrium reconstruction initial data. There were several experimentally measured quantities compared with the simulation. These include vertical displacement, halo current, toroidal current asymmetry, and toroidal rotation. The experimental data and the simulations are in reasonable agreement. Also compared was the correlation of the toroidal current asymmetry and the vertical displacement asymmetry. The Noll relation between asymmetric wall force and vertical current moment is verified in the simulations. Also verified is the toroidal flux asymmetry. Though, JET is a good predictor of ITER disruption behavior, JET and ITERmore » can be in different parameter regimes, and extrapolating from JET data can overestimate the ITER wall force.« less

Comparison of JET AVDE disruption data with M3D simulations and implications for ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strauss, H.; Joffrin, E.; Riccardo, V.

Nonlinear 3D MHD asymmetric vertical displacement disruption simulations have been performed using JET equilibrium reconstruction initial data. There were several experimentally measured quantities compared with the simulation. These include vertical displacement, halo current, toroidal current asymmetry, and toroidal rotation. The experimental data and the simulations are in reasonable agreement. Also compared was the correlation of the toroidal current asymmetry and the vertical displacement asymmetry. The Noll relation between asymmetric wall force and vertical current moment is verified in the simulations. Also verified is the toroidal flux asymmetry. Though, JET is a good predictor of ITER disruption behavior, JET and ITERmore » can be in different parameter regimes, and extrapolating from JET data can overestimate the ITER wall force.« less

3-D Magnetotelluric Forward Modeling And Inversion Incorporating Topography By Using Vector Finite-Element Method Combined With Divergence Corrections Based On The Magnetic Field (VFEH++)

NASA Astrophysics Data System (ADS)

Shi, X.; Utada, H.; Jiaying, W.

2009-12-01

The vector finite-element method combined with divergence corrections based on the magnetic field H, referred to as VFEH++ method, is developed to simulate the magnetotelluric (MT) responses of 3-D conductivity models. The advantages of the new VFEH++ method are the use of edge-elements to eliminate the vector parasites and the divergence corrections to explicitly guarantee the divergence-free conditions in the whole modeling domain. 3-D MT topographic responses are modeling using the new VFEH++ method, and are compared with those calculated by other numerical methods. The results show that MT responses can be modeled highly accurate using the VFEH+ +method. The VFEH++ algorithm is also employed for the 3-D MT data inversion incorporating topography. The 3-D MT inverse problem is formulated as a minimization problem of the regularized misfit function. In order to avoid the huge memory requirement and very long time for computing the Jacobian sensitivity matrix for Gauss-Newton method, we employ the conjugate gradient (CG) approach to solve the inversion equation. In each iteration of CG algorithm, the cost computation is the product of the Jacobian sensitivity matrix with a model vector x or its transpose with a data vector y, which can be transformed into two pseudo-forwarding modeling. This avoids the full explicitly Jacobian matrix calculation and storage which leads to considerable savings in the memory required by the inversion program in PC computer. The performance of CG algorithm will be illustrated by several typical 3-D models with horizontal earth surface and topographic surfaces. The results show that the VFEH++ and CG algorithms can be effectively employed to 3-D MT field data inversion.

On 3D inelastic analysis methods for hot section components

NASA Technical Reports Server (NTRS)

Mcknight, R. L.; Chen, P. C.; Dame, L. T.; Holt, R. V.; Huang, H.; Hartle, M.; Gellin, S.; Allen, D. H.; Haisler, W. E.

1986-01-01

Accomplishments are described for the 2-year program, to develop advanced 3-D inelastic structural stress analysis methods and solution strategies for more accurate and cost effective analysis of combustors, turbine blades and vanes. The approach was to develop a matrix of formulation elements and constitutive models. Three constitutive models were developed in conjunction with optimized iterating techniques, accelerators, and convergence criteria within a framework of dynamic time incrementing. Three formulations models were developed; an eight-noded mid-surface shell element, a nine-noded mid-surface shell element and a twenty-noded isoparametric solid element. A separate computer program was developed for each combination of constitutive model-formulation model. Each program provides a functional stand alone capability for performing cyclic nonlinear structural analysis. In addition, the analysis capabilities incorporated into each program can be abstracted in subroutine form for incorporation into other codes or to form new combinations.

The 3D inelastic analysis methods for hot section components

NASA Technical Reports Server (NTRS)

Mcknight, R. L.; Maffeo, R. J.; Tipton, M. T.; Weber, G.

1992-01-01

A two-year program to develop advanced 3D inelastic structural stress analysis methods and solution strategies for more accurate and cost effective analysis of combustors, turbine blades, and vanes is described. The approach was to develop a matrix of formulation elements and constitutive models. Three constitutive models were developed in conjunction with optimized iterating techniques, accelerators, and convergence criteria within a framework of dynamic time incrementing. Three formulation models were developed: an eight-noded midsurface shell element; a nine-noded midsurface shell element; and a twenty-noded isoparametric solid element. A separate computer program has been developed for each combination of constitutive model-formulation model. Each program provides a functional stand alone capability for performing cyclic nonlinear structural analysis. In addition, the analysis capabilities incorporated into each program can be abstracted in subroutine form for incorporation into other codes or to form new combinations.

Design of the DEMO Fusion Reactor Following ITER.

PubMed

Garabedian, Paul R; McFadden, Geoffrey B

2009-01-01

Runs of the NSTAB nonlinear stability code show there are many three-dimensional (3D) solutions of the advanced tokamak problem subject to axially symmetric boundary conditions. These numerical simulations based on mathematical equations in conservation form predict that the ITER international tokamak project will encounter persistent disruptions and edge localized mode (ELMS) crashes. Test particle runs of the TRAN transport code suggest that for quasineutrality to prevail in tokamaks a certain minimum level of 3D asymmetry of the magnetic spectrum is required which is comparable to that found in quasiaxially symmetric (QAS) stellarators. The computational theory suggests that a QAS stellarator with two field periods and proportions like those of ITER is a good candidate for a fusion reactor. For a demonstration reactor (DEMO) we seek an experiment that combines the best features of ITER, with a system of QAS coils providing external rotational transform, which is a measure of the poloidal field. We have discovered a configuration with unusually good quasisymmetry that is ideal for this task.

Design of the DEMO Fusion Reactor Following ITER

PubMed Central

Garabedian, Paul R.; McFadden, Geoffrey B.

2009-01-01

Runs of the NSTAB nonlinear stability code show there are many three-dimensional (3D) solutions of the advanced tokamak problem subject to axially symmetric boundary conditions. These numerical simulations based on mathematical equations in conservation form predict that the ITER international tokamak project will encounter persistent disruptions and edge localized mode (ELMS) crashes. Test particle runs of the TRAN transport code suggest that for quasineutrality to prevail in tokamaks a certain minimum level of 3D asymmetry of the magnetic spectrum is required which is comparable to that found in quasiaxially symmetric (QAS) stellarators. The computational theory suggests that a QAS stellarator with two field periods and proportions like those of ITER is a good candidate for a fusion reactor. For a demonstration reactor (DEMO) we seek an experiment that combines the best features of ITER, with a system of QAS coils providing external rotational transform, which is a measure of the poloidal field. We have discovered a configuration with unusually good quasisymmetry that is ideal for this task. PMID:27504224

Analysis of drift effects on the tokamak power scrape-off width using SOLPS-ITER

NASA Astrophysics Data System (ADS)

Meier, E. T.; Goldston, R. J.; Kaveeva, E. G.; Makowski, M. A.; Mordijck, S.; Rozhansky, V. A.; Senichenkov, I. Yu; Voskoboynikov, S. P.

2016-12-01

SOLPS-ITER, a comprehensive 2D scrape-off layer modeling package, is used to examine the physical mechanisms that set the scrape-off width ({λq} ) for inter-ELM power exhaust. Guided by Goldston’s heuristic drift (HD) model, which shows remarkable quantitative agreement with experimental data, this research examines drift effects on {λq} in a DIII-D H-mode magnetic equilibrium. As a numerical expedient, a low target recycling coefficient of 0.9 is used in the simulations, resulting in outer target plasma that is sheath limited instead of conduction limited as in the experiment. Scrape-off layer (SOL) particle diffusivity (D SOL) is scanned from 1 to 0.1 m2 s-1. Across this diffusivity range, outer divertor heat flux is dominated by a narrow (˜3-4 mm when mapped to the outer midplane) electron convection channel associated with thermoelectric current through the SOL from outer to inner divertor. An order-unity up-down ion pressure asymmetry allows net ion drift flux across the separatrix, facilitated by an artificial mechanism that mimics the anomalous electron transport required for overall ambipolarity in the HD model. At {{D}\\text{SOL}}=0.1 m2 s-1, the density fall-off length is similar to the electron temperature fall-off length, as predicted by the HD model and as seen experimentally. This research represents a step toward a deeper understanding of the power scrape-off width, and serves as a basis for extending fluid modeling to more experimentally relevant, high-collisionality regimes.

Analysis of drift effects on the tokamak power scrape-off width using SOLPS-ITER

DOE PAGES

Meier, E. T.; Goldston, R. J.; Kaveeva, E. G.; ...

2016-11-02

SOLPS-ITER, a comprehensive 2D scrape-off layer modeling package, is used to examine the physical mechanisms that set the scrape-off width (more » $${{\\lambda}_{q}}$$ ) for inter-ELM power exhaust. Guided by Goldston's heuristic drift (HD) model, which shows remarkable quantitative agreement with experimental data, this research examines drift effects on $${{\\lambda}_{q}}$$ in a DIII-D H-mode magnetic equilibrium. As a numerical expedient, a low target recycling coefficient of 0.9 is used in the simulations, resulting in outer target plasma that is sheath limited instead of conduction limited as in the experiment. Scrape-off layer (SOL) particle diffusivity (D SOL) is scanned from 1 to 0.1 m2 s –1. Across this diffusivity range, outer divertor heat flux is dominated by a narrow (~3–4mm when mapped to the outer midplane) electron convection channel associated with thermoelectric current through the SOL from outer to inner divertor. An order-unity up–down ion pressure asymmetry allows net ion drift flux across the separatrix, facilitated by an artificial mechanism that mimics the anomalous electron transport required for overall ambipolarity in the HD model. At $${{D}_{\\text{SOL}}}=0.1$$ m2 s –1, the density fall-off length is similar to the electron temperature fall-off length, as predicted by the HD model and as seen experimentally. Furthermore, this research represents a step toward a deeper understanding of the power scrape-off width, and serves as a basis for extending fluid modeling to more experimentally relevant, high-collisionality regimes.« less

Integrated modeling of plasma ramp-up in DIII-D ITER-like and high bootstrap current scenario discharges

NASA Astrophysics Data System (ADS)

Wu, M. Q.; Pan, C. K.; Chan, V. S.; Li, G. Q.; Garofalo, A. M.; Jian, X.; Liu, L.; Ren, Q. L.; Chen, J. L.; Gao, X.; Gong, X. Z.; Ding, S. Y.; Qian, J. P.; Cfetr Physics Team

2018-04-01

Time-dependent integrated modeling of DIII-D ITER-like and high bootstrap current plasma ramp-up discharges has been performed with the equilibrium code EFIT, and the transport codes TGYRO and ONETWO. Electron and ion temperature profiles are simulated by TGYRO with the TGLF (SAT0 or VX model) turbulent and NEO neoclassical transport models. The VX model is a new empirical extension of the TGLF turbulent model [Jian et al., Nucl. Fusion 58, 016011 (2018)], which captures the physics of multi-scale interaction between low-k and high-k turbulence from nonlinear gyro-kinetic simulation. This model is demonstrated to accurately model low Ip discharges from the EAST tokamak. Time evolution of the plasma current density profile is simulated by ONETWO with the experimental current ramp-up rate. The general trend of the predicted evolution of the current density profile is consistent with that obtained from the equilibrium reconstruction with Motional Stark effect constraints. The predicted evolution of βN , li , and βP also agrees well with the experiments. For the ITER-like cases, the predicted electron and ion temperature profiles using TGLF_Sat0 agree closely with the experimental measured profiles, and are demonstrably better than other proposed transport models. For the high bootstrap current case, the predicted electron and ion temperature profiles perform better in the VX model. It is found that the SAT0 model works well at high IP (>0.76 MA) while the VX model covers a wider range of plasma current ( IP > 0.6 MA). The results reported in this paper suggest that the developed integrated modeling could be a candidate for ITER and CFETR ramp-up engineering design modeling.

Developing DIII-D To Prepare For ITER And The Path To Fusion Energy

NASA Astrophysics Data System (ADS)

Buttery, Richard; Hill, David; Solomon, Wayne; Guo, Houyang; DIII-D Team

2017-10-01

DIII-D pursues the advancement of fusion energy through scientific understanding and discovery of solutions. Research targets two key goals. First, to prepare for ITER we must resolve how to use its flexible control tools to rapidly reach Q =10, and develop the scientific basis to interpret results from ITER for fusion projection. Second, we must determine how to sustain a high performance fusion core in steady state conditions, with minimal actuators and a plasma exhaust solution. DIII-D will target these missions with: (i) increased electron heating and balanced torque neutral beams to simulate burning plasma conditions (ii) new 3D coil arrays to resolve control of transients (iii) off axis current drive to study physics in steady state regimes (iv) divertors configurations to promote detachment with low upstream density (v) a reactor relevant wall to qualify materials and resolve physics in reactor-like conditions. With new diagnostics and leading edge simulation, this will position the US for success in ITER and a unique knowledge to accelerate the approach to fusion energy. Supported by the US DOE under DE-FC02-04ER54698.

Quantitative evaluation for small surface damage based on iterative difference and triangulation of 3D point cloud

NASA Astrophysics Data System (ADS)

Zhang, Yuyan; Guo, Quanli; Wang, Zhenchun; Yang, Degong

2018-03-01

This paper proposes a non-contact, non-destructive evaluation method for the surface damage of high-speed sliding electrical contact rails. The proposed method establishes a model of damage identification and calculation. A laser scanning system is built to obtain the 3D point cloud data of the rail surface. In order to extract the damage region of the rail surface, the 3D point cloud data are processed using iterative difference, nearest neighbours search and a data registration algorithm. The curvature of the point cloud data in the damage region is mapped to RGB color information, which can directly reflect the change trend of the curvature of the point cloud data in the damage region. The extracted damage region is divided into three prism elements by a method of triangulation. The volume and mass of a single element are calculated by the method of geometric segmentation. Finally, the total volume and mass of the damage region are obtained by the principle of superposition. The proposed method is applied to several typical injuries and the results are discussed. The experimental results show that the algorithm can identify damage shapes and calculate damage mass with milligram precision, which are useful for evaluating the damage in a further research stage.

Spectral-element simulations of wave propagation in complex exploration-industry models: Imaging and adjoint tomography

NASA Astrophysics Data System (ADS)

Luo, Y.; Nissen-Meyer, T.; Morency, C.; Tromp, J.

2008-12-01

Seismic imaging in the exploration industry is often based upon ray-theoretical migration techniques (e.g., Kirchhoff) or other ideas which neglect some fraction of the seismic wavefield (e.g., wavefield continuation for acoustic-wave first arrivals) in the inversion process. In a companion paper we discuss the possibility of solving the full physical forward problem (i.e., including visco- and poroelastic, anisotropic media) using the spectral-element method. With such a tool at hand, we can readily apply the adjoint method to tomographic inversions, i.e., iteratively improving an initial 3D background model to fit the data. In the context of this inversion process, we draw connections between kernels in adjoint tomography and basic imaging principles in migration. We show that the images obtained by migration are nothing but particular kinds of adjoint kernels (mainly density kernels). Migration is basically a first step in the iterative inversion process of adjoint tomography. We apply the approach to basic 2D problems involving layered structures, overthrusting faults, topography, salt domes, and poroelastic regions.

Neutron spectroscopy as a fuel ion ratio diagnostic: lessons from JET and prospects for ITER.

PubMed

Ericsson, G; Conroy, S; Gatu Johnson, M; Andersson Sundén, E; Cecconello, M; Eriksson, J; Hellesen, C; Sangaroon, S; Weiszflog, M

2010-10-01

The determination of the fuel ion ratio n(t)/n(d) in ITER is required at a precision of 20%, time resolution of 100 ms, spatial resolution of a/10, and over a range of 0.016 keV and for n(T)/n(D)<0.6. A crucial issue is the signal-to-background situation in the measurement of the weak 2.5 MeV emission from DD reactions in the presence of a background of scattered 14 MeV DT neutrons. Important experimental input and corroboration for this assessment are presented from the time-of-flight neutron spectrometer at JET where the presence of a strong component of backscattered neutrons is observed. Neutron emission components on ITER due to beam-thermal and tritium-tritium reactions can further enhance the prospects for NES.

Laplace-domain waveform modeling and inversion for the 3D acoustic-elastic coupled media

NASA Astrophysics Data System (ADS)

Shin, Jungkyun; Shin, Changsoo; Calandra, Henri

2016-06-01

Laplace-domain waveform inversion reconstructs long-wavelength subsurface models by using the zero-frequency component of damped seismic signals. Despite the computational advantages of Laplace-domain waveform inversion over conventional frequency-domain waveform inversion, an acoustic assumption and an iterative matrix solver have been used to invert 3D marine datasets to mitigate the intensive computing cost. In this study, we develop a Laplace-domain waveform modeling and inversion algorithm for 3D acoustic-elastic coupled media by using a parallel sparse direct solver library (MUltifrontal Massively Parallel Solver, MUMPS). We precisely simulate a real marine environment by coupling the 3D acoustic and elastic wave equations with the proper boundary condition at the fluid-solid interface. In addition, we can extract the elastic properties of the Earth below the sea bottom from the recorded acoustic pressure datasets. As a matrix solver, the parallel sparse direct solver is used to factorize the non-symmetric impedance matrix in a distributed memory architecture and rapidly solve the wave field for a number of shots by using the lower and upper matrix factors. Using both synthetic datasets and real datasets obtained by a 3D wide azimuth survey, the long-wavelength component of the P-wave and S-wave velocity models is reconstructed and the proposed modeling and inversion algorithm are verified. A cluster of 80 CPU cores is used for this study.

Increasing dimension of structures by 4D printing shape memory polymers via fused deposition modeling

NASA Astrophysics Data System (ADS)

Hu, G. F.; Damanpack, A. R.; Bodaghi, M.; Liao, W. H.

2017-12-01

The main objective of this paper is to introduce a 4D printing method to program shape memory polymers (SMPs) during fabrication process. Fused deposition modeling (FDM) as a filament-based printing method is employed to program SMPs during depositing the material. This method is implemented to fabricate complicated polymeric structures by self-bending features without need of any post-programming. Experiments are conducted to demonstrate feasibility of one-dimensional (1D)-to 2D and 2D-to-3D self-bending. It is shown that 3D printed plate structures can transform into masonry-inspired 3D curved shell structures by simply heating. Good reliability of SMP programming during printing process is also demonstrated. A 3D macroscopic constitutive model is established to simulate thermo-mechanical features of the printed SMPs. Governing equations are also derived to simulate programming mechanism during printing process and shape change of self-bending structures. In this respect, a finite element formulation is developed considering von-Kármán geometric nonlinearity and solved by implementing iterative Newton-Raphson scheme. The accuracy of the computational approach is checked with experimental results. It is demonstrated that the theoretical model is able to replicate the main characteristics observed in the experiments. This research is likely to advance the state of the art FDM 4D printing, and provide pertinent results and computational tool that are instrumental in design of smart materials and structures with self-bending features.

Effect of thick blanket modules on neoclassical tearing mode locking in ITER

DOE PAGES

La Haye, R. J.; Paz-Soldan, C.; Liu, Y. Q.

2016-11-03

The rotation of m/n = 2/1 tearing modes can be slowed and stopped (i.e. locked) by eddy currents induced in resistive walls in conjunction with residual error fields that provide a final 'notch' point. This is a particular issue in ITER with large inertia and low applied torque (m and n are poloidal and toroidal mode numbers respectively). Previous estimates of tolerable 2/1 island widths in ITER found that the ITER electron cyclotron current drive (ECCD) system could catch and subdue such islands before they persisted long enough and grew large enough to lock. These estimates were based on amore » forecast of initial island rotation using the n = 1 resistive penetration time of the inner vacuum vessel wall and benchmarked to DIII-D high-rotation plasmas, However, rotating tearing modes in ITER will also induce eddy currents in the blanket as the effective first wall that can shield the inner vessel. The closer fitting blanket wall has a much shorter time constant and should allow several times smaller islands to lock several times faster in ITER than previously considered; this challenges the ECCD stabilization. Here, recent DIII-D ITER baseline scenario (IBS) plasmas with low rotation through small applied torque allow better modeling and scaling to ITER with the blanket as the first resistive wall.« less

Effect of thick blanket modules on neoclassical tearing mode locking in ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

La Haye, R. J.; Paz-Soldan, C.; Liu, Y. Q.

The rotation of m/n = 2/1 tearing modes can be slowed and stopped (i.e. locked) by eddy currents induced in resistive walls in conjunction with residual error fields that provide a final 'notch' point. This is a particular issue in ITER with large inertia and low applied torque (m and n are poloidal and toroidal mode numbers respectively). Previous estimates of tolerable 2/1 island widths in ITER found that the ITER electron cyclotron current drive (ECCD) system could catch and subdue such islands before they persisted long enough and grew large enough to lock. These estimates were based on amore » forecast of initial island rotation using the n = 1 resistive penetration time of the inner vacuum vessel wall and benchmarked to DIII-D high-rotation plasmas, However, rotating tearing modes in ITER will also induce eddy currents in the blanket as the effective first wall that can shield the inner vessel. The closer fitting blanket wall has a much shorter time constant and should allow several times smaller islands to lock several times faster in ITER than previously considered; this challenges the ECCD stabilization. Here, recent DIII-D ITER baseline scenario (IBS) plasmas with low rotation through small applied torque allow better modeling and scaling to ITER with the blanket as the first resistive wall.« less

MO-DE-207A-08: Four-Dimensional Cone-Beam CT Iterative Reconstruction with Time-Ordered Chain Graph Model for Non-Periodic Organ Motion and Deformation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nakano, M; Haga, A; Hanaoka, S

2016-06-15

Purpose: The purpose of this study is to propose a new concept of four-dimensional (4D) cone-beam CT (CBCT) reconstruction for non-periodic organ motion using the Time-ordered Chain Graph Model (TCGM), and to compare the reconstructed results with the previously proposed methods, the total variation-based compressed sensing (TVCS) and prior-image constrained compressed sensing (PICCS). Methods: CBCT reconstruction method introduced in this study consisted of maximum a posteriori (MAP) iterative reconstruction combined with a regularization term derived from a concept of TCGM, which includes a constraint coming from the images of neighbouring time-phases. The time-ordered image series were concurrently reconstructed in themore » MAP iterative reconstruction framework. Angular range of projections for each time-phase was 90 degrees for TCGM and PICCS, and 200 degrees for TVCS. Two kinds of projection data, an elliptic-cylindrical digital phantom data and two clinical patients’ data, were used for reconstruction. The digital phantom contained an air sphere moving 3 cm along longitudinal axis, and temporal resolution of each method was evaluated by measuring the penumbral width of reconstructed moving air sphere. The clinical feasibility of non-periodic time-ordered 4D CBCT reconstruction was also examined using projection data of prostate cancer patients. Results: The results of reconstructed digital phantom shows that the penumbral widths of TCGM yielded the narrowest result; PICCS and TCGM were 10.6% and 17.4% narrower than that of TVCS, respectively. This suggests that the TCGM has the better temporal resolution than the others. Patients’ CBCT projection data were also reconstructed and all three reconstructed results showed motion of rectal gas and stool. The result of TCGM provided visually clearer and less blurring images. Conclusion: The present study demonstrates that the new concept for 4D CBCT reconstruction, TCGM, combined with MAP iterative reconstruction framework enables time-ordered image reconstruction with narrower time-window.« less

Three-dimensional full waveform inversion of short-period teleseismic wavefields based upon the SEM-DSM hybrid method

NASA Astrophysics Data System (ADS)

Monteiller, Vadim; Chevrot, Sébastien; Komatitsch, Dimitri; Wang, Yi

2015-08-01

We present a method for high-resolution imaging of lithospheric structures based on full waveform inversion of teleseismic waveforms. We model the propagation of seismic waves using our recently developed direct solution method/spectral-element method hybrid technique, which allows us to simulate the propagation of short-period teleseismic waves through a regional 3-D model. We implement an iterative quasi-Newton method based upon the L-BFGS algorithm, where the gradient of the misfit function is computed using the adjoint-state method. Compared to gradient or conjugate-gradient methods, the L-BFGS algorithm has a much faster convergence rate. We illustrate the potential of this method on a synthetic test case that consists of a crustal model with a crustal discontinuity at 25 km depth and a sharp Moho jump. This model contains short- and long-wavelength heterogeneities along the lateral and vertical directions. The iterative inversion starts from a smooth 1-D model derived from the IASP91 reference Earth model. We invert both radial and vertical component waveforms, starting from long-period signals filtered at 10 s and gradually decreasing the cut-off period down to 1.25 s. This multiscale algorithm quickly converges towards a model that is very close to the true model, in contrast to inversions involving short-period waveforms only, which always get trapped into a local minimum of the cost function.

Active remote sensing of snow using NMM3D/DMRT and comparison with CLPX II airborne data

USGS Publications Warehouse

Xu, X.; Liang, D.; Tsang, L.; Andreadis, K.M.; Josberger, E.G.; Lettenmaier, D.P.; Cline, D.W.; Yueh, S.H.

2010-01-01

We applied the Numerical Maxwell Model of three-dimensional simulations (NMM3D) in the Dense Media Radiative Theory (DMRT) to calculate backscattering coefficients. The particles' positions are computer-generated and the subsequent Foldy-Lax equations solved numerically. The phase matrix in NMM3D has significant cross-polarization, particularly when the particles are densely packed. The NMM3D model is combined with DMRT in calculating the microwave scattering by dry snow. The NMM3D/DMRT equations are solved by an iterative solution up to the second order in the case of small to moderate optical thickness. The numerical results of NMM3D/DMRT are illustrated and compared with QCA/DMRT. The QCA/DMRT and NMM3D/DMRT results are also applied to compare with data from two specific datasets from the second Cold Land Processes Experiment (CLPX II) in Alaska and Colorado. The data are obtained at the Ku-band (13.95 GHz) observations using airborne imaging polarimetric scatterometer (POLSCAT). It is shown that the model predictions agree with the field measurements for both co-polarization and cross-polarization. For the Alaska region, the average snow depth and snow density are used as the inputs for DMRT. The grain size, selected from within the range of the ground measurements, is used as a best-fit parameter within the range. For the Colorado region, we use the Variable Infiltration Capacity Model (VIC) to obtain the input snow profiles for NMM3D/DMRT. ?? 2010 IEEE.

Automatic pole-like object modeling via 3D part-based analysis of point cloud

NASA Astrophysics Data System (ADS)

He, Liu; Yang, Haoxiang; Huang, Yuchun

2016-10-01

Pole-like objects, including trees, lampposts and traffic signs, are indispensable part of urban infrastructure. With the advance of vehicle-based laser scanning (VLS), massive point cloud of roadside urban areas becomes applied in 3D digital city modeling. Based on the property that different pole-like objects have various canopy parts and similar trunk parts, this paper proposed the 3D part-based shape analysis to robustly extract, identify and model the pole-like objects. The proposed method includes: 3D clustering and recognition of trunks, voxel growing and part-based 3D modeling. After preprocessing, the trunk center is identified as the point that has local density peak and the largest minimum inter-cluster distance. Starting from the trunk centers, the remaining points are iteratively clustered to the same centers of their nearest point with higher density. To eliminate the noisy points, cluster border is refined by trimming boundary outliers. Then, candidate trunks are extracted based on the clustering results in three orthogonal planes by shape analysis. Voxel growing obtains the completed pole-like objects regardless of overlaying. Finally, entire trunk, branch and crown part are analyzed to obtain seven feature parameters. These parameters are utilized to model three parts respectively and get signal part-assembled 3D model. The proposed method is tested using the VLS-based point cloud of Wuhan University, China. The point cloud includes many kinds of trees, lampposts and other pole-like posters under different occlusions and overlaying. Experimental results show that the proposed method can extract the exact attributes and model the roadside pole-like objects efficiently.

Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish

PubMed Central

Correia, Teresa; Yin, Jun; Ramel, Marie-Christine; Andrews, Natalie; Katan, Matilda; Bugeon, Laurence; Dallman, Margaret J.; McGinty, James; Frankel, Paul; French, Paul M. W.; Arridge, Simon

2015-01-01

Optical projection tomography (OPT) provides a non-invasive 3-D imaging modality that can be applied to longitudinal studies of live disease models, including in zebrafish. Current limitations include the requirement of a minimum number of angular projections for reconstruction of reasonable OPT images using filtered back projection (FBP), which is typically several hundred, leading to acquisition times of several minutes. It is highly desirable to decrease the number of required angular projections to decrease both the total acquisition time and the light dose to the sample. This is particularly important to enable longitudinal studies, which involve measurements of the same fish at different time points. In this work, we demonstrate that the use of an iterative algorithm to reconstruct sparsely sampled OPT data sets can provide useful 3-D images with 50 or fewer projections, thereby significantly decreasing the minimum acquisition time and light dose while maintaining image quality. A transgenic zebrafish embryo with fluorescent labelling of the vasculature was imaged to acquire densely sampled (800 projections) and under-sampled data sets of transmitted and fluorescence projection images. The under-sampled OPT data sets were reconstructed using an iterative total variation-based image reconstruction algorithm and compared against FBP reconstructions of the densely sampled data sets. To illustrate the potential for quantitative analysis following rapid OPT data acquisition, a Hessian-based method was applied to automatically segment the reconstructed images to select the vasculature network. Results showed that 3-D images of the zebrafish embryo and its vasculature of sufficient visual quality for quantitative analysis can be reconstructed using the iterative algorithm from only 32 projections—achieving up to 28 times improvement in imaging speed and leading to total acquisition times of a few seconds. PMID:26308086

A Parallel Numerical Algorithm To Solve Linear Systems Of Equations Emerging From 3D Radiative Transfer

NASA Astrophysics Data System (ADS)

Wichert, Viktoria; Arkenberg, Mario; Hauschildt, Peter H.

2016-10-01

Highly resolved state-of-the-art 3D atmosphere simulations will remain computationally extremely expensive for years to come. In addition to the need for more computing power, rethinking coding practices is necessary. We take a dual approach by introducing especially adapted, parallel numerical methods and correspondingly parallelizing critical code passages. In the following, we present our respective work on PHOENIX/3D. With new parallel numerical algorithms, there is a big opportunity for improvement when iteratively solving the system of equations emerging from the operator splitting of the radiative transfer equation J = ΛS. The narrow-banded approximate Λ-operator Λ* , which is used in PHOENIX/3D, occurs in each iteration step. By implementing a numerical algorithm which takes advantage of its characteristic traits, the parallel code's efficiency is further increased and a speed-up in computational time can be achieved.

Validation of a Node-Centered Wall Function Model for the Unstructured Flow Code FUN3D

NASA Technical Reports Server (NTRS)

Carlson, Jan-Renee; Vasta, Veer N.; White, Jeffery

2015-01-01

In this paper, the implementation of two wall function models in the Reynolds averaged Navier-Stokes (RANS) computational uid dynamics (CFD) code FUN3D is described. FUN3D is a node centered method for solving the three-dimensional Navier-Stokes equations on unstructured computational grids. The first wall function model, based on the work of Knopp et al., is used in conjunction with the one-equation turbulence model of Spalart-Allmaras. The second wall function model, also based on the work of Knopp, is used in conjunction with the two-equation k-! turbulence model of Menter. The wall function models compute the wall momentum and energy flux, which are used to weakly enforce the wall velocity and pressure flux boundary conditions in the mean flow momentum and energy equations. These wall conditions are implemented in an implicit form where the contribution of the wall function model to the Jacobian are also included. The boundary conditions of the turbulence transport equations are enforced explicitly (strongly) on all solid boundaries. The use of the wall function models is demonstrated on four test cases: a at plate boundary layer, a subsonic di user, a 2D airfoil, and a 3D semi-span wing. Where possible, different near-wall viscous spacing tactics are examined. Iterative residual convergence was obtained in most cases. Solution results are compared with theoretical and experimental data for several variations of grid spacing. In general, very good comparisons with data were achieved.

Advances in Global Adjoint Tomography - Data Assimilation and Inversion Strategy

NASA Astrophysics Data System (ADS)

Ruan, Y.; Lei, W.; Lefebvre, M. P.; Modrak, R. T.; Smith, J. A.; Bozdag, E.; Tromp, J.

2016-12-01

Seismic tomography provides the most direct way to understand Earth's interior by imaging elastic heterogeneity, anisotropy and anelasticity. Resolving thefine structure of these properties requires accurate simulations of seismic wave propagation in complex 3-D Earth models. On the supercomputer "Titan" at Oak Ridge National Laboratory, we are employing a spectral-element method (Komatitsch & Tromp 1999, 2002) in combination with an adjoint method (Tromp et al., 2005) to accurately calculate theoretical seismograms and Frechet derivatives. Using 253 carefully selected events, Bozdag et al. (2016) iteratively determined a transversely isotropic earth model (GLAD_M15) using 15 preconditioned conjugate-gradient iterations. To obtain higher resolution images of the mantle, we have expanded our database to more than 4,220 Mw5.0-7.0 events occurred between 1995 and 2014. Instead of using the entire database all at once, we choose to draw subsets of about 1,000 events from our database for each iteration to achieve a faster convergence rate with limited computing resources. To provide good coverage of deep structures, we selected approximately 700 deep and intermedia earthquakes and 300 shallow events to start a new iteration. We reinverted the CMT solutions of these events in the latest model, and recalculated synthetic seismograms. Using the synthetics as reference seismograms, we selected time windows that show good agreement with data and make measurements within the windows. From the measurements we further assess the overall quality of each event and station, and exclude bad measurements base upon certain criteria. So far, with very conservative criteria, we have assimilated more than 8.0 million windows from 1,000 earthquakes in three period bands for the new iteration. For subsequent iterations, we will change the period bands and window selecting criteria to include more window. In the inversion, dense array data (e.g., USArray) usually dominate model updates. In order to better handle this issue, we introduced weighting of stations and events based upon their relative distance and showed that the contribution from dense array is better balanced in the Frechet derivatives. We will present a summary of this form of data assimilation and preliminary results of the first few iterations.

3D coherent X-ray diffractive imaging of an Individual colloidal crystal grain

NASA Astrophysics Data System (ADS)

Shabalin, A.; Meijer, J.-M.; Sprung, M.; Petukhov, A. V.; Vartanyants, I. A.

Self-assembled colloidal crystals represent an important model system to study nucleation phenomena and solid-solid phase transitions. They are attractive for applications in photonics and sensorics. We present results of a coherent x-ray diffractive imaging experiment performed on a single colloidal crystal grain. The full three-dimensional (3D) reciprocal space map measured by an azimuthal rotational scan contained several orders of Bragg reflections together with the coherent interference signal between them. Applying the iterative phase retrieval approach, the 3D structure of the crystal grain was reconstructed and positions of individual colloidal particles were resolved. We identified an exact stacking sequence of hexagonal close-packed layers including planar and linear defects. Our results open up a breakthrough in applications of coherent x-ray diffraction for visualization of the inner 3D structure of different mesoscopic materials, such as photonic crystals. Present address: University of California - San Diego, USA.

DAVIS: A direct algorithm for velocity-map imaging system

NASA Astrophysics Data System (ADS)

Harrison, G. R.; Vaughan, J. C.; Hidle, B.; Laurent, G. M.

2018-05-01

In this work, we report a direct (non-iterative) algorithm to reconstruct the three-dimensional (3D) momentum-space picture of any charged particles collected with a velocity-map imaging system from the two-dimensional (2D) projected image captured by a position-sensitive detector. The method consists of fitting the measured image with the 2D projection of a model 3D velocity distribution defined by the physics of the light-matter interaction. The meaningful angle-correlated information is first extracted from the raw data by expanding the image with a complete set of Legendre polynomials. Both the particle's angular and energy distributions are then directly retrieved from the expansion coefficients. The algorithm is simple, easy to implement, fast, and explicitly takes into account the pixelization effect in the measurement.

Strategies for the coupling of global and local crystal growth models

NASA Astrophysics Data System (ADS)

Derby, Jeffrey J.; Lun, Lisa; Yeckel, Andrew

2007-05-01

The modular coupling of existing numerical codes to model crystal growth processes will provide for maximum effectiveness, capability, and flexibility. However, significant challenges are posed to make these coupled models mathematically self-consistent and algorithmically robust. This paper presents sample results from a coupling of the CrysVUn code, used here to compute furnace-scale heat transfer, and Cats2D, used to calculate melt fluid dynamics and phase-change phenomena, to form a global model for a Bridgman crystal growth system. However, the strategy used to implement the CrysVUn-Cats2D coupling is unreliable and inefficient. The implementation of under-relaxation within a block Gauss-Seidel iteration is shown to be ineffective for improving the coupling performance in a model one-dimensional problem representative of a melt crystal growth model. Ideas to overcome current convergence limitations using approximations to a full Newton iteration method are discussed.

Meshless deformable models for 3D cardiac motion and strain analysis from tagged MRI.

PubMed

Wang, Xiaoxu; Chen, Ting; Zhang, Shaoting; Schaerer, Joël; Qian, Zhen; Huh, Suejung; Metaxas, Dimitris; Axel, Leon

2015-01-01

Tagged magnetic resonance imaging (TMRI) provides a direct and noninvasive way to visualize the in-wall deformation of the myocardium. Due to the through-plane motion, the tracking of 3D trajectories of the material points and the computation of 3D strain field call for the necessity of building 3D cardiac deformable models. The intersections of three stacks of orthogonal tagging planes are material points in the myocardium. With these intersections as control points, 3D motion can be reconstructed with a novel meshless deformable model (MDM). Volumetric MDMs describe an object as point cloud inside the object boundary and the coordinate of each point can be written in parametric functions. A generic heart mesh is registered on the TMRI with polar decomposition. A 3D MDM is generated and deformed with MR image tagging lines. Volumetric MDMs are deformed by calculating the dynamics function and minimizing the local Laplacian coordinates. The similarity transformation of each point is computed by assuming its neighboring points are making the same transformation. The deformation is computed iteratively until the control points match the target positions in the consecutive image frame. The 3D strain field is computed from the 3D displacement field with moving least squares. We demonstrate that MDMs outperformed the finite element method and the spline method with a numerical phantom. Meshless deformable models can track the trajectory of any material point in the myocardium and compute the 3D strain field of any particular area. The experimental results on in vivo healthy and patient heart MRI show that the MDM can fully recover the myocardium motion in three dimensions. Copyright © 2014. Published by Elsevier Inc.

Meshless deformable models for 3D cardiac motion and strain analysis from tagged MRI

PubMed Central

Wang, Xiaoxu; Chen, Ting; Zhang, Shaoting; Schaerer, Joël; Qian, Zhen; Huh, Suejung; Metaxas, Dimitris; Axel, Leon

2016-01-01

Tagged magnetic resonance imaging (TMRI) provides a direct and noninvasive way to visualize the in-wall deformation of the myocardium. Due to the through-plane motion, the tracking of 3D trajectories of the material points and the computation of 3D strain field call for the necessity of building 3D cardiac deformable models. The intersections of three stacks of orthogonal tagging planes are material points in the myocardium. With these intersections as control points, 3D motion can be reconstructed with a novel meshless deformable model (MDM). Volumetric MDMs describe an object as point cloud inside the object boundary and the coordinate of each point can be written in parametric functions. A generic heart mesh is registered on the TMRI with polar decomposition. A 3D MDM is generated and deformed with MR image tagging lines. Volumetric MDMs are deformed by calculating the dynamics function and minimizing the local Laplacian coordinates. The similarity transformation of each point is computed by assuming its neighboring points are making the same transformation. The deformation is computed iteratively until the control points match the target positions in the consecutive image frame. The 3D strain field is computed from the 3D displacement field with moving least squares. We demonstrate that MDMs outperformed the finite element method and the spline method with a numerical phantom. Meshless deformable models can track the trajectory of any material point in the myocardium and compute the 3D strain field of any particular area. The experimental results on in vivo healthy and patient heart MRI show that the MDM can fully recover the myocardium motion in three dimensions. PMID:25157446

SU-F-BRCD-09: Total Variation (TV) Based Fast Convergent Iterative CBCT Reconstruction with GPU Acceleration.

PubMed

Xu, Q; Yang, D; Tan, J; Anastasio, M

2012-06-01

To improve image quality and reduce imaging dose in CBCT for radiation therapy applications and to realize near real-time image reconstruction based on use of a fast convergence iterative algorithm and acceleration by multi-GPUs. An iterative image reconstruction that sought to minimize a weighted least squares cost function that employed total variation (TV) regularization was employed to mitigate projection data incompleteness and noise. To achieve rapid 3D image reconstruction (< 1 min), a highly optimized multiple-GPU implementation of the algorithm was developed. The convergence rate and reconstruction accuracy were evaluated using a modified 3D Shepp-Logan digital phantom and a Catphan-600 physical phantom. The reconstructed images were compared with the clinical FDK reconstruction results. Digital phantom studies showed that only 15 iterations and 60 iterations are needed to achieve algorithm convergence for 360-view and 60-view cases, respectively. The RMSE was reduced to 10-4 and 10-2, respectively, by using 15 iterations for each case. Our algorithm required 5.4s to complete one iteration for the 60-view case using one Tesla C2075 GPU. The few-view study indicated that our iterative algorithm has great potential to reduce the imaging dose and preserve good image quality. For the physical Catphan studies, the images obtained from the iterative algorithm possessed better spatial resolution and higher SNRs than those obtained from by use of a clinical FDK reconstruction algorithm. We have developed a fast convergence iterative algorithm for CBCT image reconstruction. The developed algorithm yielded images with better spatial resolution and higher SNR than those produced by a commercial FDK tool. In addition, from the few-view study, the iterative algorithm has shown great potential for significantly reducing imaging dose. We expect that the developed reconstruction approach will facilitate applications including IGART and patient daily CBCT-based treatment localization. © 2012 American Association of Physicists in Medicine.

Hypocenter relocation of microseismic events using a 3-D velocity model of the shale-gas production site in the Horn River Basin

NASA Astrophysics Data System (ADS)

Woo, J. U.; Kim, J. H.; Rhie, J.; Kang, T. S.

2016-12-01

Microseismic monitoring is a crucial process to evaluate the efficiency of hydro-fracking and to understand the development of fracture networks. Consequently, it can provide valuable information for designing the post hydro-fracking stages and estimating the stimulated rock volumes. The fundamental information is a set of source parameters of microseismic events. The most important parameter is the hypocenter of event, and thus the accurate hypocenter determination is a key for the successful microseismic monitoring. The accuracy of hypocenters for a given dataset of seismic phase arrival times is dependent on that of the velocity model used in the seismic analysis. In this study, we evaluated how a 3-D model can affect the accuracy of hypocenters. We used auto-picked P- and S-wave travel-time data of about 8,000 events at the commercial shale gas production site in the Horn River Basin, Canada. The initial hypocenters of the events were determined using a single-difference linear inversion algorithm with a 1-D velocity model obtained from the well-logging data. Then we iteratively inverted travel times of events for the 3-D velocity perturbations and relocated their hypocenters using double-difference algorithm. Significant reduction of the errors in the final hypocenter was obtained. This result indicates that the 3-D model is useful for improving the performance of microseismic monitoring.

Multi-modal imaging, model-based tracking, and mixed reality visualisation for orthopaedic surgery

PubMed Central

Fuerst, Bernhard; Tateno, Keisuke; Johnson, Alex; Fotouhi, Javad; Osgood, Greg; Tombari, Federico; Navab, Nassir

2017-01-01

Orthopaedic surgeons are still following the decades old workflow of using dozens of two-dimensional fluoroscopic images to drill through complex 3D structures, e.g. pelvis. This Letter presents a mixed reality support system, which incorporates multi-modal data fusion and model-based surgical tool tracking for creating a mixed reality environment supporting screw placement in orthopaedic surgery. A red–green–blue–depth camera is rigidly attached to a mobile C-arm and is calibrated to the cone-beam computed tomography (CBCT) imaging space via iterative closest point algorithm. This allows real-time automatic fusion of reconstructed surface and/or 3D point clouds and synthetic fluoroscopic images obtained through CBCT imaging. An adapted 3D model-based tracking algorithm with automatic tool segmentation allows for tracking of the surgical tools occluded by hand. This proposed interactive 3D mixed reality environment provides an intuitive understanding of the surgical site and supports surgeons in quickly localising the entry point and orienting the surgical tool during screw placement. The authors validate the augmentation by measuring target registration error and also evaluate the tracking accuracy in the presence of partial occlusion. PMID:29184659

Too Little Too Soon? Modeling the Risks of Spiral Development

DTIC Science & Technology

2007-04-30

270 315 360 405 450 495 540 585 630 675 720 765 810 855 900 Time (Week) Work started and active PhIt [Requirements,Iter1] : JavelinCalibration work...packages1 1 1 Work started and active PhIt [Technology,Iter1] : JavelinCalibration work packages2 2 2 Work started and active PhIt [Design,Iter1...JavelinCalibration work packages3 3 3 3 Work started and active PhIt [Manufacturing,Iter1] : JavelinCalibration work packages4 4 Work started and active PhIt

Evidence of toroidally localized turbulence with applied 3D fields in the DIII-D tokamak

DOE PAGES

Wilcox, R. S.; Shafer, M. W.; Ferraro, N. M.; ...

2016-09-21

New evidence indicates that there is significant 3D variation in density fluctuations near the boundary of weakly 3D tokamak plasmas when resonant magnetic perturbations are applied to suppress transient edge instabilities. The increase in fluctuations is concomitant with an increase in the measured density gradient, suggesting that this toroidally localized gradient increase could be a mechanism for turbulence destabilization in localized flux tubes. Two-fluid magnetohydrodynamic simulations find that, although changes to the magnetic field topology are small, there is a significant 3D variation of the density gradient within the flux surfaces that is extended along field lines. This modeling agreesmore » qualitatively with the measurements. The observed gradient and fluctuation asymmetries are proposed as a mechanism by which global profile gradients in the pedestal could be relaxed due to a local change in the 3D equilibrium. In conclusion, these processes may play an important role in pedestal and scrape-off layer transport in ITER and other future tokamak devices with small applied 3D fields.« less

Advances in the high bootstrap fraction regime on DIII-D towards the Q  =  5 mission of ITER steady state

NASA Astrophysics Data System (ADS)

Qian, J. P.; Garofalo, A. M.; Gong, X. Z.; Ren, Q. L.; Ding, S. Y.; Solomon, W. M.; Xu, G. S.; Grierson, B. A.; Guo, W. F.; Holcomb, C. T.; McClenaghan, J.; McKee, G. R.; Pan, C. K.; Huang, J.; Staebler, G. M.; Wan, B. N.

2017-05-01

Recent EAST/DIII-D joint experiments on the high poloidal beta {β\\text{P}} regime in DIII-D have extended operation with internal transport barriers (ITBs) and excellent energy confinement (H 98y2 ~ 1.6) to higher plasma current, for lower q 95  ⩽  7.0, and more balanced neutral beam injection (NBI) (torque injection  <  2 Nm), for lower plasma rotation than previous results (Garofalo et al, IAEA 2014, Gong et al 2014 IAEA Int. Conf. on Fusion Energy). Transport analysis and experimental measurements at low toroidal rotation suggest that the E  ×  B shear effect is not key to the ITB formation in these high {β\\text{P}} discharges. Experiments and TGLF modeling show that the Shafranov shift has a key stabilizing effect on turbulence. Extrapolation of the DIII-D results using a 0D model shows that with the improved confinement, the high bootstrap fraction regime could achieve fusion gain Q  =  5 in ITER at {β\\text{N}} ~ 2.9 and q 95 ~ 7. With the optimization of q(0), the required improved confinement is achievable when using 1.5D TGLF-SAT1 for transport simulations. Results reported in this paper suggest that the DIII-D high {β\\text{P}} scenario could be a candidate for ITER steady state operation.

Wide-range measurement of thermal effusivity using molybdenum thin film with low thermal conductivity for thermal microscopes

NASA Astrophysics Data System (ADS)

Miyake, Shugo; Matsui, Genzou; Ohta, Hiromichi; Hatori, Kimihito; Taguchi, Kohei; Yamamoto, Suguru

2017-07-01

Thermal microscopes are a useful technology to investigate the spatial distribution of the thermal transport properties of various materials. However, for high thermal effusivity materials, the estimated values of thermophysical parameters based on the conventional 1D heat flow model are known to be higher than the values of materials in the literature. Here, we present a new procedure to solve the problem which calculates the theoretical temperature response with the 3D heat flow and measures reference materials which involve known values of thermal effusivity and heat capacity. In general, a complicated numerical iterative method and many thermophysical parameters are required for the calculation in the 3D heat flow model. Here, we devised a simple procedure by using a molybdenum (Mo) thin film with low thermal conductivity on the sample surface, enabling us to measure over a wide thermal effusivity range for various materials.

Salient Point Detection in Protrusion Parts of 3D Object Robust to Isometric Variations

NASA Astrophysics Data System (ADS)

Mirloo, Mahsa; Ebrahimnezhad, Hosein

2018-03-01

In this paper, a novel method is proposed to detect 3D object salient points robust to isometric variations and stable against scaling and noise. Salient points can be used as the representative points from object protrusion parts in order to improve the object matching and retrieval algorithms. The proposed algorithm is started by determining the first salient point of the model based on the average geodesic distance of several random points. Then, according to the previous salient point, a new point is added to this set of points in each iteration. By adding every salient point, decision function is updated. Hence, a condition is created for selecting the next point in which the iterative point is not extracted from the same protrusion part so that drawing out of a representative point from every protrusion part is guaranteed. This method is stable against model variations with isometric transformations, scaling, and noise with different levels of strength due to using a feature robust to isometric variations and considering the relation between the salient points. In addition, the number of points used in averaging process is decreased in this method, which leads to lower computational complexity in comparison with the other salient point detection algorithms.

TH-EF-207A-05: Feasibility of Applying SMEIR Method On Small Animal 4D Cone Beam CT Imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Y; Zhang, Y; Shao, Y

Purpose: Small animal cone beam CT imaging has been widely used in preclinical research. Due to the higher respiratory rate and heat beats of small animals, motion blurring is inevitable and needs to be corrected in the reconstruction. Simultaneous motion estimation and image reconstruction (SMEIR) method, which uses projection images of all phases, proved to be effective in motion model estimation and able to reconstruct motion-compensated images. We demonstrate the application of SMEIR for small animal 4D cone beam CT imaging by computer simulations on a digital rat model. Methods: The small animal CBCT imaging system was simulated with themore » source-to-detector distance of 300 mm and the source-to-object distance of 200 mm. A sequence of rat phantom were generated with 0.4 mm{sup 3} voxel size. The respiratory cycle was taken as 1.0 second and the motions were simulated with a diaphragm motion of 2.4mm and an anterior-posterior expansion of 1.6 mm. The projection images were calculated using a ray-tracing method, and 4D-CBCT were reconstructed using SMEIR and FDK methods. The SMEIR method iterates over two alternating steps: 1) motion-compensated iterative image reconstruction by using projections from all respiration phases and 2) motion model estimation from projections directly through a 2D-3D deformable registration of the image obtained in the first step to projection images of other phases. Results: The images reconstructed using SMEIR method reproduced the features in the original phantom. Projections from the same phase were also reconstructed using FDK method. Compared with the FDK results, the images from SMEIR method substantially improve the image quality with minimum artifacts. Conclusion: We demonstrate that it is viable to apply SMEIR method to reconstruct small animal 4D-CBCT images.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Dengwang; Wang, Jie; Kapp, Daniel S.

Purpose: The aim of this work is to develop a robust algorithm for accurate segmentation of liver with special attention paid to the problems with fuzzy edges and tumor. Methods: 200 CT images were collected from radiotherapy treatment planning system. 150 datasets are selected as the panel data for shape dictionary and parameters estimation. The remaining 50 datasets were used as test images. In our study liver segmentation was formulated as optimization process of implicit function. The liver region was optimized via local and global optimization during iterations. Our method consists five steps: 1)The livers from the panel data weremore » segmented manually by physicians, and then We estimated the parameters of GMM (Gaussian mixture model) and MRF (Markov random field). Shape dictionary was built by utilizing the 3D liver shapes. 2)The outlines of chest and abdomen were located according to rib structure in the input images, and the liver region was initialized based on GMM. 3)The liver shape for each 2D slice was adjusted using MRF within the neighborhood of liver edge for local optimization. 4)The 3D liver shape was corrected by employing SSR (sparse shape representation) based on liver shape dictionary for global optimization. Furthermore, H-PSO(Hybrid Particle Swarm Optimization) was employed to solve the SSR equation. 5)The corrected 3D liver was divided into 2D slices as input data of the third step. The iteration was repeated within the local optimization and global optimization until it satisfied the suspension conditions (maximum iterations and changing rate). Results: The experiments indicated that our method performed well even for the CT images with fuzzy edge and tumors. Comparing with physician delineated results, the segmentation accuracy with the 50 test datasets (VOE, volume overlap percentage) was on average 91%–95%. Conclusion: The proposed automatic segmentation method provides a sensible technique for segmentation of CT images. This work is supported by NIH/NIBIB (1R01-EB016777), National Natural Science Foundation of China (No.61471226 and No.61201441), Research funding from Shandong Province (No.BS2012DX038 and No.J12LN23), and Research funding from Jinan City (No.201401221 and No.20120109)« less

Large signal design - Performance and simulation of a 3 W C-band GaAs power MMIC

NASA Astrophysics Data System (ADS)

White, Paul M.; Hendrickson, Mary A.; Chang, Wayne H.; Curtice, Walter R.

1990-04-01

This paper describes a C-band GaAs power MMIC amplifier that achieved a gain of 17 dB and 1 dB compressed CW power output of 34 dBm across a 4.5-6.25-GHz frequency range, without design iteration. The first-pass design success was achieved due to the application of a harmonic balance simulator to define the optimum output load, using a large-signal FET model determined statistically on a well controlled foundry-ready process line. The measured performance was close to that predicted by a full harmonic balance circuit analysis.

An efficient parallel algorithm: Poststack and prestack Kirchhoff 3D depth migration using flexi-depth iterations

NASA Astrophysics Data System (ADS)

Rastogi, Richa; Srivastava, Abhishek; Khonde, Kiran; Sirasala, Kirannmayi M.; Londhe, Ashutosh; Chavhan, Hitesh

2015-07-01

This paper presents an efficient parallel 3D Kirchhoff depth migration algorithm suitable for current class of multicore architecture. The fundamental Kirchhoff depth migration algorithm exhibits inherent parallelism however, when it comes to 3D data migration, as the data size increases the resource requirement of the algorithm also increases. This challenges its practical implementation even on current generation high performance computing systems. Therefore a smart parallelization approach is essential to handle 3D data for migration. The most compute intensive part of Kirchhoff depth migration algorithm is the calculation of traveltime tables due to its resource requirements such as memory/storage and I/O. In the current research work, we target this area and develop a competent parallel algorithm for post and prestack 3D Kirchhoff depth migration, using hybrid MPI+OpenMP programming techniques. We introduce a concept of flexi-depth iterations while depth migrating data in parallel imaging space, using optimized traveltime table computations. This concept provides flexibility to the algorithm by migrating data in a number of depth iterations, which depends upon the available node memory and the size of data to be migrated during runtime. Furthermore, it minimizes the requirements of storage, I/O and inter-node communication, thus making it advantageous over the conventional parallelization approaches. The developed parallel algorithm is demonstrated and analysed on Yuva II, a PARAM series of supercomputers. Optimization, performance and scalability experiment results along with the migration outcome show the effectiveness of the parallel algorithm.

Status of the Negative Ion Based Heating and Diagnostic Neutral Beams for ITER

NASA Astrophysics Data System (ADS)

Schunke, B.; Bora, D.; Hemsworth, R.; Tanga, A.

2009-03-01

The current baseline of ITER foresees 2 Heating Neutral Beam (HNB's) systems based on negative ion technology, each accelerating to 1 MeV 40 A of D- and capable of delivering 16.5 MW of D0 to the ITER plasma, with a 3rd HNB injector foreseen as an upgrade option [1]. In addition a dedicated Diagnostic Neutral Beam (DNB) accelerating 60 A of H- to 100 keV will inject ≈15 A equivalent of H0 for charge exchange recombination spectroscopy and other diagnostics. Recently the RF driven negative ion source developed by IPP Garching has replaced the filamented ion source as the reference ITER design. The RF source developed at IPP, which is approximately a quarter scale of the source needed for ITER, is expected to have reduced caesium consumption compared to the filamented arc driven ion source. The RF driven source has demonstrated adequate accelerated D- and H- current densities as well as long-pulse operation [2, 3]. It is foreseen that the HNB's and the DNB will use the same negative ion source. Experiments with a half ITER-size ion source are on-going at IPP and the operation of a full-scale ion source will be demonstrated, at full power and pulse length, in the dedicated Ion Source Test Bed (ISTF), which will be part of the Neutral Beam Test Facility (NBTF), in Padua, Italy. This facility will carry out the necessary R&D for the HNB's for ITER and demonstrate operation of the full-scale HNB beamline. An overview of the current status of the neutral beam (NB) systems and the chosen configuration will be given and the ongoing integration effort into the ITER plant will be highlighted. It will be demonstrated how installation and maintenance logistics have influenced the design, notably the top access scheme facilitating access for maintenance and installation. The impact of the ITER Design Review and recent design change requests (DCRs) will be briefly discussed, including start-up and commissioning issues. The low current hydrogen phase now envisaged for start-up imposed specific requirements for operating the HNB's at full beam power. It has been decided to address the shinethrough issue by installing wall armour protection, which increases the operational space in all scenarios. Other NB related issues identified by the Design Review process will be discussed and the possible changes to the ITER baseline indicated.

Clinical application and validation of an iterative forward projection matching algorithm for permanent brachytherapy seed localization from conebeam-CT x-ray projections.

PubMed

Pokhrel, Damodar; Murphy, Martin J; Todor, Dorin A; Weiss, Elisabeth; Williamson, Jeffrey F

2010-09-01

To experimentally validate a new algorithm for reconstructing the 3D positions of implanted brachytherapy seeds from postoperatively acquired 2D conebeam-CT (CBCT) projection images. The iterative forward projection matching (IFPM) algorithm finds the 3D seed geometry that minimizes the sum of the squared intensity differences between computed projections of an initial estimate of the seed configuration and radiographic projections of the implant. In-house machined phantoms, containing arrays of 12 and 72 seeds, respectively, are used to validate this method. Also, four 103Pd postimplant patients are scanned using an ACUITY digital simulator. Three to ten x-ray images are selected from the CBCT projection set and processed to create binary seed-only images. To quantify IFPM accuracy, the reconstructed seed positions are forward projected and overlaid on the measured seed images to find the nearest-neighbor distance between measured and computed seed positions for each image pair. Also, the estimated 3D seed coordinates are compared to known seed positions in the phantom and clinically obtained VariSeed planning coordinates for the patient data. For the phantom study, seed localization error is (0.58 +/- 0.33) mm. For all four patient cases, the mean registration error is better than 1 mm while compared against the measured seed projections. IFPM converges in 20-28 iterations, with a computation time of about 1.9-2.8 min/ iteration on a 1 GHz processor. The IFPM algorithm avoids the need to match corresponding seeds in each projection as required by standard back-projection methods. The authors' results demonstrate approximately 1 mm accuracy in reconstructing the 3D positions of brachytherapy seeds from the measured 2D projections. This algorithm also successfully localizes overlapping clustered and highly migrated seeds in the implant.

Clinical application and validation of an iterative forward projection matching algorithm for permanent brachytherapy seed localization from conebeam-CT x-ray projections

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pokhrel, Damodar; Murphy, Martin J.; Todor, Dorin A.

2010-09-15

Purpose: To experimentally validate a new algorithm for reconstructing the 3D positions of implanted brachytherapy seeds from postoperatively acquired 2D conebeam-CT (CBCT) projection images. Methods: The iterative forward projection matching (IFPM) algorithm finds the 3D seed geometry that minimizes the sum of the squared intensity differences between computed projections of an initial estimate of the seed configuration and radiographic projections of the implant. In-house machined phantoms, containing arrays of 12 and 72 seeds, respectively, are used to validate this method. Also, four {sup 103}Pd postimplant patients are scanned using an ACUITY digital simulator. Three to ten x-ray images are selectedmore » from the CBCT projection set and processed to create binary seed-only images. To quantify IFPM accuracy, the reconstructed seed positions are forward projected and overlaid on the measured seed images to find the nearest-neighbor distance between measured and computed seed positions for each image pair. Also, the estimated 3D seed coordinates are compared to known seed positions in the phantom and clinically obtained VariSeed planning coordinates for the patient data. Results: For the phantom study, seed localization error is (0.58{+-}0.33) mm. For all four patient cases, the mean registration error is better than 1 mm while compared against the measured seed projections. IFPM converges in 20-28 iterations, with a computation time of about 1.9-2.8 min/iteration on a 1 GHz processor. Conclusions: The IFPM algorithm avoids the need to match corresponding seeds in each projection as required by standard back-projection methods. The authors' results demonstrate {approx}1 mm accuracy in reconstructing the 3D positions of brachytherapy seeds from the measured 2D projections. This algorithm also successfully localizes overlapping clustered and highly migrated seeds in the implant.« less

Wavefield simulations of earthquakes in Alaska for tomographic inversion

NASA Astrophysics Data System (ADS)

Silwal, V.; Tape, C.; Casarotti, E.

2017-12-01

We assemble a catalog of moment tensors and a three-dimensional seismic velocity model for mainland Alaska, in preparation for an iterative tomographic inversion using spectral-element and adjoint methods. The catalog contains approximately 200 earthquakes with Mw ≥ 4.0 that generate good long-period (≥6 s) signals for stations at distances up to approximately 500 km. To maximize the fraction of usable stations per earthquake, we divide our model into three subregions for simulations: south-central Alaska, central Alaska, and eastern Alaska. The primary geometrical interfaces in the model are the Moho surface, the basement surface of major sedimentary basins, and the topographic surface. The crustal and upper mantle tomographic model is from Eberhart-Phillips et al. (2006), but modified by removing the uppermost slow layer, then embedding sedimentary basin models for Cook Inlet basin, Susitna basin, and Nenana basin. We compute 3D synthetic seismograms using the spectral-element method. We demonstrate the accuracy of the initial three-dimensional reference model in each subregion by comparing 3D synthetics with observed data for several earthquakes originating in the crust and underlying subducting slab. Full waveform similarity between data and synthetics over the period range 6 s to 30 s provides a basis for an iterative inversion. The target resolution of the crustal structure is 4 km vertically and 20 km laterally. We use surface wave and body wave measurements from local earthquakes to obtain moment tensors that will be used within our tomographic inversion. Local slab events down to 180 km depth, in additional to pervasive crustal seismicity, should enhance resolution.

Modeling and simulation of a beam emission spectroscopy diagnostic for the ITER prototype neutral beam injector

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barbisan, M., E-mail: marco.barbisan@igi.cnr.it; Zaniol, B.; Pasqualotto, R.

2014-11-15

A test facility for the development of the neutral beam injection system for ITER is under construction at Consorzio RFX. It will host two experiments: SPIDER, a 100 keV H{sup −}/D{sup −} ion RF source, and MITICA, a prototype of the full performance ITER injector (1 MV, 17 MW beam). A set of diagnostics will monitor the operation and allow to optimize the performance of the two prototypes. In particular, beam emission spectroscopy will measure the uniformity and the divergence of the fast particles beam exiting the ion source and travelling through the beam line components. This type of measurementmore » is based on the collection of the H{sub α}/D{sub α} emission resulting from the interaction of the energetic particles with the background gas. A numerical model has been developed to simulate the spectrum of the collected emissions in order to design this diagnostic and to study its performance. The paper describes the model at the base of the simulations and presents the modeled H{sub α} spectra in the case of MITICA experiment.« less

Thermal release of D2 from new Be-D co-deposits on previously baked co-deposits

NASA Astrophysics Data System (ADS)

Baldwin, M. J.; Doerner, R. P.

2015-12-01

Past experiments and modeling with the TMAP code in [1, 2] indicated that Be-D co-deposited layers are less (time-wise) efficiently desorbed of retained D in a fixed low-temperature bake, as the layer grows in thickness. In ITER, beryllium rich co-deposited layers will grow in thickness over the life of the machine. Although, compared with the analyses in [1, 2], ITER presents a slightly different bake efficiency problem because of instances of prior tritium recover/control baking. More relevant to ITER, is the thermal release from a new and saturated co-deposit layer in contact with a thickness of previously-baked, less-saturated, co-deposit. Experiments that examine the desorption of saturated co-deposited over-layers in contact with previously baked under-layers are reported and comparison is made to layers of the same combined thickness. Deposition temperatures of ∼323 K and ∼373 K are explored. It is found that an instance of prior bake leads to a subtle effect on the under-layer. The effect causes the thermal desorption of the new saturated over-layer to deviate from the prediction of the validated TMAP model in [2]. Instead of the D thermal release reflecting the combined thickness and levels of D saturation in the over and under layer, experiment differs in that, i) the desorption is a fractional superposition of desorption from the saturated over-layer, with ii) that of the combined over and under -layer thickness. The result is not easily modeled by TMAP without the incorporation of a thin BeO inter-layer which is confirmed experimentally on baked Be-D co-deposits using X-ray micro-analysis.

Construction of robust dynamic genome-scale metabolic model structures of Saccharomyces cerevisiae through iterative re-parameterization.

PubMed

Sánchez, Benjamín J; Pérez-Correa, José R; Agosin, Eduardo

2014-09-01

Dynamic flux balance analysis (dFBA) has been widely employed in metabolic engineering to predict the effect of genetic modifications and environmental conditions in the cell׳s metabolism during dynamic cultures. However, the importance of the model parameters used in these methodologies has not been properly addressed. Here, we present a novel and simple procedure to identify dFBA parameters that are relevant for model calibration. The procedure uses metaheuristic optimization and pre/post-regression diagnostics, fixing iteratively the model parameters that do not have a significant role. We evaluated this protocol in a Saccharomyces cerevisiae dFBA framework calibrated for aerobic fed-batch and anaerobic batch cultivations. The model structures achieved have only significant, sensitive and uncorrelated parameters and are able to calibrate different experimental data. We show that consumption, suboptimal growth and production rates are more useful for calibrating dynamic S. cerevisiae metabolic models than Boolean gene expression rules, biomass requirements and ATP maintenance. Copyright © 2014 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Validation of a method for in vivo 3D dose reconstruction for IMRT and VMAT treatments using on-treatment EPID images and a model-based forward-calculation algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Uytven, Eric, E-mail: eric.vanuytven@cancercare.mb.ca; Van Beek, Timothy; McCowan, Peter M.

2015-12-15

Purpose: Radiation treatments are trending toward delivering higher doses per fraction under stereotactic radiosurgery and hypofractionated treatment regimens. There is a need for accurate 3D in vivo patient dose verification using electronic portal imaging device (EPID) measurements. This work presents a model-based technique to compute full three-dimensional patient dose reconstructed from on-treatment EPID portal images (i.e., transmission images). Methods: EPID dose is converted to incident fluence entering the patient using a series of steps which include converting measured EPID dose to fluence at the detector plane and then back-projecting the primary source component of the EPID fluence upstream of themore » patient. Incident fluence is then recombined with predicted extra-focal fluence and used to calculate 3D patient dose via a collapsed-cone convolution method. This method is implemented in an iterative manner, although in practice it provides accurate results in a single iteration. The robustness of the dose reconstruction technique is demonstrated with several simple slab phantom and nine anthropomorphic phantom cases. Prostate, head and neck, and lung treatments are all included as well as a range of delivery techniques including VMAT and dynamic intensity modulated radiation therapy (IMRT). Results: Results indicate that the patient dose reconstruction algorithm compares well with treatment planning system computed doses for controlled test situations. For simple phantom and square field tests, agreement was excellent with a 2%/2 mm 3D chi pass rate ≥98.9%. On anthropomorphic phantoms, the 2%/2 mm 3D chi pass rates ranged from 79.9% to 99.9% in the planning target volume (PTV) region and 96.5% to 100% in the low dose region (>20% of prescription, excluding PTV and skin build-up region). Conclusions: An algorithm to reconstruct delivered patient 3D doses from EPID exit dosimetry measurements was presented. The method was applied to phantom and patient data sets, as well as for dynamic IMRT and VMAT delivery techniques. Results indicate that the EPID dose reconstruction algorithm presented in this work is suitable for clinical implementation.« less

An improved 3D MoF method based on analytical partial derivatives

NASA Astrophysics Data System (ADS)

Chen, Xiang; Zhang, Xiong

2016-12-01

MoF (Moment of Fluid) method is one of the most accurate approaches among various surface reconstruction algorithms. As other second order methods, MoF method needs to solve an implicit optimization problem to obtain the optimal approximate surface. Therefore, the partial derivatives of the objective function have to be involved during the iteration for efficiency and accuracy. However, to the best of our knowledge, the derivatives are currently estimated numerically by finite difference approximation because it is very difficult to obtain the analytical derivatives of the object function for an implicit optimization problem. Employing numerical derivatives in an iteration not only increase the computational cost, but also deteriorate the convergence rate and robustness of the iteration due to their numerical error. In this paper, the analytical first order partial derivatives of the objective function are deduced for 3D problems. The analytical derivatives can be calculated accurately, so they are incorporated into the MoF method to improve its accuracy, efficiency and robustness. Numerical studies show that by using the analytical derivatives the iterations are converged in all mixed cells with the efficiency improvement of 3 to 4 times.

Versatile fusion source integrator AFSI for fast ion and neutron studies in fusion devices

NASA Astrophysics Data System (ADS)

Sirén, Paula; Varje, Jari; Äkäslompolo, Simppa; Asunta, Otto; Giroud, Carine; Kurki-Suonio, Taina; Weisen, Henri; JET Contributors, The

2018-01-01

ASCOT Fusion Source Integrator AFSI, an efficient tool for calculating fusion reaction rates and characterizing the fusion products, based on arbitrary reactant distributions, has been developed and is reported in this paper. Calculation of reactor-relevant D-D, D-T and D-3He fusion reactions has been implemented based on the Bosch-Hale fusion cross sections. The reactions can be calculated between arbitrary particle populations, including Maxwellian thermal particles and minority energetic particles. Reaction rate profiles, energy spectra and full 4D phase space distributions can be calculated for the non-isotropic reaction products. The code is especially suitable for integrated modelling in self-consistent plasma physics simulations as well as in the Serpent neutronics calculation chain. Validation of the model has been performed for neutron measurements at the JET tokamak and the code has been applied to predictive simulations in ITER.

Helium experiments on Alcator C-Mod in support of ITER early operations

DOE PAGES

Kessel, C. E.; Wolfe, S. M.; Reinke, M. L.; ...

2018-03-13

Helium majority experiments on Alcator C-Mod were performed to compare with deuterium discharges, and inform ITER early operations. ELMy H-modes were produced with a special plasma shape at B T = 5.3 T, I P = 0.9 MA, at q 95 ~ 3.8. The He fraction ranged over, n He,L/n L = 0.2–0.4, with n D,L/n L = 0.15–0.26, compared to D plasmas with n D,L/n L = 0.85–0.97. The power to enter the H-mode in He was found to be greater than ~2 times that for D discharges, in the low density region <1.4 × 10 20/m 3. However, it appears to follow the D threshold for higher densities. The stored energies in the He discharges were about 80% of those in D, and about 40% higher net power was required to sustain them compared to D. Global particle confinement times for tungsten ofmore » $$\\tau _{{\\rm W}}^{{\\rm *}}$$ /τ E ~ 4 were obtained with ELMy H-modes in He, however accumulation occurred when the ELMs were irregular and infrequent. The electron temperatures and densities in the pedestal were similar between D and He discharges, and the ΔT e/T e and Δn e/n e values were similar or larger in He than D. The higher net power required to access the H-mode, and sustain it in flattop, for He discharges in C-Mod, imply some limitations for He operation in ITER.« less

Helium experiments on Alcator C-Mod in support of ITER early operations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kessel, C. E.; Wolfe, S. M.; Reinke, M. L.

Helium majority experiments on Alcator C-Mod were performed to compare with deuterium discharges, and inform ITER early operations. ELMy H-modes were produced with a special plasma shape at B T = 5.3 T, I P = 0.9 MA, at q 95 ~ 3.8. The He fraction ranged over, n He,L/n L = 0.2–0.4, with n D,L/n L = 0.15–0.26, compared to D plasmas with n D,L/n L = 0.85–0.97. The power to enter the H-mode in He was found to be greater than ~2 times that for D discharges, in the low density region <1.4 × 10 20/m 3. However, it appears to follow the D threshold for higher densities. The stored energies in the He discharges were about 80% of those in D, and about 40% higher net power was required to sustain them compared to D. Global particle confinement times for tungsten ofmore » $$\\tau _{{\\rm W}}^{{\\rm *}}$$ /τ E ~ 4 were obtained with ELMy H-modes in He, however accumulation occurred when the ELMs were irregular and infrequent. The electron temperatures and densities in the pedestal were similar between D and He discharges, and the ΔT e/T e and Δn e/n e values were similar or larger in He than D. The higher net power required to access the H-mode, and sustain it in flattop, for He discharges in C-Mod, imply some limitations for He operation in ITER.« less

Iterative Reconstruction of Volumetric Particle Distribution for 3D Velocimetry

NASA Astrophysics Data System (ADS)

Wieneke, Bernhard; Neal, Douglas

2011-11-01

A number of different volumetric flow measurement techniques exist for following the motion of illuminated particles. For experiments that have lower seeding densities, 3D-PTV uses recorded images from typically 3-4 cameras and then tracks the individual particles in space and time. This technique is effective in flows that have lower seeding densities. For flows that have a higher seeding density, tomographic PIV uses a tomographic reconstruction algorithm (e.g. MART) to reconstruct voxel intensities of the recorded volume followed by the cross-correlation of subvolumes to provide the instantaneous 3D vector fields on a regular grid. A new hybrid algorithm is presented which iteratively reconstructs the 3D-particle distribution directly using particles with certain imaging properties instead of voxels as base functions. It is shown with synthetic data that this method is capable of reconstructing densely seeded flows up to 0.05 particles per pixel (ppp) with the same or higher accuracy than 3D-PTV and tomographic PIV. Finally, this new method is validated using experimental data on a turbulent jet.

Highly undersampled contrast-enhanced MRA with iterative reconstruction: Integration in a clinical setting.

PubMed

Stalder, Aurelien F; Schmidt, Michaela; Quick, Harald H; Schlamann, Marc; Maderwald, Stefan; Schmitt, Peter; Wang, Qiu; Nadar, Mariappan S; Zenge, Michael O

2015-12-01

To integrate, optimize, and evaluate a three-dimensional (3D) contrast-enhanced sparse MRA technique with iterative reconstruction on a standard clinical MR system. Data were acquired using a highly undersampled Cartesian spiral phyllotaxis sampling pattern and reconstructed directly on the MR system with an iterative SENSE technique. Undersampling, regularization, and number of iterations of the reconstruction were optimized and validated based on phantom experiments and patient data. Sparse MRA of the whole head (field of view: 265 × 232 × 179 mm(3) ) was investigated in 10 patient examinations. High-quality images with 30-fold undersampling, resulting in 0.7 mm isotropic resolution within 10 s acquisition, were obtained. After optimization of the regularization factor and of the number of iterations of the reconstruction, it was possible to reconstruct images with excellent quality within six minutes per 3D volume. Initial results of sparse contrast-enhanced MRA (CEMRA) in 10 patients demonstrated high-quality whole-head first-pass MRA for both the arterial and venous contrast phases. While sparse MRI techniques have not yet reached clinical routine, this study demonstrates the technical feasibility of high-quality sparse CEMRA of the whole head in a clinical setting. Sparse CEMRA has the potential to become a viable alternative where conventional CEMRA is too slow or does not provide sufficient spatial resolution. © 2014 Wiley Periodicals, Inc.

Design of 4D x-ray tomography experiments for reconstruction using regularized iterative algorithms

NASA Astrophysics Data System (ADS)

Mohan, K. Aditya

2017-10-01

4D X-ray computed tomography (4D-XCT) is widely used to perform non-destructive characterization of time varying physical processes in various materials. The conventional approach to improving temporal resolution in 4D-XCT involves the development of expensive and complex instrumentation that acquire data faster with reduced noise. It is customary to acquire data with many tomographic views at a high signal to noise ratio. Instead, temporal resolution can be improved using regularized iterative algorithms that are less sensitive to noise and limited views. These algorithms benefit from optimization of other parameters such as the view sampling strategy while improving temporal resolution by reducing the total number of views or the detector exposure time. This paper presents the design principles of 4D-XCT experiments when using regularized iterative algorithms derived using the framework of model-based reconstruction. A strategy for performing 4D-XCT experiments is presented that allows for improving the temporal resolution by progressively reducing the number of views or the detector exposure time. Theoretical analysis of the effect of the data acquisition parameters on the detector signal to noise ratio, spatial reconstruction resolution, and temporal reconstruction resolution is also presented in this paper.

A new back-and-forth iterative method for time-reversed convection modeling: Implications for the Cenozoic evolution of 3-D structure and dynamics of the mantle

NASA Astrophysics Data System (ADS)

Glišović, Petar; Forte, Alessandro M.

2016-06-01

The 3-D distribution of buoyancy in the convecting mantle drives a suite of convection-related manifestations. Although seismic tomography is providing increasingly resolved images of the present-day mantle heterogeneity, the distribution of mantle density variations in the geological past is unknown, and, by implication, this is true for the convection-related observables. The one major exception is tectonic plate motions, since geologic data are available to estimate their history and they currently provide the only available constraints on the evolution of 3-D mantle buoyancy in the past. We developed a new back-and-forth iterative method for time-reversed convection modeling with a procedure for matching plate velocity data at different instants in the past. The crucial aspect of this reconstruction methodology is to ensure that at all times plates are driven by buoyancy forces in the mantle and not vice versa. Employing tomography-based retrodictions over the Cenozoic, we estimate the global amplitude of the following observables: dynamic surface topography, the core-mantle boundary ellipticity, the free-air gravity anomalies, and the global divergence rates of tectonic plates. One of the major benefits of the new data assimilation method is the stable recovery of much shorter wavelength changes in heterogeneity than was possible in our previous work. We now resolve what appears to be two-stage subduction of the Farallon plate under the western U.S. and a deeply rooted East African Plume that is active under the Ethiopian volcanic fields during the Early Eocene.

Camera calibration based on the back projection process

NASA Astrophysics Data System (ADS)

Gu, Feifei; Zhao, Hong; Ma, Yueyang; Bu, Penghui

2015-12-01

Camera calibration plays a crucial role in 3D measurement tasks of machine vision. In typical calibration processes, camera parameters are iteratively optimized in the forward imaging process (FIP). However, the results can only guarantee the minimum of 2D projection errors on the image plane, but not the minimum of 3D reconstruction errors. In this paper, we propose a universal method for camera calibration, which uses the back projection process (BPP). In our method, a forward projection model is used to obtain initial intrinsic and extrinsic parameters with a popular planar checkerboard pattern. Then, the extracted image points are projected back into 3D space and compared with the ideal point coordinates. Finally, the estimation of the camera parameters is refined by a non-linear function minimization process. The proposed method can obtain a more accurate calibration result, which is more physically useful. Simulation and practical data are given to demonstrate the accuracy of the proposed method.

A quasi-dense matching approach and its calibration application with Internet photos.

PubMed

Wan, Yanli; Miao, Zhenjiang; Wu, Q M Jonathan; Wang, Xifu; Tang, Zhen; Wang, Zhifei

2015-03-01

This paper proposes a quasi-dense matching approach to the automatic acquisition of camera parameters, which is required for recovering 3-D information from 2-D images. An affine transformation-based optimization model and a new matching cost function are used to acquire quasi-dense correspondences with high accuracy in each pair of views. These correspondences can be effectively detected and tracked at the sub-pixel level in multiviews with our neighboring view selection strategy. A two-layer iteration algorithm is proposed to optimize 3-D quasi-dense points and camera parameters. In the inner layer, different optimization strategies based on local photometric consistency and a global objective function are employed to optimize the 3-D quasi-dense points and camera parameters, respectively. In the outer layer, quasi-dense correspondences are resampled to guide a new estimation and optimization process of the camera parameters. We demonstrate the effectiveness of our algorithm with several experiments.

Material migration studies with an ITER first wall panel proxy on EAST

DOE PAGES

Ding, R.; Pitts, R. A.; Borodin, D.; ...

2015-01-23

The ITER beryllium (Be) first wall (FW) panels are shaped to protect leading edges between neighbouring panels arising from assembly tolerances. This departure from a perfectly cylindrical surface automatically leads to magnetically shadowed regions where eroded Be can be re-deposited, together with co-deposition of tritium fuel. To provide a benchmark for a series of erosion/re-deposition simulation studies performed for the ITER FW panels, dedicated experiments have been performed on the EAST tokamak using a specially designed, instrumented test limiter acting as a proxy for the FW panel geometry. Carbon coated molybdenum plates forming the limiter front surface were exposed tomore » the outer midplane boundary plasma of helium discharges using the new Material and Plasma Evaluation System (MAPES). Net erosion and deposition patterns are estimated using ion beam analysis to measure the carbon layer thickness variation across the surface after exposure. The highest erosion of about 0.8 µm is found near the midplane, where the surface is closest to the plasma separatrix. No net deposition above the measurement detection limit was found on the proxy wall element, even in shadowed regions. The measured 2D surface erosion distribution has been modelled with the 3D Monte Carlo code ERO, using the local plasma parameter measurements together with a diffusive transport assumption. In conclusion, excellent agreement between the experimentally observed net erosion and the modelled erosion profile has been obtained.« less

A non-iterative twin image elimination method with two in-line digital holograms

NASA Astrophysics Data System (ADS)

Kim, Jongwu; Lee, Heejung; Jeon, Philjun; Kim, Dug Young

2018-02-01

We propose a simple non-iterative in-line holographic measurement method which can effectively eliminate a twin image in digital holographic 3D imaging. It is shown that a twin image can be effectively eliminated with only two measured holograms by using a simple numerical propagation algorithm and arithmetic calculations.

Statistical iterative reconstruction to improve image quality for digital breast tomosynthesis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Shiyu, E-mail: shiyu.xu@gmail.com; Chen, Ying, E-mail: adachen@siu.edu; Lu, Jianping

2015-09-15

Purpose: Digital breast tomosynthesis (DBT) is a novel modality with the potential to improve early detection of breast cancer by providing three-dimensional (3D) imaging with a low radiation dose. 3D image reconstruction presents some challenges: cone-beam and flat-panel geometry, and highly incomplete sampling. A promising means to overcome these challenges is statistical iterative reconstruction (IR), since it provides the flexibility of accurate physics modeling and a general description of system geometry. The authors’ goal was to develop techniques for applying statistical IR to tomosynthesis imaging data. Methods: These techniques include the following: a physics model with a local voxel-pair basedmore » prior with flexible parameters to fine-tune image quality; a precomputed parameter λ in the prior, to remove data dependence and to achieve a uniform resolution property; an effective ray-driven technique to compute the forward and backprojection; and an oversampled, ray-driven method to perform high resolution reconstruction with a practical region-of-interest technique. To assess the performance of these techniques, the authors acquired phantom data on the stationary DBT prototype system. To solve the estimation problem, the authors proposed an optimization-transfer based algorithm framework that potentially allows fewer iterations to achieve an acceptably converged reconstruction. Results: IR improved the detectability of low-contrast and small microcalcifications, reduced cross-plane artifacts, improved spatial resolution, and lowered noise in reconstructed images. Conclusions: Although the computational load remains a significant challenge for practical development, the superior image quality provided by statistical IR, combined with advancing computational techniques, may bring benefits to screening, diagnostics, and intraoperative imaging in clinical applications.« less

DiMES PMI research at DIII-D in support of ITER and beyond

DOE PAGES

Rudakov, Dimitry L.; Abrams, Tyler; Ding, Rui; ...

2017-03-27

An overview of recent Plasma-Material Interactions (PMI) research at the DIII-D tokamak using the Divertor Material Evaluation System (DiMES) is presented. The DiMES manipulator allows for exposure of material samples in the lower divertor of DIII-D under well-diagnosed ITER-relevant plasma conditions. Plasma parameters during the exposures are characterized by an extensive diagnostic suite including a number of spectroscopic diagnostics, Langmuir probes, IR imaging, and Divertor Thomson Scattering. Post-mortem measurements of net erosion/deposition on the samples are done by Ion Beam Analysis, and results are modelled by the ERO and REDEP/WBC codes with plasma background reproduced by OEDGE/DIVIMP modelling based onmore » experimental inputs. This article highlights experiments studying sputtering erosion, re-deposition and migration of high-Z elements, mostly tungsten and molybdenum, as well as some alternative materials. Results are generally encouraging for use of high-Z PFCs in ITER and beyond, showing high redeposition and reduced net sputter erosion. Two methods of high-Z PFC surface erosion control, with (i) external electrical biasing and (ii) local gas injection, are also discussed. Furthermore, these techniques may find applications in the future devices.« less

Integrated modelling of steady-state scenarios and heating and current drive mixes for ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murakami, Masanori; Park, Jin Myung; Giruzzi, G.

2011-01-01

Recent progress on ITER steady-state (SS) scenario modelling by the ITPA-IOS group is reviewed. Code-to-code benchmarks as the IOS group's common activities for the two SS scenarios (weak shear scenario and internal transport barrier scenario) are discussed in terms of transport, kinetic profiles, and heating and current drive (CD) sources using various transport codes. Weak magnetic shear scenarios integrate the plasma core and edge by combining a theory-based transport model (GLF23) with scaled experimental boundary profiles. The edge profiles (at normalized radius rho = 0.8-1.0) are adopted from an edge-localized mode-averaged analysis of a DIII-D ITER demonstration discharge. A fullymore » noninductive SS scenario is achieved with fusion gain Q = 4.3, noninductive fraction f(NI) = 100%, bootstrap current fraction f(BS) = 63% and normalized beta beta(N) = 2.7 at plasma current I(p) = 8MA and toroidal field B(T) = 5.3 T using ITER day-1 heating and CD capability. Substantial uncertainties come from outside the radius of setting the boundary conditions (rho = 0.8). The present simulation assumed that beta(N)(rho) at the top of the pedestal (rho = 0.91) is about 25% above the peeling-ballooning threshold. ITER will have a challenge to achieve the boundary, considering different operating conditions (T(e)/T(i) approximate to 1 and density peaking). Overall, the experimentally scaled edge is an optimistic side of the prediction. A number of SS scenarios with different heating and CD mixes in a wide range of conditions were explored by exploiting the weak-shear steady-state solution procedure with the GLF23 transport model and the scaled experimental edge. The results are also presented in the operation space for DT neutron power versus stationary burn pulse duration with assumed poloidal flux availability at the beginning of stationary burn, indicating that the long pulse operation goal (3000s) at I(p) = 9 MA is possible. Source calculations in these simulations have been revised for electron cyclotron current drive including parallel momentum conservation effects and for neutral beam current drive with finite orbit and magnetic pitch effects.« less

Long-pulse stability limits of the ITER baseline scenario

DOE PAGES

Jackson, G. L.; Luce, T. C.; Solomon, W. M.; ...

2015-01-14

DIII-D has made significant progress in developing the techniques required to operate ITER, and in understanding their impact on performance when integrated into operational scenarios at ITER relevant parameters. We demonstrated long duration plasmas, stable to m/n =2/1 tearing modes (TMs), with an ITER similar shape and I p/aB T, in DIII-D, that evolve to stationary conditions. The operating region most likely to reach stable conditions has normalized pressure, B N≈1.9–2.1 (compared to the ITER baseline design of 1.6 – 1.8), and a Greenwald normalized density fraction, f GW 0.42 – 0.70 (the ITER design is f GW ≈ 0.8).more » The evolution of the current profile, using internal inductance (l i) as an indicator, is found to produce a smaller fraction of stable pulses when l i is increased above ≈ 1.1 at the beginning of β N flattop. Stable discharges with co-neutral beam injection (NBI) are generally accompanied with a benign n=2 MHD mode. However if this mode exceeds ≈ 10 G, the onset of a m/n=2/1 tearing mode occurs with a loss of confinement. In addition, stable operation with low applied external torque, at or below the extrapolated value expected for ITER has also been demonstrated. With electron cyclotron (EC) injection, the operating region of stable discharges has been further extended at ITER equivalent levels of torque and to ELM free discharges at higher torque but with the addition of an n=3 magnetic perturbation from the DIII-D internal coil set. Lastly, the characterization of the ITER baseline scenario evolution for long pulse duration, extension to more ITER relevant values of torque and electron heating, and suppression of ELMs have significantly advanced the physics basis of this scenario, although significant effort remains in the simultaneous integration of all these requirements.« less

Computational microscopy: illumination coding and nonlinear optimization enables gigapixel 3D phase imaging

NASA Astrophysics Data System (ADS)

Tian, Lei; Waller, Laura

2017-05-01

Microscope lenses can have either large field of view (FOV) or high resolution, not both. Computational microscopy based on illumination coding circumvents this limit by fusing images from different illumination angles using nonlinear optimization algorithms. The result is a Gigapixel-scale image having both wide FOV and high resolution. We demonstrate an experimentally robust reconstruction algorithm based on a 2nd order quasi-Newton's method, combined with a novel phase initialization scheme. To further extend the Gigapixel imaging capability to 3D, we develop a reconstruction method to process the 4D light field measurements from sequential illumination scanning. The algorithm is based on a 'multislice' forward model that incorporates both 3D phase and diffraction effects, as well as multiple forward scatterings. To solve the inverse problem, an iterative update procedure that combines both phase retrieval and 'error back-propagation' is developed. To avoid local minimum solutions, we further develop a novel physical model-based initialization technique that accounts for both the geometric-optic and 1st order phase effects. The result is robust reconstructions of Gigapixel 3D phase images having both wide FOV and super resolution in all three dimensions. Experimental results from an LED array microscope were demonstrated.

Full-waveform inversion for the Iranian plateau

NASA Astrophysics Data System (ADS)

Masouminia, N.; Fichtner, A.; Rahimi, H.

2017-12-01

We aim to obtain a detailed tomographic model for the Iranian plateau facilitated by full-waveform inversion. By using this method, we intend to better constrain the 3-D structure of the crust and the upper mantle in the region. The Iranian plateau is a complex tectonic area resulting from the collision of the Arabian and Eurasian tectonic plates. This region is subject to complex tectonic processes such as Makran subduction zone, which runs along the southeastern coast of Iran, and the convergence of the Arabian and- Eurasian plates, which itself led to another subduction under Central Iran. This continent-continent collision has also caused shortening and crustal thickening, which can be seen today as Zagros mountain range in the south and Kopeh Dagh mountain range in the northeast. As a result of such a tectonic activity, the crust and the mantle beneath the region are expected to be highly heterogeneous. To further our understanding of the region and its tectonic history, a detailed 3-D velocity model is required.To construct a 3-D model, we propose to use full-waveform inversion, which allows us to incorporate all types of waves recorded in the seismogram, including body waves as well as fundamental- and higher-mode surface waves. Exploiting more information from the observed data using this approach is likely to constrain features which have not been found by classical tomography studies so far. We address the forward problem using Salvus - a numerical wave propagation solver, based on spectral-element method and run on high-performance computers. The solver allows us to simulate wave field propagating in highly heterogeneous, attenuating and anisotropic media, respecting the surface topography. To improve the model, we solve the optimization problem. Solution of this optimization problem is based on an iterative approach which employs adjoint methods to calculate the gradient and uses steepest descent and conjugate-gradient methods to minimize the objective function. Each iteration of such an approach is expected to bring the model closer to the true model.Our model domain extends between 25°N and 40°N in latitude and 42°E and 63°E in longitude. To constrain the 3-D structure of the area we use 83 broadband seismic stations and 146 earthquakes with magnitude Mw>4.5 -that occurred in the region between 2012 and 2017.

Decentralized Control of Sound Radiation from an Aircraft-Style Panel Using Iterative Loop Recovery

NASA Technical Reports Server (NTRS)

Schiller, Noah H.; Cabell, Randolph H.; Fuller, Chris R.

2008-01-01

A decentralized LQG-based control strategy is designed to reduce low-frequency sound transmission through periodically stiffened panels. While modern control strategies have been used to reduce sound radiation from relatively simple structural acoustic systems, significant implementation issues have to be addressed before these control strategies can be extended to large systems such as the fuselage of an aircraft. For instance, centralized approaches typically require a high level of connectivity and are computationally intensive, while decentralized strategies face stability problems caused by the unmodeled interaction between neighboring control units. Since accurate uncertainty bounds are not known a priori, it is difficult to ensure the decentralized control system will be robust without making the controller overly conservative. Therefore an iterative approach is suggested, which utilizes frequency-shaped loop recovery. The approach accounts for modeling error introduced by neighboring control loops, requires no communication between subsystems, and is relatively simple. The control strategy is validated using real-time control experiments performed on a built-up aluminum test structure representative of the fuselage of an aircraft. Experiments demonstrate that the iterative approach is capable of achieving 12 dB peak reductions and a 3.6 dB integrated reduction in radiated sound power from the stiffened panel.

Comparing mass balance and adjoint methods for inverse modeling of nitrogen dioxide columns for global nitrogen oxide emissions

NASA Astrophysics Data System (ADS)

Cooper, Matthew; Martin, Randall V.; Padmanabhan, Akhila; Henze, Daven K.

2017-04-01

Satellite observations offer information applicable to top-down constraints on emission inventories through inverse modeling. Here we compare two methods of inverse modeling for emissions of nitrogen oxides (NOx) from nitrogen dioxide (NO2) columns using the GEOS-Chem chemical transport model and its adjoint. We treat the adjoint-based 4D-Var modeling approach for estimating top-down emissions as a benchmark against which to evaluate variations on the mass balance method. We use synthetic NO2 columns generated from known NOx emissions to serve as "truth." We find that error in mass balance inversions can be reduced by up to a factor of 2 with an iterative process that uses finite difference calculations of the local sensitivity of NO2 columns to a change in emissions. In a simplified experiment to recover local emission perturbations, horizontal smearing effects due to NOx transport are better resolved by the adjoint approach than by mass balance. For more complex emission changes, or at finer resolution, the iterative finite difference mass balance and adjoint methods produce similar global top-down inventories when inverting hourly synthetic observations, both reducing the a priori error by factors of 3-4. Inversions of simulated satellite observations from low Earth and geostationary orbits also indicate that both the mass balance and adjoint inversions produce similar results, reducing a priori error by a factor of 3. As the iterative finite difference mass balance method provides similar accuracy as the adjoint method, it offers the prospect of accurately estimating top-down NOx emissions using models that do not have an adjoint.

Acceleration of MCNP calculations for small pipes configurations by using Weigth Windows Importance cards created by the SN-3D ATTILA

NASA Astrophysics Data System (ADS)

Castanier, Eric; Paterne, Loic; Louis, Céline

2017-09-01

In the nuclear engineering, you have to manage time and precision. Especially in shielding design, you have to be more accurate and efficient to reduce cost (shielding thickness optimization), and for this, you use 3D codes. In this paper, we want to see if we can easily applicate the CADIS methods for design shielding of small pipes which go through large concrete walls. We assess the impact of the WW generated by the 3D-deterministic code ATTILA versus WW directly generated by MCNP (iterative and manual process). The comparison is based on the quality of the convergence (estimated relative error (σ), Variance of Variance (VOV) and Figure of Merit (FOM)), on time (computer time + modelling) and on the implement for the engineer.

Dynamic tracking of prosthetic valve motion and deformation from bi-plane x-ray views: feasibility study

NASA Astrophysics Data System (ADS)

Hatt, Charles R.; Wagner, Martin; Raval, Amish N.; Speidel, Michael A.

2016-03-01

Transcatheter aortic valve replacement (TAVR) requires navigation and deployment of a prosthetic valve within the aortic annulus under fluoroscopic guidance. To support improved device visualization in this procedure, this study investigates the feasibility of frame-by-frame 3D reconstruction of a moving and expanding prosthetic valve structure from simultaneous bi-plane x-ray views. In the proposed method, a dynamic 3D model of the valve is used in a 2D/3D registration framework to obtain a reconstruction of the valve. For each frame, valve model parameters describing position, orientation, expansion state, and deformation are iteratively adjusted until forward projections of the model match both bi-plane views. Simulated bi-plane imaging of a valve at different signal-difference-to-noise ratio (SDNR) levels was performed to test the approach. 20 image sequences with 50 frames of valve deployment were simulated at each SDNR. The simulation achieved a target registration error (TRE) of the estimated valve model of 0.93 +/- 2.6 mm (mean +/- S.D.) for the lowest SDNR of 2. For higher SDNRs (5 to 50) a TRE of 0.04 mm +/- 0.23 mm was achieved. A tabletop phantom study was then conducted using a TAVR valve. The dynamic 3D model was constructed from high resolution CT scans and a simple expansion model. TRE was 1.22 +/- 0.35 mm for expansion states varying from undeployed to fully deployed, and for moderate amounts of inter-frame motion. Results indicate that it is feasible to use bi-plane imaging to recover the 3D structure of deformable catheter devices.

Dynamic tracking of prosthetic valve motion and deformation from bi-plane x-ray views: feasibility study.

PubMed

Hatt, Charles R; Wagner, Martin; Raval, Amish N; Speidel, Michael A

2016-01-01

Transcatheter aortic valve replacement (TAVR) requires navigation and deployment of a prosthetic valve within the aortic annulus under fluoroscopic guidance. To support improved device visualization in this procedure, this study investigates the feasibility of frame-by-frame 3D reconstruction of a moving and expanding prosthetic valve structure from simultaneous bi-plane x-ray views. In the proposed method, a dynamic 3D model of the valve is used in a 2D/3D registration framework to obtain a reconstruction of the valve. For each frame, valve model parameters describing position, orientation, expansion state, and deformation are iteratively adjusted until forward projections of the model match both bi-plane views. Simulated bi-plane imaging of a valve at different signal-difference-to-noise ratio (SDNR) levels was performed to test the approach. 20 image sequences with 50 frames of valve deployment were simulated at each SDNR. The simulation achieved a target registration error (TRE) of the estimated valve model of 0.93 ± 2.6 mm (mean ± S.D.) for the lowest SDNR of 2. For higher SDNRs (5 to 50) a TRE of 0.04 mm ± 0.23 mm was achieved. A tabletop phantom study was then conducted using a TAVR valve. The dynamic 3D model was constructed from high resolution CT scans and a simple expansion model. TRE was 1.22 ± 0.35 mm for expansion states varying from undeployed to fully deployed, and for moderate amounts of inter-frame motion. Results indicate that it is feasible to use bi-plane imaging to recover the 3D structure of deformable catheter devices.

Comparison of a 3-D GPU-Assisted Maxwell Code and Ray Tracing for Reflectometry on ITER

NASA Astrophysics Data System (ADS)

Gady, Sarah; Kubota, Shigeyuki; Johnson, Irena

2015-11-01

Electromagnetic wave propagation and scattering in magnetized plasmas are important diagnostics for high temperature plasmas. 1-D and 2-D full-wave codes are standard tools for measurements of the electron density profile and fluctuations; however, ray tracing results have shown that beam propagation in tokamak plasmas is inherently a 3-D problem. The GPU-Assisted Maxwell Code utilizes the FDTD (Finite-Difference Time-Domain) method for solving the Maxwell equations with the cold plasma approximation in a 3-D geometry. Parallel processing with GPGPU (General-Purpose computing on Graphics Processing Units) is used to accelerate the computation. Previously, we reported on initial comparisons of the code results to 1-D numerical and analytical solutions, where the size of the computational grid was limited by the on-board memory of the GPU. In the current study, this limitation is overcome by using domain decomposition and an additional GPU. As a practical application, this code is used to study the current design of the ITER Low Field Side Reflectometer (LSFR) for the Equatorial Port Plug 11 (EPP11). A detailed examination of Gaussian beam propagation in the ITER edge plasma will be presented, as well as comparisons with ray tracing. This work was made possible by funding from the Department of Energy for the Summer Undergraduate Laboratory Internship (SULI) program. This work is supported by the US DOE Contract No.DE-AC02-09CH11466 and DE-FG02-99-ER54527.

Development of a spatially resolving x-ray crystal spectrometer for measurement of ion-temperature (T(i)) and rotation-velocity (v) profiles in ITER.

PubMed

Hill, K W; Bitter, M; Delgado-Aparicio, L; Johnson, D; Feder, R; Beiersdorfer, P; Dunn, J; Morris, K; Wang, E; Reinke, M; Podpaly, Y; Rice, J E; Barnsley, R; O'Mullane, M; Lee, S G

2010-10-01

Imaging x-ray crystal spectrometer (XCS) arrays are being developed as a US-ITER activity for Doppler measurement of T(i) and v profiles of impurities (W, Kr, and Fe) with ∼7 cm (a/30) and 10-100 ms resolution in ITER. The imaging XCS, modeled after a prototype instrument on Alcator C-Mod, uses a spherically bent crystal and 2D x-ray detectors to achieve high spectral resolving power (E/dE>6000) horizontally and spatial imaging vertically. Two arrays will measure T(i) and both poloidal and toroidal rotation velocity profiles. The measurement of many spatial chords permits tomographic inversion for the inference of local parameters. The instrument design, predictions of performance, and results from C-Mod are presented.

GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging

DOE PAGES

Pryor, Alan; Yang, Yongsoo; Rana, Arjun; ...

2017-09-05

Tomography has made a radical impact on diverse fields ranging from the study of 3D atomic arrangements in matter to the study of human health in medicine. Despite its very diverse applications, the core of tomography remains the same, that is, a mathematical method must be implemented to reconstruct the 3D structure of an object from a number of 2D projections. Here, we present the mathematical implementation of a tomographic algorithm, termed GENeralized Fourier Iterative REconstruction (GENFIRE), for high-resolution 3D reconstruction from a limited number of 2D projections. GENFIRE first assembles a 3D Fourier grid with oversampling and then iteratesmore » between real and reciprocal space to search for a global solution that is concurrently consistent with the measured data and general physical constraints. The algorithm requires minimal human intervention and also incorporates angular refinement to reduce the tilt angle error. We demonstrate that GENFIRE can produce superior results relative to several other popular tomographic reconstruction techniques through numerical simulations and by experimentally reconstructing the 3D structure of a porous material and a frozen-hydrated marine cyanobacterium. As a result, equipped with a graphical user interface, GENFIRE is freely available from our website and is expected to find broad applications across different disciplines.« less

GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pryor, Alan; Yang, Yongsoo; Rana, Arjun

Tomography has made a radical impact on diverse fields ranging from the study of 3D atomic arrangements in matter to the study of human health in medicine. Despite its very diverse applications, the core of tomography remains the same, that is, a mathematical method must be implemented to reconstruct the 3D structure of an object from a number of 2D projections. Here, we present the mathematical implementation of a tomographic algorithm, termed GENeralized Fourier Iterative REconstruction (GENFIRE), for high-resolution 3D reconstruction from a limited number of 2D projections. GENFIRE first assembles a 3D Fourier grid with oversampling and then iteratesmore » between real and reciprocal space to search for a global solution that is concurrently consistent with the measured data and general physical constraints. The algorithm requires minimal human intervention and also incorporates angular refinement to reduce the tilt angle error. We demonstrate that GENFIRE can produce superior results relative to several other popular tomographic reconstruction techniques through numerical simulations and by experimentally reconstructing the 3D structure of a porous material and a frozen-hydrated marine cyanobacterium. As a result, equipped with a graphical user interface, GENFIRE is freely available from our website and is expected to find broad applications across different disciplines.« less

Computed Tomography Image Quality Evaluation of a New Iterative Reconstruction Algorithm in the Abdomen (Adaptive Statistical Iterative Reconstruction-V) a Comparison With Model-Based Iterative Reconstruction, Adaptive Statistical Iterative Reconstruction, and Filtered Back Projection Reconstructions.

PubMed

Goodenberger, Martin H; Wagner-Bartak, Nicolaus A; Gupta, Shiva; Liu, Xinming; Yap, Ramon Q; Sun, Jia; Tamm, Eric P; Jensen, Corey T

The purpose of this study was to compare abdominopelvic computed tomography images reconstructed with adaptive statistical iterative reconstruction-V (ASIR-V) with model-based iterative reconstruction (Veo 3.0), ASIR, and filtered back projection (FBP). Abdominopelvic computed tomography scans for 36 patients (26 males and 10 females) were reconstructed using FBP, ASIR (80%), Veo 3.0, and ASIR-V (30%, 60%, 90%). Mean ± SD patient age was 32 ± 10 years with mean ± SD body mass index of 26.9 ± 4.4 kg/m. Images were reviewed by 2 independent readers in a blinded, randomized fashion. Hounsfield unit, noise, and contrast-to-noise ratio (CNR) values were calculated for each reconstruction algorithm for further comparison. Phantom evaluation of low-contrast detectability (LCD) and high-contrast resolution was performed. Adaptive statistical iterative reconstruction-V 30%, ASIR-V 60%, and ASIR 80% were generally superior qualitatively compared with ASIR-V 90%, Veo 3.0, and FBP (P < 0.05). Adaptive statistical iterative reconstruction-V 90% showed superior LCD and had the highest CNR in the liver, aorta, and, pancreas, measuring 7.32 ± 3.22, 11.60 ± 4.25, and 4.60 ± 2.31, respectively, compared with the next best series of ASIR-V 60% with respective CNR values of 5.54 ± 2.39, 8.78 ± 3.15, and 3.49 ± 1.77 (P <0.0001). Veo 3.0 and ASIR 80% had the best and worst spatial resolution, respectively. Adaptive statistical iterative reconstruction-V 30% and ASIR-V 60% provided the best combination of qualitative and quantitative performance. Adaptive statistical iterative reconstruction 80% was equivalent qualitatively, but demonstrated inferior spatial resolution and LCD.

Numerical Stress Analysis during Cooldown and Compressive Loading in an Imperfect Nb 3Sn Wire

DOE Office of Scientific and Technical Information (OSTI.GOV)

d’Hauthuille, Luc; Zhai, Yuhu

In this paper, high field superconductors are critical to the success of next step magnetic fusion confinement devices such as ITER and DEMO. The low-temperature superconducting material that is currently favored for these applications, Nb 3Sn, is susceptible to performance due to its brittleness and high strain-sensitivity. Under extreme loads, an irreversible degradation in the maximum critical current density has been shown to occur and believed to be strongly influenced by two factors: plasticity and cracked filaments. Cracks in filaments are induced when sufficiently high stress concentrations occur in the wire. In this paper, we explore using finite element analysismore » the impact that voids have on the stress distributions and peak stresses under two loading conditions: transverse compressive loading in a 2D model, and a full cool down phase in a 3D model.« less

Numerical Stress Analysis during Cooldown and Compressive Loading in an Imperfect Nb 3Sn Wire

DOE PAGES

d’Hauthuille, Luc; Zhai, Yuhu

2017-07-11

In this paper, high field superconductors are critical to the success of next step magnetic fusion confinement devices such as ITER and DEMO. The low-temperature superconducting material that is currently favored for these applications, Nb 3Sn, is susceptible to performance due to its brittleness and high strain-sensitivity. Under extreme loads, an irreversible degradation in the maximum critical current density has been shown to occur and believed to be strongly influenced by two factors: plasticity and cracked filaments. Cracks in filaments are induced when sufficiently high stress concentrations occur in the wire. In this paper, we explore using finite element analysismore » the impact that voids have on the stress distributions and peak stresses under two loading conditions: transverse compressive loading in a 2D model, and a full cool down phase in a 3D model.« less

3D modeling inversion calculation of magnetic data using iterative reweighted least squares at the Lau basin, Southwest Pacific

NASA Astrophysics Data System (ADS)

Choi, S.; Kim, C.; Kim, H. R.; Park, C.; Park, H. Y.

2015-12-01

We performed the marine magnetic and the bathymetry survey in the Lau basin for finding the submarine hydrothermal deposits in October 2009. We acquired magnetic and bathymetry datasets by using Overhouser Proton Magnetometer SeaSPY(Marine Magnetics Co.) and Multi-Beam Echo Sounder EM120(Kongsberg Co.). We conducted the data processing to obtain detailed seabed topography, magnetic anomaly and reduction to the pole(RTP). The Lau basin is one of the youngest back-arc basins in the Southwest Pacific. This region was a lot of hydrothermal activities and hydrothermal deposits. In particular, Tofua Arc(TA) in the Lau basin consists of various and complex stratovolcanos(from Massoth et al., 2007).), We calculated the magnetic susceptibility distribution of the TA19-1 seamount(longitude:176°23.5'W, latitude: 22°42.5'W)area using the RTP data by 3-D magnetic inversion from Jung's previous study(2013). Based on 2D 'compact gravity inversion' by Last & Kubik(1983), we expend it to the 3D algorithm using iterative reweighted least squares method with some weight matrices. The used weight matrices are two types: 1) the minimum gradient support(MGS) that controls the spatial distribution of the solution from Porniaguine and Zhdanov(1999); 2) the depth weight that are used according to the shape of subsurface structures. From the modeling, we derived the appropriate scale factor for the use of depth weight and setting magnetic susceptibility. Furthermore, we have to enter a very small error value to control the computation of the singular point of the inversion model that was able to be easily calculated for modeling. In addition, we applied separately weighted value for the correct shape and depth of the magnetic source. We selected the best results model by change to converge of RMS. Compared between the final modeled result and RTP values in this study, they are generally similar to the each other. But the input values and the modeled values have slightly little difference. This difference is expected to have been caused by various and complex stratovolcanos, misunderstanding of regional geology distribution, modeling design, limited vertical resolution from non-uniqueness in potential field and etc. We can expect to have the better results of advanced modeling design with more geological survey data.

Non-iterative volumetric particle reconstruction near moving bodies

NASA Astrophysics Data System (ADS)

Mendelson, Leah; Techet, Alexandra

2017-11-01

When multi-camera 3D PIV experiments are performed around a moving body, the body often obscures visibility of regions of interest in the flow field in a subset of cameras. We evaluate the performance of non-iterative particle reconstruction algorithms used for synthetic aperture PIV (SAPIV) in these partially-occluded regions. We show that when partial occlusions are present, the quality and availability of 3D tracer particle information depends on the number of cameras and reconstruction procedure used. Based on these findings, we introduce an improved non-iterative reconstruction routine for SAPIV around bodies. The reconstruction procedure combines binary masks, already required for reconstruction of the body's 3D visual hull, and a minimum line-of-sight algorithm. This approach accounts for partial occlusions without performing separate processing for each possible subset of cameras. We combine this reconstruction procedure with three-dimensional imaging on both sides of the free surface to reveal multi-fin wake interactions generated by a jumping archer fish. Sufficient particle reconstruction in near-body regions is crucial to resolving the wake structures of upstream fins (i.e., dorsal and anal fins) before and during interactions with the caudal tail.

Localizing intracavitary brachytherapy applicators from cone-beam CT x-ray projections via a novel iterative forward projection matching algorithm.

PubMed

Pokhrel, Damodar; Murphy, Martin J; Todor, Dorin A; Weiss, Elisabeth; Williamson, Jeffrey F

2011-02-01

To present a novel method for reconstructing the 3D pose (position and orientation) of radio-opaque applicators of known but arbitrary shape from a small set of 2D x-ray projections in support of intraoperative brachytherapy planning. The generalized iterative forward projection matching (gIFPM) algorithm finds the six degree-of-freedom pose of an arbitrary rigid object by minimizing the sum-of-squared-intensity differences (SSQD) between the computed and experimentally acquired autosegmented projection of the objects. Starting with an initial estimate of the object's pose, gIFPM iteratively refines the pose parameters (3D position and three Euler angles) until the SSQD converges. The object, here specialized to a Fletcher-Weeks intracavitary brachytherapy (ICB) applicator, is represented by a fine mesh of discrete points derived from complex combinatorial geometric models of the actual applicators. Three pairs of computed and measured projection images with known imaging geometry are used. Projection images of an intrauterine tandem and colpostats were acquired from an ACUITY cone-beam CT digital simulator. An image postprocessing step was performed to create blurred binary applicators only images. To quantify gIFPM accuracy, the reconstructed 3D pose of the applicator model was forward projected and overlaid with the measured images and empirically calculated the nearest-neighbor applicator positional difference for each image pair. In the numerical simulations, the tandem and colpostats positions (x,y,z) and orientations (alpha, beta, gamma) were estimated with accuracies of 0.6 mm and 2 degrees, respectively. For experimentally acquired images of actual applicators, the residual 2D registration error was less than 1.8 mm for each image pair, corresponding to about 1 mm positioning accuracy at isocenter, with a total computation time of less than 1.5 min on a 1 GHz processor. This work describes a novel, accurate, fast, and completely automatic method to localize radio-opaque applicators of arbitrary shape from measured 2D x-ray projections. The results demonstrate approximately 1 mm accuracy while compared against the measured applicator projections. No lateral film is needed. By localizing the applicator internal structure as well as radioactive sources, the effect of intra-applicator and interapplicator attenuation can be included in the resultant dose calculations. Further validation tests using clinically acquired tandem and colpostats images will be performed for the accurate and robust applicator/sources localization in ICB patients.

Localizing intracavitary brachytherapy applicators from cone-beam CT x-ray projections via a novel iterative forward projection matching algorithm

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pokhrel, Damodar; Murphy, Martin J.; Todor, Dorin A.

2011-02-15

Purpose: To present a novel method for reconstructing the 3D pose (position and orientation) of radio-opaque applicators of known but arbitrary shape from a small set of 2D x-ray projections in support of intraoperative brachytherapy planning. Methods: The generalized iterative forward projection matching (gIFPM) algorithm finds the six degree-of-freedom pose of an arbitrary rigid object by minimizing the sum-of-squared-intensity differences (SSQD) between the computed and experimentally acquired autosegmented projection of the objects. Starting with an initial estimate of the object's pose, gIFPM iteratively refines the pose parameters (3D position and three Euler angles) until the SSQD converges. The object, heremore » specialized to a Fletcher-Weeks intracavitary brachytherapy (ICB) applicator, is represented by a fine mesh of discrete points derived from complex combinatorial geometric models of the actual applicators. Three pairs of computed and measured projection images with known imaging geometry are used. Projection images of an intrauterine tandem and colpostats were acquired from an ACUITY cone-beam CT digital simulator. An image postprocessing step was performed to create blurred binary applicators only images. To quantify gIFPM accuracy, the reconstructed 3D pose of the applicator model was forward projected and overlaid with the measured images and empirically calculated the nearest-neighbor applicator positional difference for each image pair. Results: In the numerical simulations, the tandem and colpostats positions (x,y,z) and orientations ({alpha},{beta},{gamma}) were estimated with accuracies of 0.6 mm and 2 deg., respectively. For experimentally acquired images of actual applicators, the residual 2D registration error was less than 1.8 mm for each image pair, corresponding to about 1 mm positioning accuracy at isocenter, with a total computation time of less than 1.5 min on a 1 GHz processor. Conclusions: This work describes a novel, accurate, fast, and completely automatic method to localize radio-opaque applicators of arbitrary shape from measured 2D x-ray projections. The results demonstrate {approx}1 mm accuracy while compared against the measured applicator projections. No lateral film is needed. By localizing the applicator internal structure as well as radioactive sources, the effect of intra-applicator and interapplicator attenuation can be included in the resultant dose calculations. Further validation tests using clinically acquired tandem and colpostats images will be performed for the accurate and robust applicator/sources localization in ICB patients.« less

Noise tolerant illumination optimization applied to display devices

NASA Astrophysics Data System (ADS)

Cassarly, William J.; Irving, Bruce

2005-02-01

Display devices have historically been designed through an iterative process using numerous hardware prototypes. This process is effective but the number of iterations is limited by the time and cost to make the prototypes. In recent years, virtual prototyping using illumination software modeling tools has replaced many of the hardware prototypes. Typically, the designer specifies the design parameters, builds the software model, predicts the performance using a Monte Carlo simulation, and uses the performance results to repeat this process until an acceptable design is obtained. What is highly desired, and now possible, is to use illumination optimization to automate the design process. Illumination optimization provides the ability to explore a wider range of design options while also providing improved performance. Since Monte Carlo simulations are often used to calculate the system performance but those predictions have statistical uncertainty, the use of noise tolerant optimization algorithms is important. The use of noise tolerant illumination optimization is demonstrated by considering display device designs that extract light using 2D paint patterns as well as 3D textured surfaces. A hybrid optimization approach that combines a mesh feedback optimization with a classical optimizer is demonstrated. Displays with LED sources and cold cathode fluorescent lamps are considered.

Self-consistent one dimension in space and three dimension in velocity kinetic trajectory simulation model of magnetized plasma-wall transition

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chalise, Roshan, E-mail: plasma.roshan@gmail.com; Khanal, Raju

2015-11-15

We have developed a self-consistent 1d3v (one dimension in space and three dimension in velocity) Kinetic Trajectory Simulation (KTS) model, which can be used for modeling various situations of interest and yields results of high accuracy. Exact ion trajectories are followed, to calculate along them the ion distribution function, assuming an arbitrary injection ion distribution. The electrons, on the other hand, are assumed to have a cut-off Maxwellian velocity distribution at injection and their density distribution is obtained analytically. Starting from an initial guess, the potential profile is iterated towards the final time-independent self-consistent state. We have used it tomore » study plasma sheath region formed in presence of an oblique magnetic field. Our results agree well with previous works from other models, and hence, we expect our 1d3v KTS model to provide a basis for the studying of all types of magnetized plasmas, yielding more accurate results.« less

Coupled Modeling of Hydrodynamics and Sound in Coastal Ocean for Renewable Ocean Energy Development

DOE Office of Scientific and Technical Information (OSTI.GOV)

Long, Wen; Jung, Ki Won; Yang, Zhaoqing

An underwater sound model was developed to simulate sound propagation from marine and hydrokinetic energy (MHK) devices or offshore wind (OSW) energy platforms. Finite difference methods were developed to solve the 3D Helmholtz equation for sound propagation in the coastal environment. A 3D sparse matrix solver with complex coefficients was formed for solving the resulting acoustic pressure field. The Complex Shifted Laplacian Preconditioner (CSLP) method was applied to solve the matrix system iteratively with MPI parallelization using a high performance cluster. The sound model was then coupled with the Finite Volume Community Ocean Model (FVCOM) for simulating sound propagation generatedmore » by human activities, such as construction of OSW turbines or tidal stream turbine operations, in a range-dependent setting. As a proof of concept, initial validation of the solver is presented for two coastal wedge problems. This sound model can be useful for evaluating impacts on marine mammals due to deployment of MHK devices and OSW energy platforms.« less

SketchBio: a scientist's 3D interface for molecular modeling and animation.

PubMed

Waldon, Shawn M; Thompson, Peter M; Hahn, Patrick J; Taylor, Russell M

2014-10-30

Because of the difficulties involved in learning and using 3D modeling and rendering software, many scientists hire programmers or animators to create models and animations. This both slows the discovery process and provides opportunities for miscommunication. Working with multiple collaborators, a tool was developed (based on a set of design goals) to enable them to directly construct models and animations. SketchBio is presented, a tool that incorporates state-of-the-art bimanual interaction and drop shadows to enable rapid construction of molecular structures and animations. It includes three novel features: crystal-by-example, pose-mode physics, and spring-based layout that accelerate operations common in the formation of molecular models. Design decisions and their consequences are presented, including cases where iterative design was required to produce effective approaches. The design decisions, novel features, and inclusion of state-of-the-art techniques enabled SketchBio to meet all of its design goals. These features and decisions can be incorporated into existing and new tools to improve their effectiveness.

Wavelet-based 3-D inversion for frequency-domain airborne EM data

NASA Astrophysics Data System (ADS)

Liu, Yunhe; Farquharson, Colin G.; Yin, Changchun; Baranwal, Vikas C.

2018-04-01

In this paper, we propose a new wavelet-based 3-D inversion method for frequency-domain airborne electromagnetic (FDAEM) data. Instead of inverting the model in the space domain using a smoothing constraint, this new method recovers the model in the wavelet domain based on a sparsity constraint. In the wavelet domain, the model is represented by two types of coefficients, which contain both large- and fine-scale informations of the model, meaning the wavelet-domain inversion has inherent multiresolution. In order to accomplish a sparsity constraint, we minimize an L1-norm measure in the wavelet domain that mostly gives a sparse solution. The final inversion system is solved by an iteratively reweighted least-squares method. We investigate different orders of Daubechies wavelets to accomplish our inversion algorithm, and test them on synthetic frequency-domain AEM data set. The results show that higher order wavelets having larger vanishing moments and regularity can deliver a more stable inversion process and give better local resolution, while the lower order wavelets are simpler and less smooth, and thus capable of recovering sharp discontinuities if the model is simple. At last, we test this new inversion algorithm on a frequency-domain helicopter EM (HEM) field data set acquired in Byneset, Norway. Wavelet-based 3-D inversion of HEM data is compared to L2-norm-based 3-D inversion's result to further investigate the features of the new method.

3D micro-crack propagation simulation at enamel/adhesive interface using FE submodeling and element death techniques.

PubMed

Liu, Heng-Liang; Lin, Chun-Li; Sun, Ming-Tsung; Chang, Yen-Hsiang

2010-06-01

This study investigates micro-crack propagation at the enamel/adhesive interface using finite element (FE) submodeling and element death techniques. A three-dimensional (3D) FE macro-model of the enamel/adhesive/ceramic subjected to shear bond testing was generated and analyzed. A 3D micro-model with interfacial bonding structure was constructed at the upper enamel/adhesive interface where the stress concentration was found from the macro-model results. The morphology of this interfacial bonding structure (i.e., resin tag) was assigned based on resin tag geometry and enamel rod arrangement from a scanning electron microscopy micrograph. The boundary conditions for the micro-model were determined from the macro-model results. A custom iterative code combined with the element death technique was used to calculate the micro-crack propagation. Parallel experiments were performed to validate this FE simulation. The stress concentration within the adhesive occurred mainly at the upper corner near the enamel/adhesive interface and the resin tag base. A simulated fracture path was found at the resin tag base along the enamel/adhesive interface. A morphological observation of the fracture patterns obtained from in vitro testing corresponded with the simulation results. This study shows that the FE submodeling and element death techniques could be used to simulate the 3D micro-stress pattern and the crack propagation noted at the enamel/adhesive interface.

Multi-scale transport in the DIII-D ITER baseline scenario with direct electron heating and projection to ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grierson, B. A.; Staebler, G. M.; Solomon, W. M.

Multi-scale fluctuations measured by turbulence diagnostics spanning long and short wavelength spatial scales impact energy confinement and the scale-lengths of plasma kinetic profiles in the DIII-D ITER baseline scenario with direct electron heating. Contrasting discharge phases with ECH + neutral beam injection (NBI) and NBI only at similar rotation reveal higher energy confinement and lower fluctuations when only NBI heating is used. Modeling of the core transport with TGYRO using the TGLF turbulent transport model and NEO neoclassical transport reproduces the experimental profile changes upon application of direct electron heating and indicates that multi-scale transport mechanisms are responsible for changesmore » in the temperature and density profiles. Intermediate and high-k fluctuations appear responsible for the enhanced electron thermal flux, and intermediate-k electron modes produce an inward particle pinch that increases the inverse density scale length. Projection to ITER is performed with TGLF and indicates a density profile that has a finite scale length due to intermediate-k electron modes at low collisionality and increases the fusion gain. Finally, for a range of E×B shear, the dominant mechanism that increases fusion performance is suppression of outward low-k particle flux and increased density peaking.« less

Multi-scale transport in the DIII-D ITER baseline scenario with direct electron heating and projection to ITER

DOE PAGES

Grierson, B. A.; Staebler, G. M.; Solomon, W. M.; ...

2018-02-01

Multi-scale fluctuations measured by turbulence diagnostics spanning long and short wavelength spatial scales impact energy confinement and the scale-lengths of plasma kinetic profiles in the DIII-D ITER baseline scenario with direct electron heating. Contrasting discharge phases with ECH + neutral beam injection (NBI) and NBI only at similar rotation reveal higher energy confinement and lower fluctuations when only NBI heating is used. Modeling of the core transport with TGYRO using the TGLF turbulent transport model and NEO neoclassical transport reproduces the experimental profile changes upon application of direct electron heating and indicates that multi-scale transport mechanisms are responsible for changesmore » in the temperature and density profiles. Intermediate and high-k fluctuations appear responsible for the enhanced electron thermal flux, and intermediate-k electron modes produce an inward particle pinch that increases the inverse density scale length. Projection to ITER is performed with TGLF and indicates a density profile that has a finite scale length due to intermediate-k electron modes at low collisionality and increases the fusion gain. Finally, for a range of E×B shear, the dominant mechanism that increases fusion performance is suppression of outward low-k particle flux and increased density peaking.« less

Multi-scale transport in the DIII-D ITER baseline scenario with direct electron heating and projection to ITER

NASA Astrophysics Data System (ADS)

Grierson, B. A.; Staebler, G. M.; Solomon, W. M.; McKee, G. R.; Holland, C.; Austin, M.; Marinoni, A.; Schmitz, L.; Pinsker, R. I.; DIII-D Team

2018-02-01

Multi-scale fluctuations measured by turbulence diagnostics spanning long and short wavelength spatial scales impact energy confinement and the scale-lengths of plasma kinetic profiles in the DIII-D ITER baseline scenario with direct electron heating. Contrasting discharge phases with ECH + neutral beam injection (NBI) and NBI only at similar rotation reveal higher energy confinement and lower fluctuations when only NBI heating is used. Modeling of the core transport with TGYRO using the TGLF turbulent transport model and NEO neoclassical transport reproduces the experimental profile changes upon application of direct electron heating and indicates that multi-scale transport mechanisms are responsible for changes in the temperature and density profiles. Intermediate and high-k fluctuations appear responsible for the enhanced electron thermal flux, and intermediate-k electron modes produce an inward particle pinch that increases the inverse density scale length. Projection to ITER is performed with TGLF and indicates a density profile that has a finite scale length due to intermediate-k electron modes at low collisionality and increases the fusion gain. For a range of E × B shear, the dominant mechanism that increases fusion performance is suppression of outward low-k particle flux and increased density peaking.

FENDL: International reference nuclear data library for fusion applications

NASA Astrophysics Data System (ADS)

Pashchenko, A. B.; Wienke, H.; Ganesan, S.

1996-10-01

The IAEA Nuclear Data Section, in co-operation with several national nuclear data centres and research groups, has created the first version of an internationally available Fusion Evaluated Nuclear Data Library (FENDL-1). The FENDL library has been selected to serve as a comprehensive source of processed and tested nuclear data tailored to the requirements of the engineering design activity (EDA) of the ITER project and other fusion-related development projects. The present version of FENDL consists of the following sublibraries covering the necessary nuclear input for all physics and engineering aspects of the material development, design, operation and safety of the ITER project in its current EDA phase: FENDL/A-1.1: neutron activation cross-sections, selected from different available sources, for 636 nuclides, FENDL/D-1.0: nuclear decay data for 2900 nuclides in ENDF-6 format, FENDL/DS-1.0: neutron activation data for dosimetry by foil activation, FENDL/C-1.0: data for the fusion reactions D(d,n), D(d,p), T(d,n), T(t,2n), He-3(d,p) extracted from ENDF/B-6 and processed, FENDL/E-1.0:data for coupled neutron—photon transport calculations, including a data library for neutron interaction and photon production for 63 elements or isotopes, selected from ENDF/B-6, JENDL-3, or BROND-2, and a photon—atom interaction data library for 34 elements. The benchmark validation of FENDL-1 as required by the customer, i.e. the ITER team, is considered to be a task of high priority in the coming months. The well tested and validated nuclear data libraries in processed form of the FENDL-2 are expected to be ready by mid 1996 for use by the ITER team in the final phase of ITER EDA after extensive benchmarking and integral validation studies in the 1995-1996 period. The FENDL data files can be electronically transferred to users from the IAEA nuclear data section online system through INTERNET. A grand total of 54 (sub)directories with 845 files with total size of about 2 million blocks or about 1 Gigabyte (1 block = 512 bytes) of numerical data is currently available on-line.

Development of a model of the coronary arterial tree for the 4D XCAT phantom

NASA Astrophysics Data System (ADS)

Fung, George S. K.; Segars, W. Paul; Gullberg, Grant T.; Tsui, Benjamin M. W.

2011-09-01

A detailed three-dimensional (3D) model of the coronary artery tree with cardiac motion has great potential for applications in a wide variety of medical imaging research areas. In this work, we first developed a computer-generated 3D model of the coronary arterial tree for the heart in the extended cardiac-torso (XCAT) phantom, thereby creating a realistic computer model of the human anatomy. The coronary arterial tree model was based on two datasets: (1) a gated cardiac dual-source computed tomography (CT) angiographic dataset obtained from a normal human subject and (2) statistical morphometric data of porcine hearts. The initial proximal segments of the vasculature and the anatomical details of the boundaries of the ventricles were defined by segmenting the CT data. An iterative rule-based generation method was developed and applied to extend the coronary arterial tree beyond the initial proximal segments. The algorithm was governed by three factors: (1) statistical morphometric measurements of the connectivity, lengths and diameters of the arterial segments; (2) avoidance forces from other vessel segments and the boundaries of the myocardium, and (3) optimality principles which minimize the drag force at the bifurcations of the generated tree. Using this algorithm, the 3D computational model of the largest six orders of the coronary arterial tree was generated, which spread across the myocardium of the left and right ventricles. The 3D coronary arterial tree model was then extended to 4D to simulate different cardiac phases by deforming the original 3D model according to the motion vector map of the 4D cardiac model of the XCAT phantom at the corresponding phases. As a result, a detailed and realistic 4D model of the coronary arterial tree was developed for the XCAT phantom by imposing constraints of anatomical and physiological characteristics of the coronary vasculature. This new 4D coronary artery tree model provides a unique simulation tool that can be used in the development and evaluation of instrumentation and methods for imaging normal and pathological hearts with myocardial perfusion defects.

MPACT Theory Manual, Version 2.2.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Downar, Thomas; Collins, Benjamin S.; Gehin, Jess C.

2016-06-09

This theory manual describes the three-dimensional (3-D) whole-core, pin-resolved transport calculation methodology employed in the MPACT code. To provide sub-pin level power distributions with sufficient accuracy, MPACT employs the method of characteristics (MOC) solutions in the framework of a 3-D coarse mesh finite difference (CMFD) formulation. MPACT provides a 3D MOC solution, but also a 2D/1D solution in which the 2D planar solution is provided by MOC and the axial coupling is resolved by one-dimensional (1-D) lower order (diffusion or P3) solutions. In Chapter 2 of the manual, the MOC methodology is described for calculating the regional angular and scalarmore » fluxes from the Boltzmann transport equation. In Chapter 3, the 2D/1D methodology is described, together with the description of the CMFD iteration process involving dynamic homogenization and solution of the multigroup CMFD linear system. A description of the MPACT depletion algorithm is given in Chapter 4, followed by a discussion of the subgroup and ESSM resonance processing methods in Chapter 5. The final Chapter 6 describes a simplified thermal hydraulics model in MPACT.« less

Comparison of 3D displacements of screw-retained zirconia implant crowns into implants with different internal connections with respect to screw tightening.

PubMed

Rebeeah, Hanadi A; Yilmaz, Burak; Seidt, Jeremy D; McGlumphy, Edwin; Clelland, Nancy; Brantley, William

2018-01-01

Internal conical implant-abutment connections without horizontal platforms may lead to crown displacement during screw tightening and torque application. This displacement may affect the proximal contacts and occlusion of the definitive prosthesis. The purpose of this in vitro study was to evaluate the displacement of custom screw-retained zirconia single crowns into a recently introduced internal conical seal implant-abutment connection in 3D during hand and torque driver screw tightening. Stereolithic acrylic resin models were printed using computed tomography data from a patient missing the maxillary right central incisor. Two different internal connection implant systems (both ∼11.5 mm) were placed in the edentulous site in each model using a surgical guide. Five screw-retained single zirconia computer-aided design and computer-aided manufacturing (CAD-CAM) crowns were fabricated for each system. A pair of high-resolution digital cameras was used to record the relationship of the crown to the model. The crowns were tightened according to the manufacturers' specifications using a torque driver, and the cameras recorded their relative position again. Three-dimensional image correlation was used to measure and compare crown positions, first hand tightened and then torque driven. The displacement test was repeated 3 times for each crown. Commercial image correlation software was used to extract the data and compare the amount of displacement vertically, mesiodistally, and buccolingually. Repeated-measures ANOVA calculated the relative displacements for all 5 specimens for each implant for both crown screw hand tightening and after applied torque. A Student t test with Bonferroni correction was used for pairwise comparison of interest to determine statistical differences between the 2 implants (α=.05). The mean vertical displacements were statistically higher than the mean displacements in the mesiodistal and buccolingual directions for both implants (P<.001). Mean displacements in all directions were statistically significant between iterations for both implants (P<.001). No statistically significant differences were found for displacements between implants at different directions and at different iterations (P>.05). Within the limitations of this in vitro study, screw-retained zirconia crowns tended to displace in all 3 directions, with the highest mean displacement in the vertical direction at iteration 1. However, the amount of displacement of crowns between the 2 different implants was statistically insignificant for all directions and iterations. Copyright © 2017 Editorial Council for the Journal of Prosthetic Dentistry. Published by Elsevier Inc. All rights reserved.

Fast divide-and-conquer algorithm for evaluating polarization in classical force fields

NASA Astrophysics Data System (ADS)

Nocito, Dominique; Beran, Gregory J. O.

2017-03-01

Evaluation of the self-consistent polarization energy forms a major computational bottleneck in polarizable force fields. In large systems, the linear polarization equations are typically solved iteratively with techniques based on Jacobi iterations (JI) or preconditioned conjugate gradients (PCG). Two new variants of JI are proposed here that exploit domain decomposition to accelerate the convergence of the induced dipoles. The first, divide-and-conquer JI (DC-JI), is a block Jacobi algorithm which solves the polarization equations within non-overlapping sub-clusters of atoms directly via Cholesky decomposition, and iterates to capture interactions between sub-clusters. The second, fuzzy DC-JI, achieves further acceleration by employing overlapping blocks. Fuzzy DC-JI is analogous to an additive Schwarz method, but with distance-based weighting when averaging the fuzzy dipoles from different blocks. Key to the success of these algorithms is the use of K-means clustering to identify natural atomic sub-clusters automatically for both algorithms and to determine the appropriate weights in fuzzy DC-JI. The algorithm employs knowledge of the 3-D spatial interactions to group important elements in the 2-D polarization matrix. When coupled with direct inversion in the iterative subspace (DIIS) extrapolation, fuzzy DC-JI/DIIS in particular converges in a comparable number of iterations as PCG, but with lower computational cost per iteration. In the end, the new algorithms demonstrated here accelerate the evaluation of the polarization energy by 2-3 fold compared to existing implementations of PCG or JI/DIIS.

Grammar-Supported 3d Indoor Reconstruction from Point Clouds for As-Built Bim

NASA Astrophysics Data System (ADS)

Becker, S.; Peter, M.; Fritsch, D.

2015-03-01

The paper presents a grammar-based approach for the robust automatic reconstruction of 3D interiors from raw point clouds. The core of the approach is a 3D indoor grammar which is an extension of our previously published grammar concept for the modeling of 2D floor plans. The grammar allows for the modeling of buildings whose horizontal, continuous floors are traversed by hallways providing access to the rooms as it is the case for most office buildings or public buildings like schools, hospitals or hotels. The grammar is designed in such way that it can be embedded in an iterative automatic learning process providing a seamless transition from LOD3 to LOD4 building models. Starting from an initial low-level grammar, automatically derived from the window representations of an available LOD3 building model, hypotheses about indoor geometries can be generated. The hypothesized indoor geometries are checked against observation data - here 3D point clouds - collected in the interior of the building. The verified and accepted geometries form the basis for an automatic update of the initial grammar. By this, the knowledge content of the initial grammar is enriched, leading to a grammar with increased quality. This higher-level grammar can then be applied to predict realistic geometries to building parts where only sparse observation data are available. Thus, our approach allows for the robust generation of complete 3D indoor models whose quality can be improved continuously as soon as new observation data are fed into the grammar-based reconstruction process. The feasibility of our approach is demonstrated based on a real-world example.

Algebraic multigrid preconditioning within parallel finite-element solvers for 3-D electromagnetic modelling problems in geophysics

NASA Astrophysics Data System (ADS)

Koldan, Jelena; Puzyrev, Vladimir; de la Puente, Josep; Houzeaux, Guillaume; Cela, José María

2014-06-01

We present an elaborate preconditioning scheme for Krylov subspace methods which has been developed to improve the performance and reduce the execution time of parallel node-based finite-element (FE) solvers for 3-D electromagnetic (EM) numerical modelling in exploration geophysics. This new preconditioner is based on algebraic multigrid (AMG) that uses different basic relaxation methods, such as Jacobi, symmetric successive over-relaxation (SSOR) and Gauss-Seidel, as smoothers and the wave front algorithm to create groups, which are used for a coarse-level generation. We have implemented and tested this new preconditioner within our parallel nodal FE solver for 3-D forward problems in EM induction geophysics. We have performed series of experiments for several models with different conductivity structures and characteristics to test the performance of our AMG preconditioning technique when combined with biconjugate gradient stabilized method. The results have shown that, the more challenging the problem is in terms of conductivity contrasts, ratio between the sizes of grid elements and/or frequency, the more benefit is obtained by using this preconditioner. Compared to other preconditioning schemes, such as diagonal, SSOR and truncated approximate inverse, the AMG preconditioner greatly improves the convergence of the iterative solver for all tested models. Also, when it comes to cases in which other preconditioners succeed to converge to a desired precision, AMG is able to considerably reduce the total execution time of the forward-problem code-up to an order of magnitude. Furthermore, the tests have confirmed that our AMG scheme ensures grid-independent rate of convergence, as well as improvement in convergence regardless of how big local mesh refinements are. In addition, AMG is designed to be a black-box preconditioner, which makes it easy to use and combine with different iterative methods. Finally, it has proved to be very practical and efficient in the parallel context.

Data Assimilation on a Quantum Annealing Computer: Feasibility and Scalability

NASA Astrophysics Data System (ADS)

Nearing, G. S.; Halem, M.; Chapman, D. R.; Pelissier, C. S.

2014-12-01

Data assimilation is one of the ubiquitous and computationally hard problems in the Earth Sciences. In particular, ensemble-based methods require a large number of model evaluations to estimate the prior probability density over system states, and variational methods require adjoint calculations and iteration to locate the maximum a posteriori solution in the presence of nonlinear models and observation operators. Quantum annealing computers (QAC) like the new D-Wave housed at the NASA Ames Research Center can be used for optimization and sampling, and therefore offers a new possibility for efficiently solving hard data assimilation problems. Coding on the QAC is not straightforward: a problem must be posed as a Quadratic Unconstrained Binary Optimization (QUBO) and mapped to a spherical Chimera graph. We have developed a method for compiling nonlinear 4D-Var problems on the D-Wave that consists of five steps: Emulating the nonlinear model and/or observation function using radial basis functions (RBF) or Chebyshev polynomials. Truncating a Taylor series around each RBF kernel. Reducing the Taylor polynomial to a quadratic using ancilla gadgets. Mapping the real-valued quadratic to a fixed-precision binary quadratic. Mapping the fully coupled binary quadratic to a partially coupled spherical Chimera graph using ancilla gadgets. At present the D-Wave contains 512 qbits (with 1024 and 2048 qbit machines due in the next two years); this machine size allows us to estimate only 3 state variables at each satellite overpass. However, QAC's solve optimization problems using a physical (quantum) system, and therefore do not require iterations or calculation of model adjoints. This has the potential to revolutionize our ability to efficiently perform variational data assimilation, as the size of these computers grows in the coming years.

Helium experiments on Alcator C-Mod in support of ITER early operations

NASA Astrophysics Data System (ADS)

Kessel, C. E.; Wolfe, S. M.; Reinke, M. L.; Hughes, J. W.; Lin, Y.; Wukitch, S. J.; Baek, S. G.; Bonoli, P. T.; Chilenski, M.; Diallo, A.; the Alcator C-Mod Team

2018-05-01

Helium majority experiments on Alcator C-Mod were performed to compare with deuterium discharges, and inform ITER early operations. ELMy H-modes were produced with a special plasma shape at B T  =  5.3 T, I P  =  0.9 MA, at q 95 ~ 3.8. The He fraction ranged over, n He,L/n L  =  0.2-0.4, with n D,L/n L  =  0.15-0.26, compared to D plasmas with n D,L/n L  =  0.85-0.97. The power to enter the H-mode in He was found to be greater than ~2 times that for D discharges, in the low density region  <1.4  ×  1020/m3. However, it appears to follow the D threshold for higher densities. The stored energies in the He discharges were about 80% of those in D, and about 40% higher net power was required to sustain them compared to D. Global particle confinement times for tungsten of τ W* /τ E ~ 4 were obtained with ELMy H-modes in He, however accumulation occurred when the ELMs were irregular and infrequent. The electron temperatures and densities in the pedestal were similar between D and He discharges, and the ΔT e/T e and Δn e/n e values were similar or larger in He than D. The higher net power required to access the H-mode, and sustain it in flattop, for He discharges in C-Mod, imply some limitations for He operation in ITER.

Three-dimensional NDE of VHTR core components via simulation-based testing. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guzina, Bojan; Kunerth, Dennis

2014-09-30

A next generation, simulation-driven-and-enabled testing platform is developed for the 3D detection and characterization of defects and damage in nuclear graphite and composite structures in Very High Temperature Reactors (VHTRs). The proposed work addresses the critical need for the development of high-fidelity Non-Destructive Examination (NDE) technologies for as-manufactured and replaceable in-service VHTR components. Centered around the novel use of elastic (sonic and ultrasonic) waves, this project deploys a robust, non-iterative inverse solution for the 3D defect reconstruction together with a non-contact, laser-based approach to the measurement of experimental waveforms in VHTR core components. In particular, this research (1) deploys three-dimensionalmore » Scanning Laser Doppler Vibrometry (3D SLDV) as a means to accurately and remotely measure 3D displacement waveforms over the accessible surface of a VHTR core component excited by mechanical vibratory source; (2) implements a powerful new inverse technique, based on the concept of Topological Sensitivity (TS), for non-iterative elastic waveform tomography of internal defects - that permits robust 3D detection, reconstruction and characterization of discrete damage (e.g. holes and fractures) in nuclear graphite from limited-aperture NDE measurements; (3) implements state-of-the art computational (finite element) model that caters for accurately simulating elastic wave propagation in 3D blocks of nuclear graphite; (4) integrates the SLDV testing methodology with the TS imaging algorithm into a non-contact, high-fidelity NDE platform for the 3D reconstruction and characterization of defects and damage in VHTR core components; and (5) applies the proposed methodology to VHTR core component samples (both two- and three-dimensional) with a priori induced, discrete damage in the form of holes and fractures. Overall, the newly established SLDV-TS testing platform represents a next-generation NDE tool that surpasses all existing techniques for the 3D ultrasonic imaging of material damage from non-contact, limited-aperture waveform measurements. Outlook. The next stage in the development of this technology includes items such as (a) non-contact generation of mechanical vibrations in VHTR components via thermal expansion created by high-intensity laser; (b) development and incorporation of Synthetic Aperture Focusing Technique (SAFT) for elevating the accuracy of 3D imaging in highly noisy environments with minimal accessible surface; (c) further analytical and computational developments to facilitate the reconstruction of diffuse damage (e.g. microcracks) in nuclear graphite as they lead to the dispersion of elastic waves, (d) concept of model updating for accurate tracking of the evolution of material damage via periodic inspections; (d) adoption of the Bayesian framework to obtain information on the certainty of obtained images; and (e) optimization of the computational scheme toward real-time, model-based imaging of damage in VHTR core components.« less

ECCD-induced tearing mode stabilization via active control in coupled NIMROD/GENRAY HPC simulations

NASA Astrophysics Data System (ADS)

Jenkins, Thomas; Kruger, S. E.; Held, E. D.; Harvey, R. W.

2012-10-01

Actively controlled electron cyclotron current drive (ECCD) applied within magnetic islands formed by neoclassical tearing modes (NTMs) has been shown to control or suppress these modes. In conjunction with ongoing experimental efforts, the development and verification of integrated numerical models of this mode stabilization process is of paramount importance in determining optimal NTM stabilization strategies for ITER. In the advanced model developed by the SWIM Project, the equations/closures of extended (not reduced) MHD contain new terms arising from 3D (not toroidal or bounce-averaged) RF-induced quasilinear diffusion. The quasilinear operator formulation models the equilibration of driven current within the island using the same extended MHD dynamics which govern the physics of island formation, yielding a more accurate and self-consistent picture of 3D island response to RF drive. Results of computations which model ECRF deposition using ray tracing, assemble the 3D quasilinear operator from ray/profile data, and calculate the resultant forces within the extended MHD code will be presented. We also discuss the efficacy of various numerical active feedback control systems, which gather data from synthetic diagnostics to dynamically trigger and spatially align RF fields.

Experimental tests of linear and nonlinear three-dimensional equilibrium models in DIII-D

DOE PAGES

King, Josh D.; Strait, Edward J.; Lazerson, Samuel A.; ...

2015-07-01

DIII-D experiments using new detailed magnetic diagnostics show that linear, ideal magnetohydrodynamics (MHD) theory quantitatively describes the magnetic structure (as measured externally) of three-dimensional (3D) equilibria resulting from applied fields with toroidal mode number n = 1, while a nonlinear solution to ideal MHD force balance, using the VMEC code, requires the inclusion of n ≥ 1 to achieve similar agreement. Moreover, these tests are carried out near ITER baseline parameters, providing a validated basis on which to exploit 3D fields for plasma control development. We determine scans of the applied poloidal spectrum and edge safety factors which confirm thatmore » low-pressure, n = 1 non-axisymmetric tokamak equilibria are a single, dominant, stable eigenmode. But, at higher beta, near the ideal kink mode stability limit in the absence of a conducting wall, the qualitative features of the 3D structure are observed to vary in a way that is not captured by ideal MHD.« less

Simulation of the hybrid and steady state advanced operating modes in ITER

NASA Astrophysics Data System (ADS)

Kessel, C. E.; Giruzzi, G.; Sips, A. C. C.; Budny, R. V.; Artaud, J. F.; Basiuk, V.; Imbeaux, F.; Joffrin, E.; Schneider, M.; Murakami, M.; Luce, T.; St. John, Holger; Oikawa, T.; Hayashi, N.; Takizuka, T.; Ozeki, T.; Na, Y.-S.; Park, J. M.; Garcia, J.; Tucillo, A. A.

2007-09-01

Integrated simulations are performed to establish a physics basis, in conjunction with present tokamak experiments, for the operating modes in the International Thermonuclear Experimental Reactor (ITER). Simulations of the hybrid mode are done using both fixed and free-boundary 1.5D transport evolution codes including CRONOS, ONETWO, TSC/TRANSP, TOPICS and ASTRA. The hybrid operating mode is simulated using the GLF23 and CDBM05 energy transport models. The injected powers are limited to the negative ion neutral beam, ion cyclotron and electron cyclotron heating systems. Several plasma parameters and source parameters are specified for the hybrid cases to provide a comparison of 1.5D core transport modelling assumptions, source physics modelling assumptions, as well as numerous peripheral physics modelling. Initial results indicate that very strict guidelines will need to be imposed on the application of GLF23, for example, to make useful comparisons. Some of the variations among the simulations are due to source models which vary widely among the codes used. In addition, there are a number of peripheral physics models that should be examined, some of which include fusion power production, bootstrap current, treatment of fast particles and treatment of impurities. The hybrid simulations project to fusion gains of 5.6-8.3, βN values of 2.1-2.6 and fusion powers ranging from 350 to 500 MW, under the assumptions outlined in section 3. Simulations of the steady state operating mode are done with the same 1.5D transport evolution codes cited above, except the ASTRA code. In these cases the energy transport model is more difficult to prescribe, so that energy confinement models will range from theory based to empirically based. The injected powers include the same sources as used for the hybrid with the possible addition of lower hybrid. The simulations of the steady state mode project to fusion gains of 3.5-7, βN values of 2.3-3.0 and fusion powers of 290 to 415 MW, under the assumptions described in section 4. These simulations will be presented and compared with particular focus on the resulting temperature profiles, source profiles and peripheral physics profiles. The steady state simulations are at an early stage and are focused on developing a range of safety factor profiles with 100% non-inductive current.

A novel method to quantify and compare anatomical shape: application in cervix cancer radiotherapy

NASA Astrophysics Data System (ADS)

Oh, Seungjong; Jaffray, David; Cho, Young-Bin

2014-06-01

Adaptive radiation therapy (ART) had been proposed to restore dosimetric deficiencies during treatment delivery. In this paper, we developed a technique of Geometric reLocation for analyzing anatomical OBjects' Evolution (GLOBE) for a numerical model of tumor evolution under radiation therapy and characterized geometric changes of the target using GLOBE. A total of 174 clinical target volumes (CTVs) obtained from 32 cervical cancer patients were analyzed. GLOBE consists of three main steps; step (1) deforming a 3D surface object to a sphere by parametric active contour (PAC), step (2) sampling a deformed PAC on 642 nodes of icosahedron geodesic dome for reference frame, and step (3) unfolding 3D data to 2D plane for convenient visualization and analysis. The performance was evaluated with respect to (1) convergence of deformation (iteration number and computation time) and (2) accuracy of deformation (residual deformation). Based on deformation vectors from planning CTV to weekly CTVs, target specific (TS) margins were calculated on each sampled node of GLOBE and the systematic (Σ) and random (σ) variations of the vectors were calculated. Population based anisotropic (PBA) margins were generated using van Herk's margin recipe. GLOBE successfully modeled 152 CTVs from 28 patients. Fast convergence was observed for most cases (137/152) with the iteration number of 65 ± 74 (average ± STD) and the computation time of 13.7 ± 18.6 min. Residual deformation of PAC was 0.9 ± 0.7 mm and more than 97% was less than 3 mm. Margin analysis showed random nature of TS-margin. As a consequence, PBA-margins perform similarly to ISO-margins. For example, PBA-margins for 90% patients' coverage with 95% dose level is close to 13 mm ISO-margins in the aspect of target coverage and OAR sparing. GLOBE demonstrates a systematic analysis of tumor motion and deformation of patients with cervix cancer during radiation therapy and numerical modeling of PBA-margin on 642 locations of CTV surface.

Novel Scalable 3-D MT Inverse Solver

NASA Astrophysics Data System (ADS)

Kuvshinov, A. V.; Kruglyakov, M.; Geraskin, A.

2016-12-01

We present a new, robust and fast, three-dimensional (3-D) magnetotelluric (MT) inverse solver. As a forward modelling engine a highly-scalable solver extrEMe [1] is used. The (regularized) inversion is based on an iterative gradient-type optimization (quasi-Newton method) and exploits adjoint sources approach for fast calculation of the gradient of the misfit. The inverse solver is able to deal with highly detailed and contrasting models, allows for working (separately or jointly) with any type of MT (single-site and/or inter-site) responses, and supports massive parallelization. Different parallelization strategies implemented in the code allow for optimal usage of available computational resources for a given problem set up. To parameterize an inverse domain a mask approach is implemented, which means that one can merge any subset of forward modelling cells in order to account for (usually) irregular distribution of observation sites. We report results of 3-D numerical experiments aimed at analysing the robustness, performance and scalability of the code. In particular, our computational experiments carried out at different platforms ranging from modern laptops to high-performance clusters demonstrate practically linear scalability of the code up to thousands of nodes. 1. Kruglyakov, M., A. Geraskin, A. Kuvshinov, 2016. Novel accurate and scalable 3-D MT forward solver based on a contracting integral equation method, Computers and Geosciences, in press.

Phasor based single-molecule localization microscopy in 3D (pSMLM-3D): An algorithm for MHz localization rates using standard CPUs

NASA Astrophysics Data System (ADS)

Martens, Koen J. A.; Bader, Arjen N.; Baas, Sander; Rieger, Bernd; Hohlbein, Johannes

2018-03-01

We present a fast and model-free 2D and 3D single-molecule localization algorithm that allows more than 3 × 106 localizations per second to be calculated on a standard multi-core central processing unit with localization accuracies in line with the most accurate algorithms currently available. Our algorithm converts the region of interest around a point spread function to two phase vectors (phasors) by calculating the first Fourier coefficients in both the x- and y-direction. The angles of these phasors are used to localize the center of the single fluorescent emitter, and the ratio of the magnitudes of the two phasors is a measure for astigmatism, which can be used to obtain depth information (z-direction). Our approach can be used both as a stand-alone algorithm for maximizing localization speed and as a first estimator for more time consuming iterative algorithms.

Master equation theory applied to the redistribution of polarized radiation in the weak radiation field limit. IV. Application to the second solar spectrum of the Na I D1 and D2 lines

NASA Astrophysics Data System (ADS)

Bommier, Véronique

2016-06-01

Context. The spectrum of the linear polarization, which is formed by scattering and observed on the solar disk close to the limb, is very different from the intensity spectrum and thus able to provide new information, in particular about anisotropies in the solar surface plasma and magnetic fields. In addition, a large number of lines show far wing polarization structures assigned to partial redistribution (PRD), which we prefer to denote as Rayleigh/Raman scattering. The two-level or two-term atom approximation without any lower level polarization is insufficient for many lines. Aims: In the previous paper of this series, we presented our theory generalized to the multilevel and multiline atom and comprised of statistical equilibrium equations for the atomic density matrix elements and radiative transfer equation for the polarized radiation. The present paper is devoted to applying this theory to model the second solar spectrum of the Na I D1 and D2 lines. Methods: The solution method is iterative, of the lambda-iteration type. The usual acceleration techniques were considered or even applied, but we found these to be unsuccessful, in particular because of nonlinearity or large number of quantities determining the radiation at each depth. Results: The observed spectrum is qualitatively reproduced in line center, but the convergence is yet to be reached in the far wings and the observed spectrum is not totally reproduced there. Conclusions: We need to investigate noniterative resolution methods. The other limitation lies in the one-dimensional (1D) atmosphere model, which is unable to reproduce the intermittent matter structure formed of small loops or spicules in the chromosphere. This modeling is rough, but the computing time in the presence of hyperfine structure and PRD prevents us from envisaging a three-dimensional (3D) model at this instant.

A dynamic model-based approach to motion and deformation tracking of prosthetic valves from biplane x-ray images.

PubMed

Wagner, Martin G; Hatt, Charles R; Dunkerley, David A P; Bodart, Lindsay E; Raval, Amish N; Speidel, Michael A

2018-04-16

Transcatheter aortic valve replacement (TAVR) is a minimally invasive procedure in which a prosthetic heart valve is placed and expanded within a defective aortic valve. The device placement is commonly performed using two-dimensional (2D) fluoroscopic imaging. Within this work, we propose a novel technique to track the motion and deformation of the prosthetic valve in three dimensions based on biplane fluoroscopic image sequences. The tracking approach uses a parameterized point cloud model of the valve stent which can undergo rigid three-dimensional (3D) transformation and different modes of expansion. Rigid elements of the model are individually rotated and translated in three dimensions to approximate the motions of the stent. Tracking is performed using an iterative 2D-3D registration procedure which estimates the model parameters by minimizing the mean-squared image values at the positions of the forward-projected model points. Additionally, an initialization technique is proposed, which locates clusters of salient features to determine the initial position and orientation of the model. The proposed algorithms were evaluated based on simulations using a digital 4D CT phantom as well as experimentally acquired images of a prosthetic valve inside a chest phantom with anatomical background features. The target registration error was 0.12 ± 0.04 mm in the simulations and 0.64 ± 0.09 mm in the experimental data. The proposed algorithm could be used to generate 3D visualization of the prosthetic valve from two projections. In combination with soft-tissue sensitive-imaging techniques like transesophageal echocardiography, this technique could enable 3D image guidance during TAVR procedures. © 2018 American Association of Physicists in Medicine.

Analysis of the ITER central solenoid insert (CSI) coil stability tests

NASA Astrophysics Data System (ADS)

Savoldi, L.; Bonifetto, R.; Breschi, M.; Isono, T.; Martovetsky, N.; Ozeki, H.; Zanino, R.

2017-07-01

At the end of the test campaign of the ITER Central Solenoid Insert (CSI) coil in 2015, after 16,000 electromagnetic (EM) cycles, some tests were devoted to the study of the conductor stability, through the measurement of the Minimum Quench Energy (MQE). The tests were performed by means of an inductive heater (IH), located in the high-field region of the CSI and wrapped around the conductor. The calorimetric calibration of the IH is presented here, aimed at assessing the energy deposited in the conductor for different values of the IH electrical operating conditions. The MQE of the conductor of the ITER CS module 3L can be estimated as ∼200 J ± 20%, deposited on the whole conductor on a length of ∼10 cm (the IH length) in ∼40 ms, at current and magnetic field conditions relevant for the ITER CS operation. The repartition of the energy deposited in the conductor under the IH is computed to be ∼10% in the cable and 90% in the jacket by means of a 3D Finite Elements EM model. It is shown how this repartition implies that the bundle (cable + helium) heat capacity is fully available for stability on the time scale of the tested disturbances. This repartition is used in input to the thermal-hydraulic analysis performed with the 4C code, to assess the capability of the model to accurately reproduce the stability threshold of the conductor. The MQE computed by the code for this disturbance is in good agreement with the measured value, with an underestimation within 15% of the experimental value.

3D numerical simulations of negative hydrogen ion extraction using realistic plasma parameters, geometry of the extraction aperture and full 3D magnetic field map

NASA Astrophysics Data System (ADS)

Mochalskyy, S.; Wünderlich, D.; Ruf, B.; Franzen, P.; Fantz, U.; Minea, T.

2014-02-01

Decreasing the co-extracted electron current while simultaneously keeping negative ion (NI) current sufficiently high is a crucial issue on the development plasma source system for ITER Neutral Beam Injector. To support finding the best extraction conditions the 3D Particle-in-Cell Monte Carlo Collision electrostatic code ONIX (Orsay Negative Ion eXtraction) has been developed. Close collaboration with experiments and other numerical models allows performing realistic simulations with relevant input parameters: plasma properties, geometry of the extraction aperture, full 3D magnetic field map, etc. For the first time ONIX has been benchmarked with commercial positive ions tracing code KOBRA3D. A very good agreement in terms of the meniscus position and depth has been found. Simulation of NI extraction with different e/NI ratio in bulk plasma shows high relevance of the direct negative ion extraction from the surface produced NI in order to obtain extracted NI current as in the experimental results from BATMAN testbed.

3D first-arrival traveltime tomography with modified total variation regularization

NASA Astrophysics Data System (ADS)

Jiang, Wenbin; Zhang, Jie

2018-02-01

Three-dimensional (3D) seismic surveys have become a major tool in the exploration and exploitation of hydrocarbons. 3D seismic first-arrival traveltime tomography is a robust method for near-surface velocity estimation. A common approach for stabilizing the ill-posed inverse problem is to apply Tikhonov regularization to the inversion. However, the Tikhonov regularization method recovers smooth local structures while blurring the sharp features in the model solution. We present a 3D first-arrival traveltime tomography method with modified total variation (MTV) regularization to preserve sharp velocity contrasts and improve the accuracy of velocity inversion. To solve the minimization problem of the new traveltime tomography method, we decouple the original optimization problem into two following subproblems: a standard traveltime tomography problem with the traditional Tikhonov regularization and a L2 total variation problem. We apply the conjugate gradient method and split-Bregman iterative method to solve these two subproblems, respectively. Our synthetic examples show that the new method produces higher resolution models than the conventional traveltime tomography with Tikhonov regularization. We apply the technique to field data. The stacking section shows significant improvements with static corrections from the MTV traveltime tomography.

Direct 3D-printing of cell-laden constructs in microfluidic architectures.

PubMed

Liu, Justin; Hwang, Henry H; Wang, Pengrui; Whang, Grace; Chen, Shaochen

2016-04-21

Microfluidic platforms have greatly benefited the biological and medical fields, however standard practices require a high cost of entry in terms of time and energy. The utilization of three-dimensional (3D) printing technologies has greatly enhanced the ability to iterate and build functional devices with unique functions. However, their inability to fabricate within microfluidic devices greatly increases the cost of producing several different devices to examine different scientific questions. In this work, a variable height micromixer (VHM) is fabricated using projection 3D-printing combined with soft lithography. Theoretical and flow experiments demonstrate that altering the local z-heights of VHM improved mixing at lower flow rates than simple geometries. Mixing of two fluids occurs as low as 320 μL min(-1) in VHM whereas the planar zigzag region requires a flow rate of 2.4 mL min(-1) before full mixing occurred. Following device printing, to further demonstrate the ability of this projection-based method, complex, user-defined cell-laden scaffolds are directly printed inside the VHM. The utilization of this unique ability to produce 3D tissue models within a microfluidic system could offer a unique platform for medical diagnostics and disease modeling.

Role of positive ions on the surface production of negative ions in a fusion plasma reactor type negative ion source--Insights from a three dimensional particle-in-cell Monte Carlo collisions model

NASA Astrophysics Data System (ADS)

Fubiani, G.; Boeuf, J. P.

2013-11-01

Results from a 3D self-consistent Particle-In-Cell Monte Carlo Collisions (PIC MCC) model of a high power fusion-type negative ion source are presented for the first time. The model is used to calculate the plasma characteristics of the ITER prototype BATMAN ion source developed in Garching. Special emphasis is put on the production of negative ions on the plasma grid surface. The question of the relative roles of the impact of neutral hydrogen atoms and positive ions on the cesiated grid surface has attracted much attention recently and the 3D PIC MCC model is used to address this question. The results show that the production of negative ions by positive ion impact on the plasma grid is small with respect to the production by atomic hydrogen or deuterium bombardment (less than 10%).

Direct ambient noise tomography for 3-D near surface shear velocity structure: methodology and applications

NASA Astrophysics Data System (ADS)

Yao, H.; Fang, H.; Li, C.; Liu, Y.; Zhang, H.; van der Hilst, R. D.; Huang, Y. C.

2014-12-01

Ambient noise tomography has provided essential constraints on crustal and uppermost mantle shear velocity structure in global seismology. Recent studies demonstrate that high frequency (e.g., ~ 1 Hz) surface waves between receivers at short distances can be successfully retrieved from ambient noise cross-correlation and then be used for imaging near surface or shallow crustal shear velocity structures. This approach provides important information for strong ground motion prediction in seismically active area and overburden structure characterization in oil and gas fields. Here we propose a new tomographic method to invert all surface wave dispersion data for 3-D variations of shear wavespeed without the intermediate step of phase or group velocity maps.The method uses frequency-dependent propagation paths and a wavelet-based sparsity-constrained tomographic inversion. A fast marching method is used to compute, at each period, surface wave traveltimes and ray paths between sources and receivers. This avoids the assumption of great-circle propagation that is used in most surface wave tomographic studies, but which is not appropriate in complex media. The wavelet coefficients of the velocity model are estimated with an iteratively reweighted least squares (IRLS) algorithm, and upon iterations the surface wave ray paths and the data sensitivity matrix are updated from the newly obtained velocity model. We apply this new method to determine the 3-D near surface wavespeed variations in the Taipei basin of Taiwan, Hefei urban area and a shale and gas production field in China using the high-frequency interstation Rayleigh wave dispersion data extracted from ambient noisecross-correlation. The results reveal strong effects of off-great-circle propagation of high-frequency surface waves in these regions with above 30% shear wavespeed variations. The proposed approach is more efficient and robust than the traditional two-step surface wave tomography for imaging complex structures. In the future, approximate 3-D sensitivity kernels for dispersion data will be incorporated to account for finite-frequency effect of surface wave propagation. In addition, our approach provides a consistent framework for joint inversion of surface wave dispersion and body wave traveltime data for 3-D Vp and Vs structures.

Joint detection of anatomical points on surface meshes and color images for visual registration of 3D dental models

NASA Astrophysics Data System (ADS)

Destrez, Raphaël.; Albouy-Kissi, Benjamin; Treuillet, Sylvie; Lucas, Yves

2015-04-01

Computer aided planning for orthodontic treatment requires knowing occlusion of separately scanned dental casts. A visual guided registration is conducted starting by extracting corresponding features in both photographs and 3D scans. To achieve this, dental neck and occlusion surface are firstly extracted by image segmentation and 3D curvature analysis. Then, an iterative registration process is conducted during which feature positions are refined, guided by previously found anatomic edges. The occlusal edge image detection is improved by an original algorithm which follows Canny's poorly detected edges using a priori knowledge of tooth shapes. Finally, the influence of feature extraction and position optimization is evaluated in terms of the quality of the induced registration. Best combination of feature detection and optimization leads to a positioning average error of 1.10 mm and 2.03°.

Automatic 3D kidney segmentation based on shape constrained GC-OAAM

NASA Astrophysics Data System (ADS)

Chen, Xinjian; Summers, Ronald M.; Yao, Jianhua

2011-03-01

The kidney can be classified into three main tissue types: renal cortex, renal medulla and renal pelvis (or collecting system). Dysfunction of different renal tissue types may cause different kidney diseases. Therefore, accurate and efficient segmentation of kidney into different tissue types plays a very important role in clinical research. In this paper, we propose an automatic 3D kidney segmentation method which segments the kidney into the three different tissue types: renal cortex, medulla and pelvis. The proposed method synergistically combines active appearance model (AAM), live wire (LW) and graph cut (GC) methods, GC-OAAM for short. Our method consists of two main steps. First, a pseudo 3D segmentation method is employed for kidney initialization in which the segmentation is performed slice-by-slice via a multi-object oriented active appearance model (OAAM) method. An improved iterative model refinement algorithm is proposed for the AAM optimization, which synergistically combines the AAM and LW method. Multi-object strategy is applied to help the object initialization. The 3D model constraints are applied to the initialization result. Second, the object shape information generated from the initialization step is integrated into the GC cost computation. A multi-label GC method is used to segment the kidney into cortex, medulla and pelvis. The proposed method was tested on 19 clinical arterial phase CT data sets. The preliminary results showed the feasibility and efficiency of the proposed method.

Simulation of dense amorphous polymers by generating representative atomistic models

NASA Astrophysics Data System (ADS)

Curcó, David; Alemán, Carlos

2003-08-01

A method for generating atomistic models of dense amorphous polymers is presented. The generated models can be used as starting structures of Monte Carlo and molecular dynamics simulations, but also are suitable for the direct evaluation physical properties. The method is organized in a two-step procedure. First, structures are generated using an algorithm that minimizes the torsional strain. After this, an iterative algorithm is applied to relax the nonbonding interactions. In order to check the performance of the method we examined structure-dependent properties for three polymeric systems: polyethyelene (ρ=0.85 g/cm3), poly(L,D-lactic) acid (ρ=1.25 g/cm3), and polyglycolic acid (ρ=1.50 g/cm3). The method successfully generated representative packings for such dense systems using minimum computational resources.

Rotation and neoclassical ripple transport in ITER

DOE PAGES

Paul, Elizabeth Joy; Landreman, Matt; Poli, Francesca M.; ...

2017-07-13

Neoclassical transport in the presence of non-axisymmetric magnetic fields causes a toroidal torque known as neoclassical toroidal viscosity (NTV). The toroidal symmetry of ITER will be broken by the finite number of toroidal field coils and by test blanket modules (TBMs). The addition of ferritic inserts (FIs) will decrease the magnitude of the toroidal field ripple. 3D magnetic equilibria in the presence of toroidal field ripple and ferromagnetic structures are calculated for an ITER steady-state scenario using the Variational Moments Equilibrium Code (VMEC). Furthermore, neoclassical transport quantities in the presence of these error fields are calculated using the Stellarator Fokker-Planckmore » Iterative Neoclassical Conservative Solver (SFINCS).« less

Rotation and neoclassical ripple transport in ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paul, Elizabeth Joy; Landreman, Matt; Poli, Francesca M.

Neoclassical transport in the presence of non-axisymmetric magnetic fields causes a toroidal torque known as neoclassical toroidal viscosity (NTV). The toroidal symmetry of ITER will be broken by the finite number of toroidal field coils and by test blanket modules (TBMs). The addition of ferritic inserts (FIs) will decrease the magnitude of the toroidal field ripple. 3D magnetic equilibria in the presence of toroidal field ripple and ferromagnetic structures are calculated for an ITER steady-state scenario using the Variational Moments Equilibrium Code (VMEC). Furthermore, neoclassical transport quantities in the presence of these error fields are calculated using the Stellarator Fokker-Planckmore » Iterative Neoclassical Conservative Solver (SFINCS).« less

A CNN Regression Approach for Real-Time 2D/3D Registration.

PubMed

Shun Miao; Wang, Z Jane; Rui Liao

2016-05-01

In this paper, we present a Convolutional Neural Network (CNN) regression approach to address the two major limitations of existing intensity-based 2-D/3-D registration technology: 1) slow computation and 2) small capture range. Different from optimization-based methods, which iteratively optimize the transformation parameters over a scalar-valued metric function representing the quality of the registration, the proposed method exploits the information embedded in the appearances of the digitally reconstructed radiograph and X-ray images, and employs CNN regressors to directly estimate the transformation parameters. An automatic feature extraction step is introduced to calculate 3-D pose-indexed features that are sensitive to the variables to be regressed while robust to other factors. The CNN regressors are then trained for local zones and applied in a hierarchical manner to break down the complex regression task into multiple simpler sub-tasks that can be learned separately. Weight sharing is furthermore employed in the CNN regression model to reduce the memory footprint. The proposed approach has been quantitatively evaluated on 3 potential clinical applications, demonstrating its significant advantage in providing highly accurate real-time 2-D/3-D registration with a significantly enlarged capture range when compared to intensity-based methods.

Robust design of feedback feed-forward iterative learning control based on 2D system theory for linear uncertain systems

NASA Astrophysics Data System (ADS)

Li, Zhifu; Hu, Yueming; Li, Di

2016-08-01

For a class of linear discrete-time uncertain systems, a feedback feed-forward iterative learning control (ILC) scheme is proposed, which is comprised of an iterative learning controller and two current iteration feedback controllers. The iterative learning controller is used to improve the performance along the iteration direction and the feedback controllers are used to improve the performance along the time direction. First of all, the uncertain feedback feed-forward ILC system is presented by an uncertain two-dimensional Roesser model system. Then, two robust control schemes are proposed. One can ensure that the feedback feed-forward ILC system is bounded-input bounded-output stable along time direction, and the other can ensure that the feedback feed-forward ILC system is asymptotically stable along time direction. Both schemes can guarantee the system is robust monotonically convergent along the iteration direction. Third, the robust convergent sufficient conditions are given, which contains a linear matrix inequality (LMI). Moreover, the LMI can be used to determine the gain matrix of the feedback feed-forward iterative learning controller. Finally, the simulation results are presented to demonstrate the effectiveness of the proposed schemes.

The Impact of Different Levels of Adaptive Iterative Dose Reduction 3D on Image Quality of 320-Row Coronary CT Angiography: A Clinical Trial

PubMed Central

Feger, Sarah; Rief, Matthias; Zimmermann, Elke; Martus, Peter; Schuijf, Joanne Désirée; Blobel, Jörg; Richter, Felicitas; Dewey, Marc

2015-01-01

Purpose The aim of this study was the systematic image quality evaluation of coronary CT angiography (CTA), reconstructed with the 3 different levels of adaptive iterative dose reduction (AIDR 3D) and compared to filtered back projection (FBP) with quantum denoising software (QDS). Methods Standard-dose CTA raw data of 30 patients with mean radiation dose of 3.2 ± 2.6 mSv were reconstructed using AIDR 3D mild, standard, strong and compared to FBP/QDS. Objective image quality comparison (signal, noise, signal-to-noise ratio (SNR), contrast-to-noise ratio (CNR), contour sharpness) was performed using 21 measurement points per patient, including measurements in each coronary artery from proximal to distal. Results Objective image quality parameters improved with increasing levels of AIDR 3D. Noise was lowest in AIDR 3D strong (p≤0.001 at 20/21 measurement points; compared with FBP/QDS). Signal and contour sharpness analysis showed no significant difference between the reconstruction algorithms for most measurement points. Best coronary SNR and CNR were achieved with AIDR 3D strong. No loss of SNR or CNR in distal segments was seen with AIDR 3D as compared to FBP. Conclusions On standard-dose coronary CTA images, AIDR 3D strong showed higher objective image quality than FBP/QDS without reducing contour sharpness. Trial Registration Clinicaltrials.gov NCT00967876 PMID:25945924

Understanding and predicting the dynamics of tokamak discharges during startup and rampdown

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jackson, G. L.; Politzer, P. A.; Humphreys, D. A.

Understanding the dynamics of plasma startup and termination is important for present tokamaks and for predictive modeling of future burning plasma devices such as ITER. We report on experiments in the DIII-D tokamak that explore the plasma startup and rampdown phases and on the benchmarking of transport models. Key issues have been examined such as plasma initiation and burnthrough with limited inductive voltage and achieving flattop and maximum burn within the technical limits of coil systems and their actuators while maintaining the desired q profile. Successful rampdown requires scenarios consistent with technical limits, including controlled H-L transitions, while avoiding verticalmore » instabilities, additional Ohmic transformer flux consumption, and density limit disruptions. Discharges were typically initiated with an inductive electric field typical of ITER, 0.3 V/m, most with second harmonic electron cyclotron assist. A fast framing camera was used during breakdown and burnthrough of low Z impurity charge states to study the formation physics. An improved 'large aperture' ITER startup scenario was developed, and aperture reduction in rampdown was found to be essential to avoid instabilities. Current evolution using neoclassical conductivity in the CORSICA code agrees with rampup experiments, but the prediction of the temperature and internal inductance evolution using the Coppi-Tang model for electron energy transport is not yet accurate enough to allow extrapolation to future devices.« less

Equivalent charge source model based iterative maximum neighbor weight for sparse EEG source localization.

PubMed

Xu, Peng; Tian, Yin; Lei, Xu; Hu, Xiao; Yao, Dezhong

2008-12-01

How to localize the neural electric activities within brain effectively and precisely from the scalp electroencephalogram (EEG) recordings is a critical issue for current study in clinical neurology and cognitive neuroscience. In this paper, based on the charge source model and the iterative re-weighted strategy, proposed is a new maximum neighbor weight based iterative sparse source imaging method, termed as CMOSS (Charge source model based Maximum neighbOr weight Sparse Solution). Different from the weight used in focal underdetermined system solver (FOCUSS) where the weight for each point in the discrete solution space is independently updated in iterations, the new designed weight for each point in each iteration is determined by the source solution of the last iteration at both the point and its neighbors. Using such a new weight, the next iteration may have a bigger chance to rectify the local source location bias existed in the previous iteration solution. The simulation studies with comparison to FOCUSS and LORETA for various source configurations were conducted on a realistic 3-shell head model, and the results confirmed the validation of CMOSS for sparse EEG source localization. Finally, CMOSS was applied to localize sources elicited in a visual stimuli experiment, and the result was consistent with those source areas involved in visual processing reported in previous studies.

Design, fabrication, and implementation of voxel-based 3D printed textured phantoms for task-based image quality assessment in CT

NASA Astrophysics Data System (ADS)

Solomon, Justin; Ba, Alexandre; Diao, Andrew; Lo, Joseph; Bier, Elianna; Bochud, François; Gehm, Michael; Samei, Ehsan

2016-03-01

In x-ray computed tomography (CT), task-based image quality studies are typically performed using uniform background phantoms with low-contrast signals. Such studies may have limited clinical relevancy for modern non-linear CT systems due to possible influence of background texture on image quality. The purpose of this study was to design and implement anatomically informed textured phantoms for task-based assessment of low-contrast detection. Liver volumes were segmented from 23 abdominal CT cases. The volumes were characterized in terms of texture features from gray-level co-occurrence and run-length matrices. Using a 3D clustered lumpy background (CLB) model, a fitting technique based on a genetic optimization algorithm was used to find the CLB parameters that were most reflective of the liver textures, accounting for CT system factors of spatial blurring and noise. With the modeled background texture as a guide, a cylinder phantom (165 mm in diameter and 30 mm height) was designed, containing 20 low-contrast spherical signals (6 mm in diameter at targeted contrast levels of ~3.2, 5.2, 7.2, 10, and 14 HU, 4 repeats per signal). The phantom was voxelized and input into a commercial multi-material 3D printer (Object Connex 350), with custom software for voxel-based printing. Using principles of digital half-toning and dithering, the 3D printer was programmed to distribute two base materials (VeroWhite and TangoPlus, nominal voxel size of 42x84x30 microns) to achieve the targeted spatial distribution of x-ray attenuation properties. The phantom was used for task-based image quality assessment of a clinically available iterative reconstruction algorithm (Sinogram Affirmed Iterative Reconstruction, SAFIRE) using a channelized Hotelling observer paradigm. Images of the textured phantom and a corresponding uniform phantom were acquired at six dose levels and observer model performance was estimated for each condition (5 contrasts x 6 doses x 2 reconstructions x 2 backgrounds = 120 total conditions). Based on the observer model results, the dose reduction potential of SAFIRE was computed and compared between the uniform and textured phantom. The dose reduction potential of SAFIRE was found to be 23% based on the uniform phantom and 17% based on the textured phantom. This discrepancy demonstrates the need to consider background texture when assessing non-linear reconstruction algorithms.

Learning normalized inputs for iterative estimation in medical image segmentation.

PubMed

Drozdzal, Michal; Chartrand, Gabriel; Vorontsov, Eugene; Shakeri, Mahsa; Di Jorio, Lisa; Tang, An; Romero, Adriana; Bengio, Yoshua; Pal, Chris; Kadoury, Samuel

2018-02-01

In this paper, we introduce a simple, yet powerful pipeline for medical image segmentation that combines Fully Convolutional Networks (FCNs) with Fully Convolutional Residual Networks (FC-ResNets). We propose and examine a design that takes particular advantage of recent advances in the understanding of both Convolutional Neural Networks as well as ResNets. Our approach focuses upon the importance of a trainable pre-processing when using FC-ResNets and we show that a low-capacity FCN model can serve as a pre-processor to normalize medical input data. In our image segmentation pipeline, we use FCNs to obtain normalized images, which are then iteratively refined by means of a FC-ResNet to generate a segmentation prediction. As in other fully convolutional approaches, our pipeline can be used off-the-shelf on different image modalities. We show that using this pipeline, we exhibit state-of-the-art performance on the challenging Electron Microscopy benchmark, when compared to other 2D methods. We improve segmentation results on CT images of liver lesions, when contrasting with standard FCN methods. Moreover, when applying our 2D pipeline on a challenging 3D MRI prostate segmentation challenge we reach results that are competitive even when compared to 3D methods. The obtained results illustrate the strong potential and versatility of the pipeline by achieving accurate segmentations on a variety of image modalities and different anatomical regions. Copyright © 2017 Elsevier B.V. All rights reserved.

Using Divertor Strike Point Splitting to Study Plasma Response and Its Sensitivity to Equilibrium Uncertainties

NASA Astrophysics Data System (ADS)

Teklu, Abraham; Orlov, D. M.; Moyer, R. A.; Bykov, I.; Evans, T. E.; Wu, W.; Trevisan, G. L.; Lyons, B. C.; Abrams, T.; Makowski, M. A.; Lasnier, C. S.; Fenstermacher, M. E.

2017-10-01

Resonant magnetic perturbations (RMPs) from 3D coils have been varied to modify the splitting of the divertor strike points in DIII-D. This splitting is imaged in filtered visible and infrared emission from the divertor to determine the particle and heat flux patterns on the target plates. The observed splitting is compared to vacuum and plasma response modeling in discharges where a subset of the RMP coils were ramped to shift the divertor footprints from dominantly n = 3 to n = 2 pattern. These results will be used to determine if the plasma response model can be validated with the measured splitting. We will also study the sensitivity of the modeled splitting to details of the 2D equilibrium. This RMP ramp technique could be used in ITER to spread out the heat flux while avoiding excessive forces on the RMP coils. Work supported by U.S. DOE under the Science Undergraduate Laboratory Internship (SULI) program and DE-FC02-04ER54698, DE-FG02-07ER54917, DE-FG02-05ER54809 and DE-AC52-07NA27344.

The MHOST finite element program: 3-D inelastic analysis methods for hot section components. Volume 1: Theoretical manual

NASA Technical Reports Server (NTRS)

Nakazawa, Shohei

1991-01-01

Formulations and algorithms implemented in the MHOST finite element program are discussed. The code uses a novel concept of the mixed iterative solution technique for the efficient 3-D computations of turbine engine hot section components. The general framework of variational formulation and solution algorithms are discussed which were derived from the mixed three field Hu-Washizu principle. This formulation enables the use of nodal interpolation for coordinates, displacements, strains, and stresses. Algorithmic description of the mixed iterative method includes variations for the quasi static, transient dynamic and buckling analyses. The global-local analysis procedure referred to as the subelement refinement is developed in the framework of the mixed iterative solution, of which the detail is presented. The numerically integrated isoparametric elements implemented in the framework is discussed. Methods to filter certain parts of strain and project the element discontinuous quantities to the nodes are developed for a family of linear elements. Integration algorithms are described for linear and nonlinear equations included in MHOST program.

Iterative decoding of SOVA and LDPC product code for bit-patterned media recoding

NASA Astrophysics Data System (ADS)

Jeong, Seongkwon; Lee, Jaejin

2018-05-01

The demand for high-density storage systems has increased due to the exponential growth of data. Bit-patterned media recording (BPMR) is one of the promising technologies to achieve the density of 1Tbit/in2 and higher. To increase the areal density in BPMR, the spacing between islands needs to be reduced, yet this aggravates inter-symbol interference and inter-track interference and degrades the bit error rate performance. In this paper, we propose a decision feedback scheme using low-density parity check (LDPC) product code for BPMR. This scheme can improve the decoding performance using an iterative approach with extrinsic information and log-likelihood ratio value between iterative soft output Viterbi algorithm and LDPC product code. Simulation results show that the proposed LDPC product code can offer 1.8dB and 2.3dB gains over the one LDPC code at the density of 2.5 and 3 Tb/in2, respectively, when bit error rate is 10-6.

Adaptive Iterative Dose Reduction Using Three Dimensional Processing (AIDR3D) improves chest CT image quality and reduces radiation exposure.

PubMed

Yamashiro, Tsuneo; Miyara, Tetsuhiro; Honda, Osamu; Kamiya, Hisashi; Murata, Kiyoshi; Ohno, Yoshiharu; Tomiyama, Noriyuki; Moriya, Hiroshi; Koyama, Mitsuhiro; Noma, Satoshi; Kamiya, Ayano; Tanaka, Yuko; Murayama, Sadayuki

2014-01-01

To assess the advantages of Adaptive Iterative Dose Reduction using Three Dimensional Processing (AIDR3D) for image quality improvement and dose reduction for chest computed tomography (CT). Institutional Review Boards approved this study and informed consent was obtained. Eighty-eight subjects underwent chest CT at five institutions using identical scanners and protocols. During a single visit, each subject was scanned using different tube currents: 240, 120, and 60 mA. Scan data were converted to images using AIDR3D and a conventional reconstruction mode (without AIDR3D). Using a 5-point scale from 1 (non-diagnostic) to 5 (excellent), three blinded observers independently evaluated image quality for three lung zones, four patterns of lung disease (nodule/mass, emphysema, bronchiolitis, and diffuse lung disease), and three mediastinal measurements (small structure visibility, streak artifacts, and shoulder artifacts). Differences in these scores were assessed by Scheffe's test. At each tube current, scans using AIDR3D had higher scores than those without AIDR3D, which were significant for lung zones (p<0.0001) and all mediastinal measurements (p<0.01). For lung diseases, significant improvements with AIDR3D were frequently observed at 120 and 60 mA. Scans with AIDR3D at 120 mA had significantly higher scores than those without AIDR3D at 240 mA for lung zones and mediastinal streak artifacts (p<0.0001), and slightly higher or equal scores for all other measurements. Scans with AIDR3D at 60 mA were also judged superior or equivalent to those without AIDR3D at 120 mA. For chest CT, AIDR3D provides better image quality and can reduce radiation exposure by 50%.

Upper limb stroke rehabilitation: the effectiveness of Stimulation Assistance through Iterative Learning (SAIL).

PubMed

Meadmore, Katie L; Cai, Zhonglun; Tong, Daisy; Hughes, Ann-Marie; Freeman, Chris T; Rogers, Eric; Burridge, Jane H

2011-01-01

A novel system has been developed which combines robotic therapy with electrical stimulation (ES) for upper limb stroke rehabilitation. This technology, termed SAIL: Stimulation Assistance through Iterative Learning, employs advanced model-based iterative learning control (ILC) algorithms to precisely assist participant's completion of 3D tracking tasks with their impaired arm. Data is reported from a preliminary study with unimpaired participants, and also from a single hemiparetic stroke participant with reduced upper limb function who has used the system in a clinical trial. All participants completed tasks which involved moving their (impaired) arm to follow an image of a slowing moving sphere along a trajectory. The participants' arm was supported by a robot and ES was applied to the triceps brachii and anterior deltoid muscles. During each task, the same tracking trajectory was repeated 6 times and ILC was used to compute the stimulation signals to be applied on the next iteration. Unimpaired participants took part in a single, one hour training session and the stroke participant undertook 18, 1 hour treatment sessions composed of tracking tasks varying in length, orientation and speed. The results reported describe changes in tracking ability and demonstrate feasibility of the SAIL system for upper limb rehabilitation. © 2011 IEEE

Key achievements in elementary R&D on water-cooled solid breeder blanket for ITER test blanket module in JAERI

NASA Astrophysics Data System (ADS)

Suzuki, S.; Enoeda, M.; Hatano, T.; Hirose, T.; Hayashi, K.; Tanigawa, H.; Ochiai, K.; Nishitani, T.; Tobita, K.; Akiba, M.

2006-02-01

This paper presents the significant progress made in the research and development (R&D) of key technologies on the water-cooled solid breeder blanket for the ITER test blanket modules in JAERI. Development of module fabrication technology, bonding technology of armours, measurement of thermo-mechanical properties of pebble beds, neutronics studies on a blanket module mockup and tritium release behaviour from a Li2TiO3 pebble bed under neutron-pulsed operation conditions are summarized. With the improvement of the heat treatment process for blanket module fabrication, a fine-grained microstructure of F82H can be obtained by homogenizing it at 1150 °C followed by normalizing it at 930 °C after the hot isostatic pressing process. Moreover, a promising bonding process for a tungsten armour and an F82H structural material was developed using a solid-state bonding method based on uniaxial hot compression without any artificial compliant layer. As a result of high heat flux tests of F82H first wall mockups, it has been confirmed that a fatigue lifetime correlation, which was developed for the ITER divertor, can be made applicable for the F82H first wall mockup. As for R&D on the breeder material, Li2TiO3, the effect of compression loads on effective thermal conductivity of pebble beds has been clarified for the Li2TiO3 pebble bed. The tritium breeding ratio of a simulated multi-layer blanket structure has successfully been measured using 14 MeV neutrons with an accuracy of 10%. The tritium release rate from the Li2TiO3 pebble has also been successfully measured with pulsed neutron irradiation, which simulates ITER operation.

Simulation of the hot rolling of steel with direct iteration

NASA Astrophysics Data System (ADS)

Hanoglu, Umut; Šarler, Božidar

2017-10-01

In this study a simulation system based on the meshless Local Radial Basis Function Collocation Method (LRBFCM) is applied for the hot rolling of steel. Rolling is a complex, 3D, thermo-mechanical problem; however, 2D cross-sectional slices are used as computational domains that are aligned with the rolling direction and no heat flow or strain is considered in the direction that is orthogonal to the slices. For each predefined position with respect to the rolling direction, the solution procedure is repeated until the slice reaches the final rolling position. Collocation nodes are initially distributed over the domain and boundaries of the initial slice. A local solution is achieved by considering the overlapping influence domains with either 5 or 7 nodes. Radial Basis Functions (RBFs) are used for the temperature discretization in the thermal model and displacement discretization in the mechanical model. The meshless solution procedure does not require a mesh-generation algorithm in the classic sense. Strong-form mechanical and thermal models are run for each slice regarding the contact with the roll's surface. Ideal plastic material behavior is considered for the mechanical results, where the nonlinear stress-strain relation is solved with a direct iteration. The majority of the Finite Element Model (FEM) simulations, including commercial software, use a conventional Newton-Raphson algorithm. However, direct iteration is chosen here due to its better compatibility with meshless methods. In order to overcome any unforeseen stability issues, the redistribution of the nodes by Elliptic Node Generation (ENG) is applied to one or more slices throughout the simulation. The rolling simulation presented here helps the user to design, test and optimize different rolling schedules. The results can be seen minutes after the simulation's start in terms of temperature, displacement, stress and strain fields as well as important technological parameters, like the roll-separating forces, roll toque, etc. An example of a rolling simulation, in which an initial size of 110x110 mm steel is rolled to a round bar with 80 mm diameter, is shown in Fig. 3. A user-friendly computer application for industrial use is created by using the C# and .NET frameworks.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qian, Jinping P.; Garofalo, Andrea M.; Gong, Xianzu Z.

Recent EAST/DIII-D joint experiments on the high poloidal betamore » $${{\\beta}_{\\text{P}}}$$ regime in DIII-D have extended operation with internal transport barriers (ITBs) and excellent energy confinement (H 98y2 ~ 1.6) to higher plasma current, for lower q 95 ≤ 7.0, and more balanced neutral beam injection (NBI) (torque injection < 2 Nm), for lower plasma rotation than previous results. Transport analysis and experimental measurements at low toroidal rotation suggest that the E × B shear effect is not key to the ITB formation in these high $${{\\beta}_{\\text{P}}}$$ discharges. Experiments and TGLF modeling show that the Shafranov shift has a key stabilizing effect on turbulence. Extrapolation of the DIII-D results using a 0D model shows that with the improved confinement, the high bootstrap fraction regime could achieve fusion gain Q = 5 in ITER at $${{\\beta}_{\\text{N}}}$$ ~ 2.9 and q 95 ~ 7. With the optimization of q(0), the required improved confinement is achievable when using 1.5D TGLF-SAT1 for transport simulations. Furthermore, results reported in this paper suggest that the DIII-D high $${{\\beta}_{\\text{P}}}$$ scenario could be a candidate for ITER steady state operation.« less

Modelling of thermal shock experiments of carbon based materials in JUDITH

NASA Astrophysics Data System (ADS)

Ogorodnikova, O. V.; Pestchanyi, S.; Koza, Y.; Linke, J.

2005-03-01

The interaction of hot plasma with material in fusion devices can result in material erosion and irreversible damage. Carbon based materials are proposed for ITER divertor armour. To simulate carbon erosion under high heat fluxes, electron beam heating in the JUDITH facility has been used. In this paper, carbon erosion under energetic electron impact is modeled by the 3D thermomechanics code 'PEGASUS-3D'. The code is based on a crack generation induced by thermal stress. The particle emission observed in thermal shock experiments is a result of breaking bonds between grains caused by thermal stress. The comparison of calculations with experimental data from JUDITH shows good agreement for various incident power densities and pulse durations. A realistic mean failure stress has been found. Pre-heating of test specimens results in earlier onset of brittle destruction and enhanced particle loss in agreement with experiments.

Enhanced ICP for the Registration of Large-Scale 3D Environment Models: An Experimental Study

PubMed Central

Han, Jianda; Yin, Peng; He, Yuqing; Gu, Feng

2016-01-01

One of the main applications of mobile robots is the large-scale perception of the outdoor environment. One of the main challenges of this application is fusing environmental data obtained by multiple robots, especially heterogeneous robots. This paper proposes an enhanced iterative closest point (ICP) method for the fast and accurate registration of 3D environmental models. First, a hierarchical searching scheme is combined with the octree-based ICP algorithm. Second, an early-warning mechanism is used to perceive the local minimum problem. Third, a heuristic escape scheme based on sampled potential transformation vectors is used to avoid local minima and achieve optimal registration. Experiments involving one unmanned aerial vehicle and one unmanned surface vehicle were conducted to verify the proposed technique. The experimental results were compared with those of normal ICP registration algorithms to demonstrate the superior performance of the proposed method. PMID:26891298

Ligand-based 3D QSAR analysis of reactivation potency of mono- and bis-pyridinium aldoximes toward VX-inhibited rat acetylcholinesterase.

PubMed

Dolezal, Rafael; Korabecny, Jan; Malinak, David; Honegr, Jan; Musilek, Kamil; Kuca, Kamil

2015-03-01

To predict unknown reactivation potencies of 12 mono- and bis-pyridinium aldoximes for VX-inhibited rat acetylcholinesterase (rAChE), three-dimensional quantitative structure-activity relationship (3D QSAR) analysis has been carried out. Utilizing molecular interaction fields (MIFs) calculated by molecular mechanical (MMFF94) and quantum chemical (B3LYP/6-31G*) methods, two satisfactory ligand-based CoMFA models have been developed: 1. R(2)=0.9989, Q(LOO)(2)=0.9090, Q(LTO)(2)=0.8921, Q(LMO(20%))(2)=0.8853, R(ext)(2)=0.9259, SDEP(ext)=6.8938; 2. R(2)=0.9962, Q(LOO)(2)=0.9368, Q(LTO)(2)=0.9298, Q(LMO(20%))(2)=0.9248, R(ext)(2)=0.8905, SDEP(ext)=6.6756. High statistical significance of the 3D QSAR models has been achieved through the application of several data noise reduction techniques (i.e. smart region definition SRD, fractional factor design FFD, uninformative/iterative variable elimination UVE/IVE) on the original MIFs. Besides the ligand-based CoMFA models, an alignment molecular set constructed by flexible molecular docking has been also studied. The contour maps as well as the predicted reactivation potencies resulting from 3D QSAR analyses help better understand which structural features are associated with increased reactivation potency of studied compounds. Copyright © 2014 Elsevier Inc. All rights reserved.

User Acceptance of a Haptic Interface for Learning Anatomy

ERIC Educational Resources Information Center

Yeom, Soonja; Choi-Lundberg, Derek; Fluck, Andrew; Sale, Arthur

2013-01-01

Visualizing the structure and relationships in three dimensions (3D) of organs is a challenge for students of anatomy. To provide an alternative way of learning anatomy engaging multiple senses, we are developing a force-feedback (haptic) interface for manipulation of 3D virtual organs, using design research methodology, with iterations of system…

Calculation of plasma dielectric response in inhomogeneous magnetic field near electron cyclotron resonance

NASA Astrophysics Data System (ADS)

Evstatiev, Evstati; Svidzinski, Vladimir; Spencer, Andy; Galkin, Sergei

2014-10-01

Full wave 3-D modeling of RF fields in hot magnetized nonuniform plasma requires calculation of nonlocal conductivity kernel describing the dielectric response of such plasma to the RF field. In many cases, the conductivity kernel is a localized function near the test point which significantly simplifies numerical solution of the full wave 3-D problem. Preliminary results of feasibility analysis of numerical calculation of the conductivity kernel in a 3-D hot nonuniform magnetized plasma in the electron cyclotron frequency range will be reported. This case is relevant to modeling of ECRH in ITER. The kernel is calculated by integrating the linearized Vlasov equation along the unperturbed particle's orbits. Particle's orbits in the nonuniform equilibrium magnetic field are calculated numerically by one of the Runge-Kutta methods. RF electric field is interpolated on a specified grid on which the conductivity kernel is discretized. The resulting integrals in the particle's initial velocity and time are then calculated numerically. Different optimization approaches of the integration are tested in this feasibility analysis. Work is supported by the U.S. DOE SBIR program.

Variational Iterative Refinement Source Term Estimation Algorithm Assessment for Rural and Urban Environments

NASA Astrophysics Data System (ADS)

Delle Monache, L.; Rodriguez, L. M.; Meech, S.; Hahn, D.; Betancourt, T.; Steinhoff, D.

2016-12-01

It is necessary to accurately estimate the initial source characteristics in the event of an accidental or intentional release of a Chemical, Biological, Radiological, or Nuclear (CBRN) agent into the atmosphere. The accurate estimation of the source characteristics are important because many times they are unknown and the Atmospheric Transport and Dispersion (AT&D) models rely heavily on these estimates to create hazard assessments. To correctly assess the source characteristics in an operational environment where time is critical, the National Center for Atmospheric Research (NCAR) has developed a Source Term Estimation (STE) method, known as the Variational Iterative Refinement STE algorithm (VIRSA). VIRSA consists of a combination of modeling systems. These systems include an AT&D model, its corresponding STE model, a Hybrid Lagrangian-Eulerian Plume Model (H-LEPM), and its mathematical adjoint model. In an operational scenario where we have information regarding the infrastructure of a city, the AT&D model used is the Urban Dispersion Model (UDM) and when using this model in VIRSA we refer to the system as uVIRSA. In all other scenarios where we do not have the city infrastructure information readily available, the AT&D model used is the Second-order Closure Integrated PUFF model (SCIPUFF) and the system is referred to as sVIRSA. VIRSA was originally developed using SCIPUFF 2.4 for the Defense Threat Reduction Agency and integrated into the Hazard Prediction and Assessment Capability and Joint Program for Information Systems Joint Effects Model. The results discussed here are the verification and validation of the upgraded system with SCIPUFF 3.0 and the newly implemented UDM capability. To verify uVIRSA and sVIRSA, synthetic concentration observation scenarios were created in urban and rural environments and the results of this verification are shown. Finally, we validate the STE performance of uVIRSA using scenarios from the Joint Urban 2003 (JU03) experiment, which was held in Oklahoma City and also validate the performance of sVIRSA using scenarios from the FUsing Sensor Integrated Observing Network (FUSION) Field Trial 2007 (FFT07), held at Dugway Proving Grounds in rural Utah.

Foldover-free shape deformation for biomedicine.

PubMed

Yu, Hongchuan; Zhang, Jian J; Lee, Tong-Yee

2014-04-01

Shape deformation as a fundamental geometric operation underpins a wide range of applications, from geometric modelling, medical imaging to biomechanics. In medical imaging, for example, to quantify the difference between two corresponding images, 2D or 3D, one needs to find the deformation between both images. However, such deformations, particularly deforming complex volume datasets, are prone to the problem of foldover, i.e. during deformation, the required property of one-to-one mapping no longer holds for some points. Despite numerous research efforts, the construction of a mathematically robust foldover-free solution subject to positional constraints remains open. In this paper, we address this challenge by developing a radial basis function-based deformation method. In particular we formulate an effective iterative mechanism which ensures the foldover-free property is satisfied all the time. The experimental results suggest that the resulting deformations meet the internal positional constraints. In addition to radial basis functions, this iterative mechanism can also be incorporated into other deformation approaches, e.g. B-spline based FFDs, to develop different deformable approaches for various applications. Crown Copyright © 2013. Published by Elsevier Inc. All rights reserved.

Effects of the approximations of light propagation on quantitative photoacoustic tomography using two-dimensional photon diffusion equation and linearization

NASA Astrophysics Data System (ADS)

Okawa, Shinpei; Hirasawa, Takeshi; Kushibiki, Toshihiro; Ishihara, Miya

2017-12-01

Quantitative photoacoustic tomography (QPAT) employing a light propagation model will play an important role in medical diagnoses by quantifying the concentration of hemoglobin or a contrast agent. However, QPAT by the light propagation model with the three-dimensional (3D) radiative transfer equation (RTE) requires a huge computational load in the iterative forward calculations involved in the updating process to reconstruct the absorption coefficient. The approximations of the light propagation improve the efficiency of the image reconstruction for the QPAT. In this study, we compared the 3D/two-dimensional (2D) photon diffusion equation (PDE) approximating 3D RTE with the Monte Carlo simulation based on 3D RTE. Then, the errors in a 2D PDE-based linearized image reconstruction caused by the approximations were quantitatively demonstrated and discussed in the numerical simulations. It was clearly observed that the approximations affected the reconstructed absorption coefficient. The 2D PDE-based linearized algorithm succeeded in the image reconstruction of the region with a large absorption coefficient in the 3D phantom. The value reconstructed in the phantom experiment agreed with that in the numerical simulation, so that it was validated that the numerical simulation of the image reconstruction predicted the relationship between the true absorption coefficient of the target in the 3D medium and the reconstructed value with the 2D PDE-based linearized algorithm. Moreover, the the true absorption coefficient in 3D medium was estimated from the 2D reconstructed image on the basis of the prediction by the numerical simulation. The estimation was successful in the phantom experiment, although some limitations were revealed.

Calculated electric dipole moment of NiH X2Delta

NASA Technical Reports Server (NTRS)

Walch, S.; Bauschlicher, C. W., Jr.; Langhoff, S. R.

1985-01-01

A calculated dipole moment of 2.39 D at R sub e = 2.79 a sub 0 is reported, obtained from complete active space SCF/configuration interaction calculations plus one natural orbital iteration. The calculation is in good agreement with the experimental value of 2.4 + or - 0.1 D measured for the lowest vibrational level. In agreement with Gray et al. (1985), it is found that the dipole moment is strongly correlated with the 3d electron population; the good agreement with experiment thus provides verification of the mixed state model of NiH. It is concluded that the electric dipole moment of NiH is a sensitive test of the quality of the NiH wave function.

Combined registration of 3D tibia and femur implant models in 3D magnetic resonance images

NASA Astrophysics Data System (ADS)

Englmeier, Karl-Hans; Siebert, Markus; von Eisenhart-Rothe, Ruediger; Graichen, Heiko

2008-03-01

The most frequent reasons for revision of total knee arthroplasty are loosening and abnormal axial alignment leading to an unphysiological kinematic of the knee implant. To get an idea about the postoperative kinematic of the implant, it is essential to determine the position and orientation of the tibial and femoral prosthesis. Therefore we developed a registration method for fitting 3D CAD-models of knee joint prostheses into an 3D MR image. This rigid registration is the basis for a quantitative analysis of the kinematics of knee implants. Firstly the surface data of the prostheses models are converted into a voxel representation; a recursive algorithm determines all boundary voxels of the original triangular surface data. Secondly an initial preconfiguration of the implants by the user is still necessary for the following step: The user has to perform a rough preconfiguration of both remaining prostheses models, so that the fine matching process gets a reasonable starting point. After that an automated gradient-based fine matching process determines the best absolute position and orientation: This iterative process changes all 6 parameters (3 rotational- and 3 translational parameters) of a model by a minimal amount until a maximum value of the matching function is reached. To examine the spread of the final solutions of the registration, the interobserver variability was measured in a group of testers. This variability, calculated by the relative standard deviation, improved from about 50% (pure manual registration) to 0.5% (rough manual preconfiguration and subsequent fine registration with the automatic fine matching process).

Patient-specific pediatric silicone heart valve models based on 3D ultrasound

NASA Astrophysics Data System (ADS)

Ilina, Anna; Lasso, Andras; Jolley, Matthew A.; Wohler, Brittany; Nguyen, Alex; Scanlan, Adam; Baum, Zachary; McGowan, Frank; Fichtinger, Gabor

2017-03-01

PURPOSE: Patient-specific heart and valve models have shown promise as training and planning tools for heart surgery, but physically realistic valve models remain elusive. Available proprietary, simulation-focused heart valve models are generic adult mitral valves and do not allow for patient-specific modeling as may be needed for rare diseases such as congenitally abnormal valves. We propose creating silicone valve models from a 3D-printed plastic mold as a solution that can be adapted to any individual patient and heart valve at a fraction of the cost of direct 3D-printing using soft materials. METHODS: Leaflets of a pediatric mitral valve, a tricuspid valve in a patient with hypoplastic left heart syndrome, and a complete atrioventricular canal valve were segmented from ultrasound images. A custom software was developed to automatically generate molds for each valve based on the segmentation. These molds were 3D-printed and used to make silicone valve models. The models were designed with cylindrical rims of different sizes surrounding the leaflets, to show the outline of the valve and add rigidity. Pediatric cardiac surgeons practiced suturing on the models and evaluated them for use as surgical planning and training tools. RESULTS: Five out of six surgeons reported that the valve models would be very useful as training tools for cardiac surgery. In this first iteration of valve models, leaflets were felt to be unrealistically thick or stiff compared to real pediatric leaflets. A thin tube rim was preferred for valve flexibility. CONCLUSION: The valve models were well received and considered to be valuable and accessible tools for heart valve surgery training. Further improvements will be made based on surgeons' feedback.

A new approach to three-dimensional neutron transport solution based on the method of characteristics and linear axial approximation

NASA Astrophysics Data System (ADS)

Zheng, Youqi; Choi, Sooyoung; Lee, Deokjung

2017-12-01

A new approach based on the method of characteristics (MOC) is proposed to solve the neutron transport equation. A new three-dimensional (3D) spatial discretization is applied to avoid the instability issue of the transverse leakage iteration of the traditional 2D/1D approach. In this new approach, the axial and radial variables are discretized in two different ways: the linear expansion is performed in the axial direction, then, the 3D solution of the angular flux is transformed to be the planar solution of 2D angular expansion moments, which are solved by the planar MOC sweeping. Based on the boundary and interface continuity conditions, the 2D expansion moment solution is equivalently transformed to be the solution of the axially averaged angular flux. Using the piecewise averaged angular flux at the top and bottom surfaces of 3D meshes, the planes are coupled to give the 3D angular flux distribution. The 3D CMFD linear system is established from the surface net current of every 3D pin-mesh to accelerate the convergence of power iteration. The STREAM code is extended to be capable of handling 3D problems based on the new approach. Several benchmarks are tested to verify its feasibility and accuracy, including the 3D homogeneous benchmarks and heterogeneous benchmarks. The computational sensitivity is discussed. The results show good accuracy in all tests. With the CMFD acceleration, the convergence is stable. In addition, a pin-cell problem with void gap is calculated. This shows the advantage compared to the traditional 2D/1D MOC methods.

Three Dimensional P-Wave Velocity Structure Beneath Eastern Turkey by Local Earthquake Tomography (LET) Method

NASA Astrophysics Data System (ADS)

Teoman, U. M.; Turkelli, N.; Gok, R.

2005-12-01

Recently, crustal structure and the tectonic evolution of Eastern Turkey region was extensively studied in the context of Eastern Turkey Seismic Experiment (ETSE) from late 1999 to August 2001. Collision of the Arabian and Eurasian plates has been occurring along East Anatolian Fault Zone (EAFZ) and the Bitlis Suture, which made Eastern Turkey an ideal platform for scientific research. High quality local earthquake data from the ETSE seismic network were used in order to determine the 3-D P-wave velocity structure of upper crust for Eastern Turkey. Within the 32-station network, 524 well locatable earthquakes with azimuthal gaps < 200° and number of P-wave observations > 8 (corresponding to 6842 P-phase readings) were selected from the initial data set and simultaneously inverted. 1-D reference velocity model was derived by an iterative 1-D velocity inversion including the updated hypocenters and the station delays. The following 3-D tomographic inversion was iteratively performed by SIMULPS14 algorithm in a ``damped least-squares'' sense using the appropriate ray tracing technique, model parametrization and control parameters. As far as resolution is concerned, S waves were not included in this study due to strong attenuation, insufficient number of S phase readings and higher picking errors with respect to P phases. Several tests with the synthetic data were conducted to assess the solution quality, suggesting that the velocity structure is well resolved down to ~17km. Overall,resulting 3-D P-wave velocity model led to a more reliable hypocenter determination indicated by reduced event scattering and a significant reduction of %50 both in variance and residual (rms) values.With the influence of improved velocity model, average location errors did not exceed ~1.5km in horizontal and ~4km in vertical directions. Tomographic images revealed the presence of lateral velocity variations in Eastern Turkey. Existence of relatively low velocity zones (5.6 < Vp < 6.0 km/sec) along most of the vertical profiles possibly indicates the influence of major tectonic structures such as North Anatolian Fault Zone (NAFZ), East Anatolian Fault Zone (EAFZ) and the Bitlis thrust belt correlated with the seismicity. Low velocity anomalies extend deeper along EAFZ down to ~15km compared to a depth of ~10km along NAFZ. Arabian plate is generally marked by relatively higher velocities (Vp > 6.2 km/sec) in 10-15 km depth range.

Enhanced understanding of non-axisymmetric intrinsic and controlled field impacts in tokamaks

DOE Office of Scientific and Technical Information (OSTI.GOV)

In, Y.; Park, J. -K.; Jeon, Y. M.

Here, an extensive study of intrinsic and controlled non-axisymmetric field (δB) impacts in KSTAR has enhanced the understanding about non-axisymmetric field physics and its implications, in particular, on resonant magnetic perturbation (RMP) physics and power threshold (P th) for L–H transition. The n=1 intrinsic non-axisymmetric field in KSTAR was measured to remain as low as δB/B 0 ~ 4×10 –5 even at high-beta plasmas (β N ~ 2), which corresponds to approximately 20% below the targeted ITER tolerance level. As for the RMP edge-localized-modes (ELM) control, robust n=1 RMP ELM-crash-suppression has been not only sustained for more than ~90 τ E, but also confirmed to be compatible with rotating RMP. An optimal window of radial position of lower X-point (i.e. R x =more » $$1.44\\pm 0.02\\,$$ m) proved to be quite critical to reach full n=1 RMP-driven ELM-crash-suppression, while a constraint of the safety factor could be relaxed (q 95 = 5 $$\\pm $$ 0.25). A more encouraging finding was that even when R x cannot be positioned in the optimal window, another systematic scan in the vicinity of the previously optimal R x allows for a new optimal window with relatively small variations of plasma parameters. Also, we have addressed the importance of optimal phasing (i.e. toroidal phase difference between adjacent rows) for n=1 RMP-driven ELM control, consistent with an ideal plasma response modeling which could predict phasing-dependent ELM suppression windows. In support of ITER RMP study, intentionally misaligned RMPs have been found to be quite effective during ELM-mitigation stage in lowering the peaks of divertor heat flux, as well as in broadening the 'wet' areas. Besides, a systematic survey of P th dependence on non-axisymmetric field has revealed the potential limit of the merit of low intrinsic non-axisymmetry. Considering that the ITER RMP coils are composed of 3-rows, just like in KSTAR, further 3D physics study in KSTAR is expected to help us minimize the uncertainties of the ITER RMP coils, as well as establish an optimal 3D configuration for ITER and future reactors.« less

Enhanced understanding of non-axisymmetric intrinsic and controlled field impacts in tokamaks

NASA Astrophysics Data System (ADS)

In, Y.; Park, J.-K.; Jeon, Y. M.; Kim, J.; Park, G. Y.; Ahn, J.-W.; Loarte, A.; Ko, W. H.; Lee, H. H.; Yoo, J. W.; Juhn, J. W.; Yoon, S. W.; Park, H.; Physics Task Force in KSTAR, 3D

2017-11-01

An extensive study of intrinsic and controlled non-axisymmetric field (δB) impacts in KSTAR has enhanced the understanding about non-axisymmetric field physics and its implications, in particular, on resonant magnetic perturbation (RMP) physics and power threshold (P th) for L-H transition. The n  =  1 intrinsic non-axisymmetric field in KSTAR was measured to remain as low as δB/B 0 ~ 4  ×  10-5 even at high-beta plasmas (β N ~ 2), which corresponds to approximately 20% below the targeted ITER tolerance level. As for the RMP edge-localized-modes (ELM) control, robust n  =  1 RMP ELM-crash-suppression has been not only sustained for more than ~90 τ E, but also confirmed to be compatible with rotating RMP. An optimal window of radial position of lower X-point (i.e. R x   =  1.44+/- 0.02 m) proved to be quite critical to reach full n  =  1 RMP-driven ELM-crash-suppression, while a constraint of the safety factor could be relaxed (q 95  =  5 +/- 0.25). A more encouraging finding was that even when R x cannot be positioned in the optimal window, another systematic scan in the vicinity of the previously optimal R x allows for a new optimal window with relatively small variations of plasma parameters. Also, we have addressed the importance of optimal phasing (i.e. toroidal phase difference between adjacent rows) for n  =  1 RMP-driven ELM control, consistent with an ideal plasma response modeling which could predict phasing-dependent ELM suppression windows. In support of ITER RMP study, intentionally misaligned RMPs have been found to be quite effective during ELM-mitigation stage in lowering the peaks of divertor heat flux, as well as in broadening the ‘wet’ areas. Besides, a systematic survey of P th dependence on non-axisymmetric field has revealed the potential limit of the merit of low intrinsic non-axisymmetry. Considering that the ITER RMP coils are composed of 3-rows, just like in KSTAR, further 3D physics study in KSTAR is expected to help us minimize the uncertainties of the ITER RMP coils, as well as establish an optimal 3D configuration for ITER and future reactors.

Enhanced understanding of non-axisymmetric intrinsic and controlled field impacts in tokamaks

DOE PAGES

In, Y.; Park, J. -K.; Jeon, Y. M.; ...

2017-08-24

Here, an extensive study of intrinsic and controlled non-axisymmetric field (δB) impacts in KSTAR has enhanced the understanding about non-axisymmetric field physics and its implications, in particular, on resonant magnetic perturbation (RMP) physics and power threshold (P th) for L–H transition. The n=1 intrinsic non-axisymmetric field in KSTAR was measured to remain as low as δB/B 0 ~ 4×10 –5 even at high-beta plasmas (β N ~ 2), which corresponds to approximately 20% below the targeted ITER tolerance level. As for the RMP edge-localized-modes (ELM) control, robust n=1 RMP ELM-crash-suppression has been not only sustained for more than ~90 τ E, but also confirmed to be compatible with rotating RMP. An optimal window of radial position of lower X-point (i.e. R x =more » $$1.44\\pm 0.02\\,$$ m) proved to be quite critical to reach full n=1 RMP-driven ELM-crash-suppression, while a constraint of the safety factor could be relaxed (q 95 = 5 $$\\pm $$ 0.25). A more encouraging finding was that even when R x cannot be positioned in the optimal window, another systematic scan in the vicinity of the previously optimal R x allows for a new optimal window with relatively small variations of plasma parameters. Also, we have addressed the importance of optimal phasing (i.e. toroidal phase difference between adjacent rows) for n=1 RMP-driven ELM control, consistent with an ideal plasma response modeling which could predict phasing-dependent ELM suppression windows. In support of ITER RMP study, intentionally misaligned RMPs have been found to be quite effective during ELM-mitigation stage in lowering the peaks of divertor heat flux, as well as in broadening the 'wet' areas. Besides, a systematic survey of P th dependence on non-axisymmetric field has revealed the potential limit of the merit of low intrinsic non-axisymmetry. Considering that the ITER RMP coils are composed of 3-rows, just like in KSTAR, further 3D physics study in KSTAR is expected to help us minimize the uncertainties of the ITER RMP coils, as well as establish an optimal 3D configuration for ITER and future reactors.« less

Some Advanced Concepts in Discrete Aerodynamic Sensitivity Analysis

NASA Technical Reports Server (NTRS)

Taylor, Arthur C., III; Green, Lawrence L.; Newman, Perry A.; Putko, Michele M.

2001-01-01

An efficient incremental-iterative approach for differentiating advanced flow codes is successfully demonstrated on a 2D inviscid model problem. The method employs the reverse-mode capability of the automatic- differentiation software tool ADIFOR 3.0, and is proven to yield accurate first-order aerodynamic sensitivity derivatives. A substantial reduction in CPU time and computer memory is demonstrated in comparison with results from a straight-forward, black-box reverse- mode application of ADIFOR 3.0 to the same flow code. An ADIFOR-assisted procedure for accurate second-order aerodynamic sensitivity derivatives is successfully verified on an inviscid transonic lifting airfoil example problem. The method requires that first-order derivatives are calculated first using both the forward (direct) and reverse (adjoint) procedures; then, a very efficient non-iterative calculation of all second-order derivatives can be accomplished. Accurate second derivatives (i.e., the complete Hessian matrices) of lift, wave-drag, and pitching-moment coefficients are calculated with respect to geometric- shape, angle-of-attack, and freestream Mach number

Refractive and relativistic effects on ITER low field side reflectometer design.

PubMed

Wang, G; Rhodes, T L; Peebles, W A; Harvey, R W; Budny, R V

2010-10-01

The ITER low field side reflectometer faces some unique design challenges, among which are included the effect of relativistic electron temperatures and refraction of probing waves. This paper utilizes GENRAY, a 3D ray tracing code, to investigate these effects. Using a simulated ITER operating scenario, characteristics of the reflected millimeter waves after return to the launch plane are quantified as a function of a range of design parameters, including antenna height, antenna diameter, and antenna radial position. Results for edge/SOL measurement with both O- and X-mode polarizations using proposed antennas are reported.

SU-C-209-02: 3D Fluoroscopic Image Generation From Patient-Specific 4DCBCT-Based Motion Models Derived From Clinical Patient Images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dhou, S; Cai, W; Hurwitz, M

Purpose: We develop a method to generate time varying volumetric images (3D fluoroscopic images) using patient-specific motion models derived from four-dimensional cone-beam CT (4DCBCT). Methods: Motion models are derived by selecting one 4DCBCT phase as a reference image, and registering the remaining images to it. Principal component analysis (PCA) is performed on the resultant displacement vector fields (DVFs) to create a reduced set of PCA eigenvectors that capture the majority of respiratory motion. 3D fluoroscopic images are generated by optimizing the weights of the PCA eigenvectors iteratively through comparison of measured cone-beam projections and simulated projections generated from the motionmore » model. This method was applied to images from five lung-cancer patients. The spatial accuracy of this method is evaluated by comparing landmark positions in the 3D fluoroscopic images to manually defined ground truth positions in the patient cone-beam projections. Results: 4DCBCT motion models were shown to accurately generate 3D fluoroscopic images when the patient cone-beam projections contained clearly visible structures moving with respiration (e.g., the diaphragm). When no moving anatomical structure was clearly visible in the projections, the 3D fluoroscopic images generated did not capture breathing deformations, and reverted to the reference image. For the subset of 3D fluoroscopic images generated from projections with visibly moving anatomy, the average tumor localization error and the 95th percentile were 1.6 mm and 3.1 mm respectively. Conclusion: This study showed that 4DCBCT-based 3D fluoroscopic images can accurately capture respiratory deformations in a patient dataset, so long as the cone-beam projections used contain visible structures that move with respiration. For clinical implementation of 3D fluoroscopic imaging for treatment verification, an imaging field of view (FOV) that contains visible structures moving with respiration should be selected. If no other appropriate structures are visible, the images should include the diaphragm. This project was supported, in part, through a Master Research Agreement with Varian Medical Systems, Inc, Palo Alto, CA.« less

Refraction Correction in 3D Transcranial Ultrasound Imaging

PubMed Central

Lindsey, Brooks D.; Smith, Stephen W.

2014-01-01

We present the first correction of refraction in three-dimensional (3D) ultrasound imaging using an iterative approach that traces propagation paths through a two-layer planar tissue model, applying Snell’s law in 3D. This approach is applied to real-time 3D transcranial ultrasound imaging by precomputing delays offline for several skull thicknesses, allowing the user to switch between three sets of delays for phased array imaging at the push of a button. Simulations indicate that refraction correction may be expected to increase sensitivity, reduce beam steering errors, and partially restore lost spatial resolution, with the greatest improvements occurring at the largest steering angles. Distorted images of cylindrical lesions were created by imaging through an acrylic plate in a tissue-mimicking phantom. As a result of correcting for refraction, lesions were restored to 93.6% of their original diameter in the lateral direction and 98.1% of their original shape along the long axis of the cylinders. In imaging two healthy volunteers, the mean brightness increased by 8.3% and showed no spatial dependency. PMID:24275538

Multi-scale modeling to relate Be surface temperatures, concentrations and molecular sputtering yields

NASA Astrophysics Data System (ADS)

Lasa, Ane; Safi, Elnaz; Nordlund, Kai

2015-11-01

Recent experiments and Molecular Dynamics (MD) simulations show erosion rates of Be exposed to deuterium (D) plasma varying with surface temperature and the correlated D concentration. Little is understood how these three parameters relate for Be surfaces, despite being essential for reliable prediction of impurity transport and plasma facing material lifetime in current (JET) and future (ITER) devices. A multi-scale exercise is presented here to relate Be surface temperatures, concentrations and sputtering yields. Kinetic Monte Carlo (MC) code MMonCa is used to estimate equilibrium D concentrations in Be at different temperatures. Then, mixed Be-D surfaces - that correspond to the KMC profiles - are generated in MD, to calculate Be-D molecular erosion yields due to D irradiation. With this new database implemented in the 3D MC impurity transport code ERO, modeling scenarios studying wall erosion, such as RF-induced enhanced limiter erosion or main wall surface temperature scans run at JET, can be revisited with higher confidence. Work supported by U.S. DOE under Contract DE-AC05-00OR22725.

2-D Fused Image Reconstruction approach for Microwave Tomography: a theoretical assessment using FDTD Model.

PubMed

Bindu, G; Semenov, S

2013-01-01

This paper describes an efficient two-dimensional fused image reconstruction approach for Microwave Tomography (MWT). Finite Difference Time Domain (FDTD) models were created for a viable MWT experimental system having the transceivers modelled using thin wire approximation with resistive voltage sources. Born Iterative and Distorted Born Iterative methods have been employed for image reconstruction with the extremity imaging being done using a differential imaging technique. The forward solver in the imaging algorithm employs the FDTD method of solving the time domain Maxwell's equations with the regularisation parameter computed using a stochastic approach. The algorithm is tested with 10% noise inclusion and successful image reconstruction has been shown implying its robustness.

Status of the Negative Ion Based Heating and Diagnostic Neutral Beams for ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schunke, B.; Bora, D.; Hemsworth, R.

2009-03-12

The current baseline of ITER foresees 2 Heating Neutral Beam (HNB's) systems based on negative ion technology, each accelerating to 1 MeV 40 A of D{sup -} and capable of delivering 16.5 MW of D{sup 0} to the ITER plasma, with a 3rd HNB injector foreseen as an upgrade option. In addition a dedicated Diagnostic Neutral Beam (DNB) accelerating 60 A of H{sup -} to 100 keV will inject {approx_equal}15 A equivalent of H{sup 0} for charge exchange recombination spectroscopy and other diagnostics. Recently the RF driven negative ion source developed by IPP Garching has replaced the filamented ion sourcemore » as the reference ITER design. The RF source developed at IPP, which is approximately a quarter scale of the source needed for ITER, is expected to have reduced caesium consumption compared to the filamented arc driven ion source. The RF driven source has demonstrated adequate accelerated D{sup -} and H{sup -} current densities as well as long-pulse operation. It is foreseen that the HNB's and the DNB will use the same negative ion source. Experiments with a half ITER-size ion source are on-going at IPP and the operation of a full-scale ion source will be demonstrated, at full power and pulse length, in the dedicated Ion Source Test Bed (ISTF), which will be part of the Neutral Beam Test Facility (NBTF), in Padua, Italy. This facility will carry out the necessary R and D for the HNB's for ITER and demonstrate operation of the full-scale HNB beamline. An overview of the current status of the neutral beam (NB) systems and the chosen configuration will be given and the ongoing integration effort into the ITER plant will be highlighted. It will be demonstrated how installation and maintenance logistics have influenced the design, notably the top access scheme facilitating access for maintenance and installation. The impact of the ITER Design Review and recent design change requests (DCRs) will be briefly discussed, including start-up and commissioning issues. The low current hydrogen phase now envisaged for start-up imposed specific requirements for operating the HNB's at full beam power. It has been decided to address the shinethrough issue by installing wall armour protection, which increases the operational space in all scenarios. Other NB related issues identified by the Design Review process will be discussed and the possible changes to the ITER baseline indicated.« less

Performance Analysis of Polymorphous Computing Architectures

DTIC Science & Technology

2001-01-01

G H F Proc 5 : 4 : 3 11 1 Figure 3. Self-timed execution. D C B F G H E D B H EA CG...F D C B F G H E D B H EA CG F AProc 1 Proc 2 Proc 3 Proc 4 Proc 5 185 cution pattern when the application graph in Figure 2 is executed in a self...transform, a quadra- E Figure 10. Self-timed execution with first-iteration actors denoted by T. D B H E CG F D C B F G H E D B H EA CG F A 18 T T T

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hill, K W; Delgado-Aprico, L; Johnson, D

Imaging XCS arrays are being developed as a US-ITER activity for Doppler measurement of Ti and v profiles of impurities (W, Kr, Fe) with ~7 cm (a/30) and 10-100 ms resolution in ITER. The imaging XCS, modeled after a PPPL-MIT instrument on Alcator C-Mod, uses a spherically bent crystal and 2d x-ray detectors to achieve high spectral resolving power (E/dE>6000) horizontally and spatial imaging vertically. Two arrays will measure Ti and both poloidal and toroidal rotation velocity profiles. Measurement of many spatial chords permits tomographic inversion for inference of local parameters. The instrument design, predictions of performance, and results frommore » C-Mod will be presented.« less

Three-dimensional modeling of plasma edge transport and divertor fluxes during application of resonant magnetic perturbations on ITER

NASA Astrophysics Data System (ADS)

Schmitz, O.; Becoulet, M.; Cahyna, P.; Evans, T. E.; Feng, Y.; Frerichs, H.; Loarte, A.; Pitts, R. A.; Reiser, D.; Fenstermacher, M. E.; Harting, D.; Kirschner, A.; Kukushkin, A.; Lunt, T.; Saibene, G.; Reiter, D.; Samm, U.; Wiesen, S.

2016-06-01

Results from three-dimensional modeling of plasma edge transport and plasma-wall interactions during application of resonant magnetic perturbation (RMP) fields for control of edge-localized modes in the ITER standard 15 MA Q  =  10 H-mode are presented. The full 3D plasma fluid and kinetic neutral transport code EMC3-EIRENE is used for the modeling. Four characteristic perturbed magnetic topologies are considered and discussed with reference to the axisymmetric case without RMP fields. Two perturbation field amplitudes at full and half of the ITER ELM control coil current capability using the vacuum approximation are compared to a case including a strongly screening plasma response. In addition, a vacuum field case at high q 95  =  4.2 featuring increased magnetic shear has been modeled. Formation of a three-dimensional plasma boundary is seen for all four perturbed magnetic topologies. The resonant field amplitudes and the effective radial magnetic field at the separatrix define the shape and extension of the 3D plasma boundary. Opening of the magnetic field lines from inside the separatrix establishes scrape-off layer-like channels of direct parallel particle and heat flux towards the divertor yielding a reduction of the main plasma thermal and particle confinement. This impact on confinement is most accentuated at full RMP current and is strongly reduced when screened RMP fields are considered, as well as for the reduced coil current cases. The divertor fluxes are redirected into a three-dimensional pattern of helical magnetic footprints on the divertor target tiles. At maximum perturbation strength, these fingers stretch out as far as 60 cm across the divertor targets, yielding heat flux spreading and the reduction of peak heat fluxes by 30%. However, at the same time substantial and highly localized heat fluxes reach divertor areas well outside of the axisymmetric heat flux decay profile. Reduced RMP amplitudes due to screening or reduced RMP coil current yield a reduction of the width of the divertor flux spreading to about 20-25 cm and cause increased peak heat fluxes back to values similar to those in the axisymmetric case. The dependencies of these features on the divertor recycling regime and the perpendicular transport assumptions, as well as toroidal averaged effects mimicking rotation of the RMP field, are discussed in the paper.

17th Workshop on MHD Stability Control: addressing the disruption challenge for ITER

NASA Astrophysics Data System (ADS)

Buttery, Richard

2013-08-01

This annual workshop on magnetohydrodynamic stability control was held on 5-7 November 2012 at Columbia University in the city of New York, in the aftermath of a violent hydrodynamic instability event termed 'Hurricane Sandy'. Despite these challenging circumstances, Columbia University managed an excellent meeting, enabling the full participation of the community. This Workshop has been held since 1996 to help in the development of understanding and control of magnetohydrodynamic (MHD) instabilities for future fusion reactors. It covers a wide range of stability topics—from disruptions, to tearing modes, error fields, edge-localized modes (ELMs), resistive wall modes (RWMs) and ideal MHD—spanning many device types (tokamaks, stellarators and reversed field pinches) to identify commonalities in the physics and a means of control. The theme for 2012 was 'addressing the disruption challenge for ITER', and thus the first day had a heavy focus on both the avoidance and mitigation of disruptions in ITER. Key elements included understanding how to apply 3D fields to maintain stability, as well as managing the disruption process itself through mitigating loads in the thermal quench and handling so called 'runaway electrons'. This culminated in a panel discussion on the disruption mitigation strategy for ITER, which noted that heat load asymmetries during the thermal quench appear to be an artifact of MHD processes, and that runaway electron generation may be inevitable, suggesting research should focus on control and dissipation of the runaway beam. The workshop was combined this year with the annual US-Japan MHD Workshop, with a special section looking more deeply at 'Fundamentals of 3D Perturbed Equilibrium Control', with interesting sessions on 3D equilibrium reconstruction, RWM physics, novel control concepts such as non-magnetic sensing, adaptive control, q < 2 tokamak operation, and the effects of flow. The final day turned to tearing mode interactions, exploring the state of the art in 3D modeling, and innovative means of control through application of electromagnetic torques, use of electron cyclotron current drive and even the idea of electrostatic current drive. This concluded with a second panel discussion on the disruption avoidance strategy in ITER, which commented on the important role played by energetic particles in stability, ideas of active stability sensing and ways to progress 3D reconstruction. In this special section of Plasma Physics and Controlled Fusion , we present several of the invited and contributed papers from the 2012 workshop, which have been subject to the normal refereeing procedures of the journal. These give a sense of the exceptional quality of the presentations at this workshop, which may be found at: http://fusion.gat.com/conferences/mhd12/. The Program Committee deeply appreciates the participation and support our community continues to show in this workshop, which provides an unparalleled opportunity for in-depth discussion of MHD issues. We would also like to thank our hosts Columbia University, and in particular Professor Gerald Navratil, for outstanding support and facilities in the face of Hurricane Sandy's adversity. The meeting thanked outgoing Program Chair, Dr Richard Buttery from General Atomics, and welcomed next year's Program Chair, Professor David Maurer from Auburn University. The next meeting will be held in Santa Fe 18-20 November 2013.

The Battlefield Environment Division Modeling Framework (BMF). Part 1: Optimizing the Atmospheric Boundary Layer Environment Model for Cluster Computing

DTIC Science & Technology

2014-02-01

idle waiting for the wavefront to reach it. To overcome this, Reeve et al. (2001) 3 developed a scheme in analogy to the red-black Gauss - Seidel iterative ...understandable procedure calls. Parallelization of the SIMPLE iterative scheme with SIP used a red-black scheme similar to the red-black Gauss - Seidel ...scheme, the SIMPLE method, for pressure-velocity coupling. The result is a slowing convergence of the outer iterations . The red-black scheme excites a 2

An integrated geophysical study of the lithospheric structure beneath Libya

NASA Astrophysics Data System (ADS)

Brown, Wesley A.

This doctoral dissertation constitutes an integrated geophysical investigation of the lithospheric structure in the region of Libya. It is separated into three sections, each of which will be submitted to different scientific journals for publication. In the first part of the study, I utilized a seamless mosaicking approach based on the commercial Environment for Visualizing Images (ENVI) software package to create mosaics of two geologically interesting portions of Libya. In this study I present a step by step method of mosaicking Landsat 4 satellite images. Firstly, I performed histogram matching to give images the same color scale, then I used a cutline feathering technique to blend suture areas and finally I overlaid the images to form the two mosaics. The resulting mosaics were then combined with structural features and the seismicity map of the area. The resulting mosaics were proven to be useful in identifying recently active faults and shows great potential for verification of other faults and in natural hazard assessment. For the second portion of my research, I made use of over 6,000 free air corrected gravity data in conjunction with other geological and geophysical data to develop a 3D density model for northern Libya. I used a gravity modeling program (SURFGRAV) to develop the 3D density model by manipulating it to accurately predict large areas of Free Air anomaly shown in the data. The residual gravity anomaly values were calculated by subtracting predicted Free Air anomaly from the observed Free Air anomaly. The results were satisfactory for uplifted areas of Libya while there were significant mismatches in basin areas. The density model was iterated and used as a starting model for the final portion of the study. In the last part of this research, I used the Nafe-Drake relationship along with other geological data to convert the 3D density model to a 3D velocity model (LIBYA3D) for the region. Two earthquakes having source receiver paths sampling much of the modeled area were used to perform 1D and 1.5D validation tests, and the results were compared to those from previous studies. The results showed that the new 3D velocity model is valid and superior to the global model. However, until there is sufficient earthquake data acquired, and we are able to perform 2D and 3D modeling we may not be able to see the true improvement of LIBYA3D as compared to the other regional models.

Parallel computation of fluid-structural interactions using high resolution upwind schemes

NASA Astrophysics Data System (ADS)

Hu, Zongjun

An efficient and accurate solver is developed to simulate the non-linear fluid-structural interactions in turbomachinery flutter flows. A new low diffusion E-CUSP scheme, Zha CUSP scheme, is developed to improve the efficiency and accuracy of the inviscid flux computation. The 3D unsteady Navier-Stokes equations with the Baldwin-Lomax turbulence model are solved using the finite volume method with the dual-time stepping scheme. The linearized equations are solved with Gauss-Seidel line iterations. The parallel computation is implemented using MPI protocol. The solver is validated with 2D cases for its turbulence modeling, parallel computation and unsteady calculation. The Zha CUSP scheme is validated with 2D cases, including a supersonic flat plate boundary layer, a transonic converging-diverging nozzle and a transonic inlet diffuser. The Zha CUSP2 scheme is tested with 3D cases, including a circular-to-rectangular nozzle, a subsonic compressor cascade and a transonic channel. The Zha CUSP schemes are proved to be accurate, robust and efficient in these tests. The steady and unsteady separation flows in a 3D stationary cascade under high incidence and three inlet Mach numbers are calculated to study the steady state separation flow patterns and their unsteady oscillation characteristics. The leading edge vortex shedding is the mechanism behind the unsteady characteristics of the high incidence separated flows. The separation flow characteristics is affected by the inlet Mach number. The blade aeroelasticity of a linear cascade with forced oscillating blades is studied using parallel computation. A simplified two-passage cascade with periodic boundary condition is first calculated under a medium frequency and a low incidence. The full scale cascade with 9 blades and two end walls is then studied more extensively under three oscillation frequencies and two incidence angles. The end wall influence and the blade stability are studied and compared under different frequencies and incidence angles. The Zha CUSP schemes are the first time to be applied in moving grid systems and 2D and 3D calculations. The implicit Gauss-Seidel iteration with dual time stepping is the first time to be used for moving grid systems. The NASA flutter cascade is the first time to be calculated in full scale.

In-vessel tritium retention and removal in ITER

NASA Astrophysics Data System (ADS)

Federici, G.; Anderl, R. A.; Andrew, P.; Brooks, J. N.; Causey, R. A.; Coad, J. P.; Cowgill, D.; Doerner, R. P.; Haasz, A. A.; Janeschitz, G.; Jacob, W.; Longhurst, G. R.; Nygren, R.; Peacock, A.; Pick, M. A.; Philipps, V.; Roth, J.; Skinner, C. H.; Wampler, W. R.

Tritium retention inside the vacuum vessel has emerged as a potentially serious constraint in the operation of the International Thermonuclear Experimental Reactor (ITER). In this paper we review recent tokamak and laboratory data on hydrogen, deuterium and tritium retention for materials and conditions which are of direct relevance to the design of ITER. These data, together with significant advances in understanding the underlying physics, provide the basis for modelling predictions of the tritium inventory in ITER. We present the derivation, and discuss the results, of current predictions both in terms of implantation and codeposition rates, and critically discuss their uncertainties and sensitivity to important design and operation parameters such as the plasma edge conditions, the surface temperature, the presence of mixed-materials, etc. These analyses are consistent with recent tokamak findings and show that codeposition of tritium occurs on the divertor surfaces primarily with carbon eroded from a limited area of the divertor near the strike zones. This issue remains an area of serious concern for ITER. The calculated codeposition rates for ITER are relatively high and the in-vessel tritium inventory limit could be reached, under worst assumptions, in approximately a week of continuous operation. We discuss the implications of these estimates on the design, operation and safety of ITER and present a strategy for resolving the issues. We conclude that as long as carbon is used in ITER - and more generically in any other next-step experimental fusion facility fuelled with tritium - the efficient control and removal of the codeposited tritium is essential. There is a critical need to develop and test in situ cleaning techniques and procedures that are beyond the current experience of present-day tokamaks. We review some of the principal methods that are being investigated and tested, in conjunction with the R&D work still required to extrapolate their applicability to ITER. Finally, unresolved issues are identified and recommendations are made on potential R&D avenues for their resolution.

Fnk Model of Cracking Rate Calculus for a Variable Asymmetry Coefficient

NASA Astrophysics Data System (ADS)

Roşca, Vâlcu; Miriţoiu, Cosmin Mihai

2017-12-01

In the process of materials fracture, a very important parameter to study is the cracking rate growth da/dN. This paper proposes an analysis of the cracking rate, in a comparative way, by using four mathematical models:1 - polynomial method, by using successive iterations according to the ASTM E647 standard; 2 - model that uses the Paris formula; 3 - Walker formula method; 4 - NASGRO model or Forman - Newman - Konig equation, abbreviated as FNK model. This model is used in the NASA programs studies. For the tests, CT type specimens were made from stainless steel, V2A class, 10TiNiCr175 mark, and loaded to a variable tensile test axial - eccentrically, with the asymmetry coefficients: R= 0.1, 0.3 and 0.5; at the 213K (-60°C) temperature. There are analyzed the cracking rates variations according to the above models, especially through FNK method, highlighting the asymmetry factor variation.

Alternative face models for 3D face registration

NASA Astrophysics Data System (ADS)

Salah, Albert Ali; Alyüz, Neşe; Akarun, Lale

2007-01-01

3D has become an important modality for face biometrics. The accuracy of a 3D face recognition system depends on a correct registration that aligns the facial surfaces and makes a comparison possible. The best results obtained so far use a one-to-all registration approach, which means each new facial surface is registered to all faces in the gallery, at a great computational cost. We explore the approach of registering the new facial surface to an average face model (AFM), which automatically establishes correspondence to the pre-registered gallery faces. Going one step further, we propose that using a couple of well-selected AFMs can trade-off computation time with accuracy. Drawing on cognitive justifications, we propose to employ category-specific alternative average face models for registration, which is shown to increase the accuracy of the subsequent recognition. We inspect thin-plate spline (TPS) and iterative closest point (ICP) based registration schemes under realistic assumptions on manual or automatic landmark detection prior to registration. We evaluate several approaches for the coarse initialization of ICP. We propose a new algorithm for constructing an AFM, and show that it works better than a recent approach. Finally, we perform simulations with multiple AFMs that correspond to different clusters in the face shape space and compare these with gender and morphology based groupings. We report our results on the FRGC 3D face database.

Richardson-Lucy/maximum likelihood image restoration algorithm for fluorescence microscopy: further testing.

PubMed

Holmes, T J; Liu, Y H

1989-11-15

A maximum likelihood based iterative algorithm adapted from nuclear medicine imaging for noncoherent optical imaging was presented in a previous publication with some initial computer-simulation testing. This algorithm is identical in form to that previously derived in a different way by W. H. Richardson "Bayesian-Based Iterative Method of Image Restoration," J. Opt. Soc. Am. 62, 55-59 (1972) and L. B. Lucy "An Iterative Technique for the Rectification of Observed Distributions," Astron. J. 79, 745-765 (1974). Foreseen applications include superresolution and 3-D fluorescence microscopy. This paper presents further simulation testing of this algorithm and a preliminary experiment with a defocused camera. The simulations show quantified resolution improvement as a function of iteration number, and they show qualitatively the trend in limitations on restored resolution when noise is present in the data. Also shown are results of a simulation in restoring missing-cone information for 3-D imaging. Conclusions are in support of the feasibility of using these methods with real systems, while computational cost and timing estimates indicate that it should be realistic to implement these methods. Itis suggested in the Appendix that future extensions to the maximum likelihood based derivation of this algorithm will address some of the limitations that are experienced with the nonextended form of the algorithm presented here.

Drift effects on the tokamak power scrape-off width

NASA Astrophysics Data System (ADS)

Meier, E. T.; Goldston, R. J.; Kaveeva, E. G.; Mordijck, S.; Rozhansky, V. A.; Senichenkov, I. Yu.; Voskoboynikov, S. P.

2015-11-01

Recent experimental analysis suggests that the scrape-off layer (SOL) heat flux width (λq) for ITER will be near 1 mm, sharply narrowing the planned operating window. In this work, motivated by the heuristic drift (HD) model, which predicts the observed inverse plasma current scaling, SOLPS-ITER is used to explore drift effects on λq. Modeling focuses on an H-mode DIII-D discharge. In initial results, target recycling is set to 90%, resulting in sheath-limited SOL conditions. SOL particle diffusivity (DSOL) is varied from 0.1 to 1 m2/s. When drifts are included, λq is insensitive to DSOL, consistent with the HD model, with λq near 3 mm; in no-drift cases, λq varies from 2 to 5 mm. Drift effects depress near-separatrix potential, generating a channel of strong electron heat convection that is insensitive to DSOL. Sensitivities to thermal diffusivities, plasma current, toroidal magnetic field, and device size are also assessed. These initial results will be discussed in detail, and progress toward modeling experimentally relevant high-recycling conditions will be reported. Supported by U.S. DOE Contract DE-SC0010434.

Computational helioseismology in the frequency domain: acoustic waves in axisymmetric solar models with flows

NASA Astrophysics Data System (ADS)

Gizon, Laurent; Barucq, Hélène; Duruflé, Marc; Hanson, Chris S.; Leguèbe, Michael; Birch, Aaron C.; Chabassier, Juliette; Fournier, Damien; Hohage, Thorsten; Papini, Emanuele

2017-04-01

Context. Local helioseismology has so far relied on semi-analytical methods to compute the spatial sensitivity of wave travel times to perturbations in the solar interior. These methods are cumbersome and lack flexibility. Aims: Here we propose a convenient framework for numerically solving the forward problem of time-distance helioseismology in the frequency domain. The fundamental quantity to be computed is the cross-covariance of the seismic wavefield. Methods: We choose sources of wave excitation that enable us to relate the cross-covariance of the oscillations to the Green's function in a straightforward manner. We illustrate the method by considering the 3D acoustic wave equation in an axisymmetric reference solar model, ignoring the effects of gravity on the waves. The symmetry of the background model around the rotation axis implies that the Green's function can be written as a sum of longitudinal Fourier modes, leading to a set of independent 2D problems. We use a high-order finite-element method to solve the 2D wave equation in frequency space. The computation is embarrassingly parallel, with each frequency and each azimuthal order solved independently on a computer cluster. Results: We compute travel-time sensitivity kernels in spherical geometry for flows, sound speed, and density perturbations under the first Born approximation. Convergence tests show that travel times can be computed with a numerical precision better than one millisecond, as required by the most precise travel-time measurements. Conclusions: The method presented here is computationally efficient and will be used to interpret travel-time measurements in order to infer, e.g., the large-scale meridional flow in the solar convection zone. It allows the implementation of (full-waveform) iterative inversions, whereby the axisymmetric background model is updated at each iteration.

Terrestrial laser scanning and a degenerated cylinder model to determine gross morphological change of cadavers under conditions of natural decomposition.

PubMed

Zhang, Xiao; Glennie, Craig L; Bucheli, Sibyl R; Lindgren, Natalie K; Lynne, Aaron M

2014-08-01

Decomposition can be a highly variable process with stages that are difficult to quantify. Using high accuracy terrestrial laser scanning a repeated three-dimensional (3D) documentation of volumetric changes of a human body during early decomposition is recorded. To determine temporal volumetric variations as well as 3D distribution of the changed locations in the body over time, this paper introduces the use of multiple degenerated cylinder models to provide a reasonable approximation of body parts against which 3D change can be measured and visualized. An iterative closest point algorithm is used for 3D registration, and a method for determining volumetric change is presented. Comparison of the laser scanning estimates of volumetric change shows good agreement with repeated in-situ measurements of abdomen and limb circumference that were taken diurnally. The 3D visualizations of volumetric changes demonstrate that bloat is a process with a beginning, middle, and end rather than a state of presence or absence. Additionally, the 3D visualizations show conclusively that cadaver bloat is not isolated to the abdominal cavity, but also occurs in the limbs. Detailed quantification of the bloat stage of decay has the potential to alter how the beginning and end of bloat are determined by researchers and can provide further insight into the effects of the ecosystem on decomposition. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Instantiation and registration of statistical shape models of the femur and pelvis using 3D ultrasound imaging.

PubMed

Barratt, Dean C; Chan, Carolyn S K; Edwards, Philip J; Penney, Graeme P; Slomczykowski, Mike; Carter, Timothy J; Hawkes, David J

2008-06-01

Statistical shape modelling potentially provides a powerful tool for generating patient-specific, 3D representations of bony anatomy for computer-aided orthopaedic surgery (CAOS) without the need for a preoperative CT scan. Furthermore, freehand 3D ultrasound (US) provides a non-invasive method for digitising bone surfaces in the operating theatre that enables a much greater region to be sampled compared with conventional direct-contact (i.e., pointer-based) digitisation techniques. In this paper, we describe how these approaches can be combined to simultaneously generate and register a patient-specific model of the femur and pelvis to the patient during surgery. In our implementation, a statistical deformation model (SDM) was constructed for the femur and pelvis by performing a principal component analysis on the B-spline control points that parameterise the freeform deformations required to non-rigidly register a training set of CT scans to a carefully segmented template CT scan. The segmented template bone surface, represented by a triangulated surface mesh, is instantiated and registered to a cloud of US-derived surface points using an iterative scheme in which the weights corresponding to the first five principal modes of variation of the SDM are optimised in addition to the rigid-body parameters. The accuracy of the method was evaluated using clinically realistic data obtained on three intact human cadavers (three whole pelves and six femurs). For each bone, a high-resolution CT scan and rigid-body registration transformation, calculated using bone-implanted fiducial markers, served as the gold standard bone geometry and registration transformation, respectively. After aligning the final instantiated model and CT-derived surfaces using the iterative closest point (ICP) algorithm, the average root-mean-square distance between the surfaces was 3.5mm over the whole bone and 3.7mm in the region of surgical interest. The corresponding distances after aligning the surfaces using the marker-based registration transformation were 4.6 and 4.5mm, respectively. We conclude that despite limitations on the regions of bone accessible using US imaging, this technique has potential as a cost-effective and non-invasive method to enable surgical navigation during CAOS procedures, without the additional radiation dose associated with performing a preoperative CT scan or intraoperative fluoroscopic imaging. However, further development is required to investigate errors using error measures relevant to specific surgical procedures.

Development, Validation, and Evaluation of Literacy 3D: A Package Supporting Tier 1 Preschool Literacy Instruction Implementation and Intervention

ERIC Educational Resources Information Center

Greenwood, Charles R.; Abbott, Mary; Beecher, Constance; Atwater, Jane; Petersen, Sarah

2017-01-01

Increasingly, prekindergarten programs with literacy outcome goals are seeking to implement evidence-based practices to improve results. Such efforts require instructional intervention strategies to engage children as well as strategies to support teacher implementation. Reported is the iterative development of Literacy 3D, an enhanced support…

High-performance finite-difference time-domain simulations of C-Mod and ITER RF antennas

NASA Astrophysics Data System (ADS)

Jenkins, Thomas G.; Smithe, David N.

2015-12-01

Finite-difference time-domain methods have, in recent years, developed powerful capabilities for modeling realistic ICRF behavior in fusion plasmas [1, 2, 3, 4]. When coupled with the power of modern high-performance computing platforms, such techniques allow the behavior of antenna near and far fields, and the flow of RF power, to be studied in realistic experimental scenarios at previously inaccessible levels of resolution. In this talk, we present results and 3D animations from high-performance FDTD simulations on the Titan Cray XK7 supercomputer, modeling both Alcator C-Mod's field-aligned ICRF antenna and the ITER antenna module. Much of this work focuses on scans over edge density, and tailored edge density profiles, to study dispersion and the physics of slow wave excitation in the immediate vicinity of the antenna hardware and SOL. An understanding of the role of the lower-hybrid resonance in low-density scenarios is emerging, and possible implications of this for the NSTX launcher and power balance are also discussed. In addition, we discuss ongoing work centered on using these simulations to estimate sputtering and impurity production, as driven by the self-consistent sheath potentials at antenna surfaces.

High-performance finite-difference time-domain simulations of C-Mod and ITER RF antennas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jenkins, Thomas G., E-mail: tgjenkins@txcorp.com; Smithe, David N., E-mail: smithe@txcorp.com

Finite-difference time-domain methods have, in recent years, developed powerful capabilities for modeling realistic ICRF behavior in fusion plasmas [1, 2, 3, 4]. When coupled with the power of modern high-performance computing platforms, such techniques allow the behavior of antenna near and far fields, and the flow of RF power, to be studied in realistic experimental scenarios at previously inaccessible levels of resolution. In this talk, we present results and 3D animations from high-performance FDTD simulations on the Titan Cray XK7 supercomputer, modeling both Alcator C-Mod’s field-aligned ICRF antenna and the ITER antenna module. Much of this work focuses on scansmore » over edge density, and tailored edge density profiles, to study dispersion and the physics of slow wave excitation in the immediate vicinity of the antenna hardware and SOL. An understanding of the role of the lower-hybrid resonance in low-density scenarios is emerging, and possible implications of this for the NSTX launcher and power balance are also discussed. In addition, we discuss ongoing work centered on using these simulations to estimate sputtering and impurity production, as driven by the self-consistent sheath potentials at antenna surfaces.« less

Study of ND3-enhanced MAR processes in D2-N2 plasmas to induce plasma detachment

NASA Astrophysics Data System (ADS)

Abe, Shota; Chakraborty Thakur, Saikat; Doerner, Russ; Tynan, George

2017-10-01

The Molecular Assisted Recombination (MAR) process is thought to be a main channel of volumetric recombination to induce the plasma detachment operation. Authors have focused on a new plasma recombination process supported by ammonia molecules, which will be formed by impurity seeding of N2 for controlling divertor plasma temperature and heat loads in ITER. This ammonia-enhanced MAR process would occur throughout two steps. In this study, the first step of the new MAR process is investigated in low density plasmas (Ne 1016 m-3, Te 4 eV) fueled by D2 and N2. Ion and neutral densities are measured by a calibrated Electrostatic Quadrupole Plasma (EQP) analyzer, combination of an ion energy analyzer and mass spectrometer. The EQP shows formation of ND3 during discharges. Ion densities calculated by a rate equation model are compared with experimental results. We find that the model can reproduce the observed ion densities in the plasma. The model calculation shows that the dominant neutralization channel of Dx+(x =1-3) ions in the volume is the formation of NDy+(y =3 or 4) throughout charge/D+ exchange reactions with ND3. Furthermore, high density plasmas (Ne 1016 m-3) have been achieved to investigate electron-impact dissociative recombination processes of formed NDy+,which is the second step of this MAR process.

Multiple-point statistical simulation for hydrogeological models: 3-D training image development and conditioning strategies

NASA Astrophysics Data System (ADS)

Høyer, Anne-Sophie; Vignoli, Giulio; Mejer Hansen, Thomas; Thanh Vu, Le; Keefer, Donald A.; Jørgensen, Flemming

2017-12-01

Most studies on the application of geostatistical simulations based on multiple-point statistics (MPS) to hydrogeological modelling focus on relatively fine-scale models and concentrate on the estimation of facies-level structural uncertainty. Much less attention is paid to the use of input data and optimal construction of training images. For instance, even though the training image should capture a set of spatial geological characteristics to guide the simulations, the majority of the research still relies on 2-D or quasi-3-D training images. In the present study, we demonstrate a novel strategy for 3-D MPS modelling characterized by (i) realistic 3-D training images and (ii) an effective workflow for incorporating a diverse group of geological and geophysical data sets. The study covers an area of 2810 km2 in the southern part of Denmark. MPS simulations are performed on a subset of the geological succession (the lower to middle Miocene sediments) which is characterized by relatively uniform structures and dominated by sand and clay. The simulated domain is large and each of the geostatistical realizations contains approximately 45 million voxels with size 100 m × 100 m × 5 m. Data used for the modelling include water well logs, high-resolution seismic data, and a previously published 3-D geological model. We apply a series of different strategies for the simulations based on data quality, and develop a novel method to effectively create observed spatial trends. The training image is constructed as a relatively small 3-D voxel model covering an area of 90 km2. We use an iterative training image development strategy and find that even slight modifications in the training image create significant changes in simulations. Thus, this study shows how to include both the geological environment and the type and quality of input information in order to achieve optimal results from MPS modelling. We present a practical workflow to build the training image and effectively handle different types of input information to perform large-scale geostatistical modelling.

A methodology for finding the optimal iteration number of the SIRT algorithm for quantitative Electron Tomography.

PubMed

Okariz, Ana; Guraya, Teresa; Iturrondobeitia, Maider; Ibarretxe, Julen

2017-02-01

The SIRT (Simultaneous Iterative Reconstruction Technique) algorithm is commonly used in Electron Tomography to calculate the original volume of the sample from noisy images, but the results provided by this iterative procedure are strongly dependent on the specific implementation of the algorithm, as well as on the number of iterations employed for the reconstruction. In this work, a methodology for selecting the iteration number of the SIRT reconstruction that provides the most accurate segmentation is proposed. The methodology is based on the statistical analysis of the intensity profiles at the edge of the objects in the reconstructed volume. A phantom which resembles a a carbon black aggregate has been created to validate the methodology and the SIRT implementations of two free software packages (TOMOJ and TOMO3D) have been used. Copyright © 2016 Elsevier B.V. All rights reserved.

Cost-Effectiveness Analysis of Intensity Modulated Radiation Therapy Versus 3-Dimensional Conformal Radiation Therapy for Anal Cancer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hodges, Joseph C., E-mail: joseph.hodges@utsouthwestern.edu; Beg, Muhammad S.; Das, Prajnan

2014-07-15

Purpose: To compare the cost-effectiveness of intensity modulated radiation therapy (IMRT) and 3-dimensional conformal radiation therapy (3D-CRT) for anal cancer and determine disease, patient, and treatment parameters that influence the result. Methods and Materials: A Markov decision model was designed with the various disease states for the base case of a 65-year-old patient with anal cancer treated with either IMRT or 3D-CRT and concurrent chemotherapy. Health states accounting for rates of local failure, colostomy failure, treatment breaks, patient prognosis, acute and late toxicities, and the utility of toxicities were informed by existing literature and analyzed with deterministic and probabilistic sensitivitymore » analysis. Results: In the base case, mean costs and quality-adjusted life expectancy in years (QALY) for IMRT and 3D-CRT were $32,291 (4.81) and $28,444 (4.78), respectively, resulting in an incremental cost-effectiveness ratio of $128,233/QALY for IMRT compared with 3D-CRT. Probabilistic sensitivity analysis found that IMRT was cost-effective in 22%, 47%, and 65% of iterations at willingness-to-pay thresholds of $50,000, $100,000, and $150,000 per QALY, respectively. Conclusions: In our base model, IMRT was a cost-ineffective strategy despite the reduced acute treatment toxicities and their associated costs of management. The model outcome was sensitive to variations in local and colostomy failure rates, as well as patient-reported utilities relating to acute toxicities.« less

Calculating vibrational spectra with sum of product basis functions without storing full-dimensional vectors or matrices.

PubMed

Leclerc, Arnaud; Carrington, Tucker

2014-05-07

We propose an iterative method for computing vibrational spectra that significantly reduces the memory cost of calculations. It uses a direct product primitive basis, but does not require storing vectors with as many components as there are product basis functions. Wavefunctions are represented in a basis each of whose functions is a sum of products (SOP) and the factorizable structure of the Hamiltonian is exploited. If the factors of the SOP basis functions are properly chosen, wavefunctions are linear combinations of a small number of SOP basis functions. The SOP basis functions are generated using a shifted block power method. The factors are refined with a rank reduction algorithm to cap the number of terms in a SOP basis function. The ideas are tested on a 20-D model Hamiltonian and a realistic CH3CN (12 dimensional) potential. For the 20-D problem, to use a standard direct product iterative approach one would need to store vectors with about 10(20) components and would hence require about 8 × 10(11) GB. With the approach of this paper only 1 GB of memory is necessary. Results for CH3CN agree well with those of a previous calculation on the same potential.

Extension of an iterative closest point algorithm for simultaneous localization and mapping in corridor environments

NASA Astrophysics Data System (ADS)

Yue, Haosong; Chen, Weihai; Wu, Xingming; Wang, Jianhua

2016-03-01

Three-dimensional (3-D) simultaneous localization and mapping (SLAM) is a crucial technique for intelligent robots to navigate autonomously and execute complex tasks. It can also be applied to shape measurement, reverse engineering, and many other scientific or engineering fields. A widespread SLAM algorithm, named KinectFusion, performs well in environments with complex shapes. However, it cannot handle translation uncertainties well in highly structured scenes. This paper improves the KinectFusion algorithm and makes it competent in both structured and unstructured environments. 3-D line features are first extracted according to both color and depth data captured by Kinect sensor. Then the lines in the current data frame are matched with the lines extracted from the entire constructed world model. Finally, we fuse the distance errors of these line-pairs into the standard KinectFusion framework and estimate sensor poses using an iterative closest point-based algorithm. Comparative experiments with the KinectFusion algorithm and one state-of-the-art method in a corridor scene have been done. The experimental results demonstrate that after our improvement, the KinectFusion algorithm can also be applied to structured environments and has higher accuracy. Experiments on two open access datasets further validated our improvements.

Decentralized Feedback Controllers for Robust Stabilization of Periodic Orbits of Hybrid Systems: Application to Bipedal Walking.

PubMed

Hamed, Kaveh Akbari; Gregg, Robert D

2017-07-01

This paper presents a systematic algorithm to design time-invariant decentralized feedback controllers to exponentially and robustly stabilize periodic orbits for hybrid dynamical systems against possible uncertainties in discrete-time phases. The algorithm assumes a family of parameterized and decentralized nonlinear controllers to coordinate interconnected hybrid subsystems based on a common phasing variable. The exponential and [Formula: see text] robust stabilization problems of periodic orbits are translated into an iterative sequence of optimization problems involving bilinear and linear matrix inequalities. By investigating the properties of the Poincaré map, some sufficient conditions for the convergence of the iterative algorithm are presented. The power of the algorithm is finally demonstrated through designing a set of robust stabilizing local nonlinear controllers for walking of an underactuated 3D autonomous bipedal robot with 9 degrees of freedom, impact model uncertainties, and a decentralization scheme motivated by amputee locomotion with a transpelvic prosthetic leg.

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE PAGES

Hamilton, Steven; Berrill, Mark; Clarno, Kevin; ...

2016-04-01

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Furthermore, numerical simulations demonstrating the efficiency ofmore » JFNK and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

Decentralized Feedback Controllers for Robust Stabilization of Periodic Orbits of Hybrid Systems: Application to Bipedal Walking

PubMed Central

Hamed, Kaveh Akbari; Gregg, Robert D.

2016-01-01

This paper presents a systematic algorithm to design time-invariant decentralized feedback controllers to exponentially and robustly stabilize periodic orbits for hybrid dynamical systems against possible uncertainties in discrete-time phases. The algorithm assumes a family of parameterized and decentralized nonlinear controllers to coordinate interconnected hybrid subsystems based on a common phasing variable. The exponential and H2 robust stabilization problems of periodic orbits are translated into an iterative sequence of optimization problems involving bilinear and linear matrix inequalities. By investigating the properties of the Poincaré map, some sufficient conditions for the convergence of the iterative algorithm are presented. The power of the algorithm is finally demonstrated through designing a set of robust stabilizing local nonlinear controllers for walking of an underactuated 3D autonomous bipedal robot with 9 degrees of freedom, impact model uncertainties, and a decentralization scheme motivated by amputee locomotion with a transpelvic prosthetic leg. PMID:28959117

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton, Steven; Berrill, Mark; Clarno, Kevin

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Furthermore, numerical simulations demonstrating the efficiency ofmore » JFNK and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

An assessment of coupling algorithms for nuclear reactor core physics simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamilton, Steven, E-mail: hamiltonsp@ornl.gov; Berrill, Mark, E-mail: berrillma@ornl.gov; Clarno, Kevin, E-mail: clarnokt@ornl.gov

This paper evaluates the performance of multiphysics coupling algorithms applied to a light water nuclear reactor core simulation. The simulation couples the k-eigenvalue form of the neutron transport equation with heat conduction and subchannel flow equations. We compare Picard iteration (block Gauss–Seidel) to Anderson acceleration and multiple variants of preconditioned Jacobian-free Newton–Krylov (JFNK). The performance of the methods are evaluated over a range of energy group structures and core power levels. A novel physics-based approximation to a Jacobian-vector product has been developed to mitigate the impact of expensive on-line cross section processing steps. Numerical simulations demonstrating the efficiency of JFNKmore » and Anderson acceleration relative to standard Picard iteration are performed on a 3D model of a nuclear fuel assembly. Both criticality (k-eigenvalue) and critical boron search problems are considered.« less

A 3D finite-difference BiCG iterative solver with the Fourier-Jacobi preconditioner for the anisotropic EIT/EEG forward problem.

PubMed

Turovets, Sergei; Volkov, Vasily; Zherdetsky, Aleksej; Prakonina, Alena; Malony, Allen D

2014-01-01

The Electrical Impedance Tomography (EIT) and electroencephalography (EEG) forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with the finite-difference method and the optimally preconditioned Conjugate Gradient- (CG-) type iterative method for treatment of the discrete model. The numerical scheme includes the standard operations of summation and multiplication of sparse matrices and vector, as well as FFT, making it easy to implement and eligible for the effective parallel implementation. Some typical use cases for the EIT/EEG problems are considered demonstrating high efficiency of the proposed numerical technique.

Demonstration of a full volume 3D pre-stack depth migration in the Garden Banks area using massively parallel processor (MPP) technology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Solano, M.; Chang, H.; VanDyke, J.

1996-12-31

This paper describes the implementation and results of portable, production-scale 3D Pre-stack Kirchhoff depth migration software. Full volume pre-stack imaging was applied to a six million trace (46.9 Gigabyte) data set from a subsalt play in the Garden Banks area in the Gulf of Mexico. The velocity model building and updating, were derived using image depth gathers and an image-driven strategy. After three velocity iterations, depth migrated sections revealed drilling targets that were not visible in the conventional 3D post-stack time migrated data set. As expected from the implementation of the migration algorithm, it was found that amplitudes are wellmore » preserved and anomalies associated with known reservoirs, conform to petrophysical predictions. Image gathers for velocity analysis and the final depth migrated volume, were generated on an 1824 node Intel Paragon at Sandia National Laboratories. The code has been successfully ported to a CRAY (T3D) and Unix workstation Parallel Virtual Machine environments (PVM).« less

Fourier Domain Iterative Approach to Optical Sectioning of 3d Translucent Objects for Ophthalmology Purposes

NASA Astrophysics Data System (ADS)

Razguli, A. V.; Iroshnikov, N. G.; Larichev, A. V.; Romanenko, T. E.; Goncharov, A. S.

2017-05-01

In this paper we deal with the problem of optical sectioning. This is a post processing step while investigating of 3D translucent medical objects based on rapid refocusing of the imaging system by the adaptive optics technique. Each image, captured in focal plane, can be represented as the sum of in-focus true section and out-of-focus images of the neighboring sections of the depth that are undesirable in the subsequent reconstruction of 3D object. The problem of optical sectioning under consideration is to elaborate a robust approach capable of obtaining a stack of cross section images purified from such distortions. For a typical sectioning statement arising in ophthalmology we propose a local iterative method in Fourier spectral plane. Compared to the non-local constant parameter selection for the whole spectral domain, the method demonstrates both improved sectioning results and a good level of scalability when implemented on multi-core CPUs.

Three dimensional shape measurement of wear particle by iterative volume intersection

NASA Astrophysics Data System (ADS)

Wu, Hongkun; Li, Ruowei; Liu, Shilong; Rahman, Md Arifur; Liu, Sanchi; Kwok, Ngaiming; Peng, Zhongxiao

2018-04-01

The morphology of wear particle is a fundamental indicator where wear oriented machine health can be assessed. Previous research proved that thorough measurement of the particle shape allows more reliable explanation of the occurred wear mechanism. However, most of current particle measurement techniques are focused on extraction of the two-dimensional (2-D) morphology, while other critical particle features including volume and thickness are not available. As a result, a three-dimensional (3-D) shape measurement method is developed to enable a more comprehensive particle feature description. The developed method is implemented in three steps: (1) particle profiles in multiple views are captured via a camera mounted above a micro fluid channel; (2) a preliminary reconstruction is accomplished by the shape-from-silhouette approach with the collected particle contours; (3) an iterative re-projection process follows to obtain the final 3-D measurement by minimizing the difference between the original and the re-projected contours. Results from real data are presented, demonstrating the feasibility of the proposed method.

3D level set methods for evolving fronts on tetrahedral meshes with adaptive mesh refinement

DOE PAGES

Morgan, Nathaniel Ray; Waltz, Jacob I.

2017-03-02

The level set method is commonly used to model dynamically evolving fronts and interfaces. In this work, we present new methods for evolving fronts with a specified velocity field or in the surface normal direction on 3D unstructured tetrahedral meshes with adaptive mesh refinement (AMR). The level set field is located at the nodes of the tetrahedral cells and is evolved using new upwind discretizations of Hamilton–Jacobi equations combined with a Runge–Kutta method for temporal integration. The level set field is periodically reinitialized to a signed distance function using an iterative approach with a new upwind gradient. We discuss themore » details of these level set and reinitialization methods. Results from a range of numerical test problems are presented.« less

3-D transient hydraulic tomography in unconfined aquifers with fast drainage response

NASA Astrophysics Data System (ADS)

Cardiff, M.; Barrash, W.

2011-12-01

We investigate, through numerical experiments, the viability of three-dimensional transient hydraulic tomography (3DTHT) for identifying the spatial distribution of groundwater flow parameters (primarily, hydraulic conductivity K) in permeable, unconfined aquifers. To invert the large amount of transient data collected from 3DTHT surveys, we utilize an iterative geostatistical inversion strategy in which outer iterations progressively increase the number of data points fitted and inner iterations solve the quasi-linear geostatistical formulas of Kitanidis. In order to base our numerical experiments around realistic scenarios, we utilize pumping rates, geometries, and test lengths similar to those attainable during 3DTHT field campaigns performed at the Boise Hydrogeophysical Research Site (BHRS). We also utilize hydrologic parameters that are similar to those observed at the BHRS and in other unconsolidated, unconfined fluvial aquifers. In addition to estimating K, we test the ability of 3DTHT to estimate both average storage values (specific storage Ss and specific yield Sy) as well as spatial variability in storage coefficients. The effects of model conceptualization errors during unconfined 3DTHT are investigated including: (1) assuming constant storage coefficients during inversion and (2) assuming stationary geostatistical parameter variability. Overall, our findings indicate that estimation of K is slightly degraded if storage parameters must be jointly estimated, but that this effect is quite small compared with the degradation of estimates due to violation of "structural" geostatistical assumptions. Practically, we find for our scenarios that assuming constant storage values during inversion does not appear to have a significant effect on K estimates or uncertainty bounds.

3-D minimum-structure inversion of magnetotelluric data using the finite-element method and tetrahedral grids

NASA Astrophysics Data System (ADS)

Jahandari, H.; Farquharson, C. G.

2017-11-01

Unstructured grids enable representing arbitrary structures more accurately and with fewer cells compared to regular structured grids. These grids also allow more efficient refinements compared to rectilinear meshes. In this study, tetrahedral grids are used for the inversion of magnetotelluric (MT) data, which allows for the direct inclusion of topography in the model, for constraining an inversion using a wireframe-based geological model and for local refinement at the observation stations. A minimum-structure method with an iterative model-space Gauss-Newton algorithm for optimization is used. An iterative solver is employed for solving the normal system of equations at each Gauss-Newton step and the sensitivity matrix-vector products that are required by this solver are calculated using pseudo-forward problems. This method alleviates the need to explicitly form the Hessian or Jacobian matrices which significantly reduces the required computation memory. Forward problems are formulated using an edge-based finite-element approach and a sparse direct solver is used for the solutions. This solver allows saving and re-using the factorization of matrices for similar pseudo-forward problems within a Gauss-Newton iteration which greatly minimizes the computation time. Two examples are presented to show the capability of the algorithm: the first example uses a benchmark model while the second example represents a realistic geological setting with topography and a sulphide deposit. The data that are inverted are the full-tensor impedance and the magnetic transfer function vector. The inversions sufficiently recovered the models and reproduced the data, which shows the effectiveness of unstructured grids for complex and realistic MT inversion scenarios. The first example is also used to demonstrate the computational efficiency of the presented model-space method by comparison with its data-space counterpart.

Medical Image Segmentation by Combining Graph Cut and Oriented Active Appearance Models

PubMed Central

Chen, Xinjian; Udupa, Jayaram K.; Bağcı, Ulaş; Zhuge, Ying; Yao, Jianhua

2017-01-01

In this paper, we propose a novel 3D segmentation method based on the effective combination of the active appearance model (AAM), live wire (LW), and graph cut (GC). The proposed method consists of three main parts: model building, initialization, and segmentation. In the model building part, we construct the AAM and train the LW cost function and GC parameters. In the initialization part, a novel algorithm is proposed for improving the conventional AAM matching method, which effectively combines the AAM and LW method, resulting in Oriented AAM (OAAM). A multi-object strategy is utilized to help in object initialization. We employ a pseudo-3D initialization strategy, and segment the organs slice by slice via multi-object OAAM method. For the segmentation part, a 3D shape constrained GC method is proposed. The object shape generated from the initialization step is integrated into the GC cost computation, and an iterative GC-OAAM method is used for object delineation. The proposed method was tested in segmenting the liver, kidneys, and spleen on a clinical CT dataset and also tested on the MICCAI 2007 grand challenge for liver segmentation training dataset. The results show the following: (a) An overall segmentation accuracy of true positive volume fraction (TPVF) > 94.3%, false positive volume fraction (FPVF) < 0.2% can be achieved. (b) The initialization performance can be improved by combining AAM and LW. (c) The multi-object strategy greatly facilitates the initialization. (d) Compared to the traditional 3D AAM method, the pseudo 3D OAAM method achieves comparable performance while running 12 times faster. (e) The performance of proposed method is comparable to the state of the art liver segmentation algorithm. The executable version of 3D shape constrained GC with user interface can be downloaded from website http://xinjianchen.wordpress.com/research/. PMID:22311862

Depth-color fusion strategy for 3-D scene modeling with Kinect.

PubMed

Camplani, Massimo; Mantecon, Tomas; Salgado, Luis

2013-12-01

Low-cost depth cameras, such as Microsoft Kinect, have completely changed the world of human-computer interaction through controller-free gaming applications. Depth data provided by the Kinect sensor presents several noise-related problems that have to be tackled to improve the accuracy of the depth data, thus obtaining more reliable game control platforms and broadening its applicability. In this paper, we present a depth-color fusion strategy for 3-D modeling of indoor scenes with Kinect. Accurate depth and color models of the background elements are iteratively built, and used to detect moving objects in the scene. Kinect depth data is processed with an innovative adaptive joint-bilateral filter that efficiently combines depth and color by analyzing an edge-uncertainty map and the detected foreground regions. Results show that the proposed approach efficiently tackles main Kinect data problems: distance-dependent depth maps, spatial noise, and temporal random fluctuations are dramatically reduced; objects depth boundaries are refined, and nonmeasured depth pixels are interpolated. Moreover, a robust depth and color background model and accurate moving objects silhouette are generated.

Total variation regularization of the 3-D gravity inverse problem using a randomized generalized singular value decomposition

NASA Astrophysics Data System (ADS)

Vatankhah, Saeed; Renaut, Rosemary A.; Ardestani, Vahid E.

2018-04-01

We present a fast algorithm for the total variation regularization of the 3-D gravity inverse problem. Through imposition of the total variation regularization, subsurface structures presenting with sharp discontinuities are preserved better than when using a conventional minimum-structure inversion. The associated problem formulation for the regularization is nonlinear but can be solved using an iteratively reweighted least-squares algorithm. For small-scale problems the regularized least-squares problem at each iteration can be solved using the generalized singular value decomposition. This is not feasible for large-scale, or even moderate-scale, problems. Instead we introduce the use of a randomized generalized singular value decomposition in order to reduce the dimensions of the problem and provide an effective and efficient solution technique. For further efficiency an alternating direction algorithm is used to implement the total variation weighting operator within the iteratively reweighted least-squares algorithm. Presented results for synthetic examples demonstrate that the novel randomized decomposition provides good accuracy for reduced computational and memory demands as compared to use of classical approaches.

Methodology for sensitivity analysis, approximate analysis, and design optimization in CFD for multidisciplinary applications

NASA Technical Reports Server (NTRS)

Taylor, Arthur C., III; Hou, Gene W.

1993-01-01

In this study involving advanced fluid flow codes, an incremental iterative formulation (also known as the delta or correction form) together with the well-known spatially-split approximate factorization algorithm, is presented for solving the very large sparse systems of linear equations which are associated with aerodynamic sensitivity analysis. For smaller 2D problems, a direct method can be applied to solve these linear equations in either the standard or the incremental form, in which case the two are equivalent. Iterative methods are needed for larger 2D and future 3D applications, however, because direct methods require much more computer memory than is currently available. Iterative methods for solving these equations in the standard form are generally unsatisfactory due to an ill-conditioning of the coefficient matrix; this problem can be overcome when these equations are cast in the incremental form. These and other benefits are discussed. The methodology is successfully implemented and tested in 2D using an upwind, cell-centered, finite volume formulation applied to the thin-layer Navier-Stokes equations. Results are presented for two sample airfoil problems: (1) subsonic low Reynolds number laminar flow; and (2) transonic high Reynolds number turbulent flow.

Modeling and simulation of a beam emission spectroscopy diagnostic for the ITER prototype neutral beam injector.

PubMed

Barbisan, M; Zaniol, B; Pasqualotto, R

2014-11-01

A test facility for the development of the neutral beam injection system for ITER is under construction at Consorzio RFX. It will host two experiments: SPIDER, a 100 keV H(-)/D(-) ion RF source, and MITICA, a prototype of the full performance ITER injector (1 MV, 17 MW beam). A set of diagnostics will monitor the operation and allow to optimize the performance of the two prototypes. In particular, beam emission spectroscopy will measure the uniformity and the divergence of the fast particles beam exiting the ion source and travelling through the beam line components. This type of measurement is based on the collection of the Hα/Dα emission resulting from the interaction of the energetic particles with the background gas. A numerical model has been developed to simulate the spectrum of the collected emissions in order to design this diagnostic and to study its performance. The paper describes the model at the base of the simulations and presents the modeled Hα spectra in the case of MITICA experiment.

An iterative algorithm for soft tissue reconstruction from truncated flat panel projections

NASA Astrophysics Data System (ADS)

Langan, D.; Claus, B.; Edic, P.; Vaillant, R.; De Man, B.; Basu, S.; Iatrou, M.

2006-03-01

The capabilities of flat panel interventional x-ray systems continue to expand, enabling a broader array of medical applications to be performed in a minimally invasive manner. Although CT is providing pre-operative 3D information, there is a need for 3D imaging of low contrast soft tissue during interventions in a number of areas including neurology, cardiac electro-physiology, and oncology. Unlike CT systems, interventional angiographic x-ray systems provide real-time large field of view 2D imaging, patient access, and flexible gantry positioning enabling interventional procedures. However, relative to CT, these C-arm flat panel systems have additional technical challenges in 3D soft tissue imaging including slower rotation speed, gantry vibration, reduced lateral patient field of view (FOV), and increased scatter. The reduced patient FOV often results in significant data truncation. Reconstruction of truncated (incomplete) data is known an "interior problem", and it is mathematically impossible to obtain an exact reconstruction. Nevertheless, it is an important problem in 3D imaging on a C-arm to address the need to generate a 3D reconstruction representative of the object being imaged with minimal artifacts. In this work we investigate the application of an iterative Maximum Likelihood Transmission (MLTR) algorithm to truncated data. We also consider truncated data with limited views for cardiac imaging where the views are gated by the electrocardiogram(ECG) to combat motion artifacts.

HeinzelCluster: accelerated reconstruction for FORE and OSEM3D.

PubMed

Vollmar, S; Michel, C; Treffert, J T; Newport, D F; Casey, M; Knöss, C; Wienhard, K; Liu, X; Defrise, M; Heiss, W D

2002-08-07

Using iterative three-dimensional (3D) reconstruction techniques for reconstruction of positron emission tomography (PET) is not feasible on most single-processor machines due to the excessive computing time needed, especially so for the large sinogram sizes of our high-resolution research tomograph (HRRT). In our first approach to speed up reconstruction time we transform the 3D scan into the format of a two-dimensional (2D) scan with sinograms that can be reconstructed independently using Fourier rebinning (FORE) and a fast 2D reconstruction method. On our dedicated reconstruction cluster (seven four-processor systems, Intel PIII@700 MHz, switched fast ethernet and Myrinet, Windows NT Server), we process these 2D sinograms in parallel. We have achieved a speedup > 23 using 26 processors and also compared results for different communication methods (RPC, Syngo, Myrinet GM). The other approach is to parallelize OSEM3D (implementation of C Michel), which has produced the best results for HRRT data so far and is more suitable for an adequate treatment of the sinogram gaps that result from the detector geometry of the HRRT. We have implemented two levels of parallelization for four dedicated cluster (a shared memory fine-grain level on each node utilizing all four processors and a coarse-grain level allowing for 15 nodes) reducing the time for one core iteration from over 7 h to about 35 min.

Iterative Focused Screening with Biological Fingerprints Identifies Selective Asc-1 Inhibitors Distinct from Traditional High Throughput Screening.

PubMed

Kutchukian, Peter S; Warren, Lee; Magliaro, Brian C; Amoss, Adam; Cassaday, Jason A; O'Donnell, Gregory; Squadroni, Brian; Zuck, Paul; Pascarella, Danette; Culberson, J Chris; Cooke, Andrew J; Hurzy, Danielle; Schlegel, Kelly-Ann Sondra; Thomson, Fiona; Johnson, Eric N; Uebele, Victor N; Hermes, Jeffrey D; Parmentier-Batteur, Sophie; Finley, Michael

2017-02-17

N-methyl-d-aspartate receptors (NMDARs) mediate glutamatergic signaling that is critical to cognitive processes in the central nervous system, and NMDAR hypofunction is thought to contribute to cognitive impairment observed in both schizophrenia and Alzheimer's disease. One approach to enhance the function of NMDAR is to increase the concentration of an NMDAR coagonist, such as glycine or d-serine, in the synaptic cleft. Inhibition of alanine-serine-cysteine transporter-1 (Asc-1), the primary transporter of d-serine, is attractive because the transporter is localized to neurons in brain regions critical to cognitive function, including the hippocampus and cortical layers III and IV, and is colocalized with d-serine and NMDARs. To identify novel Asc-1 inhibitors, two different screening approaches were performed with whole-cell amino acid uptake in heterologous cells stably expressing human Asc-1: (1) a high-throughput screen (HTS) of 3 M compounds measuring 35 S l-cysteine uptake into cells attached to scintillation proximity assay beads in a 1536 well format and (2) an iterative focused screen (IFS) of a 45 000 compound diversity set using a 3 H d-serine uptake assay with a liquid scintillation plate reader in a 384 well format. Critically important for both screening approaches was the implementation of counter screens to remove nonspecific inhibitors of radioactive amino acid uptake. Furthermore, a 15 000 compound expansion step incorporating both on- and off-target data into chemical and biological fingerprint-based models for selection of additional hits enabled the identification of novel Asc-1-selective chemical matter from the IFS that was not identified in the full-collection HTS.

Inversion of Density Interfaces Using the Pseudo-Backpropagation Neural Network Method

NASA Astrophysics Data System (ADS)

Chen, Xiaohong; Du, Yukun; Liu, Zhan; Zhao, Wenju; Chen, Xiaocheng

2018-05-01

This paper presents a new pseudo-backpropagation (BP) neural network method that can invert multi-density interfaces at one time. The new method is based on the conventional forward modeling and inverse modeling theories in addition to conventional pseudo-BP neural network arithmetic. A 3D inversion model for gravity anomalies of multi-density interfaces using the pseudo-BP neural network method is constructed after analyzing the structure and function of the artificial neural network. The corresponding iterative inverse formula of the space field is presented at the same time. Based on trials of gravity anomalies and density noise, the influence of the two kinds of noise on the inverse result is discussed and the scale of noise requested for the stability of the arithmetic is analyzed. The effects of the initial model on the reduction of the ambiguity of the result and improvement of the precision of inversion are discussed. The correctness and validity of the method were verified by the 3D model of the three interfaces. 3D inversion was performed on the observed gravity anomaly data of the Okinawa trough using the program presented herein. The Tertiary basement and Moho depth were obtained from the inversion results, which also testify the adaptability of the method. This study has made a useful attempt for the inversion of gravity density interfaces.

Modelling temporal variance of component temperatures and directional anisotropy over vegetated canopy

NASA Astrophysics Data System (ADS)

Bian, Zunjian; du, yongming; li, hua

2016-04-01

Land surface temperature (LST) as a key variable plays an important role on hydrological, meteorology and climatological study. Thermal infrared directional anisotropy is one of essential factors to LST retrieval and application on longwave radiance estimation. Many approaches have been proposed to estimate directional brightness temperatures (DBT) over natural and urban surfaces. While less efforts focus on 3-D scene and the surface component temperatures used in DBT models are quiet difficult to acquire. Therefor a combined 3-D model of TRGM (Thermal-region Radiosity-Graphics combined Model) and energy balance method is proposed in the paper for the attempt of synchronously simulation of component temperatures and DBT in the row planted canopy. The surface thermodynamic equilibrium can be final determined by the iteration strategy of TRGM and energy balance method. The combined model was validated by the top-of-canopy DBTs using airborne observations. The results indicated that the proposed model performs well on the simulation of directional anisotropy, especially the hotspot effect. Though we find that the model overestimate the DBT with Bias of 1.2K, it can be an option as a data reference to study temporal variance of component temperatures and DBTs when field measurement is inaccessible

A hybrid approach to generating search subspaces in dynamically constrained 4-dimensional data assimilation

NASA Astrophysics Data System (ADS)

Yaremchuk, Max; Martin, Paul; Beattie, Christopher

2017-09-01

Development and maintenance of the linearized and adjoint code for advanced circulation models is a challenging issue, requiring a significant proportion of total effort in operational data assimilation (DA). The ensemble-based DA techniques provide a derivative-free alternative, which appears to be competitive with variational methods in many practical applications. This article proposes a hybrid scheme for generating the search subspaces in the adjoint-free 4-dimensional DA method (a4dVar) that does not use a predefined ensemble. The method resembles 4dVar in that the optimal solution is strongly constrained by model dynamics and search directions are supplied iteratively using information from the current and previous model trajectories generated in the process of optimization. In contrast to 4dVar, which produces a single search direction from exact gradient information, a4dVar employs an ensemble of directions to form a subspace in order to proceed. In the earlier versions of a4dVar, search subspaces were built using the leading EOFs of either the model trajectory or the projections of the model-data misfits onto the range of the background error covariance (BEC) matrix at the current iteration. In the present study, we blend both approaches and explore a hybrid scheme of ensemble generation in order to improve the performance and flexibility of the algorithm. In addition, we introduce balance constraints into the BEC structure and periodically augment the search ensemble with BEC eigenvectors to avoid repeating minimization over already explored subspaces. Performance of the proposed hybrid a4dVar (ha4dVar) method is compared with that of standard 4dVar in a realistic regional configuration assimilating real data into the Navy Coastal Ocean Model (NCOM). It is shown that the ha4dVar converges faster than a4dVar and can be potentially competitive with 4dvar both in terms of the required computational time and the forecast skill.

ITER activities and fusion technology

NASA Astrophysics Data System (ADS)

Seki, M.

2007-10-01

At the 21st IAEA Fusion Energy Conference, 68 and 67 papers were presented in the categories of ITER activities and fusion technology, respectively. ITER performance prediction, results of technology R&D and the construction preparation provide good confidence in ITER realization. The superconducting tokamak EAST achieved the first plasma just before the conference. The construction of other new experimental machines has also shown steady progress. Future reactor studies stress the importance of down sizing and a steady-state approach. Reactor technology in the field of blanket including the ITER TBM programme and materials for the demonstration power plant showed sound progress in both R&D and design activities.

Validation of Kinetic-Turbulent-Neoclassical Theory for Edge Intrinsic Rotation in DIII-D Plasmas

NASA Astrophysics Data System (ADS)

Ashourvan, Arash

2017-10-01

Recent experiments on DIII-D with low-torque neutral beam injection (NBI) have provided a validation of a new model of momentum generation in a wide range of conditions spanning L- and H-mode with direct ion and electron heating. A challenge in predicting the bulk rotation profile for ITER has been to capture the physics of momentum transport near the separatrix and steep gradient region. A recent theory has presented a model for edge momentum transport which predicts the value and direction of the main-ion intrinsic velocity at the pedestal-top, generated by the passing orbits in the inhomogeneous turbulent field. In this study, this model-predicted velocity is tested on DIII-D for a database of 44 low-torque NBI discharges comprised of bothL- and H-mode plasmas. For moderate NBI powers (PNBI<4 MW), model prediction agrees well with the experiments for both L- and H-mode. At higher NBI power the experimental rotation is observed to saturate and even degrade compared to theory. TRANSP-NUBEAM simulations performed for the database show that for discharges with nominally balanced - but high powered - NBI, the net injected torque through the edge can exceed 1 N.m in the counter-current direction. The theory model has been extended to compute the rotation degradation from this counter-current NBI torque by solving a reduced momentum evolution equation for the edge and found the revised velocity prediction to be in agreement with experiment. Projecting to the ITER baseline scenario, this model predicts a value for the pedestal-top rotation (ρ 0.9) comparable to 4 kRad/s. Using the theory modeled - and now tested - velocity to predict the bulk plasma rotation opens up a path to more confidently projecting the confinement and stability in ITER. Supported by the US DOE under DE-AC02-09CH11466 and DE-FC02-04ER54698.

2-D Fused Image Reconstruction approach for Microwave Tomography: a theoretical assessment using FDTD Model

PubMed Central

Bindu, G.; Semenov, S.

2013-01-01

This paper describes an efficient two-dimensional fused image reconstruction approach for Microwave Tomography (MWT). Finite Difference Time Domain (FDTD) models were created for a viable MWT experimental system having the transceivers modelled using thin wire approximation with resistive voltage sources. Born Iterative and Distorted Born Iterative methods have been employed for image reconstruction with the extremity imaging being done using a differential imaging technique. The forward solver in the imaging algorithm employs the FDTD method of solving the time domain Maxwell’s equations with the regularisation parameter computed using a stochastic approach. The algorithm is tested with 10% noise inclusion and successful image reconstruction has been shown implying its robustness. PMID:24058889

Tangible Landscape: Cognitively Grasping the Flow of Water

NASA Astrophysics Data System (ADS)

Harmon, B. A.; Petrasova, A.; Petras, V.; Mitasova, H.; Meentemeyer, R. K.

2016-06-01

Complex spatial forms like topography can be challenging to understand, much less intentionally shape, given the heavy cognitive load of visualizing and manipulating 3D form. Spatiotemporal processes like the flow of water over a landscape are even more challenging to understand and intentionally direct as they are dependent upon their context and require the simulation of forces like gravity and momentum. This cognitive work can be offloaded onto computers through 3D geospatial modeling, analysis, and simulation. Interacting with computers, however, can also be challenging, often requiring training and highly abstract thinking. Tangible computing - an emerging paradigm of human-computer interaction in which data is physically manifested so that users can feel it and directly manipulate it - aims to offload this added cognitive work onto the body. We have designed Tangible Landscape, a tangible interface powered by an open source geographic information system (GRASS GIS), so that users can naturally shape topography and interact with simulated processes with their hands in order to make observations, generate and test hypotheses, and make inferences about scientific phenomena in a rapid, iterative process. Conceptually Tangible Landscape couples a malleable physical model with a digital model of a landscape through a continuous cycle of 3D scanning, geospatial modeling, and projection. We ran a flow modeling experiment to test whether tangible interfaces like this can effectively enhance spatial performance by offloading cognitive processes onto computers and our bodies. We used hydrological simulations and statistics to quantitatively assess spatial performance. We found that Tangible Landscape enhanced 3D spatial performance and helped users understand water flow.

System Synthesis for Polymorphous Computing Architectures

DTIC Science & Technology

2002-02-01

G H F Proc 5 : 4 : 3 11 1 Figure 3. Self-timed execution. D C B F G H E D B H EA CG F D C B F G H E D B H EA CG F AProc 1 Proc 2...first-iteration actors denoted by T. D B H E CG F D C B F G H E D B H EA CG F A 18 T T T T Proc 3 Proc 4 Proc 5 Proc 1 Proc 2 1 T⁄ T trmin30 ture-mirror...Phase1Algo( , ) = transientReduction( ) Output T G S′ S G T S′ S S′ Figure 11. Pseudocode to find

Application of ECH to the study of transport in ITER baseline scenario-like discharges in DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pinsker, R. I.; Austin, M. E.; Ernst, D. R.

Recent DIII-D experiments in the ITER Baseline Scenario (IBS) have shown strong increases in fluctuations and correlated reduction of confinement associated with entering the electron-heating-dominated regime with strong electron cyclotron heating (ECH). The addition of 3.2 MW of 110 GHz EC power deposited at ρ~0.42 to IBS discharges with ~3 MW of neutral beam injection causes large increases in low-k and medium-k turbulent density fluctuations observed with Doppler backscatter (DBS), beam emission spectroscopy (BES) and phase-contrast imaging (PCI) diagnostics, correlated with decreases in the energy, particle, and momentum confinement times. Power balance calculations show the electron heat diffusivity χ emore » increases significantly in the mid-radius region 0.4« less

Application of ECH to the study of transport in ITER baseline scenario-like discharges in DIII-D

DOE PAGES

Pinsker, R. I.; Austin, M. E.; Ernst, D. R.; ...

2015-03-12

Recent DIII-D experiments in the ITER Baseline Scenario (IBS) have shown strong increases in fluctuations and correlated reduction of confinement associated with entering the electron-heating-dominated regime with strong electron cyclotron heating (ECH). The addition of 3.2 MW of 110 GHz EC power deposited at ρ~0.42 to IBS discharges with ~3 MW of neutral beam injection causes large increases in low-k and medium-k turbulent density fluctuations observed with Doppler backscatter (DBS), beam emission spectroscopy (BES) and phase-contrast imaging (PCI) diagnostics, correlated with decreases in the energy, particle, and momentum confinement times. Power balance calculations show the electron heat diffusivity χ emore » increases significantly in the mid-radius region 0.4« less

D4Z - a new renumbering for iterative solution of ground-water flow and solute- transport equations

USGS Publications Warehouse

Kipp, K.L.; Russell, T.F.; Otto, J.S.

1992-01-01

D4 zig-zag (D4Z) is a new renumbering scheme for producing a reduced matrix to be solved by an incomplete LU preconditioned, restarted conjugate-gradient iterative solver. By renumbering alternate diagonals in a zig-zag fashion, a very low sensitivity of convergence rate to renumbering direction is obtained. For two demonstration problems involving groundwater flow and solute transport, iteration counts are related to condition numbers and spectra of the reduced matrices.

3-D Forward modeling of Induced Polarization Effects of Transient Electromagnetic Method

NASA Astrophysics Data System (ADS)

Wu, Y.; Ji, Y.; Guan, S.; Li, D.; Wang, A.

2017-12-01

In transient electromagnetic (TEM) detection, Induced polarization (IP) effects are so important that they cannot be ignored. The authors simulate the three-dimensional (3-D) induced polarization effects in time-domain directly by applying the finite-difference time-domain method (FDTD) based on Cole-Cole model. Due to the frequency dispersion characteristics of the electrical conductivity, the computations of convolution in the generalized Ohm's law of fractional order system makes the forward modeling particularly complicated. Firstly, we propose a method to approximate the fractional order function of Cole-Cole model using a lower order rational transfer function based on error minimum theory in the frequency domain. In this section, two auxiliary variables are introduced to transform nonlinear least square fitting problem of the fractional order system into a linear programming problem, thus avoiding having to solve a system of equations and nonlinear problems. Secondly, the time-domain expression of Cole-Cole model is obtained by using Inverse Laplace transform. Then, for the calculation of Ohm's law, we propose an e-index auxiliary equation of conductivity to transform the convolution to non-convolution integral; in this section, the trapezoid rule is applied to compute the integral. We then substitute the recursion equation into Maxwell's equations to derive the iterative equations of electromagnetic field using the FDTD method. Finally, we finish the stimulation of 3-D model and evaluate polarization parameters. The results are compared with those obtained from the digital filtering solution of the analytical equation in the homogeneous half space, as well as with the 3-D model results from the auxiliary ordinary differential equation method (ADE). Good agreements are obtained across the three methods. In terms of the 3-D model, the proposed method has higher efficiency and lower memory requirements as execution times and memory usage were reduced by 20% compared with ADE method.

Modeling and Simulation of the ITER First Wall/Blanket Primary Heat Transfer System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ying, Alice; Popov, Emilian L

2011-01-01

ITER inductive power operation is modeled and simulated using a thermal-hydraulics system code (RELAP5) integrated with a 3-D CFD (SC-Tetra) code. The Primary Heat Transfer System (PHTS) functions are predicted together with the main parameters operational ranges. The control algorithm strategy and derivation are summarized as well. The First Wall and Blanket modules are the primary components of PHTS, used to remove the major part of the thermal heat from the plasma. The modules represent a set of flow channels in solid metal structure that serve to absorb the radiation heat and nuclear heating from the fusion reactions and tomore » provide shield for the vacuum vessel. The blanket modules are water cooled. The cooling is forced convective with constant blanket inlet temperature and mass flow rate. Three independent water loops supply coolant to the three blanket sectors. The main equipment of each loop consists of a pump, a steam pressurizer and a heat exchanger. A major feature of ITER is the pulsed operation. The plasma does not burn continuously, but on intervals with large periods of no power between them. This specific feature causes design challenges to accommodate the thermal expansion of the coolant during the pulse period and requires active temperature control to maintain a constant blanket inlet temperature.« less

The effect of pre-existing islands on disruption mitigation in MHD simulations of DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Izzo, V. A.

Locked-modes are the most likely cause of disruptions in ITER, so large islands are expected to be common when the ITER disruption mitigation system is deployed. MHD modeling of disruption mitigation by massive gas injection is carried out for DIII-D plasmas with stationary, pre-existing islands. Results show that the magnetic topology at the q=2 surface can affect the parallel spreading of injected impurities, and that, in particular, the break-up of large 2/1 islands into smaller 4/2 islands chains can favorably affect mitigation metrics. The direct imposition of a 4/2 mode is found to have similar results to the case inmore » which the 4/2 harmonic grows spontaneously.« less

The effect of pre-existing islands on disruption mitigation in MHD simulations of DIII-D

DOE PAGES

Izzo, V. A.

2017-02-27

Locked-modes are the most likely cause of disruptions in ITER, so large islands are expected to be common when the ITER disruption mitigation system is deployed. MHD modeling of disruption mitigation by massive gas injection is carried out for DIII-D plasmas with stationary, pre-existing islands. Results show that the magnetic topology at the q=2 surface can affect the parallel spreading of injected impurities, and that, in particular, the break-up of large 2/1 islands into smaller 4/2 islands chains can favorably affect mitigation metrics. The direct imposition of a 4/2 mode is found to have similar results to the case inmore » which the 4/2 harmonic grows spontaneously.« less

3D airborne EM modeling based on the spectral-element time-domain (SETD) method

NASA Astrophysics Data System (ADS)

Cao, X.; Yin, C.; Huang, X.; Liu, Y.; Zhang, B., Sr.; Cai, J.; Liu, L.

2017-12-01

In the field of 3D airborne electromagnetic (AEM) modeling, both finite-difference time-domain (FDTD) method and finite-element time-domain (FETD) method have limitations that FDTD method depends too much on the grids and time steps, while FETD requires large number of grids for complex structures. We propose a time-domain spectral-element (SETD) method based on GLL interpolation basis functions for spatial discretization and Backward Euler (BE) technique for time discretization. The spectral-element method is based on a weighted residual technique with polynomials as vector basis functions. It can contribute to an accurate result by increasing the order of polynomials and suppressing spurious solution. BE method is a stable tine discretization technique that has no limitation on time steps and can guarantee a higher accuracy during the iteration process. To minimize the non-zero number of sparse matrix and obtain a diagonal mass matrix, we apply the reduced order integral technique. A direct solver with its speed independent of the condition number is adopted for quickly solving the large-scale sparse linear equations system. To check the accuracy of our SETD algorithm, we compare our results with semi-analytical solutions for a three-layered earth model within the time lapse 10-6-10-2s for different physical meshes and SE orders. The results show that the relative errors for magnetic field B and magnetic induction are both around 3-5%. Further we calculate AEM responses for an AEM system over a 3D earth model in Figure 1. From numerical experiments for both 1D and 3D model, we draw the conclusions that: 1) SETD can deliver an accurate results for both dB/dt and B; 2) increasing SE order improves the modeling accuracy for early to middle time channels when the EM field diffuses fast so the high-order SE can model the detailed variation; 3) at very late time channels, increasing SE order has little improvement on modeling accuracy, but the time interval plays important roles. This research is supported by Key Program of National Natural Science Foundation of China (41530320), China Natural Science Foundation for Young Scientists (41404093), and Key National Research Project of China (2016YFC0303100, 2017YFC0601900). Figure 1: (a) AEM system over a 3D earth model; (b) magnetic field Bz; (c) magnetic induction dBz/dt.

3D Printing the Complete CubeSat

NASA Technical Reports Server (NTRS)

Kief, Craig

2015-01-01

The 3D Printing the Complete CubeSat project is designed to advance the state-of-the-art in 3D printing for CubeSat applications. Printing in 3D has the potential to increase reliability, reduce design iteration time and provide greater design flexibility in the areas of radiation mitigation, communications, propulsion, and wiring, among others. This project is investigating the possibility of including propulsion systems into the design of printed CubeSat components. One such concept, an embedded micro pulsed plasma thruster (mPPT), could provide auxiliary reaction control propulsion for a spacecraft as a means to desaturate momentum wheels.

Enabling co-simulation of tokamak plant models and plasma control systems

DOE PAGES

Walker, M. L.

2017-12-22

A system for connecting the Plasma Control System and a model of the tokamak Plant in closed loop co-simulation for plasma control development has been in routine use at DIII-D for more than 20 years and at other fusion labs that use variants of the DIII-D PCS for approximately the last decade. Here, co-simulation refers to the simultaneous execution of two independent codes with the exchange of data - Plant actuator commands and tokamak diagnostic data - between them during execution. Interest in this type of PCS-Plant simulation technology has also been growing recently at other fusion facilities. In fact,more » use of such closed loop control simulations is assumed to play an even larger role in the development of both the ITER Plasma Control System (PCS) and the experimental operation of the ITER device, where they will be used to support verification/validation of the PCS and also for ITER pulse schedule development and validation. We describe the key use cases that motivate the co-simulation capability and the features that must be provided by the Plasma Control System to support it. These features could be provided by the PCS itself or by a model of the PCS. If the PCS itself is chosen to provide them, there are requirements imposed on its architecture. If a PCS model is chosen, there are requirements imposed on the initial implementation of this simulation as well as long-term consequences for its continued development and maintenance. We describe these issues for each use case and discuss the relative merits of the two choices. Several examples are given illustrating uses of the co-simulation method to address problems of plasma control during the operation of DIII-D and of other devices that use the DIII-D PCS.« less

Enabling co-simulation of tokamak plant models and plasma control systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walker, M. L.

A system for connecting the Plasma Control System and a model of the tokamak Plant in closed loop co-simulation for plasma control development has been in routine use at DIII-D for more than 20 years and at other fusion labs that use variants of the DIII-D PCS for approximately the last decade. Here, co-simulation refers to the simultaneous execution of two independent codes with the exchange of data - Plant actuator commands and tokamak diagnostic data - between them during execution. Interest in this type of PCS-Plant simulation technology has also been growing recently at other fusion facilities. In fact,more » use of such closed loop control simulations is assumed to play an even larger role in the development of both the ITER Plasma Control System (PCS) and the experimental operation of the ITER device, where they will be used to support verification/validation of the PCS and also for ITER pulse schedule development and validation. We describe the key use cases that motivate the co-simulation capability and the features that must be provided by the Plasma Control System to support it. These features could be provided by the PCS itself or by a model of the PCS. If the PCS itself is chosen to provide them, there are requirements imposed on its architecture. If a PCS model is chosen, there are requirements imposed on the initial implementation of this simulation as well as long-term consequences for its continued development and maintenance. We describe these issues for each use case and discuss the relative merits of the two choices. Several examples are given illustrating uses of the co-simulation method to address problems of plasma control during the operation of DIII-D and of other devices that use the DIII-D PCS.« less

3D tomographic seismic imaging of the southern rupture barrier of the great Sumatra-Andaman 2005 earthquake

NASA Astrophysics Data System (ADS)

Vermeesch, P. M.; Henstock, T. J.; Lange, D.; McNeill, L. C.; Barton, P. J.; Tang, G.; Bull, J. M.; Tilmann, F.; Dean, S. M.; Djajadihardja, Y.; Permana, H.

2009-04-01

In 2008 a 3D onshore-offshore controlled-source seismic experiment was carried out in an area of 300 km x 400 km, centered on the southern termination of the great Sumatra-Andaman 2005 earthquake rupture. In the first part of cruise SO198 on R/V Sonne ~10000 airgun shots were fired into an array of 47 Ocean Bottom Seismometers (OBSs). A further ~50000 shots were fired into an array of 10 long-deployment OBSs. All shots were recorded on ~15 seismometers on the islands and more than 20 seismometers along the coast of Sumatra. An initial velocity model has been derived from 70132 first-arrival traveltimes from 45 OBSs, using the First-Arrival Seismic Tomography (FAST) inversion code developed by Zelt and Barton (1998). Root Mean Square traveltime misfit reduces from 1311 ms in the 1D starting model to 81 ms after 20 non-linear iterations. Offsets range between 0 and 265 km, with rays penetrating up to 28 km depth in the final model, hereby imaging the top of the subducting oceanic plate and revealing its complex 3D topography. Ray coverage is still being extended by including first-arrival traveltime picks from the landstations on the coast of Sumatra and the islands and from the 10 long-term deployment OBSs that will be recovered in January. The robustness and resolution of the final 3D model is examined by exploring different starting models, different inversion parameters and by carrying out checkerboard tests and synthetic tests. The resulting crustal 3D velocity model will allow us to explore the nature and physical cause of the rupture barrier of the 2005 great earthquake. Comparison with a similar dataset and subsequent 3D velocity model acquired at the boundary between the 2004 and 2005 earthquakes will provide important insights into the segmentation of the Sumatra subduction zone and the dynamics of its great earthquakes. Zelt, C. A. and P. J. Barton (1998). Three-dimensional seismic refraction tomography: A comparison of two methods applied to data from the Faroe Basin. Journal of Geophysical Research 103: 7187-7210.

Knowledge-based iterative model reconstruction: comparative image quality and radiation dose with a pediatric computed tomography phantom.

PubMed

Ryu, Young Jin; Choi, Young Hun; Cheon, Jung-Eun; Ha, Seongmin; Kim, Woo Sun; Kim, In-One

2016-03-01

CT of pediatric phantoms can provide useful guidance to the optimization of knowledge-based iterative reconstruction CT. To compare radiation dose and image quality of CT images obtained at different radiation doses reconstructed with knowledge-based iterative reconstruction, hybrid iterative reconstruction and filtered back-projection. We scanned a 5-year anthropomorphic phantom at seven levels of radiation. We then reconstructed CT data with knowledge-based iterative reconstruction (iterative model reconstruction [IMR] levels 1, 2 and 3; Philips Healthcare, Andover, MA), hybrid iterative reconstruction (iDose(4), levels 3 and 7; Philips Healthcare, Andover, MA) and filtered back-projection. The noise, signal-to-noise ratio and contrast-to-noise ratio were calculated. We evaluated low-contrast resolutions and detectability by low-contrast targets and subjective and objective spatial resolutions by the line pairs and wire. With radiation at 100 peak kVp and 100 mAs (3.64 mSv), the relative doses ranged from 5% (0.19 mSv) to 150% (5.46 mSv). Lower noise and higher signal-to-noise, contrast-to-noise and objective spatial resolution were generally achieved in ascending order of filtered back-projection, iDose(4) levels 3 and 7, and IMR levels 1, 2 and 3, at all radiation dose levels. Compared with filtered back-projection at 100% dose, similar noise levels were obtained on IMR level 2 images at 24% dose and iDose(4) level 3 images at 50% dose, respectively. Regarding low-contrast resolution, low-contrast detectability and objective spatial resolution, IMR level 2 images at 24% dose showed comparable image quality with filtered back-projection at 100% dose. Subjective spatial resolution was not greatly affected by reconstruction algorithm. Reduced-dose IMR obtained at 0.92 mSv (24%) showed similar image quality to routine-dose filtered back-projection obtained at 3.64 mSv (100%), and half-dose iDose(4) obtained at 1.81 mSv.

Development of a real-time system for ITER first wall heat load control

NASA Astrophysics Data System (ADS)

Anand, Himank; de Vries, Peter; Gribov, Yuri; Pitts, Richard; Snipes, Joseph; Zabeo, Luca

2017-10-01

The steady state heat flux on the ITER first wall (FW) panels are limited by the heat removal capacity of the water cooling system. In case of off-normal events (e.g. plasma displacement during H-L transitions), the heat loads are predicted to exceed the design limits (2-4.7 MW/m2). Intense heat loads are predicted on the FW, even well before the burning plasma phase. Thus, a real-time (RT) FW heat load control system is mandatory from early plasma operation of the ITER tokamak. A heat load estimator based on the RT equilibrium reconstruction has been developed for the plasma control system (PCS). A scheme, estimating the energy state for prescribed gaps defined as the distance between the last closed flux surface (LCFS)/separatrix and the FW is presented. The RT energy state is determined by the product of a weighted function of gap distance and the power crossing the plasma boundary. In addition, a heat load estimator assuming a simplified FW geometry and parallel heat transport model in the scrape-off layer (SOL), benchmarked against a full 3-D magnetic field line tracer is also presented.

Shattered Pellet Injection Simulations With NIMROD

NASA Astrophysics Data System (ADS)

Kim, Charlson; Parks, Paul; Lao, Lang; Lehnan, Michael; Loarte, Alberto; Izzo, Valerie; Nimrod Team

2017-10-01

Shattered Pellet Injection (SPI) will be the Disruption Mitigation System in ITER. SPI propels a cryo-pellet of high-Z and deuterium into a sharp bend of the flight tube, shattering the pellet into a plume of shards. These shards are injected into the plasma to quench it and mitigate forces and heat loads that may damage in-vessel components. We use NIMROD to perform 3-D nonlinear MHD simulations of SPI to study the thermal quench. This work builds upon prior Massive Gas Injection (MGI) studies by Izzo. A Particle-in-Cell (PIC) model is implemented to mimic the shards, providing a discrete moving source. Observations indicate that the quench proceeds in two phases. Initially, the outer plasma is shed via interchange-like instabilities while preserving the core temperature. This results in a steep gradient and triggers the second phase, an external kink-like event that collapses the core. We report on the radiation efficiency and toroidal peaking as well as fueling efficiency and other metrics that assess the efficacy of the SPI system. Work supported by GA ITER Contract ITER/CT/14/4300001108 and US DOE DE-FG02-95ER54309.

Marine Controlled-Source Electromagnetic 2D Inversion for synthetic models.

NASA Astrophysics Data System (ADS)

Liu, Y.; Li, Y.

2016-12-01

We present a 2D inverse algorithm for frequency domain marine controlled-source electromagnetic (CSEM) data, which is based on the regularized Gauss-Newton approach. As a forward solver, our parallel adaptive finite element forward modeling program is employed. It is a self-adaptive, goal-oriented grid refinement algorithm in which a finite element analysis is performed on a sequence of refined meshes. The mesh refinement process is guided by a dual error estimate weighting to bias refinement towards elements that affect the solution at the EM receiver locations. With the use of the direct solver (MUMPS), we can effectively compute the electromagnetic fields for multi-sources and parametric sensitivities. We also implement the parallel data domain decomposition approach of Key and Ovall (2011), with the goal of being able to compute accurate responses in parallel for complicated models and a full suite of data parameters typical of offshore CSEM surveys. All minimizations are carried out by using the Gauss-Newton algorithm and model perturbations at each iteration step are obtained by using the Inexact Conjugate Gradient iteration method. Synthetic test inversions are presented.

Quantification of 2D elemental distribution maps of intermediate-thick biological sections by low energy synchrotron μ-X-ray fluorescence spectrometry

NASA Astrophysics Data System (ADS)

Kump, P.; Vogel-Mikuš, K.

2018-05-01

Two fundamental-parameter (FP) based models for quantification of 2D elemental distribution maps of intermediate-thick biological samples by synchrotron low energy μ-X-ray fluorescence spectrometry (SR-μ-XRF) are presented and applied to the elemental analysis in experiments with monochromatic focused photon beam excitation at two low energy X-ray fluorescence beamlines—TwinMic, Elettra Sincrotrone Trieste, Italy, and ID21, ESRF, Grenoble, France. The models assume intermediate-thick biological samples composed of measured elements, the sources of the measurable spectral lines, and by the residual matrix, which affects the measured intensities through absorption. In the first model a fixed residual matrix of the sample is assumed, while in the second model the residual matrix is obtained by the iteration refinement of elemental concentrations and an adjusted residual matrix. The absorption of the incident focused beam in the biological sample at each scanned pixel position, determined from the output of a photodiode or a CCD camera, is applied as a control in the iteration procedure of quantification.

Medical image segmentation by combining graph cuts and oriented active appearance models.

PubMed

Chen, Xinjian; Udupa, Jayaram K; Bagci, Ulas; Zhuge, Ying; Yao, Jianhua

2012-04-01

In this paper, we propose a novel method based on a strategic combination of the active appearance model (AAM), live wire (LW), and graph cuts (GCs) for abdominal 3-D organ segmentation. The proposed method consists of three main parts: model building, object recognition, and delineation. In the model building part, we construct the AAM and train the LW cost function and GC parameters. In the recognition part, a novel algorithm is proposed for improving the conventional AAM matching method, which effectively combines the AAM and LW methods, resulting in the oriented AAM (OAAM). A multiobject strategy is utilized to help in object initialization. We employ a pseudo-3-D initialization strategy and segment the organs slice by slice via a multiobject OAAM method. For the object delineation part, a 3-D shape-constrained GC method is proposed. The object shape generated from the initialization step is integrated into the GC cost computation, and an iterative GC-OAAM method is used for object delineation. The proposed method was tested in segmenting the liver, kidneys, and spleen on a clinical CT data set and also on the MICCAI 2007 Grand Challenge liver data set. The results show the following: 1) The overall segmentation accuracy of true positive volume fraction TPVF > 94.3% and false positive volume fraction can be achieved; 2) the initialization performance can be improved by combining the AAM and LW; 3) the multiobject strategy greatly facilitates initialization; 4) compared with the traditional 3-D AAM method, the pseudo-3-D OAAM method achieves comparable performance while running 12 times faster; and 5) the performance of the proposed method is comparable to state-of-the-art liver segmentation algorithm. The executable version of the 3-D shape-constrained GC method with a user interface can be downloaded from http://xinjianchen.wordpress.com/research/.

Simultaneous PET and Multispectral 3-Dimensional Fluorescence Optical Tomography Imaging System

PubMed Central

Li, Changqing; Yang, Yongfeng; Mitchell, Gregory S.; Cherry, Simon R.

2015-01-01

Integrated PET and 3-dimensional (3D) fluorescence optical tomography (FOT) imaging has unique and attractive features for in vivo molecular imaging applications. We have designed, built, and evaluated a simultaneous PET and 3D FOT system. The design of the FOT system is compatible with many existing small-animal PET scanners. Methods The 3D FOT system comprises a novel conical mirror that is used to view the whole-body surface of a mouse with an electron-multiplying charge-coupled device camera when a collimated laser beam is projected on the mouse to stimulate fluorescence. The diffusion equation was used to model the propagation of optical photons inside the mouse body, and 3D fluorescence images were reconstructed iteratively from the fluorescence intensity measurements measured from the surface of the mouse. Insertion of the conical mirror into the gantry of a small-animal PET scanner allowed simultaneous PET and 3D FOT imaging. Results The mutual interactions between PET and 3D FOT were evaluated experimentally. PET has negligible effects on 3D FOT performance. The inserted conical mirror introduces a reduction in the sensitivity and noise-equivalent count rate of the PET system and increases the scatter fraction. PET–FOT phantom experiments were performed. An in vivo experiment using both PET and FOT was also performed. Conclusion Phantom and in vivo experiments demonstrate the feasibility of simultaneous PET and 3D FOT imaging. The first in vivo simultaneous PET–FOT results are reported. PMID:21810591

A 3D-printed anatomical pancreas and kidney phantom for optimizing SPECT/CT reconstruction settings in beta cell imaging using 111In-exendin.

PubMed

Woliner-van der Weg, Wietske; Deden, Laura N; Meeuwis, Antoi P W; Koenrades, Maaike; Peeters, Laura H C; Kuipers, Henny; Laanstra, Geert Jan; Gotthardt, Martin; Slump, Cornelis H; Visser, Eric P

2016-12-01

Quantitative single photon emission computed tomography (SPECT) is challenging, especially for pancreatic beta cell imaging with 111 In-exendin due to high uptake in the kidneys versus much lower uptake in the nearby pancreas. Therefore, we designed a three-dimensionally (3D) printed phantom representing the pancreas and kidneys to mimic the human situation in beta cell imaging. The phantom was used to assess the effect of different reconstruction settings on the quantification of the pancreas uptake for two different, commercially available software packages. 3D-printed, hollow pancreas and kidney compartments were inserted into the National Electrical Manufacturers Association (NEMA) NU2 image quality phantom casing. These organs and the background compartment were filled with activities simulating relatively high and low pancreatic 111 In-exendin uptake for, respectively, healthy humans and type 1 diabetes patients. Images were reconstructed using Siemens Flash 3D and Hermes Hybrid Recon, with varying numbers of iterations and subsets and corrections. Images were visually assessed on homogeneity and artefacts, and quantitatively by the pancreas-to-kidney activity concentration ratio. Phantom images were similar to clinical images and showed comparable artefacts. All corrections were required to clearly visualize the pancreas. Increased numbers of subsets and iterations improved the quantitative performance but decreased homogeneity both in the pancreas and the background. Based on the phantom analyses, the Hybrid Recon reconstruction with 6 iterations and 16 subsets was found to be most suitable for clinical use. This work strongly contributed to quantification of pancreatic 111 In-exendin uptake. It showed how clinical images of 111 In-exendin can be interpreted and enabled selection of the most appropriate protocol for clinical use.

A Qualitative Study of the Curricula for the Doctor of Education (EdD) Degree in Higher Education Programs

ERIC Educational Resources Information Center

Holland, Rebecca C.

2017-01-01

Using the Carnegie Project for the Education Doctorate (CPED) as a model curricular framework, this study sought to determine the structures and functions of well-run and respected non-CPED participating higher education administration EdD curricula. The qualitative approach was used during two iterations of focus groups to learn the professional…

Divertor extreme ultraviolet (EUV) survey spectroscopy in DIII-D

NASA Astrophysics Data System (ADS)

McLean, Adam; Allen, Steve; Ellis, Ron; Jarvinen, Aaro; Soukhanovskii, Vlad; Boivin, Rejean; Gonzales, Eduardo; Holmes, Ian; Kulchar, James; Leonard, Anthony; Williams, Bob; Taussig, Doug; Thomas, Dan; Marcy, Grant

2017-10-01

An extreme ultraviolet spectrograph measuring resonant emissions of D and C in the lower divertor has been added to DIII-D to help resolve an 2X discrepancy between bolometrically measured radiated power and that predicted by boundary codes for DIII-D, JET and ASDEX-U. With 290 and 450 gr/mm gratings, the DivSPRED spectrometer, an 0.3 m flat-field McPherson model 251, measures ground state transitions for D (the Lyman series) and C (e.g., C IV, 155 nm) which account for >75% of radiated power in the divertor. Combined with Thomson scattering and imaging in the DIII-D divertor, measurements of position, temperature and fractional power emission from plasma components are made and compared to UEDGE/SOLPS-ITER. Mechanical, optical, electrical, vacuum, and shielding aspects of DivSPRED are presented. Work supported under USDOE Cooperative Agreement DE-FC02-04ER54698 and DE-AC52-07NA27344, and by the LLNL Laboratory Directed R&D Program, project #17-ERD-020.

Design and RF measurements of a 5 GHz 500 kW window for the ITER LHCD system

NASA Astrophysics Data System (ADS)

Hillairet, J.; Achard, J.; Bae, Y. S.; Bernard, J. M.; Dechambre, N.; Delpech, L.; Ekedahl, A.; Faure, N.; Goniche, M.; Kim, J.; Larroque, S.; Magne, R.; Marfisi, L.; Namkung, W.; Park, H.; Park, S.; Poli, S.; Vulliez, K.

2014-02-01

CEA/IRFM is conducting R&D efforts in order to validate the critical RF components of the 5 GHz ITER LHCD system, which is expected to transmit 20 MW of RF power to the plasma. Two 5 GHz 500 kW BeO pill-box type window prototypes have been manufactured in 2012 by the PMB Company, in close collaboration with CEA/IRFM. Both windows have been validated at low power, showing good agreement between measured and modeling, with a return loss better than 32 dB and an insertion loss below 0.05 dB. This paper reports on the window RF design and the low power measurements. The high power tests up to 500kW have been carried out in March 2013 in collaboration with NFRI. Results of these tests are also reported.

An Omnidirectional Vision Sensor Based on a Spherical Mirror Catadioptric System.

PubMed

Barone, Sandro; Carulli, Marina; Neri, Paolo; Paoli, Alessandro; Razionale, Armando Viviano

2018-01-31

The combination of mirrors and lenses, which defines a catadioptric sensor, is widely used in the computer vision field. The definition of a catadioptric sensors is based on three main features: hardware setup, projection modelling and calibration process. In this paper, a complete description of these aspects is given for an omnidirectional sensor based on a spherical mirror. The projection model of a catadioptric system can be described by the forward projection task (FP, from 3D scene point to 2D pixel coordinates) and backward projection task (BP, from 2D coordinates to 3D direction of the incident light). The forward projection of non-central catadioptric vision systems, typically obtained by using curved mirrors, is usually modelled by using a central approximation and/or by adopting iterative approaches. In this paper, an analytical closed-form solution to compute both forward and backward projection for a non-central catadioptric system with a spherical mirror is presented. In particular, the forward projection is reduced to a 4th order polynomial by determining the reflection point on the mirror surface through the intersection between a sphere and an ellipse. A matrix format of the implemented models, suitable for fast point clouds handling, is also described. A robust calibration procedure is also proposed and applied to calibrate a catadioptric sensor by determining the mirror radius and center with respect to the camera.

An Omnidirectional Vision Sensor Based on a Spherical Mirror Catadioptric System

PubMed Central

Barone, Sandro; Carulli, Marina; Razionale, Armando Viviano

2018-01-01

The combination of mirrors and lenses, which defines a catadioptric sensor, is widely used in the computer vision field. The definition of a catadioptric sensors is based on three main features: hardware setup, projection modelling and calibration process. In this paper, a complete description of these aspects is given for an omnidirectional sensor based on a spherical mirror. The projection model of a catadioptric system can be described by the forward projection task (FP, from 3D scene point to 2D pixel coordinates) and backward projection task (BP, from 2D coordinates to 3D direction of the incident light). The forward projection of non-central catadioptric vision systems, typically obtained by using curved mirrors, is usually modelled by using a central approximation and/or by adopting iterative approaches. In this paper, an analytical closed-form solution to compute both forward and backward projection for a non-central catadioptric system with a spherical mirror is presented. In particular, the forward projection is reduced to a 4th order polynomial by determining the reflection point on the mirror surface through the intersection between a sphere and an ellipse. A matrix format of the implemented models, suitable for fast point clouds handling, is also described. A robust calibration procedure is also proposed and applied to calibrate a catadioptric sensor by determining the mirror radius and center with respect to the camera. PMID:29385051

Mixed Material Plasma-Surface Interactions in ITER: Recent Results from the PISCES Group

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tynan, George R.; Baldwin, Matthew; Doerner, Russell

This paper summarizes recent PISCES studies focused on the effects associated with mixed species plasmas that are similar in composition to what one might expect in ITER. Formation of nanometer scale whiskerlike features occurs in W surfaces exposed to pure He and mixed D/He plasmas and appears to be associated with the formation of He nanometer-scaled bubbles in the W surface. Studies of Be-W alloy formation in Be-seeded D plasmas suggest that this process may be important in ITER all metal wall operational scenarios. Studies also suggest that BeD formation via chemical sputtering of Be walls may be an importantmore » first wall erosion mechanism. D retention in ITER mixed materials has also been studied. The D release behavior from beryllium co-deposits does not appear to be a diffusion dominated process, but instead is consistent with thermal release from a number of variable trapping energy sites. As a result, the amount of tritium remaining in codeposits in ITER after baking will be determined by the maximum temperature achieved, rather than by the duration of the baking cycle.« less

SU-F-I-49: Vendor-Independent, Model-Based Iterative Reconstruction On a Rotating Grid with Coordinate-Descent Optimization for CT Imaging Investigations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Young, S; Hoffman, J; McNitt-Gray, M

Purpose: Iterative reconstruction methods show promise for improving image quality and lowering the dose in helical CT. We aim to develop a novel model-based reconstruction method that offers potential for dose reduction with reasonable computation speed and storage requirements for vendor-independent reconstruction from clinical data on a normal desktop computer. Methods: In 2012, Xu proposed reconstructing on rotating slices to exploit helical symmetry and reduce the storage requirements for the CT system matrix. Inspired by this concept, we have developed a novel reconstruction method incorporating the stored-system-matrix approach together with iterative coordinate-descent (ICD) optimization. A penalized-least-squares objective function with amore » quadratic penalty term is solved analytically voxel-by-voxel, sequentially iterating along the axial direction first, followed by the transaxial direction. 8 in-plane (transaxial) neighbors are used for the ICD algorithm. The forward problem is modeled via a unique approach that combines the principle of Joseph’s method with trilinear B-spline interpolation to enable accurate reconstruction with low storage requirements. Iterations are accelerated with multi-CPU OpenMP libraries. For preliminary evaluations, we reconstructed (1) a simulated 3D ellipse phantom and (2) an ACR accreditation phantom dataset exported from a clinical scanner (Definition AS, Siemens Healthcare). Image quality was evaluated in the resolution module. Results: Image quality was excellent for the ellipse phantom. For the ACR phantom, image quality was comparable to clinical reconstructions and reconstructions using open-source FreeCT-wFBP software. Also, we did not observe any deleterious impact associated with the utilization of rotating slices. The system matrix storage requirement was only 4.5GB, and reconstruction time was 50 seconds per iteration. Conclusion: Our reconstruction method shows potential for furthering research in low-dose helical CT, in particular as part of our ongoing development of an acquisition/reconstruction pipeline for generating images under a wide range of conditions. Our algorithm will be made available open-source as “FreeCT-ICD”. NIH U01 CA181156; Disclosures (McNitt-Gray): Institutional research agreement, Siemens Healthcare; Past recipient, research grant support, Siemens Healthcare; Consultant, Toshiba America Medical Systems; Consultant, Samsung Electronics.« less

Reduction of asymmetric wall force in ITER disruptions with fast current quench

NASA Astrophysics Data System (ADS)

Strauss, H.

2018-02-01

One of the problems caused by disruptions in tokamaks is the asymmetric electromechanical force produced in conducting structures surrounding the plasma. The asymmetric wall force in ITER asymmetric vertical displacement event (AVDE) disruptions is calculated in nonlinear 3D MHD simulations. It is found that the wall force can vary by almost an order of magnitude, depending on the ratio of the current quench time to the resistive wall magnetic penetration time. In ITER, this ratio is relatively low, resulting in a low asymmetric wall force. In JET, this ratio is relatively high, resulting in a high asymmetric wall force. Previous extrapolations based on JET measurements have greatly overestimated the ITER wall force. It is shown that there are two limiting regimes of AVDEs, and it is explained why the asymmetric wall force is different in the two limits.

HipMatch: an object-oriented cross-platform program for accurate determination of cup orientation using 2D-3D registration of single standard X-ray radiograph and a CT volume.

PubMed

Zheng, Guoyan; Zhang, Xuan; Steppacher, Simon D; Murphy, Stephen B; Siebenrock, Klaus A; Tannast, Moritz

2009-09-01

The widely used procedure of evaluation of cup orientation following total hip arthroplasty using single standard anteroposterior (AP) radiograph is known inaccurate, largely due to the wide variability in individual pelvic orientation relative to X-ray plate. 2D-3D image registration methods have been introduced for an accurate determination of the post-operative cup alignment with respect to an anatomical reference extracted from the CT data. Although encouraging results have been reported, their extensive usage in clinical routine is still limited. This may be explained by their requirement of a CAD model of the prosthesis, which is often difficult to be organized from the manufacturer due to the proprietary issue, and by their requirement of either multiple radiographs or a radiograph-specific calibration, both of which are not available for most retrospective studies. To address these issues, we developed and validated an object-oriented cross-platform program called "HipMatch" where a hybrid 2D-3D registration scheme combining an iterative landmark-to-ray registration with a 2D-3D intensity-based registration was implemented to estimate a rigid transformation between a pre-operative CT volume and the post-operative X-ray radiograph for a precise estimation of cup alignment. No CAD model of the prosthesis is required. Quantitative and qualitative results evaluated on cadaveric and clinical datasets are given, which indicate the robustness and the accuracy of the program. HipMatch is written in object-oriented programming language C++ using cross-platform software Qt (TrollTech, Oslo, Norway), VTK, and Coin3D and is transportable to any platform.

Multitasking 3-D forward modeling using high-order finite difference methods on the Cray X-MP/416

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terki-Hassaine, O.; Leiss, E.L.

1988-01-01

The CRAY X-MP/416 was used to multitask 3-D forward modeling by the high-order finite difference method. Flowtrace analysis reveals that the most expensive operation in the unitasked program is a matrix vector multiplication. The in-core and out-of-core versions of a reentrant subroutine can perform any fraction of the matrix vector multiplication independently, a pattern compatible with multitasking. The matrix vector multiplication routine can be distributed over two to four processors. The rest of the program utilizes the microtasking feature that lets the system treat independent iterations of DO-loops as subtasks to be performed by any available processor. The availability ofmore » the Solid-State Storage Device (SSD) meant the I/O wait time was virtually zero. A performance study determined a theoretical speedup, taking into account the multitasking overhead. Multitasking programs utilizing both macrotasking and microtasking features obtained actual speedups that were approximately 80% of the ideal speedup.« less

FAST SIMULATION OF SOLID TUMORS THERMAL ABLATION TREATMENTS WITH A 3D REACTION DIFFUSION MODEL *

PubMed Central

BERTACCINI, DANIELE; CALVETTI, DANIELA

2007-01-01

An efficient computational method for near real-time simulation of thermal ablation of tumors via radio frequencies is proposed. Model simulations of the temperature field in a 3D portion of tissue containing the tumoral mass for different patterns of source heating can be used to design the ablation procedure. The availability of a very efficient computational scheme makes it possible update the predicted outcome of the procedure in real time. In the algorithms proposed here a discretization in space of the governing equations is followed by an adaptive time integration based on implicit multistep formulas. A modification of the ode15s MATLAB function which uses Krylov space iterative methods for the solution of for the linear systems arising at each integration step makes it possible to perform the simulations on standard desktop for much finer grids than using the built-in ode15s. The proposed algorithm can be applied to a wide class of nonlinear parabolic differential equations. PMID:17173888

Measured vs. Predicted Pedestal Pressure During RMP ELM Control in DIII-D

NASA Astrophysics Data System (ADS)

Zywicki, Bailey; Fenstermacher, Max; Groebner, Richard; Meneghini, Orso

2017-10-01

From database analysis of DIII-D plasmas with Resonant Magnetic Perturbations (RMPs) for ELM control, we will compare the experimental pedestal pressure (p_ped) to EPED code predictions and present the dependence of any p_ped differences from EPED on RMP parameters not included in the EPED model e.g. RMP field strength, toroidal and poloidal spectrum etc. The EPED code, based on Peeling-Ballooning and Kinetic Ballooning instability constraints, will also be used by ITER to predict the H-mode p_ped without RMPs. ITER plans to use RMPs as an effective ELM control method. The need to control ELMs in ITER is of the utmost priority, as it directly correlates to the lifetime of the plasma facing components. An accurate means of determining the impact of RMP ELM control on the p_ped is needed, because the device fusion power is strongly dependent on p_ped. With this new collection of data, we aim to provide guidance to predictions of the ITER pedestal during RMP ELM control that can be incorporated in a future predictive code. Work supported in part by US DoE under the Science Undergraduate Laboratory Internship (SULI) program and under DE-FC02-04ER54698, and DE-AC52-07NA27344.

Parallel goal-oriented adaptive finite element modeling for 3D electromagnetic exploration

NASA Astrophysics Data System (ADS)

Zhang, Y.; Key, K.; Ovall, J.; Holst, M.

2014-12-01

We present a parallel goal-oriented adaptive finite element method for accurate and efficient electromagnetic (EM) modeling of complex 3D structures. An unstructured tetrahedral mesh allows this approach to accommodate arbitrarily complex 3D conductivity variations and a priori known boundaries. The total electric field is approximated by the lowest order linear curl-conforming shape functions and the discretized finite element equations are solved by a sparse LU factorization. Accuracy of the finite element solution is achieved through adaptive mesh refinement that is performed iteratively until the solution converges to the desired accuracy tolerance. Refinement is guided by a goal-oriented error estimator that uses a dual-weighted residual method to optimize the mesh for accurate EM responses at the locations of the EM receivers. As a result, the mesh refinement is highly efficient since it only targets the elements where the inaccuracy of the solution corrupts the response at the possibly distant locations of the EM receivers. We compare the accuracy and efficiency of two approaches for estimating the primary residual error required at the core of this method: one uses local element and inter-element residuals and the other relies on solving a global residual system using a hierarchical basis. For computational efficiency our method follows the Bank-Holst algorithm for parallelization, where solutions are computed in subdomains of the original model. To resolve the load-balancing problem, this approach applies a spectral bisection method to divide the entire model into subdomains that have approximately equal error and the same number of receivers. The finite element solutions are then computed in parallel with each subdomain carrying out goal-oriented adaptive mesh refinement independently. We validate the newly developed algorithm by comparison with controlled-source EM solutions for 1D layered models and with 2D results from our earlier 2D goal oriented adaptive refinement code named MARE2DEM. We demonstrate the performance and parallel scaling of this algorithm on a medium-scale computing cluster with a marine controlled-source EM example that includes a 3D array of receivers located over a 3D model that includes significant seafloor bathymetry variations and a heterogeneous subsurface.

Extending the physics basis of quiescent H-mode toward ITER relevant parameters

DOE PAGES

Solomon, W. M.; Burrell, K. H.; Fenstermacher, M. E.; ...

2015-06-26

Recent experiments on DIII-D have addressed several long-standing issues needed to establish quiescent H-mode (QH-mode) as a viable operating scenario for ITER. In the past, QH-mode was associated with low density operation, but has now been extended to high normalized densities compatible with operation envisioned for ITER. Through the use of strong shaping, QH-mode plasmas have been maintained at high densities, both absolute (more » $$\\bar{n}$$ e ≈ 7 × 10 19 m ₋3) and normalized Greenwald fraction ($$\\bar{n}$$ e/n G > 0.7). In these plasmas, the pedestal can evolve to very high pressure and edge current as the density is increased. High density QH-mode operation with strong shaping has allowed access to a previously predicted regime of very high pedestal dubbed “Super H-mode”. Calculations of the pedestal height and width from the EPED model are quantitatively consistent with the experimentally observed density evolution. The confirmation of the shape dependence of the maximum density threshold for QH-mode helps validate the underlying theoretical model of peeling- ballooning modes for ELM stability. In general, QH-mode is found to achieve ELM- stable operation while maintaining adequate impurity exhaust, due to the enhanced impurity transport from an edge harmonic oscillation, thought to be a saturated kink- peeling mode driven by rotation shear. In addition, the impurity confinement time is not affected by rotation, even though the energy confinement time and measured E×B shear are observed to increase at low toroidal rotation. Together with demonstrations of high beta, high confinement and low q 95 for many energy confinement times, these results suggest QH-mode as a potentially attractive operating scenario for the ITER Q=10 mission.« less

Fast wave direct electron heating in advanced inductive and ITER baseline scenario discharges in DIII-D

DOE PAGES

Pinsker, R. I.; Austin, M. E.; Diem, S. J.; ...

2014-02-12

Fast Wave (FW) heating and electron cyclotron heating (ECH) are used in the DIII-D tokamak to study plasmas with low applied torque and dominant electron heating characteristic of burning plasmas. FW heating via direct electron damping has reached the 2.5 MW level in high performance ELMy H-mode plasmas. In Advanced Inductive (AI) plasmas, core FW heating was found to be comparable to that of ECH, consistent with the excellent first-pass absorption of FWs predicted by ray-tracing models at high electron beta. FW heating at the ~2 MW level to ELMy H-mode discharges in the ITER Baseline Scenario (IBS) showed unexpectedlymore » strong absorption of FW power by injected neutral beam (NB) ions, indicated by significant enhancement of the D-D neutron rate, while the intended absorption on core electrons appeared rather weak. As a result, the AI and IBS discharges are compared in an effort to identify the causes of the different response to FWs.« less

Fast wave direct electron heating in advanced inductive and ITER baseline scenario discharges in DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pinsker, R. I.; Jackson, G. L.; Luce, T. C.

Fast Wave (FW) heating and electron cyclotron heating (ECH) are used in the DIII-D tokamak to study plasmas with low applied torque and dominant electron heating characteristic of burning plasmas. FW heating via direct electron damping has reached the 2.5 MW level in high performance ELMy H-mode plasmas. In Advanced Inductive (AI) plasmas, core FW heating was found to be comparable to that of ECH, consistent with the excellent first-pass absorption of FWs predicted by ray-tracing models at high electron beta. FW heating at the ∼2 MW level to ELMy H-mode discharges in the ITER Baseline Scenario (IBS) showed unexpectedlymore » strong absorption of FW power by injected neutral beam (NB) ions, indicated by significant enhancement of the D-D neutron rate, while the intended absorption on core electrons appeared rather weak. The AI and IBS discharges are compared in an effort to identify the causes of the different response to FWs.« less

Fast wave direct electron heating in advanced inductive and ITER baseline scenario discharges in DIII-D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pinsker, R. I.; Austin, M. E.; Diem, S. J.

Fast Wave (FW) heating and electron cyclotron heating (ECH) are used in the DIII-D tokamak to study plasmas with low applied torque and dominant electron heating characteristic of burning plasmas. FW heating via direct electron damping has reached the 2.5 MW level in high performance ELMy H-mode plasmas. In Advanced Inductive (AI) plasmas, core FW heating was found to be comparable to that of ECH, consistent with the excellent first-pass absorption of FWs predicted by ray-tracing models at high electron beta. FW heating at the ~2 MW level to ELMy H-mode discharges in the ITER Baseline Scenario (IBS) showed unexpectedlymore » strong absorption of FW power by injected neutral beam (NB) ions, indicated by significant enhancement of the D-D neutron rate, while the intended absorption on core electrons appeared rather weak. As a result, the AI and IBS discharges are compared in an effort to identify the causes of the different response to FWs.« less

WE-G-207-06: 3D Fluoroscopic Image Generation From Patient-Specific 4DCBCT-Based Motion Models Derived From Physical Phantom and Clinical Patient Images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dhou, S; Cai, W; Hurwitz, M

2015-06-15

Purpose: Respiratory-correlated cone-beam CT (4DCBCT) images acquired immediately prior to treatment have the potential to represent patient motion patterns and anatomy during treatment, including both intra- and inter-fractional changes. We develop a method to generate patient-specific motion models based on 4DCBCT images acquired with existing clinical equipment and used to generate time varying volumetric images (3D fluoroscopic images) representing motion during treatment delivery. Methods: Motion models are derived by deformably registering each 4DCBCT phase to a reference phase, and performing principal component analysis (PCA) on the resulting displacement vector fields. 3D fluoroscopic images are estimated by optimizing the resulting PCAmore » coefficients iteratively through comparison of the cone-beam projections simulating kV treatment imaging and digitally reconstructed radiographs generated from the motion model. Patient and physical phantom datasets are used to evaluate the method in terms of tumor localization error compared to manually defined ground truth positions. Results: 4DCBCT-based motion models were derived and used to generate 3D fluoroscopic images at treatment time. For the patient datasets, the average tumor localization error and the 95th percentile were 1.57 and 3.13 respectively in subsets of four patient datasets. For the physical phantom datasets, the average tumor localization error and the 95th percentile were 1.14 and 2.78 respectively in two datasets. 4DCBCT motion models are shown to perform well in the context of generating 3D fluoroscopic images due to their ability to reproduce anatomical changes at treatment time. Conclusion: This study showed the feasibility of deriving 4DCBCT-based motion models and using them to generate 3D fluoroscopic images at treatment time in real clinical settings. 4DCBCT-based motion models were found to account for the 3D non-rigid motion of the patient anatomy during treatment and have the potential to localize tumor and other patient anatomical structures at treatment time even when inter-fractional changes occur. This project was supported, in part, through a Master Research Agreement with Varian Medical Systems, Inc., Palo Alto, CA. The project was also supported, in part, by Award Number R21CA156068 from the National Cancer Institute.« less

Novel and powerful 3D adaptive crisp active contour method applied in the segmentation of CT lung images.

PubMed

Rebouças Filho, Pedro Pedrosa; Cortez, Paulo César; da Silva Barros, Antônio C; C Albuquerque, Victor Hugo; R S Tavares, João Manuel

2017-01-01

The World Health Organization estimates that 300 million people have asthma, 210 million people have Chronic Obstructive Pulmonary Disease (COPD), and, according to WHO, COPD will become the third major cause of death worldwide in 2030. Computational Vision systems are commonly used in pulmonology to address the task of image segmentation, which is essential for accurate medical diagnoses. Segmentation defines the regions of the lungs in CT images of the thorax that must be further analyzed by the system or by a specialist physician. This work proposes a novel and powerful technique named 3D Adaptive Crisp Active Contour Method (3D ACACM) for the segmentation of CT lung images. The method starts with a sphere within the lung to be segmented that is deformed by forces acting on it towards the lung borders. This process is performed iteratively in order to minimize an energy function associated with the 3D deformable model used. In the experimental assessment, the 3D ACACM is compared against three approaches commonly used in this field: the automatic 3D Region Growing, the level-set algorithm based on coherent propagation and the semi-automatic segmentation by an expert using the 3D OsiriX toolbox. When applied to 40 CT scans of the chest the 3D ACACM had an average F-measure of 99.22%, revealing its superiority and competency to segment lungs in CT images. Copyright © 2016 Elsevier B.V. All rights reserved.

Solving Upwind-Biased Discretizations: Defect-Correction Iterations

NASA Technical Reports Server (NTRS)

Diskin, Boris; Thomas, James L.

1999-01-01

This paper considers defect-correction solvers for a second order upwind-biased discretization of the 2D convection equation. The following important features are reported: (1) The asymptotic convergence rate is about 0.5 per defect-correction iteration. (2) If the operators involved in defect-correction iterations have different approximation order, then the initial convergence rates may be very slow. The number of iterations required to get into the asymptotic convergence regime might grow on fine grids as a negative power of h. In the case of a second order target operator and a first order driver operator, this number of iterations is roughly proportional to h-1/3. (3) If both the operators have the second approximation order, the defect-correction solver demonstrates the asymptotic convergence rate after three iterations at most. The same three iterations are required to converge algebraic error below the truncation error level. A novel comprehensive half-space Fourier mode analysis (which, by the way, can take into account the influence of discretized outflow boundary conditions as well) for the defect-correction method is developed. This analysis explains many phenomena observed in solving non-elliptic equations and provides a close prediction of the actual solution behavior. It predicts the convergence rate for each iteration and the asymptotic convergence rate. As a result of this analysis, a new very efficient adaptive multigrid algorithm solving the discrete problem to within a given accuracy is proposed. Numerical simulations confirm the accuracy of the analysis and the efficiency of the proposed algorithm. The results of the numerical tests are reported.

The point-spread function measure of resolution for the 3-D electrical resistivity experiment

NASA Astrophysics Data System (ADS)

Oldenborger, Greg A.; Routh, Partha S.

2009-02-01

The solution appraisal component of the inverse problem involves investigation of the relationship between our estimated model and the actual model. However, full appraisal is difficult for large 3-D problems such as electrical resistivity tomography (ERT). We tackle the appraisal problem for 3-D ERT via the point-spread functions (PSFs) of the linearized resolution matrix. The PSFs represent the impulse response of the inverse solution and quantify our parameter-specific resolving capability. We implement an iterative least-squares solution of the PSF for the ERT experiment, using on-the-fly calculation of the sensitivity via an adjoint integral equation with stored Green's functions and subgrid reduction. For a synthetic example, analysis of individual PSFs demonstrates the truly 3-D character of the resolution. The PSFs for the ERT experiment are Gaussian-like in shape, with directional asymmetry and significant off-diagonal features. Computation of attributes representative of the blurring and localization of the PSF reveal significant spatial dependence of the resolution with some correlation to the electrode infrastructure. Application to a time-lapse ground-water monitoring experiment demonstrates the utility of the PSF for assessing feature discrimination, predicting artefacts and identifying model dependence of resolution. For a judicious selection of model parameters, we analyse the PSFs and their attributes to quantify the case-specific localized resolving capability and its variability over regions of interest. We observe approximate interborehole resolving capability of less than 1-1.5m in the vertical direction and less than 1-2.5m in the horizontal direction. Resolving capability deteriorates significantly outside the electrode infrastructure.

Challenges and status of ITER conductor production

NASA Astrophysics Data System (ADS)

Devred, A.; Backbier, I.; Bessette, D.; Bevillard, G.; Gardner, M.; Jong, C.; Lillaz, F.; Mitchell, N.; Romano, G.; Vostner, A.

2014-04-01

Taking the relay of the large Hadron collider (LHC) at CERN, ITER has become the largest project in applied superconductivity. In addition to its technical complexity, ITER is also a management challenge as it relies on an unprecedented collaboration of seven partners, representing more than half of the world population, who provide 90% of the components as in-kind contributions. The ITER magnet system is one of the most sophisticated superconducting magnet systems ever designed, with an enormous stored energy of 51 GJ. It involves six of the ITER partners. The coils are wound from cable-in-conduit conductors (CICCs) made up of superconducting and copper strands assembled into a multistage cable, inserted into a conduit of butt-welded austenitic steel tubes. The conductors for the toroidal field (TF) and central solenoid (CS) coils require about 600 t of Nb3Sn strands while the poloidal field (PF) and correction coil (CC) and busbar conductors need around 275 t of Nb-Ti strands. The required amount of Nb3Sn strands far exceeds pre-existing industrial capacity and has called for a significant worldwide production scale up. The TF conductors are the first ITER components to be mass produced and are more than 50% complete. During its life time, the CS coil will have to sustain several tens of thousands of electromagnetic (EM) cycles to high current and field conditions, way beyond anything a large Nb3Sn coil has ever experienced. Following a comprehensive R&D program, a technical solution has been found for the CS conductor, which ensures stable performance versus EM and thermal cycling. Productions of PF, CC and busbar conductors are also underway. After an introduction to the ITER project and magnet system, we describe the ITER conductor procurements and the quality assurance/quality control programs that have been implemented to ensure production uniformity across numerous suppliers. Then, we provide examples of technical challenges that have been encountered and we present the status of ITER conductor production worldwide.

Electromagnetic Analysis of ITER Diagnostic Equatorial Port Plugs During Plasma Disruptions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Y. Zhai, R. Feder, A. Brooks, M. Ulrickson, C.S. Pitcher and G.D. Loesser

2012-08-27

ITER diagnostic port plugs perform many functionsincluding structural support of diagnostic systems under high electromagnetic loads while allowing for diagnostic access to the plasma. The design of diagnostic equatorial port plugs (EPP) are largely driven by electromagnetic loads and associate responses of EPP structure during plasma disruptions and VDEs. This paper summarizes results of transient electromagnetic analysis using Opera 3d in support of the design activities for ITER diagnostic EPP. A complete distribution of disruption loads on the Diagnostic First Walls (DFWs), Diagnostic Shield Modules (DSMs) and the EPP structure, as well as impact on the system design integration duemore » to electrical contact among various EPP structural components are discussed.« less

Comparison with CLPX II airborne data using DMRT model

USGS Publications Warehouse

Xu, X.; Liang, D.; Andreadis, K.M.; Tsang, L.; Josberger, E.G.

2009-01-01

In this paper, we considered a physical-based model which use numerical solution of Maxwell Equations in three-dimensional simulations and apply into Dense Media Radiative Theory (DMRT). The model is validated in two specific dataset from the second Cold Land Processes Experiment (CLPX II) at Alaska and Colorado. The data were all obtain by the Ku-band (13.95GHz) observations using airborne imaging polarimetric scatterometer (POLSCAT). Snow is a densely packed media. To take into account the collective scattering and incoherent scattering, analytical Quasi-Crystalline Approximation (QCA) and Numerical Maxwell Equation Method of 3-D simulation (NMM3D) are used to calculate the extinction coefficient and phase matrix. DMRT equations were solved by iterative solution up to 2nd order for the case of small optical thickness and full multiple scattering solution by decomposing the diffuse intensities into Fourier series was used when optical thickness exceed unity. It was shown that the model predictions agree with the field experiment not only co-polarization but also cross-polarization. For Alaska region, the input snow structure data was obtain by the in situ ground observations, while for Colorado region, we combined the VIC model to get the snow profile. ??2009 IEEE.

Experimental Mapping and Benchmarking of Magnetic Field Codes on the LHD Ion Accelerator

NASA Astrophysics Data System (ADS)

Chitarin, G.; Agostinetti, P.; Gallo, A.; Marconato, N.; Nakano, H.; Serianni, G.; Takeiri, Y.; Tsumori, K.

2011-09-01

For the validation of the numerical models used for the design of the Neutral Beam Test Facility for ITER in Padua [1], an experimental benchmark against a full-size device has been sought. The LHD BL2 injector [2] has been chosen as a first benchmark, because the BL2 Negative Ion Source and Beam Accelerator are geometrically similar to SPIDER, even though BL2 does not include current bars and ferromagnetic materials. A comprehensive 3D magnetic field model of the LHD BL2 device has been developed based on the same assumptions used for SPIDER. In parallel, a detailed experimental magnetic map of the BL2 device has been obtained using a suitably designed 3D adjustable structure for the fine positioning of the magnetic sensors inside 27 of the 770 beamlet apertures. The calculated values have been compared to the experimental data. The work has confirmed the quality of the numerical model, and has also provided useful information on the magnetic non-uniformities due to the edge effects and to the tolerance on permanent magnet remanence.

Experimental Mapping and Benchmarking of Magnetic Field Codes on the LHD Ion Accelerator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chitarin, G.; University of Padova, Dept. of Management and Engineering, strad. S. Nicola, 36100 Vicenza; Agostinetti, P.

2011-09-26

For the validation of the numerical models used for the design of the Neutral Beam Test Facility for ITER in Padua [1], an experimental benchmark against a full-size device has been sought. The LHD BL2 injector [2] has been chosen as a first benchmark, because the BL2 Negative Ion Source and Beam Accelerator are geometrically similar to SPIDER, even though BL2 does not include current bars and ferromagnetic materials. A comprehensive 3D magnetic field model of the LHD BL2 device has been developed based on the same assumptions used for SPIDER. In parallel, a detailed experimental magnetic map of themore » BL2 device has been obtained using a suitably designed 3D adjustable structure for the fine positioning of the magnetic sensors inside 27 of the 770 beamlet apertures. The calculated values have been compared to the experimental data. The work has confirmed the quality of the numerical model, and has also provided useful information on the magnetic non-uniformities due to the edge effects and to the tolerance on permanent magnet remanence.« less

A Gauss-Seidel Iteration Scheme for Reference-Free 3-D Histological Image Reconstruction

PubMed Central

Daum, Volker; Steidl, Stefan; Maier, Andreas; Köstler, Harald; Hornegger, Joachim

2015-01-01

Three-dimensional (3-D) reconstruction of histological slice sequences offers great benefits in the investigation of different morphologies. It features very high-resolution which is still unmatched by in-vivo 3-D imaging modalities, and tissue staining further enhances visibility and contrast. One important step during reconstruction is the reversal of slice deformations introduced during histological slice preparation, a process also called image unwarping. Most methods use an external reference, or rely on conservative stopping criteria during the unwarping optimization to prevent straightening of naturally curved morphology. Our approach shows that the problem of unwarping is based on the superposition of low-frequency anatomy and high-frequency errors. We present an iterative scheme that transfers the ideas of the Gauss-Seidel method to image stacks to separate the anatomy from the deformation. In particular, the scheme is universally applicable without restriction to a specific unwarping method, and uses no external reference. The deformation artifacts are effectively reduced in the resulting histology volumes, while the natural curvature of the anatomy is preserved. The validity of our method is shown on synthetic data, simulated histology data using a CT data set and real histology data. In the case of the simulated histology where the ground truth was known, the mean Target Registration Error (TRE) between the unwarped and original volume could be reduced to less than 1 pixel on average after 6 iterations of our proposed method. PMID:25312918

A predictive numerical model for potential mapping of the gas hydrate stability zone in the Gulf of Cadiz

NASA Astrophysics Data System (ADS)

Leon, R.; Somoza, L.

2009-04-01

This comunication presents a computational model for mapping the regional 3D distribution in which seafloor gas hydrates would be stable, that is carried out in a Geographical Information System (GIS) environment. The construction of the model is comprised of three primary steps, namely (1) the construction of surfaces for the various variables based on available 3D data (seafloor temperature, geothermal gradient and depth-pressure); (2) the calculation of the gas function equilibrium functions for the various hydrocarbon compositions reported from hydrate and sediment samples; and (3) the calculation of the thickness of the hydrate stability zone. The solution is based on a transcendental function, which is solved iteratively in a GIS environment. The model has been applied in the northernmost continental slope of the Gulf of Cadiz, an area where an abundant supply for hydrate formation, such as extensive hydrocarbon seeps, diapirs and fault structures, is combined with deep undercurrents and a complex seafloor morphology. In the Gulf of Cadiz, model depicts the distribution of the base of the gas hydrate stability zone for both biogenic and thermogenic gas compositions, and explains the geometry and distribution of geological structures derived from gas venting in the Tasyo Field (Gulf of Cadiz) and the generation of BSR levels on the upper continental slope.

specsim: A Fortran-77 program for conditional spectral simulation in 3D

NASA Astrophysics Data System (ADS)

Yao, Tingting

1998-12-01

A Fortran 77 program, specsim, is presented for conditional spectral simulation in 3D domains. The traditional Fourier integral method allows generating random fields with a given covariance spectrum. Conditioning to local data is achieved by an iterative identification of the conditional phase information. A flowchart of the program is given to illustrate the implementation procedures of the program. A 3D case study is presented to demonstrate application of the program. A comparison with the traditional sequential Gaussian simulation algorithm emphasizes the advantages and drawbacks of the proposed algorithm.

Modeling impurity production and transport during ELM transients in a DIII-D lower single null configuration.

NASA Astrophysics Data System (ADS)

Hogan, J.; Fenstermacher, M.; Groth, M.; West, P.; Coster, D.; Thomas, P.

2003-10-01

Better understanding of carbon production and eventual pathways is an important need for ITER. ELM events can provide a significant carbon source, and small scale experiments predict significant dependence of C production rates on incident deuterium flux and surface temperature, quantities which change significantly during an ELM event. Thus, development of better quantitative models has been hampered by lack of sufficient time resolution during ELMs. Recent progress on DIII-D has significantly improved the spectroscopic resolution [1, 2]. Measured CIII evolution during low- and high-density DIII-D LSN ELMy H-modes (type I and type I-III, respectively) has been compared with modeling using the solps5.0/Eirene99 coupled edge code, and the CASTEM- 2000 3-D, time dependent thermal analysis code. The latter provides time-resolved absolute surface temperature distributions for the cases described in [2]. Comparison with observations using the Roth et al annealing model for chemical sputtering finds qualitative agreement. However, the transition in ELM type/frequency as density increases is the most important factor, and this is an input to the calculation given the present state of first principles ELM models. [1] M Fenstermacher et al EPS2003 [2] M Groth et al J Nucl Mater 2003

Iterative metal artifact reduction: evaluation and optimization of technique.

PubMed

Subhas, Naveen; Primak, Andrew N; Obuchowski, Nancy A; Gupta, Amit; Polster, Joshua M; Krauss, Andreas; Iannotti, Joseph P

2014-12-01

Iterative metal artifact reduction (IMAR) is a sinogram inpainting technique that incorporates high-frequency data from standard weighted filtered back projection (WFBP) reconstructions to reduce metal artifact on computed tomography (CT). This study was designed to compare the image quality of IMAR and WFBP in total shoulder arthroplasties (TSA); determine the optimal amount of WFBP high-frequency data needed for IMAR; and compare image quality of the standard 3D technique with that of a faster 2D technique. Eight patients with nine TSA underwent CT with standardized parameters: 140 kVp, 300 mAs, 0.6 mm collimation and slice thickness, and B30 kernel. WFBP, three 3D IMAR algorithms with different amounts of WFBP high-frequency data (IMARlo, lowest; IMARmod, moderate; IMARhi, highest), and one 2D IMAR algorithm were reconstructed. Differences in attenuation near hardware and away from hardware were measured and compared using repeated measures ANOVA. Five readers independently graded image quality; scores were compared using Friedman's test. Attenuation differences were smaller with all 3D IMAR techniques than with WFBP (p < 0.0063). With increasing high-frequency data, the attenuation difference increased slightly (differences not statistically significant). All readers ranked IMARmod and IMARhi more favorably than WFBP (p < 0.05), with IMARmod ranked highest for most structures. The attenuation difference was slightly higher with 2D than with 3D IMAR, with no significant reader preference for 3D over 2D. IMAR significantly decreases metal artifact compared to WFBP both objectively and subjectively in TSA. The incorporation of a moderate amount of WFBP high-frequency data and use of a 2D reconstruction technique optimize image quality and allow for relatively short reconstruction times.

Full Waveform Adjoint Seismic Tomography of the Antarctic Plate

NASA Astrophysics Data System (ADS)

Lloyd, A. J.; Wiens, D.; Zhu, H.; Tromp, J.; Nyblade, A.; Anandakrishnan, S.; Aster, R. C.; Huerta, A. D.; Winberry, J. P.; Wilson, T. J.; Dalziel, I. W. D.; Hansen, S. E.; Shore, P.

2017-12-01

Recent studies investigating the response and influence of the solid Earth on the evolution of the cryosphere demonstrate the need to account for 3D rheological structure to better predict ice sheet dynamics, stability, and future sea level impact, as well as to improve glacial isostatic adjustment models and more accurately measure ice mass loss. Critical rheological properties like mantle viscosity and lithospheric thickness may be estimated from shear wave velocity models that, for Antarctica, would ideally possess regional-scale resolution extending down to at least the base of the transition zone (i.e. 670 km depth). However, current global- and continental-scale seismic velocity models are unable to obtain both the resolution and spatial coverage necessary, do not take advantage of the full set of available Antarctic data, and, in most instance, employ traditional seismic imaging techniques that utilize limited seismogram information. We utilize 3-component earthquake waveforms from almost 300 Antarctic broadband seismic stations and 26 southern mid-latitude stations from 270 earthquakes (5.5 ≤ Mw ≤ 7.0) between 2001-2003 and 2007-2016 to conduct a full-waveform adjoint inversion for Antarctica and surrounding regions of the Antarctic plate. Necessary forward and adjoint wavefield simulations are performed utilizing SPECFEM3D_GLOBE with the aid of the Texas Advanced Computing Center. We utilize phase observations from seismogram segments containing P, S, Rayleigh, and Love waves, including reflections and overtones, which are autonomously identified using FLEXWIN. The FLEXWIN analysis is carried out over a short (15-50 s) and long (initially 50-150 s) period band that target body waves, or body and surface waves, respectively. As our model is iteratively refined, the short-period corner of the long period band is gradually reduced to 25 s as the model converges over 20 linearized inversion iterations. We will briefly present this new high-resolution transverse isotropic seismic model of the Antarctic upper mantle and transition zone, which will be broadly valuable to advance cryosphere studies and improve understanding of the tectonic structure and geodynamic processes of Antarctica.

Suppression of type-I ELMs with reduced RMP coil set on DIII-D

DOE PAGES

Orlov, Dmitriy M.; Moyer, Richard A.; Evans, Todd E.; ...

2016-02-19

Recent experiments on DIII-D have demonstrated that having a toroidally-monochromatic spectral content of edge-resonant magnetic perturbations (RMPs) is not a necessary condition for suppression of Edge Localized Modes (ELMs). Robust ELM suppression has been reproducibly obtained on DIII-D during experiments in which various non-axisymmetric coil loops were turned off pseudo-randomly producing a variety of n=1, n=2, and n=3 spectral contributions. It was shown that RMP ELM suppression could be achieved with as few as 5 out of 12 internal coil loops (I-coils) on DIII-D at similar coil currents and with good plasma confinement. Linear MHD plasma response (M3DC1, IPEC, MARS)more » and vacuum (SURFMN, TRIP3D) modeling have been performed in order to understand the effects of the perturbation spectrum on the plasma response and ELM suppression. The results suggest that reduction of the dominant n=3 perturbation field is compensated by increased n=2 field in the plasma that may lead to RMP ELM suppression at lower levels of n=3 perturbative magnetic flux from the I-coils. These results provide additional confidence that ITER may be capable of RMP ELM suppression in the event of multiple internal coil failures.« less

3D printed electromagnetic transmission and electronic structures fabricated on a single platform using advanced process integration techniques

NASA Astrophysics Data System (ADS)

Deffenbaugh, Paul Issac

3D printing has garnered immense attention from many fields including in-office rapid prototyping of mechanical parts, outer-space satellite replication, garage functional firearm manufacture, and NASA rocket engine component fabrication. 3D printing allows increased design flexibility in the fabrication of electronics, microwave circuits and wireless antennas and has reached a level of maturity which allows functional parts to be printed. Much more work is necessary in order to perfect the processes of 3D printed electronics especially in the area of automation. Chapter 1 shows several finished prototypes of 3D printed electronics as well as newly developed techniques in fabrication. Little is known about the RF and microwave properties and applications of the standard materials which have been developed for 3D printing. Measurement of a wide variety of materials over a broad spectrum of frequencies up to 10 GHz using a variety of well-established measurement methods is performed throughout chapter 2. Several types of high frequency RF transmission lines are fabricated and valuable model-matched data is gathered and provided in chapter 3 for future designers' use. Of particular note is a fully 3D printed stripline which was automatically fabricated in one process on one machine. Some core advantages of 3D printing RF/microwave components include rapid manufacturing of complex, dimensionally sensitive circuits (such as antennas and filters which are often iteratively tuned) and the ability to create new devices that cannot be made using standard fabrication techniques. Chapter 4 describes an exemplary fully 3D printed curved inverted-F antenna.

Axial-Stereo 3-D Optical Metrology for Inner Profile of Pipes Using a Scanning Laser Endoscope

NASA Astrophysics Data System (ADS)

Gong, Yuanzheng; Johnston, Richard S.; Melville, C. David; Seibel, Eric J.

2015-07-01

As the rapid progress in the development of optoelectronic components and computational power, 3-D optical metrology becomes more and more popular in manufacturing and quality control due to its flexibility and high speed. However, most of the optical metrology methods are limited to external surfaces. This article proposed a new approach to measure tiny internal 3-D surfaces with a scanning fiber endoscope and axial-stereo vision algorithm. A dense, accurate point cloud of internally machined threads was generated to compare with its corresponding X-ray 3-D data as ground truth, and the quantification was analyzed by Iterative Closest Points algorithm.

Development of iterative techniques for the solution of unsteady compressible viscous flows

NASA Technical Reports Server (NTRS)

Sankar, Lakshmi; Hixon, Duane

1993-01-01

The work done under this project was documented in detail as the Ph. D. dissertation of Dr. Duane Hixon. The objectives of the research project were evaluation of the generalized minimum residual method (GMRES) as a tool for accelerating 2-D and 3-D unsteady flows and evaluation of the suitability of the GMRES algorithm for unsteady flows, computed on parallel computer architectures.

Source apportionment for fine particulate matter in a Chinese city using an improved gas-constrained method and comparison with multiple receptor models.

PubMed

Shi, Guoliang; Liu, Jiayuan; Wang, Haiting; Tian, Yingze; Wen, Jie; Shi, Xurong; Feng, Yinchang; Ivey, Cesunica E; Russell, Armistead G

2018-02-01

PM 2.5 is one of the most studied atmospheric pollutants due to its adverse impacts on human health and welfare and the environment. An improved model (the chemical mass balance gas constraint-Iteration: CMBGC-Iteration) is proposed and applied to identify source categories and estimate source contributions of PM 2.5. The CMBGC-Iteration model uses the ratio of gases to PM as constraints and considers the uncertainties of source profiles and receptor datasets, which is crucial information for source apportionment. To apply this model, samples of PM 2.5 were collected at Tianjin, a megacity in northern China. The ambient PM 2.5 dataset, source information, and gas-to-particle ratios (such as SO 2 /PM 2.5 , CO/PM 2.5 , and NOx/PM 2.5 ratios) were introduced into the CMBGC-Iteration to identify the potential sources and their contributions. Six source categories were identified by this model and the order based on their contributions to PM 2.5 was as follows: secondary sources (30%), crustal dust (25%), vehicle exhaust (16%), coal combustion (13%), SOC (7.6%), and cement dust (0.40%). In addition, the same dataset was also calculated by other receptor models (CMB, CMB-Iteration, CMB-GC, PMF, WALSPMF, and NCAPCA), and the results obtained were compared. Ensemble-average source impacts were calculated based on the seven source apportionment results: contributions of secondary sources (28%), crustal dust (20%), coal combustion (18%), vehicle exhaust (17%), SOC (11%), and cement dust (1.3%). The similar results of CMBGC-Iteration and ensemble method indicated that CMBGC-Iteration can produce relatively appropriate results. Copyright © 2017 Elsevier Ltd. All rights reserved.

Structure of the Sumatra-Andaman subduction zone

NASA Astrophysics Data System (ADS)

Pesicek, Jeremy Dale

We have conducted studies of the Sumatra-Andaman subduction zone using newly available teleseismic data resulting from the aftershock sequences of the 2004, 2005, and 2007 great earthquakes that occurred offshore of the island of Sumatra. In order to better exploit the new data, existing methodologies have been adapted and advanced in several ways to obtain results at a level of precision not previously possible from teleseismic data. Seismic tomography studies of the mantle were conducted using an improved iterative technique that accounts for fine-scale three-dimensional (3-D) velocity variations inside the study region and coarser global velocity variations outside the region. More precise earthquake locations were determined using a double-difference technique that has been extended to teleseismic distances using spherical ray tracing through the nested 3-D regional-global velocity models. Earthquake relocation was included in the iterative tomography scheme and was found to significantly enhance the recovery of slab velocity anomalies. Finally, because crustal structure is poorly constrained by the teleseismic data, 3-D density modeling of the crust was conducted using newly available satellite gravity data and a spherical prism gravity algorithm. The results of these studies better constrain the structure of the Sumatra-Andaman subduction zone, including the geometry of the mantle slab, position of the megathrust, and structural features of the downgoing plate. Tomography results reveal continuous upper mantle slab anomalies with significant variations in dip throughout the region. Broad curvature of the fast anomalies beneath northern Sumatra, similar to curvature of the trench and volcanic arc at the surface, is interpreted as folding of the upper mantle slab. Earthquake relocations show systematic shifts of the hypocenters to the northeast and to shallower depths, each with average changes of 5 km. Reduced scatter in the relocations better constrain the megathrust plate boundary and the regions of coseismic slip during the 2004 and 2005 great earthquakes. In addition, the relocations reveal discrete seismic features on the downgoing plate not previously visible in teleseismic catalogs. The new velocity model and earthquake locations provide the most comprehensive view of the deep structure of the Sumatra-Andaman subduction zone yet available.

TOMO3D: 3-D joint refraction and reflection traveltime tomography parallel code for active-source seismic data—synthetic test

NASA Astrophysics Data System (ADS)

Meléndez, A.; Korenaga, J.; Sallarès, V.; Miniussi, A.; Ranero, C. R.

2015-10-01

We present a new 3-D traveltime tomography code (TOMO3D) for the modelling of active-source seismic data that uses the arrival times of both refracted and reflected seismic phases to derive the velocity distribution and the geometry of reflecting boundaries in the subsurface. This code is based on its popular 2-D version TOMO2D from which it inherited the methods to solve the forward and inverse problems. The traveltime calculations are done using a hybrid ray-tracing technique combining the graph and bending methods. The LSQR algorithm is used to perform the iterative regularized inversion to improve the initial velocity and depth models. In order to cope with an increased computational demand due to the incorporation of the third dimension, the forward problem solver, which takes most of the run time (˜90 per cent in the test presented here), has been parallelized with a combination of multi-processing and message passing interface standards. This parallelization distributes the ray-tracing and traveltime calculations among available computational resources. The code's performance is illustrated with a realistic synthetic example, including a checkerboard anomaly and two reflectors, which simulates the geometry of a subduction zone. The code is designed to invert for a single reflector at a time. A data-driven layer-stripping strategy is proposed for cases involving multiple reflectors, and it is tested for the successive inversion of the two reflectors. Layers are bound by consecutive reflectors, and an initial velocity model for each inversion step incorporates the results from previous steps. This strategy poses simpler inversion problems at each step, allowing the recovery of strong velocity discontinuities that would otherwise be smoothened.

A Finite-Orbit-Width Fokker-Planck solver for modeling of energetic particle interactions with waves, with application to Helicons in ITER

NASA Astrophysics Data System (ADS)

Petrov, Yuri V.; Harvey, R. W.

2017-10-01

The bounce-average (BA) finite-difference Fokker-Planck (FP) code CQL3D [1,2] now includes the essential physics to describe the RF heating of Finite-Orbit-Width (FOW) ions in tokamaks. The FP equation is reformulated in terms of Constants-Of-Motion coordinates, which we select to be particle speed, pitch angle, and major radius on the equatorial plane thus obtaining the distribution function directly at this location. Full-orbit, low collisionality neoclassical radial transport emerges from averaging the local friction and diffusion coefficients along guiding center orbits. Similarly, the BA of local quasilinear RF diffusion terms gives rise to additional radial transport. The local RF electric field components needed for the BA operator are usually obtained by a ray-tracing code, such as GENRAY, or in conjunction with full-wave codes. As a new, practical application, the CQL3D-FOW version is used for simulation of alpha-particle heating by high-harmonic waves in ITER. Coupling of high harmonic or helicon fast waves power to electrons is a promising current drive (CD) scenario for high beta plasmas. However, the efficiency of current drive can be diminished by parasitic channeling of RF power into fast ions, such as alphas, through finite Larmor-radius effects. We investigate possibilities to reduce the fast ion heating in CD scenarios.

Operating Characteristics in DIII-D ELM-Suppressed RMP H-modes with ITER Similar Shapes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Evans, T E; Fenstermacher, M E; Jakubowski, M

2008-10-13

Fast energy transients, incident on the DIII-D divertors due to Type-I edge localized modes (ELMs), are eliminated using small dc currents in a simple set of non-axisymmetric coils that produce edge resonant magnetic perturbations (RMP). In ITER similar shaped (ISS) plasmas, with electron pedestal collisionalities matched to those expected in ITER a sharp resonant window in the safety factor at the 95 percent normalized poloidal flux surface is observed for ELM suppression at q{sub 95}=3.57 with a minimum width {delta}q{sub 95} of {+-}0.05. The size of this resonant window has been increased by a factor of 4 in ISS plasmasmore » by increasing the magnitude of the current in an n=3 coil set along with the current in a separate n=1 coil set. The resonant ELM-suppression window is highly reproducible for a given plasma shape, coil configuration and coil current but can vary with other operating conditions such as {beta}{sub N}. Isolated resonant windows have also been found at other q95 values when using different RMP coil configurations. For example, when the I-coil is operated in an n=3 up-down asymmetric configuration rather than an up-down symmetric configuration a resonant window is found near q{sub 95}=7.4. A Fourier analysis of the applied vacuum magnetic field demonstrates a statistical correlation between the Chirikov island overlap parameter and ELM suppression. These results have been used as a guide for RMP coil design studies in various ITER operating scenarios.« less

Optimizing convergence rates of alternating minimization reconstruction algorithms for real-time explosive detection applications

NASA Astrophysics Data System (ADS)

Bosch, Carl; Degirmenci, Soysal; Barlow, Jason; Mesika, Assaf; Politte, David G.; O'Sullivan, Joseph A.

2016-05-01

X-ray computed tomography reconstruction for medical, security and industrial applications has evolved through 40 years of experience with rotating gantry scanners using analytic reconstruction techniques such as filtered back projection (FBP). In parallel, research into statistical iterative reconstruction algorithms has evolved to apply to sparse view scanners in nuclear medicine, low data rate scanners in Positron Emission Tomography (PET) [5, 7, 10] and more recently to reduce exposure to ionizing radiation in conventional X-ray CT scanners. Multiple approaches to statistical iterative reconstruction have been developed based primarily on variations of expectation maximization (EM) algorithms. The primary benefit of EM algorithms is the guarantee of convergence that is maintained when iterative corrections are made within the limits of convergent algorithms. The primary disadvantage, however is that strict adherence to correction limits of convergent algorithms extends the number of iterations and ultimate timeline to complete a 3D volumetric reconstruction. Researchers have studied methods to accelerate convergence through more aggressive corrections [1], ordered subsets [1, 3, 4, 9] and spatially variant image updates. In this paper we describe the development of an AM reconstruction algorithm with accelerated convergence for use in a real-time explosive detection application for aviation security. By judiciously applying multiple acceleration techniques and advanced GPU processing architectures, we are able to perform 3D reconstruction of scanned passenger baggage at a rate of 75 slices per second. Analysis of the results on stream of commerce passenger bags demonstrates accelerated convergence by factors of 8 to 15, when comparing images from accelerated and strictly convergent algorithms.

Simulation of tokamak armour erosion and plasma contamination at intense transient heat fluxes in ITER

NASA Astrophysics Data System (ADS)

Landman, I. S.; Bazylev, B. N.; Garkusha, I. E.; Loarte, A.; Pestchanyi, S. E.; Safronov, V. M.

2005-03-01

For ITER, the potential material damage of plasma facing tungsten-, CFC-, or beryllium components during transient processes such as ELMs or mitigated disruptions are simulated numerically using the MHD code FOREV-2D and the melt motion code MEMOS-1.5D for a heat deposition in the range of 0.5-3 MJ/m 2 on the time scale of 0.1-1 ms. Such loads can cause significant evaporation at the target surface and a contamination of the SOL by the ions of evaporated material. Results are presented on carbon plasma dynamics in toroidal geometry and on radiation fluxes from the SOL carbon ions obtained with FOREV-2D. The validation of MEMOS-1.5D against the plasma gun tokamak simulators MK-200UG and QSPA-Kh50, based on the tungsten melting threshold, is described. Simulations with MEMOS-1.5D for a beryllium first wall that provide important details about the melt motion dynamics and typical features of the damage are reported.

Projection-based stabilization of interface Lagrange multipliers in immersogeometric fluid-thin structure interaction analysis, with application to heart valve modeling.

PubMed

Kamensky, David; Evans, John A; Hsu, Ming-Chen; Bazilevs, Yuri

2017-11-01

This paper discusses a method of stabilizing Lagrange multiplier fields used to couple thin immersed shell structures and surrounding fluids. The method retains essential conservation properties by stabilizing only the portion of the constraint orthogonal to a coarse multiplier space. This stabilization can easily be applied within iterative methods or semi-implicit time integrators that avoid directly solving a saddle point problem for the Lagrange multiplier field. Heart valve simulations demonstrate applicability of the proposed method to 3D unsteady simulations. An appendix sketches the relation between the proposed method and a high-order-accurate approach for simpler model problems.

Towards the Experimental Assessment of the DQE in SPECT Scanners

NASA Astrophysics Data System (ADS)

Fountos, G. P.; Michail, C. M.

2017-11-01

The purpose of this work was to introduce the Detective Quantum Efficiency (DQE) in single photon emission computed tomography (SPECT) systems using a flood source. A Tc-99m-based flood source (Eγ = 140 keV) consisting of a radiopharmaceutical solution of dithiothreitol (DTT, 10-3 M)/Tc-99m(III)-DMSA, 40 mCi/40 ml bound to the grains of an Agfa MammoRay HDR Medical X-ray film) was prepared in laboratory. The source was placed between two PMMA blocks and images were obtained by using the brain tomographic acquisition protocol (DatScan-brain). The Modulation Transfer Function (MTF) was evaluated using the Iterative 2D algorithm. All imaging experiments were performed in a Siemens e-Cam gamma camera. The Normalized Noise Power spectra (NNPS) were obtained from the sagittal views of the source. The higher MTF values were obtained for the Flash Iterative 2D with 24 iterations and 20 subsets. The noise levels of the SPECT reconstructed images, in terms of the NNPS, were found to increase as the number of iterations increase. The behavior of the DQE was influenced by both MTF and NNPS. As the number of iterations was increased, higher MTF values were obtained, however with a parallel, increase of magnitude in image noise, as depicted from the NNPS results. DQE values, which were influenced by both MTF and NNPS, were found higher when the number of iterations results in resolution saturation. The method presented here is novel and easy to implement, requiring materials commonly found in clinical practice and can be useful in the quality control of SPECT scanners.

Validation of 3D documentation of palatal soft tissue shape, color, and irregularity with intraoral scanning.

PubMed

Deferm, Julie T; Schreurs, Ruud; Baan, Frank; Bruggink, Robin; Merkx, Matthijs A W; Xi, Tong; Bergé, Stefaan J; Maal, Thomas J J

2018-04-01

The purpose of this study was to assess the feasibility of 3D intraoral scanning for documentation of palatal soft tissue by evaluating the accuracy of shape, color, and curvature. Intraoral scans of ten participants' upper dentition and palate were acquired with the TRIOS® 3D intraoral scanner by two observers. Conventional impressions were taken and digitized as a gold standard. The resulting surface models were aligned using an Iterative Closest Point approach. The absolute distance measurements between the intraoral models and the digitized impression were used to quantify the trueness and precision of intraoral scanning. The mean color of the palatal soft tissue was extracted in HSV (hue, saturation, value) format to establish the color precision. Finally, the mean curvature of the surface models was calculated and used for surface irregularity. Mean average distance error between the conventional impression models and the intraoral models was 0.02 ± 0.07 mm (p = 0.30). Mean interobserver color difference was - 0.08 ± 1.49° (p = 0.864), 0.28 ± 0.78% (p = 0.286), and 0.30 ± 1.14% (p = 0.426) for respectively hue, saturation, and value. The interobserver differences for overall and maximum surface irregularity were 0.01 ± 0.03 and 0.00 ± 0.05 mm. This study supports the hypothesis that the intraoral scan can perform a 3D documentation of palatal soft tissue in terms of shape, color, and curvature. An intraoral scanner can be an objective tool, adjunctive to the clinical examination of the palatal tissue.

Towards Single-Step Biofabrication of Organs on a Chip via 3D Printing.

PubMed

Knowlton, Stephanie; Yenilmez, Bekir; Tasoglu, Savas

2016-09-01

Organ-on-a-chip engineering employs microfabrication of living tissues within microscale fluid channels to create constructs that closely mimic human organs. With the advent of 3D printing, we predict that single-step fabrication of these devices will enable rapid design and cost-effective iterations in the development stage, facilitating rapid innovation in this field. Copyright © 2016 Elsevier Ltd. All rights reserved.

Choice of regularization in adjoint tomography based on two-dimensional synthetic tests

NASA Astrophysics Data System (ADS)

Valentová, Lubica; Gallovič, František; Růžek, Bohuslav; de la Puente, Josep; Moczo, Peter

2015-08-01

We present synthetic tests of 2-D adjoint tomography of surface wave traveltimes obtained by the ambient noise cross-correlation analysis across the Czech Republic. The data coverage may be considered perfect for tomography due to the density of the station distribution. Nevertheless, artefacts in the inferred velocity models arising from the data noise may be still observed when weak regularization (Gaussian smoothing of the misfit gradient) or too many iterations are considered. To examine the effect of the regularization and iteration number on the performance of the tomography in more detail we performed extensive synthetic tests. Instead of the typically used (although criticized) checkerboard test, we propose to carry out the tests with two different target models-simple smooth and complex realistic models. The first test reveals the sensitivity of the result on the data noise, while the second helps to analyse the resolving power of the data set. For various noise and Gaussian smoothing levels, we analysed the convergence towards (or divergence from) the target model with increasing number of iterations. Based on the tests we identified the optimal regularization, which we then employed in the inversion of 16 and 20 s Love-wave group traveltimes.

Wave optics theory and 3-D deconvolution for the light field microscope

PubMed Central

Broxton, Michael; Grosenick, Logan; Yang, Samuel; Cohen, Noy; Andalman, Aaron; Deisseroth, Karl; Levoy, Marc

2013-01-01

Light field microscopy is a new technique for high-speed volumetric imaging of weakly scattering or fluorescent specimens. It employs an array of microlenses to trade off spatial resolution against angular resolution, thereby allowing a 4-D light field to be captured using a single photographic exposure without the need for scanning. The recorded light field can then be used to computationally reconstruct a full volume. In this paper, we present an optical model for light field microscopy based on wave optics, instead of previously reported ray optics models. We also present a 3-D deconvolution method for light field microscopy that is able to reconstruct volumes at higher spatial resolution, and with better optical sectioning, than previously reported. To accomplish this, we take advantage of the dense spatio-angular sampling provided by a microlens array at axial positions away from the native object plane. This dense sampling permits us to decode aliasing present in the light field to reconstruct high-frequency information. We formulate our method as an inverse problem for reconstructing the 3-D volume, which we solve using a GPU-accelerated iterative algorithm. Theoretical limits on the depth-dependent lateral resolution of the reconstructed volumes are derived. We show that these limits are in good agreement with experimental results on a standard USAF 1951 resolution target. Finally, we present 3-D reconstructions of pollen grains that demonstrate the improvements in fidelity made possible by our method. PMID:24150383

Computations of Wall Distances Based on Differential Equations

NASA Technical Reports Server (NTRS)

Tucker, Paul G.; Rumsey, Chris L.; Spalart, Philippe R.; Bartels, Robert E.; Biedron, Robert T.

2004-01-01

The use of differential equations such as Eikonal, Hamilton-Jacobi and Poisson for the economical calculation of the nearest wall distance d, which is needed by some turbulence models, is explored. Modifications that could palliate some turbulence-modeling anomalies are also discussed. Economy is of especial value for deforming/adaptive grid problems. For these, ideally, d is repeatedly computed. It is shown that the Eikonal and Hamilton-Jacobi equations can be easy to implement when written in implicit (or iterated) advection and advection-diffusion equation analogous forms, respectively. These, like the Poisson Laplacian term, are commonly occurring in CFD solvers, allowing the re-use of efficient algorithms and code components. The use of the NASA CFL3D CFD program to solve the implicit Eikonal and Hamilton-Jacobi equations is explored. The re-formulated d equations are easy to implement, and are found to have robust convergence. For accurate Eikonal solutions, upwind metric differences are required. The Poisson approach is also found effective, and easiest to implement. Modified distances are not found to affect global outputs such as lift and drag significantly, at least in common situations such as airfoil flows.