Turbulence Modeling for the Simulation of Transition in Wall Shear Flows

NASA Technical Reports Server (NTRS)

Crawford, Michael E.

2007-01-01

Our research involves study of the behavior of k-epsilon turbulence models for simulation of bypass-level transition over flat surfaces and turbine blades. One facet of the research has been to assess the performance of a multitude of k-epsilon models in what we call "natural transition", i.e. no modifications to the k-e models. The study has been to ascertain what features in the dynamics of the model affect the start and end of the transition. Some of the findings are in keeping with those reported by others (e.g. ERCOFTAC). A second facet of the research has been to develop and benchmark a new multi-time scale k-epsilon model (MTS) for use in simulating bypass-level transition. This model has certain features of the published MTS models by Hanjalic, Launder, and Schiestel, and by Kim and his coworkers. The major new feature of our MTS model is that it can be used to compute wall shear flows as a low-turbulence Reynolds number type of model, i.e. there is no required partition with patching a one-equation k model in the near-wall region to a two-equation k-epsilon model in the outer part of the flow. Our MTS model has been studied extensively to understand its dynamics in predicting the onset of transition and the end-stage of the transition. Results to date indicate that it far superior to the standard unmodified k-epsilon models. The effects of protracted pressure gradients on the model behavior are currently being investigated.

Numerical simulation of two-dimensional combustion process in a spark ignition engine with a prechamber using k-. epsilon. turbulence model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ryu, H.; Asanuma, T.

1989-01-01

Two-dimensional combustion processes in a spark ignition engine with and without an unscavenged horizontal prechamber are calculated numerically using a {kappa}-{epsilon} turbulence model, a flame kernel ignition model and an irreversible reaction model to obtain a better understanding of the spatial and temporal distributions of flow and combustion. The simulation results are compared with the measured results under the same operating conditions of experiments, that is, the minimum spark advance for best torque (MBT), volumetric efficiency of 80 +- 2%, air-fuel ratio of 15 and engine speed of 1000 rpm, with various torch nozzle areas and an open chamber. Consequently,more » the flow and combustion characteristics calculated for the S.I. engine with and without prechamber are discussed to examine the effect of torch jet on the velocity vectors, contour maps of turbulence and gas temperature.« less

Implementation of a kappa-epsilon turbulence model to RPLUS3D code

NASA Technical Reports Server (NTRS)

Chitsomboon, Tawit

1992-01-01

The RPLUS3D code has been developed at the NASA Lewis Research Center to support the National Aerospace Plane (NASP) project. The code has the ability to solve three dimensional flowfields with finite rate combustion of hydrogen and air. The combustion process of the hydrogen-air system are simulated by an 18 reaction path, 8 species chemical kinetic mechanism. The code uses a Lower-Upper (LU) decomposition numerical algorithm as its basis, making it a very efficient and robust code. Except for the Jacobian matrix for the implicit chemistry source terms, there is no inversion of a matrix even though a fully implicit numerical algorithm is used. A k-epsilon turbulence model has recently been incorporated into the code. Initial validations have been conducted for a flow over a flat plate. Results of the validation studies are shown. Some difficulties in implementing the k-epsilon equations to the code are also discussed.

Implementation of a kappa-epsilon turbulence model to RPLUS3D code

NASA Astrophysics Data System (ADS)

Chitsomboon, Tawit

1992-02-01

The RPLUS3D code has been developed at the NASA Lewis Research Center to support the National Aerospace Plane (NASP) project. The code has the ability to solve three dimensional flowfields with finite rate combustion of hydrogen and air. The combustion process of the hydrogen-air system are simulated by an 18 reaction path, 8 species chemical kinetic mechanism. The code uses a Lower-Upper (LU) decomposition numerical algorithm as its basis, making it a very efficient and robust code. Except for the Jacobian matrix for the implicit chemistry source terms, there is no inversion of a matrix even though a fully implicit numerical algorithm is used. A k-epsilon turbulence model has recently been incorporated into the code. Initial validations have been conducted for a flow over a flat plate. Results of the validation studies are shown. Some difficulties in implementing the k-epsilon equations to the code are also discussed.

The fundamental parameters of the chromospherically active K2 dwarf Epsilon Eridani

NASA Technical Reports Server (NTRS)

Drake, Jeremy J.; Smith, Geoffrey

1993-01-01

A silicon array detector was used to record regions exhibiting calcium and iron lines in the spectrum of the chromospherically active K2 dwarf Epsilon Eri at a resolution of 120,000 and with an SNR of not less than 200. The effective temperature, surface gravity, logarithmic iron and calcium abundances, and microturbulence are determined. Three high-excitation lines of Fe I were found to yield anomalously low iron abundances; it is postulated that the origin of the anomaly lies in the nonthermal excitation of the upper photosphere caused by chromospheric emission. It is shown that Epsilon Eri is in an evolutionary stage consistent with an M/solar mass of 0.85 theoretical zero-age main-sequence model. It is suggested that Epsilon Eri is almost certainly a young star of slightly less than one solar mass.

Effects of climate and lifeform on dry matter yield (epsilon) from simulations using BIOME BGC. [ecosystem process model for vegetation biomass production using daily absorbed photosynthetically active radiation

NASA Technical Reports Server (NTRS)

Hunt, E. R., Jr.; Running, Steven W.

1992-01-01

An ecosystem process simulation model, BIOME-BGC, is used in a sensitivity analysis to determine the factors that may cause the dry matter yield (epsilon) and annual net primary production to vary for different ecosystems. At continental scales, epsilon is strongly correlated with annual precipitation. At a single location, year-to-year variation in net primary production (NPP) and epsilon is correlated with either annual precipitation or minimum air temperatures. Simulations indicate that forests have lower epsilon than grasslands. The most sensitive parameter affecting forest epsilon is the total amount of living woody biomass, which affects NPP by increasing carbon loss by maintenance respiration. A global map of woody biomass should significantly improve estimates of global NPP using remote sensing.

Turbulence modeling in simulation of gas-turbine flow and heat transfer.

PubMed

Brereton, G; Shih, T I

2001-05-01

The popular k-epsilon type two-equation turbulence models, which are calibrated by experimental data from simple shear flows, are analyzed for their ability to predict flows involving shear and an extra strain--flow with shear and rotation and flow with shear and streamline curvature. The analysis is based on comparisons between model predictions and those from measurements and large-eddy simulations of homogenous flows involving shear and an extra strain, either from rotation or from streamline curvature. Parameters are identified, which show the conditions under which performance of k-epsilon type models can be expected to be poor.

Phosphorylation of Tat-interactive protein 60 kDa by protein kinase C epsilon is important for its subcellular localisation.

PubMed

Sapountzi, Vasileia; Logan, Ian R; Nelson, Glyn; Cook, Susan; Robson, Craig N

2008-01-01

Tat-interactive protein 60 kDa is a nuclear acetyltransferase that both coactivates and corepresses transcription factors and has a definitive function in the DNA damage response. Here, we provide evidence that Tat-interactive protein 60 kDa is phosphorylated by protein kinase C epsilon. In vitro, protein kinase C epsilon phosphorylates Tat-interactive protein 60 kDa on at least two sites within the acetyltransferase domain. In whole cells, activation of protein kinase C increases the levels of phosphorylated Tat-interactive protein 60 kDa and the interaction of Tat-interactive protein 60 kDa with protein kinase C epsilon. A phosphomimetic mutant Tat-interactive protein 60 kDa has distinct subcellular localisation compared to the wild-type protein in whole cells. Taken together, these findings suggest that the protein kinase C epsilon phosphorylation sites on Tat-interactive protein 60 kDa are important for its subcellular localisation. Regulation of the subcellular localisation of Tat-interactive protein 60 kDa via phosphorylation provides a novel means of controlling Tat-interactive protein 60 kDa function.

Interpretation of f({epsilon}) measurements by T. Kimura, K. Akatsuka and K. Ohe

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia, M.

1996-11-26

This note describes my analysis of the measurement of the electron energy distribution function in a DC glow discharge reported by T. Kimura, K. Akatsuka, and K. Ohe, in `Experimental and theoretical investigations of DC glow discharges in argon-nitrogen mixtures,`J. Phys. D: Appl. Phys. 27 (1994) 1664-1671. T. Kimura of the Department of Systems Engineering at the Nagoya Institute of Technology sent me this paper in 1994, as well as `Electron Energy Distribution Function in Neon-Nitrogen Mixture Positive Column,` T. Kimura, and K. Ohe, Jpn. J. Appl. Phys. Vol. 3 1, Part 1, No. 12A, December 1992, pp. 4051- 4052.more » I base my analysis on the data for a pure N{sub 2} discharge at p=1 torr in the 1994 paper. Figures 2 and 3 in that paper show a discrepancy between f({epsilon}) as measured by Langmuir probing and f({epsilon}) as calculated from E/N based on the measured axial field. Kimura et. al. explain their observation of hotter than expected electrons on superelastic collisions with vibrationally excited nitrogen. My fundamental point is that the radial field generated by ambipolar diffusion significantly augments E/N above the contribution from the axial field in this experiment, and creates a higher than expected radially averaged electron energy.« less

Wall functions for the kappa-epsilon turbulence model in generalized nonorthogonal curvilinear coordinates

NASA Technical Reports Server (NTRS)

Sondak, D. L.; Pletcher, R. H.; Vandalsem, W. R.

1992-01-01

A k-epsilon turbulence model suitable for compressible flow, including the new wall function formulation, has been incorporated into an existing compressible Reynolds-averaged Navier-Stokes code, F3D. The low Reynolds number k-epsilon model of Chien (1982) was added for comparison with the present method. A number of features were added to the F3D code including improved far-field boundary conditions and viscous terms in the streamwise direction. A series of computations of increasing complexity was run to test the effectiveness of the new formulation. Flow over a flat plate was computed by using both orthogonal and nonorthogonal grids, and the friction coefficients and velocity profiles compared with a semi-empirical equation. Flow over a body of revolution at zero angle of attack was then computed to test the method's ability to handle flow over a curved surface. Friction coefficients and velocity profiles were compared to test data. All models gave good results on a relatively fine grid, but only the wall function formulation was effective with coarser grids. Finally, in order to demonstrate the method's ability to handle complex flow fields, separated flow over a prolate spheroid at angle of attack was computed, and results were compared to test data. The results were also compared to a k-epsilon model by Kim and Patel (1991), in which one equation model patched in at the wall was employed. Both models gave reasonable solutions, but improvement is required for accurate prediction of friction coefficients in the separated regions.

Numerical simulations of the NREL S826 airfoil

NASA Astrophysics Data System (ADS)

Sagmo, KF; Bartl, J.; Sætran, L.

2016-09-01

2D and 3D steady state simulations were done using the commercial CFD package Star-CCM+ with three different RANS turbulence models. Lift and drag coefficients were simulated at different angles of attack for the NREL S826 airfoil at a Reynolds number of 100 000, and compared to experimental data obtained at NTNU and at DTU. The Spalart-Allmaras and the Realizable k-epsilon turbulence models reproduced experimental results for lift well in the 2D simulations. The 3D simulations with the Realizable two-layer k-epsilon model predicted essentially the same lift coefficients as the 2D Spalart-Allmaras simulations. A comparison between 2D and 3D simulations with the Realizable k-epsilon model showed a significantly lower prediction in drag by the 2D simulations. From the conducted 3D simulations surface pressure predictions along the wing span were presented, along with volumetric renderings of vorticity. Both showed a high degree of span wise flow variation when going into the stall region, and predicted a flow field resembling that of stall cells for angles of attack above peak lift.

Turbulence modeling for Francis turbine water passages simulation

NASA Astrophysics Data System (ADS)

Maruzewski, P.; Hayashi, H.; Munch, C.; Yamaishi, K.; Hashii, T.; Mombelli, H. P.; Sugow, Y.; Avellan, F.

2010-08-01

The applications of Computational Fluid Dynamics, CFD, to hydraulic machines life require the ability to handle turbulent flows and to take into account the effects of turbulence on the mean flow. Nowadays, Direct Numerical Simulation, DNS, is still not a good candidate for hydraulic machines simulations due to an expensive computational time consuming. Large Eddy Simulation, LES, even, is of the same category of DNS, could be an alternative whereby only the small scale turbulent fluctuations are modeled and the larger scale fluctuations are computed directly. Nevertheless, the Reynolds-Averaged Navier-Stokes, RANS, model have become the widespread standard base for numerous hydraulic machine design procedures. However, for many applications involving wall-bounded flows and attached boundary layers, various hybrid combinations of LES and RANS are being considered, such as Detached Eddy Simulation, DES, whereby the RANS approximation is kept in the regions where the boundary layers are attached to the solid walls. Furthermore, the accuracy of CFD simulations is highly dependent on the grid quality, in terms of grid uniformity in complex configurations. Moreover any successful structured and unstructured CFD codes have to offer a wide range to the variety of classic RANS model to hybrid complex model. The aim of this study is to compare the behavior of turbulent simulations for both structured and unstructured grids topology with two different CFD codes which used the same Francis turbine. Hence, the study is intended to outline the encountered discrepancy for predicting the wake of turbine blades by using either the standard k-epsilon model, or the standard k-epsilon model or the SST shear stress model in a steady CFD simulation. Finally, comparisons are made with experimental data from the EPFL Laboratory for Hydraulic Machines reduced scale model measurements.

Modelling Epsilon Aurigae without solid particles

NASA Technical Reports Server (NTRS)

Cheng, A. Y. S.; Woolf, N. J.

1985-01-01

Three components can be expected to contribute to the emission of epsilon Aurigae. There is a primary F star. There is an opaque disk which occults it, and there is a gas stream which is observed to produce absorption lines. Evidence that the disk is not responsible for the gas stream lines comes both from the radial velocities, which are too small, and from the IR energy distribution out of eclipse, which shows free-free emission that would produce inadequate optical depth in electron scattering. The color temperature of the IR excess can give misleading indications of low temperature material. Free-free emission at 10,000 K between 10 and 20 microns has a color temperature of 350 K. Attempts to mold the system are discussed.

Ultraviolet observations of cool stars. IV - Intensities of Lyman-alpha and Mg II in epsilon Pegasi and epsilon Eridani, and line width-luminosity correlations

NASA Technical Reports Server (NTRS)

Mcclintock, W.; Linsky, J. L.; Henry, R. C.; Moos, H. W.

1975-01-01

A spectrometer on the Copernicus satellite has been used to confirm the existence of a line width-luminosity relation for the Ly-alpha and Mg II 2800-A chromospheric emission lines in K-type stars by observation of a K2 dwarf (epsilon Eri) and a K2 supergiant (epsilon Peg). Combined with previously reported observations of lines in three K giants (alpha Boo, alpha Tau, and beta Gem), the data are consistent with an identical dependence of line width on absolute visual magnitude for the Ca II K, Ly-alpha, and Mg II 2795-A lines. Surface fluxes of Ly-alpha, Mg II 2800-A, and O V 1218-A (upper limit) for epsilon Eri, and of Mg II 2800-A for epsilon Peg are also compared with values reported previously for the three giant stars.

epsilon-Hexachlorocyclohexane (epsilon-HC)

Integrated Risk Information System (IRIS)

epsilon - Hexachlorocyclohexane ( epsilon - HC ) ; CASRN 6108 - 10 - 7 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard

Modeling of lipase catalyzed ring-opening polymerization of epsilon-caprolactone.

PubMed

Sivalingam, G; Madras, Giridhar

2004-01-01

Enzymatic ring-opening polymerization of epsilon-caprolactone by various lipases was investigated in toluene at various temperatures. The determination of molecular weight and structural identification was carried out with gel permeation chromatography and proton NMR, respectively. Among the various lipases employed, an immobilized lipase from Candida antartica B (Novozym 435) showed the highest catalytic activity. The polymerization of epsilon-caprolactone by Novozym 435 showed an optimal temperature of 65 degrees C and an optimum toluene content of 50/50 v/v of toluene and epsilon-caprolactone. As lipases can degrade polyesters, a maximum in the molecular weight with time was obtained due to the competition of ring opening polymerization and degradation by specific chain end scission. The optimum temperature, toluene content, and the variation of molecular weight with time are consistent with earlier observations. A comprehensive model based on continuous distribution kinetics was developed to model these phenomena. The model accounts for simultaneous polymerization, degradation and enzyme deactivation and provides a technique to determine the rate coefficients for these processes. The dependence of these rate coefficients with temperature and monomer concentration is also discussed.

Low Reynolds number kappa-epsilon and empirical transition models for oscillatory pipe flow and heat transfer. M.S. Thesis

NASA Technical Reports Server (NTRS)

Bauer, Christopher

1993-01-01

Stirling engine heat exchangers are shell-and-tube type with oscillatory flow (zero-mean velocity) for the inner fluid. This heat transfer process involves laminar-transition turbulent flow motions under oscillatory flow conditions. A low Reynolds number kappa-epsilon model, (Lam-Bremhorst form), was utilized in the present study to simulate fluid flow and heat transfer in a circular tube. An empirical transition model was used to activate the low Reynolds number k-e model at the appropriate time within the cycle for a given axial location within the tube. The computational results were compared with experimental flow and heat transfer data for: (1) velocity profiles, (2) kinetic energy of turbulence, (3) skin friction factor, (4) temperature profiles, and (5) wall heat flux. The experimental data were obtained for flow in a tube (38 mm diameter and 60 diameter long), with the maximum Reynolds number based on velocity being Re(sub max) = 11840, a dimensionless frequency (Valensi number) of Va = 80.2, at three axial locations X/D = 16, 30 and 44. The agreement between the computations and the experiment is excellent in the laminar portion of the cycle and good in the turbulent portion. Moreover, the location of transition was predicted accurately. The Low Reynolds Number kappa-epsilon model, together with an empirical transition model, is proposed herein to generate the wall heat flux values at different operating parameters than the experimental conditions. Those computational data can be used for testing the much simpler and less accurate one dimensional models utilized in 1-D Stirling Engine design codes.

Studies of turbulence models in a computational fluid dynamics model of a blood pump.

PubMed

Song, Xinwei; Wood, Houston G; Day, Steven W; Olsen, Don B

2003-10-01

Computational fluid dynamics (CFD) is used widely in design of rotary blood pumps. The choice of turbulence model is not obvious and plays an important role on the accuracy of CFD predictions. TASCflow (ANSYS Inc., Canonsburg, PA, U.S.A.) has been used to perform CFD simulations of blood flow in a centrifugal left ventricular assist device; a k-epsilon model with near-wall functions was used in the initial numerical calculation. To improve the simulation, local grids with special distribution to ensure the k-omega model were used. Iterations have been performed to optimize the grid distribution and turbulence modeling and to predict flow performance more accurately comparing to experimental data. A comparison of k-omega model and experimental measurements of the flow field obtained by particle image velocimetry shows better agreement than k-epsilon model does, especially in the near-wall regions.

Modeling of near-wall turbulence

NASA Technical Reports Server (NTRS)

Shih, T. H.; Mansour, N. N.

1990-01-01

An improved k-epsilon model and a second order closure model is presented for low Reynolds number turbulence near a wall. For the k-epsilon model, a modified form of the eddy viscosity having correct asymptotic near wall behavior is suggested, and a model for the pressure diffusion term in the turbulent kinetic energy equation is proposed. For the second order closure model, the existing models are modified for the Reynolds stress equations to have proper near wall behavior. A dissipation rate equation for the turbulent kinetic energy is also reformulated. The proposed models satisfy realizability and will not produce unphysical behavior. Fully developed channel flows are used for model testing. The calculations are compared with direct numerical simulations. It is shown that the present models, both the k-epsilon model and the second order closure model, perform well in predicting the behavior of the near wall turbulence. Significant improvements over previous models are obtained.

Stellar model chromospheres. IV - The formation of the H-epsilon feature in the sun /G2 V/ and Arcturus /K2 III/

NASA Technical Reports Server (NTRS)

Ayres, T. R.; Linsky, J. L.

1975-01-01

The formation of the Balmer-series member H-epsilon in the near-red wing of the Ca II H line is discussed for two cases: the sun (H-epsilon absorption profile) and Arcturus (H-epsilon emission profile). It is shown that although the H-epsilon source functions in both stars are dominated by the Balmer-continuum radiation field through photoionizations, the line-formation problems in the two stars are quantitatively different, owing to a substantial difference in the relative importance of the stellar chromosphere temperature inversion as compared with the stellar photosphere.

Computational Fluid Dynamic simulations of pipe elbow flow.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Homicz, Gregory Francis

2004-08-01

One problem facing today's nuclear power industry is flow-accelerated corrosion and erosion in pipe elbows. The Korean Atomic Energy Research Institute (KAERI) is performing experiments in their Flow-Accelerated Corrosion (FAC) test loop to better characterize these phenomena, and develop advanced sensor technologies for the condition monitoring of critical elbows on a continuous basis. In parallel with these experiments, Sandia National Laboratories is performing Computational Fluid Dynamic (CFD) simulations of the flow in one elbow of the FAC test loop. The simulations are being performed using the FLUENT commercial software developed and marketed by Fluent, Inc. The model geometry and meshmore » were created using the GAMBIT software, also from Fluent, Inc. This report documents the results of the simulations that have been made to date; baseline results employing the RNG k-e turbulence model are presented. The predicted value for the diametrical pressure coefficient is in reasonably good agreement with published correlations. Plots of the velocities, pressure field, wall shear stress, and turbulent kinetic energy adjacent to the wall are shown within the elbow section. Somewhat to our surprise, these indicate that the maximum values of both wall shear stress and turbulent kinetic energy occur near the elbow entrance, on the inner radius of the bend. Additional simulations were performed for the same conditions, but with the RNG k-e model replaced by either the standard k-{var_epsilon}, or the realizable k-{var_epsilon} turbulence model. The predictions using the standard k-{var_epsilon} model are quite similar to those obtained in the baseline simulation. However, with the realizable k-{var_epsilon} model, more significant differences are evident. The maximums in both wall shear stress and turbulent kinetic energy now appear on the outer radius, near the elbow exit, and are {approx}11% and 14% greater, respectively, than those predicted in the baseline

Low Reynolds number two-equation modeling of turbulent flows

NASA Technical Reports Server (NTRS)

Michelassi, V.; Shih, T.-H.

1991-01-01

A k-epsilon model that accounts for viscous and wall effects is presented. The proposed formulation does not contain the local wall distance thereby making very simple the application to complex geometries. The formulation is based on an existing k-epsilon model that proved to fit very well with the results of direct numerical simulation. The new form is compared with nine different two-equation models and with direct numerical simulation for a fully developed channel flow at Re = 3300. The simple flow configuration allows a comparison free from numerical inaccuracies. The computed results prove that few of the considered forms exhibit a satisfactory agreement with the channel flow data. The model shows an improvement with respect to the existing formulations.

Molecular dynamic simulations on the structures and properties of epsilon-CL-20(0 0 1)/F 2314 PBX.

PubMed

Xu, Xiaojuan; Xiao, Jijun; Huang, Hui; Li, Jinshan; Xiao, Heming

2010-03-15

Molecular dynamical (MD) simulations with the COMPASS force field were employed to investigate the influences of temperature (T), the concentration of F(2314) binder (W%), and crystal defects on the mechanical properties, binding energy (E(bind)), and detonation properties of epsilon-CL-20(001)/F(2314) PBX (polymer bonded explosives). T was found to have some influences on the mechanical properties, and the PBX at 298 K was considered with better mechanical properties. By radial distribution function g(r) analysis the three types of hydrogen bonds, H...O, H...F, and H...Cl were predicted as the main interaction formats between F(2314) and epsilon-CL-20, and the strength of these interactions changed with temperature changing. The isotropic properties of the PBX increased with W% increasing, but each modulus and E(bind) did not monotonously vary with W% increasing. The detonation properties of the PBX decreased with the increasing W%, and the PBX with 4.69% F(2314) was regarded with good detonation properties. The existence of crystal defects (vacancy or adulteration) might increase the elasticity but destabilize the system to some extent, and the mechanical properties of PBX were chiefly determined by the main body explosive. The above information was thought guidable for practical formulation design of PBX. (c) 2009 Elsevier B.V. All rights reserved.

Development of a two-equation turbulence model for hypersonic flows. Volume 1; Evaluation of a low Reynolds number correction to the Kappa - epsilon two equation compressible turbulence model

NASA Technical Reports Server (NTRS)

Knight, Doyle D.; Becht, Robert J.

1995-01-01

The objective of the current research is the development of an improved k-epsilon two-equation compressible turbulence model for turbulent boundary layer flows experiencing strong viscous-inviscid interactions. The development of an improved model is important in the design of hypersonic vehicles such as the National Aerospace Plane (NASP) and the High Speed Civil Transport (HSCT). Improvements have been made to the low Reynolds number functions in the eddy viscosity and dissipation of solenoidal dissipation of the k-epsilon turbulence mode. These corrections offer easily applicable modifications that may be utilized for more complex geometries. The low Reynolds number corrections are functions of the turbulent Reynolds number and are therefore independent of the coordinate system. The proposed model offers advantages over some current models which are based upon the physical distance from the wall, that modify the constants of the standard model, or that make more corrections than are necessary to the governing equations. The code has been developed to solve the Favre averaged, boundary layer equations for mass, momentum, energy, turbulence kinetic energy, and dissipation of solenoidal dissipation using Keller's box scheme and the Newton spatial marching method. The code has been validated by removing the turbulent terms and comparing the solution with the Blasius solution, and by comparing the turbulent solution with an existing k-epsilon model code using wall function boundary conditions. Excellent agreement is seen between the computed solution and the Blasius solution, and between the two codes. The model has been tested for both subsonic and supersonic flat-plate turbulent boundary layer flow by comparing the computed skin friction with the Van Driest II theory and the experimental data of Weighardt; by comparing the transformed velocity profile with the data of Weighardt, and the Law of the Wall and the Law of the Wake; and by comparing the computed results

Large Eddy Simulation and Reynolds-Averaged Navier-Stokes modeling of flow in a realistic pharyngeal airway model: an investigation of obstructive sleep apnea.

PubMed

Mihaescu, Mihai; Murugappan, Shanmugam; Kalra, Maninder; Khosla, Sid; Gutmark, Ephraim

2008-07-19

Computational fluid dynamics techniques employing primarily steady Reynolds-Averaged Navier-Stokes (RANS) methodology have been recently used to characterize the transitional/turbulent flow field in human airways. The use of RANS implies that flow phenomena are averaged over time, the flow dynamics not being captured. Further, RANS uses two-equation turbulence models that are not adequate for predicting anisotropic flows, flows with high streamline curvature, or flows where separation occurs. A more accurate approach for such flow situations that occur in the human airway is Large Eddy Simulation (LES). The paper considers flow modeling in a pharyngeal airway model reconstructed from cross-sectional magnetic resonance scans of a patient with obstructive sleep apnea. The airway model is characterized by a maximum narrowing at the site of retropalatal pharynx. Two flow-modeling strategies are employed: steady RANS and the LES approach. In the RANS modeling framework both k-epsilon and k-omega turbulence models are used. The paper discusses the differences between the airflow characteristics obtained from the RANS and LES calculations. The largest discrepancies were found in the axial velocity distributions downstream of the minimum cross-sectional area. This region is characterized by flow separation and large radial velocity gradients across the developed shear layers. The largest difference in static pressure distributions on the airway walls was found between the LES and the k-epsilon data at the site of maximum narrowing in the retropalatal pharynx.

Classical closure theory and Lam's interpretation of epsilon-RNG

NASA Technical Reports Server (NTRS)

Zhou, YE

1995-01-01

Lam's phenomenological epsilon-renormalization group (RNG) model is quite different from the other members of that group. It does not make use of the correspondence principle and the epsilon-expansion procedure. We demonstrate that Lam's epsilon-RNG model is essentially the physical space version of the classical closure theory in spectral space and consider the corresponding treatment of the eddy viscosity and energy backscatter.

Magnetism-Structure Correlations during the epsilon ->tau Transformation in Rapidly-Solidified MnAl Nanostructured Alloys

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jimenez-Villacorta, F; Marion, JL; Oldham, JT

2014-01-21

Magnetic and structural aspects of the annealing-induced transformation of rapidly-solidified Mn55Al45 ribbons from the as-quenched metastable antiferromagnetic (AF) epsilon-phase to the target ferromagnetic (FM) L1(0) tau-phase are investigated. The as-solidified material exhibits a majority hexagonal epsilon-MnAl phase revealing a large exchange bias shift below a magnetic blocking temperature T-B similar to 95 K (H-ex similar to 13 kOe at 10 K), ascribed to the presence of compositional fluctuations in this antiferromagnetic phase. Heat treatment at a relatively low annealing temperature T-anneal approximate to 568 K (295 degrees C) promotes the nucleation of the metastable L1(0) tau-MnAl phase at the expensemore » of the parent epsilon-phase, donating an increasingly hard ferromagnetic character. The onset of the epsilon ->tau transformation occurs at a temperature that is similar to 100 K lower than that reported in the literature, highlighting the benefits of applying rapid solidification for synthesis of the rapidly-solidified parent alloy.« less

Effects of Artificial Viscosity on the Accuracy of High-reynolds-number Kappa-epsilon Turbulence Model

NASA Technical Reports Server (NTRS)

Chitsomboon, Tawit

1994-01-01

Wall functions, as used in the typical high Reynolds number k-epsilon turbulence model, can be implemented in various ways. A least disruptive method (to the flow solver) is to directly solve for the flow variables at the grid point next to the wall while prescribing the values of k and epsilon. For the centrally-differenced finite-difference scheme employing artificial viscocity (AV) as a stabilizing mechanism, this methodology proved to be totally useless. This is because the AV gives rise to a large error at the wall due to too steep a velocity gradient resulting from the use of a coarse grid as required by the wall function methodology. This error can be eliminated simply by extrapolating velocities at the wall, instead of using the physical values of the no-slip velocities (i.e. the zero value). The applicability of the technique used in this paper is demonstrated by solving a flow over a flat plate and comparing the results with those of experiments. It was also observed that AV gives rise to a velocity overshoot (about 1 percent) near the edge of the boundary layer. This small velocity error, however, can yield as much as 10 percent error in the momentum thickness. A method which integrates the boundary layer up to only the edge of the boundary (instead of infinity) was proposed and demonstrated to give better results than the standard method.

A critical evaluation of various turbulence models as applied to internal fluid flows

NASA Technical Reports Server (NTRS)

Nallasamy, M.

1985-01-01

Models employed in the computation of turbulent flows are described and their application to internal flows is evaluated by examining the predictions of various turbulence models in selected flow configurations. The main conclusions are: (1) the k-epsilon model is used in a majority of all the two-dimensional flow calculations reported in the literature; (2) modified forms of the k-epsilon model improve the performance for flows with streamline curvature and heat transfer; (3) for flows with swirl, the k-epsilon model performs rather poorly; the algebraic stress model performs better in this case; and (4) for flows with regions of secondary flow (noncircular duct flows), the algebraic stress model performs fairly well for fully developed flow, for developing flow, the algebraic stress model performance is not good; a Reynolds stress model should be used. False diffusion and inlet boundary conditions are discussed. Countergradient transport and its implications in turbulence modeling is mentioned. Two examples of recirculating flow predictions obtained using PHOENICS code are discussed. The vortex method, large eddy simulation (modeling of subgrid scale Reynolds stresses), and direct simulation, are considered. Some recommendations for improving the model performance are made. The need for detailed experimental data in flows with strong curvature is emphasized.

Computation of flows in a turn-around duct and a turbine cascade using advanced turbulence models

NASA Technical Reports Server (NTRS)

Lakshminarayana, B.; Luo, J.

1993-01-01

Numerical investigation has been carried out to evaluate the capability of the Algebraic Reynolds Stress Model (ARSM) and the Nonlinear Stress Model (NLSM) to predict strongly curved turbulent flow in a turn-around duct (TAD). The ARSM includes the near-wall damping term of pressure-strain correlation phi(sub ij,w), which enables accurate prediction of individual Reynolds stress components in wall flows. The TAD mean flow quantities are reasonably well predicted by various turbulence models. The ARSM yields better predictions for both the mean flow and the turbulence quantities than the NLSM and the k-epsilon (k = turbulent kinetic energy, epsilon = dissipation rate of k) model. The NLSM also shows slight improvement over the k-epsilon model. However, all the models fail to capture the recovery of the flow from strong curvature effects. The formulation for phi(sub ij,w) appears to be incorrect near the concave surface. The hybrid k-epsilon/ARSM, Chien's k-epsilon model, and Coakley's q-omega (q = the square root of k, omega = epsilon/k) model have also been employed to compute the aerodynamics and heat transfer of a transonic turbine cascade. The surface pressure distributions and the wake profiles are predicted well by all the models. The k-epsilon model and the k-epsilon/ARSM model provide better predictions of heat transfer than the q-omega model. The k-epsilon/ARSM solutions show significant differences in the predicted skin friction coefficients, heat transfer rates and the cascade performance parameters, as compared to the k-epsilon model. The k-epsilon/ARSM model appears to capture, qualitatively, the anisotropy associated with by-pass transition.

Near-wall modelling of compressible turbulent flows

NASA Technical Reports Server (NTRS)

So, Ronald M. C.

1990-01-01

Work was carried out to extend the near-wall models formulated for the incompressible Reynolds stress equations to compressible flows. The idea of splitting the compressible dissipation function into a solenoidal part that is not sensitive to changes of compressibility indicators and a compressible part that is directly affected by these changes is adopted. This means that all models involving the dissipation rate could be expressed in terms of the solenoidal dissipation rate and an equation governing its transport could be formulated to close the set of compressible Reynolds stress equations. The near-wall modelling of the dissipation rate equation is investigated and its behavior near a wall is studied in detail using k-epsilon closure. It is found that all existing modelled equations give the wrong behavior for the dissipation rate near a wall. Improvements are suggested and the resultant behavior is found to be in good agreement with near-wall data. Furthermore, the present modified k-epsilon closure is used too calculate a flat plate boundary layer and the results are compared with four existing k-epsilon closures. These comparisons show that all closures tested give essentially the same flow properties, except in a region very close to the wall. In this region, the present k-epsilon closure calculations are in better agreement with measurements and direct simulation data; in particular, the behavior of the dissipation rate.

Clostridium perfringens epsilon toxin: a malevolent molecule for animals and man?

PubMed

Stiles, Bradley G; Barth, Gillian; Barth, Holger; Popoff, Michel R

2013-11-12

Clostridium perfringens is a prolific, toxin-producing anaerobe causing multiple diseases in humans and animals. One of these toxins is epsilon, a 33 kDa protein produced by Clostridium perfringens (types B and D) that induces fatal enteric disease of goats, sheep and cattle. Epsilon toxin (Etx) belongs to the aerolysin-like toxin family. It contains three distinct domains, is proteolytically-activated and forms oligomeric pores on cell surfaces via a lipid raft-associated protein(s). Vaccination controls Etx-induced disease in the field. However, therapeutic measures are currently lacking. This review initially introduces C. perfringens toxins, subsequently focusing upon the Etx and its biochemistry, disease characteristics in various animals that include laboratory models (in vitro and in vivo), and finally control mechanisms (vaccines and therapeutics).

Clostridium perfringens Epsilon Toxin: A Malevolent Molecule for Animals and Man?

PubMed Central

Stiles, Bradley G.; Barth, Gillian; Barth, Holger; Popoff, Michel R.

2013-01-01

Clostridium perfringens is a prolific, toxin-producing anaerobe causing multiple diseases in humans and animals. One of these toxins is epsilon, a 33 kDa protein produced by Clostridium perfringens (types B and D) that induces fatal enteric disease of goats, sheep and cattle. Epsilon toxin (Etx) belongs to the aerolysin-like toxin family. It contains three distinct domains, is proteolytically-activated and forms oligomeric pores on cell surfaces via a lipid raft-associated protein(s). Vaccination controls Etx-induced disease in the field. However, therapeutic measures are currently lacking. This review initially introduces C. perfringens toxins, subsequently focusing upon the Etx and its biochemistry, disease characteristics in various animals that include laboratory models (in vitro and in vivo), and finally control mechanisms (vaccines and therapeutics). PMID:24284826

A Monte Carlo Study on the Performance of a Corrected Formula for Epsilon Approximate Suggested by Lecoutre.

ERIC Educational Resources Information Center

Chen, Ru San; Dunlap, William P.

1994-01-01

The present simulation study confirms that the corrected epsilon approximate test of B. Lecoutre yields a less biased estimation of population epsilon and reduces Type I error rates when compared to the epsilon approximate test of H. Huynh and L. S. Feldt. (SLD)

Validation of numerical models for flow simulation in labyrinth seals

NASA Astrophysics Data System (ADS)

Frączek, D.; Wróblewski, W.

2016-10-01

CFD results were compared with the results of experiments for the flow through the labyrinth seal. RANS turbulence models (k-epsilon, k-omega, SST and SST-SAS) were selected for the study. Steady and transient results were analyzed. ANSYS CFX was used for numerical computation. The analysis included flow through sealing section with the honeycomb land. Leakage flows and velocity profiles in the seal were compared. In addition to the comparison of computational models, the divergence of modeling and experimental results has been determined. Tips for modeling these problems were formulated.

Computation of confined coflow jets with three turbulence models

NASA Technical Reports Server (NTRS)

Zhu, J.; Shih, T. H.

1993-01-01

A numerical study of confined jets in a cylindrical duct is carried out to examine the performance of two recently proposed turbulence models: an RNG-based K-epsilon model and a realizable Reynolds stress algebraic equation model. The former is of the same form as the standard K-epsilon model but has different model coefficients. The latter uses an explicit quadratic stress-strain relationship to model the turbulent stresses and is capable of ensuring the positivity of each turbulent normal stress. The flow considered involves recirculation with unfixed separation and reattachment points and severe adverse pressure gradients, thereby providing a valuable test of the predictive capability of the models for complex flows. Calculations are performed with a finite-volume procedure. Numerical credibility of the solutions is ensured by using second-order accurate differencing schemes and sufficiently fine grids. Calculations with the standard K-epsilon model are also made for comparison. Detailed comparisons with experiments show that the realizable Reynolds stress algebraic equation model consistently works better than does the standard K-epsilon model in capturing the essential flow features, while the RNG-based K-epsilon model does not seem to give improvements over the standard K-epsilon model under the flow conditions considered.

Measurement of the Solar Absorptance and Thermal Emittance of Lunar Simulants

NASA Technical Reports Server (NTRS)

Gaier, James R.; Street, Kenneth W.; Gustafson, Robert J.

2010-01-01

The first comparative study of the reflectance spectra of lunar simulants is presented. All of the simulants except one had a wavelength-dependent reflectivity, rho(lambda), near 0.10 over the wavelength range of 8 to 25 microns, so they are highly emitting at room temperature and lower. The 300 K emittance, epsilon, of all the lunar simulants except one ranged from 0.884 to 0.906. The 300 K epsilon of JSC Mars-1 simulant was 0.927. There was considerably more variation in the lunar simulant reflectance in the solar spectral range (250 to 2500 nm) than in the thermal infrared. Larger particle size simulants reflected much less than those with smaller particle size. As expected, the lunar highlands simulants were more reflective in this wavelength range than the lunar mare simulants. The alpha of the simulants ranged from 0.413 to 0.817 for those with smaller particles and 0.669 to 0.906 for large particles. Although spectral differences were observed, the total integrated alpha for the simulants appears to be similar to that of lunar soils (0.65 to 0.88). These data are now available to be used in modeling the effects of dust on thermal control surfaces.

Retrospective cost adaptive Reynolds-averaged Navier-Stokes k-ω model for data-driven unsteady turbulent simulations

NASA Astrophysics Data System (ADS)

Li, Zhiyong; Hoagg, Jesse B.; Martin, Alexandre; Bailey, Sean C. C.

2018-03-01

This paper presents a data-driven computational model for simulating unsteady turbulent flows, where sparse measurement data is available. The model uses the retrospective cost adaptation (RCA) algorithm to automatically adjust the closure coefficients of the Reynolds-averaged Navier-Stokes (RANS) k- ω turbulence equations to improve agreement between the simulated flow and the measurements. The RCA-RANS k- ω model is verified for steady flow using a pipe-flow test case and for unsteady flow using a surface-mounted-cube test case. Measurements used for adaptation of the verification cases are obtained from baseline simulations with known closure coefficients. These verification test cases demonstrate that the RCA-RANS k- ω model can successfully adapt the closure coefficients to improve agreement between the simulated flow field and a set of sparse flow-field measurements. Furthermore, the RCA-RANS k- ω model improves agreement between the simulated flow and the baseline flow at locations at which measurements do not exist. The RCA-RANS k- ω model is also validated with experimental data from 2 test cases: steady pipe flow, and unsteady flow past a square cylinder. In both test cases, the adaptation improves agreement with experimental data in comparison to the results from a non-adaptive RANS k- ω model that uses the standard values of the k- ω closure coefficients. For the steady pipe flow, adaptation is driven by mean stream-wise velocity measurements at 24 locations along the pipe radius. The RCA-RANS k- ω model reduces the average velocity error at these locations by over 35%. For the unsteady flow over a square cylinder, adaptation is driven by time-varying surface pressure measurements at 2 locations on the square cylinder. The RCA-RANS k- ω model reduces the average surface-pressure error at these locations by 88.8%.

Computational fluid dynamics analysis of cyclist aerodynamics: performance of different turbulence-modelling and boundary-layer modelling approaches.

PubMed

Defraeye, Thijs; Blocken, Bert; Koninckx, Erwin; Hespel, Peter; Carmeliet, Jan

2010-08-26

This study aims at assessing the accuracy of computational fluid dynamics (CFD) for applications in sports aerodynamics, for example for drag predictions of swimmers, cyclists or skiers, by evaluating the applied numerical modelling techniques by means of detailed validation experiments. In this study, a wind-tunnel experiment on a scale model of a cyclist (scale 1:2) is presented. Apart from three-component forces and moments, also high-resolution surface pressure measurements on the scale model's surface, i.e. at 115 locations, are performed to provide detailed information on the flow field. These data are used to compare the performance of different turbulence-modelling techniques, such as steady Reynolds-averaged Navier-Stokes (RANS), with several k-epsilon and k-omega turbulence models, and unsteady large-eddy simulation (LES), and also boundary-layer modelling techniques, namely wall functions and low-Reynolds number modelling (LRNM). The commercial CFD code Fluent 6.3 is used for the simulations. The RANS shear-stress transport (SST) k-omega model shows the best overall performance, followed by the more computationally expensive LES. Furthermore, LRNM is clearly preferred over wall functions to model the boundary layer. This study showed that there are more accurate alternatives for evaluating flow around bluff bodies with CFD than the standard k-epsilon model combined with wall functions, which is often used in CFD studies in sports. 2010 Elsevier Ltd. All rights reserved.

Simulations of the vortex in the Dellenback abrupt expansion, resembling a hydro turbine draft tube operating at part-load

NASA Astrophysics Data System (ADS)

Nilsson, H.

2012-11-01

This work presents an OpenFOAM case-study, based on the experimental studies of the swirling flow in the abrupt expansion by Dellenback et al.[1]. The case yields similar flow conditions as those of a helical vortex rope in a hydro turbine draft tube working at part-load. The case-study is set up similar to the ERCOFTAC Conical Diffuser and Centrifugal Pump OpenFOAM case-studies [2,3], making all the files available and the results fully reproducable using OpenSource software. The mesh generation is done using m4 scripting and the OpenFOAM built-in blockMesh mesh generator. The swirling inlet boundary condition is specified as an axi-symmetric profile. The outlet boundary condition uses the zeroGradient condition for all variables except for the pressure, which uses the fixed mean value boundary condition. The wall static pressure is probed at a number of locations during the simulations, and post-processing of the time-averaged solution is done using the OpenFOAM sample utility. Gnuplot scripts are provided for plotting the results. The computational results are compared to one of the operating conditions studied by Dellenback, and measurements for all the experimentally studied operating conditions are available in the case-study. Results from five cases are here presented, based on the kEpsilon model, the kOmegaSST model, and a filtered version of the same kOmegaSST model, named kOmegaSSTF [4,5]. Two different inlet boundary conditions are evaluated. It is shown that kEpsilon and kOmegaSST give steady solutions, while kOmegaSSTF gives a highly unsteady solution. The time-averaged solution of the kOmegaSSTF model is much more accurate than the other models. The kEpsilon and kOmegaSST models are thus unable to accurately model the effect of the large-scale unsteadiness, while kOmegaSSTF resolves those scales and models only the smaller scales. The use of two different boundary conditions shows that the boundary conditions are more important than the choice between

Comparison of numerical predictions of horizontal nonisothermal jet in a room with three turbulence models -- {kappa}-{epsilon} EVM, ASM, and DSM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murakami, Shuzo; Kato, Shinsuke; Ooka, Ryozo

1994-12-31

A three-dimensional nonisothermal jet in a room is analyzed numerically by the standard {kappa}-{epsilon} eddy viscosity model (EVM) and two second-moment closure models-the algebraic stress model (ASM) (Hossain and Rodi 1982) and the differential stress model (DSM) (Launder et al. 1975). Numerical results given by these turbulence models are compared with experimental results, and the prediction errors existing in the results are examined, thus clarifying the relative structural differences between the {kappa}-{epsilon} EVM and the second-moment closure models. Since the second moment closure models clearly manifest the turbulence structures of the flow field, they are more accurate than the {kappa}-{epsilon}more » EVM. A small difference between the DSM and the ASM -- one based on an inappropriate approximation of the convection and diffusion terms in the Reynolds stress transport equations in the ASM -- is also observed.« less

Epsilon Eridani Inner Asteroid Belt

NASA Image and Video Library

2017-09-14

SCI2017_0004: Artist's illustration of the Epsilon Eridani system showing Epsilon Eridani b, right foreground, a Jupiter-mass planet orbiting its parent star at the outside edge of an asteroid belt. In the background can be seen another narrow asteroid or comet belt plus an outermost belt similar in size to our solar system's Kuiper Belt. The similarity of the structure of the Epsilon Eridani system to our solar system is remarkable, although Epsilon Eridani is much younger than our sun. SOFIA observations confirmed the existence of the asteroid belt adjacent to the orbit of the Jovian planet. Credit: NASA/SOFIA/Lynette Cook

An Attempt to Derive the epsilon Equation from a Two-Point Closure

NASA Technical Reports Server (NTRS)

Canuto, V. M.; Cheng, Y.; Howard, A. M.

2010-01-01

The goal of this paper is to derive the equation for the turbulence dissipation rate epsilon for a shear-driven flow. In 1961, Davydov used a one-point closure model to derive the epsilon equation from first principles but the final result contained undetermined terms and thus lacked predictive power. Both in 1987 and in 2001, attempts were made to derive the epsilon equation from first principles using a two-point closure, but their methods relied on a phenomenological assumption. The standard practice has thus been to employ a heuristic form of the equation that contains three empirical ingredients: two constants, c(sub 1 epsilon), and c(sub 2 epsilon), and a diffusion term D(sub epsilon) In this work, a two-point closure is employed, yielding the following results: 1) the empirical constants get replaced by c(sub 1), c(sub 2), which are now functions of Kappa and epsilon; 2) c(sub 1) and c(sub 2) are not independent because a general relation between the two that are valid for any Kappa and epsilon are derived; 3) c(sub 1), c(sub 2) become constant with values close to the empirical values c(sub 1 epsilon), c(sub epsilon 2), (i.e., homogenous flows); and 4) the empirical form of the diffusion term D(sub epsilon) is no longer needed because it gets substituted by the Kappa-epsilon dependence of c(sub 1), c(sub 2), which plays the role of the diffusion, together with the diffusion of the turbulent kinetic energy D(sub Kappa), which now enters the new equation (i.e., inhomogeneous flows). Thus, the three empirical ingredients c(sub 1 epsilon), c(sub epsilon 2), D (sub epsilon)are replaced by a single function c(sub 1)(Kappa, epsilon ) or c(sub 2)(Kappa, epsilon ), plus a D(sub Kappa)term. Three tests of the new equation for epsilon are presented: one concerning channel flow and two concerning the shear-driven planetary boundary layer (PBL).

Improved two-equation k-omega turbulence models for aerodynamic flows

NASA Technical Reports Server (NTRS)

Menter, Florian R.

1992-01-01

Two new versions of the k-omega two-equation turbulence model will be presented. The new Baseline (BSL) model is designed to give results similar to those of the original k-omega model of Wilcox, but without its strong dependency on arbitrary freestream values. The BSL model is identical to the Wilcox model in the inner 50 percent of the boundary-layer but changes gradually to the high Reynolds number Jones-Launder k-epsilon model (in a k-omega formulation) towards the boundary-layer edge. The new model is also virtually identical to the Jones-Lauder model for free shear layers. The second version of the model is called Shear-Stress Transport (SST) model. It is based on the BSL model, but has the additional ability to account for the transport of the principal shear stress in adverse pressure gradient boundary-layers. The model is based on Bradshaw's assumption that the principal shear stress is proportional to the turbulent kinetic energy, which is introduced into the definition of the eddy-viscosity. Both models are tested for a large number of different flowfields. The results of the BSL model are similar to those of the original k-omega model, but without the undesirable freestream dependency. The predictions of the SST model are also independent of the freestream values and show excellent agreement with experimental data for adverse pressure gradient boundary-layer flows.

PAB3D: Its History in the Use of Turbulence Models in the Simulation of Jet and Nozzle Flows

NASA Technical Reports Server (NTRS)

Abdol-Hamid, Khaled S.; Pao, S. Paul; Hunter, Craig A.; Deere, Karen A.; Massey, Steven J.; Elmiligui, Alaa

2006-01-01

This is a review paper for PAB3D s history in the implementation of turbulence models for simulating jet and nozzle flows. We describe different turbulence models used in the simulation of subsonic and supersonic jet and nozzle flows. The time-averaged simulations use modified linear or nonlinear two-equation models to account for supersonic flow as well as high temperature mixing. Two multiscale-type turbulence models are used for unsteady flow simulations. These models require modifications to the Reynolds Averaged Navier-Stokes (RANS) equations. The first scheme is a hybrid RANS/LES model utilizing the two-equation (k-epsilon) model with a RANS/LES transition function, dependent on grid spacing and the computed turbulence length scale. The second scheme is a modified version of the partially averaged Navier-Stokes (PANS) formulation. All of these models are implemented in the three-dimensional Navier-Stokes code PAB3D. This paper discusses computational methods, code implementation, computed results for a wide range of nozzle configurations at various operating conditions, and comparisons with available experimental data. Very good agreement is shown between the numerical solutions and available experimental data over a wide range of operating conditions.

Conformal Field Theories in the Epsilon and 1/N Expansions

NASA Astrophysics Data System (ADS)

Fei, Lin

In this thesis, we study various conformal field theories in two different approximation schemes - the epsilon-expansion in dimensional continuation, and the large N expansion. We first propose a cubic theory in d = 6 - epsilon as the UV completion of the quartic scalar O(N) theory in d > 4. We study this theory to three-loop order and show that various operator dimensions are consistent with large-N results. This theory possesses an IR stable fixed point at real couplings for N > 1038, suggesting the existence of a perturbatively unitary interacting O(N) symmetric CFT in d = 5. Extending this model to Sp(N) symmetric theories, we find an interacting non-unitary CFT in d = 5. For the special case of Sp(2), the IR fixed point possesses an enhanced symmetry given by the supergroup OSp(1|2). We also observe that various operator dimensions of the Sp(2) theory match those from the 0-state Potts model. We provide a graph theoretic proof showing that the zero, two, and three-point functions in the Sp(2) model and the 0-state Potts model indeed match to all orders in perturbation theory, strongly suggesting their equivalence. We then study two fermionic theories in d = 2 + epsilon - the Gross-Neveu model and the Nambu-Jona-Lasinio model, together with their UV completions in d = 4 - epsilon given by the Gross-Neveu-Yukawa and the Nambu-Jona-Lasinio-Yukawa theories. We compute their sphere free energy and certain operator dimensions, passing all checks against large- N results. We use two sided Pade approximations with our epsilon-expansion results to obtain estimates of various quantities in the physical dimension d = 3. Finally, we provide evidence that the N=1 Gross-Neveu-Yukawa model which contains a 2-component Majorana fermion, and the N= 2 Nambu-Jona-Lasinion-Yukawa model which contains a 2-component Dirac fermion, both have emergent supersymmetry.

MESA models of the evolutionary state of the interacting binary epsilon Aurigae

NASA Astrophysics Data System (ADS)

Gibson, Justus L.; Stencel, Robert E.

2018-06-01

Using MESA code (Modules for Experiments in Stellar Astrophysics, version 9575), an evaluation was made of the evolutionary state of the epsilon Aurigae binary system (HD 31964, F0Iap + disc). We sought to satisfy several observational constraints: (1) requiring evolutionary tracks to pass close to the current temperature and luminosity of the primary star; (2) obtaining a period near the observed value of 27.1 years; (3) matching a mass function of 3.0; (4) concurrent Roche lobe overflow and mass transfer; (5) an isotopic ratio 12C/13C = 5 and, (6) matching the interferometrically determined angular diameter. A MESA model starting with binary masses of 9.85 + 4.5 M⊙, with a 100 d initial period, produces a 1.2 + 10.6 M⊙ result having a 547 d period, and a single digit 12C/13C ratio. These values were reached near an age of 20 Myr, when the donor star comes close to the observed luminosity and temperature for epsilon Aurigae A, as a post-RGB/pre-AGB star. Contemporaneously, the accretor then appears as an upper main-sequence, early B-type star. This benchmark model can provide a basis for further exploration of this interacting binary, and other long-period binary stars.

Clinical Significance of Epsilon Waves in Arrhythmogenic Cardiomyopathy.

PubMed

Protonotarios, Alexandros; Anastasakis, Aris; Tsatsopoulou, Adalena; Antoniades, Loizos; Prappa, Efstathia; Syrris, Petros; Tousoulis, Dimitrios; McKENNA, William J; Protonotarios, Nikos

2015-07-16

Epsilon waves are hallmark features of arrhythmogenic cardiomyopathy (ACM) but information about their clinical significance is variable. We evaluated epsilon wave prevalence, characteristics, and their clinical significance in an ACM population. Eighty-six unselected patients fulfilling the 2010 Task Force criteria were enrolled. Seventy-six of them were carriers of desmosomal mutations. All subjects were serially evaluated with standard 12-lead ECG and 2-dimensional echocardiography. Epsilon waves were evaluated in all precordial and inferior leads. Novel parameters assessed included their duration and precordial/inferior lead extension. Twenty-five subjects (29%) had epsilon waves that were present in lead V3 and beyond in 9, and in the inferior leads in 7. Epsilon waves were associated with right ventricular outflow tract (RVOT) (P = 0.001) but not RV posterior wall (P = 0.21), RV apex (P = 0.30), or left ventricular (P = 0.94) wall motion abnormalities. Patients with epsilon waves had increased RVOT diameter (P < 0.0001). Extension of epsilon waves in lead V3 and beyond was associated with increased epsilon wave duration (P = 0.002) and RVOT diameter (P = 0.04). The duration of epsilon waves was positively correlated with RVOT diameter (r = 0.70, P = 0.0001). Epsilon waves were also associated with episodes of sustained ventricular tachycardia (P = 0.004) but not with heart failure (P = 0.41) or sudden cardiac death (P = 0.31). Detection of epsilon waves on 12-lead ECG reflects significant RVOT involvement, which was associated with episodes of sustained ventricular tachycardia but not sudden cardiac death. © 2015 Wiley Periodicals, Inc.

Analysis of Fc(epsilon)RI-mediated mast cell stimulation by surface-carried antigens.

PubMed Central

Schweitzer-Stenner, R; Tamir, I; Pecht, I

1997-01-01

Clustering of the type I receptor for IgE (Fc[epsilon]RI) on mast cells initiates a cascade of biochemical processes that result in secretion of inflammatory mediators. To determine the Fc(epsilon)RI proximity, cluster size, and mobility requirements for initiating the Fc(epsilon)RI cascade, a novel experimental protocol has been developed in which mast cells are reacted with glass surfaces carrying different densities of both antigen and bound IgE, and the cell's secretory response to these stimuli is measured. The results have been analyzed in terms of a model based on the following assumptions: 1) the glass surface antigen distribution and consequently that of the bound IgE are random; 2) Fc(epsilon)RI binding to these surface-bound IgEs immobilizes the former and saturates the latter; 3) the cell surface is formally divided into small elements, which function as a secretory stimulus unit when occupied by two or more immobilized IgE-Fc(epsilon)RI complexes; 4) alternatively, similar stimulatory units can be formed by binding of surface-carried IgE dimers to two Fc(epsilon)RI. This model yielded a satisfactory and self-consistent fitting of all of the different experimental data sets. Hence the present results establish the essential role of Fc(epsilon)RI immobilization for initiating its signaling cascade. Moreover, it provides independent support for the notion that as few as two Fc(epsilon)RIs immobilized at van der Waals contact constitute an "elementary stimulatory unit" leading to mast cell (RBL-2H3 line) secretory response. PMID:9168023

The use of transition region characteristics to improve the numerical simulation of heat transfer in bypass transitional flows

NASA Technical Reports Server (NTRS)

Simon, Frederick F.

1993-01-01

A method is presented for improving the numerical prediction of bypass transition heat transfer on a flat plate in a high-disturbance environment with zero or favorable pressure gradient. The method utilizes low Reynolds number k-epsilon turbulence models in combination with the characteristic parameters of the transition region. The parameters representing the characteristics of the transition region used are the intermittency, transition length and turbulent spot properties. An analysis is made of the transition length in terms of turbulent spot variables. The nondimensional spot formation rate, required for the prediction of the transition length, is shown by the analysis to be a function of the spot spreading angle, the dimensionless spot velocity ratio and the dimensionless spot area ratio. The intermittency form of the k-epsilon equations were derived from conditionally averaged equations which have been shown to be an improvement over global-time-averaged equations for the numerical calculation of the transition region. The numerical predictions are in general good agreement with the experimental data and indicate the potential use of the method in accelerating flows. Turbulence models of the k-epsilon type are known to underpredict the transition length. The present work demonstrates how incorporating transition region characteristics improves the ability of two-equation turbulence models to simulate bypass transition for flat plates with potential application to turbine vanes and blades.

Turbulent flow in a 180 deg bend: Modeling and computations

NASA Technical Reports Server (NTRS)

Kaul, Upender K.

1989-01-01

A low Reynolds number k-epsilon turbulence model was presented which yields accurate predictions of the kinetic energy near the wall. The model is validated with the experimental channel flow data of Kreplin and Eckelmann. The predictions are also compared with earlier results from direct simulation of turbulent channel flow. The model is especially useful for internal flows where the inflow boundary condition of epsilon is not easily prescribed. The model partly derives from some observations based on earlier direct simulation results of near-wall turbulence. The low Reynolds number turbulence model together with an existing curvature correction appropriate to spinning cylinder flows was used to simulate the flow in a U-bend with the same radius of curvature as the Space Shuttle Main Engine (SSME) Turn-Around Duct (TAD). The present computations indicate a space varying curvature correction parameter as opposed to a constant parameter as used in the spinning cylinder flows. Comparison with limited available experimental data is made. The comparison is favorable, but detailed experimental data is needed to further improve the curvature model.

Including electromagnetism in K → ππ decay calculations

NASA Astrophysics Data System (ADS)

Christ, Norman; Feng, Xu

2018-03-01

Because of the small size of the ratio A2/A0 of the I = 2 to I = 0 K → ππ decay amplitudes (the ΔI = 1/2 rule) the effects of electromagnetism on A2 may be a factor of 20 larger than given by a naive O(±EM) estimate. Thus, if future calculations of A2 and epsilon'/epsilon are to achieve 10% accuracy, these effects need to be included. Here we present the first steps toward including electromagnetism in a calculation of the standard model K → ππ decay amplitudes using lattice QCD.

Protein kinase C epsilon, which sensitizes skin to sun's UV radiation-induced cutaneous damage and development of squamous cell carcinomas, associates with Stat3.

PubMed

Aziz, Moammir H; Manoharan, Herbert T; Verma, Ajit K

2007-02-01

Chronic exposure to UV radiation (UVR) is the major etiologic factor in the development of human skin cancers including squamous cell carcinoma (SCC). We have shown that protein kinase C(epsilon) (PKC(epsilon)), a Ca(2+)-independent, phospholipid-dependent serine/threonine kinase, is an endogenous photosensitizer. PKC(epsilon) is among the six isoforms (alpha, delta, epsilon, eta, mu, and zeta) expressed in both mouse and human skin. PKC(epsilon) transgenic mice, which overexpress PKC(epsilon) in the basal epidermal cells and cells of the hair follicle, are highly sensitive to UVR-induced cutaneous damage and development of SCC. We now present that PKC(epsilon)-overexpressing, but not PKC(delta)-overexpressing, transgenic mice, when exposed to a single (4 kJ/m(2)) or repeated (four doses, 2 kJ/m(2)/dose, thrice weekly) UVR, emitted by Kodacel-filtered FS-40 sun lamps, elicit constitutive phosphorylation of signal transducers and activators of transcription 3 (Stat3) at both Tyr705 and Ser727 residues. UVR-induced phosphorylation of Stat3 accompanied increased expression of Stat3-regulated genes (c-myc, cyclin D1, cdc25A, and COX-2). In reciprocal immunoprecipitation/blotting experiments, phosphorylated Stat3 co-immunoprecipitated with PKC(epsilon). As observed in vivo using PKC(epsilon) knockout mice and in vitro in an immunocomplex kinase assay, PKC(epsilon) phosphorylated Stat3 at Ser727 residue. These results indicate for the first time that (a) PKC(epsilon) is a Stat3Ser727 kinase; (b) PKC(epsilon)-mediated phosphorylation of StatSer727 may be essential for transcriptional activity of Stat3; and (c) UVR-induced phosphorylation of Ser727 may be a key component of the mechanism by which PKC(epsilon) imparts sensitivity to UVR-induced development of SCC.

Reynolds stress closure modeling in wall-bounded flows

NASA Technical Reports Server (NTRS)

Durbin, Paul A.

1993-01-01

This report describes two projects. Firstly, a Reynolds stress closure for near-wall turbulence is described. It was motivated by the simpler k-epsilon-(v-bar(exp 2)) model described in last year's annual research brief. Direct Numerical Simulation of three-dimensional channel flow shows a curious decrease of the turbulent kinetic energy. The second topic of this report is a model which reproduces this effect. That model is described and used to discuss the relevance of the three dimensional channel flow simulation to swept wing boundary layers.

Turbulence Modeling and Computation of Turbine Aerodynamics and Heat Transfer

NASA Technical Reports Server (NTRS)

Lakshminarayana, B.; Luo, J.

1996-01-01

The objective of the present research is to develop improved turbulence models for the computation of complex flows through turbomachinery passages, including the effects of streamline curvature, heat transfer and secondary flows. Advanced turbulence models are crucial for accurate prediction of rocket engine flows, due to existance of very large extra strain rates, such as strong streamline curvature. Numerical simulation of the turbulent flows in strongly curved ducts, including two 180-deg ducts, one 90-deg duct and a strongly concave curved turbulent boundary layer have been carried out with Reynolds stress models (RSM) and algebraic Reynolds stress models (ARSM). An improved near-wall pressure-strain correlation has been developed for capturing the anisotropy of turbulence in the concave region. A comparative study of two modes of transition in gas turbine, the by-pass transition and the separation-induced transition, has been carried out with several representative low-Reynolds number (LRN) k-epsilon models. Effects of blade surface pressure gradient, freestream turbulence and Reynolds number on the blade boundary layer development, and particularly the inception of transition are examined in detail. The present study indicates that the turbine blade transition, in the presence of high freestream turbulence, is predicted well with LRN k-epsilon models employed. The three-dimensional Navier-Stokes procedure developed by the present authors has been used to compute the three-dimensional viscous flow through the turbine nozzle passage of a single stage turbine. A low Reynolds number k-epsilon model and a zonal k-epsilon/ARSM (algebraic Reynolds stress model) are utilized for turbulence closure. An assessment of the performance of the turbulence models has been carried out. The two models are found to provide similar predictions for the mean flow parameters, although slight improvement in the prediction of some secondary flow quantities has been obtained by the

Expression and purification of functional Clostridium perfringens alpha and epsilon toxins in Escherichia coli.

PubMed

Zhao, Yao; Kang, Lin; Gao, Shan; Zhou, Yang; Su, Libo; Xin, Wenwen; Su, Yuxin; Wang, Jinglin

2011-06-01

The alpha and epsilon toxins are 2 of the 4 major lethal toxins of the pathogen Clostridium perfringens. In this study, the expression of the epsilon toxin (etx) gene of C. perfringens was optimized by replacing rare codons with high-frequency codons, and the optimized gene was synthesized using overlapping PCR. Then, the etx gene or the alpha-toxin gene (cpa) was individually inserted into the pTIG-Trx expression vector with a hexahistidine tag and a thioredoxin (Trx) to facilitate their purification and induce the expression of soluble proteins. The recombinant alpha toxin (rCPA) and epsilon toxin (rETX) were highly expressed as soluble forms in the recipient Escherichia coli BL21 strain, respectively. The rCPA and rETX were purified using Ni(2+)-chelating chromatography and size-exclusion chromatography. And the entire purification process recovered about 40% of each target protein from the starting materials. The purified target toxins formed single band at about 42kDa (rCPA) or 31kDa (rETX) in sodium dodecyl sulfate-polyacrylamide gel electrophoresis, and their functional activity was confirmed by bioactivity assays. We have shown that the production of large amounts of soluble and functional proteins by using the pTIG-Trx vector in E. coli is a good alternative for the production of native alpha and epsilon toxins and could also be useful for the production of other toxic proteins with soluble forms. Copyright © 2011 Elsevier Inc. All rights reserved.

One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases.

PubMed

Cunningham, F X; Gantt, E

2001-02-27

Carotenoids in the photosynthetic membranes of plants typically contain two beta-rings (e.g., beta-carotene and zeaxanthin) or one epsilon- and one beta-ring (e.g., lutein). Carotenoids with two epsilon-rings are uncommon. We reported earlier that the Arabidopsis thaliana lycopene epsilon-cyclase (LCYe) adds one epsilon-ring to the symmetrical linear substrate lycopene, whereas the structurally related lycopene beta-cyclase (LCYb) adds two beta-rings. Here we describe a cDNA encoding LCYe in romaine lettuce (Lactuca sativa var. romaine), one of the few plant species known to accumulate substantial quantities of a carotenoid with two epsilon-rings: lactucaxanthin. The product of the lettuce cDNA, similar in sequence to the Arabidopsis LCYe (77% amino acid identity), efficiently converted lycopene into the bicyclic epsilon-carotene in a heterologous Escherichia coli system. Regions of the lettuce and Arabidopsis epsilon-cyclases involved in the determination of ring number were mapped by analysis of chimeric epsilon-cyclases constructed by using an inverse PCR approach. A single amino acid was found to act as a molecular switch: lettuce LCYe mutant H457L added only one epsilon-ring to lycopene, whereas the complementary Arabidopsis LCYe mutant, L448H, added two epsilon-rings. An R residue in this position also yields a bi-epsilon-cyclase for both the lettuce and Arabidopsis enzymes. Construction and analysis of chimera of related enzymes with differing catalytic activities provide an informative approach that may be of particular utility for studying membrane-associated enzymes that cannot easily be crystallized or modeled to existing crystal structures.

Structural pierce into molecular mechanism underlying Clostridium perfringens Epsilon toxin function.

PubMed

Khalili, Saeed; Jahangiri, Abolfazl; Hashemi, Zahra Sadat; Khalesi, Bahman; Mard-Soltani, Maysam; Amani, Jafar

2017-03-01

Epsilon toxin of the Clostridium perfringens garnered a lot of attention due to its potential for toxicity in humans, extreme potency for cytotoxicity in mice and lack of any approved therapeutics prescribed for human. However, the intricacies of the Epsilon toxin action mechanism are yet to be understood. In this regard, various in silico tools have been exploited to model and refine the 3D structure of the toxin and its two receptors. The receptor proteins were embedded into designed lipid membranes within an aqueous and ionized environment. Thereafter, the modeled structures subjected to series of consecutive molecular dynamics runs to achieve the most natural like coordination for each model. Ultimately, protein-protein interaction analyses were performed to understand the probable action mechanism. The obtained results successfully confirmed the accuracy of employed methods to achieve high quality models for the toxin and its receptors within their lipid bilayers. Molecular dynamics analyses lead the structures to a more native like coordination. Moreover, the results of previous empirical studies were confirmed, while new insights for action mechanisms including the detailed roles of Hepatitis A virus cellular receptor 1 (HAVCR1) and Myelin and lymphocyte protein (MAL) proteins were achieved. In light of previous and our observations, we suggested novel models which elucidated the existing interplay between potential players of Epsilon toxin action mechanism with detailed structural evidences. These models would pave the way to have more robust understanding of the Epsilon toxin biology, more precise vaccine construction and more successful drug (inhibitor) design. Copyright © 2017 Elsevier Ltd. All rights reserved.

1H and 13C NMR studies of molecular dynamics in the biocopolymer of glycolide and epsilon-caprolactone.

PubMed

Nozirov, Farhod; Szczesniak, Eugeniusz; Fojud, Zbigniew; Dobrzynski, Piotr; Klinowski, Jacek; Jurga, Stefan

2002-08-01

Copolymers of glycolide and epsilon-caprolactone were studied using differential scanning calorimetry and solid-state NMR. The variation of the T1 relaxation time with temperature reflects local disorder and can be quantified in terms of the distribution of correlation times predicted by the Davidson-Cole model. T, relaxation is dominated by trans-gauche isomerisation, with an activation energy of 34-35 kJ mol(-1).

X-Ray Reflected Spectra from Accretion Disk Models. II. Diagnostic Tools for X-Ray Observations

NASA Technical Reports Server (NTRS)

Garcia, J.; Kallman, T. R.; Mushotzky, R. F.

2011-01-01

We present a comprehensive study of the emission spectra from accreting sources. We use our new reflection code to compute the reflected spectra from an accretion disk illuminated by X-rays. This set of models covers different values of ionization parameter, solar iron abundance and photon index for the illuminating spectrum. These models also include the most complete and recent atomic data for the inner-shell of the iron and oxygen isonuclear sequences. We concentrate our analysis to the 2 - 10 keV energy region, and in particular to the iron K-shell emission lines. We show the dependency of the equivalent width (EW) of the Fe Ka with the ionization parameter. The maximum value of the EW is approx. 800 eV for models with log Epsilon approx. 1.5, and decreases monotonically as Epsilon increases. For lower values of Epsilon the Fe K(alpha) EW decreases to a minimum near log Epsilon approx. 0.8. We produce simulated CCD observations based on our reflection models. For low ionized, reflection dominated cases, the 2 -10 keV energy region shows a very broad, curving continuum that cannot be represented by a simple power-law. We show that in addition to the Fe K-shell emission, there are other prominent features such as the Si and S L(alpha) lines, a blend of Ar VIII-XI lines, and the Ca x K(alpha) line. In some cases the S xv blends with the He-like Si RRC producing a broad feature that cannot be reproduced by a simple Gaussian profile. This could be used as a signature of reflection.

Modeling and Simulation for an 8 kW Three-Phase Grid-Connected Photo-Voltaic Power System

NASA Astrophysics Data System (ADS)

Cen, Zhaohui

2017-09-01

Gird-connected Photo-Voltaic (PV) systems rated as 5-10 kW level have advantages of scalability and energy-saving, so they are very typical for small-scale household solar applications. In this paper, an 8 kW three-phase grid-connected PV system model is proposed and studied. In this high-fidelity model, some basic PV system components such as solar panels, DC-DC converters, DC-AC inverters and three-phase utility grids are mathematically modelled and organized as a complete simulation model. Also, an overall power controller with Maximum Power Point Control (MPPT) is proposed to achieve both high-efficiency for solar energy harvesting and grid-connection stability. Finally, simulation results demonstrate the effectiveness of the PV system model and the proposed controller, and power quality issues are discussed.

Simulating flame lift-off characteristics of diesel and biodiesel fuels using detailed chemical-kinetic mechanisms and LES turbulence model.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Som, S; Longman, D. E.; Luo, Z

2012-01-01

Combustion in direct-injection diesel engines occurs in a lifted, turbulent diffusion flame mode. Numerous studies indicate that the combustion and emissions in such engines are strongly influenced by the lifted flame characteristics, which are in turn determined by fuel and air mixing in the upstream region of the lifted flame, and consequently by the liquid breakup and spray development processes. From a numerical standpoint, these spray combustion processes depend heavily on the choice of underlying spray, combustion, and turbulence models. The present numerical study investigates the influence of different chemical kinetic mechanisms for diesel and biodiesel fuels, as well asmore » Reynolds-averaged Navier-Stokes (RANS) and large eddy simulation (LES) turbulence models on predicting flame lift-off lengths (LOLs) and ignition delays. Specifically, two chemical kinetic mechanisms for n-heptane (NHPT) and three for biodiesel surrogates are investigated. In addition, the RNG k-{epsilon} (RANS) model is compared to the Smagorinsky based LES turbulence model. Using adaptive grid resolution, minimum grid sizes of 250 {micro}m and 125 {micro}m were obtained for the RANS and LES cases respectively. Validations of these models were performed against experimental data from Sandia National Laboratories in a constant volume combustion chamber. Ignition delay and flame lift-off validations were performed at different ambient temperature conditions. The LES model predicts lower ignition delays and qualitatively better flame structures compared to the RNG k-{epsilon} model. The use of realistic chemistry and a ternary surrogate mixture, which consists of methyl decanoate, methyl 9-decenoate, and NHPT, results in better predicted LOLs and ignition delays. For diesel fuel though, only marginal improvements are observed by using larger size mechanisms. However, these improved predictions come at a significant increase in computational cost.« less

Dilatation-dissipation corrections for advanced turbulence models

NASA Technical Reports Server (NTRS)

Wilcox, David C.

1992-01-01

This paper analyzes dilatation-dissipation based compressibility corrections for advanced turbulence models. Numerical computations verify that the dilatation-dissipation corrections devised by Sarkar and Zeman greatly improve both the k-omega and k-epsilon model predicted effect of Mach number on spreading rate. However, computations with the k-gamma model also show that the Sarkar/Zeman terms cause an undesired reduction in skin friction for the compressible flat-plate boundary layer. A perturbation solution for the compressible wall layer shows that the Sarkar and Zeman terms reduce the effective von Karman constant in the law of the wall. This is the source of the inaccurate k-gamma model skin-friction predictions for the flat-plate boundary layer. The perturbation solution also shows that the k-epsilon model has an inherent flaw for compressible boundary layers that is not compensated for by the dilatation-dissipation corrections. A compressibility modification for k-gamma and k-epsilon models is proposed that is similar to those of Sarkar and Zeman. The new compressibility term permits accurate predictions for the compressible mixing layer, flat-plate boundary layer, and a shock separated flow with the same values for all closure coefficients.

TEMPEST code simulations of hydrogen distribution in reactor containment structures. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trent, D.S.; Eyler, L.L.

The mass transport version of the TEMPEST computer code was used to simulate hydrogen distribution in geometric configurations relevant to reactor containment structures. Predicted results of Battelle-Frankfurt hydrogen distribution tests 1 to 6, and 12 are presented. Agreement between predictions and experimental data is good. Best agreement is obtained using the k-epsilon turbulence model in TEMPEST in flow cases where turbulent diffusion and stable stratification are dominant mechanisms affecting transport. The code's general analysis capabilities are summarized.

Experimental and mathematical modeling of flow in headboxes

NASA Astrophysics Data System (ADS)

Shariati, Mohammad Reza

free jet after the headbox. The overall conclusion from this thesis, obtained by comparison of experimental and computational simulations of the flow in a headbox, is that numerical simulations show great promise for predictions of headbox flows. Mean velocities and turbulence characteristics can now be predicted with fair accuracy by careful use of specialized turbulence models. Standard engineering turbulence models, such as the k-epsilon model and its immediate relatives, should not be used to estimate the turbulence quantities essential for predicting pulp fiber dispersion within the contracting region and free jet of a headbox, particularly when the overall contraction ratio is greater than about five. (Abstract shortened by UMI.)

The use of direct numerical simulation data in turbulence modeling

NASA Technical Reports Server (NTRS)

Mansour, N. N.

1991-01-01

Direct numerical simulations (DNS) of turbulent flows provide a complete data base to develop and to test turbulence models. In this article, the progress made in developing models for the dissipation rate equation is reviewed. New scaling arguments for the various terms in the dissipation rate equation were tested using data from DNS of homogeneous shear flows. Modifications to the epsilon-equation model that take into account near-wall effects were developed using DNS of turbulent channel flows. Testing of new models for flows under mean compression was carried out using data from DNS of isotropically compressed turbulence. In all of these studies the data from the simulations was essential in guiding the model development. The next generation of DNS will be at higher Reynolds numbers, and will undoubtedly lead to improved models for computations of flows of practical interest.

Runaway transient simulation of a model Kaplan turbine

NASA Astrophysics Data System (ADS)

Liu, S.; Zhou, D.; Liu, D.; Wu, Y.; Nishi, M.

2010-08-01

The runaway transient is a typical transient process of a hydro power unit, where the rotational speed of a turbine runner rapidly increases up to the runaway speed under a working head as the guide vanes cannot be closed due to some reason at the load rejection. In the present paper, the characteristics of the runaway transient of a model Kaplan turbine having ns = 479(m-kW) is simulated by using a time-dependent CFD technique where equation of rotational motion of runner, continuity equation and unsteady RANS equations with RNG k-epsilon turbulence model are solved iteratively. In the calculation, unstructured mesh is used to the whole flow passage, which consists of several sub-domains: entrance, casing, stay vanes + guide vanes, guide section, runner and draft tube. And variable speed sliding mesh technique is used to exchange interface flow information between moving part and stationary part, and three-dimensional unstructured dynamic mesh technique is also adopted to ensure mesh quality. Two cases were treated in the simulation of runaway transient characteristics after load rejection: one is the rated operating condition as the initial condition, and the other is the condition at the maximum head. Regarding the runaway speed, the experimental speed is 1.45 times the initial speed and the calculation is 1.47 times the initial for the former case. In the latter case, the experiment and the calculation are 1.67 times and 1.69 times respectively. From these results, it is recognized that satisfactorily prediction will be possible by using the present numerical method. Further, numerical results show that the swirl in the draft-tube flow becomes stronger in the latter part of the transient process so that a vortex rope will occur in the draft tube and its precession will cause the pressure fluctuations which sometimes affect the stability of hydro power system considerably.

Numerical Solutions for the CAWAPI Configuration on Structured Grids at NASA LaRC, United States. Chapter 7

NASA Technical Reports Server (NTRS)

Elmiligui, Alaa A.; Abdol-Hamid, Khaled S.; Massey, Steven J.

2009-01-01

In this chapter numerical simulations of the flow around F-16XL are performed as a contribution to the Cranked Arrow Wing Aerodynamic Project International (CAWAPI) using the PAB3D CFD code. Two turbulence models are used in the calculations: a standard k-epsilon model, and the Shih-Zhu-Lumley (SZL) algebraic stress model. Seven flight conditions are simulated for the flow around the F-16XL where the free stream Mach number varies from 0.242 to 0.97. The range of angles of attack varies from 0 deg to 20 deg. Computational results, surface static pressure, boundary layer velocity profiles, and skin friction are presented and compared with flight data. Numerical results are generally in good agreement with flight data, considering that only one grid resolution is utilized for the different flight conditions simulated in this study. The Algebraic Stress Model (ASM) results are closer to the flight data than the k-epsilon model results. The ASM predicted a stronger primary vortex, however, the origin of the vortex and footprint is approximately the same as in the k-epsilon predictions.

Numerical simulation of flow in a high head Francis turbine with prediction of efficiency, rotor stator interaction and vortex structures in the draft tube

NASA Astrophysics Data System (ADS)

Jošt, D.; Škerlavaj, A.; Morgut, M.; Mežnar, P.; Nobile, E.

2015-01-01

The paper presents numerical simulations of flow in a model of a high head Francis turbine and comparison of results to the measurements. Numerical simulations were done by two CFD (Computational Fluid Dynamics) codes, Ansys CFX and OpenFOAM. Steady-state simulations were performed by k-epsilon and SST model, while for transient simulations the SAS SST ZLES model was used. With proper grid refinement in distributor and runner and with taking into account losses in labyrinth seals very accurate prediction of torque on the shaft, head and efficiency was obtained. Calculated axial and circumferential velocity components on two planes in the draft tube matched well with experimental results.

The remarkable ability of turbulence model equations to describe transition

NASA Technical Reports Server (NTRS)

Wilcox, David C.

1992-01-01

This paper demonstrates how well the k-omega turbulence model describes the nonlinear growth of flow instabilities from laminar flow into the turbulent flow regime. Viscous modifications are proposed for the k-omega model that yield close agreement with measurements and with Direct Numerical Simulation results for channel and pipe flow. These modifications permit prediction of subtle sublayer details such as maximum dissipation at the surface, k approximately y(exp 2) as y approaches 0, and the sharp peak value of k near the surface. With two transition specific closure coefficients, the model equations accurately predict transition for an incompressible flat-plate boundary layer. The analysis also shows why the k-epsilon model is so difficult to use for predicting transition.

Biodistribution and catabolism of 18F-labeled N-epsilon-fructoselysine as a model of Amadori products.

PubMed

Hultsch, Christina; Hellwig, Michael; Pawelke, Beate; Bergmann, Ralf; Rode, Katrin; Pietzsch, Jens; Krause, René; Henle, Thomas

2006-10-01

Amadori products are formed in the early stage of the so-called Maillard reaction between reducing sugars and amino acids or proteins. Such nonenzymatic glycosylation may occur during the heating or storage of foods, but also under physiological conditions. N-epsilon-fructoselysine is formed via this reaction between the epsilon-amino group of peptide-bound lysine and glucose. Despite the fact that, in certain heated foods, up to 50% of lysyl moieties may be modified to such lysine derivatives, up to now, very little is known about the metabolic fate of alimentary administered Amadori compounds. In the present study, N-succinimidyl-4-[18F]fluorobenzoate was used to modify N-epsilon-fructoselysine at the alpha-amino group of the lysyl moiety. The in vitro stability of the resulting 4-[18F]fluorobenzoylated derivative was tested in different tissue homogenates. Furthermore, the 4-[18F]fluorobenzoylated N-epsilon-fructoselysine was used in positron emission tomography studies, as well as in studies concerning biodistribution and catabolism. The results show that the 4-[18F]fluorobenzoylated N-epsilon-fructoselysine is phosphorylated in vitro, as well as in vivo. This phosphorylation is caused by fructosamine 3-kinases and occurs in vivo, particularly in the kidneys. Despite the action of these enzymes, it was shown that a large part of the intravenously applied radiolabeled N-epsilon-fructoselysine was excreted nearly unchanged in the urine. Therefore, it was concluded that the predominant part of peptide-bound lysine that was fructosylated during food processing is not available for nutrition.

A fluid-solid coupling simulation method for convection heat transfer coefficient considering the under-vehicle condition

NASA Astrophysics Data System (ADS)

Tian, C.; Weng, J.; Liu, Y.

2017-11-01

The convection heat transfer coefficient is one of the evaluation indexes of the brake disc performance. The method used in this paper to calculate the convection heat transfer coefficient is a fluid-solid coupling simulation method, because the calculation results through the empirical formula method have great differences. The model, including a brake disc, a car body, a bogie and flow field, was built, meshed and simulated in the software FLUENT. The calculation models were K-epsilon Standard model and Energy model. The working condition of the brake disc was considered. The coefficient of various parts can be obtained through the method in this paper. The simulation result shows that, under 160 km/h speed, the radiating ribs have the maximum convection heat transfer coefficient and the value is 129.6W/(m2·K), the average coefficient of the whole disc is 100.4W/(m2·K), the windward of ribs is positive-pressure area and the leeward of ribs is negative-pressure area, the maximum pressure is 2663.53Pa.

Theoretical and experimental studies on alpha/epsilon-hybrid peptides: design of a 14/12-helix from peptides with alternating (S)-C-linked carbo-epsilon-amino acid [(S)-epsilon-Caa((x))] and L-ala.

PubMed

Sharma, Gangavaram V M; Babu, Bommagani Shoban; Chatterjee, Deepak; Ramakrishna, Kallaganti V S; Kunwar, Ajit C; Schramm, Peter; Hofmann, Hans-Jörg

2009-09-04

An (S)-C-linked carbo-epsilon-amino acid [(S)-epsilon-Caa((x))] was prepared from the known (S)-delta-Caa. This monomer was utilized together with l-Ala to give novel alpha/epsilon-hybrid peptides in 1:1 alternation. Conformational analysis on penta- and hexapeptides by NMR (in CDCl(3)), CD, and MD studies led to the identification of robust 14/12-mixed helices. This is in agreement with the data from a theoretical conformational analysis on the basis of ab initio MO theory providing a complete overview on all formally possible hydrogen-bonded helix patterns of alpha/epsilon-hybrid peptides with 1:1 backbone alternation. The "new motif" of a mixed 14/12-helix was predicted as most stable in vacuum. Obviously, the formation of ordered secondary structures is also possible in peptide foldamers with amino acid constituents of considerable backbone lengths. Thus, alpha/epsilon-hybrid peptides expand the domain of foldamers and allow the introduction of desired functionalities via the alpha-amino acid constituents.

Light focusing using epsilon-near-zero metamaterials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Weiren, E-mail: weiren.zhu@monash.edu; Premaratne, Malin; Si, Li-Ming, E-mail: lms@bit.edu.cn

2013-11-15

We present a strategy of focusing light using epsilon-near-zero metamaterials with embedded dielectric cylinder. The focusing mechanism is analytically investigated, and its accuracy is substantiated by rigorous full-wave simulations. It is found that the focusing intensity is highly depend on the embedded medium and its size, and the magnetic field amplitude of the focused beam itself can reach as high as 98.2 times the incident field. Owing to its versatility, the proposed light focusing system is sure to find applications in fields such as bio-sensing and in nonlinear optics.

Comparison of two turbulence models in simulating an axisymmetric jet evolving into a tank

NASA Astrophysics Data System (ADS)

Zidouni Kendil, F.; Danciu, D.-V.; Lucas, D.; Bousbia Salah, A.; Mataoui, A.

2011-12-01

Experiments and computational fluid dynamics (CFD) simulations have been carried out to investigate a turbulent water jet plunging into a tank filled with the same liquid. To avoid air bubble entrainment which may be caused by surface instabilities, the free falling length of the jet is set to zero. For both impinging region and recirculation zone, measurements are made using Particle Image Velocimetry (PIV). Instantaneous- and time-averaged velocity fields are obtained. Numerical data is obtained on the basis of both κ - epsilon and SSG (Speziale, Sarkar and Gatski) of Reynolds Stresses Turbulent Model (RSM) in three dimensional frame and compared to experimental results via the axial velocity and turbulent kinetic energy. For axial distances lower than 5cm from the jet impact point, the axial velocity matches well the measurements, using both models. A progressive difference is found near the jet for higher axial distances from the jet impact point. Nevertheless, the turbulence kinetic energy agrees very well with the measurements when applying the SSG-RSM model for the lower part of the tank, whereas it is underestimated in the upper region. Inversely, the κ - epsilon model shows better results in the upper part of the water tank and underestimates results for the lower part of the water tank. From the overall results, it can be concluded that, for single phase flow, the κ - epsilon model describes well the average axial velocity, whereas the turbulence kinetic energy is better represented by the SSG-RSM model.

Distribution of Clostridium perfringens epsilon toxin in the brains of acutely intoxicated mice and its effect upon glial cells.

PubMed

Soler-Jover, Alex; Dorca, Jonatan; Popoff, Michel R; Gibert, Maryse; Saura, Josep; Tusell, Josep Maria; Serratosa, Joan; Blasi, Juan; Martín-Satué, Mireia

2007-09-15

Epsilon toxin (epsilon-toxin), produced by Clostridium perfringens types B and D, causes fatal enterotoxaemia in livestock. The disease is principally manifested as severe and often fatal neurological disturbance. Oedema of several organs, including the brain, is also a clinical sign related to microvascular damage. Recombinant epsilon-toxin-green fluorescence protein (epsilon-toxin-GFP) and epsilon-prototoxin-GFP have already been characterised as useful tools to track their distribution in intravenously injected mice, by means of direct fluorescence microscopy detection. The results shown here, using an acutely intoxicated mouse model, strongly suggest that epsilon-toxin-GFP, but not epsilon-prototoxin-GFP, not only causes oedema but is also able to cross the blood-brain barrier and accumulate in brain tissue. In some brain areas, epsilon-toxin-GFP is found bound to glial cells, both astrocytes and microglia. Moreover, cytotoxicity assays, performed with mixed glial primary cultures, demonstrate the cytotoxic effect of epsilon-toxin upon both astrocytes and microglial cells.

Clostridium perfringens epsilon toxin inhibits the gastrointestinal transit in mice.

PubMed

Losada-Eaton, D M; Fernandez-Miyakawa, M E

2010-12-01

Epsilon toxin produced by Clostridium perfringens type B and D is a potent toxin that is responsible for a highly fatal enterotoxemia in sheep and goats. In vitro, epsilon toxin produces contraction of the rat ileum as the result of an indirect action, presumably mediated through the autonomic nervous system. To examine the impact of epsilon toxin in the intestinal transit, gastric emptying (GE) and gastrointestinal transit (GIT) were evaluated after intravenous and oral administration of epsilon toxin in mice. Orally administered epsilon toxin produced a delay on the GIT. Inhibition of the small intestinal transit was observed as early as 1 h after the toxin was administered orally but the effects were not observed after 1 week. Epsilon toxin also produced an inhibition in GE and a delay on the GIT when relatively high toxin concentrations were given intravenously. These results indicate that epsilon toxin administered orally or intravenously to mice transitorily inhibits the GIT. The delay in the GIT induced by epsilon toxin could be relevant in the pathogenesis of C. perfringens type B and D enterotoxemia. Copyright © 2010 Elsevier Ltd. All rights reserved.

Desired Precision in Multi-Objective Optimization: Epsilon Archiving or Rounding Objectives?

NASA Astrophysics Data System (ADS)

Asadzadeh, M.; Sahraei, S.

2016-12-01

Multi-objective optimization (MO) aids in supporting the decision making process in water resources engineering and design problems. One of the main goals of solving a MO problem is to archive a set of solutions that is well-distributed across a wide range of all the design objectives. Modern MO algorithms use the epsilon dominance concept to define a mesh with pre-defined grid-cell size (often called epsilon) in the objective space and archive at most one solution at each grid-cell. Epsilon can be set to the desired precision level of each objective function to make sure that the difference between each pair of archived solutions is meaningful. This epsilon archiving process is computationally expensive in problems that have quick-to-evaluate objective functions. This research explores the applicability of a similar but computationally more efficient approach to respect the desired precision level of all objectives in the solution archiving process. In this alternative approach each objective function is rounded to the desired precision level before comparing any new solution to the set of archived solutions that already have rounded objective function values. This alternative solution archiving approach is compared to the epsilon archiving approach in terms of efficiency and quality of archived solutions for solving mathematical test problems and hydrologic model calibration problems.

Nesprin-2 epsilon: A novel nesprin isoform expressed in human ovary and Ntera-2 cells

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lam, Le Thanh; Boehm, Sabrina V.; Roberts, Roland G.

2011-08-26

Highlights: {yields} A novel epsilon isoform of nesprin-2 has been discovered. {yields} This 120 kDa protein was predicted by bioinformatic analysis, but has not previously been observed. {yields} It is the main isoform expressed in a teratocarcinoma cell line and is also found in ovary. {yields} Like other nesprins, it is located at the nuclear envelope. {yields} We suggest it may have a role in very early development or in some ovary-specific function. -- Abstract: The nuclear envelope-associated cytoskeletal protein, nesprin-2, is encoded by a large gene containing several internal promoters that produce shorter isoforms. In a study of Ntera-2more » teratocarcinoma cells, a novel isoform, nesprin-2-epsilon, was found to be the major mRNA and protein product of the nesprin-2 gene. Its existence was predicted by bioinformatic analysis, but this is the first direct demonstration of both the mRNA and the 120 kDa protein which is located at the nuclear envelope. In a panel of 21 adult and foetal human tissues, the nesprin-2-epsilon mRNA was strongly expressed in ovary but was a minor isoform elsewhere. The expression pattern suggests a possible link with very early development and a likely physiological role in ovary.« less

Coupled field effects in BWR stability simulations using SIMULATE-3K

DOE Office of Scientific and Technical Information (OSTI.GOV)

Borkowski, J.; Smith, K.; Hagrman, D.

1996-12-31

The SIMULATE-3K code is the transient analysis version of the Studsvik advanced nodal reactor analysis code, SIMULATE-3. Recent developments have focused on further broadening the range of transient applications by refinement of core thermal-hydraulic models and on comparison with boiling water reactor (BWR) stability measurements performed at Ringhals unit 1, during the startups of cycles 14 through 17.

Functional identification of a novel 14-3-3 epsilon splicing variant suggests dimerization is not necessary for 14-3-3 epsilon to inhibit UV-induced apoptosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Han, Dingding; Ye, Guangming; Liu, Tingting

2010-05-28

14-3-3 proteins function as a dimer and have been identified to involve in diverse signaling pathways. Here we reported the identification of a novel splicing variant of human 14-3-3 epsilon (14-3-3 epsilon sv), which is derived from a novel exon 1' insertion. The insertion contains a stop codon and leads to a truncated splicing variant of 14-3-3 epsilon. The splicing variant is translated from the exon 2 and results in the deletion of an N-terminal {alpha}-helix which is crucial for the dimerization. Therefore, the 14-3-3 epsilon sv could not form a dimer with 14-3-3 zeta. However, after UV irradiation 14-3-3more » epsilon sv could also support cell survival, suggesting monomer of 14-3-3 epsilon is sufficient to protect cell from apoptosis.« less

Standard Model and New physics for ɛ'k/ɛk

NASA Astrophysics Data System (ADS)

Kitahara, Teppei

2018-05-01

The first result of the lattice simulation and improved perturbative calculations have pointed to a discrepancy between data on ɛ'k/ɛk and the standard-model (SM) prediction. Several new physics (NP) models can explain this discrepancy, and such NP models are likely to predict deviations of ℬ(K → πvv) from the SM predictions, which can be probed precisely in the near future by NA62 and KOTO experiments. We present correlations between ɛ'k/ɛk and ℬ(K → πvv) in two types of NP scenarios: a box dominated scenario and a Z-penguin dominated one. It is shown that different correlations are predicted and the future precision measurements of K → πvv can distinguish both scenarios.

Apolipoprotein E-epsilon 4 allele and familial risk in Alzheimer's disease.

PubMed

Li, G; Silverman, J M; Altstiel, L D; Haroutunian, V; Perl, D P; Purohit, D; Birstein, S; Lantz, M; Mohs, R C; Davis, K L

1996-01-01

Recent studies have found an association between presence of apolipoprotein E (APOE) epsilon 4 allele and Alzheimer's disease (AD). The present study compared the cumulative risk of primary progressive dementia (PPD) in relatives of AD probands carrying at least one copy of the epsilon 4 allele with the relatives of AD probands not carrying epsilon 4 and with relatives of non-demented controls. Our aim was to determine whether the familial aggregation of PPD in relatives of AD probands is primarily due to those carrying epsilon 4. Seventy-seven neuropathologically diagnosed AD patients were obtained as probands through our Alzheimer's Disease Research Center Brain Bank. AD probands were genotyped for APOE. As a comparison group, 198 non-demented probands were also included. Through family informants, demographic and diagnostic data were collected on 382 first-degree relatives (age > or = 45 years) of AD probands and 848 relatives of the controls. We found that the cumulative risk of PPD in both relatives of AD probands with and without the epsilon 4 allele was significantly higher than that in the relatives of non-demented controls. However, the increased risk in the relatives of AD probands with the epsilon 4 allele was marginally, but not significantly, lower than the risk in the relatives of probands without epsilon 4. A greater likelihood of death by heart diseases over developing PPD in relatives of AD probands with epsilon 4 (3.1-fold increase) was found compared to relatives of probands without epsilon 4 (1.7-fold increase), especially prior to age 70, although the difference was not statistically significant. The increased familial risk for PPD in the relatives of AD probands with the APOE-epsilon 4 allele relative to controls suggests that familial factors in addition to APOE-epsilon 4 are risk factors for AD. Differential censorship from increased mortality of heart diseases may have prevented a higher incidence of PPD among the relatives of probands with

MAGNETIC ACTIVITY CYCLES IN THE EXOPLANET HOST STAR {epsilon} ERIDANI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Metcalfe, T. S.; Mathur, S.; Buccino, A. P.

2013-02-01

The active K2 dwarf {epsilon} Eri has been extensively characterized both as a young solar analog and more recently as an exoplanet host star. As one of the nearest and brightest stars in the sky, it provides an unparalleled opportunity to constrain stellar dynamo theory beyond the Sun. We confirm and document the 3-year magnetic activity cycle in {epsilon} Eri originally reported by Hatzes and coworkers, and we examine the archival data from previous observations spanning 45 years. The data show coexisting 3-year and 13-year periods leading into a broad activity minimum that resembles a Maunder minimum-like state, followed bymore » the resurgence of a coherent 3-year cycle. The nearly continuous activity record suggests the simultaneous operation of two stellar dynamos with cycle periods of 2.95 {+-} 0.03 years and 12.7 {+-} 0.3 years, which, by analogy with the solar case, suggests a revised identification of the dynamo mechanisms that are responsible for the so-called 'active' and 'inactive' sequences as proposed by Boehm-Vitense. Finally, based on the observed properties of {epsilon} Eri, we argue that the rotational history of the Sun is what makes it an outlier in the context of magnetic cycles observed in other stars (as also suggested by its Li depletion), and that a Jovian-mass companion cannot be the universal explanation for the solar peculiarities.« less

Binding of epsilon-toxin from Clostridium perfringens in the nervous system.

PubMed

Dorca-Arévalo, Jonatan; Soler-Jover, Alex; Gibert, Maryse; Popoff, Michel R; Martín-Satué, Mireia; Blasi, Juan

2008-09-18

Epsilon-toxin (epsilon-toxin), produced by Clostridium perfringens type D, is the main agent responsible for enterotoxaemia in livestock. Neurological disorders are a characteristic of the onset of toxin poisoning. Epsilon-Toxin accumulates specifically in the central nervous system, where it produces a glutamatergic-mediated excitotoxic effect. However, no detailed study of putative binding structures in the nervous tissue has been carried out to date. Here we attempt to identify specific acceptor moieties and cell targets for epsilon-toxin, not only in the mouse nervous system but also in the brains of sheep and cattle. An epsilon-toxin-GFP fusion protein was produced and used to incubate brain sections, which were then analyzed by confocal microscopy. The results clearly show specific binding of epsilon-toxin to myelin structures. epsilon-Prototoxin-GFP and epsilon-toxin-GFP, the inactive and active forms of the toxin, respectively, showed identical results. By means of pronase E treatment, we found that the binding was mainly associated to a protein component of the myelin. Myelinated peripheral nerve fibres were also stained by epsilon-toxin. Moreover, the binding to myelin was not only restricted to rodents, but was also found in humans, sheep and cattle. Curiously, in the brains of both sheep and cattle, the toxin strongly stained the vascular endothelium, a result that may explain the differences in potency and effect between species. Although the binding of epsilon-toxin to myelin does not directly explain its neurotoxic effect, this feature opens up a new line of enquiry into its mechanism of toxicity and establishes the usefulness of this toxin for the study of the mammalian nervous system.

Naturally acquired antibodies against Clostridium perfringens epsilon toxin in goats.

PubMed

Veschi, Josir Laine A; Bruzzone, Octavio A; Losada-Eaton, Daniela M; Dutra, Iveraldo S; Fernandez-Miyakawa, Mariano E

2008-09-15

Clostridium perfringens type D-producing epsilon toxin is a common cause of death in sheep and goats worldwide. Although anti-epsilon toxin serum antibodies have been detected in healthy non-vaccinated sheep, the information regarding naturally acquired antibodies in ruminants is scanty. The objective of the present report was to characterize the development of naturally acquired antibodies against C. perfringens epsilon toxin in goats. The levels of anti-epsilon toxin antibodies in blood serum of goat kids from two different herds were examined continuously for 14 months. Goats were not vaccinated against any clostridial disease and received heterologous colostrums from cows that were not vaccinated against any clostridial disease. During the survey one of these flocks suffered an unexpectedly severe C. perfringens type D enterotoxemia outbreak. The results showed that natural acquired antibodies against C. perfringens epsilon toxin can appear as early as 6 weeks in young goats and increase with the age without evidence of clinical disease. The enterotoxemia outbreak was coincident with a significant increase in the level of anti-epsilon toxin antibodies.

Clostridium perfringens epsilon toxin is absorbed from different intestinal segments of mice.

PubMed

Losada-Eaton, D M; Uzal, F A; Fernández Miyakawa, M E

2008-06-01

Clostridium perfringens epsilon toxin is a potent toxin responsible for a rapidly fatal enterotoxaemia in several animal species. The pathogenesis of epsilon toxin includes toxicity to endothelial cells and neurons. Although epsilon toxin is absorbed from the gastrointestinal tract, the intestinal regions where the toxin is absorbed and the conditions favoring epsilon toxin absorption are unknown. The aim of this paper was to determine the toxicity of epsilon toxin absorbed from different gastrointestinal segments of mice and to evaluate the influence of the intestinal environment in the absorption of this toxin. Epsilon toxin diluted in one of several different saline solutions was surgically introduced into ligated stomach or intestinal segments of mice. Comparison of the toxicity of epsilon toxin injected in different sections of the gastrointestinal tract showed that this toxin can be absorbed from the small and the large intestine but not from the stomach of mice. The lethality of epsilon toxin was higher when this toxin was injected in the colon than in the small intestine. Low pH, and Na(+) and glucose added to the saline solution increased the toxicity of epsilon toxin injected into the small intestine. This study shows that absorption of epsilon toxin can occur in any intestinal segment of mice and that the physicochemical characteristics of the intestinal content can affect the absorption of this toxin.

Tunable magnetization of infrared epsilon-near-zero media via field-effect modulation

NASA Astrophysics Data System (ADS)

Salary, Mohammad Mahdi; Mosallaei, Hossein

2018-04-01

In this letter, we demonstrate that field effect modulation enables electrical tuning of the effective permeability of epsilon-near-zero (ENZ) media at infrared frequencies. In particular, hexagonal silicon carbide (6H-SiC) is incorporated as an epsilon-near-zero host in a gated 6H-SiC/SiO2/Si heterostructure. The change in the applied voltage leads to a change in the carrier concentration of the accumulation layer formed at the interface of 6H-SiC and SiO2 which can alter the effective permeability of the heterostructure by virtue of the photonic doping effect. We will rigorously model and analyze the structure by linking charge transport and electromagnetic models. The presented mechanism allows for tuning the impedance and magnetization of ENZ materials in real-time while capturing extreme cases of epsilon-and-mu-near-zero and magnetic conductor. As such, it can be used for various applications such as real-time engineering of thermal emission, dynamic switching, reconfigurable tunneling, and holography.

Thermal Optical Properties of Lunar Dust Simulants and Their Constituents

NASA Technical Reports Server (NTRS)

Gaier, James R.; Ellis, Shaneise; Hanks, Nichole

2011-01-01

The total reflectance spectra of lunar simulant dusts (< 20 mm particles) were measured in order to determine their integrated solar absorptance (alpha) and their thermal emittance (epsilon) for the purpose of analyzing the effect of dust on the performance of thermal control surfaces. All of the simulants except one had a wavelength-dependent reflectivity (p (lambda)) near 0.10 over the wavelength range of 8 to 25 microns and so are highly emitting at room temperature and lower. The 300 K emittance (epsilon) of all the lunar simulants except one ranged from 0.78 to 0.92. The exception was Minnesota Lunar Simulant 1 (MLS-1), which has little or no glassy component. In all cases the epsilon was lower for the < 20 micron particles than for larger particles reported earlier. There was considerably more variation in the lunar simulant reflectance in the solar spectral range (250 to 2500 nm) than in the thermal infrared. As expected, the lunar highlands simulants were more reflective in this wavelength range than the lunar mare simulants. The integrated solar absorptance (alpha) of the simulants ranged from 0.39 to 0.75. This is lower than values reported earlier for larger particles of the same simulants (0.41 to 0.82), and for representative mare and highlands lunar soils (0.74 to 0.91). Since the of some mare simulants more closely matched that of highlands lunar soils, it is recommended that and values be the criteria for choosing a simulant for assessing the effects of dust on thermal control surfaces, rather than whether a simulant has been formulated as a highlands or a mare simulant.

Turbulence Modeling Validation, Testing, and Development

NASA Technical Reports Server (NTRS)

Bardina, J. E.; Huang, P. G.; Coakley, T. J.

1997-01-01

The primary objective of this work is to provide accurate numerical solutions for selected flow fields and to compare and evaluate the performance of selected turbulence models with experimental results. Four popular turbulence models have been tested and validated against experimental data often turbulent flows. The models are: (1) the two-equation k-epsilon model of Wilcox, (2) the two-equation k-epsilon model of Launder and Sharma, (3) the two-equation k-omega/k-epsilon SST model of Menter, and (4) the one-equation model of Spalart and Allmaras. The flows investigated are five free shear flows consisting of a mixing layer, a round jet, a plane jet, a plane wake, and a compressible mixing layer; and five boundary layer flows consisting of an incompressible flat plate, a Mach 5 adiabatic flat plate, a separated boundary layer, an axisymmetric shock-wave/boundary layer interaction, and an RAE 2822 transonic airfoil. The experimental data for these flows are well established and have been extensively used in model developments. The results are shown in the following four sections: Part A describes the equations of motion and boundary conditions; Part B describes the model equations, constants, parameters, boundary conditions, and numerical implementation; and Parts C and D describe the experimental data and the performance of the models in the free-shear flows and the boundary layer flows, respectively.

Solving Navier-Stokes Equations with Advanced Turbulence Models on Three-Dimensional Unstructured Grids

NASA Technical Reports Server (NTRS)

Wang, Qun-Zhen; Massey, Steven J.; Abdol-Hamid, Khaled S.; Frink, Neal T.

1999-01-01

USM3D is a widely-used unstructured flow solver for simulating inviscid and viscous flows over complex geometries. The current version (version 5.0) of USM3D, however, does not have advanced turbulence models to accurately simulate complicated flows. We have implemented two modified versions of the original Jones and Launder k-epsilon two-equation turbulence model and the Girimaji algebraic Reynolds stress model in USM3D. Tests have been conducted for two flat plate boundary layer cases, a RAE2822 airfoil and an ONERA M6 wing. The results are compared with those of empirical formulae, theoretical results and the existing Spalart-Allmaras one-equation model.

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling

PubMed Central

Baker, Matthew L.; Hryc, Corey F.; Zhang, Qinfen; Wu, Weimin; Jakana, Joanita; Haase-Pettingell, Cameron; Afonine, Pavel V.; Adams, Paul D.; King, Jonathan A.; Jiang, Wen; Chiu, Wah

2013-01-01

High-resolution structures of viruses have made important contributions to modern structural biology. Bacteriophages, the most diverse and abundant organisms on earth, replicate and infect all bacteria and archaea, making them excellent potential alternatives to antibiotics and therapies for multidrug-resistant bacteria. Here, we improved upon our previous electron cryomicroscopy structure of Salmonella bacteriophage epsilon15, achieving a resolution sufficient to determine the tertiary structures of both gp7 and gp10 protein subunits that form the T = 7 icosahedral lattice. This study utilizes recently established best practice for near-atomic to high-resolution (3–5 Å) electron cryomicroscopy data evaluation. The resolution and reliability of the density map were cross-validated by multiple reconstructions from truly independent data sets, whereas the models of the individual protein subunits were validated adopting the best practices from X-ray crystallography. Some sidechain densities are clearly resolved and show the subunit–subunit interactions within and across the capsomeres that are required to stabilize the virus. The presence of the canonical phage and jellyroll viral protein folds, gp7 and gp10, respectively, in the same virus suggests that epsilon15 may have emerged more recently relative to other bacteriophages. PMID:23840063

Implementation of Advanced Two Equation Turbulence Models in the USM3D Unstructured Flow Solver

NASA Technical Reports Server (NTRS)

Wang, Qun-Zhen; Massey, Steven J.; Abdol-Hamid, Khaled S.

2000-01-01

USM3D is a widely-used unstructured flow solver for simulating inviscid and viscous flows over complex geometries. The current version (version 5.0) of USM3D, however, does not have advanced turbulence models to accurately simulate complicated flow. We have implemented two modified versions of the original Jones and Launder k-epsilon "two-equation" turbulence model and the Girimaji algebraic Reynolds stress model in USM3D. Tests have been conducted for three flat plate boundary layer cases, a RAE2822 airfoil and an ONERA M6 wing. The results are compared with those from direct numerical simulation, empirical formulae, theoretical results, and the existing Spalart-Allmaras one-equation model.

Iron Carbides in Fischer–Tropsch Synthesis: Theoretical and Experimental Understanding in Epsilon-Iron Carbide Phase Assignment

DOE PAGES

Liu, Xing-Wu; Cao, Zhi; Zhao, Shu; ...

2017-09-11

As active phases in low-temperature Fischer–Tropsch synthesis for liquid fuel production, epsilon iron carbides are critically important industrial materials. However, the precise atomic structure of epsilon iron carbides remains unclear, leading to a half-century of debate on the phase assignment of the ε-Fe 2C and ε’-Fe 2.2C. Here, we resolve this decades-long question by a combining theoretical and experimental investigation to assign the phases unambiguously. First, we have investigated the equilibrium structures and thermal stabilities of ε-Fe xC, (x = 1, 2, 2.2, 3, 4, 6, 8) by first-principles calculations. We have also acquired X-ray diffraction patterns and Mössbauer spectramore » for these epsilon iron carbides, and compared them with the simulated results. These analyses indicate that the unit cell of ε-Fe 2C contains only one type of chemical environment for Fe atoms, while ε’-Fe 2.2C has six sets of chemically distinct Fe atoms.« less

Effects of Turbulence Model and Numerical Time Steps on Von Karman Flow Behavior and Drag Accuracy of Circular Cylinder

NASA Astrophysics Data System (ADS)

Amalia, E.; Moelyadi, M. A.; Ihsan, M.

2018-04-01

The flow of air passing around a circular cylinder on the Reynolds number of 250,000 is to show Von Karman Vortex Street Phenomenon. This phenomenon was captured well by using a right turbulence model. In this study, some turbulence models available in software ANSYS Fluent 16.0 was tested to simulate Von Karman vortex street phenomenon, namely k- epsilon, SST k-omega and Reynolds Stress, Detached Eddy Simulation (DES), and Large Eddy Simulation (LES). In addition, it was examined the effect of time step size on the accuracy of CFD simulation. The simulations are carried out by using two-dimensional and three- dimensional models and then compared with experimental data. For two-dimensional model, Von Karman Vortex Street phenomenon was captured successfully by using the SST k-omega turbulence model. As for the three-dimensional model, Von Karman Vortex Street phenomenon was captured by using Reynolds Stress Turbulence Model. The time step size value affects the smoothness quality of curves of drag coefficient over time, as well as affecting the running time of the simulation. The smaller time step size, the better inherent drag coefficient curves produced. Smaller time step size also gives faster computation time.

Experience with turbulence interaction and turbulence-chemistry models at Fluent Inc.

NASA Technical Reports Server (NTRS)

Choudhury, D.; Kim, S. E.; Tselepidakis, D. P.; Missaghi, M.

1995-01-01

This viewgraph presentation discusses (1) turbulence modeling: challenges in turbulence modeling, desirable attributes of turbulence models, turbulence models in FLUENT, and examples using FLUENT; and (2) combustion modeling: turbulence-chemistry interaction and FLUENT equilibrium model. As of now, three turbulence models are provided: the conventional k-epsilon model, the renormalization group model, and the Reynolds-stress model. The renormalization group k-epsilon model has broadened the range of applicability of two-equation turbulence models. The Reynolds-stress model has proved useful for strongly anisotropic flows such as those encountered in cyclones, swirlers, and combustors. Issues remain, such as near-wall closure, with all classes of models.

Two-Equation Low-Reynolds-Number Turbulence Modeling of Transitional Boundary Layer Flows Characteristic of Gas Turbine Blades. Ph.D. Thesis. Final Contractor Report

NASA Technical Reports Server (NTRS)

Schmidt, Rodney C.; Patankar, Suhas V.

1988-01-01

The use of low Reynolds number (LRN) forms of the k-epsilon turbulence model in predicting transitional boundary layer flow characteristic of gas turbine blades is developed. The research presented consists of: (1) an evaluation of two existing models; (2) the development of a modification to current LRN models; and (3) the extensive testing of the proposed model against experimental data. The prediction characteristics and capabilities of the Jones-Launder (1972) and Lam-Bremhorst (1981) LRN k-epsilon models are evaluated with respect to the prediction of transition on flat plates. Next, the mechanism by which the models simulate transition is considered and the need for additional constraints is discussed. Finally, the transition predictions of a new model are compared with a wide range of different experiments, including transitional flows with free-stream turbulence under conditions of flat plate constant velocity, flat plate constant acceleration, flat plate but strongly variable acceleration, and flow around turbine blade test cascades. In general, calculational procedure yields good agreement with most of the experiments.

Distinct families of cis-acting RNA replication elements epsilon from hepatitis B viruses

PubMed Central

Chen, Augustine; Brown, Chris

2012-01-01

The hepadnavirus encapsidation signal, epsilon (ε), is an RNA structure located at the 5′ end of the viral pregenomic RNA. It is essential for viral replication and functions in polymerase protein binding and priming. This structure could also have potential regulatory roles in controlling the expression of viral replicative proteins. In addition to its structure, the primary sequence of this RNA element has crucial functional roles in the viral lifecycle. Although the ε elements in hepadnaviruses share common critical functions, there are some significant differences in mammalian and avian hepadnaviruses, which include both sequence and structural variations.   Here we present several covariance models for ε elements from the Hepadnaviridae. The model building included experimentally determined data from previous studies using chemical probing and NMR analysis. These models have sufficient similarity to comprise a clan. The clan has in common a highly conserved overall structure consisting of a lower-stem, bulge, upper-stem and apical-loop. The models differ in functionally critical regions—notably the two types of avian ε elements have a tetra-loop (UGUU) including a non-canonical UU base pair, while the hepatitis B virus (HBV) epsilon has a tri-loop (UGU). The avian epsilon elements have a less stable dynamic structure in the upper stem. Comparisons between these models and all other Rfam models, and searches of genomes, showed these structures are specific to the Hepadnaviridae. Two family models and the clan are available from the Rfam database. PMID:22418844

An innovative modeling approach using Qual2K and HEC-RAS integration to assess the impact of tidal effect on River Water quality simulation.

PubMed

Fan, Chihhao; Ko, Chun-Han; Wang, Wei-Shen

2009-04-01

Water quality modeling has been shown to be a useful tool in strategic water quality management. The present study combines the Qual2K model with the HEC-RAS model to assess the water quality of a tidal river in northern Taiwan. The contaminant loadings of biochemical oxygen demand (BOD), ammonia nitrogen (NH(3)-N), total phosphorus (TP), and sediment oxygen demand (SOD) are utilized in the Qual2K simulation. The HEC-RAS model is used to: (i) estimate the hydraulic constants for atmospheric re-aeration constant calculation; and (ii) calculate the water level profile variation to account for concentration changes as a result of tidal effect. The results show that HEC-RAS-assisted Qual2K simulations taking tidal effect into consideration produce water quality indices that, in general, agree with the monitoring data of the river. Comparisons of simulations with different combinations of contaminant loadings demonstrate that BOD is the most import contaminant. Streeter-Phelps simulation (in combination with HEC-RAS) is also performed for comparison, and the results show excellent agreement with the observed data. This paper is the first report of the innovative use of a combination of the HEC-RAS model and the Qual2K model (or Streeter-Phelps equation) to simulate water quality in a tidal river. The combination is shown to provide an alternative for water quality simulation of a tidal river when available dynamic-monitoring data are insufficient to assess the tidal effect of the river.

Simulator - Ride, Sally K.

NASA Image and Video Library

1983-05-24

S83-32568 (23 May 1983) --- Astronaut Sally K. Ride, STS-7 mission specialist, straps herself into a seat in the Shuttle Mission Simulator (SMS) in Johnson Space Center?s Mission Simulation and Training Facility. Dr. Ride and the other STS-7 crew members continue their simulations in the motion base simulator in preparation for their flight in the space shuttle Challenger. Launch is scheduled for June 18. Troy Stewart, suit technician, assisted Dr. Ride. Photo credit: NASA

Viscoelastic optical nonlocality of low-loss epsilon-near-zero nanofilms.

PubMed

de Ceglia, Domenico; Scalora, Michael; Vincenti, Maria A; Campione, Salvatore; Kelley, Kyle; Runnerstrom, Evan L; Maria, Jon-Paul; Keeler, Gordon A; Luk, Ting S

2018-06-19

Optical nonlocalities are elusive and hardly observable in traditional plasmonic materials like noble and alkali metals. Here we report experimental observation of viscoelastic nonlocalities in the infrared optical response of epsilon-near-zero nanofilms made of low-loss doped cadmium-oxide. The nonlocality is detectable thanks to the low damping rate of conduction electrons and the virtual absence of interband transitions at infrared wavelengths. We describe the motion of conduction electrons using a hydrodynamic model for a viscoelastic fluid, and find excellent agreement with experimental results. The electrons' elasticity blue-shifts the infrared plasmonic resonance associated with the main epsilon-near-zero mode, and triggers the onset of higher-order resonances due to the excitation of electron-pressure modes above the bulk plasma frequency. We also provide evidence of the existence of nonlocal damping, i.e., viscosity, in the motion of optically-excited conduction electrons using a combination of spectroscopic ellipsometry data and predictions based on the viscoelastic hydrodynamic model.

Microbial synthesis of poly(epsilon-lysine) and its various applications.

PubMed

Shih, Ing-Lung; Shen, Ming-Haw; Van, Yi-Tsong

2006-06-01

This review article deals with the microbial synthesis, physiochemical properties, and potential applications of poly-epsilon-lysine (epsilon-PL), which is a naturally occurring biomaterial that is water soluble, biodegradable, edible and non-toxic toward humans and the environment. The potential applications of epsilon-PL as food preservatives, emulsifying agent, dietary agent, biodegradable fibers, highly water absorbable hydrogels, drug carriers, anticancer agent enhancer, biochip coatings in the fields of food, medicine, agriculture and electronics are also discussed in this review.

Recent Turbulence Model Advances Applied to Multielement Airfoil Computations

NASA Technical Reports Server (NTRS)

Rumsey, Christopher L.; Gatski, Thomas B.

2000-01-01

A one-equation linear turbulence model and a two-equation nonlinear explicit algebraic stress model (EASM) are applied to the flow over a multielement airfoil. The effect of the K-epsilon and K-omega forms of the two-equation model are explored, and the K-epsilon form is shown to be deficient in the wall-bounded regions of adverse pressure gradient flows. A new K-omega form of EASM is introduced. Nonlinear terms present in EASM are shown to improve predictions of turbulent shear stress behind the trailing edge of the main element and near midflap. Curvature corrections are applied to both the one- and two-equation turbulence models and yield only relatively small local differences in the flap region, where the flow field undergoes the greatest curvature. Predictions of maximum lift are essentially unaffected by the turbulence model variations studied.

Turbulence modeling in three-dimensional stenosed arterial bifurcations.

PubMed

Banks, J; Bressloff, N W

2007-02-01

Under normal healthy conditions, blood flow in the carotid artery bifurcation is laminar. However, in the presence of a stenosis, the flow can become turbulent at the higher Reynolds numbers during systole. There is growing consensus that the transitional k-omega model is the best suited Reynolds averaged turbulence model for such flows. Further confirmation of this opinion is presented here by a comparison with the RNG k-epsilon model for the flow through a straight, nonbifurcating tube. Unlike similar validation studies elsewhere, no assumptions are made about the inlet profile since the full length of the experimental tube is simulated. Additionally, variations in the inflow turbulence quantities are shown to have no noticeable affect on downstream turbulence intensity, turbulent viscosity, or velocity in the k-epsilon model, whereas the velocity profiles in the transitional k-omega model show some differences due to large variations in the downstream turbulence quantities. Following this validation study, the transitional k-omega model is applied in a three-dimensional parametrically defined computer model of the carotid artery bifurcation in which the sinus bulb is manipulated to produce mild, moderate, and severe stenosis. The parametric geometry definition facilitates a powerful means for investigating the effect of local shape variation while keeping the global shape fixed. While turbulence levels are generally low in all cases considered, the mild stenosis model produces higher levels of turbulent viscosity and this is linked to relatively high values of turbulent kinetic energy and low values of the specific dissipation rate. The severe stenosis model displays stronger recirculation in the flow field with higher values of vorticity, helicity, and negative wall shear stress. The mild and moderate stenosis configurations produce similar lower levels of vorticity and helicity.

MESA models for the evolutionary status of the epsilon Aurigae disk-eclipsed binary system

NASA Astrophysics Data System (ADS)

Stencel, Robert E.; Gibson, Justus

2018-06-01

The brightest member of the class of disk-eclipsed binary stars is the Algol-like long-period binary, epsilon Aurigae (HD 31964, F0Iap + disk, http://adsabs.harvard.edu/abs/2016SPIE.9907E..17S ). Using MESA (Modules for Experiments in Stellar Astrophysics, version 9575), we have made an evaluation of its evolutionary state. We sought to satisfy several observational constraints, including: (1) requiring evolutionary tracks to pass close to the current temperature and luminosity of the primary star; (2) obtaining a period near the observed value of 27.1 years; (3) matching a mass function of 3.0; (4) concurrent Roche lobe overflow and mass transfer; (5) an isotopic ratio 12C / 13C = 5 and, (6) matching the interferometrically determined angular diameter. A MESA model starting with binary masses of 9.85 + 4.5 solar masses, with a 100 day initial period, produces a 1.2 + 10.6 solar masses result having a 547 day period, plus a single digit 12C / 13C ratio. These values were reached near an age of 20 Myr, when the donor star comes close to the observed luminosity and temperature for epsilon Aurigae A, as a post-RGB/pre-AGB star. Contemporaneously, the accretor then appears as an upper main sequence, early B-type star. This benchmark model can provide a basis for further exploration of this interacting binary, and other long period binary stars. This report has been submitted to MNRAS, along with a parallel investigation of mass transfer stream and disk sub-structure. The authors are grateful to the estate of William Herschel Womble for the support of astronomy at the University of Denver.

Dominant-negative inhibitors of the Clostridium perfringens epsilon-toxin.

PubMed

Pelish, Teal M; McClain, Mark S

2009-10-23

The Clostridium perfringens epsilon-toxin is responsible for a severe, often lethal intoxication. In this study, we characterized dominant-negative inhibitors of the epsilon-toxin. Site-specific mutations were introduced into the gene encoding epsilon-toxin, and recombinant proteins were expressed in Escherichia coli. Paired cysteine substitutions were introduced at locations predicted to form a disulfide bond. One cysteine in each mutant was introduced into the membrane insertion domain of the toxin; the second cysteine was introduced into the protein backbone. Mutant proteins with cysteine substitutions at amino acid positions I51/A114 and at V56/F118 lacked detectable cytotoxic activity in a MDCK cell assay. Cytotoxic activity could be reconstituted in both mutant proteins by incubation with dithiothreitol, indicating that the lack of cytotoxic activity was attributable to the formation of a disulfide bond. Fluorescent labeling of the cysteines also indicated that the introduced cysteines participated in a disulfide bond. When equimolar mixtures of wild-type epsilon-toxin and mutant proteins were added to MDCK cells, the I51C/A114C and V56C/F118C mutant proteins each inhibited the activity of wild-type epsilon-toxin. Further analysis of the inhibitory activity of the I51C/A114C and V56C/F118C mutant proteins indicated that these proteins inhibit the ability of the active toxin to form stable oligomeric complexes in the context of MDCK cells. These results provide further insight into the properties of dominant-negative inhibitors of oligomeric pore-forming toxins and provide the basis for developing new therapeutics for treating intoxication by epsilon-toxin.

Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.

PubMed

Cho, Jin-Young; Lee, Hyoung-Joo; Jeong, Seul-Ki; Paik, Young-Ki

2017-12-01

Mass spectrometry (MS) is a widely used proteome analysis tool for biomedical science. In an MS-based bottom-up proteomic approach to protein identification, sequence database (DB) searching has been routinely used because of its simplicity and convenience. However, searching a sequence DB with multiple variable modification options can increase processing time, false-positive errors in large and complicated MS data sets. Spectral library searching is an alternative solution, avoiding the limitations of sequence DB searching and allowing the detection of more peptides with high sensitivity. Unfortunately, this technique has less proteome coverage, resulting in limitations in the detection of novel and whole peptide sequences in biological samples. To solve these problems, we previously developed the "Combo-Spec Search" method, which uses manually multiple references and simulated spectral library searching to analyze whole proteomes in a biological sample. In this study, we have developed a new analytical interface tool called "Epsilon-Q" to enhance the functions of both the Combo-Spec Search method and label-free protein quantification. Epsilon-Q performs automatically multiple spectral library searching, class-specific false-discovery rate control, and result integration. It has a user-friendly graphical interface and demonstrates good performance in identifying and quantifying proteins by supporting standard MS data formats and spectrum-to-spectrum matching powered by SpectraST. Furthermore, when the Epsilon-Q interface is combined with the Combo-Spec search method, called the Epsilon-Q system, it shows a synergistic function by outperforming other sequence DB search engines for identifying and quantifying low-abundance proteins in biological samples. The Epsilon-Q system can be a versatile tool for comparative proteome analysis based on multiple spectral libraries and label-free quantification.

Applying Turbulence Models to Hydroturbine Flows: A Sensitivity Analysis Using the GAMM Francis Turbine

NASA Astrophysics Data System (ADS)

Lewis, Bryan; Cimbala, John; Wouden, Alex

2011-11-01

Turbulence models are generally developed to study common academic geometries, such as flat plates and channels. Creating quality computational grids for such geometries is trivial, and allows stringent requirements to be met for boundary layer grid refinement. However, engineering applications, such as flow through hydroturbines, require the analysis of complex, highly curved geometries. To produce body-fitted grids for such geometries, the mesh quality requirements must be relaxed. Relaxing these requirements, along with the complexity of rotating flows, forces turbulence models to be employed beyond their developed scope. This study explores the solution sensitivity to boundary layer grid quality for various turbulence models and boundary conditions currently implemented in OpenFOAM. The following models are resented: k-omega, k-omega SST, k-epsilon, realizable k-epsilon, and RNG k-epsilon. Standard wall functions, adaptive wall functions, and sub-grid integration are compared using various grid refinements. The chosen geometry is the GAMM Francis Turbine because experimental data and comparison computational results are available for this turbine. This research was supported by a grant from the DoE and a National Defense Science and Engineering Graduate Fellowship.

Does one need the O({epsilon})- and O({epsilon}{sup 2})-terms of one-loop amplitudes in a next-to-next-to-leading order calculation ?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Weinzierl, Stefan

2011-10-01

This article discusses the occurrence of one-loop amplitudes within a next-to-next-to-leading-order calculation. In a next-to-next-to-leading-order calculation, the one-loop amplitude enters squared and one would therefore naively expect that the O({epsilon})- and O({epsilon}{sup 2})-terms of the one-loop amplitudes are required. I show that the calculation of these terms can be avoided if a method is known, which computes the O({epsilon}{sup 0})-terms of the finite remainder function of the two-loop amplitude.

Multiple groups of endogenous epsilon-like retroviruses conserved across primates.

PubMed

Brown, Katherine; Emes, Richard D; Tarlinton, Rachael E

2014-11-01

Several types of cancer in fish are caused by retroviruses, including those responsible for major outbreaks of disease, such as walleye dermal sarcoma virus and salmon swim bladder sarcoma virus. These viruses form a phylogenetic group often described as the epsilonretrovirus genus. Epsilon-like retroviruses have become endogenous retroviruses (ERVs) on several occasions, integrating into germ line cells to become part of the host genome, and sections of fish and amphibian genomes are derived from epsilon-like retroviruses. However, epsilon-like ERVs have been identified in very few mammals. We have developed a pipeline to screen full genomes for ERVs, and using this pipeline, we have located over 800 endogenous epsilon-like ERV fragments in primate genomes. Genomes from 32 species of mammals and birds were screened, and epsilon-like ERV fragments were found in all primate and tree shrew genomes but no others. These viruses appear to have entered the genome of a common ancestor of Old and New World monkeys between 42 million and 65 million years ago. Based on these results, there is an ancient evolutionary relationship between epsilon-like retroviruses and primates. Clearly, these viruses had the potential to infect the ancestors of primates and were at some point a common pathogen in these hosts. Therefore, this result raises questions about the potential of epsilonretroviruses to infect humans and other primates and about the evolutionary history of these retroviruses. Epsilonretroviruses are a group of retroviruses that cause several important diseases in fish. Retroviruses have the ability to become a permanent part of the DNA of their host by entering the germ line as endogenous retroviruses (ERVs), where they lose their infectivity over time but can be recognized as retroviruses for millions of years. Very few mammals are known to have epsilon-like ERVs; however, we have identified over 800 fragments of endogenous epsilon-like ERVs in the genomes of all major

Viscoelastic optical nonlocality of doped cadmium oxide epsilon-near-zero thin films

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luk, Ting S.; De Ceglia, Domenico; Scalora, Michael

Optical nonlocalities are elusive and hardly observable in traditional plasmonic materials like noble and alkali metals. Here we experimentally observe and theoretically model viscoelastic nonlocalities in the infrared optical response of a doped, cadmium oxide epsilon-near-zero thin film. The nonlocality is clearly detectable thanks to the low damping rate of conduction electrons and the virtual absence of interband transitions at infrared wavelengths. We describe the motion of conduction electrons using a hydrodynamic model for a viscoelastic fluid, and find excellent agreement with experimental results. The electrons’ elasticity blue-shifts the infrared plasmonic resonance associated with the main epsilon-near-zero mode, and triggersmore » the onset of higher-order resonances due to the excitation of electron-pressure modes above the bulk plasma frequency. We also provide evidence of the existence of nonlocal damping, i.e., viscosity, in the motion of optically-excited conduction electrons using a combination of spectroscopic ellipsometry data and predictions based on the viscoelastic hydrodynamic model.« less

Modeling of confined turbulent fluid-particle flows using Eulerian and Lagrangian schemes

NASA Technical Reports Server (NTRS)

Adeniji-Fashola, A.; Chen, C. P.

1990-01-01

Two important aspects of fluid-particulate interaction in dilute gas-particle turbulent flows (the turbulent particle dispersion and the turbulence modulation effects) are addressed, using the Eulerian and Lagrangian modeling approaches to describe the particulate phase. Gradient-diffusion approximations are employed in the Eulerian formulation, while a stochastic procedure is utilized to simulate turbulent dispersion in the Lagrangina formulation. The k-epsilon turbulence model is used to characterize the time and length scales of the continuous phase turbulence. Models proposed for both schemes are used to predict turbulent fully-developed gas-solid vertical pipe flow with reasonable accuracy.

Association of apolipoprotein E allele {epsilon}4 with late-onset sporadic Alzheimer`s disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucotte, G.; David, F.; Berriche, S.

1994-09-15

Apolipoprotein E, type {epsilon}4 allele (ApoE {epsilon}4), is associated with late-onset sporadic Alzheimer`s disease (AD) in French patients. The association is highly significant (0.45 AD versus 0.12 controls for {epsilon}4 allele frequencies). These data support the involvement of ApoE {epsilon}4 allele as a very important risk factor for the clinical expression of AD. 22 refs., 1 fig., 3 tabs.

Selection of a Clostridium perfringens type D epsilon toxin producer via dot-blot test.

PubMed

Gonçalves, Luciana A; Lobato, Zélia I P; Silva, Rodrigo O S; Salvarani, Felipe M; Pires, Prhiscylla S; Assis, Ronnie A; Lobato, Francisco C F

2009-11-01

Clostridium perfringens type D produces enterotoxemia, an enteric disease in ruminants, also known as pulpy kidney disease. Caused by epsilon toxin, enterotoxemia is a major exotoxin produced by this microorganism. Epsilon toxin is also the main component of vaccines against this enteric disorder. In this study, a standardized dot-blot was used to choose strains of C. perfringens type D that are producers of epsilon toxin. Clones producing epsilon toxin were chosen by limiting dilution; after three passages, lethal minimum dose titers were determined by soroneutralization test in mice. These clones produced epsilon toxin 240 times more concentrated than the original strain. The presence of the epsilon toxin gene (etx) was verified by polymerase chain reaction. All clones were positive, including those determined to be negative by dot-blot tests, suggesting that mechanisms in addition to the presence of the etx gene can influence toxin production. The dot-blot test was efficient for the selection of toxigenic colonies of C. perfringens type D and demonstrated that homogeneous populations selected from toxigenic cultures produce higher titers of epsilon toxin.

Kolmogorov Behavior of Near-Wall Turbulence and Its Application in Turbulence Modeling

NASA Technical Reports Server (NTRS)

Shih, Tsan-Hsing; Lumley, John L.

1992-01-01

The near-wall behavior of turbulence is re-examined in a way different from that proposed by Hanjalic and Launder and followers. It is shown that at a certain distance from the wall, all energetic large eddies will reduce to Kolmogorov eddies (the smallest eddies in turbulence). All the important wall parameters, such as friction velocity, viscous length scale, and mean strain rate at the wall, are characterized by Kolmogorov microscales. According to this Kolmogorov behavior of near-wall turbulence, the turbulence quantities, such as turbulent kinetic energy, dissipation rate, etc. at the location where the large eddies become Kolmogorov eddies, can be estimated by using both direct numerical simulation (DNS) data and asymptotic analysis of near-wall turbulence. This information will provide useful boundary conditions for the turbulent transport equations. As an example, the concept is incorporated in the standard k-epsilon model which is then applied to channel and boundary flows. Using appropriate boundary conditions (based on Kolmogorov behavior of near-wall turbulence), there is no need for any wall-modification to the k-epsilon equations (including model constants). Results compare very well with the DNS and experimental data.

A new fully human recombinant FSH (follitropin epsilon): two phase I randomized placebo and comparator-controlled pharmacokinetic and pharmacodynamic trials.

PubMed

Abd-Elaziz, Khalid; Duijkers, Ingrid; Stöckl, Lars; Dietrich, Bruno; Klipping, Christine; Eckert, Kelvin; Goletz, Steffen

2017-08-01

performed by the investigators, such as transvaginal ultrasound assessments, may have been subject to personal bias. No prospective calculations of statistical power had been made, as is common practice for first in human and early phase I studies in healthy volunteers. These early development studies showed that follitropin epsilon exhibits comparable PK characteristics, as well as inducing stronger PD effects in terms of follicle growth and serum inhibin B, than the comparators. Follitropin epsilon induced a dose-dependent increase in follicular growth. The results warrant further studies with this new fully human recombinant FSH. The studies were sponsored by GLYCOTOPE GmbH, Berlin, Germany. K.A-E. is an employee of QPS-Netherlands, B.V., which received funding for the studies from Glycotope GmbH; I.D. and C.K. are employees of Dinox B.V., which received funding for the studies from Glycotope GmbH; L.S. and S.G. are employees and shareholders of Glycotope GmbH; B.D. and K.E. are employees of Glycotope GmbH. www.clinicaltrials.gov: NCT01354886 (single-dose); NCT01477073 (multiple-dose). The single-dose trial was registered on 11 May 2011 while the multiple-dose trial was registered on 09 November 2011. First subject was enroled in the single-dose trial in 27 April 2011 and in the multiple-dose trial in 02 October 2011. © The Author 2017. Published by Oxford University Press on behalf of the European Society of Human Reproduction and Embryology. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Examination of various turbulence models for application in liquid rocket thrust chambers

NASA Technical Reports Server (NTRS)

Hung, R. J.

1991-01-01

There is a large variety of turbulence models available. These models include direct numerical simulation, large eddy simulation, Reynolds stress/flux model, zero equation model, one equation model, two equation k-epsilon model, multiple-scale model, etc. Each turbulence model contains different physical assumptions and requirements. The natures of turbulence are randomness, irregularity, diffusivity and dissipation. The capabilities of the turbulence models, including physical strength, weakness, limitations, as well as numerical and computational considerations, are reviewed. Recommendations are made for the potential application of a turbulence model in thrust chamber and performance prediction programs. The full Reynolds stress model is recommended. In a workshop, specifically called for the assessment of turbulence models for applications in liquid rocket thrust chambers, most of the experts present were also in favor of the recommendation of the Reynolds stress model.

Effects of sterilisation by high-energy radiation on biomedical poly-(epsilon-caprolactone)/hydroxyapatite composites.

PubMed

Di Foggia, Michele; Corda, Ugo; Plescia, Elena; Taddei, Paola; Torreggiani, Armida

2010-06-01

The effects of a high energy sterilization treatment on poly-epsilon-caprolactone/carbonated hydroxyapatite composites have been investigated. Poly-epsilon-caprolactone is a biodegradable polymer used as long-term bioresorbable scaffold for bone tissue engineering and carbonated hydroxyapatite is a bioactive material able to promote bone growth. The composites were gamma-irradiated in air or under nitrogen atmosphere with doses ranging from 10 to 50 kGy (i.e. to a value higher than that recommended for sterilization). The effects of the irradiation treatment were evaluated by vibrational spectroscopy (IR and Raman spectroscopies) coupled to thermal analysis (Differential Scanning Calorimetry and Thermogravimetry) and Electron Paramagnetic Resonance spectroscopy. Irradiation with the doses required for sterilization induced acceptable structural changes and damaging effects: only a very slight fragmentation of the polymeric chains and some defects in the inorganic component were observed. Moreover, the radiation sensitivity of the composites proved almost the same under the two different atmospheres.

Facts About Delta Pi Epsilon

ERIC Educational Resources Information Center

Delta Pi Epsilon Journal, 1976

1976-01-01

The article discusses the purpose and structure of Delta Pi Epsilon and the general qualifications for membership. Service projects and publications, research awards, timely facts, the year of each chapter's origination, national presidents, and executive secretaries for the last 40 years are listed. (BP)

epsilon-N-trimethyllysine availability regulates the rate of carnitine biosynthesis in the growing rat

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rebouche, C.J.; Lehman, L.J.; Olson, L.

1986-05-01

Rates of carnitine biosynthesis in mammals depend on the availability of substrates and the activity of enzymes subserving the pathway. This study was undertaken to test the hypothesis that the availability of epsilon-N-trimethyllysine is rate-limiting for synthesis of carnitine in the growing rat and to evaluate diet as a source of this precursor for carnitine biosynthesis. Rats apparently absorbed greater than 90% of a tracer dose of (methyl-/sup 3/H)epsilon-N-trimethyllysine, and approximately 30% of that was incorporated into tissues as (/sup 3/H)carnitine. Rats given oral supplements of epsilon-N-trimethyllysine (0.5-20 mg/d), but no dietary carnitine, excreted more carnitine than control animals receivingmore » no dietary epsilon-N-trimethyllysine or carnitine. Rates of carnitine excretion increased in a dose-dependent manner. Tissue and serum levels of carnitine also increased with dietary epsilon-N-trimethyllysine supplementation. There was no evidence that the capacity for carnitine biosynthesis was saturated even at the highest level of oral epsilon-N-trimethyllysine supplementation. Common dietary proteins (casein, soy protein and wheat gluten) were found to be poor sources of epsilon-N-trimethyllysine for carnitine biosynthesis. The results of this study indicate that the availability of epsilon-N-trimethyllysine limits the rate of carnitine biosynthesis in the growing rat.« less

IRFK2D: a computer program for simulating intrinsic random functions of order k

NASA Astrophysics Data System (ADS)

Pardo-Igúzquiza, Eulogio; Dowd, Peter A.

2003-07-01

IRFK2D is an ANSI Fortran-77 program that generates realizations of an intrinsic function of order k (with k equal to 0, 1 or 2) with a permissible polynomial generalized covariance model. The realizations may be non-conditional or conditioned to the experimental data. The turning bands method is used to generate realizations in 2D and 3D from simulations of an intrinsic random function of order k along lines that span the 2D or 3D space. The program generates two output files, the first containing the simulated values and the second containing the theoretical generalized variogram for different directions together with the theoretical model. The experimental variogram is calculated from the simulated values while the theoretical variogram is the specified generalized covariance model. The generalized variogram is used to assess the quality of the simulation as measured by the extent to which the generalized covariance is reproduced by the simulation. The examples given in this paper indicate that IRFK2D is an efficient implementation of the methodology.

Oligomer formation of Clostridium perfringens epsilon-toxin is induced by activation of neutral sphingomyelinase.

PubMed

Takagishi, Teruhisa; Oda, Masataka; Takehara, Masaya; Kobayashi, Keiko; Nagahama, Masahiro

2016-11-01

Clostridium perfringens epsilon-toxin is responsible for fatal enterotoxemia in ungulates. The toxin forms a heptamer in the lipid rafts of Madin-Darby Canine Kidney (MDCK) cells, leading to cell death. Here, we showed that epsilon-toxin requires neutral sphingomyelinase (nSMase) activity during oligomerization. We tested the role of nSMase in the oligomerization of epsilon-toxin using specific inhibitors, knockdown of nSMase, formation of ceramide, and localization of epsilon-toxin and ceramide by immunofluorescence staining. Epsilon-toxin induced the production of ceramide is a dose- and time-dependent manner in ACHN cells. GW4869, an inhibitor of nSMase, inhibited ceramide production induced by the toxin. GW4869 and knockdown of nSMase blocked toxin-induced cell death and oligomer formation of epsilon-toxin. Confocal microscopy images showed that the toxin induced ceramide clustering and colocalized with ceramide. These results demonstrated that oligomer formation of epsilon-toxin is facilitated by the production of ceramide through activation of nSMase caused by the toxin. Inhibitors of nSMase may confer protection against infection. Copyright © 2016 Elsevier B.V. All rights reserved.

Cooperativity Between Oncogenic PKC Epsilon and Pten Loss in Prostate Cancer Progression

DTIC Science & Technology

2015-10-01

AWARD NUMBER: W81XWH-14-1-0535 TITLE: “Cooperativity Between Oncogenic PKC Epsilon and Pten Loss in Prostate Cancer Progression” PRINCIPAL...3. DATES COVERED 30 Sep 2014 - 29 Sep 2015 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER Cooperativity Between Oncogenic PKC Epsilon and Pten Loss in...the s-econd leadi.ng caus.e of cmcer-related deaths .unong wen in thee United States. Protein kinase C epsilon (PKCs), a me-mber of the PKC £uuily

Phase Stability of Epsilon and Gamma HNIW (CL-20) at High-Pressure and Temperature

NASA Astrophysics Data System (ADS)

Gump, Jared

2007-06-01

Hexanitrohexaazaisowurtzitane (CL-20) is one of the few ingredients developed since World War II to be considered for transition to military use. Five polymorphs have been identified for CL-20 by FTIR measurements (α, β, γ, ɛ, and ζ). As CL-20 is transitioned into munitions it will become necessary to predict its response under conditions of detonation, for performance evaluation. Such predictive modeling requires a phase diagram and basic thermodynamic properties of the various phases at high pressure and temperature. Theoretical calculations have been performed for a variety of explosive ingredients including CL-20, but it was noted that no experimental measurements existed for comparison with the theoretical bulk modulus calculated for CL-20. Therefore, the phase stabilities of epsilon and gamma CL-20 at static high-pressure and temperature were investigated using synchrotron angle-dispersive x-ray diffraction experiments. The samples were compressed and heated using diamond anvil cells (DAC). Pressures and temperatures achieved were around 5GPa and 175^oC, respectively. No phase change (from the starting epsilon phase) was observed under hydrostatic compression up to 6.3 GPa at ambient temperature. Under ambient pressure the epsilon phase was determined to be stable to a temperature of 120^oC. When heating above 125^oC the gamma phase appeared and it remained stable until thermal decomposition occurred above 150^oC. The gamma phase exhibits a phase change upon compression at both ambient temperature and 140^oC. Pressure -- volume data for the epsilon and gamma phase at ambient temperature and the epsilon phase at 75^oC were fit to the Birch-Murnaghan formalism to obtain isothermal equations of state.

Simulator - Ride, Sally K.

NASA Image and Video Library

1983-05-24

S83-32571 (23 May 1983) --- Four-fifths of the STS-7 crew take a break from simulations in the Johnson Space Center?s Mission Simulation and Training Facility and pose for NASA photographer. Standing on the steps leading into the motion-based Shuttle Mission Simulator (SMS) are (left to right) astronauts Robert L. Crippen, John M. Fabian, Frederick H. Hauck and Sally K. Ride. Crippen is crew commander; Hauck, pilot; and Fabian and Ride are mission specialists, along with Norman E. Thagard (not involved in this phase of training and not pictured). Photo credit: NASA

Clostridium perfringens type-D enterotoxaemia in cattle: the diagnostic significance of intestinal epsilon toxin.

PubMed

Jones, A L; Dagleish, M P; Caldow, G L

2015-10-17

The aims of this study were to describe 42 cases of Clostridium perfringens type-D enterotoxaemia in cattle seen between 2003 and 2014 and to determine the diagnostic value of detecting epsilon toxin in bovine intestinal content. All cases in the series had histological brain changes considered pathognomonic for C. perfringens type-D enterotoxaemia in sheep and goats and the epsilon toxin of C. perfringens was concurrently detected in the intestinal contents of 15 (36 per cent) cases. The data from the case series indicate that intestinal epsilon toxin has a sensitivity of 56 per cent compared with histology of the brain for diagnosis of bovine C. perfringens type-D enterotoxaemia. The diagnostic specificity of detecting epsilon toxin in bovine intestinal content was investigated by screening intestinal contents of 60 bovine carcases submitted for postmortem examination. Epsilon toxin was detected in 11 (18 per cent) carcases but no pathognomonic histological brain change was found in any. The specificity of intestinal epsilon toxin was estimated to be 80.4 per cent. These studies demonstrate that for a definitive diagnosis of C. perfringens type-D enterotoxaemia in cattle histological examination of the brain is essential as the presence of epsilon toxin in the intestinal contents alone is neither sensitive nor specific enough. British Veterinary Association.

Preliminary testing of turbulence and radionuclide transport modeling in deep ocean environment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Onishi, Y.; Dummuller, D.C.; Trent, D.S.

Pacific Northwest Laboratory (PNL) performed a study for the US Environmental Protection Agency's Office of Radiation Programs to (1) identify candidate models for regional modeling of low-level waste ocean disposal sites in the mid-Atlantic ocean; (2) evaluate mathematical representation of the model's eddy viscosity/dispersion coefficients; and (3) evaluate the adequacy of the k-{epsilon} turbulence model and the feasibility of one of the candidate models, TEMPEST{copyright}/FLESCOT{copyright}, to deep-ocean applications on a preliminary basis. PNL identified the TEMPEST{copyright}/FLESCOT{copyright}, FLOWER, Blumberg's, and RMA 10 models as appropriate candidates for the regional radionuclide modeling. Among these models, TEMPEST/FLESCOT is currently the only model thatmore » solves distributions of flow, turbulence (with the k-{epsilon} model), salinity, water temperature, sediment, dissolved contaminants, and sediment-sorbed contaminants. Solving the Navier-Stokes equations using higher order correlations is not practical for regional modeling because of the prohibitive computational requirements; therefore, the turbulence modeling is a more practical approach. PNL applied the three-dimensional code, TEMPEST{copyright}/FLESCOT{copyright} with the k-{epsilon} model, to a very simple, hypothetical, two-dimensional, deep-ocean case, producing at least qualitatively appropriate results. However, more detailed testing should be performed for the further testing of the code. 46 refs., 39 figs., 6 tabs.« less

Functional analysis of neutralizing antibodies against Clostridium perfringens epsilon-toxin.

PubMed

McClain, Mark S; Cover, Timothy L

2007-04-01

The Clostridium perfringens epsilon-toxin causes a severe, often fatal illness (enterotoxemia) characterized by cardiac, pulmonary, kidney, and brain edema. In this study, we examined the activities of two neutralizing monoclonal antibodies against the C. perfringens epsilon-toxin. Both antibodies inhibited epsilon-toxin cytotoxicity towards cultured MDCK cells and inhibited the ability of the toxin to form pores in the plasma membranes of cells, as shown by staining cells with the membrane-impermeant dye 7-aminoactinomycin D. Using an antibody competition enzyme-linked immunosorbent assay (ELISA), a peptide array, and analysis of mutant toxins, we mapped the epitope recognized by one of the neutralizing monoclonal antibodies to amino acids 134 to 145. The antibody competition ELISA and analysis of mutant toxins suggest that the second neutralizing monoclonal antibody also recognizes an epitope in close proximity to this region. The region comprised of amino acids 134 to 145 overlaps an amphipathic loop corresponding to the putative membrane insertion domain of the toxin. Identifying the epitopes recognized by these neutralizing antibodies constitutes an important first step in the development of therapeutic agents that could be used to counter the effects of the epsilon-toxin.

Numerical Simulation of Vitiation Effects on a Hydrogen-Fueled Dual-Mode Scramjet

NASA Technical Reports Server (NTRS)

Vyas, Manan A.; Engblom, William A.; Georgiadis, Nicholas J.; Trefny, Charles J.; Bhagwandin, Vishal A.

2010-01-01

The Wind-US computational fluid dynamics (CFD) flow solver was used to simulate dual-mode direct-connect ramjet/scramjet engine flowpath tests conducted in the University of Virginia (UVa) Supersonic Combustion Facility (SCF). The objective was to develop a computational capability within Wind-US to aid current hypersonic research and provide insight to flow as well as chemistry details that are not resolved by instruments available. Computational results are compared with experimental data to validate the accuracy of the numerical modeling. These results include two fuel-off non-reacting and eight fuel-on reacting cases with different equivalence ratios, split between one set with a clean (non-vitiated) air supply and the other set with a vitiated air supply (12 percent H2O vapor). The Peters and Rogg hydrogen-air chemical kinetics model was selected for the scramjet simulations. A limited sensitivity study was done to investigate the choice of turbulence model and inviscid flux scheme and led to the selection of the k-epsilon model and Harten, Lax and van Leer (for contact waves) (HLLC) scheme for general use. Simulation results show reasonably good agreement with experimental data and the overall vitiation effects were captured.

Identification and embryonic expression of a new AP-2 transcription factor, AP-2 epsilon.

PubMed

Wang, Hao-Ven; Vaupel, Kristina; Buettner, Reinhard; Bosserhoff, Anja-Katrin; Moser, Markus

2004-09-01

AP-2 proteins comprise a family of highly related transcription factors, which are expressed during mouse embryogenesis in a variety of ectodermal, neuroectodermal, and mesenchymal tissues. AP-2 transcription factors were shown to be involved in morphogenesis of craniofacial, urogenital, neural crest-derived, and placental tissues. By means of a partial cDNA fragment identified during an expressed sequence tag search for AP-2 genes, we identified a fifth, previously unknown AP-2-related gene, AP-2 epsilon. AP-2 epsilon encodes an open reading frame of 434 amino acids, which reveals the typical modular structure of AP-2 transcription factors with highly conserved C-terminal DNA binding and dimerization domains. Although the N-terminally localized activation domain is less homologous, position and identity of amino acids essential for transcriptional transactivation are conserved. Reverse transcriptase-polymerase chain reaction analyses of murine embryos revealed AP-2 epsilon expression from gestational stage embryonic day 7.5 throughout all later embryonic stages until birth. Whole-mount in situ hybridization using a specific AP-2 epsilon cDNA fragment demonstrated that during embryogenesis, expression of AP-2 epsilon is mainly restricted to neural tissue, especially the midbrain, hindbrain, and olfactory bulb. This expression pattern was confirmed by immunohistochemistry with an AP-2 epsilon-specific antiserum. By using this antiserum, we could further localize AP-2 epsilon expression in a hypothalamic nucleus and the neuroepithelium of the vomeronasal organ, suggesting an important function of AP-2 epsilon for the development of the olfactory system.

Calculations of wall shear stress in harmonically oscillated turbulent pipe flow using a low-Reynolds-number {kappa}-{epsilon} model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ismael, J.O.; Cotton, M.A.

1996-03-01

The low-Reynolds-number {kappa}-{epsilon} turbulence model of Launder and Sharma is applied to the calculation of wall shear stress in spatially fully-developed turbulent pipe flow oscillated at small amplitudes. It is believed that the present study represents the first systematic evaluation of the turbulence closure under consideration over a wide range of frequency. Model results are well correlated in terms of the parameter {omega}{sup +} = {omega}{nu}/{bar U}{sub {tau}}{sup 2} at high frequencies, whereas at low frequencies there is an additional Reynolds number dependence. Comparison is made with the experimental data of Finnicum and Hanratty.

A COMBINED SPECTROSCOPIC AND PHOTOMETRIC STELLAR ACTIVITY STUDY OF EPSILON ERIDANI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Giguere, Matthew J.; Fischer, Debra A.; Zhang, Cyril X. Y.

2016-06-20

We present simultaneous ground-based radial velocity (RV) measurements and space-based photometric measurements of the young and active K dwarf Epsilon Eridani. These measurements provide a data set for exploring methods of identifying and ultimately distinguishing stellar photospheric velocities from Keplerian motion. We compare three methods we have used in exploring this data set: Dalmatian, an MCMC spot modeling code that fits photometric and RV measurements simultaneously; the FF′ method, which uses photometric measurements to predict the stellar activity signal in simultaneous RV measurements; and H α analysis. We show that our H α measurements are strongly correlated with the Microvariabilitymore » and Oscillations of STars telescope ( MOST ) photometry, which led to a promising new method based solely on the spectroscopic observations. This new method, which we refer to as the HH′ method, uses H α measurements as input into the FF′ model. While the Dalmatian spot modeling analysis and the FF′ method with MOST space-based photometry are currently more robust, the HH′ method only makes use of one of the thousands of stellar lines in the visible spectrum. By leveraging additional spectral activity indicators, we believe the HH′ method may prove quite useful in disentangling stellar signals.« less

The applicability of turbulence models to aerodynamic and propulsion flowfields at McDonnell-Douglas Aerospace

NASA Technical Reports Server (NTRS)

Kral, Linda D.; Ladd, John A.; Mani, Mori

1995-01-01

The objective of this viewgraph presentation is to evaluate turbulence models for integrated aircraft components such as the forebody, wing, inlet, diffuser, nozzle, and afterbody. The one-equation models have replaced the algebraic models as the baseline turbulence models. The Spalart-Allmaras one-equation model consistently performs better than the Baldwin-Barth model, particularly in the log-layer and free shear layers. Also, the Sparlart-Allmaras model is not grid dependent like the Baldwin-Barth model. No general turbulence model exists for all engineering applications. The Spalart-Allmaras one-equation model and the Chien k-epsilon models are the preferred turbulence models. Although the two-equation models often better predict the flow field, they may take from two to five times the CPU time. Future directions are in further benchmarking the Menter blended k-w/k-epsilon and algorithmic improvements to reduce CPU time of the two-equation model.

High interobserver variability in the assessment of epsilon waves: Implications for diagnosis of arrhythmogenic right ventricular cardiomyopathy/dysplasia.

PubMed

Platonov, Pyotr G; Calkins, Hugh; Hauer, Richard N; Corrado, Domenico; Svendsen, Jesper H; Wichter, Thomas; Biernacka, Elżbieta Katarzyna; Saguner, Ardan M; Te Riele, Anneline S J M; Zareba, Wojciech

2016-01-01

Revision of the Task Force diagnostic criteria for arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D) has increased their sensitivity for the diagnosis of early and familial forms of the disease. The epsilon wave is a major diagnostic criterion in the context of ARVC/D, which, however, remains not quantifiable and therefore may leave room for substantial subjective interpretation. The purpose of this study was to assess interobserver agreement in epsilon wave definition and epsilon wave importance for ARVC/D diagnosis. Electrocardiographic (ECG) tracings depicting leads V1, V2, and V3 collected from individuals evaluated for ARVC/D (n = 30) were given to panel members who were asked to respond to the question whether ECG patterns meet epsilon wave definition outlined by the Task Force diagnostic criteria. The prevalence and importance of epsilon waves for ARVC/D diagnosis were assessed in a pooled data set of patients with definite ARVC/D from European and American registries (n = 815). The number of ECG patterns identified as epsilon waves varied from 5 to 18 per reviewer (median 13 per reviewer). A unanimous agreement was reached for only 10 cases (33%), 2 of which qualified as epsilon waves and 8 as non-epsilon waves by all panel members. From a pooled data set, 106 patients reportedly had epsilon waves (13%). In 105 of 106 patients with epsilon waves (99%), exclusion of epsilon waves from the diagnostic score would not affect the "definite" diagnostic category. Interobserver variability in the assessment of epsilon waves is high; however, the impact of epsilon waves on ARVC/D diagnosis is negligibly low. The results urge to exercise caution in the assessment of epsilon waves, especially in patients who would not otherwise meet diagnostic criteria. Copyright © 2016 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

Outcomes and challenges of global high-resolution non-hydrostatic atmospheric simulations using the K computer

NASA Astrophysics Data System (ADS)

Satoh, Masaki; Tomita, Hirofumi; Yashiro, Hisashi; Kajikawa, Yoshiyuki; Miyamoto, Yoshiaki; Yamaura, Tsuyoshi; Miyakawa, Tomoki; Nakano, Masuo; Kodama, Chihiro; Noda, Akira T.; Nasuno, Tomoe; Yamada, Yohei; Fukutomi, Yoshiki

2017-12-01

This article reviews the major outcomes of a 5-year (2011-2016) project using the K computer to perform global numerical atmospheric simulations based on the non-hydrostatic icosahedral atmospheric model (NICAM). The K computer was made available to the public in September 2012 and was used as a primary resource for Japan's Strategic Programs for Innovative Research (SPIRE), an initiative to investigate five strategic research areas; the NICAM project fell under the research area of climate and weather simulation sciences. Combining NICAM with high-performance computing has created new opportunities in three areas of research: (1) higher resolution global simulations that produce more realistic representations of convective systems, (2) multi-member ensemble simulations that are able to perform extended-range forecasts 10-30 days in advance, and (3) multi-decadal simulations for climatology and variability. Before the K computer era, NICAM was used to demonstrate realistic simulations of intra-seasonal oscillations including the Madden-Julian oscillation (MJO), merely as a case study approach. Thanks to the big leap in computational performance of the K computer, we could greatly increase the number of cases of MJO events for numerical simulations, in addition to integrating time and horizontal resolution. We conclude that the high-resolution global non-hydrostatic model, as used in this five-year project, improves the ability to forecast intra-seasonal oscillations and associated tropical cyclogenesis compared with that of the relatively coarser operational models currently in use. The impacts of the sub-kilometer resolution simulation and the multi-decadal simulations using NICAM are also reviewed.

Dynamic Simulation of a Periodic 10 K Sorption Cryocooler

NASA Technical Reports Server (NTRS)

Bhandari, P.; Rodriguez, J.; Bard, S.; Wade, L.

1994-01-01

A transient thermal simulation model has been developed to simulate the dynamic performance of a multiple-stage 10 K sorption cryocooler for spacecraft sensor cooling applications that require periodic quick-cooldown (under 2 minutes) , negligible vibration, low power consumption, and long life (5 to 10 years). The model was specifically designed to represent the Brilliant Eyes Ten-Kelvin Sorption Cryocooler Experiment (BETSCE), but it can be adapted to represent other sorption cryocooler systems as well. The model simulates the heat transfer, mass transfer, and thermodynamic processes in the cryostat and the sorbent beds for the entire refrigeration cycle, and includes the transient effects of variable hydrogen supply pressures due to expansion and overflow of hydrogen during the cooldown operation. The paper describes model limitations and simplifying assumptions, with estimates of errors induced by them, and presents comparisons of performance predictions with ground experiments. An important benefit of the model is its ability to predict performance sensitivities to variations of key design and operational parameters. The insights thus obtained are expected to lead to higher efficiencies and lower weights for future designs.

Photonic doping of epsilon-near-zero media

NASA Astrophysics Data System (ADS)

Liberal, Iñigo; Mahmoud, Ahmed M.; Li, Yue; Edwards, Brian; Engheta, Nader

2017-03-01

Doping a semiconductor with foreign atoms enables the control of its electrical and optical properties. We transplant the concept of doping to macroscopic photonics, demonstrating that two-dimensional dielectric particles immersed in a two-dimensional epsilon-near-zero medium act as dopants that modify the medium’s effective permeability while keeping its effective permittivity near zero, independently of their positions within the host. The response of a large body can be tuned with a single impurity, including cases such as engineering perfect magnetic conductor and epsilon-and-mu-near-zero media with nonmagnetic constituents. This effect is experimentally demonstrated at microwave frequencies via the observation of geometry-independent tunneling. This methodology might provide a new pathway for engineering electromagnetic metamaterials and reconfigurable optical systems.

Improvement of AEP Predictions Using Diurnal CFD Modelling with Site-Specific Stability Weightings Provided from Mesoscale Simulation

NASA Astrophysics Data System (ADS)

Hristov, Y.; Oxley, G.; Žagar, M.

2014-06-01

The Bolund measurement campaign, performed by Danish Technical University (DTU) Wind Energy Department (also known as RISØ), provided significant insight into wind flow modeling over complex terrain. In the blind comparison study several modelling solutions were submitted with the vast majority being steady-state Computational Fluid Dynamics (CFD) approaches with two equation k-epsilon turbulence closure. This approach yielded the most accurate results, and was identified as the state-of-the-art tool for wind turbine generator (WTG) micro-siting. Based on the findings from Bolund, further comparison between CFD and field measurement data has been deemed essential in order to improve simulation accuracy for turbine load and long-term Annual Energy Production (AEP) estimations. Vestas Wind Systems A/S is a major WTG original equipment manufacturer (OEM) with an installed base of over 60GW in over 70 countries accounting for 19% of the global installed base. The Vestas Performance and Diagnostic Centre (VPDC) provides online live data to more than 47GW of these turbines allowing a comprehensive comparison between modelled and real-world energy production data. In previous studies, multiple sites have been simulated with a steady neutral CFD formulation for the atmospheric surface layer (ASL), and wind resource (RSF) files have been generated as a base for long-term AEP predictions showing significant improvement over predictions performed with the industry standard linear WAsP tool. In this study, further improvements to the wind resource file generation with CFD are examined using an unsteady diurnal cycle approach with a full atmospheric boundary layer (ABL) formulation, with the unique stratifications throughout the cycle weighted according to mesoscale simulated sectorwise stability frequencies.

Numerical simulation of temperature field in K9 glass irradiated by ultraviolet pulse laser

NASA Astrophysics Data System (ADS)

Wang, Xi; Fang, Xiaodong

2015-10-01

The optical component of photoelectric system was easy to be damaged by irradiation of high power pulse laser, so the effect of high power pulse laser irradiation on K9 glass was researched. A thermodynamic model of K9 glass irradiated by ultraviolet pulse laser was established using the finite element software ANSYS. The article analyzed some key problems in simulation process of ultraviolet pulse laser damage of K9 glass based on ANSYS from the finite element models foundation, meshing, loading of pulse laser, setting initial conditions and boundary conditions and setting the thermal physical parameters of material. The finite element method (FEM) model was established and a numerical analysis was performed to calculate temperature field in K9 glass irradiated by ultraviolet pulse laser. The simulation results showed that the temperature of irradiation area exceeded the melting point of K9 glass, while the incident laser energy was low. The thermal damage dominated in the damage mechanism of K9 glass, the melting phenomenon should be much more distinct.

Dielectric properties of proteins from simulation: the effects of solvent, ligands, pH, and temperature.

PubMed

Pitera, J W; Falta, M; van Gunsteren, W F

2001-06-01

We have used a standard Fröhlich-Kirkwood dipole moment fluctuation model to calculate the static dielectric permittivity, epsilon(0), for four different proteins, each of which was simulated under at least two different conditions of pH, temperature, solvation, or ligand binding. For the range of proteins and conditions studied, we calculate values for epsilon(0) between 15 and 40. Our results show, in agreement with prior work, that the behavior of charged residues is the primary determinant of the effective permittivity. Furthermore, only environmental changes that alter the properties of charged residues exert a significant effect on epsilon. In contrast, buried water molecules or ligands have little or no effect on protein dielectric properties.

Cellular vacuolation induced by Clostridium perfringens epsilon-toxin.

PubMed

Nagahama, Masahiro; Itohayashi, Yukari; Hara, Hideki; Higashihara, Masahiro; Fukatani, Yusuke; Takagishi, Teruhisa; Oda, Masataka; Kobayashi, Keiko; Nakagawa, Ichiro; Sakurai, Jun

2011-09-01

The epsilon-toxin of Clostridium perfringens forms a heptamer in the membranes of Madin-Darby canine kidney cells, leading to cell death. Here, we report that it caused the vacuolation of Madin-Darby canine kidney cells. The toxin induced vacuolation in a dose-dependent and time-dependent manner. The monomer of the toxin formed oligomers on lipid rafts in membranes of the cells. Methyl-β-cyclodextrin and poly(ethylene glycol) 4000 inhibited the vacuolation. Epsilon-toxin was internalized into the cells. Confocal microscopy revealed that the internalized toxin was transported from early endosomes (early endosome antigen 1 staining) to late endosomes and lysosomes (lysosomal-associated membrane protein 2 staining) and then distributed to the membranes of vacuoles. Furthermore, the vacuolation was inhibited by bafilomycin A1, a V-type ATPase inhibitor, and colchicine and nocodazole, microtubule-depolymerizing agents. The early endosomal marker green fluorescent protein-Rab5 and early endosome antigen 1 did not localize to vacuolar membranes. In contrast, the vacuolar membranes were specifically stained by the late endosomal and lysosomal marker green fluorescent protein-Rab7 and lysosomal-associated membrane protein 2. The vacuoles in the toxin-treated cells were stained with LysoTracker Red DND-99, a marker for late endosomes and lysosomes. A dominant negative mutant of Rab7 prevented the vacuolization, whereas a mutant form of Rab5 was less effective. These results demonstrate, for the first time, that: (a) oligomers of epsilon-toxin formed in lipid rafts are endocytosed; and (b) the vacuoles originating from late endosomes and lysosomes are formed by an oligomer of epsilon-toxin. © 2011 The Authors Journal compilation © 2011 FEBS.

Pharmacokinetics of Epsilon-Aminocaproic Acid in Neonates

PubMed Central

Eaton, Michael P.; Alfieris, George M; Sweeney, Dawn M; Angona, Ronald E; Cholette, Jill M; Venuto, Charles; Anderson, Brian

2016-01-01

Background Antifibrinolytic medications such as epsilon-aminocaproic acid (EACA) are used in pediatric heart surgery to decrease surgical bleeding and transfusion. Dosing schemes for neonates are often based on adult regimens, or are simply empiric, in part due to the lack of neonatal pharmacokinetic information. We sought to determine the pharmacokinetics of EACA in neonates undergoing cardiac surgery and to devise a dosing regimen for this population. Methods Ten neonates undergoing cardiac surgery with cardiopulmonary bypass were given EACA according to standard practice, and blood was drawn at 10 time points to determine drug concentrations. Time-concentration profiles were analyzed using nonlinear mixed effects models. Parameter estimates (standardized to a 70 kg person) were used to develop a dosing regimen intended to maintain a target concentration shown to inhibit fibrinolysis in neonatal plasma (50 mg/L). Results Pharmacokinetics were described using a two compartment model plus an additional compartment for the cardiopulmonary bypass pump. First order elimination was described with a clearance of 5.07 L/h*(WT/70) 0.75. Simulation showed a dosing regimen with a loading dose of 40 mg/kg, and an infusion of 30 mg/kg/h, with a pump prime concentration of 100 mg/L maintained plasma concentrations above 50 mg/L in 90% of neonates during cardiopulmonary bypass surgery. Conclusions EACA clearance, expressed using allometry, is reduced in neonates compared to older children and adults. Loading dose and infusion dose are approximately half those required in children and adults. PMID:25723765

A near-wall four-equation turbulence model for compressible boundary layers

NASA Technical Reports Server (NTRS)

Sommer, T. P.; So, R. M. C.; Zhang, H. S.

1992-01-01

A near-wall four-equation turbulence model is developed for the calculation of high-speed compressible turbulent boundary layers. The four equations used are the k-epsilon equations and the theta(exp 2)-epsilon(sub theta) equations. These equations are used to define the turbulent diffusivities for momentum and heat fluxes, thus allowing the assumption of dynamic similarity between momentum and heat transport to be relaxed. The Favre-averaged equations of motion are solved in conjunction with the four transport equations. Calculations are compared with measurements and with another model's predictions where the assumption of the constant turbulent Prandtl number is invoked. Compressible flat plate turbulent boundary layers with both adiabatic and constant temperature wall boundary conditions are considered. Results for the range of low Mach numbers and temperature ratios investigated are essentially the same as those obtained using an identical near-wall k-epsilon model. In general, the numerical predictions are in very good agreement with measurements and there are significant improvements in the predictions of mean flow properties at high Mach numbers.

Association of the apolipoprotein E {epsilon}4 allele with clinical subtypes of autopsy-confirmed Alzheimer`s Disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zubenko, G.S.; Stiffler, S.; Kopp, U.

1994-09-15

Consistent with previous reports, we observed a significant association of the APOE {epsilon}4 allele with Alzheimer`s Disease (AD) in a series of 91 autopsy-confirmed cases. The {epsilon}4 allele frequency was higher in cases with a family history of AD-like dementia (0.54 {+-} 0.07), although the {epsilon}4 allele frequency in the AD cases with a negative family history (0.38 {+-} 0.05) remained significantly greater than that for the non-AD control group (0.13 {+-} 0.03). A similar increase in {epsilon}4 allele frequency (0.54 {+-} 0.07) was observed in the AD cases with amyloid angiopathy, compared to those who did not have amyloidmore » angiopathy (0.35 {+-} 0.04). Contrary to previous reports, no effect of the dosage of the {epsilon}4 allele was found on the age of onset of dementia among the AD cases and, contrary to reports suggesting an association of {epsilon}4 and atherosclerosis, the {epsilon}4 allele frequency was similar in cases with or without concurrent brain infarcts. Modest but consistent correlations were observed between the dosage of {epsilon}4 alleles and the cortical density of senile plaques, but not neurofibrillary tangles. The last finding suggests that the pathogenic events mediated by the {epsilon}4 allele may be more directly involved in the formation of senile plaques, the identifying lesions in AD, than neurofibrillary tangles. A robust association of both the presence of an {epsilon}4 allele and a family history of AD-like dementia with concurrent amyloid angiopathy occurred within our sample of AD cases. This association arose from an interaction of the {epsilon}4 allele with a separate familial factor for which a family history of dementia served as a surrogate. These results suggest that amyloid angiopathy may be a common or central feature of a form of familial AD that is associated with the transmission of the APOE {epsilon}4 allele. 22 refs., 2 figs., 5 tabs.« less

Clostridium perfringens epsilon toxin rapidly decreases membrane barrier permeability of polarized MDCK cells.

PubMed

Petit, Laetitia; Gibert, Maryse; Gourch, Abdelkader; Bens, Marcelle; Vandewalle, Alain; Popoff, Michel R

2003-03-01

Epsilon toxin is produced by Clostridium perfringens types B and D which are responsible for fatal intestinal diseases in animals. The main biological activity of epsilon toxin is the production of oedema in various organs. We have previously found that epsilon toxin forms a large membrane complex in MDCK cells which is not internalized into cell, and induces cell volume enlargement and loss of cell viability (Petit, L., Gibert, M., Gillet, D., Laurent-Winter, C., Boquet, P., Popoff, M. R. (1997) J Bacteriol 179, 6480-6487). Here, we show that epsilon toxin is very potent to decrease the trans-epithelial electrical resistance of polarized MDCK cells grown on filters without altering the organization of the junctional complexes. The dose-dependent decrease in trans-epithelial electrical resistance, more marked when the toxin was applied to the apical side than to the basal side of MDCK cells, was associated with a moderate increase of the paracellular permeability to low-molecular-weight compounds but not to macromolecules. Epsilon toxin probably acts by forming large membrane pores which permit the flux of ions and other molecules such as the entry of propidium iodide and finally to the loss of cell viability.

IKK{epsilon} modulates RSV-induced NF-{kappa}B-dependent gene transcription

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bao Xiaoyong; Indukuri, Hemalatha; Liu Tianshuang

2010-12-20

Respiratory syncytial virus (RSV), a negative-strand RNA virus, is the most common cause of epidemic respiratory disease in infants and young children. RSV infection of airway epithelial cells induces the expression of immune/inflammatory genes through the activation of a subset of transcription factors, including Nuclear Factor-{kappa}B (NF-{kappa}B). In this study we have investigated the role of the non canonical I{kappa}B kinase (IKK){epsilon} in modulating RSV-induced NF-{kappa}B activation. Our results show that inhibition of IKK{epsilon} activation results in significant impairment of viral-induced NF-{kappa}B-dependent gene expression, through a reduction in NF-{kappa}B transcriptional activity, without changes in nuclear translocation or DNA-binding activity. Absencemore » of IKK{epsilon} results in a significant decrease of RSV-induced NF-{kappa}B phosphorylation on serine 536, a post-translational modification important for RSV-induced NF-{kappa}B-dependent gene expression, known to regulate NF-{kappa}B transcriptional activity without affecting nuclear translocation. This study identifies a novel mechanism by which IKK{epsilon} regulates viral-induced cellular signaling.« less

CONSTRAINTS FROM ASYMMETRIC HEATING: INVESTIGATING THE EPSILON AURIGAE DISK

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pearson, Richard L. III; Stencel, Robert E., E-mail: richard.pearson@du.edu, E-mail: robert.stencel@du.edu

2015-01-01

Epsilon Aurigae is a long-period eclipsing binary that likely contains an F0Ia star and a circumstellar disk enshrouding a hidden companion, assumed to be a main-sequence B star. High uncertainty in its parallax has kept the evolutionary status of the system in question and, hence, the true nature of each component. This unknown, as well as the absence of solid state spectral features in the infrared, requires an investigation of a wide parameter space by means of both analytic and Monte Carlo radiative transfer (MCRT) methods. The first MCRT models of epsilon Aurigae that include all three system components aremore » presented here. We seek additional system parameter constraints by melding analytic approximations with MCRT outputs (e.g., dust temperatures) on a first-order level. The MCRT models investigate the effects of various parameters on the disk-edge temperatures; these include two distances, three particle size distributions, three compositions, and two disk masses, resulting in 36 independent models. Specifically, the MCRT temperatures permit analytic calculations of effective heating and cooling curves along the disk edge. These are used to calculate representative observed fluxes and corresponding temperatures. This novel application of thermal properties provides the basis for utilization of other binary systems containing disks. We find degeneracies in the model fits for the various parameter sets. However, the results show a preference for a carbon disk with particle size distributions ≥10 μm. Additionally, a linear correlation between the MCRT noon and basal temperatures serves as a tool for effectively eliminating portions of the parameter space.« less

The efficacy and safety of epsilon-aminocaproic acid treatment in patients with cirrhosis and hyperfibrinolysis.

PubMed

Gunawan, B; Runyon, B

2006-01-01

Patients with decompensated cirrhosis are at risk for hyperfibrinolysis; this is potentially fatal. epsilon-aminocaproic acid has been used to treat patients with hyperfibrinolysis; however, the data about its benefit in the setting of cirrhosis are minimal. To analyse the efficacy of epsilon-aminocaproic acid and its safety in cirrhotic patients with hyperfibrinolysis. All patients with an abnormal euglobin lysis time who were admitted to Rancho Los Amigos Medical Center from 1 January 2001 to 31 December 2002 were included in the study. Their medical records were reviewed and analysed. There were 60 cirrhotic patients with shortened euglobin lysis time. Fifty-two patients received epsilon-aminocaproic acid. Of the 52 patients, seven had one or more bleeding episodes with the subcutaneous or soft tissue bleeding as the most common indication for epsilon-aminocaproic acid use. Of the 37 patients, 34 (92%) had improvement or resolution of their bleeding. Only two (3%) patients had epsilon-aminocaproic acid treatment discontinued because of minor side effects, rash and lightheadedness. There were no thromboembolic complications of treatment. epsilon-aminocaproic acid was found to be effective and safe for treatment of hyperfibrinolysis in patients with cirrhosis.

Thermal Optical Properties of Lunar Dust Simulants and Their Constituents

NASA Technical Reports Server (NTRS)

Gaier, James R.; Ellis, Shaneise; Hanks, Nichole

2011-01-01

The total reflectance spectra of lunar simulant dusts (less than 20 micrometer particles) were measured in order to determine their integrated solar absorptance (alpha) and their thermal emittance (e) for the purpose of analyzing the effect of dust on the performance of thermal control surfaces. All of the simulants except one had a wavelength-dependant reflectivity (p(lambda)) near 0.10 over the wavelength range of 8 to 25 micrometers, and so are highly emitting at room temperature and lower. The 300 K emittance (epsilon) of all the lunar simulants except one ranged from 0.78 to 0.92. The exception was Minnesota Lunar Simulant 1 (MLS-1), which has little or no glassy component. In all cases the epsilon was lower for the less 20 micrometer particles than for larger particles reported earlier. There was considerably more variation in the lunar simulant reflectance in the solar spectral range (250 to 2500 nanometers) than in the thermal infrared. As expected, the lunar highlands simulants were more reflective in this wavelength range than the lunar mare simulants. The integrated solar absorptance (alpha) of the simulants ranged from 0.39 to 0.75. This is lower than values reported earlier for larger particles of the same simulants (0.41 to 0.82), and for representative mare and highlands lunar soils (0.74 to 0.91). Since the alpha of some mare simulants more closely matched that of highlands lunar soils, it is recommended that and values be the criteria for choosing a simulant for assessing the effects of dust on thermal control surfaces, rather than whether a simulant has been formulated as a highlands or a mare simulant.

Apolipoprotein E epsilon4 influences on episodic recall and brain structures in aging pilots.

PubMed

Adamson, Maheen M; Landy, Kelly M; Duong, Susan; Fox-Bosetti, Sabrina; Ashford, J Wesson; Murphy, Greer M; Weiner, Michael; Taylor, Joy L

2010-06-01

The apolipoprotein (APOE) epsilon4 allele is associated with cognitive deficits and hippocampal atrophy in nondemented middle-aged and older adults. It is not known to what extent this genetic risk factor for Alzheimer's disease (AD) impacts performance in late middle-aged and older workers in cognitively demanding occupations. This cross-sectional analysis examines brain-cognitive-genetic relationships in actively flying general aviation pilots, half of whom are APOE epsilon4 carriers. Fifty pilots were studied with structural MRI and memory tasks. Average visual paired associate memory recall performance was lower in APOE epsilon4 carriers than non-carriers. Memory performance correlated positively with hippocampal volume, but no structural differences were found in hippocampal or frontal volumes with respect to APOE epsilon4 allele. These results were evident in healthy professionals without any presenting memory problems and without selection for a family history of AD. These findings point to basic memory testing as a sensitive tool for detecting APOE epsilon4-related influences on memory in aging workers. Published by Elsevier Inc.

Laminar-to-turbulence and relaminarization zones detection by simulation of low Reynolds number turbulent blood flow in large stenosed arteries.

PubMed

Tabe, Reza; Ghalichi, Farzan; Hossainpour, Siamak; Ghasemzadeh, Kamran

2016-08-12

Laminar, turbulent, transitional, or combine areas of all three types of viscous flow can occur downstream of a stenosis depending upon the Reynolds number and constriction shape parameter. Neither laminar flow solver nor turbulent models for instance the k-ω (k-omega), k-ε (k-epsilon), RANS or LES are opportune for this type of flow. In the present study attention has been focused vigorously on the effect of the constriction in the flow field with a unique way. It means that the laminar solver was employed from entry up to the beginning of the turbulent shear flow. The turbulent model (k-ω SST Transitional Flows) was utilized from starting of turbulence to relaminarization zone while the laminar model was applied again with onset of the relaminarization district. Stenotic flows, with 50 and 75% cross-sectional area, were simulated at Reynolds numbers range from 500 to 2000 employing FLUENT (v6.3.17). The flow was considered to be steady, axisymmetric, and incompressible. Achieving results were reported as axial velocity, disturbance velocity, wall shear stress and the outcomes were compared with previously experimental and CFD computations. The analogy of axial velocity profiles shows that they are in acceptable compliance with the empirical data. As well as disturbance velocity and wall shear stresses anticipated by this new approach, part by part simulation, are reasonably valid with the acceptable experimental studies.

Material model measurements and predictions for a random pore poly(epsilon-caprolactone) scaffold.

PubMed

Quinn, T P; Oreskovic, T L; Landis, F A; Washburn, N R

2007-07-01

We investigated material models for a polymeric scaffold used for bone. The material was made by co-extruding poly(epsilon-caprolactone) (PCL), a biodegradable polyester, and poly(ethylene oxide) (PEO). The water soluble PEO was removed resulting in a porous scaffold. The stress-strain curve in compression was fit with a phenomenological model in hyperbolic form. This material model will be useful for designers for quasi-static analysis as it provides a simple form that can easily be used in finite element models. The ASTM D-1621 standard recommends using a secant modulus based on 10% strain. The resulting modulus has a smaller scatter in its value compared with the coefficients of the hyperbolic model, and it is therefore easier to compare differences in material processing and ensure quality of the scaffold. A prediction of the small-strain elastic modulus was constructed from images of the microstructure. Each pixel of the micrographs was represented with a brick finite element and assigned the Young's modulus of bulk PCL or a value of 0 for a pore. A compressive strain was imposed on the model and the resulting stresses were calculated. The elastic constants of the scaffold were then computed with Hooke's law for a linear-elastic isotropic material. The model was able to predict the small-strain elastic modulus measured in the experiments to within one standard deviation. Thus, by knowing the microstructure of the scaffold, its bulk properties can be predicted from the material properties of the constituents. Copyright 2006 Wiley Periodicals, Inc.

A parametric simulation of solar chimney power plant

NASA Astrophysics Data System (ADS)

Beng Hooi, Lim; Kannan Thangavelu, Saravana

2018-01-01

The strong solar radiation, continuous supplies of sunlight and environmental friendly factors have made the solar chimney power plant becoming highly feasible to build in Malaysia. Solar chimney power plant produces upward buoyancy force through the greenhouse effect. Numerical simulation was performed on the model of a solar chimney power plant using the ANSYS Fluent software by applying standard k-epsilon turbulence model and discrete ordinates (DO) radiation model to solve the relevant equations. A parametric study was carried out to evaluate the performance of solar chimney power plant, which focused on the temperature rise in the collector, air velocity at the chimney base, and pressure drop inside the chimney were based on the results of temperature, velocity, and static pressure distributions. The results demonstrate reliability by comparing a model with the experimental data of Manzanares Spanish prototype. Based on the numerical results, power capacity and efficiency were analysed theoretically. Results indicate that a stronger solar radiation and larger prototype will improve the performance of solar chimney power plant.

Apolipoprotein E type epsilon4 allele, heritability and age at onset in twins with Alzheimer disease and vascular dementia.

PubMed

Bergem, A L; Lannfelt, L

1997-11-01

The apolipoprotein E (APOE) epsilon4 allele is a risk factor in Alzheimer disease (AD), but not in vascular dementia (VaD). We have investigated whether the epsilon4 allele is more common in twin pairs concordant for AD, compared with those discordant for AD, and whether the epsilon4 allele is more common in AD twins than in VaD twins. In addition, we have investigated the relationship of the epsilon4 allele and the age at onset in AD and VaD. APOE genotype was analysed in 29 senile demented twin pairs. The epsilon4 allele was associated with AD and not with VaD. However, there was no difference in the frequency of the APOE epsilon4 allele in concordant (33.3%) and discordant (31.3%) AD dizygotic twin pairs. Age at onset in AD was significantly lower in epsilon4 homozygotes than in individuals with one or no copies of epsilon4 (62.4 vs. 73.5, p<0.01). In concordant AD twin pairs, the epsilon4 allele frequency was somewhat higher in the twins with earlier onset (41.7% vs. 25%), but the difference was not statistically significant. In the VaD group the age at onset was not significantly different between individuals with or without epsilon4 in their genotypes.

An application of a two-equation model of turbulence to three-dimensional chemically reacting flows

NASA Technical Reports Server (NTRS)

Lee, J.

1994-01-01

A numerical study of three dimensional chemically reacting and non-reacting flowfields is conducted using a two-equation model of turbulence. A generalized flow solver using an implicit Lower-Upper (LU) diagonal decomposition numerical technique and finite-rate chemistry has been coupled with a low-Reynolds number two-equation model of turbulence. This flow solver is then used to study chemically reacting turbulent supersonic flows inside combustors with synergetic fuel injectors. The reacting and non-reacting turbulent combustor solutions obtained are compared with zero-equation turbulence model solutions and with available experimental data. The hydrogen-air chemistry is modeled using a nine-species/eighteen reaction model. A low-Reynolds number k-epsilon model was used to model the effect of turbulence because, in general, the low-Reynolds number k-epsilon models are easier to implement numerically and are far more general than algebraic models. However, low-Reynolds number k-epsilon models require a much finer near-wall grid resolution than high-Reynolds number models to resolve accurately the near-wall physics. This is especially true in complex flowfields, where the stiff nature of the near-wall turbulence must be resolved. Therefore, the limitations imposed by the near-wall characteristics and compressible model corrections need to be evaluated further. The gradient-diffusion hypothesis is used to model the effects of turbulence on the mass diffusion process. The influence of this low-Reynolds number turbulence model on the reacting flowfield predictions was studied parametrically.

3D Numerical Simulation of Turbulent Buoyant Flow and Heat Transport in a Curved Open Channel

USDA-ARS?s Scientific Manuscript database

A three-dimensional buoyancy-extended version of kappa-epsilon turbulence model was developed for simulating the turbulent flow and heat transport in a curved open channel. The density- induced buoyant force was included in the model, and the influence of temperature stratification on flow field was...

Rapid association of protein kinase C-epsilon with insulin granules is essential for insulin exocytosis.

PubMed

Mendez, Carlos F; Leibiger, Ingo B; Leibiger, Barbara; Høy, Marianne; Gromada, Jesper; Berggren, Per-Olof; Bertorello, Alejandro M

2003-11-07

Glucose-dependent exocytosis of insulin requires activation of protein kinase C (PKC). However, because of the great variety of isoforms and their ubiquitous distribution within the beta-cell, it is difficult to predict the importance of a particular isoform and its mode of action. Previous data revealed that two PKC isoforms (alpha and epsilon) translocate to membranes in response to glucose (Zaitzev, S. V., Efendic, S., Arkhammar, P., Bertorello, A. M., and Berggren, P. O. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 9712-9716). Using confocal microscopy, we have now established that in response to glucose, PKC-epsilon but not PKC-alpha associates with insulin granules and that green fluorescent protein-tagged PKC-epsilon changes its distribution within the cell periphery upon stimulation of beta-cells with glucose. Definite evidence of PKC-epsilon requirement during insulin granule exocytosis was obtained by using a dominant negative mutant of this isoform. The presence of this mutant abolished glucose-induced insulin secretion, whereas transient expression of the wild-type PKC-epsilon led to a significant increase in insulin exocytosis. These results suggest that association of PKC-epsilon with insulin granule membranes represents an important component of the secretory network because it is essential for insulin exocytosis in response to glucose.

Discriminating dark energy models by using the Statefinder hierarchy and the growth rate of matter perturbations

NASA Astrophysics Data System (ADS)

Li, Jun; Yang, Rongjia; Chen, Bohai

2014-12-01

We apply the Statefinder hierarchy and the growth rate of matter perturbations to discriminate modified Chaplygin gas (MCG), generalized Chaplygin gas (GCG), superfluid Chaplygin gas (SCG), purely kinetic k-essence (PKK), and ΛCDM model. We plot the evolutional trajectories of these models in the Statefinder plane and in the composite diagnostic plane. We find that GCG, MCG, SCG, PKK, and ΛCDM can be distinguished well from each other at the present epoch by using the composite diagnostic {epsilon(z), S(1)5}. Using other combinations, such as {S(1)3, S(1)4}, {S(1)3, S5}, {epsilon(z), S(1)3}, and {epsilon(z), S4}, some of these five dark energy models cannot be distinguished.

Epsilon-toxin plasmids of Clostridium perfringens type D are conjugative.

PubMed

Hughes, Meredith L; Poon, Rachael; Adams, Vicki; Sayeed, Sameera; Saputo, Juliann; Uzal, Francisco A; McClane, Bruce A; Rood, Julian I

2007-11-01

Isolates of Clostridium perfringens type D produce the potent epsilon-toxin (a CDC/U.S. Department of Agriculture overlap class B select agent) and are responsible for several economically significant enterotoxemias of domestic livestock. It is well established that the epsilon-toxin structural gene, etx, occurs on large plasmids. We show here that at least two of these plasmids are conjugative. The etx gene on these plasmids was insertionally inactivated using a chloramphenicol resistance cassette to phenotypically tag the plasmid. High-frequency conjugative transfer of the tagged plasmids into the C. perfringens type A strain JIR325 was demonstrated, and the resultant transconjugants were shown to act as donors in subsequent mating experiments. We also demonstrated the transfer of "unmarked" native epsilon-toxin plasmids into strain JIR325 by exploiting the high transfer frequency. The transconjugants isolated in these experiments expressed functional epsilon-toxin since their supernatants had cytopathic effects on MDCK cells and were toxic in mice. Using the widely accepted multiplex PCR approach for toxin genotyping, these type A-derived transconjugants were genotypically type D. These findings have significant implications for the C. perfringens typing system since it is based on the toxin profile of each strain. Our study demonstrated the fluid nature of the toxinotypes and their dependence upon the presence or absence of toxin plasmids, some of which have for the first time been shown to be conjugative.

Deep L'- and M-band Imaging for Planets around Vega and epsilon Eridani

NASA Astrophysics Data System (ADS)

Heinze, A. N.; Hinz, Philip M.; Kenworthy, Matthew; Miller, Douglas; Sivanandam, Suresh

2008-11-01

We have obtained deep adaptive optics (AO) images of Vega and epsilon Eri to search for planetary mass companions. We observed at the MMT in the L' (3.8 μm) and M (4.8 μm) bands using Clio, a recently commissioned imager optimized for these wavelengths. Observing at these long wavelengths represents a departure from the H band (1.65 μm) more commonly used for AO imaging searches for extrasolar planets. The long wavelengths offer better predicted planet/star flux ratios and cleaner (higher Strehl) AO images at the cost of lower diffraction-limited resolution and higher sky background. We have not detected any planets or planet candidates around Vega or epsilon Eri. We report the sensitivities obtained around both stars, which correspond to upper limits on any planetary companions which may exist. The sensitivities of our L'- and M-band observations are comparable to those of the best H-regime observations of these stars. For epsilon Eri, our M-band observations deliver considerably better sensitivity to close-in planets than any previously published results, and we show that the M band is by far the best wavelength choice for attempts at ground-based AO imaging of the known planet epsilon Eri b. The Clio camera itself, with MMTAO, may be capable of detecting epsilon Eri b at its 2010 apastron, given a multinight observing campaign. Clio appears to be the only currently existing AO imager that has a realistic possibility of detecting epsilon Eri b. Observations reported here were obtained at the MMT Observatory, a joint facility of the University of Arizona and the Smithsonian Institution.

Adaptation of the TH Epsilon Mu formalism for the analysis of the equivalence principle in the presence of the weak and electroweak interaction

NASA Technical Reports Server (NTRS)

Fennelly, A. J.

1981-01-01

The TH epsilon mu formalism, used in analyzing equivalence principle experiments of metric and nonmetric gravity theories, is adapted to the description of the electroweak interaction using the Weinberg-Salam unified SU(2) x U(1) model. The use of the TH epsilon mu formalism is thereby extended to the weak interactions, showing how the gravitational field affects W sub mu (+ or -1) and Z sub mu (0) boson propagation and the rates of interactions mediated by them. The possibility of a similar extension to the strong interactions via SU(5) grand unified theories is briefly discussed. Also, using the effects of the potentials on the baryon and lepton wave functions, the effects of gravity on transition mediated in high-A atoms which are electromagnetically forbidden. Three possible experiments to test the equivalence principle in the presence of the weak interactions, which are technologically feasible, are then briefly outline: (1) K-capture by the FE nucleus (counting the emitted X-ray); (2) forbidden absorption transitions in high-A atoms' vapor; and (3) counting the relative Beta-decay rates in a suitable alpha-beta decay chain, assuming the strong interactions obey the equivalence principle.

Clostridium perfringens epsilon toxin increases the small intestinal permeability in mice and rats.

PubMed

Goldstein, Jorge; Morris, Winston E; Loidl, César Fabián; Tironi-Farinati, Carla; Tironi-Farinatti, Carla; McClane, Bruce A; Uzal, Francisco A; Fernandez Miyakawa, Mariano E

2009-09-18

Epsilon toxin is a potent neurotoxin produced by Clostridium perfringens types B and D, an anaerobic bacterium that causes enterotoxaemia in ruminants. In the affected animal, it causes oedema of the lungs and brain by damaging the endothelial cells, inducing physiological and morphological changes. Although it is believed to compromise the intestinal barrier, thus entering the gut vasculature, little is known about the mechanism underlying this process. This study characterizes the effects of epsilon toxin on fluid transport and bioelectrical parameters in the small intestine of mice and rats. The enteropooling and the intestinal loop tests, together with the single-pass perfusion assay and in vitro and ex vivo analysis in Ussing's chamber, were all used in combination with histological and ultrastructural analysis of mice and rat small intestine, challenged with or without C. perfringens epsilon toxin. Luminal epsilon toxin induced a time and concentration dependent intestinal fluid accumulation and fall of the transepithelial resistance. Although no evident histological changes were observed, opening of the mucosa tight junction in combination with apoptotic changes in the lamina propria were seen with transmission electron microscopy. These results indicate that C. perfringens epsilon toxin alters the intestinal permeability, predominantly by opening the mucosa tight junction, increasing its permeability to macromolecules, and inducing further degenerative changes in the lamina propria of the bowel.

Allele doses of apolipoprotein E type {epsilon}4 in sporadic late-onset Alzheimer`s disease

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lucotte, G.; Aouizerate, A.; Gerard, N.

1995-12-18

Apoliprotein E, type {epsilon}4 allele (ApoE-{epsilon}4) is associated with late-onset sporadic Alzheimer`s disease (AD). We have found that the cumulative probability of remaining unaffected over time decreases for each dose of ApoE-{epsilon}4 in sporadic, late-onset French AD. The effect of genotypes on age at onset of AD was analyzed using the product limit method, to compare unaffected groups during aging. 26 refs., 2 figs., 1 tab.

THE ENHANCEMENT OF CHLOROFORM-INDUCED PLASMA PROTEOLYTIC ACTIVITY BY EPSILON AMINOCAPROIC ACID

PubMed Central

Donaldson, Virginia H.; Ratnoff, Oscar D.

1962-01-01

The proteolytic activity in chloroform-treated plasma euglobulins has been attributed to plasmin. Plasmin can digest both casein and fibrin. Epsilon aminocaproic acid, which inhibits the activation of plasminogen, the precursor of plasmin, by streptokinase, urokinase, and tissue activators enhanced the development of casein hydrolytic activity in a mixture of chloroform and plasma euglobulins. Fibrinolytic activity was also enhanced, but this was evident only if the epsilon aminocaproic acid was removed from the chloroform-treated euglobulins prior to assay. The reasons for the paradoxical enhancement of chloroform-induced casein hydrolysis by euglobulins containing epsilon aminocaproic acid are unclear. However, studies of optimal pH, heat stability, and the effect of ionic strength on the activation of the precursor of this proteolytic enzyme do not differentiate it from plasminogen. PMID:13887179

Memory complaints and APOE-epsilon4 accelerate cognitive decline in cognitively normal elderly.

PubMed

Dik, M G; Jonker, C; Comijs, H C; Bouter, L M; Twisk, J W; van Kamp, G J; Deeg, D J

2001-12-26

To investigate to what extent subjective memory complaints and APOE-epsilon4 allele carriage predict future cognitive decline in cognitively intact elderly persons, by evaluating both their separate and combined effects. We selected 1,168 subjects from the population-based Longitudinal Aging Study Amsterdam who were 62 to 85 years of age and had no obvious cognitive impairment at baseline (Mini-Mental State Examination [MMSE] score, > or =27). Memory complaints and APOE phenotypes were assessed at baseline. MMSE, the Auditory Verbal Learning Test (memory: immediate recall and delayed recall), and the Alphabet Coding Task-15 (information processing speed) were used to study cognitive decline. Follow-up data were collected after 3 and 6 years. Data were analyzed with generalized estimating equations, adjusted for age, sex, education, and depression. Baseline memory complaints were reported by 25.5% of the cognitively intact elderly persons. Overall, 25.3% of the subjects were carriers of at least one APOE-epsilon4 allele. Memory complaints were associated with a greater rate of decline in all cognitive measures, except immediate recall. In addition, APOE-epsilon4 allele carriers had a greater rate of cognitive decline shown by MMSE scores and slower information processing speeds after 6 years. The effects of both memory complaints and APOE-epsilon4 allele carriage were additive: subjects with both factors had a two times higher cognitive decline than did subjects without both factors. Both memory complaints and APOE-epsilon4 allele carriage predict cognitive decline at an early stage. This finding highlights the importance of subjective memory complaints, which are important even at an early stage when objective tests are still unable to detect cognitive deficits and are especially important for elderly carriers of the APOE-epsilon4 allele because they have an additional risk.

Notes on the genus Epsilon de Saussure, 1855 (Hymenoptera: Vespidae: Eumeninae) with description of a new species.

PubMed

Selis, Marco

2017-11-28

The genus Epsilon de Saussure, 1855, is newly recorded from the Moluccas. New distributional records on Epsilon grandipunctatum Gusenleitner, 1996 are provided. Epsilon rufipes Selis, sp. nov. (Moluccas, Aru islands) is described and figured.

A two-equation model for heat transport in wall turbulent shear flows

NASA Astrophysics Data System (ADS)

Nagano, Y.; Kim, C.

1988-08-01

A new proposal for closing the energy equation is presented at the two-equation level of turbulence modeling. The eddy diffusivity concept is used in modeling. However, just as the eddy viscosity is determined from solutions of the k and epsilon equations, so the eddy diffusivity for heat is given as functions of temperature variance, and the dissipation rate of temperature fluctuations, together with k and epsilon. Thus, the proposed model does not require any questionable assumptions for the 'turbulent Prandtl number'. Modeled forms of the equations are developed to account for the physical effects of molecular Prandtl number and near-wall turbulence. The model is tested by application to a flat-plate boundary layer, the thermal entrance region of a pipe, and the turbulent heat transfer in fluids over a wide range of the Prandtl number. Agreement with the experiment is generally very satisfactory.

Notes on rotating turbulence

NASA Technical Reports Server (NTRS)

Zeman, Otto

1994-01-01

This work investigates the turbulent constitutive relation when turbulence is subjected to solid body rotation. Laws regarding spectra and asymptotic decay of rotating homogeneous turbulence were confirmed through large-eddy simulation (LES) computations. Rotating turbulent flows exist in many industrial, geophysical, and astrophysical applications. From Lagrangian analysis a relation between turbulent stress and strain in rotating homogeneous turbulence was inferred. This relation was used to derive the spectral energy flux and, ultimately, the energy spectrum form. If the rotation wavenumber k(sub Omega) lies in the inertial subrange, then for wavenumbers less than k(sub Omega) the turbulence motions are affected by rotation and the energy spectrum slope is modified. Energy decay laws inferred in other reports and the present results suggest a modification of the epsilon model equation and eddy viscosity in k-epsilon models.

Preliminary experience with epsilon aminocaproic acid for treatment of intractable upper tract hematuria in children with hematological disorders.

PubMed

Kaye, Jonathan D; Smith, Edwin A; Kirsch, Andrew J; Cerwinka, Wolfgang H; Elmore, James M

2010-09-01

Gross, intractable hematuria is rare in children. Although the role of epsilon aminocaproic acid in the management of refractory hematuria is well established in the adult population, few data exist about its use in children for this indication. We present our initial experience with epsilon aminocaproic acid for the treatment of intractable hematuria after more conservative measures failed, and propose an algorithm for administration of epsilon aminocaproic acid in children. We reviewed the charts of all patients treated with epsilon aminocaproic acid for intractable gross hematuria at our institution during a period of 36 months. All patients underwent hematological evaluation and any underlying bleeding dyscrasias were addressed. All patients also underwent renal and bladder ultrasound, retrograde pyelogram and ureteroscopy. Demographic information, medical and surgical histories, and epsilon aminocaproic acid dosing and outcomes were recorded. Three boys and 1 girl 11 to 17 years old were treated with epsilon aminocaproic acid. Three patients had sickle trait (1 with nutcracker phenomenon) and 1 had hemophilia A. Three patients required packed red blood cell transfusions to maintain hematocrit. Three renal angiograms were performed, all of which were nondiagnostic. Duration of hematuria ranged from 1 to 52 weeks before administration of epsilon aminocaproic acid. Endoscopic evaluation demonstrated hematuria localized to 1 ureteral orifice in all 4 patients. All patients received 100 mg/kg epsilon aminocaproic acid orally every 6 hours, which uniformly led to cessation of hematuria. Epsilon aminocaproic acid is useful for the management of gross refractory hematuria when more conservative measures fail. Because of its potential side effects, it should be used cautiously. 2010 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Modeling the Oxygen K Absorption in the Interstellar Medium: An XMM-Newton View of Sco X-1

NASA Technical Reports Server (NTRS)

Garcia, J.; Ramirez, J. M.; Kallman, T. R.; Witthoeft, M.; Bautista, M. A.; Mendoza, C.; Palmeri, P.; Quinet, P.

2011-01-01

We investigate the absorption structure of the oxygen in the interstellar medium by analyzing XMM-Newton observations of the low mass X-ray binary Sco X-1. We use simple models based on the O I atomic cross section from different sources to fit the data and evaluate the impact of the atomic data in the interpretation of astrophysical observations. We show that relatively small differences in the atomic calculations can yield spurious results. We also show that the most complete and accurate set of atomic cross sections successfully reproduce the observed data in the 21 - 24.5 Angstrom wavelength region of the spectrum. Our fits indicate that the absorption is mainly due to neutral gas with an ionization parameter of Epsilon = 10(exp -4) erg/sq cm, and an oxygen column density of N(sub O) approx. = 8-10 x 10(exp 17)/sq cm. Our models are able to reproduce both the K edge and the K(alpha) absorption line from O I, which are the two main features in this region. We find no conclusive evidence for absorption by other than atomic oxygen.

Partially-Averaged Navier Stokes Model for Turbulence: Implementation and Validation

NASA Technical Reports Server (NTRS)

Girimaji, Sharath S.; Abdol-Hamid, Khaled S.

2005-01-01

Partially-averaged Navier Stokes (PANS) is a suite of turbulence closure models of various modeled-to-resolved scale ratios ranging from Reynolds-averaged Navier Stokes (RANS) to Navier-Stokes (direct numerical simulations). The objective of PANS, like hybrid models, is to resolve large scale structures at reasonable computational expense. The modeled-to-resolved scale ratio or the level of physical resolution in PANS is quantified by two parameters: the unresolved-to-total ratios of kinetic energy (f(sub k)) and dissipation (f(sub epsilon)). The unresolved-scale stress is modeled with the Boussinesq approximation and modeled transport equations are solved for the unresolved kinetic energy and dissipation. In this paper, we first present a brief discussion of the PANS philosophy followed by a description of the implementation procedure and finally perform preliminary evaluation in benchmark problems.

Epsilon Waves Detected by Various Electrocardiographic Recording Methods in Patients with Arrhythmogenic Right Ventricular Cardiomyopathy

PubMed Central

Wang, Jing; Yang, Bing; Chen, Hongwu; Ju, Weizhu; Chen, Kai; Zhang, Fengxiang; Cao, Kejiang; Chen, Minglong

2010-01-01

We analyzed the shape and distribution of epsilon waves by 3 various methods of electrocardiographic recording in patients with arrhythmogenic right ventricular cardiomyopathy. Thirty-two patients who met recognized diagnostic criteria for arrhythmogenic right ventricular cardiomyopathy were included in this study (24 men and 8 women; mean age, 42.3 ± 12.9 yr). Epsilon waves were detected by standard 12-lead electrocardiography (S-ECG), right-sided precordial lead electrocardiography (R-ECG), and Fontaine bipolar precordial lead electrocardiography (F-ECG). We found 3 types of epsilon waves: wiggle waves, small spike waves, and smooth potential waves that formed an atypical prolonged R' wave. The most common configuration was small spiked waves. In some circumstances, epsilon waves were evident in some leads (especially in leads V1 through V3), but notches were recorded in the other leads during the corresponding phase. These waves could be detected only by S-ECG in 1 patient, R-ECG in 3 patients, and F-ECG in 5 patients; the rates of epsilon-wave detection by these 3 methods were 38% (12/32), 38% (12/32), and 50% (16/32), respectively. However, the detection rate using combined methods was significantly higher than that by S-ECG alone (SF-ECG 56% vs S-ECG 38%, P = 0.0312; and SRF-ECG 66% vs S-ECG 38%, P = 0.0039). In addition, the rate of widespread T-wave inversion (exceeding V3) was significantly higher in patients with epsilon waves than in those without (48% vs 9%, P = 0.029), as was ventricular tachycardia (95% vs 64%, P = 0.019). These 3 electrocardiographic recording methods should be used in combination to improve the detection rate of epsilon waves. PMID:20844612

APOE epsilon 4 allele predicts faster cognitive decline in mild Alzheimer disease.

PubMed

Cosentino, S; Scarmeas, N; Helzner, E; Glymour, M M; Brandt, J; Albert, M; Blacker, D; Stern, Y

2008-05-06

To determine whether APOE epsilon 4 predicts rate of cognitive change in incident and prevalent Alzheimer disease (AD). Individuals were recruited from two longitudinal cohort studies-the Washington Heights and Inwood Columbia Aging Project (WHICAP; population-based) and the Predictors Study (clinic-based)--and were followed for an average of 4 years. Three samples of participants diagnosed with AD, with diverse demographic characteristics and baseline cognitive functioning, were studied: 1) 199 (48%) of the incident WHICAP cases; 2) 215 (54%) of the prevalent WHICAP cases; and 3) 156 (71%) of the individuals diagnosed with AD in the Predictors Study. Generalized estimating equations were used to test whether rate of cognitive change, measured using a composite cognitive score in WHICAP and the Mini-Mental State Examination in Predictors, varied as a function of epsilon 4 status in each sample. The presence of at least one epsilon 4 allele was associated with faster cognitive decline in the incident population-based AD group (p = 0.01). Parallel results were produced for the two prevalent dementia samples only when adjusting for disease severity or excluding the most impaired participants from the analyses. APOE epsilon 4 may influence rate of cognitive decline most significantly in the earliest stages of Alzheimer disease.

A passive physical model for DnaK chaperoning

NASA Astrophysics Data System (ADS)

Uhl, Lionel; Dumont, Audrey; Dukan, Sam

2018-03-01

Almost all living organisms use protein chaperones with a view to preventing proteins from misfolding or aggregation either spontaneously or during cellular stress. This work uses a reaction-diffusion stochastic model to describe the dynamic localization of the Hsp70 chaperone DnaK in Escherichia coli cells during transient proteotoxic collapse characterized by the accumulation of insoluble proteins. In the model, misfolded (‘abnormal’) proteins are produced during alcoholic stress and have the propensity to aggregate with a polymerization-like kinetics. When aggregates diffuse more slowly they grow larger. According to Michaelis-Menten-type kinetics, DnaK has the propensity to bind with misfolded proteins or aggregates in order to catalyse refolding. To match experimental fluorescence microscopy data showing clusters of DnaK-GFP localized in multiple foci, the model includes spatial zones with local reduced diffusion rates to generate spontaneous assemblies of DnaK called ‘foci’. Numerical simulations of our model succeed in reproducing the kinetics of DnaK localization experimentally observed. DnaK starts from foci, moves to large aggregates during acute stress, resolves those aggregates during recovery and finally returns to its initial punctate localization pattern. Finally, we compare real biological events with hypothetical repartitions of the protein aggregates or DnaK. We then notice that DnaK action is more efficient on protein aggregates than on protein homogeneously distributed.

EISCAT observations during MAC/SINE and MAC/Epsilon

NASA Technical Reports Server (NTRS)

Roettger, J.; Hoppe, U.-P.; Hall, C.

1989-01-01

The EISCAT incoherent scatter radar facility in Tromsoe, Norway was operated during the MAC/SINE campaign for 78 hours in the period 10 June to 17 July 1987, and during the MAC/Epsilon campaign for 90 hours in the period 15 October to 5 November 1987. The VHF (224 MHz) radar operations during MAC/SINE yielded most interesting observations of strong coherent echoes from the mesopause region. Characteristic data of these polar mesospheric summer echoes are presented. The UHF (933 MHz) radar operations during MAC/Epsilon were done with 18 deg off zenith beam and allows the deduction of meridonal and horizontal wind components as well as radial velocity spectra in addition to the usual electron density profiles in the D and lower E regions. Some results from the VHF and UHF radars indicating the presence of gravity waves are examined.

Inhibition of B cell proliferation by antisense DNA to both alpha and beta forms of Fc epsilon R II.

PubMed

Bhatti, L; Behle, K; Stevens, R H

1992-10-01

Epstein-Barr Virus (EBV) infection activates B lymphocyte proliferation through partially understood mechanisms, resulting in phenotypic changes, including the appearance of new antigens. One such antigen is Fc epsilon R II/CD-23 which may be relevant for B cell proliferation. We have used anti-sense oligonucleotides to study the importance of the two forms of this molecule for proliferation in the EBV-transformed, Fc epsilon R II +ve lymphoblastoid B cell line, RPMI 8866. Anti-sense oligodeoxynucleotides were generated to the two forms of Fc epsilon R II; Fc epsilon R IIa (alpha) and IIb (beta) which differ only in their intracytoplasmic domains. Addition of increasing concentrations of anti-sense oligonucleotides, ranging from 1 to 30 microM, significantly decreased cellular proliferation as measured by the incorporation of [3H]thymidine (inhibition range 8-88%). Optimum inhibition of cellular proliferation was apparent at 15 microM concentration of both anti-sense Fc epsilon R IIa and IIb (Fc epsilon R IIa, mean +/- SE = 75 +/- 7% inhibition, p less than 0.001; Fc epsilon R IIb, mean +/- SE = 71 +/- 7% inhibition, p less than 0.001). Anti-sense oligonucleotides complementary to the common part of Fc epsilon R II resulted in a similar inhibition of proliferation. Sense oligonucleotides did not induce significant inhibition. Preincubation of sense and anti-sense oligonucleotides resulted in an abrogation of proliferation inhibition. Moreover, none of these oligonucleotides had any effect on a Fc epsilon R II -ve cell line. Incubation with both anti-sense IIa and IIb resulted in additive, but not synergistic inhibition of proliferation. Addition of soluble Fc epsilon R II did not reverse inhibition of proliferation, suggesting that membrane-bound or intracellular rather than soluble Fc epsilon R II was important for the induced proliferation. Analysis of cell surface expression for Fc epsilon II indicated that while there was a pronounced effect on cell number

Achieving highly efficient and broad-angle polarization beam filtering using epsilon-near-zero metamaterials mimicked by metal-dielectric multilayers

NASA Astrophysics Data System (ADS)

Wu, Feng

2018-03-01

We report a highly efficient and broad-angle polarization beam filter at visible wavelengths using an anisotropic epsilon-near-zero metamaterial mimicked by a multilayer composed of alternative subwavelength magnesium fluoride and silver layers. The underlying physics can be explained by the dramatic difference between two orthogonal polarizations' iso-frequency curves of anisotropic epsilon-near-zero metamaterials. Transmittance for two orthogonal polarization waves and the polarization extinction ratio are calculated via the transfer matrix method to assess the comprehensive performance of the proposed polarization beam filter. From the simulation results, the proposed polarization beam filter is highly efficient (the polarization extinction ratio is far larger than two orders of magnitude) and has a broad operating angle range (ranging from 30° to 75°). Finally, we show that the proper tailoring of the periodic number enables us to obtain high comprehensive performance of the proposed polarization beam filter.

The History of Delta Pi Epsilon, 1936-1986--A Golden Past: Foundation for the Future.

ERIC Educational Resources Information Center

Crank, Floyd L.

1986-01-01

The history of Delta Pi Epsilon (1936-1986) is presented, citing such highlights as research awards, new chapters, publications, annual conferences, organization of new committees, and conventions. Facts about Delta Pi Epsilon and a list of references are included also. (CT)

A double-blind, placebo-controlled trial of epsilon-aminocaproic acid for reducing blood loss in coronary artery bypass grafting surgery.

PubMed

Kikura, Mutsuhito; Levy, Jerrold H; Tanaka, Kenichi A; Ramsay, James G

2006-02-01

Epsilon-aminocaproic acid is a plasmin inhibitor that potentially reduces perioperative bleeding when administered prophylactically to cardiac surgery patients. To evaluate the efficacy of epsilon-aminocaproic acid, a prospective placebo-controlled trial was conducted in patients undergoing primary coronary artery bypass grafting surgery. One hundred patients were randomly assigned to receive either epsilon-aminocaproic acid (100 mg/kg before skin incision followed by 1 g/hour continuous infusion until chest closure, 10 g in cardiopulmonary bypass circuit) or placebo, and the efficacy of epsilon-aminocaproic acid was evaluated by the reduction in postoperative thoracic-drainage volume and in donor-blood transfusion up to postoperative day 12. Postoperative thoracic-drainage volume was significantly lower in the epsilon-aminocaproic acid group compared with the placebo group (epsilon-aminocaproic acid, 649 +/- 261 mL; versus placebo, 940 +/- 626 mL; p=0.003). There were no significant differences between the epsilon-aminocaproic acid and placebo groups in the percentage of patients requiring donor red blood cell transfusions (epsilon-aminocaproic acid, 24%; versus placebo, 18%; p=0.62) or in the number of units of donor red blood cells transfused (epsilon-aminocaproic acid, 2.2 +/- 0.8 U; versus placebo, 1.9 +/- 0.8 U; p=0.29). Epsilon-aminocaproic acid did not reduce the risk of donor red blood cell transfusions compared with placebo (odds ratio: 1.2, 95% confidence interval; 0.4 to 3.2, p=0.63). Prophylactic administration of epsilon-aminocaproic acid reduces postoperative thoracic-drainage volume by 30%, but it may not be potent enough to reduce the requirement and the risk for donor blood transfusion in cardiac surgery patients. This information is useful for deciding on a therapy for hemostasis in cardiac surgery.

Dose-dependent utilisation of casein-linked lysinoalanine, N(epsilon)-fructoselysine and N(epsilon)-carboxymethyllysine in rats.

PubMed

Somoza, Veronika; Wenzel, Elisabeth; Weiss, Carola; Clawin-Rädecker, Ingrid; Grübel, Nadine; Erbersdobler, Helmut F

2006-09-01

During the heat treatment of protein-containing foods, the amino acid lysine is most prone to undergo chemical reactions in the course of amino acid cross-linking or Maillard reactions. Among the reaction products formed, lysinoalanine (LAL), N(epsilon)-fructoselysine (FL) and N(epsilon)-carboxymethyllysine (CML) are those which serve as sensitive markers for the heat treatment applied. From a nutritional perspective, these compounds are ingested with the diet in considerable amounts but information about their metabolic transit and putative in vivo effects is scarce. In the present study, casein-linked LAL, FL and CML were administered to rats in two different doses for 10 days. Quantitation of LAL, FL and CML in plasma, tissue and faeces samples revealed that the kidneys are the predominant sites of accumulation and excretion. The maximum percent of dietary LAL, FL and CML excreted in the urine was 5.6, 5.2 and 29%, whereas the respective recoveries in the kidneys were 0.02, 26 and 1.4%. The plasma and tissue analyses revealed that the endogenous load of either compound is increased by its dietary intake. But the dose-dependent utilisation of dietary protein-linked LAL, FL and CML in rats has been demonstrated for the first time to vary substantially from each other.

Epsilon metal waste form for immobilization of noble metals from used nuclear fuel

NASA Astrophysics Data System (ADS)

Crum, Jarrod V.; Strachan, Denis; Rohatgi, Aashish; Zumhoff, Mac

2013-10-01

Epsilon metal (ɛ-metal), an alloy of Mo, Pd, Rh, Ru, and Tc, is being developed as a waste form to treat and immobilize the undissolved solids and dissolved noble metals from aqueous reprocessing of commercial used nuclear fuel. Epsilon metal is an attractive waste form for several reasons: increased durability relative to borosilicate glass, it can be fabricated without additives (100% waste loading), and in addition it also benefits borosilicate glass waste loading by eliminating noble metals from the glass, thus the processing problems related to their insolubility in glass. This work focused on the processing aspects of the epsilon metal waste form development. Epsilon metal is comprised of refractory metals resulting in high alloying temperatures, expected to be 1500-2000 °C, making it a non-trivial phase to fabricate by traditional methods. Three commercially available advanced technologies were identified: spark-plasma sintering, microwave sintering, and hot isostatic pressing, and investigated as potential methods to fabricate this waste form. Results of these investigations are reported and compared in terms of bulk density, phase assemblage (X-ray diffraction and elemental analysis), and microstructure (scanning electron microscopy).

The effect of epsilon-caproyl/D,L-lactyl unit composition on the hydrolytic degradation of poly(D,L-lactide-ran-epsilon-caprolactone)-poly(ethylene glycol)-poly(D,L-lactide-ran-epsilon-caprolactone).

PubMed

Cho, Hanjin; An, Jeongho

2006-02-01

The degradation of P(DLAX-ran-CLY)-b-PEG-b-P(DLAX-ran-CLY)s ( P(DLAX-ran-CLY): Poly(D,L-lactide-ran-epsilon-caprolactone), PEG: Poly(ethylene glycol), X: D,L-lactyl unit fraction, Y: epsilon-caproyl unit fraction) is investigated. The fraction of DLA in the both end blocks is varied while the overall molecular weight and molecular weight of PEG are kept constant. DSC, XRD and GPC are employed to track the degradation process up to 200 days. Also the change in the surface and cross-sectional morphology is provided by SEM micro-photographs. The result of water absorption and weight loss characterization reveals that the incorporation of DLA in the polyester block could be an effective tool to facilitate degradation as well as water absorption. By tracking the change of molecular weight and polydispersity, chain scission and transport or removal of degraded product from the specimen were found to play a complex role in overall degradation.

The K1 internal tide simulated by a 1/10° OGCM

NASA Astrophysics Data System (ADS)

Li, Zhuhua; von Storch, Jin-Song; Müller, Malte

2017-05-01

This paper quantifies the K1 internal tide simulated by the 1/10° STORMTIDE model, which simultaneously resolves the eddying general circulation and tides. An evident feature of the K1 internal tide is the critical latitude φc at 30°, which in the STORMTIDE model is characterized by variations from a high energy level equatorward of 30° to a low energy level poleward of 30°. This critical latitude separates the internal tide dynamics into bottom-trapped (at latitudes |φ| > |φc|) and freely propagating (at |φ| < |φc|) motions, respectively. Both types of motions are examined. The bottom-trapping process reveals a gradual vertical decrease of wave energy away from the bottom. The vertical scale, over which the wave energy decrease occurs, is smaller in shallow than in deep water regions. For the freely propagating K1 internal tides, the STORMTIDE model is able to simulate the first three low modes, with the wavelengths ranging from 200-400 km, 100-200 km, to 60-120 km. These wavelength distributions reveal not only a zonal asymmetry but also a poleward increase up to φc, in particular in the Pacific. Such distributions indicate the impact of stratification N and the Coriolis frequency f on the wavelengths. The large wavelength gradient near φc is caused by the wavelength increase from finite values at subcritical latitudes to infinity at φc. Compared to the M2 internal tide, the lower K1 tidal frequency leads to a stronger role of f, hence a weaker effect of N, for the K1 internal tide.

Design, modeling, simulation and evaluation of a distributed energy system

NASA Astrophysics Data System (ADS)

Cultura, Ambrosio B., II

This dissertation presents the design, modeling, simulation and evaluation of distributed energy resources (DER) consisting of photovoltaics (PV), wind turbines, batteries, a PEM fuel cell and supercapacitors. The distributed energy resources installed at UMass Lowell consist of the following: 2.5kW PV, 44kWhr lead acid batteries and 1500W, 500W & 300W wind turbines, which were installed before year 2000. Recently added to that are the following: 10.56 kW PV array, 2.4 kW wind turbine, 29 kWhr Lead acid batteries, a 1.2 kW PEM fuel cell and 4-140F supercapacitors. Each newly added energy resource has been designed, modeled, simulated and evaluated before its integration into the existing PV/Wind grid-connected system. The Mathematical and Simulink model of each system was derived and validated by comparing the simulated and experimental results. The Simulated results of energy generated from a 10.56kW PV system are in good agreement with the experimental results. A detailed electrical model of a 2.4kW wind turbine system equipped with a permanent magnet generator, diode rectifier, boost converter and inverter is presented. The analysis of the results demonstrates the effectiveness of the constructed simulink model, and can be used to predict the performance of the wind turbine. It was observed that a PEM fuel cell has a very fast response to load changes. Moreover, the model has validated the actual operation of the PEM fuel cell, showing that the simulated results in Matlab Simulink are consistent with the experimental results. The equivalent mathematical equation, derived from an electrical model of the supercapacitor, is used to simulate its voltage response. The model is completely capable of simulating its voltage behavior, and can predict the charge time and discharge time of voltages on the supercapacitor. The bi-directional dc-dc converter was designed in order to connect the 48V battery bank storage to the 24V battery bank storage. This connection was

Evaluation of different fluids for detection of Clostridium perfringens type D epsilon toxin in sheep with experimental enterotoxemia.

PubMed

Layana, Jorge E; Fernandez Miyakawa, Mariano E; Uzal, Francisco A

2006-08-01

Enterotoxemia caused by Clostridium perfringens type D is a highly lethal disease of sheep, goats and other ruminants. The diagnosis of this condition is usually confirmed by detection of epsilon toxin, a major exotoxin produced by C. perfringens types B and D, in the intestinal content of affected animals. It has been suggested that other body fluids can also be used for detection of epsilon toxin. This study was performed to evaluate the usefulness of intestinal content versus other body fluids in detecting epsilon toxin in cases of sheep enterotoxemia. Samples of duodenal, ileal and colon contents, pericardial and abdominal fluids, aqueous humor and urine from 15 sheep with experimentally induced enterotoxemia, were analysed for epsilon toxin using a capture ELISA. Epsilon toxin was detected in 92% of the samples of ileal content, 64% of the samples of duodenal content, 57% of the samples of colon content and in 7% of the samples of pericardial fluid and aqueous humor. No epsilon toxin was found in samples of abdominal fluid or urine from the animals with enterotoxemia or in any samples from six clinically healthy sheep used as negative controls. The results of this study indicate that with the diagnostic capture ELISA used, intestinal content (preferably ileum) should be used for C. perfringens type D epsilon toxin detection in suspected cases of sheep enterotoxemia.

Molecular cloning and expression of epsilon toxin from Clostridium perfringens type D and tests of animal immunization.

PubMed

Souza, A M; Reis, J K P; Assis, R A; Horta, C C; Siqueira, F F; Facchin, S; Alvarenga, E R; Castro, C S; Salvarani, F M; Silva, R O S; Pires, P S; Contigli, C; Lobato, F C F; Kalapothakis, E

2010-02-18

Epsilon toxin produced by Clostridium perfringens types B and D causes enterotoxemia in sheep, goats and calves. Enterotoxemia can cause acute or superacute disease, with sudden death of the affected animal. It provokes huge economic losses when large numbers of livestock are affected. Therapeutic intervention is challenging, because the disease progresses very rapidly. However, it can be prevented by immunization with specific immunogenic vaccines. We cloned the etx gene, encoding epsilon toxin, into vector pET-11a; recombinant epsilon toxin (rec-epsilon) was expressed in inclusion bodies and was used for animal immunization. Serum protection was evaluated and cross-serum neutralization tests were used to characterize the recombinant toxin. To analyze the potency of the toxin (as an antigen), rabbits were immunized with 50, 100 or 200 microg recombinant toxin, using aluminum hydroxide gel as an adjuvant. Titers of 10, 30 and 40 IU/mL were obtained, respectively. These titers were higher than the minimum level required by the European Pharmacopoeia (5 IU/mL) and by the USA Code of Federal Regulation (2 IU/mL). This rec-epsilon is a good candidate for vaccine production against enterotoxemia caused by epsilon toxin of C. perfringens type D.

Three-Dimensional Unsteady Simulation of Aerodynamics and Heat Transfer in a Modern High Pressure Turbine Stage

NASA Technical Reports Server (NTRS)

Shyam, Vikram; Ameri, Ali

2009-01-01

Unsteady 3-D RANS simulations have been performed on a highly loaded transonic turbine stage and results are compared to steady calculations as well as to experiment. A low Reynolds number k-epsilon turbulence model is employed to provide closure for the RANS system. A phase-lag boundary condition is used in the tangential direction. This allows the unsteady simulation to be performed by using only one blade from each of the two rows. The objective of this work is to study the effect of unsteadiness on rotor heat transfer and to glean any insight into unsteady flow physics. The role of the stator wake passing on the pressure distribution at the leading edge is also studied. The simulated heat transfer and pressure results agreed favorably with experiment. The time-averaged heat transfer predicted by the unsteady simulation is higher than the heat transfer predicted by the steady simulation everywhere except at the leading edge. The shock structure formed due to stator-rotor interaction was analyzed. Heat transfer and pressure at the hub and casing were also studied. Thermal segregation was observed that leads to the heat transfer patterns predicted by steady and unsteady simulations to be different.

Assessments of a Turbulence Model Based on Menter's Modification to Rotta's Two-Equation Model

NASA Technical Reports Server (NTRS)

Abdol-Hamid, Khaled S.

2013-01-01

The main objective of this paper is to construct a turbulence model with a more reliable second equation simulating length scale. In the present paper, we assess the length scale equation based on Menter s modification to Rotta s two-equation model. Rotta shows that a reliable second equation can be formed in an exact transport equation from the turbulent length scale L and kinetic energy. Rotta s equation is well suited for a term-by-term modeling and shows some interesting features compared to other approaches. The most important difference is that the formulation leads to a natural inclusion of higher order velocity derivatives into the source terms of the scale equation, which has the potential to enhance the capability of Reynolds-averaged Navier-Stokes (RANS) to simulate unsteady flows. The model is implemented in the PAB3D solver with complete formulation, usage methodology, and validation examples to demonstrate its capabilities. The detailed studies include grid convergence. Near-wall and shear flows cases are documented and compared with experimental and Large Eddy Simulation (LES) data. The results from this formulation are as good or better than the well-known SST turbulence model and much better than k-epsilon results. Overall, the study provides useful insights into the model capability in predicting attached and separated flows.

Computation and modeling of aero-thermal fields in turbine cascades and strongly curved ducts

NASA Technical Reports Server (NTRS)

Luo, J.; Lakshminarayana, B.

1994-01-01

Advanced turbulence models are crucial for accurate prediction of rocket engine flows, due to existence of very large extra strain rates, such as strong streamline curvature. Numerical simulation of the turbulent flow in a strongly curved turn-around duct (TAD) has been carried out with a Reynolds stress model (RSM), an algebraic Reynolds stress model (ARSM) and a kappa-epsilon model. the RSM model and the ARSM model are found to capture the turbulence damping due to the convex curvature, but underpredict the turbulence enhancement caused by the concave curvature. To capture the concave curvature effects, it is necessary to modify the epsilon-equation. The modification of episilon-equation suggested by Launder, et.al, provides the correct trend, but over-corrects the curvature effects. A comparative study of two modes of transition in gas turbine, the by-pass transition and the separation-induced transition, has been carried out with several low-Reynolds-number (LRN) kappa-epsilon models. Effects of blade surface pressure gradient, freestream turbulence and Reynolds number on the blade boundary layer development, and particularly the inception of transition are examined in detail. The present study indicates that the turbine blade transition, in the presence of high freestream turbulence, is predicted well with LRN kappa-epsilon models employed.

Attenuation of epsilon(sub eff) of coplanar waveguide transmission lines on silicon substrates

NASA Technical Reports Server (NTRS)

Taub, Susan R.; Young, Paul G.

1993-01-01

Attenuation and epsilon(sub eff) of Coplanar Waveguide (CPW) transmission lines were measured on Silicon substrates with resistivities ranging from 400 to greater than 30,000 ohm-cm, that have a 1000 angstrom coating of SiO2. Both attenuation and epsilon(sub eff) are given over the frequency range 5 to 40 GHz for various strip and slot widths. These measured values are also compared to the theoretical values.

Retinal microvascular damage and vasogenic edema produced by Clostridium perfringens type D epsilon toxin in rats.

PubMed

Finnie, John W; Manavis, Jim; Casson, Robert J; Chidlow, Glyn

2014-05-01

When the brain is exposed to large circulating levels of Clostridium perfringens type D epsilon toxin (EXT), microvascular damage with resulting severe, generalized, vasogenic edema seems to be principally responsible for the ensuing acute, and frequently fatal, neurologic disorder. However, although the blood-retinal barrier resembles in many respects the blood-brain barrier, retinal changes in livestock with acute epsilon intoxication have not, to the authors' knowledge, been previously reported. In rats given an acute dose of ETX, retinal microvascular endothelial injury led to widespread vasogenic edema as assessed immunohistochemically by marked plasma albumin extravasation. As laboratory rodents are a good model of the domestic livestock disease produced by ETX, it is probable that the latter sustain some visual deficit when exposed to large doses of this potent neurotoxin. © 2014 The Author(s).

H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations.

PubMed

Anandakrishnan, Ramu; Aguilar, Boris; Onufriev, Alexey V

2012-07-01

The accuracy of atomistic biomolecular modeling and simulation studies depend on the accuracy of the input structures. Preparing these structures for an atomistic modeling task, such as molecular dynamics (MD) simulation, can involve the use of a variety of different tools for: correcting errors, adding missing atoms, filling valences with hydrogens, predicting pK values for titratable amino acids, assigning predefined partial charges and radii to all atoms, and generating force field parameter/topology files for MD. Identifying, installing and effectively using the appropriate tools for each of these tasks can be difficult for novice and time-consuming for experienced users. H++ (http://biophysics.cs.vt.edu/) is a free open-source web server that automates the above key steps in the preparation of biomolecular structures for molecular modeling and simulations. H++ also performs extensive error and consistency checking, providing error/warning messages together with the suggested corrections. In addition to numerous minor improvements, the latest version of H++ includes several new capabilities and options: fix erroneous (flipped) side chain conformations for HIS, GLN and ASN, include a ligand in the input structure, process nucleic acid structures and generate a solvent box with specified number of common ions for explicit solvent MD.

Regulation of mTOR and S6K1 activation by the nPKC isoforms, PKCepsilon and PKCdelta, in adult cardiac muscle cells.

PubMed

Moschella, Phillip C; Rao, Vijay U; McDermott, Paul J; Kuppuswamy, Dhandapani

2007-12-01

Activation of both mTOR and its downstream target, S6K1 (p70 S6 kinase) have been implicated to affect cardiac hypertrophy. Our earlier work, in a feline model of 1-48 h pressure overload, demonstrated that mTOR/S6K1 activation occurred primarily through a PKC/c-Raf pathway. To further delineate the role of specific PKC isoforms on mTOR/S6K1 activation, we utilized primary cultures of adult feline cardiomyocytes in vitro and stimulated with endothelin-1 (ET-1), phenylephrine (PE), TPA, or insulin. All agonist treatments resulted in S2248 phosphorylation of mTOR and T389 and S421/T424 phosphorylation of S6K1, however only ET-1 and TPA-stimulated mTOR/S6K1 activation was abolished with infection of a dominant negative adenoviral c-Raf (DN-Raf) construct. Expression of DN-PKC(epsilon) blocked ET-1-stimulated mTOR S2448 and S6K1 S421/T424 and T389 phosphorylation but had no effect on insulin-stimulated S6K1 phosphorylation. Expression of DN-PKC(delta) or pretreatment of cardiomyocytes with rottlerin, a PKC(delta) specific inhibitor, blocked both ET-1 and insulin stimulated mTOR S2448 and S6K1 T389 phosphorylation. However, treatment with Gö6976, a specific classical PKC (cPKC) inhibitor did not affect mTOR/S6K1 activation. These data indicate that: (i) PKC(epsilon) is required for ET-1-stimulated T421/S424 phosphorylation of S6K1, (ii) both PKC(epsilon) and PKC(delta) are required for ET-1-stimulated mTOR S2448 and S6K1 T389 phosphorylation, (iii) PKC(delta) is also required for insulin-stimulated mTOR S2448 and S6K1 T389 phosphorylation. Together, these data delineate both distinct and combinatorial roles of specific PKC isoforms on mTOR and S6K1 activation in adult cardiac myocytes following hypertrophic stimulation.

Prediction of the solubility of cucurbitacin drugs in self-associating poly(ethylene oxide)-b-poly(alpha-benzyl carboxylate epsilon-caprolactone) block copolymer with different tacticities using molecular dynamics simulation.

PubMed

Patel, Sarthak K; Lavasanifar, Afsaneh; Choi, Phillip

2010-01-01

Molecular dynamics (MD) simulation was used to investigate the solubility of two hydrophobic drugs Cucurbitacin B (CuB) and Cucurbitacin I (CuI) in poly(ethylene oxide)-b-poly(alpha-benzyl carboxylate epsilon-caprolactone) (PEO-b-PBCL) block copolymers with different tacticities. In particular, di-block copolymer with three different tacticities viz. PEO-b-iPBCL, PEO-b-sPBCL, and PEO-b-aPBCL were used. The solubility was quantified by calculating the corresponding Flory-Huggins interaction parameters (chi) using random binary mixture models with 10wt% of drug. The tacticity of the di-block copolymer was found to influence significantly the solubility of two drugs in it. In particular, based on MD simulation results, only PEO-b-sPBCL exhibited solubility while the other two did not. Given the fact that the drugs were shown to be soluble in PEO-b-PBCL experimentally, it is predicted that the tacticity of the di-block copolymer synthesized in experiment is syndiotactic. This predication matches well with the dominant ring opening polymerization of cyclic lactones to syndiotactic polymers by stannous octoate as catalyst used to prepare PEO-b-PBCL block copolymers in our previous experiments. The simulation results showed that the solubility of the drugs in PEO-b-sPBCL is attributed to the favorable intra-molecular interaction of the di-block copolymer and favorable intermolecular interaction between the di-block copolymer and the drugs. Radial distribution function analysis provides useful insights into the nature and type of the intermolecular interactions.

APOE epsilon4 is associated with impaired verbal learning in patients with MS.

PubMed

Koutsis, G; Panas, M; Giogkaraki, E; Potagas, C; Karadima, G; Sfagos, C; Vassilopoulos, D

2007-02-20

To investigate the effect of APOE epsilon4 on different cognitive domains in a population of Greek patients with multiple sclerosis (MS). A total of 125 patients with MS and 43 controls were included in this study and underwent neuropsychological assessment with Rao's Brief Repeatable Battery. All patients with MS were genotyped for APOE. The effect of APOE epsilon4 on different cognitive domains was investigated. Fifty-one percent of patients with MS were cognitively impaired. E4 carriers had a sixfold increase in the relative risk of impairment in verbal learning vs noncarriers (OR 6.28, 95% CI 1.74 to 22.69). This effect was domain-specific and was not observed in other cognitive domains assessed by the battery. We found an association of APOE epsilon4 with impaired verbal learning in patients with multiple sclerosis.

A critical evaluation of two-equation models for near wall turbulence

NASA Technical Reports Server (NTRS)

Speziale, Charles G.; Abid, Ridha; Anderson, E. Clay

1990-01-01

A variety of two-equation turbulence models,including several versions of the K-epsilon model as well as the K-omega model, are analyzed critically for near wall turbulent flows from a theoretical and computational standpoint. It is shown that the K-epsilon model has two major problems associated with it: the lack of natural boundary conditions for the dissipation rate and the appearance of higher-order correlations in the balance of terms for the dissipation rate at the wall. In so far as the former problem is concerned, either physically inconsistent boundary conditions have been used or the boundary conditions for the dissipation rate have been tied to higher-order derivatives of the turbulent kinetic energy which leads to numerical stiffness. The K-omega model can alleviate these problems since the asymptotic behavior of omega is known in more detail and since its near wall balance involves only exact viscous terms. However, the modeled form of the omega equation that is used in the literature is incomplete-an exact viscous term is missing which causes the model to behave in an asymptotically inconsistent manner. By including this viscous term and by introducing new wall damping functions with improved asymptotic behavior, a new K-tau model (where tau is identical with 1/omega is turbulent time scale) is developed. It is demonstrated that this new model is computationally robust and yields improved predictions for turbulent boundary layers.

Validation and optimization of SST k-ω turbulence model for pollutant dispersion within a building array

NASA Astrophysics Data System (ADS)

Yu, Hesheng; Thé, Jesse

2016-11-01

The prediction of the dispersion of air pollutants in urban areas is of great importance to public health, homeland security, and environmental protection. Computational Fluid Dynamics (CFD) emerges as an effective tool for pollutant dispersion modelling. This paper reports and quantitatively validates the shear stress transport (SST) k-ω turbulence closure model and its transitional variant for pollutant dispersion under complex urban environment for the first time. Sensitivity analysis is performed to establish recommendation for the proper use of turbulence models in urban settings. The current SST k-ω simulation is validated rigorously by extensive experimental data using hit rate for velocity components, and the "factor of two" of observations (FAC2) and fractional bias (FB) for concentration field. The simulation results show that current SST k-ω model can predict flow field nicely with an overall hit rate of 0.870, and concentration dispersion with FAC2 = 0.721 and FB = 0.045. The flow simulation of the current SST k-ω model is slightly inferior to that of a detached eddy simulation (DES), but better than that of standard k-ε model. However, the current study is the best among these three model approaches, when validated against measurements of pollutant dispersion in the atmosphere. This work aims to provide recommendation for proper use of CFD to predict pollutant dispersion in urban environment.

Expression of Clostridium perfringens epsilon-beta fusion toxin gene in E. coli and its immunologic studies in mouse.

PubMed

Pilehchian Langroudi, Reza; Shamsara, Mehdi; Aghaiypour, Khosrow

2013-07-11

Clostridium perfringens is an anaerobic spore-forming, pathogenic bacterium that is responsible for severe diseases in humans and livestock. In the present study, an epsilon-beta fusion toxin was expressed as a soluble protein in E. coli and the recombinant cell lysate was used for immunization studies in mouse. Potency of the toxin (as an antigen) induced 6 and 10IU/ml of epsilon and beta anti-toxin in rabbit, respectively. These titers were higher than the minimum level required by the European Pharmacopoeia for epsilon and beta toxins. Experimental challenge with the recombinant fusion toxoid revealed that it could protect mice against C. perfringens epsilon and beta toxins. Toxicity of the fusion toxin was studied by histopathological findings, which were the same as the native toxins. In conclusion, E. coli is a suitable expression host for immunogenic epsilon-beta fusion toxin of C. perfringens. Copyright © 2013 Elsevier Ltd. All rights reserved.

Eclipse of epsilon Aurigae

NASA Astrophysics Data System (ADS)

Templeton, Matthew R.

2009-07-01

The bright, long-period, eclipsing binary star epsilon Aurigae is predicted to begin its next eclipse late July or early August of 2009. Epsilon Aurigae is now past solar conjunction and has reappeared as a morning object. All observers -- both visual and instrumental -- are encouraged to contribute observations of the eclipse during the next two years, beginning immediately for morning observers. Observations are urgently requested right now because it is less likely to be observed in the morning, and the eclipse will begin within the next month. The AAVSO is participating in a global campaign to record this eclipse as part of the International Year of Astronomy 2009 celebrations, organized by the Citizen Sky project (http://www.citizensky.org). For experienced visual observers, please observe this star on a weekly basis, using charts available via VSP from the AAVSO website. For novice visual observers, we recommend participating in this observing program by following the Citizen Sky 10-Star tutorial program, which provides a simple training experience in variable star observing. Photoelectric observers belonging to the AAVSO PEP-V program may submit data as usual via the WebObs feature of the AAVSO website Blue&Gold section. Photoelectric observers may also contribute reduced observations in all filters (including infrared J- and H-bands) directly to the AAVSO via WebObs. Observers using wide-field CCD and DSLR systems are also encouraged to participate; avoid saturating the star. For those with narrower-field systems (D < 2 degrees), we recommend taking a large number (10-100) of very short exposures and then stacking the resulting images. Observations should be submitted to the AAVSO International Database. Aaron Price is coordinating Citizen Sky for the AAVSO, and Dr. Robert Stencel and Jeffrey Hopkins are co-leading the precision photometry efforts.

Determination of N epsilon-(carboxymethyl)lysine in foods and related systems.

PubMed

Ames, Jennifer M

2008-04-01

The sensitive and specific determination of advanced glycation end products (AGEs) is of considerable interest because these compounds have been associated with pro-oxidative and proinflammatory effects in vivo. AGEs form when carbonyl compounds, such as glucose and its oxidation products, glyoxal and methylglyoxal, react with the epsilon-amino group of lysine and the guanidino group of arginine to give structures including N epsilon-(carboxymethyl)lysine (CML), N epsilon-(carboxyethyl)lysine, and hydroimidazolones. CML is frequently used as a marker for AGEs in general. It exists in both the free or peptide-bound forms. Analysis of CML involves its extraction from the food (including protein hydrolysis to release any peptide-bound adduct) and determination by immunochemical or instrumental means. Various factors must be considered at each step of the analysis. Extraction, hydrolysis, and sample clean-up are all less straight forward for food samples, compared to plasma and tissue. The immunochemical and instrumental methods all have their advantages and disadvantages, and no perfect method exists. Currently, different procedures are being used in different laboratories, and there is an urgent need to compare, improve, and validate methods.

Dissociation and Internal Excitation of Molecular Nitrogen Due to N + N2 Collisions Using Direct Molecular Simulation

NASA Technical Reports Server (NTRS)

Grover, Maninder S.; Schwartzentruber, Thomas E.; Jaffe, Richard L.

2017-01-01

In this work we present a molecular level study of N2+N collisions, focusing on excitation of internal energy modes and non-equilibrium dissociation. The computation technique used here is the direct molecular simulation (DMS) method and the molecular interactions have been modeled using an ab-initio potential energy surface (PES) developed at NASA's Ames Research Center. We carried out vibrational excitation calculations between 5000K and 30000K and found that the characteristic vibrational excitation time for the N + N2 process was an order of magnitude lower than that predicted by the Millikan and White correlation. It is observed that during vibrational excitation the high energy tail of the vibrational energy distribution gets over populated first and the lower energy levels get populated as the system evolves. It is found that the non-equilibrium dissociation rate coefficients for the N + N2 process are larger than those for the N2 + N2 process. This is attributed to the non-equilibrium vibrational energy distributions for the N + N2 process being less depleted than that for the N2 +N2 process. For an isothermal simulation we find that the probability of dissociation goes as 1/T(sub tr) for molecules with internal energy (epsilon(sub int)) less than approximately 9.9eV, while for molecules with epsilon (sub int) greater than 9.9eV the dissociation probability was weakly dependent on translational temperature of the system. We compared non-equilibrium dissociation rate coefficients and characteristic vibrational excitation times obtained by using the ab-initio PES developed at NASA's Ames Research Center to those obtained by using an ab-initio PES developed at the University of Minnesota. Good agreement was found between the macroscopic properties and molecular level description of the system obtained by using the two PESs.

Sub-micrometer epsilon-near-zero electroabsorption modulators enabled by high-mobility cadmium oxide

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campione, Salvatore; Wood, Michael; Serkland, Darwin K.

Here, epsilon-near-zero materials provide a new path for tailoring light-matter interactions at the nanoscale. In this paper, we analyze a compact electroabsorption modulator based on epsilon-near-zero confinement in transparent conducting oxide films. The non-resonant modulator operates through field-effect carrier density tuning. We compare the performance of modulators composed of two different conducting oxides, namely indium oxide (In2O3) and cadmium oxide (CdO), and show that better modulation performance is achieved when using high-mobility (i.e. low-loss) epsilon-near-zero materials such as CdO. In particular, we show that non-resonant electroabsorption modulators with sub-micron lengths and greater than 5 dB extinction ratios may be achievedmore » through the proper selection of high-mobility transparent conducting oxides, opening a path for device miniaturization and increased modulation depth.« less

Sub-micrometer epsilon-near-zero electroabsorption modulators enabled by high-mobility cadmium oxide

DOE PAGES

Campione, Salvatore; Wood, Michael; Serkland, Darwin K.; ...

2017-07-06

Here, epsilon-near-zero materials provide a new path for tailoring light-matter interactions at the nanoscale. In this paper, we analyze a compact electroabsorption modulator based on epsilon-near-zero confinement in transparent conducting oxide films. The non-resonant modulator operates through field-effect carrier density tuning. We compare the performance of modulators composed of two different conducting oxides, namely indium oxide (In2O3) and cadmium oxide (CdO), and show that better modulation performance is achieved when using high-mobility (i.e. low-loss) epsilon-near-zero materials such as CdO. In particular, we show that non-resonant electroabsorption modulators with sub-micron lengths and greater than 5 dB extinction ratios may be achievedmore » through the proper selection of high-mobility transparent conducting oxides, opening a path for device miniaturization and increased modulation depth.« less

Recommendations for Achieving Accurate Numerical Simulation of Tip Clearance Flows in Transonic Compressor Rotors

NASA Technical Reports Server (NTRS)

VanZante, Dale E.; Strazisar, Anthony J.; Wood, Jerry R,; Hathaway, Michael D.; Okiishi, Theodore H.

2000-01-01

The tip clearance flows of transonic compressor rotors are important because they have a significant impact on rotor and stage performance. While numerical simulations of these flows are quite sophisticated. they are seldom verified through rigorous comparisons of numerical and measured data because these kinds of measurements are rare in the detail necessary to be useful in high-speed machines. In this paper we compare measured tip clearance flow details (e.g. trajectory and radial extent) with corresponding data obtained from a numerical simulation. Recommendations for achieving accurate numerical simulation of tip clearance flows are presented based on this comparison. Laser Doppler Velocimeter (LDV) measurements acquired in a transonic compressor rotor, NASA Rotor 35, are used. The tip clearance flow field of this transonic rotor was simulated using a Navier-Stokes turbomachinery solver that incorporates an advanced k-epsilon turbulence model derived for flows that are not in local equilibrium. Comparison between measured and simulated results indicates that simulation accuracy is primarily dependent upon the ability of the numerical code to resolve important details of a wall-bounded shear layer formed by the relative motion between the over-tip leakage flow and the shroud wall. A simple method is presented for determining the strength of this shear layer.

Redundant role of protein kinase C delta and epsilon during mouse embryonic development.

PubMed

Carracedo, Sergio; Sacher, Frank; Brandes, Gudrun; Braun, Ursula; Leitges, Michael

2014-01-01

Protein Kinase C delta and epsilon are mediators of important cellular events, such as cell proliferation, migration or apoptosis. The formation of blood vessels, i.e., vasculo- and angiogenesis, is a process where these isoforms have also been shown to participate. However, mice deficient in either Protein Kinase C delta or epsilon are viable and therefore their individual contribution to the formation of the vasculature appeared so far dispensable. In this study, we show that double null mutation of Protein Kinase C delta and epsilon causes embryonic lethality at approximately E9.5. At this stage, whole mount staining of the endothelial marker CD31 in double null embryos revealed defective blood vessel formation. Moreover, culture of double deficient mouse allantois showed impaired endothelial cell organization, and analyses of double deficient embryo sections showed dilated vessels, decreased endothelial-specific adherent junctions, and decreased contact of endothelial cells with mural cells. Protein kinase C delta and epsilon also appeared essential for vascular smooth muscle cell differentiation, since α-smooth muscle actin, a classical marker for vascular smooth muscle cells, was almost undetectable in double deficient embryonic aorta at E9.5. Subsequent qPCR analyses showed decreased VE-cadherin, Vegfr2, Cd31, Cdh2, Ets1, and Fli-1, among other angiogenesis related transcripts in double deficient embryos. Taken together, these data suggest for the first time an in vivo redundant role between members of the novel Protein Kinase C subfamily that allows for mutual compensation during mouse embryonic development, with vasculogenesis/angiogenesis as an obvious common function of these two Protein Kinase Cs. Protein Kinase C delta and epsilon might therefore be useful targets for inhibiting vasculo- and/or angiogenesis.

Interactions between voltage sensor and pore domains in a hERG K+ channel model from molecular simulations and the effects of a voltage sensor mutation.

PubMed

Colenso, Charlotte K; Sessions, Richard B; Zhang, Yi H; Hancox, Jules C; Dempsey, Christopher E

2013-06-24

The hERG K(+) channel is important for establishing normal electrical activity in the human heart. The channel's unique gating response to membrane potential changes indicates specific interactions between voltage sensor and pore domains that are poorly understood. In the absence of a crystal structure we constructed a homology model of the full hERG membrane domain and performed 0.5 μs molecular dynamics (MD) simulations in a hydrated membrane. The simulations identify potential interactions involving residues at the extracellular surface of S1 in the voltage sensor and at the N-terminal end of the pore helix in the hERG model. In addition, a diffuse interface involving hydrophobic residues on S4 (voltage sensor) and pore domain S5 of an adjacent subunit was stable during 0.5 μs of simulation. To assess the ability of the model to give insight into the effects of channel mutation we simulated a hERG mutant that contains a Leu to Pro substitution in the voltage sensor S4 helical segment (hERG L532P). Consistent with the retention of gated K(+) conductance, the L532P mutation was accommodated in the S4 helix with little disruption of helical structure. The mutation reduced the extent of interaction across the S4-S5 interface, suggesting a structural basis for the greatly enhanced deactivation rate in hERG L532P. The study indicates that pairwise comparison of wild-type and mutated channel models is a useful approach to interpreting functional data where uncertainty in model structures exist.

Hypothesized diprotomeric enzyme complex supported by stochastic modelling of palytoxin-induced Na/K pump channels

PubMed Central

Vilallonga, Gabriel D.; de Almeida, Antônio-Carlos G.; Ribeiro, Kelison T.; Campos, Sergio V. A.

2018-01-01

The sodium–potassium pump (Na+/K+ pump) is crucial for cell physiology. Despite great advances in the understanding of this ionic pumping system, its mechanism is not completely understood. We propose the use of a statistical model checker to investigate palytoxin (PTX)-induced Na+/K+ pump channels. We modelled a system of reactions representing transitions between the conformational substates of the channel with parameters, concentrations of the substates and reaction rates extracted from simulations reported in the literature, based on electrophysiological recordings in a whole-cell configuration. The model was implemented using the UPPAAL-SMC platform. Comparing simulations and probabilistic queries from stochastic system semantics with experimental data, it was possible to propose additional reactions to reproduce the single-channel dynamic. The probabilistic analyses and simulations suggest that the PTX-induced Na+/K+ pump channel functions as a diprotomeric complex in which protein–protein interactions increase the affinity of the Na+/K+ pump for PTX. PMID:29657808

Astronaut Sally K. Ride outside of shuttle mission simulator

NASA Image and Video Library

1983-05-26

S83-32890 (23 May 1983) --- Astronaut Sally K. Ride, STS-7 mission specialist, stands near the Shuttle Mission Simulator (SMS) in Johnson Space Center's (JSC) Mission Simulation and Training Facility with suit specialist Alan M. Rochford after simulation of various phases of the upcoming STS-7 flight. Photo credit: NASA

Epsilon Aur monitoring during predicted pulsation phase

NASA Astrophysics Data System (ADS)

Waagen, Elizabeth O.; Templeton, Matthew R.

2014-09-01

Dr. Robert Stencel (University of Denver Astronomy Program) has requested that AAVSO observers monitor epsilon Aurigae from now through the end of the observing season. "Studies of the long-term, out-of-eclipse photometry of this enigmatic binary suggest that intervals of coherent pulsation occur at roughly 1/3 of the 27.1-year orbital period. Kloppenborg, et al. noted that stable variation patterns develop at 3,200-day intervals' implying that 'the next span of dates when such events might happen are circa JD ~2457000 (2014 December)'. "These out-of-eclipse light variations often have amplitudes of ~0.1 magnitude in U, and ~0.05 in V, with characteristic timescales of 60-100 days. The AAVSO light curve data to the present may indicate that this coherent phenomenon has begun, but we encourage renewed efforts by observers...to help deduce whether these events are internal to the F star, or externally-driven by tidal interaction with the companion star." Nightly observations or one observation every few days (CCD/PEP/DSLR, VUBR (amplitude too small for visual)) are requested. Finder charts with sequence may be created using the AAVSO Variable Star Plotter (http://www.aavso.org/vsp). Observations should be submitted to the AAVSO International Database. Epsilon Aur was the subject of major international campaigns and the AAVSO's Citizen Sky project as it went through its 27.1-year eclipse in 2009-2011. Over 700 observers worldwide submitted over 20,000 multicolor observations to the AAVSO International Database for this project. Much information on eps Aur is available from the AAVSO, including material on the Citizen Sky website (http://www.aavso.org/epsilon-aurigae and http://www.citizensky.org/content/star-our-project). The Journal of the AAVSO, Volume 40, No. 2 (2012) was devoted to discussion of and research results from this event. See full Alert Notice for more details and observations.

Mechanisms of astrocytic K(+) clearance and swelling under high extracellular K(+) concentrations.

PubMed

Murakami, Shingo; Kurachi, Yoshihisa

2016-03-01

In response to the elevation of extracellular K(+) concentration ([K(+)]out), astrocytes clear excessive K(+) to maintain conditions necessary for neural activity. K(+) clearance in astrocytes occurs via two processes: K(+) uptake and K(+) spatial buffering. High [K(+)]out also induces swelling in astrocytes, leading to edema and cell death in the brain. Despite the importance of astrocytic K(+) clearance and swelling, the underlying mechanisms remain unclear. Here, we report results from a simulation analysis of astrocytic K(+) clearance and swelling. Astrocyte models were constructed by incorporating various mechanisms such as intra/extracellular ion concentrations of Na(+), K(+), and Cl(-), cell volume, and models of Na,K-ATPase, Na-K-Cl cotransporter (NKCC), K-Cl cotransporter, inwardly-rectifying K(+) (KIR) channel, passive Cl(-) current, and aquaporin channel. The simulated response of astrocyte models under the uniform distribution of high [K(+)]out revealed significant contributions of NKCC and Na,K-ATPase to increases of intracellular K(+) and Cl(-) concentrations, and swelling. Moreover, we found that, under the non-uniform distribution of high [K(+)]out, KIR channels localized at synaptic clefts absorbed excess K(+) by depolarizing the equivalent potential of K(+) (E K) above membrane potential, while K(+) released through perivascular KIR channels was enhanced by hyperpolarizing E K and depolarizing membrane potential. Further analysis of simulated drug effects revealed that astrocyte swelling was modulated by blocking each of the ion channels and transporters. Our simulation analysis revealed controversial mechanisms of astrocytic K(+) clearance and swelling resulting from complex interactions among ion channels and transporters.

Simulations and model of the nonlinear Richtmyer–Meshkov instability

DOE PAGES

Dimonte, Guy; Ramaprabhu, P.

2010-01-21

The nonlinear evolution of the Richtmyer-Meshkov (RM) instability is investigated using numerical simulations with the FLASH code in two-dimensions (2D). The purpose of the simulations is to develop an empiricial nonlinear model of the RM instability that is applicable to inertial confinement fusion (ICF) and ejecta formation, namely, at large Atwood number A and scaled initial amplitude kh o (k ≡ wavenumber) of the perturbation. The FLASH code is first validated with a variety of RM experiments that evolve well into the nonlinear regime. They reveal that bubbles stagnate when they grow by an increment of 2/k and that spikesmore » accelerate for A > 0.5 due to higher harmonics that focus them. These results are then compared with a variety of nonlinear models that are based on potential flow. We find that the models agree with simulations for moderate values of A < 0.9 and kh o< 1, but not for the larger values that characterize ICF and ejecta formation. We thus develop a new nonlinear empirical model that captures the simulation results consistent with potential flow for a broader range of A and kh o. Our hope is that such empirical models concisely capture the RM simulations and inspire more rigorous solutions.« less

Broadband perfect infrared absorption by tuning epsilon-near-zero and epsilon-near-pole resonances of multilayer ITO nanowires.

PubMed

Zhou, Kun; Cheng, Qiang; Song, Jinlin; Lu, Lu; Jia, Zhihao; Li, Junwei

2018-01-01

We numerically investigate the broadband perfect infrared absorption by tuning epsilon-near-zero (ENZ) and epsilon-near-pole (ENP) resonances of multilayer indium tin oxide nanowires (ITO NWs). The monolayer ITO NWs array shows intensive absorption at ENZ and ENP wavelengths for p polarization, while only at the ENP wavelength for s polarization. Moreover, the ENP resonances are almost omnidirectional and the ENZ resonances are angularly dependent. Therefore, the absorption bandwidth is broader for p polarization than that for s polarization when polarized waves are incident obliquely. The ENZ resonances can be tuned by altering the doping concentration and volume filling factor of ITO NWs. However, the ENP resonances only can be tuned by changing the doping concentration of ITO NWs, and volume filling factor impacts little on the ENP resonances. Based on the strong absorption properties of each layer at their own ENP and ENZ resonances, the tuned absorption of the bilayer ITO NWs with the different doping concentrations can be broader and stronger. Furthermore, multilayer ITO NWs can achieve broadband perfect absorption by controlling the doping concentration, volume filling factor, and length of the NWs in each layer. This study has the potential to apply to applications requiring efficient absorption and energy conversion.

150 kW Class Solar Electric Propulsion Spacecraft Power Architecture Model

NASA Technical Reports Server (NTRS)

Csank, Jeffrey T.; Aulisio, Michael V.; Loop, Benjamin

2017-01-01

The National Aeronautics and Space Administration (NASA) Solar Electric Propulsion Technology Demonstration Mission in conjunction with PC Krause and Associates has created a Simulink-based power architecture model for a 50 kilo-Watt (kW) solar electric propulsion system. NASA has extended this model to investigate 150 kW solar electric propulsion systems. Increasing the power system capability from 50 kW to 150 kW better aligns with the anticipated power requirements for Mars and other deep space explorations. The high-power solar electric propulsion capability has been identified as a critical part of NASAs future beyond-low-Earth-orbit for human-crewed exploration missions. This paper presents multiple 150 kW architectures, simulation results, and a discussion of their merits.

ASTEROSEISMOLOGY OF THE NEARBY SN II PROGENITOR RIGEL. II. {epsilon}-MECHANISM TRIGGERING GRAVITY-MODE PULSATIONS?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moravveji, Ehsan; Moya, Andres; Guinan, Edward F., E-mail: moravveji@iasbs.ac.ir

2012-04-10

The cores of luminous B- and A-type (BA) supergiant stars are the seeds of later core-collapse supernovae. Thus, constraining the near-core conditions in this class of stars can place tighter constraints on the size, mass, and chemical composition of supernova remnants. Asteroseismology of these massive stars is one possible approach into such investigations. Recently, Moravveji et al. in 2012 (hereafter Paper I) extracted 19 significant frequencies from a 6-year radial velocity monitoring of Rigel ({beta} Ori, B8 Ia). The periods they determined broadly range from 1.22 to 74.74 days. Based on our differentially rotating stellar structure and evolution model, Rigel,more » at its current evolutionary state, is undergoing core He burning and shell H burning. Linear fully non-adiabatic non-radial stability analyses result in the excitation of a dense spectrum of non-radial gravity-dominated mixed modes. The fundamental radial mode (l = 0) and its overtones are all stable. When the hydrogen-burning shell is located even partially in the radiative zone, a favorable condition for destabilization of g-modes through the so-called {epsilon}-mechanism becomes viable. Only those g-modes that have high relative amplitudes in the hydrogen-burning (radiative) zone can survive the strong radiative damping. From the entire observed range of variability periods of Rigel (found in Paper I), and based on our model, only those modes with periods ranging between 21 and 127 days can be theoretically explained by the {epsilon}-mechanism. The origin of the short-period variations (found in Paper I) still remains unexplained. Because Rigel is similar to other massive BA supergiants, we believe that the {epsilon}-mechanism may be able to explain the long-period variations in {alpha} Cygni class of pulsating stars.« less

Analysis of flow disturbance in a stenosed carotid artery bifurcation using two-equation transitional and turbulence models.

PubMed

Tan, F P P; Soloperto, G; Bashford, S; Wood, N B; Thom, S; Hughes, A; Xu, X Y

2008-12-01

In this study, newly developed two-equation turbulence models and transitional variants are employed for the prediction of blood flow patterns in a diseased carotid artery where the growth, progression, and structure of the plaque at rupture are closely linked to low and oscillating wall shear stresses. Moreover, the laminar-turbulent transition in the poststenotic zone can alter the separation zone length, wall shear stress, and pressure distribution over the plaque, with potential implications for stresses within the plaque. Following the validation with well established experimental measurements and numerical studies, a magnetic-resonance (MR) image-based model of the carotid bifurcation with 70% stenosis was reconstructed and simulated using realistic patient-specific conditions. Laminar flow, a correlation-based transitional version of Menter's hybrid k-epsilon/k-omega shear stress transport (SST) model and its "scale adaptive simulation" (SAS) variant were implemented in pulsatile simulations from which analyses of velocity profiles, wall shear stress, and turbulence intensity were conducted. In general, the transitional version of SST and its SAS variant are shown to give a better overall agreement than their standard counterparts with experimental data for pulsatile flow in an axisymmetric stenosed tube. For the patient-specific case reported, the wall shear stress analysis showed discernable differences between the laminar flow and SST transitional models but virtually no difference between the SST transitional model and its SAS variant.

Progress in hypersonic turbulence modeling

NASA Technical Reports Server (NTRS)

Wilcox, David C.

1991-01-01

A compressibility modification is developed for k-omega (Wilcox, 1988) and k-epsilon (Jones and Launder, 1972) models, that is similar to those of Sarkar et al. (1989) and Zeman (1990). Results of the perturbation solution for the compressible wall layer demonstrate why the Sarkar and Zeman terms yield inaccurate skin friction for the flat-plate boundary layer. A new compressibility term is developed which permits accurate predictions of the compressible mixing layer, flat-plate boundary layer, and shock separated flows.

Providing a Virtual Initiation for Epsilon Pi Tau

ERIC Educational Resources Information Center

Sanders, Craig S.; Griffin, Kathryn M.

2005-01-01

One of the requirements of the Epsilon Pi Tau (EPT) initiation is the apprentice has to physically be at the initiation (EPT, 2004). Since the majority of nontraditional students and working professionals are physically removed from an initiation site, they have missed the opportunity to join EPT. On 8 April, 2005, the Beta Mu Chapter of The…

Simulations of the Fe K α Energy Spectra from Gravitationally Microlensed Quasars

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krawczynski, H.; Chartas, G., E-mail: krawcz@wustl.edu

The analysis of the Chandra X-ray observations of the gravitationally lensed quasar RX J1131−1231 revealed the detection of multiple and energy-variable spectral peaks. The spectral variability is thought to result from the microlensing of the Fe K α emission, selectively amplifying the emission from certain regions of the accretion disk with certain effective frequency shifts of the Fe K α line emission. In this paper, we combine detailed simulations of the emission of Fe K α photons from the accretion disk of a Kerr black hole with calculations of the effect of gravitational microlensing on the observed energy spectra. Themore » simulations show that microlensing can indeed produce multiply peaked energy spectra. We explore the dependence of the spectral characteristics on black hole spin, accretion disk inclination, corona height, and microlensing amplification factor and show that the measurements can be used to constrain these parameters. We find that the range of observed spectral peak energies of QSO RX J1131−1231 can only be reproduced for black hole inclinations exceeding 70° and for lamppost corona heights of less than 30 gravitational radii above the black hole. We conclude by emphasizing the scientific potential of studies of the microlensed Fe K α quasar emission and the need for more detailed modeling that explores how the results change for more realistic accretion disk and corona geometries and microlensing magnification patterns. A full analysis should furthermore model the signal-to-noise ratio of the observations and the resulting detection biases.« less

Pressure Loss Predictions of the Reactor Simulator Subsystem at NASA GRC

NASA Technical Reports Server (NTRS)

Reid, Terry V.

2015-01-01

Testing of the Fission Power System (FPS) Technology Demonstration Unit (TDU) is being conducted at NASA GRC. The TDU consists of three subsystems: the Reactor Simulator (RxSim), the Stirling Power Conversion Unit (PCU), and the Heat Exchanger Manifold (HXM). An Annular Linear Induction Pump (ALIP) is used to drive the working fluid. A preliminary version of the TDU system (which excludes the PCU for now), is referred to as the RxSim subsystem and was used to conduct flow tests in Vacuum Facility 6 (VF 6). In parallel, a computational model of the RxSim subsystem was created based on the CAD model and was used to predict loop pressure losses over a range of mass flows. This was done to assess the ability of the pump to meet the design intent mass flow demand. Measured data indicates that the pump can produce 2.333 kg/sec of flow, which is enough to supply the RxSim subsystem with a nominal flow of 1.75 kg/sec. Computational predictions indicated that the pump could provide 2.157 kg/sec (using the Spalart-Allmaras turbulence model), and 2.223 kg/sec (using the k-? turbulence model). The computational error of the predictions for the available mass flow is -0.176 kg/sec (with the S-A turbulence model) and -0.110 kg/sec (with the k-epsilon turbulence model) when compared to measured data.

K-distribution models for gas mixtures in hypersonic nonequilibrium flows

NASA Astrophysics Data System (ADS)

Bansal, Ankit

Calculation of nonequilibrium radiation field in plasmas around a spacecraft entering into an atmosphere at hypersonic velocities is a very complicated and computationally expensive task. The objective of this Dissertation is to collect state-of-the art spectroscopic data for the evaluation of spectral absorption and emission coefficients of atomic and molecular gases, develop efficient and accurate spectral models and databases, and study the effect of radiation on wall heat loads and flowfield around the spacecraft. The most accurate simulation of radiative transport in the shock layer requires calculating the gas properties at a large number of wavelengths and solving the Radiative Transfer Equation (RTE) in a line-by-line (LBL) fashion, which is prohibitively expensive for coupled simulations. A number of k-distribution based spectral models are developed for atomic lines, continuum and molecular bands that allow efficient evaluation of radiative properties and heat loads in hypersonic shock layer plasma. Molecular radiation poses very different challenges than atomic radiation. A molecular spectrum is governed by simultaneous electronic, vibrational and rotational transitions, making the spectrum very strongly dependent on wavelength. In contrast to an atomic spectrum, where line wings play a major role in heat transfer, most of the heat transfer in molecular spectra occurs near line centers. As the first step, k-distribution models are developed separately for atomic and molecular species, taking advantage of the fact that in the Earth's atmosphere the radiative field is dominated by atomic species (N and O) and in Titan's and Mars' atmospheres molecular bands of CN and CO are dominant. There are a number of practical applications where both atomic and molecular species are present, for example, the vacuum-ultra-violet spectrum during Earth's reentry conditions is marked by emission from atomic bound-bound lines and continuum and simultaneous absorption by

Epsilon Aurigae. [eclipsing binary system

NASA Technical Reports Server (NTRS)

Chapman, R. D.

1985-01-01

In April 1984, fourth contact ended the two year long eclipse of Epsilon Aurigae. An astrometric study of the study of the system was carried out by Van de kamp (1978) leading to the conclusion that the orbit is seen very close to edge on. The eclipse was monitored by a number of groups from the ground and from spacecraft such as the IUE. Ultraviolet observations of the system from IUE have thrown new light on the nature of the system that led to the conclusion that the secondary object is probably a cold, dusty accretion disk surrounding a star that is completely hidden inside the disk.

Epsilon aminocaproic acid (EACA) myopathy.

PubMed Central

Lane, R. J.; McLelland, N. J.; Martin, A. M.; Mastaglia, F. L.

1979-01-01

Two female patients developed a severe, painful proximal myopathy after taking 18--30 g of epsilon-aminocaproic acid daily for 5 weeks. Marked elevations of serum aminotransferases, creatine kinase and aldolase levels were found and the first patient had electromyographic and muscle biopsy changes of an acute monophasic, necrotising myopathy at the height of the illness. Resolution occurred in both cases on stopping the drug and the second patient had no electromyographic or muscle biopsy abnormalities 3 weeks later. Only 2 recognized cases of the condition have been reported previously but a review of the literature revealed several other possible examples. Images Fig. 1 PMID:471867

Novel self-assembled amphiphilic poly(epsilon-caprolactone)-grafted-poly(vinyl alcohol) nanoparticles: hydrophobic and hydrophilic drugs carrier nanoparticles.

PubMed

Sheikh, Faheem A; Barakat, Nasser A M; Kanjwal, Muzafar A; Aryal, Santosh; Khil, Myung Seob; Kim, Hak-Yong

2009-03-01

In the present study, we have aimed to produce nanoparticles (NPs) possessing the capability of carrying both of the hydrophobic and hydrophilic drugs and reveal significant release for both drug types. Poly(epsilon-caprolactone) (PCL) grafted poly(vinyl alcohol) (PVA) copolymer (PCL-g-PVA) has been prepared and shaped in nano-particulate form to be adequate for carrying the drugs. Stannous octoate (Sn(II)Oct(2)) was used to catalyze PVA and epsilon-caprolactone monomer to chemically bond. Moreover, this catalyst enhanced side chain polymerization reaction for the utilized epsilon-caprolactone monomer to form poly(epsilon-caprolactone) (PCL). The formed PCL was attached as branches with PVA backbone. (1)H NMR has confirmed formation of PCL and grafting of PVA by this new polymer. Moreover, the vibration modes in the functional groups of PCL-g-PVA have been detected by FT-IR. The thermal alteration in the grafted polymer was checked by TGA analysis. The successfully synthesized grafted copolymer was able to self-aggregate into NPs by direct dialysis method. The size, morphology and charges associated with the obtained NPs were analyzed by DLS, TEM and ELS, respectively. PCL-g-PVA NPs were investigated as drug carrier models for hydrophobic and hydrophilic anti cancer drugs; paclitaxel and doxorubicin. In vitro drug release experiments were conducted; the loaded NPs reveal continuous and sustained release form for both drugs, up to 20 and 15 days for paclitaxel and doxorubicin, respectively. However, in a case of using pure drugs only, both drugs completely released within 1-2 h. The overall obtained results strongly recommend the use these novel NPs in future drug delivery systems.

How to obtain accurate resist simulations in very low-k1 era?

NASA Astrophysics Data System (ADS)

Chiou, Tsann-Bim; Park, Chan-Ha; Choi, Jae-Seung; Min, Young-Hong; Hansen, Steve; Tseng, Shih-En; Chen, Alek C.; Yim, Donggyu

2006-03-01

A procedure for calibrating a resist model iteratively adjusts appropriate parameters until the simulations of the model match the experimental data. The tunable parameters may include the shape of the illuminator, the geometry and transmittance/phase of the mask, light source and scanner-related parameters that affect imaging quality, resist process control and most importantly the physical/chemical factors in the resist model. The resist model can be accurately calibrated by measuring critical dimensions (CD) of a focus-exposure matrix (FEM) and the technique has been demonstrated to be very successful in predicting lithographic performance. However, resist model calibration is more challenging in the low k1 (<0.3) regime because numerous uncertainties, such as mask and resist CD metrology errors, are becoming too large to be ignored. This study demonstrates a resist model calibration procedure for a 0.29 k1 process using a 6% halftone mask containing 2D brickwall patterns. The influence of different scanning electron microscopes (SEM) and their wafer metrology signal analysis algorithms on the accuracy of the resist model is evaluated. As an example of the metrology issue of the resist pattern, the treatment of a sidewall angle is demonstrated for the resist line ends where the contrast is relatively low. Additionally, the mask optical proximity correction (OPC) and corner rounding are considered in the calibration procedure that is based on captured SEM images. Accordingly, the average root-mean-square (RMS) error, which is the difference between simulated and experimental CDs, can be improved by considering the metrological issues. Moreover, a weighting method and a measured CD tolerance are proposed to handle the different CD variations of the various edge points of the wafer resist pattern. After the weighting method is implemented and the CD selection criteria applied, the RMS error can be further suppressed. Therefore, the resist CD and process window can

Simulator - Ride, Sally K.

NASA Image and Video Library

1983-05-24

S83-32569 (23 May 1983) --- A preview of NASA?s next spaceflight is provided by this scene in the Johnson Space Center?s Shuttle mission simulator (SMS) with four-fifths of the crew in the same stations they will be in for launch and landing phases of the Challenger?s second space mission. They are (left-right) Astronauts Robert L. Crippen, crew commander; Frederick H. Hauck, pilot; John M. Fabian and Dr. Sally K. Ride, mission specialists. Dr. Norman E. Thagard, a third mission specialist, is to be seated in the mid-deck area below the flight deck for launch and landing phases. Launch is now scheduled for June 18.

Computational studies of horizontal axis wind turbines in high wind speed condition using advanced turbulence models

NASA Astrophysics Data System (ADS)

Benjanirat, Sarun

Next generation horizontal-axis wind turbines (HAWTs) will operate at very high wind speeds. Existing engineering approaches for modeling the flow phenomena are based on blade element theory, and cannot adequately account for 3-D separated, unsteady flow effects. Therefore, researchers around the world are beginning to model these flows using first principles-based computational fluid dynamics (CFD) approaches. In this study, an existing first principles-based Navier-Stokes approach is being enhanced to model HAWTs at high wind speeds. The enhancements include improved grid topology, implicit time-marching algorithms, and advanced turbulence models. The advanced turbulence models include the Spalart-Allmaras one-equation model, k-epsilon, k-o and Shear Stress Transport (k-o-SST) models. These models are also integrated with detached eddy simulation (DES) models. Results are presented for a range of wind speeds, for a configuration termed National Renewable Energy Laboratory Phase VI rotor, tested at NASA Ames Research Center. Grid sensitivity studies are also presented. Additionally, effects of existing transition models on the predictions are assessed. Data presented include power/torque production, radial distribution of normal and tangential pressure forces, root bending moments, and surface pressure fields. Good agreement was obtained between the predictions and experiments for most of the conditions, particularly with the Spalart-Allmaras-DES model.

Metamaterial-based lossy anisotropic epsilon-near-zero medium for energy collimation

NASA Astrophysics Data System (ADS)

Shen, Nian-Hai; Zhang, Peng; Koschny, Thomas; Soukoulis, Costas M.

2016-06-01

A lossy anisotropic epsilon-near-zero (ENZ) medium may lead to a counterintuitive phenomenon of omnidirectional bending-to-normal refraction [S. Feng, Phys. Rev. Lett. 108, 193904 (2012), 10.1103/PhysRevLett.108.193904], which offers a fabulous strategy for energy collimation and energy harvesting. Here, in the scope of effective medium theory, we systematically investigate two simple metamaterial configurations, i.e., metal-dielectric-layered structures and the wire medium, to explore the possibility of fulfilling the conditions of such an anisotropic lossy ENZ medium by playing with materials' parameters. Both realistic metamaterial structures and their effective medium equivalences have been numerically simulated, and the results are in excellent agreement with each other. Our study provides clear guidance and therefore paves the way towards the search for proper designs of anisotropic metamaterials for a decent effect of energy collimation and wave-front manipulation.

Plant model of KIPT neutron source facility simulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cao, Yan; Wei, Thomas Y.; Grelle, Austin L.

2016-02-01

Argonne National Laboratory (ANL) of the United States and Kharkov Institute of Physics and Technology (KIPT) of Ukraine are collaborating on constructing a neutron source facility at KIPT, Kharkov, Ukraine. The facility has 100-kW electron beam driving a subcritical assembly (SCA). The electron beam interacts with a natural uranium target or a tungsten target to generate neutrons, and deposits its power in the target zone. The total fission power generated in SCA is about 300 kW. Two primary cooling loops are designed to remove 100-kW and 300-kW from the target zone and the SCA, respectively. A secondary cooling system ismore » coupled with the primary cooling system to dispose of the generated heat outside the facility buildings to the atmosphere. In addition, the electron accelerator has a low efficiency for generating the electron beam, which uses another secondary cooling loop to remove the generated heat from the accelerator primary cooling loop. One of the main functions the KIPT neutron source facility is to train young nuclear specialists; therefore, ANL has developed the KIPT Neutron Source Facility Simulator for this function. In this simulator, a Plant Control System and a Plant Protection System were developed to perform proper control and to provide automatic protection against unsafe and improper operation of the facility during the steady-state and the transient states using a facility plant model. This report focuses on describing the physics of the plant model and provides several test cases to demonstrate its capabilities. The plant facility model uses the PYTHON script language. It is consistent with the computer language of the plant control system. It is easy to integrate with the simulator without an additional interface, and it is able to simulate the transients of the cooling systems with system control variables changing on real-time.« less

Summary of EASM Turbulence Models in CFL3D With Validation Test Cases

NASA Technical Reports Server (NTRS)

Rumsey, Christopher L.; Gatski, Thomas B.

2003-01-01

This paper summarizes the Explicit Algebraic Stress Model in k-omega form (EASM-ko) and in k-epsilon form (EASM-ke) in the Reynolds-averaged Navier-Stokes code CFL3D. These models have been actively used over the last several years in CFL3D, and have undergone some minor modifications during that time. Details of the equations and method for coding the latest versions of the models are given, and numerous validation cases are presented. This paper serves as a validation archive for these models.

150 kW Class Solar Electric Propulsion Spacecraft Power Architecture Model

NASA Technical Reports Server (NTRS)

Csank, Jeffrey T.; Aulisio, Michael V.; Loop, Benjamin

2017-01-01

The National Aeronautics and Space Administration (NASA) Solar Electric Propulsion Technology Demonstration Mission (SEP TDM), in conjunction with PC Krause and Associates, has created a Simulink-based power architecture model for a 50 kilo-Watt (kW) solar electric propulsion system. NASA has extended this model to investigate 150 kW solar electric propulsion systems. Increasing the power capability to 150 kW is an intermediate step to the anticipated power requirements for Mars and other deep space applications. The high-power solar electric propulsion capability has been identified as a critical part of NASA’s future beyond-low-Earth-orbit for human-crewed exploration missions. This paper presents four versions of a 150 kW architecture, simulation results, and a discussion of their merits.

Phosphorylation of h1 Calponin by PKC epsilon may contribute to facilitate the contraction of uterine myometrium in mice during pregnancy and labor

PubMed Central

2012-01-01

Background The timely onset of powerful uterine contractions during parturition occurs through thick and thin filament interactions, similar to other smooth muscle tissues. Calponin is one of the thin filament proteins. Phosphorylation of calponin induced by PKC-epsilon can promote the contraction of vascular smooth muscle. While the mechanism by which calponin regulates the contraction of pregnant myometrium has rarely been explored. Here, we explore whether PKC-epsilon/h1 calponin pathway contribute to regulation of myometrial contractility and development of parturition. Methods We detected the expression of h1 calponin, phosphorylated h1 calponin, PKC-epsilon and phosphorylated PKC-epsilon in the different stages of mice during pregnancy and in labor by the method of western blot and recorded the contraction activity of myometrium strips at the 19th day during pregnancy with different treatments by the organ bath experiments. Results The level of the four proteins including h1 calponin, phosphorylated h1 calponin, PKC-epsilon and phosphorylated PKC-epsilon was significantly increased in pregnant mice myometrium as compared with that in nonpregnant mice. The ratios of phosphorylated h1 calponin/h1 calponin and phosphorylated PKC-epsilon/PKC-epsilon were reached the peak after the onset of labor in myometrium in the mice. After the treatment of more than 10(9-) mol/L Psi-RACK (PKC-epsilon activator), the contractility of myometrium strips from mice was reinforced and the level of phosphorylated h1 calponin increased at the same time which could be interrupted by the specific inhibitor of PKC-epsilon. Meanwhile, the change of the ratio of phosphorylated h1 calponin/h1 calponin was consistent with that of contraction force of mice myometrium strips. Conclusions These data suggest that in mice myometrium, phosphorylation of h1 calponin induced by the PKC-epsilon might facilitate the contraction of uterine in labor and regulate pregnant myometrial contractility. PMID

Verification and Validation of the k-kL Turbulence Model in FUN3D and CFL3D Codes

NASA Technical Reports Server (NTRS)

Abdol-Hamid, Khaled S.; Carlson, Jan-Renee; Rumsey, Christopher L.

2015-01-01

The implementation of the k-kL turbulence model using multiple computational uid dy- namics (CFD) codes is reported herein. The k-kL model is a two-equation turbulence model based on Abdol-Hamid's closure and Menter's modi cation to Rotta's two-equation model. Rotta shows that a reliable transport equation can be formed from the turbulent length scale L, and the turbulent kinetic energy k. Rotta's equation is well suited for term-by-term mod- eling and displays useful features compared to other two-equation models. An important di erence is that this formulation leads to the inclusion of higher-order velocity derivatives in the source terms of the scale equations. This can enhance the ability of the Reynolds- averaged Navier-Stokes (RANS) solvers to simulate unsteady ows. The present report documents the formulation of the model as implemented in the CFD codes Fun3D and CFL3D. Methodology, veri cation and validation examples are shown. Attached and sepa- rated ow cases are documented and compared with experimental data. The results show generally very good comparisons with canonical and experimental data, as well as matching results code-to-code. The results from this formulation are similar or better than results using the SST turbulence model.

Comparison of wavefront sensor models for simulation of adaptive optics.

PubMed

Wu, Zhiwen; Enmark, Anita; Owner-Petersen, Mette; Andersen, Torben

2009-10-26

The new generation of extremely large telescopes will have adaptive optics. Due to the complexity and cost of such systems, it is important to simulate their performance before construction. Most systems planned will have Shack-Hartmann wavefront sensors. Different mathematical models are available for simulation of such wavefront sensors. The choice of wavefront sensor model strongly influences computation time and simulation accuracy. We have studied the influence of three wavefront sensor models on performance calculations for a generic, adaptive optics (AO) system designed for K-band operation of a 42 m telescope. The performance of this AO system has been investigated both for reduced wavelengths and for reduced r(0) in the K band. The telescope AO system was designed for K-band operation, that is both the subaperture size and the actuator pitch were matched to a fixed value of r(0) in the K-band. We find that under certain conditions, such as investigating limiting guide star magnitude for large Strehl-ratios, a full model based on Fraunhofer propagation to the subimages is significantly more accurate. It does however require long computation times. The shortcomings of simpler models based on either direct use of average wavefront tilt over the subapertures for actuator control, or use of the average tilt to move a precalculated point spread function in the subimages are most pronounced for studies of system limitations to operating parameter variations. In the long run, efficient parallelization techniques may be developed to overcome the problem.

CMG–Pol epsilon dynamics suggests a mechanism for the establishment of leading-strand synthesis in the eukaryotic replisome

PubMed Central

Janska, Agnieszka; Goswami, Panchali; Renault, Ludovic; Abid Ali, Ferdos; Kotecha, Abhay; Costa, Alessandro

2017-01-01

The replisome unwinds and synthesizes DNA for genome duplication. In eukaryotes, the Cdc45–MCM–GINS (CMG) helicase and the leading-strand polymerase, Pol epsilon, form a stable assembly. The mechanism for coupling DNA unwinding with synthesis is starting to be elucidated, however the architecture and dynamics of the replication fork remain only partially understood, preventing a molecular understanding of chromosome replication. To address this issue, we conducted a systematic single-particle EM study on multiple permutations of the reconstituted CMG–Pol epsilon assembly. Pol epsilon contains two flexibly tethered lobes. The noncatalytic lobe is anchored to the motor of the helicase, whereas the polymerization domain extends toward the side of the helicase. We observe two alternate configurations of the DNA synthesis domain in the CMG-bound Pol epsilon. We propose that this conformational switch might control DNA template engagement and release, modulating replisome progression. PMID:28373564

Expression and biological effects of high levels of serum IgE in epsilon heavy chain transgenic mice.

PubMed

Adamczewski, M; Köhler, G; Lamers, M C

1991-03-01

We have generated and examined transgenic mice carrying a rearranged immunoglobulin transgene coding for the heavy chain of an IgE antibody. These mice produce the secreted form of the recombinant epsilon heavy chain. Serum IgE levels were increased at least 100-fold over control values. Transgenic epsilon mRNA was detected in spleen and thymus, not in liver and heart. Transgenic epsilon production in vitro was slightly up-regulated by T cells, but not affected by interleukin 4 in vitro or Nippostrongylus infestation in vivo. The B cell and T cell compartments and antigen-specific IgE, IgG1 and IgM responses as well as the increase in endogenous IgE after Nippostrongylus infestation in transgenic mice were normal. These data indicate that the presence of high levels of transgenic IgE did not induce class-specific suppressive mechanisms. Transgenic IgE bound to Fc epsilon receptor type I and Fc epsilon receptor type II and mediated histamine release from mast cells in vitro and an allergic skin reaction in vivo. It inhibited an ovalbumin-specific skin reaction in ovalbumin-immunized transgenic mice only during the initial phases of the immune response. This result has a bearing on the feasibility of immune therapy of allergic diseases with substances that block binding of IgE to its receptors.

Epsilon-aminocaproic acid influence in postoperative [corrected] bleeding and hemotransfusion [corrected] in mitral valve surgery.

PubMed

Benfatti, Ricardo Ádala; Carli, Amanda Ferreira; Silva, Guilherme Viotto Rodrigues da; Dias, Amaury Edgardo Mont'serrat Ávila Souza; Goldiano, José Anderson; Pontes, José Carlos Dorsa Vieira

2010-01-01

The epsilon aminocaproic acid is an antifibrinolytic used in cardiovascular surgery to inhibit the fibrinolysis and to reduce the bleeding after CPB. [corrected] To analyze the influence of the using of epsilon aminocaproic acid in the bleeding and in red-cell transfusion requirement in the first twenty-four hours postoperative of mitral valve surgery. Prospective studying, forty-two patients, randomized and divided in two equal groups: group #1 control and group #2--epsilon aminocaproic acid. In Group II were infused five grams of EACA in the induction of anesthesia, after full heparinization, CPB perfusate after reversal of heparin and one hour after the surgery, totaling 25 grams. In group I, saline solution was infused only in those moments. Group #1 showed average bleeding volume of 633.57 ± 305,7 ml, and Group #2, an average of 308.81 ± 210.1 ml, with significant statistic difference (P = 0.0003). Average volume of red-cell transfusion requirement in Groups 1 and 2 was, respectively, 942.86 ± 345.79 ml and 214.29 ± 330.58 ml, with significant difference (P < 0.0001). The epsilon aminocaproic acid was able to reduce the bleeding volume and the red-cell transfusion requirement in the immediate postoperative of patients submitted to mitral valve surgery.

Biodistribution and catabolism of 18F-labelled isopeptide N(epsilon)-(gamma-glutamyl)-L-lysine.

PubMed

Hultsch, C; Bergmann, R; Pawelke, B; Pietzsch, J; Wuest, F; Johannsen, B; Henle, T

2005-12-01

Isopeptide bonds between the epsilon-amino group of lysine and the gamma-carboxamide group of glutamine are formed during strong heating of pure proteins or, more important, by enzymatic reaction mediated by transglutaminases. Despite the wide use of a microbial transglutaminase in food biotechnology, up to now little is known about the metabolic fate of the isopeptide N(epsilon)-(gamma-glutamyl)-L-lysine. In the present study, N-succinimidyl-4-[(18)F]fluorobenzoate was used to modify N(epsilon)-(gamma-glutamyl)-L-lysine at each of its two alpha-amino groups, resulting in the 4-[(18)F]fluorobenzoylated derivatives, for which biodistribution, catabolism, and elimination were investigated in male Wistar rats. A significant different biochemical behavior of the two labelled isopeptides was observed in terms of in vitro stability, in vivo metabolism as well as biodistribution. The results suggest that the metabolic fate of isopeptides is likely to be dependent on how they are reabsorbed - free or peptide bound.

CFD simulation of an unbaffled stirred tank reactor driven by a magnetic rod: assessment of turbulence models.

PubMed

Li, Jiajia; Deng, Baoqing; Zhang, Bing; Shen, Xiuzhong; Kim, Chang Nyung

2015-01-01

A simulation of an unbaffled stirred tank reactor driven by a magnetic stirring rod was carried out in a moving reference frame. The free surface of unbaffled stirred tank was captured by Euler-Euler model coupled with the volume of fluid (VOF) method. The re-normalization group (RNG) k-ɛ model, large eddy simulation (LES) model and detached eddy simulation (DES) model were evaluated for simulating the flow field in the stirred tank. All turbulence models can reproduce the tangential velocity in an unbaffled stirred tank with a rotational speed of 150 rpm, 250 rpm and 400 rpm, respectively. Radial velocity is underpredicted by the three models. LES model and RNG k-ɛ model predict the better tangential velocity and axial velocity, respectively. RNG k-ɛ model is recommended for the simulation of the flow in an unbaffled stirred tank with magnetic rod due to its computational effort.

Comparison of experiment with calculations using curvature-corrected zero and two equation turbulence models for a two-dimensional U-duct

NASA Astrophysics Data System (ADS)

Monson, D. J.; Seegmiller, H. L.; McConnaughey, P. K.

1990-06-01

In this paper experimental measurements are compared with Navier-Stokes calculations using seven different turbulence models for the internal flow in a two-dimensional U-duct. The configuration is representative of many internal flows of engineering interst that experience strong curvature. In an effort to improve agreement, this paper tests several versions of the two-equation k-epsilon turbulence model including the standard version, an extended version with a production range time scale, and a version that includes curvature time scales. Each is tested in its high and low Reynolds number formulations. Calculations using these new models and the original mixing length model are compared here with measurements of mean and turbulence velocities, static pressure and skin friction in the U-duct at two Reynolds numbers. The comparisons show that only the low Reynolds number version of the extended k-epsilon model does a reasonable job of predicting the important features of this flow at both Reynolds numbers tested.

MEMS 3-DoF gyroscope design, modeling and simulation through equivalent circuit lumped parameter model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mian, Muhammad Umer, E-mail: umermian@gmail.com; Khir, M. H. Md.; Tang, T. B.

Pre-fabrication, behavioural and performance analysis with computer aided design (CAD) tools is a common and fabrication cost effective practice. In light of this we present a simulation methodology for a dual-mass oscillator based 3 Degree of Freedom (3-DoF) MEMS gyroscope. 3-DoF Gyroscope is modeled through lumped parameter models using equivalent circuit elements. These equivalent circuits consist of elementary components which are counterpart of their respective mechanical components, used to design and fabricate 3-DoF MEMS gyroscope. Complete designing of equivalent circuit model, mathematical modeling and simulation are being presented in this paper. Behaviors of the equivalent lumped models derived for themore » proposed device design are simulated in MEMSPRO T-SPICE software. Simulations are carried out with the design specifications following design rules of the MetalMUMPS fabrication process. Drive mass resonant frequencies simulated by this technique are 1.59 kHz and 2.05 kHz respectively, which are close to the resonant frequencies found by the analytical formulation of the gyroscope. The lumped equivalent circuit modeling technique proved to be a time efficient modeling technique for the analysis of complex MEMS devices like 3-DoF gyroscopes. The technique proves to be an alternative approach to the complex and time consuming couple field analysis Finite Element Analysis (FEA) previously used.« less

A 100 kW experimental wind turbine: Simulation of starting, overspeed, and shutdown characteristics

NASA Technical Reports Server (NTRS)

Gilbert, L. J.

1976-01-01

The ERDA/NASA 100 kW experimental wind turbine is modeled on a digital computer in order to study the performance of a wind turbine under operating conditions. Simulation studies of starting, overspeed, and shutdown performance were made. From these studies operating procedures, precautions, and limitations are prescribed.

Host response to intravenous injection of epsilon toxin in mouse model: a proteomic view.

PubMed

Kumar, Bhoj; Alam, Syed Imteyaz; Kumar, Om

2013-01-01

Epsilon toxin (ETX) is an extremely potent pore-forming toxin and a category B biological agent. ETX is a major virulence determinant of Clostridium perfringens toxinotypes B and D, and is implicated in pathogenesis of rapidly fatal economically important pulpy kidney disease in lambs caused by toxinotype D. Despite being a toxin, ETX can be utilized as a tool to target glutamatergic neurons and for drug delivery into the CNS. 2DE-MS approach was employed to elucidate the host response to ETX following intravenous injection in mouse model. In total, 136 proteins were identified either differentially expressed in brain (18) and kidney (33); showing specific interaction with ETX from lysates of brain (4), kidney (21), or from plasma (42); and urine markers (18) of intoxication. Differentially expressed proteins in kidney included those involved in calcium homeostasis and cytoskeletal organization. Proteins involved in ER and oxidative stress and energy metabolism also showed differential levels in the target tissue after ETX treatment. The known functions of the proteins differentially expressed and those interacting with ETX indicate involvement of interlinked pathways. This study provides first proteomic account of host response to ETX exposure providing clues to mechanism of toxicity and potential therapeutic targets. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Workshop on Computational Turbulence Modeling

NASA Technical Reports Server (NTRS)

1993-01-01

This document contains presentations given at Workshop on Computational Turbulence Modeling held 15-16 Sep. 1993. The purpose of the meeting was to discuss the current status and future development of turbulence modeling in computational fluid dynamics for aerospace propulsion systems. Papers cover the following topics: turbulence modeling activities at the Center for Modeling of Turbulence and Transition (CMOTT); heat transfer and turbomachinery flow physics; aerothermochemistry and computational methods for space systems; computational fluid dynamics and the k-epsilon turbulence model; propulsion systems; and inlet, duct, and nozzle flow.

The Effect of Neutral Winds on Simulated Inner Magnetospheric Electric Fields During the 17 March 2013 Storm

NASA Astrophysics Data System (ADS)

Chen, M.; Lemon, C.; Walterscheid, R. L.; Hecht, J. H.; Sazykin, S. Y.; Wolf, R.

2017-12-01

We investigate how neutral winds and particle precipitation affect the simulated development of electric fields including Sub-Auroral Polarization Streams (SAPS) during the 17 March 2013 storm. Our approach is to use the magnetically and electrically self-consistent Rice Convection Model - Equilibrium (RCM-E) to simulate the inner magnetospheric electric field. We use parameterized rates of whistler-generated electron pitch-angle scattering from Orlova and Shprits [JGR, 2014] that depend on equatorial radial distance, magnetic activity (Kp), and magnetic local time (MLT) outside the simulated plasmasphere. Inside the plasmasphere, parameterized scattering rates due to hiss [Orlova et al., GRL, 2014] are used. Ions are scattered at a fraction of strong pitch-angle scattering where the fraction is scaled by epsilon, the ratio of the gyroradius to the field-line radius of curvature, when epsilon is greater than 0.1. The electron and proton contributions to the auroral conductance in the RCM-E are calculated using the empirical Robinson et al. [JGR, 1987] and Galand and Richmond [JGR, 2001] equations, respectively. The "background" ionospheric conductance is based on parameters from the International Reference Ionosphere [Bilitza and Reinisch, JASR, 2008] but modified to include the effect of specified ionospheric troughs. Neutral winds are modeled by the empirical Horizontal Wind Model (HWM07) in the RCM-E. We compare simulated precipitating particle energy flux, E x B velocities with DMSP observations during the 17 March 2013 storm with and without the inclusion of neutral winds. Discrepancies between the simulations and observations will aid us in assessing needed improvements in the model.

Computational Study of the CC3 Impeller and Vaneless Diffuser Experiment

NASA Technical Reports Server (NTRS)

Kulkarni, Sameer; Beach, Timothy A.; Skoch, Gary J.

2013-01-01

Centrifugal compressors are compatible with the low exit corrected flows found in the high pressure compressor of turboshaft engines and may play an increasing role in turbofan engines as engine overall pressure ratios increase. Centrifugal compressor stages are difficult to model accurately with RANS CFD solvers. A computational study of the CC3 centrifugal impeller in its vaneless diffuser configuration was undertaken as part of an effort to understand potential causes of RANS CFD mis-prediction in these types of geometries. Three steady, periodic cases of the impeller and diffuser were modeled using the TURBO Parallel Version 4 code: 1) a k-epsilon turbulence model computation on a 6.8 million point grid using wall functions, 2) a k-epsilon turbulence model computation on a 14 million point grid integrating to the wall, and 3) a k-omega turbulence model computation on the 14 million point grid integrating to the wall. It was found that all three cases compared favorably to data from inlet to impeller trailing edge, but the k-epsilon and k-omega computations had disparate results beyond the trailing edge and into the vaneless diffuser. A large region of reversed flow was observed in the k-epsilon computations which extended from 70% to 100% span at the exit rating plane, whereas the k-omega computation had reversed flow from 95% to 100% span. Compared to experimental data at near-peak-efficiency, the reversed flow region in the k-epsilon case resulted in an under-prediction in adiabatic efficiency of 8.3 points, whereas the k-omega case was 1.2 points lower in efficiency.

ORIGIN OF LITHIUM ENRICHMENT IN K GIANTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kumar, Yerra Bharat; Reddy, Bacham E.; Lambert, David L.

In this Letter, we report on a low-resolution spectroscopic survey for Li-rich K giants among 2000 low-mass (M {<=} 3 M{sub sun}) giants spanning the luminosity range from below to above the luminosity of the clump. Fifteen new Li-rich giants including four super Li-rich K giants (log {epsilon}(Li) {>=}3.2) were discovered. A significant finding is that there is a concentration of Li-rich K giants at the luminosity of the clump or red horizontal branch. This new finding is partly a consequence of the fact that our low-resolution survey is the first large survey to include giants well below and abovemore » the red giant branch (RGB) bump and clump locations in the H-R diagram. Origin of the lithium enrichment may be plausibly attributed to the conversion of {sup 3}He via {sup 7}Be to {sup 7}Li by the Cameron-Fowler mechanism but the location for the onset of the conversion is uncertain. Two possible opportunities to effect this conversion are discussed: the bump in the first ascent of the RGB and the He-core flash at the tip of the RGB. The finite luminosity spread of the Li-rich giants serves to reject the idea that Li enhancement is, in general, a consequence of a giant swallowing a large planet.« less

A non-isotropic multiple-scale turbulence model

NASA Technical Reports Server (NTRS)

Chen, C. P.

1990-01-01

A newly developed non-isotropic multiple scale turbulence model (MS/ASM) is described for complex flow calculations. This model focuses on the direct modeling of Reynolds stresses and utilizes split-spectrum concepts for modeling multiple scale effects in turbulence. Validation studies on free shear flows, rotating flows and recirculating flows show that the current model perform significantly better than the single scale k-epsilon model. The present model is relatively inexpensive in terms of CPU time which makes it suitable for broad engineering flow applications.

DNase I hypersensitivity and epsilon-globin transcriptional enhancement are separable in locus control region (LCR) HS1 mutant human beta-globin YAC transgenic mice.

PubMed

Shimotsuma, Motoshi; Okamura, Eiichi; Matsuzaki, Hitomi; Fukamizu, Akiyoshi; Tanimoto, Keiji

2010-05-07

Expression of the five beta-like globin genes (epsilon, Ggamma, Agamma, delta, beta) in the human beta-globin locus depends on enhancement by the locus control region, which consists of five DNase I hypersensitive sites (5'HS1 through 5'HS5). We report here a novel enhancer activity in 5'HS1 that appears to be potent in transfected K562 cells. Deletion analyses identified a core activating element that bound to GATA-1, and a two-nucleotide mutation that disrupted GATA-1 binding in vitro abrogated 5'HS1 enhancer activity in transfection experiments. To determine the in vivo role of this GATA site, we generated multiple lines of human beta-globin YAC transgenic mice bearing the same two-nucleotide mutation. In the mutant mice, epsilon-, but not gamma-globin, gene expression in primitive erythroid cells was severely attenuated, while adult beta-globin gene expression in definitive erythroid cells was unaffected. Interestingly, DNaseI hypersensitivity near the 5'HS1 mutant sequence was eliminated in definitive erythroid cells, whereas it was only mildly affected in primitive erythroid cells. We therefore conclude that, although the GATA site in 5'HS1 is critical for efficient epsilon-globin gene expression, hypersensitive site formation per se is independent of 5'HS1 function, if any, in definitive erythroid cells.

Absence of Fc epsilonRI alpha chain results in upregulation of Fc gammaRIII-dependent mast cell degranulation and anaphylaxis. Evidence of competition between Fc epsilonRI and Fc gammaRIII for limiting amounts of FcR beta and gamma chains.

PubMed Central

Dombrowicz, D; Flamand, V; Miyajima, I; Ravetch, J V; Galli, S J; Kinet, J P

1997-01-01

In mouse mast cells, both Fc epsilonRI and Fc gammaRIII are alpha beta gamma2 tetrameric complexes in which different alpha chains confer IgE or IgG ligand recognition while the signaling FcR beta and gamma chains are identical. We used primarily noninvasive techniques (changes in body temperature, dye extravasation) to assess systemic anaphylactic responses in nonanesthetized wild-type, Fc epsilonRI alpha chain -/- and FcR gamma chain -/- mice. We confirm that systemic anaphylaxis in mice can be mediated largely through IgG1 and Fc gammaRIII and we provide direct evidence that these responses reflect activation of Fc gammaRIII rather than Fc gammaRI. Furthermore, we show that Fc gammaRIII-dependent responses are more intense in normal than in congenic mast cell-deficient KitW/KitW-v mice, indicating that Fc gammaRIII responses have mast cell-dependent and -independent components. Finally, we demonstrate that the upregulation of cell surface expression of Fc gammaRIII seen in Fc epsilonRI alpha chain -/- mice corresponds to an increased association of Fc gammaRIII alpha chains with FcR beta and gamma chains and is associated with enhanced Fc gammaRIII-dependent mast cell degranulation and systemic anaphylactic responses. Therefore, the phenotype of the Fc epsilonRI alpha chain -/- mice suggests that expression of Fc epsilonRI and Fc gammaRIII is limited by availability of the FcR beta and gamma chains and that, in normal mice, changes in the expression of one receptor (Fc epsilonRI) may influence the expression of functional responses dependent on the other (Fc gammaRIII). PMID:9062349

Statistical Inference in Hidden Markov Models Using k-Segment Constraints

PubMed Central

Titsias, Michalis K.; Holmes, Christopher C.; Yau, Christopher

2016-01-01

Hidden Markov models (HMMs) are one of the most widely used statistical methods for analyzing sequence data. However, the reporting of output from HMMs has largely been restricted to the presentation of the most-probable (MAP) hidden state sequence, found via the Viterbi algorithm, or the sequence of most probable marginals using the forward–backward algorithm. In this article, we expand the amount of information we could obtain from the posterior distribution of an HMM by introducing linear-time dynamic programming recursions that, conditional on a user-specified constraint in the number of segments, allow us to (i) find MAP sequences, (ii) compute posterior probabilities, and (iii) simulate sample paths. We collectively call these recursions k-segment algorithms and illustrate their utility using simulated and real examples. We also highlight the prospective and retrospective use of k-segment constraints for fitting HMMs or exploring existing model fits. Supplementary materials for this article are available online. PMID:27226674

High-Contrast Imaging of Epsilon Eridani with Ground-Based Instruments

NASA Technical Reports Server (NTRS)

Mizuki, T.; Yamada, T.; Carson, J. C.; Kuzuhara, M.; Nakagawa, T.; Nishikawa, J.; Sitko, M. L.; Kudo, T.; Kusakabe, N.; Hashimoto, J.;

Characterization and Modeling of Fine-Pitch Copper Ball Bonding on a Cu/Low- k Chip

NASA Astrophysics Data System (ADS)

Che, F. X.; Wai, L. C.; Zhang, Xiaowu; Chai, T. C.

2015-02-01

Cu ball bonding faces more challenges than Au ball bonding, for example, excessive deformation of the bond pad and damage of Cu/low- k structures, because of the much greater hardness of Cu free air balls. In this study, dynamic finite-element analysis (FEA) modeling with displacement control was developed to simulate the ball-bonding process. The three-dimensional (3D) FEA simulation results were confirmed by use of stress-measurement data, obtained by use of stress sensors built into the test chip. Stress comparison between two-dimensional (2D) and 3D FEA models showed the 2D plain strain model to be a reasonable and effective model for simulation of the ball-bonding process without loss of accuracy; it also saves computing resources. The 2D FEA model developed was then used in studies of a Cu/low- k chip to find ways of reducing Al bond pad deformation and stresses of low- k structures. The variables studied included Al pad properties, capillary geometry, bond pad design (Al pad thickness, Al pad coated with Ni layer), and the effect of ultrasonic bonding power.

Strong Coupling of Epsilon-Near-Zero Phonon Polaritons in Polar Dielectric Heterostructures.

PubMed

Passler, Nikolai Christian; Gubbin, Christopher R; Folland, Thomas Graeme; Razdolski, Ilya; Katzer, D Scott; Storm, David F; Wolf, Martin; De Liberato, Simone; Caldwell, Joshua D; Paarmann, Alexander

2018-06-18

We report the first observation of epsilon-near-zero (ENZ) phonon polaritons in an ultrathin AlN film fully hybridized with surface phonon polaritons (SPhP) supported by the adjacent SiC substrate. Employing a strong coupling model for the analysis of the dispersion and electric field distribution in these hybridized modes, we show that they share the most prominent features of the two precursor modes. The novel ENZ-SPhP coupled polaritons with a highly propagative character and deeply subwavelength light confinement can be utilized as building blocks for future infrared and terahertz nanophotonic integration and communication devices.

A k-Omega Turbulence Model for Quasi-Three-Dimensional Turbomachinery Flows

NASA Technical Reports Server (NTRS)

Chima, Rodrick V.

1995-01-01

A two-equation k-omega turbulence model has been developed and applied to a quasi-three-dimensional viscous analysis code for blade-to-blade flows in turbomachinery. the code includes the effects of rotation, radius change, and variable stream sheet thickness. The flow equations are given and the explicit runge-Kutta solution scheme is described. the k-omega model equations are also given and the upwind implicit approximate-factorization solution scheme is described. Three cases were calculated: transitional flow over a flat plate, a transonic compressor rotor, and transonic turbine vane with heat transfer. Results were compared to theory, experimental data, and to results using the Baldwin-Lomax turbulence model. The two models compared reasonably well with the data and surprisingly well with each other. Although the k-omega model behaves well numerically and simulates effects of transition, freestream turbulence, and wall roughness, it was not decisively better than the Baldwin-Lomax model for the cases considered here.

Turbulence Scales, Rise Times, Caustics, and the Simulation of Sonic Boom Propagation

NASA Technical Reports Server (NTRS)

Pierce, Allan D.

1996-01-01

The general topic of atmospheric turbulence effects on sonic boom propagation is addressed with especial emphasis on taking proper and efficient account of the contributions of the portion oi the turbulence that is associated with extremely high wavenumber components. The recent work reported by Bart Lipkens in his doctoral thesis is reexamined to determine whether the good agreement between his measured rise times with the 1971 theory of the author is fortuitous. It is argued that Lipken's estimate of the distance to the first caustic was a gross overestimate because of the use of a sound speed correlation function shaped like a gaussian curve. In particular, it is argued that the expected distance to the first caustic varies with the kinematic viscosity nu and the energy epsilon dissipated per unit mass per unit time, and the sound speed c as : d(sub first caustic) = nu(exp 7/12) c(exp 2/3)/ epsilon(exp 5/12)(nu x epsilon/c(exp 4))(exp a), where the exponent a is greater than -7/12 and can be argued to be either O or 1/24. In any event, the surprising aspect of the relationship is that it actually goes to zero as the viscosity goes to zero with s held constant. It is argued that the apparent overabundance of caustics can be grossly reduced by a general computational and analytical perspective that partitions the turbulence into two parts, divided by a wavenumber k(sub c). Wavenumbers higher than kc correspond to small-scale turbulence, and the associated turbulence can be taken into account by a renormalization of the ambient sound speed so that the result has a small frequency dependence that results from a spatial averaging over of the smaller-scale turbulent fluctuations. Selection of k(sub c). can be made so large that only a very small number of caustics are encountered if one adopts the premise that the frequency dispersion of pulses is caused by that part of the turbulence spectrum which lies in the inertial range originally predicted by Kolmogoroff. The

Epsilon Aurigae

NASA Astrophysics Data System (ADS)

Turner, Rebecca; Price, A.; Henden, A.

2009-05-01

The IYA 2009 working group on Research Experiences for Students, Teachers, and Citizen-Scientists is planning a multi-year project involving the bright star Eps Aur. The project will go beyond simple observing and also include a major data analysis component. The goal is to introduce the participant to the full scientific process from background research to paper writing for a peer-reviewed journal. It begins with a 10 Star Training Program of several types of binary and transient variable stars that are easy to observe from suburban locations with the naked eye. Participants will be trained both in observing and also in basic data analysis of photometric datasets (light curve and period analysis). Eventually it will lead to a capstone project: monitoring the rare and mysterious 2009-2011 eclipse of Epsilon Aurigae. In the summer of IYA 2009, third-magnitude Eps Aur will experience its next eclipse, which occurs every 27.1 years and lasts 714 days, nearly two years. The star is bright enough to be seen with the naked eye from most urban areas. If fully funded, the project will also involve two public workshops on observing and data analysis in the summers of 2009 and 2010, respectively.

Accumulation of Clostridium perfringens epsilon-toxin in the mouse kidney and its possible biological significance.

PubMed

Tamai, Eiji; Ishida, Tetsuya; Miyata, Shigeru; Matsushita, Osamu; Suda, Hirofumi; Kobayashi, Shoji; Sonobe, Hiroshi; Okabe, Akinobu

2003-09-01

In this paper we show that Clostridium perfringens epsilon-toxin accumulates predominantly in the mouse kidney, where it is distributed mainly in glomeruli, capillaries, and collecting ducts. Although some pycnotic and exfoliated epithelial cells were observed in distal tubuli and collecting ducts, there were no findings indicative of severe renal injury. Bilateral nephrectomy increased the mouse lethality of the toxin, suggesting that the kidney contributes to the host defense against the lethal toxicity of epsilon-toxin.

Epsilon Aurigae's dark side: A thermal phase curve investigation of the near-eclipse phases

NASA Astrophysics Data System (ADS)

Pearson, Richard L.; Stencel, Robert E.; Howell, Steve B.; Hoard, D. W.; Kim, Daryl L.; Russell, Ray W.; Sitko, Michael L.

2017-06-01

The epsilon Aurigae disk-eclipsing binary system moves through a primary eclipse that lasts just over two years and occurs every 27.1-years. It comprises of a warm F0Ia-star (around 7750 K) and an opaque, circumstellar disk hiding an internal B-star (with a temperature greater than 15,000 K). We present new infrared observations from Spitzer's Infrared Array Camera (IRAC, at 3.6 and 4.5 microns) and The Aerospace Corporation’s Broadband Array Spectrograph System (BASS, a 116-element prism system spectrograph spanning 3 - 14 microns) in order to extract the thermal signature of the disk. Previous findings indicate a variable temperature of the disk, depending on its location within the system’s orbit: a 550 +\\- 50 K temperature was identified during eclipse phases, while a 1150 +\\- 50 K temperature was found near secondary—or anti-eclipse—phases by Hoard et al. (2010) and Hoard et al. (2012). We use the latest observations in combination with previously published IRAC and BASS data to compile a more complete thermal phase curve (TPC) of the disk across nearly one-third of the system’s orbit. The TPC indicates heating and cooling effects of the disk, pointing to specific ranges of material properties and disk structure. The observations, process, results, and implications will be presented.

Epsilon-aminocaproic acid therapy in ulcerative colitis

PubMed Central

Salter, R. H.; Read, A. E.

1970-01-01

On the supposition that excessive fibrinolysis at the rectal mucosal level may contribute to the pathogenesis of ulcerative colitis, 11 patients with this condition, in whom rectal bleeding was the predominant feature, were given a course of epsilon-aminocaproic acid therapy. Six patients responded dramatically to this treatment, there was a partial response in two, no effect in two others, and one patient found it necessary to discontinue the treatment after 48 hours because of the severity of side effects. PMID:5311202

Simulation of a 250 kW diesel fuel processor/PEM fuel cell system

NASA Astrophysics Data System (ADS)

Amphlett, J. C.; Mann, R. F.; Peppley, B. A.; Roberge, P. R.; Rodrigues, A.; Salvador, J. P.

Polymer-electrolyte membrane (PEM) fuel cell systems offer a potential power source for utility and mobile applications. Practical fuel cell systems use fuel processors for the production of hydrogen-rich gas. Liquid fuels, such as diesel or other related fuels, are attractive options as feeds to a fuel processor. The generation of hydrogen gas for fuel cells, in most cases, becomes the crucial design issue with respect to weight and volume in these applications. Furthermore, these systems will require a gas clean-up system to insure that the fuel quality meets the demands of the cell anode. The endothermic nature of the reformer will have a significant affect on the overall system efficiency. The gas clean-up system may also significantly effect the overall heat balance. To optimize the performance of this integrated system, therefore, waste heat must be used effectively. Previously, we have concentrated on catalytic methanol-steam reforming. A model of a methanol steam reformer has been previously developed and has been used as the basis for a new, higher temperature model for liquid hydrocarbon fuels. Similarly, our fuel cell evaluation program previously led to the development of a steady-state electrochemical fuel cell model (SSEM). The hydrocarbon fuel processor model and the SSEM have now been incorporated in the development of a process simulation of a 250 kW diesel-fueled reformer/fuel cell system using a process simulator. The performance of this system has been investigated for a variety of operating conditions and a preliminary assessment of thermal integration issues has been carried out. This study demonstrates the application of a process simulation model as a design analysis tool for the development of a 250 kW fuel cell system.

Afterbody External Aerodynamic and Performance Prediction at High Reynolds Numbers

NASA Technical Reports Server (NTRS)

Carlson, John R.

1999-01-01

This CFD experiment concludes that the potential difference between the flow between a flight Reynolds number test and a sub-scale wind tunnel test are substantial for this particular nozzle boattail geometry. The early study was performed using a linear k-epsilon turbulence model. The present study was performed using the Girimaji formulation of a algebraic Reynolds stress turbulent simulation.

Simulation model for electron irradiated IGZO thin film transistors

NASA Astrophysics Data System (ADS)

Dayananda, G. K.; Shantharama Rai, C.; Jayarama, A.; Kim, Hyun Jae

2018-02-01

An efficient drain current simulation model for the electron irradiation effect on the electrical parameters of amorphous In-Ga-Zn-O (IGZO) thin-film transistors is developed. The model is developed based on the specifications such as gate capacitance, channel length, channel width, flat band voltage etc. Electrical parameters of un-irradiated IGZO samples were simulated and compared with the experimental parameters and 1 kGy electron irradiated parameters. The effect of electron irradiation on the IGZO sample was analysed by developing a mathematical model.

Epsilon Metal Waste Form for Immobilization of Noble Metals from Used Nuclear Fuel

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crum, Jarrod V.; Strachan, Denis M.; Rohatgi, Aashish

2013-10-01

Epsilon metal (ε-metal), an alloy of Mo, Pd, Rh, Ru, and Tc, is being developed as a waste form to treat and immobilize the undissolved solids and dissolved noble metals from aqueous reprocessing of commercial used nuclear fuel. Epsilon metal is an attractive waste form for several reasons: increased durability relative to borosilicate glass, it can be fabricated without additives (100% waste loading), and in addition it also benefits borosilicate glass waste loading by eliminating noble metals from the glass and thus the processing problems related there insolubility in glass. This work focused on the processing aspects of the epsilonmore » metal waste form development. Epsilon metal is comprised of refractory metals resulting in high reaction temperatures to form the alloy, expected to be 1500 - 2000°C making it a non-trivial phase to fabricate by traditional methods. Three commercially available advanced technologies were identified: spark-plasma sintering, microwave sintering, and hot isostatic pressing, and investigated as potential methods to fabricate this waste form. Results of these investigations are reported and compared in terms of bulk density, phase assemblage (X-ray diffraction and elemental analysis), and microstructure (scanning electron microscopy).« less

Atomic scale modelling of hexagonal structured metallic fission product alloys

PubMed Central

Middleburgh, S. C.; King, D. M.; Lumpkin, G. R.

2015-01-01

Noble metal particles in the Mo-Pd-Rh-Ru-Tc system have been simulated on the atomic scale using density functional theory techniques for the first time. The composition and behaviour of the epsilon phases are consistent with high-entropy alloys (or multi-principal component alloys)—making the epsilon phase the only hexagonally close packed high-entropy alloy currently described. Configurational entropy effects were considered to predict the stability of the alloys with increasing temperatures. The variation of Mo content was modelled to understand the change in alloy structure and behaviour with fuel burnup (Mo molar content decreases in these alloys as burnup increases). The predicted structures compare extremely well with experimentally ascertained values. Vacancy formation energies and the behaviour of extrinsic defects (including iodine and xenon) in the epsilon phase were also investigated to further understand the impact that the metallic precipitates have on fuel performance. PMID:26064629

Process Modeling and Dynamic Simulation for EAST Helium Refrigerator

NASA Astrophysics Data System (ADS)

Lu, Xiaofei; Fu, Peng; Zhuang, Ming; Qiu, Lilong; Hu, Liangbing

2016-06-01

In this paper, the process modeling and dynamic simulation for the EAST helium refrigerator has been completed. The cryogenic process model is described and the main components are customized in detail. The process model is controlled by the PLC simulator, and the realtime communication between the process model and the controllers is achieved by a customized interface. Validation of the process model has been confirmed based on EAST experimental data during the cool down process of 300-80 K. Simulation results indicate that this process simulator is able to reproduce dynamic behaviors of the EAST helium refrigerator very well for the operation of long pulsed plasma discharge. The cryogenic process simulator based on control architecture is available for operation optimization and control design of EAST cryogenic systems to cope with the long pulsed heat loads in the future. supported by National Natural Science Foundation of China (No. 51306195) and Key Laboratory of Cryogenics, Technical Institute of Physics and Chemistry, CAS (No. CRYO201408)

Cloud radiative effects and changes simulated by the Coupled Model Intercomparison Project Phase 5 models

NASA Astrophysics Data System (ADS)

Shin, Sun-Hee; Kim, Ok-Yeon; Kim, Dongmin; Lee, Myong-In

2017-07-01

Using 32 CMIP5 (Coupled Model Intercomparison Project Phase 5) models, this study examines the veracity in the simulation of cloud amount and their radiative effects (CREs) in the historical run driven by observed external radiative forcing for 1850-2005, and their future changes in the RCP (Representative Concentration Pathway) 4.5 scenario runs for 2006-2100. Validation metrics for the historical run are designed to examine the accuracy in the representation of spatial patterns for climatological mean, and annual and interannual variations of clouds and CREs. The models show large spread in the simulation of cloud amounts, specifically in the low cloud amount. The observed relationship between cloud amount and the controlling large-scale environment are also reproduced diversely by various models. Based on the validation metrics, four models—ACCESS1.0, ACCESS1.3, HadGEM2-CC, and HadGEM2-ES—are selected as best models, and the average of the four models performs more skillfully than the multimodel ensemble average. All models project global-mean SST warming at the increase of the greenhouse gases, but the magnitude varies across the simulations between 1 and 2 K, which is largely attributable to the difference in the change of cloud amount and distribution. The models that simulate more SST warming show a greater increase in the net CRE due to reduced low cloud and increased incoming shortwave radiation, particularly over the regions of marine boundary layer in the subtropics. Selected best-performing models project a significant reduction in global-mean cloud amount of about -0.99% K-1 and net radiative warming of 0.46 W m-2 K-1, suggesting a role of positive feedback to global warming.

Increased mental slowing associated with the APOE epsilon4 allele after trihexyphenidyl oral anticholinergic challenge in healthy elderly.

PubMed

Pomara, Nunzio; Belzer, Ken; Hernando, Raymundo; De La Pena, Corazon; Sidtis, John J

2008-02-01

The objectives of this study were to examine the relationship between APOE epsilon4 and subjective effects of trihexyphenidyl on measures reflecting sedation and confusion and to investigate the relationship between trihexyphenidyl-induced subjective effects and objective memory performance. This study comprised 24 cognitively intact, health elderly adults (12 APOE epsilon4 carriers) at an outpatient geriatric psychiatry research clinic. This was a randomized, double blind, placebo-controlled, three-way, crossover experimental design. All participants received 1.0 mg or 2.0 mg trihexyphenidyl or placebo administered in counterbalanced sequences over a period of three consecutive weeks. Bond and Lader's visual analog scales and alternate versions of the Buschke Selective Reminding Test were administered in a repeated measures design at baseline, 1, 2.5, and 5 hours postdrug administration. A 2.0-mg oral dose of trihexyphenidyl resulted in increased subjective ratings of mental slowness in carriers of the APOE epsilon4 allele only. Drug effects as determined by difference scores between 2.0 mg trihexyphenidyl and placebo on ratings of mental slowness significantly correlated with total and delayed recall on the Buschke Selective Reminding Test in carriers of the APOE epsilon4 allele only. However, no significant effects were found with other visual analog scales reflecting subjective sedation and clear-headedness. The epsilon4 allele in healthy elderly was associated with increased subjective mental slowing after trihexyphenidyl anticholinergic challenge.

An Analysis of the Long-term Photometric Behavior of epsilon Aurigae

NASA Astrophysics Data System (ADS)

Kloppenborg, B. K.; Hopkins, J. L.; Stencel, R. E.

2012-10-01

The lure of a 50% reduction in light has brought a multitude of observers and researchers to epsilon Aur every twenty-seven years, but few have paid attention to the system outside of eclipse. As early as the late 1800s, it was clear that the system undergoes some form of quasi-periodic variation outside of totality, but few considered this effect in their research until the mid-1950s. In this work we focus exclusively on the out-of-eclipse (OOE) variations seen in this system. We have digitized twenty-seven sources of historic photometry from eighty-one different observers. Two of these sources provide twenty-seven years of inter-eclipse UBV photometry which we have analyzed using modern period finding techniques. We have discovered the F-star variations are multi-periodic with at least two periods that evolve in time at DP ≈ -1.5 day/year. These periods are detected when they manifest as near-sinusoidal variations at 3,200-day intervals. We discuss our work in an evolutionary context by comparing the behavior found in epsilon Aur with bona-fide supergiant and post-AGB stars of similar spectral type. Based upon our qualitative comparison, we find the photometric behavior of the F-star in the epsilon Aur system is more indicative of supergiant behavior. Therefore the star is more likely to be a "traditional supergiant" than a post-AGB object. We encourage continued photometric monitoring of this system to test our predictions.

Simulation and analysis of a model dinoflagellate predator-prey system

NASA Astrophysics Data System (ADS)

Mazzoleni, M. J.; Antonelli, T.; Coyne, K. J.; Rossi, L. F.

2015-12-01

This paper analyzes the dynamics of a model dinoflagellate predator-prey system and uses simulations to validate theoretical and experimental studies. A simple model for predator-prey interactions is derived by drawing upon analogies from chemical kinetics. This model is then modified to account for inefficiencies in predation. Simulation results are shown to closely match the model predictions. Additional simulations are then run which are based on experimental observations of predatory dinoflagellate behavior, and this study specifically investigates how the predatory dinoflagellate Karlodinium veneficum uses toxins to immobilize its prey and increase its feeding rate. These simulations account for complex dynamics that were not included in the basic models, and the results from these computational simulations closely match the experimentally observed predatory behavior of K. veneficum and reinforce the notion that predatory dinoflagellates utilize toxins to increase their feeding rate.

Campaign Photometry During The 2010 Eclipse Of Epsilon Aurigae

NASA Astrophysics Data System (ADS)

Hopkins, Jeff; Stencel, R. E.

2011-01-01

Epsilon Aurigae is a long period (27.1 years) eclipsing binary star system with an eclipse that lasts nearly 2 years, but with severe ambiguities about component masses and shape. The current eclipse began on schedule in August of 2009. During the previous, 1982-1984 eclipse, an International Campaign was formed to coordinate a detailed study of the system. While that Campaign was deemed successful, the evolutionary status of the star system remained unclear. Epsilon Aurigae has been observed nearly continuously since the 1982 eclipse. The current Campaign was officially started in 2006. In addition to a Yahoo forum we have a dedicated web site and more than 18 online newsletters reporting photometry, spectroscopy, interferometry and polarimetry data. High quality UBVRIJH band photometric data since before the start of the current eclipse has been submitted. We explore the color differences among the light curves in terms of eclipse phases and archival data. At least one new model of the star system has been proposed since the current Campaign began: a low mass but very high luminosity F star plus a B star surrounded by a debris disk. The current eclipse and in particular the interferometry and spectroscopic data have caused new thoughts on defining eclipsing variable star contact points and phases of an eclipse. Second contact may not be the same point as start of totality and third contact may not be the same point as the start of egress and end of totality. In addition, the much awaited mid-eclipse brightening may or may not have appeared. This paper identifies the current Campaign contributors and the photometric data. This work was supported in part by the bequest of William Herschel Womble in support of astronomy at the University of Denver, by NSF grant 1016678 to the University of Denver.

Epsilon-near-Zero Metamaterial to break the FRET distance barrier

NASA Astrophysics Data System (ADS)

Deshmukh, Rahul; Biehs, Svend-Age; Khwaja, Emaad; Agarwal, Girish; Menon, Vinod

Forster Resonance Energy Transfer (FRET) in a donor acceptor pair is a tool widely used as a spectroscopic ruler in biology and related fields. The high sensitivity to distance change in this technique comes at the expense of limitation on the spatial range (10nm) that can be measured. Here we present an alternate approach where the epsilon-near-zero (EnZ) regime in a metamaterial is used to break the FRET distance limit. We show long range (160nm) energy transfer in a donor acceptor pair across the EnZ metamaterial as proof-of-principle. This scheme can be implemented for any donor acceptor pair by tailoring the metal fill-fraction in the metamaterial design appropriately. The experimental data includes change in donor lifetimes as well as increase in the steady state emission of the acceptor. We also show theoretical simulations which suggest that the EnZ regime is the most effective in mediating such long-range energy transfer as compared to Hyperbolic/Elliptical regimes in metamaterials. NSF DMR 1410249.

Epsilon Aminocaproic Acid Pretreatment Provides Neuroprotection Following Surgically Induced Brain Injury in a Rat Model.

PubMed

Komanapalli, Esther S; Sherchan, Prativa; Rolland, William; Khatibi, Nikan; Martin, Robert D; Applegate, Richard L; Tang, Jiping; Zhang, John H

2016-01-01

Neurosurgical procedures can damage viable brain tissue unintentionally by a wide range of mechanisms. This surgically induced brain injury (SBI) can be a result of direct incision, electrocauterization, or tissue retraction. Plasmin, a serine protease that dissolves fibrin blood clots, has been shown to enhance cerebral edema and hemorrhage accumulation in the brain through disruption of the blood brain barrier. Epsilon aminocaproic acid (EAA), a recognized antifibrinolytic lysine analogue, can reduce the levels of active plasmin and, in doing so, potentially can preserve the neurovascular unit of the brain. We investigated the role of EAA as a pretreatment neuroprotective modality in a SBI rat model, hypothesizing that EAA therapy would protect brain tissue integrity, translating into preserved neurobehavioral function. Male Sprague-Dawley rats were randomly assigned to one of four groups: sham (n = 7), SBI (n = 7), SBI with low-dose EAA, 150 mg/kg (n = 7), and SBI with high-dose EAA, 450 mg/kg (n = 7). SBI was induced by partial right frontal lobe resection through a frontal craniotomy. Postoperative assessment at 24 h included neurobehavioral testing and measurement of brain water content. Results at 24 h showed both low- and high-dose EAA reduced brain water content and improved neurobehavioral function compared with the SBI groups. This suggests that EAA may be a useful pretherapeutic modality for SBI. Further studies are needed to clarify optimal therapeutic dosing and to identify mechanisms of neuroprotection in rat SBI models.

Numerical Simulation of Flow in a Whirling Annular Seal and Comparison with Experiments

NASA Technical Reports Server (NTRS)

Athavale, M. M.; Hendricks, R. C.; Steinetz, B. M.

1995-01-01

The turbulent flow field in a simulated annular seal with a large clearance/radius ratio (0.015) and a whirling rotor was simulated using an advanced 3D CFD code SCISEAL. A circular whirl orbit with synchronous whirl was imposed on the rotor center. The flow field was rendered quasi-steady by making a transformation to a totaling frame. Standard k-epsilon model with wall functions was used to treat the turbulence. Experimentally measured values of flow parameters were used to specify the seal inlet and exit boundary conditions. The computed flow-field in terms of the velocity and pressure is compared with the experimental measurements inside the seal. The agreement between the numerical results and experimental data with correction is fair to good. The capability of current advanced CFD methodology to analyze this complex flow field is demonstrated. The methodology can also be extended to other whirl frequencies. Half- (or sub-) synchronous (fluid film unstable motion) and synchronous (rotor centrifugal force unbalance) whirls are the most unstable whirl modes in turbomachinery seals, and the flow code capability of simulating the flows in steady as well as whirling seals will prove to be extremely useful in the design, analyses, and performance predictions of annular as well as other types of seals.

The NH2-terminal php domain of the alpha subunit of the Escherichia coli replicase binds the epsilon proofreading subunit.

PubMed

Wieczorek, Anna; McHenry, Charles S

2006-05-05

The alpha subunit of the replicase of all bacteria contains a php domain, initially identified by its similarity to histidinol phosphatase but of otherwise unknown function (Aravind, L., and Koonin, E. V. (1998) Nucleic Acids Res. 26, 3746-3752). Deletion of 60 residues from the NH2 terminus of the alpha php domain destroys epsilon binding. The minimal 255-residue php domain, estimated by sequence alignment with homolog YcdX, is insufficient for epsilon binding. However, a 320-residue segment including sequences that immediately precede the polymerase domain binds epsilon with the same affinity as the 1160-residue full-length alpha subunit. A subset of mutations of a conserved acidic residue (Asp43 in Escherichia coli alpha) present in the php domain of all bacterial replicases resulted in defects in epsilon binding. Using sequence alignments, we show that the prototypical gram+ Pol C, which contains the polymerase and proofreading activities within the same polypeptide chain, has an epsilon-like sequence inserted in a surface loop near the center of the homologous YcdX protein. These findings suggest that the php domain serves as a platform to enable coordination of proofreading and polymerase activities during chromosomal replication.

Magnetic field concentration assisted by epsilon-near-zero media

NASA Astrophysics Data System (ADS)

Liberal, Iñigo; Li, Yue; Engheta, Nader

2017-03-01

Strengthening the magnetic response of matter at optical frequencies is of fundamental interest, as it provides additional information in spectroscopy, as well as alternative mechanisms to manipulate light at the nanoscale. Here, we demonstrate theoretically that epsilon-near-zero (ENZ) media can enhance the magnetic field concentration capabilities of dielectric resonators. We demonstrate that the magnetic field enhancement factor is unbounded in theory, and it diverges as the size of the ENZ host increases. In practice, the maximal enhancement factor is limited by dissipation losses in the host, and it is found via numerical simulations that ENZ hosts with moderate losses can enhance the performance of a circular dielectric rod resonator by around one order of magnitude. The physical mechanism behind this process is the strongly inhomogeneous magnetic field distributions induced by ENZ media in neighbouring dielectrics. We show that this is an intrinsic property of ENZ media, and that the occurrence of resonant enhancement is independent of the shape of the host. These results might find applications in spectroscopy, in sensing, in light emission and, in general, in investigating light-matter interactions beyond electric dipole transitions. This article is part of the themed issue 'New horizons for nanophotonics'.

CFD-based Analysis of Non-Premixed Combustion Model in Biomass Grate Furnaces

NASA Astrophysics Data System (ADS)

Hafiz, M.; Nelwan, L. O.; Yulianto, M.

2018-05-01

Biomass grate furnace is widely used as heat source for various uses including grain drying. In this study, a CFD simulation using Fluent 18.0 academic was performed on a biomass ladder grate furnace, which can be used later to improve the design as well as the operation technique of the furnace. A downscaled overfeed type furnace with size of 15 x 30 x 50 cm was built to validate the model. The turbulence model used in this study was k-epsilon while the combustion model of non-premixed combustion was used. The simulation was performed with the biomass feed rate of 4 kg/h and air flow velocity of 7.5 m/s at 3.81 cm inlet diameter. The simulation result at outlet temperature was 673 °C and inside temperature were 775 and 717 °C, while the composition of gases was 0.18 for CO, 0.2 for CO2, 0.001 for CH4, 0.09 for H2O, 0.51 for N2 and 0.029 for other gases. Test results from a biomass ladder grate furnace were used to validate the model and the results are 646 °C for the outlet temperature, 712 and 582 °C for inside temperature. Comparison between simulation and measurement results shows good value with average percentage of deviation 12.12%.

Model of the hydrodynamic loads applied on a rotating halfbridge belonging to a circular settling tank

NASA Astrophysics Data System (ADS)

Dascalescu, A. E.; Lazaroiu, G.; Scupi, A. A.; Oanta, E.

2016-08-01

The rotating half-bridge of a settling tank is employed to sweep the sludge from the wastewater and to vacuum and sent it to the central collector. It has a complex geometry but the main beam may be considered a slender bar loaded by the following category of forces: concentrated forces produced by the weight of the scrapping system of blades, suction pipes, local sludge collecting chamber, plus the sludge in the horizontal sludge transporting pipes; forces produced by the access bridge; buoyant forces produced by the floating barrels according to Archimedes’ principle; distributed forces produced by the weight of the main bridge; hydrodynamic forces. In order to evaluate the hydrodynamic loads we have conceived a numerical model based on the finite volume method, using the ANSYS-Fluent software. To model the flow we used the equations of Reynolds Averaged Navier-Stokes (RANS) for liquids together with Volume of Fluid model (VOF) for multiphase flows. For turbulent model k-epsilon we used the equation for turbulent kinetic energy k and dissipation epsilon. These results will be used to increase the accuracy of the loads’ sub-model in the theoretical models, e. the finite element model and the analytical model.

Engine Icing Modeling and Simulation (Part 2): Performance Simulation of Engine Rollback Phenomena

NASA Technical Reports Server (NTRS)

May, Ryan D.; Guo, Ten-Huei; Veres, Joseph P.; Jorgenson, Philip C. E.

2011-01-01

Ice buildup in the compressor section of a commercial aircraft gas turbine engine can cause a number of engine failures. One of these failure modes is known as engine rollback: an uncommanded decrease in thrust accompanied by a decrease in fan speed and an increase in turbine temperature. This paper describes the development of a model which simulates the system level impact of engine icing using the Commercial Modular Aero-Propulsion System Simulation 40k (C-MAPSS40k). When an ice blockage is added to C-MAPSS40k, the control system responds in a manner similar to that of an actual engine, and, in cases with severe blockage, an engine rollback is observed. Using this capability to simulate engine rollback, a proof-of-concept detection scheme is developed and tested using only typical engine sensors. This paper concludes that the engine control system s limit protection is the proximate cause of iced engine rollback and that the controller can detect the buildup of ice particles in the compressor section. This work serves as a feasibility study for continued research into the detection and mitigation of engine rollback using the propulsion control system.

Qualification of CASMO5 / SIMULATE-3K against the SPERT-III E-core cold start-up experiments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grandi, G.; Moberg, L.

SIMULATE-3K is a three-dimensional kinetic code applicable to LWR Reactivity Initiated Accidents. S3K has been used to calculate several international recognized benchmarks. However, the feedback models in the benchmark exercises are different from the feedback models that SIMULATE-3K uses for LWR reactors. For this reason, it is worth comparing the SIMULATE-3K capabilities for Reactivity Initiated Accidents against kinetic experiments. The Special Power Excursion Reactor Test III was a pressurized-water, nuclear-research facility constructed to analyze the reactor kinetic behavior under initial conditions similar to those of commercial LWRs. The SPERT III E-core resembles a PWR in terms of fuel type, moderator,more » coolant flow rate, and system pressure. The initial test conditions (power, core flow, system pressure, core inlet temperature) are representative of cold start-up, hot start-up, hot standby, and hot full power. The qualification of S3K against the SPERT III E-core measurements is an ongoing work at Studsvik. In this paper, the results for the 30 cold start-up tests are presented. The results show good agreement with the experiments for the reactivity initiated accident main parameters: peak power, energy release and compensated reactivity. Predicted and measured peak powers differ at most by 13%. Measured and predicted reactivity compensations at the time of the peak power differ less than 0.01 $. Predicted and measured energy release differ at most by 13%. All differences are within the experimental uncertainty. (authors)« less

Prediction of Complex Aerodynamic Flows with Explicit Algebraic Stress Models

NASA Technical Reports Server (NTRS)

Abid, Ridha; Morrison, Joseph H.; Gatski, Thomas B.; Speziale, Charles G.

1996-01-01

An explicit algebraic stress equation, developed by Gatski and Speziale, is used in the framework of K-epsilon formulation to predict complex aerodynamic turbulent flows. The nonequilibrium effects are modeled through coefficients that depend nonlinearly on both rotational and irrotational strains. The proposed model was implemented in the ISAAC Navier-Stokes code. Comparisons with the experimental data are presented which clearly demonstrate that explicit algebraic stress models can predict the correct response to nonequilibrium flow.

Preferential emission into epsilon-near-zero metamaterial [Invited

DOE PAGES

Galfsky, Tal; Sun, Zheng; Jacob, Zubin; ...

2015-11-23

We report the use of epsilon near zero (ENZ) metamaterial to control spontaneous emission from Zinc-Oxide (ZnO) excitons. The ENZ material consists of alternating layers of silver and alumina with subwavelength thicknesses, resulting in an effective medium where one of the components of the dielectric constant approach zero between 370nm-440nm wavelength range. Bulk ZnO with photoluminescence maximum in the ENZ regime was deposited via atomic layer deposition to obtain a smooth film with near field coupling to the ENZ metamaterial. Preferential emission from the ZnO layer into the metamaterial with suppression of forward emission by 90% in comparison to ZnOmore » on silicon is observed. We attribute this observation to the presence of dispersionless plasmonic modes in the ENZ regime as shown by the results of theoretical modeling presented here. Integration of ENZ metamaterials with light emitters is an attractive platform for realizing a low threshold subwavelength laser.« less

Anomalous nonlinear absorption in epsilon-near-zero materials: optical limiting and all-optical control.

PubMed

Vincenti, M A; de Ceglia, D; Scalora, Michael

2016-08-01

We investigate nonlinear absorption in films of epsilon-near-zero materials. The combination of large local electric fields at the fundamental frequency and material losses at the harmonic frequencies induce unusual intensity-dependent phenomena. We predict that the second-order nonlinearity of a low-damping, epsilon-near-zero slab produces an optical limiting effect that mimics a two-photon absorption process. Anomalous absorption profiles that depend on low permittivity values at the pump frequency are also predicted for third-order nonlinearities. These findings suggest new opportunities for all-optical light control and novel ways to design reconfigurable and tunable nonlinear devices.

The chromospheres and coronae of five G-K main-sequence stars

NASA Technical Reports Server (NTRS)

Jordan, C.; Ayres, T. R.; Brown, A.; Linsky, J. L.; Simon, T.

1987-01-01

Previous data and high and low dispersion IUE observations of Chi 1 Ori, Alpha Cen A, Xi Boo A, Alpha Cen B, and Epsilon Eri are used to model the atmospheres of these stars from the high chromosphere to the corona. The energy lost by radiation and transferred by thermal conduction is investigated to establish the heating requirements, and results similar to those found for the solar atmosphere are found. The observed emission measurement distribution below 100,000 K can be described by a model in which Alfven wave energy input, observed through nonthermal line broadening, is balanced by radiation losses. Comparison of the coronal, transition region, and chromospheric pressures shows scaling relations which are compatible with previous flux correlations.

Simulations of the Mg II K and Ca II 8542 Lines From an Alfvén Wave-Heated Flare Chromosphere

NASA Technical Reports Server (NTRS)

Kerr, Graham S.; Fletcher, Lyndsay; Russell, Alexander J. B.; Allred, Joel C.

2016-01-01

We use radiation hydrodynamic simulations to examine two models of solar flare chromospheric heating: Alfven wave dissipation and electron beam collisional losses. Both mechanisms are capable of strong chromospheric heating, and we show that the distinctive atmospheric evolution in the mid-to-upper chromosphere results in Mg II k-line emission that should be observably different between wave-heated and beam-heated simulations. We also present Ca II 8542 A profiles that are formed slightly deeper in the chromosphere. The Mg II k-line profiles from our wave-heated simulation are quite different from those from a beam-heated model and are more consistent with Interface Region Imaging Spectrograph observations. The predicted differences between the Ca II 8542 A in the two models are small. We conclude that careful observational and theoretical study of lines formed in the mid-to-upper chromosphere holds genuine promise for distinguishing between competing models for chromospheric heating inflares.

Regulation of K transport in a mathematical model of the cortical collecting tubule.

PubMed

Strieter, J; Weinstein, A M; Giebisch, G; Stephenson, J L

1992-12-01

The effect of luminal flow rate and peritubular pH on Na and K transport is investigated in a mathematical model of the rabbit cortical collecting tubule. The model is used to simulate a 0.4-cm segment of tubule comprised of principal cell, alpha- and beta-intercalated cells, and lateral interspace. Calculations produce luminal profiles of Na, K, Cl, HCO3, and phosphate, as well as of electrical potential and pH. Parameter sets are developed that permit representation of both unstimulated and deoxycorticosterone acetate-stimulated tubules. A series of simulations is performed in which initial luminal flow rate is varied over the range of values between 0.1 and 30 nl/min. A marked flow-dependent enhancement of Na reabsorption and K secretion is seen, especially at lower flows, while Cl and HCO3 transport remain relatively constant. In experimental studies, it has been observed that metabolic alkalosis stimulates and metabolic acidosis inhibits K secretion, while leaving Na transport relatively unaffected [B. A. Stanton and G. Giebisch. Am. J. Physiol. 242 (Renal Fluid Electrolyte Physiol. 11): F544-F551, 1982; K. Tabei, S. Muto, Y. Ando, Y. Sakairi, and Y. Asano. J. Am. Soc. Nephrol. 1: 693, 1990; and K. Tabei, S. Muto, H. Furuya, and Y. Asano. J. Am. Soc. Nephrol. 2: 752, 1991]. Model calculations indicate that, when ion permeabilities are fixed and not dependent on pH, the impact of peritubular HCO3 on K secretion cannot be simulated. When junctional Cl permeability decreases with increasing interspace pH (E. M. Wright and J. M. Diamond. Biochim. Biophys. Acta 163: 57-74, 1968) in the model, there is a marked stimulation of K secretion with alkalosis and inhibition with acidosis. Furthermore, inclusion of a pH-dependent apical Na permeability [L. G. Palmer and G. Frindt. Am. J. Physiol. 253 (Renal Fluid Electrolyte Physiol. 22): F333-F339, 1987] that increases with increasing principal cell pH significantly reduces the change in Na+ reabsorption seen with the p

Three-dimensional kinetic simulations of whistler turbulence in solar wind on parallel supercomputers

NASA Astrophysics Data System (ADS)

Chang, Ouliang

spectral indices from simulated wavevector energy spectra do not match the frequency spectral indices from observations due to the inapplicability of Taylor's hypothesis. In contrast, the direct comparison of simulated frequency energy spectra and solar wind observations shows a closer similarity. Electron density fluctuations power spectra also exhibit a close similarity to solar wind observations and MHD predications, both qualitatively and quantitatively. Linear damping represents an intermediate fraction of the total dissipation of whistler turbulence over a wide range of betae and epsilone. The relative importance of linear damping by comparison to nonlinear dissipation increases with increasing beta e but decreases with increasing epsilone. Correlation coefficient calculations imply that the nonlinear dissipation processes in our simulation are primarily associated with dissipation in regions of intermittent current sheet structures. The simulation results suggest that whistler fluctuations could be the substantial constituent of solar wind turbulence at higher frequencies and short wavelengths, and support the magnetosonic-whistler interpretation of the quasilinear scenario. An even larger scale 3D whistler turbulence simulation exhibits both a forward cascade to shorter wavelengths with wavevectors preferentially k⊥ > k∥, and an inverse cascade to longer wavelengths with wavevectors k ≳ k⊥. The inverse cascade process is primarily driven by the nonlinear wave-wave interaction. It is shown that the energy inverse cascade rate is similar to the energy forward cascade rate at early times although the overall energy in the two cascades is very different. The presence of inverse cascade process does not affect qualitative conclusions established from the whistler turbulence forward cascade simulations.

Piezoelectric ceramics with high dielectric constants for ultrasonic medical transducers.

PubMed

Hosono, Yasuharu; Yamashita, Yohachi

2005-10-01

Complex system ceramics Pb(Sc(1/2)Nb(1/2))O3-Pb(Mg(1/3)Nb(2/3))O3-Pb(Ni(1/2)Nb(1/2))O3-(Pb0.965,Sr0.035) (Zr,Ti)O3 (PSN-PMN-PNN-PSZT abbreviated PSMNZT) have been synthesized by the conventional technique, and dielectric and piezoelectric properties of the ceramics have been investigated for ultrasonic medical transducers. High capacitances of the transducers are desired in order to match the electrical impedance between the transducers and the coaxial cable in array probes. Although piezoelectric ceramics that have high dielectric constants (epsilon33t/epsilon0 > 5000, k'33 < 70%) are produced in many foundries, the dielectric constants are insufficient. However, we have reported that low molecular mass B-site ions in the lead-perovskite structures are important in realizing better dielectric and piezoelectric properties. We focused on the complex system ceramics PSMNZT that consists of light B-site elements. The maximum dielectric constant, epsilon33T/epsilon0 = 7, 200, was confirmed in the ceramics, where k'33 = 69%, d33 = 940 pC/N, and T(c) = 135 degrees C were obtained. Moreover, pulse-echo characteristics were simulated using the Mason model. The PSMNZT ceramic probe showed echo amplitude about 5.5 dB higher than that of the conventional PZT ceramic probe (PZT-5H type). In this paper, the electrical properties of the PSMNZT ceramics and the simulation results for pulse-echo characteristics of the phased-array probes are introduced.

Interaction of Clostridium perfringens epsilon-toxin with biological and model membranes: A putative protein receptor in cells.

PubMed

Manni, Marco M; Sot, Jesús; Goñi, Félix M

2015-03-01

Epsilon-toxin (ETX) is a powerful toxin produced by some strains of Clostridium perfringens (classified as types B and D) that is responsible for enterotoxemia in animals. ETX forms pores through the plasma membrane of eukaryotic cells, consisting of a β-barrel of 14 amphipathic β-strands. ETX shows a high specificity for certain cell lines, of which Madin-Darby canine kidney (MDCK) is the first sensitive cell line identified and the most studied one. The aim of this study was to establish the role of lipids in the toxicity caused by ETX and the correlation of its activity in model and biological membranes. In MDCK cells, using cell counting and confocal microscopy, we have observed that the toxin causes cell death mediated by toxin binding to plasma membrane. Moreover, ETX binds and permeabilizes the membranes of giant plasma membrane vesicles (GPMV). However, little effect is observed on protein-free vesicles. The data suggest the essential role of a protein receptor for the toxin in cell membranes. Copyright © 2014 Elsevier B.V. All rights reserved.

Turbulence modeling of free shear layers for high-performance aircraft

NASA Technical Reports Server (NTRS)

Sondak, Douglas L.

1993-01-01

The High Performance Aircraft (HPA) Grand Challenge of the High Performance Computing and Communications (HPCC) program involves the computation of the flow over a high performance aircraft. A variety of free shear layers, including mixing layers over cavities, impinging jets, blown flaps, and exhaust plumes, may be encountered in such flowfields. Since these free shear layers are usually turbulent, appropriate turbulence models must be utilized in computations in order to accurately simulate these flow features. The HPCC program is relying heavily on parallel computers. A Navier-Stokes solver (POVERFLOW) utilizing the Baldwin-Lomax algebraic turbulence model was developed and tested on a 128-node Intel iPSC/860. Algebraic turbulence models run very fast, and give good results for many flowfields. For complex flowfields such as those mentioned above, however, they are often inadequate. It was therefore deemed that a two-equation turbulence model will be required for the HPA computations. The k-epsilon two-equation turbulence model was implemented on the Intel iPSC/860. Both the Chien low-Reynolds-number model and a generalized wall-function formulation were included.

An enhancer located in a CpG-island 3' to the TCR/CD3-epsilon gene confers T lymphocyte-specificity to its promoter.

PubMed Central

Clevers, H; Lonberg, N; Dunlap, S; Lacy, E; Terhorst, C

1989-01-01

The gene encoding the CD3-epsilon chain of the T cell receptor (TCR/CD3) complex is uniquely transcribed in all T lymphocyte lineage cells. The human CD3-epsilon gene, when introduced into the mouse germ line, was expressed in correct tissue-specific fashion. The gene was then screened for T lymphocyte-specific cis-acting elements in transient chloramphenicol transferase assays. The promoter (-228 to +100) functioned irrespective of cell type. A 1225 bp enhancer with strict T cell-specificity was found in a DNase I hypersensitive site downstream of the last exon, 12 kb from the promoter. This site was present in T cells only. The CD3-epsilon enhancer did not display sequence similarity with the T cell-specific enhancer of CD3-delta, a related gene co-regulated with CD3-epsilon during intrathymic differentiation. The CD3-epsilon enhancer was unusual in that it constituted a CpG island, and was hypomethylated independent of tissue type. Two HTLV I-transformed T cell lines were identified in which the CD3-epsilon gene was not expressed, and in which the enhancer was inactive. Images PMID:2583122

Tsunami simulation using submarine displacement calculated from simulation of ground motion due to seismic source model

NASA Astrophysics Data System (ADS)

Akiyama, S.; Kawaji, K.; Fujihara, S.

2013-12-01

Since fault fracturing due to an earthquake can simultaneously cause ground motion and tsunami, it is appropriate to evaluate the ground motion and the tsunami by single fault model. However, several source models are used independently in the ground motion simulation or the tsunami simulation, because of difficulty in evaluating both phenomena simultaneously. Many source models for the 2011 off the Pacific coast of Tohoku Earthquake are proposed from the inversion analyses of seismic observations or from those of tsunami observations. Most of these models show the similar features, which large amount of slip is located at the shallower part of fault area near the Japan Trench. This indicates that the ground motion and the tsunami can be evaluated by the single source model. Therefore, we examine the possibility of the tsunami prediction, using the fault model estimated from seismic observation records. In this study, we try to carry out the tsunami simulation using the displacement field of oceanic crustal movements, which is calculated from the ground motion simulation of the 2011 off the Pacific coast of Tohoku Earthquake. We use two fault models by Yoshida et al. (2011), which are based on both the teleseismic body wave and on the strong ground motion records. Although there is the common feature in those fault models, the amount of slip near the Japan trench is lager in the fault model from the strong ground motion records than in that from the teleseismic body wave. First, the large-scale ground motion simulations applying those fault models used by the voxel type finite element method are performed for the whole eastern Japan. The synthetic waveforms computed from the simulations are generally consistent with the observation records of K-NET (Kinoshita (1998)) and KiK-net stations (Aoi et al. (2000)), deployed by the National Research Institute for Earth Science and Disaster Prevention (NIED). Next, the tsunami simulations are performed by the finite

Interstitial plasmin activity with epsilon aminocaproic acid: temporal and regional heterogeneity.

PubMed

Reust, Daryl L; Reeves, Scott T; Abernathy, James H; Dixon, Jennifer A; Gaillard, William F; Mukherjee, Rupak; Koval, Christine N; Stroud, Robert E; Spinale, Francis G

2010-05-01

Epsilon aminocaproic acid (EACA) is used in cardiac surgery to modulate plasmin activity (PLact). The present study developed a fluorogenic-microdialysis system to measure in vivo region specific temporal changes in PLact after EACA administration. Pigs (25 to 35 kg) received EACA (75 mg/kg, n = 7) or saline in which microdialysis probes were placed in the liver, myocardium, kidney, and quadricep muscle. The microdialysate contained a plasmin-specific fluorogenic peptide and fluorescence emission, which directly reflected PLact, determined at baseline, 30, 60, 90, and 120 minutes after EACA/vehicle infusion. Epsilon aminocaproic acid caused significant decreases in liver and quadricep PLact at 60, 90, 120 minutes, and at 30, 60, and 120 minutes, respectively (p < 0.05). In contrast, EACA induced significant biphasic changes in heart and kidney PLact profiles with initial increases followed by decreases at 90 and 120 minutes (p < 0.05). The peak EACA interstitial concentrations for all compartments occurred at 30 minutes after infusion, and were fivefold higher in the renal compartment and fourfold higher in the myocardium, when compared with the liver or muscle (p < 0.05). Using a large animal model and in vivo microdialysis measurements of plasmin activity, the unique findings from this study were twofold. First, EACA induced temporally distinct plasmin activity profiles within the plasma and interstitial compartments. Second, EACA caused region-specific changes in plasmin activity profiles. These temporal and regional heterogeneic effects of EACA may have important therapeutic considerations when managing fibrinolysis in the perioperative period. Copyright (c) 2010 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

A multiple-time-scale turbulence model based on variable partitioning of turbulent kinetic energy spectrum

NASA Technical Reports Server (NTRS)

Kim, S.-W.; Chen, C.-P.

1988-01-01

The paper presents a multiple-time-scale turbulence model of a single point closure and a simplified split-spectrum method. Consideration is given to a class of turbulent boundary layer flows and of separated and/or swirling elliptic turbulent flows. For the separated and/or swirling turbulent flows, the present turbulence model yielded significantly improved computational results over those obtained with the standard k-epsilon turbulence model.

PKC Epsilon: A Novel Oncogenic Player in Prostate Cancer

DTIC Science & Technology

2015-11-01

control laboratory diet . Group 2 mice were fed with rofecoxib diet . Protein expression of (A) Akt, phospho-Akt, mTOR, phospho-mTOR, (B) Stat3 and...DISTRIBUTION / AVAILABILITY STATEMENT Approved for Public Release; Distribution Unlimited 13. SUPPLEMENTARY NOTES 14. ABSTRACT Protein kinase C epsilon (PKC...mechanisms orchestrating prostate cancer development and progression. Studies have recognized protein kinase C (PKC) isozymes as eminent players of cancer

Cloning and expression of Clostridium perfringens type D vaccine strain epsilon toxin gene in E. coli as a recombinant vaccine candidate.

PubMed

Aziminia, Parastoo; Pilehchian-Langroudi, Reza; Esmaeilnia, Kasra

2016-08-01

Clostridium perfringens, a Gram-positive obligate anaerobic bacterium, is able to form resistant spores which are widely distributed in the environment. C. perfringens is subdivided into five types A to E based on its four major alpha, beta, epsilon and iota toxins. The aim of the present study was cloning and expression of C. perfringens type D vaccine strain epsilon toxin gene. Genomic DNA was extracted and the epsilon toxin gene was amplified using Pfu DNA polymerase. The PCR product was cloned into pJET1.2/blunt cloning vector. The recombinant vector (pJETε) was sequenced using universal primers. At the next step epsilon toxin gene was subcloned into pET22b(+) expression vector and transformed into E. coli Rosetta (DE3) host strain. The recombinant protein has been expressed in E. coli Rosetta (DE3) cells after subcloning of C. perfringens etx gene (1008 bp) into the expression vector. We concluded that E. coli Rosetta strain was suitable for the expression of recombinant C. perfringens epsilon toxin protein from pET22ε expression vector. This recombinant cell can be used for further research on recombinant vaccine development.

Generalized model for k -core percolation and interdependent networks

NASA Astrophysics Data System (ADS)

Panduranga, Nagendra K.; Gao, Jianxi; Yuan, Xin; Stanley, H. Eugene; Havlin, Shlomo

2017-09-01

Cascading failures in complex systems have been studied extensively using two different models: k -core percolation and interdependent networks. We combine the two models into a general model, solve it analytically, and validate our theoretical results through extensive simulations. We also study the complete phase diagram of the percolation transition as we tune the average local k -core threshold and the coupling between networks. We find that the phase diagram of the combined processes is very rich and includes novel features that do not appear in the models studying each of the processes separately. For example, the phase diagram consists of first- and second-order transition regions separated by two tricritical lines that merge and enclose a two-stage transition region. In the two-stage transition, the size of the giant component undergoes a first-order jump at a certain occupation probability followed by a continuous second-order transition at a lower occupation probability. Furthermore, at certain fixed interdependencies, the percolation transition changes from first-order → second-order → two-stage → first-order as the k -core threshold is increased. The analytic equations describing the phase boundaries of the two-stage transition region are set up, and the critical exponents for each type of transition are derived analytically.

Some practical turbulence modeling options for Reynolds-averaged full Navier-Stokes calculations of three-dimensional flows

NASA Technical Reports Server (NTRS)

Bui, Trong T.

1993-01-01

New turbulence modeling options recently implemented for the 3-D version of Proteus, a Reynolds-averaged compressible Navier-Stokes code, are described. The implemented turbulence models include: the Baldwin-Lomax algebraic model, the Baldwin-Barth one-equation model, the Chien k-epsilon model, and the Launder-Sharma k-epsilon model. Features of this turbulence modeling package include: well documented and easy to use turbulence modeling options, uniform integration of turbulence models from different classes, automatic initialization of turbulence variables for calculations using one- or two-equation turbulence models, multiple solid boundaries treatment, and fully vectorized L-U solver for one- and two-equation models. Validation test cases include the incompressible and compressible flat plate turbulent boundary layers, turbulent developing S-duct flow, and glancing shock wave/turbulent boundary layer interaction. Good agreement is obtained between the computational results and experimental data. Sensitivity of the compressible turbulent solutions with the method of y(sup +) computation, the turbulent length scale correction, and some compressibility corrections are examined in detail. The test cases show that the highly optimized one-and two-equation turbulence models can be used in routine 3-D Navier-Stokes computations with no significant increase in CPU time as compared with the Baldwin-Lomax algebraic model.

Directional and monochromatic thermal emitter from epsilon-near-zero conditions in semiconductor hyperbolic metamaterials

DOE PAGES

Campione, Salvatore; Marquier, Francois; Hugonin, Jean -Paul; ...

2016-10-05

The development of novel thermal sources that control the emission spectrum and the angular emission pattern is of fundamental importance. In this paper, we investigate the thermal emission properties of semiconductor hyperbolic metamaterials (SHMs). Our structure does not require the use of any periodic corrugation to provide monochromatic and directional emission properties. We show that these properties arise because of epsilon-near-zero conditions in SHMs. The thermal emission is dominated by the epsilon-near-zero effect in the doped quantum wells composing the SHM. In conclusion, different properties are observed for s and p polarizations, following the characteristics of the strong anisotropy ofmore » hyperbolic metamaterials.« less

Directional and monochromatic thermal emitter from epsilon-near-zero conditions in semiconductor hyperbolic metamaterials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campione, Salvatore; Marquier, Francois; Hugonin, Jean -Paul

The development of novel thermal sources that control the emission spectrum and the angular emission pattern is of fundamental importance. In this paper, we investigate the thermal emission properties of semiconductor hyperbolic metamaterials (SHMs). Our structure does not require the use of any periodic corrugation to provide monochromatic and directional emission properties. We show that these properties arise because of epsilon-near-zero conditions in SHMs. The thermal emission is dominated by the epsilon-near-zero effect in the doped quantum wells composing the SHM. In conclusion, different properties are observed for s and p polarizations, following the characteristics of the strong anisotropy ofmore » hyperbolic metamaterials.« less

Calculations of turbulent separated flows

NASA Technical Reports Server (NTRS)

Zhu, J.; Shih, T. H.

1993-01-01

A numerical study of incompressible turbulent separated flows is carried out by using two-equation turbulence models of the K-epsilon type. On the basis of realizability analysis, a new formulation of the eddy-viscosity is proposed which ensures the positiveness of turbulent normal stresses - a realizability condition that most existing two-equation turbulence models are unable to satisfy. The present model is applied to calculate two backward-facing step flows. Calculations with the standard K-epsilon model and a recently developed RNG-based K-epsilon model are also made for comparison. The calculations are performed with a finite-volume method. A second-order accurate differencing scheme and sufficiently fine grids are used to ensure the numerical accuracy of solutions. The calculated results are compared with the experimental data for both mean and turbulent quantities. The comparison shows that the present model performs quite well for separated flows.

Improved Parameter-Estimation With MRI-Constrained PET Kinetic Modeling: A Simulation Study

NASA Astrophysics Data System (ADS)

Erlandsson, Kjell; Liljeroth, Maria; Atkinson, David; Arridge, Simon; Ourselin, Sebastien; Hutton, Brian F.

2016-10-01

Kinetic analysis can be applied both to dynamic PET and dynamic contrast enhanced (DCE) MRI data. We have investigated the potential of MRI-constrained PET kinetic modeling using simulated [ 18F]2-FDG data for skeletal muscle. The volume of distribution, Ve, for the extra-vascular extra-cellular space (EES) is the link between the two models: It can be estimated by DCE-MRI, and then used to reduce the number of parameters to estimate in the PET model. We used a 3 tissue-compartment model with 5 rate constants (3TC5k), in order to distinguish between EES and the intra-cellular space (ICS). Time-activity curves were generated by simulation using the 3TC5k model for 3 different Ve values under basal and insulin stimulated conditions. Noise was added and the data were fitted with the 2TC3k model and with the 3TC5k model with and without Ve constraint. One hundred noise-realisations were generated at 4 different noise-levels. The results showed reductions in bias and variance with Ve constraint in the 3TC5k model. We calculated the parameter k3", representing the combined effect of glucose transport across the cellular membrane and phosphorylation, as an extra outcome measure. For k3", the average coefficient of variation was reduced from 52% to 9.7%, while for k3 in the standard 2TC3k model it was 3.4%. The accuracy of the parameters estimated with our new modeling approach depends on the accuracy of the assumed Ve value. In conclusion, we have shown that, by utilising information that could be obtained from DCE-MRI in the kinetic analysis of [ 18F]2-FDG-PET data, it is in principle possible to obtain better parameter estimates with a more complex model, which may provide additional information as compared to the standard model.

A transportable 50 kA dual mode lightning simulator

NASA Technical Reports Server (NTRS)

Salisbury, K.; Lloyd, S.; Chen, Y. G.

1991-01-01

A transportable lightning simulator was designed, built and tested, which is capable of delivering more than 50 kA to an 8 micro-H test object. The simulator was designed to be a versatile device in the lightning laboratory while meeting the requirements of MIL-STD-1757A for component E current waveforms. The system is capable of operating in either a ringing mode with a Q greater than 5 and a nominal frequency of 160 kHz, or a unipolar mode with no hardware configuration changes. The ringing mode is obtained by the LCR series circuit formed by the pulse generator and test object. The unipolar mode is obtained by closing an electrically triggered crowbar switch at peak current. The simulator exceeds the peak current requirement and rate of rise requirements for MIL-STD-1757A in both the ringing and unipolar modes. The pulse half width in the unipolar mode is in excess of 50 microsec and the action is in excess of 10(exp 5) A(exp 2)s. The design, component values, and test results are presented.

[Effect of epsilon-aminocaproic acid, cyclophosphamide and their combination on the growth of autochthonous sarcomas of mice induced by benzo(a)pyrene].

PubMed

Anikin, I V; Tyndyk, M L; Zabezhinskiĭ, M A; Popovich, I G; Anisimov, V N; Pliss, G B

2014-01-01

Antifibrinolytic drug epsilon-aminocaproic acid as a therapeutic form (5% solution in saline) was tested for antitumor activity in the autochthonous subcutaneous tumors of mice, induced by benzo (a) pyrene, in monotherapy mode (instead animals received drinking water) and in combination with cyclophosphamide, which was administered once intraperitoneally in the dose of 200 mg/kg. In the control groups, treated with drinking water and saline solution instead of water, there was no stabilization and reduction in tumor volume, while in the groups receiving epsilon-aminocaproic acid, cyclophosphamide and their combination statistically significantly in comparison with the control groups there was increased the proportion of tumors with not changed or reduced volume; epsilon-aminocaproic acid enhanced the antitumor effect of cyclophosphamide. The data obtained are for further study of the antitumor effect of epsilon-aminocaproic acid.

Numerical Coupling and Simulation of Point-Mass System with the Turbulent Fluid Flow

NASA Astrophysics Data System (ADS)

Gao, Zheng

A computational framework that combines the Eulerian description of the turbulence field with a Lagrangian point-mass ensemble is proposed in this dissertation. Depending on the Reynolds number, the turbulence field is simulated using Direct Numerical Simulation (DNS) or eddy viscosity model. In the meanwhile, the particle system, such as spring-mass system and cloud droplets, are modeled using the ordinary differential system, which is stiff and hence poses a challenge to the stability of the entire system. This computational framework is applied to the numerical study of parachute deceleration and cloud microphysics. These two distinct problems can be uniformly modeled with Partial Differential Equations (PDEs) and Ordinary Differential Equations (ODEs), and numerically solved in the same framework. For the parachute simulation, a novel porosity model is proposed to simulate the porous effects of the parachute canopy. This model is easy to implement with the projection method and is able to reproduce Darcy's law observed in the experiment. Moreover, the impacts of using different versions of k-epsilon turbulence model in the parachute simulation have been investigated and conclude that the standard and Re-Normalisation Group (RNG) model may overestimate the turbulence effects when Reynolds number is small while the Realizable model has a consistent performance with both large and small Reynolds number. For another application, cloud microphysics, the cloud entrainment-mixing problem is studied in the same numerical framework. Three sets of DNS are carried out with both decaying and forced turbulence. The numerical result suggests a new way parameterize the cloud mixing degree using the dynamical measures. The numerical experiments also verify the negative relationship between the droplets number concentration and the vorticity field. The results imply that the gravity has fewer impacts on the forced turbulence than the decaying turbulence. In summary, the

USM3D Unstructured Grid Solutions for CAWAPI at NASA LaRC

NASA Technical Reports Server (NTRS)

Lamar, John E.; Abdol-Hamid, Khaled S.

2007-01-01

In support the Cranked Arrow Wing Aerodynamic Project International (CAWAPI) to improve the Technology Readiness Level of flow solvers by comparing results with measured F-16XL-1 flight data, NASA Langley employed the TetrUSS unstructured grid solver, USM3D, to obtain solutions for all seven flight conditions of interest. A newly available solver version that incorporates a number of turbulence models, including the two-equation linear and non-linear k-epsilon, was used in this study. As a first test, a choice was made to utilize only a single grid resolution with the solver for the simulation of the different flight conditions. Comparisons are presented with three turbulence models in USM3D, flight data for surface pressure, boundary-layer profiles, and skin-friction results, as well as limited predictions from other solvers. A result of these comparisons is that the USM3D solver can be used in an engineering environment to predict flow physics on a complex configuration at flight Reynolds numbers with a two-equation linear k-epsilon turbulence model.

Relationship between the efficacy of rivastigmine and apolipoprotein E (epsilon4) in patients with mild to moderately severe Alzheimer disease.

PubMed

Blesa, Rafael; Aguilar, Miquel; Casanova, Jordi Peña; Boada, Mercé; Martínez, Sergi; Alom, Jordi; de la Hoz, Carlos Hernández; Sancho, Jerónimo; Fernández, Oscar; Gil-Neciga, Eulogio; Massó, Jose Félix Martí

2006-01-01

Alzheimer disease is the most common form of dementia in Western countries and the leading cause of disability in the over-65 population. Apolipoprotein E (APOE) is a multifunctional protein implied in lipid metabolism and neurobiology. Polymorphisms of the APOE gene have been associated with a variety of medical disorders, from arteriosclerosis to AD. A high frequency of the APOE epsilon4 allele has been found in patients with AD and they seem to have a higher risk of developing the disease. Various authors have suggested a possible relationship between the efficacy of cholinesterase inhibitors and the presence of the APOE epsilon4 allele. The purpose of the present study was to compare prospectively the efficacy of rivastigmine in patients with mild to moderately severe AD presenting different polymorphisms of the APOE gene on chromosome 19 and to determine if there was a difference in the response to rivastigmine treatment in AD patients with the APOE epsilon4 allele (heterozygous or homozygous) versus patients who had other forms of APOE, such as epsilon2 and epsilon3. This was an open-label, nonrandomized, multicenter study in patients over 50 years of age diagnosed with mild to moderately severe AD. The results of the analysis of this study indicate that the presence of at least one APOE epsilon4 allele does not determine a difference in the response to treatment with rivastigmine. The data indicate that knowledge of the patient's genotype is not necessary for treatment with rivastigmine. It would be interesting in the future to analyze the interaction between these 2 factors using other available anticholinesterase drugs.

Extending the modeling of the anisotropic galaxy power spectrum to k = 0.4 hMpc-1

NASA Astrophysics Data System (ADS)

Hand, Nick; Seljak, Uroš; Beutler, Florian; Vlah, Zvonimir

2017-10-01

We present a model for the redshift-space power spectrum of galaxies and demonstrate its accuracy in describing the monopole, quadrupole, and hexadecapole of the galaxy density field down to scales of k = 0.4 hMpc-1. The model describes the clustering of galaxies in the context of a halo model and the clustering of the underlying halos in redshift space using a combination of Eulerian perturbation theory and N-body simulations. The modeling of redshift-space distortions is done using the so-called distribution function approach. The final model has 13 free parameters, and each parameter is physically motivated rather than a nuisance parameter, which allows the use of well-motivated priors. We account for the Finger-of-God effect from centrals and both isolated and non-isolated satellites rather than using a single velocity dispersion to describe the combined effect. We test and validate the accuracy of the model on several sets of high-fidelity N-body simulations, as well as realistic mock catalogs designed to simulate the BOSS DR12 CMASS data set. The suite of simulations covers a range of cosmologies and galaxy bias models, providing a rigorous test of the level of theoretical systematics present in the model. The level of bias in the recovered values of f σ8 is found to be small. When including scales to k = 0.4 hMpc-1, we find 15-30% gains in the statistical precision of f σ8 relative to k = 0.2 hMpc-1 and a roughly 10-15% improvement for the perpendicular Alcock-Paczynski parameter α⊥. Using the BOSS DR12 CMASS mocks as a benchmark for comparison, we estimate an uncertainty on f σ8 that is ~10-20% larger than other similar Fourier-space RSD models in the literature that use k <= 0.2 hMpc-1, suggesting that these models likely have a too-limited parametrization.

Occultation studies of planets and satellites: The occultation of epsilon Geminorum by Mars

NASA Technical Reports Server (NTRS)

Elliot, J. L.; Veverka, J.; Sagan, C.

1977-01-01

The occultation of epsilon Geminorum by Mars on 1976 April 8 was observed at three wavelengths and 4 ms time resolution with the 91 cm telescope. Temperature, pressure, and number density profiles of the Martian atmosphere were obtained for both the immersion and emersion events. Within the altitude range of 50 to 80 km above the mean surface, the mean temperature is 145 K, and the profiles exhibit wavelike structures with a peak to peak amplitude of 35 K and a vertical scale of about 20 km. The ratio of the refractivity of the atmosphere at 4500 A and 7500 A, determined from the time shift of the light curves for these wavelengths, is consistent with the atmospheric composition measured by Viking 1, 15 weeks later. From the central flash - a bright feature in the light curve midway between immersion and emersion - an optical depth is found at 4500 A of 3.3 plus or minus 1.7 per km atm (about 0.23 per equivalent Martian air mass) for the atmosphere about 25 km above the mean surface, near the south polar region. This large value and its weak wavelength dependence rule out Rayleigh scattering as the principal cause of the observed extinction.

Benchmarking Model Variants in Development of a Hardware-in-the-Loop Simulation System

NASA Technical Reports Server (NTRS)

Aretskin-Hariton, Eliot D.; Zinnecker, Alicia M.; Kratz, Jonathan L.; Culley, Dennis E.; Thomas, George L.

2016-01-01

Distributed engine control architecture presents a significant increase in complexity over traditional implementations when viewed from the perspective of system simulation and hardware design and test. Even if the overall function of the control scheme remains the same, the hardware implementation can have a significant effect on the overall system performance due to differences in the creation and flow of data between control elements. A Hardware-in-the-Loop (HIL) simulation system is under development at NASA Glenn Research Center that enables the exploration of these hardware dependent issues. The system is based on, but not limited to, the Commercial Modular Aero-Propulsion System Simulation 40k (C-MAPSS40k). This paper describes the step-by-step conversion from the self-contained baseline model to the hardware in the loop model, and the validation of each step. As the control model hardware fidelity was improved during HIL system development, benchmarking simulations were performed to verify that engine system performance characteristics remained the same. The results demonstrate the goal of the effort; the new HIL configurations have similar functionality and performance compared to the baseline C-MAPSS40k system.

Acute hyperkalemia as a complication of intravenous therapy with epsilon-aminocaproic acid.

PubMed

Banerjee, Arna; Stoica, Cristina; Walia, Ann

2011-11-01

Epsilon-aminocaproic acid (EACA) is used frequently during surgery as prophylaxis to decrease blood loss and transfusion requirements. A rare complication of EACA induced acute hyperkalemia in a patient undergoing total hip replacement is presented. Published by Elsevier Inc.

A Finite Element Model of the THOR-K Dummy for Aerospace and Aircraft Impact Simulations

NASA Technical Reports Server (NTRS)

Putnam, Jacob; Untaroiu, Costin D.; Somers, Jeffrey T.; Pellettiere, Joseph

2013-01-01

1) Update and Improve the THOR Finite Element (FE) model to specifications of the latest mod kit (THOR-K). 2) Evaluate the kinematic and kinetic response of the FE model in frontal, spinal, and lateral impact loading conditions.

Use of the VIP-Man model to calculate energy imparted and effective dose for x-ray examinations.

PubMed

Winslow, Mark; Huda, Walter; Xu, X George; Chao, T C; Shi, C Y; Ogden, Kent M; Scalzetti, Ernest M

2004-02-01

A male human tomographic model was used to calculate values of energy imparted (epsilon) and effective dose (E) for monoenergetic photons (30-150 keV) in radiographic examinations. Energy deposition in the organs and tissues of the human phantom were obtained using Monte Carlo simulations. Values of E/epsilon were obtained for three common projections [anterior-posterior (AP), posterior-anterior (PA), and lateral (LAT)] of the head, cervical spine, chest, and abdomen, respectively. For head radiographs, all three projections yielded similar E/epsilon values. At 30 keV, the value of E/epsilon was approximately 1.6 mSv J(-1), which is increased to approximately 7 mSv J(-1) for 150 keV photons. The AP cervical spine was the only projection investigated where the value of E/epsilon decreased with increasing photon energy. Above 70 keV, cervical spine E/epsilon values showed little energy dependence and ranged between approximately 8.5 mSv J(-1) for PA projections and approximately 17 mSv J(-1) for AP projections. The values of E/epsilon for AP chest examinations showed very little variation with photon energy, and had values of approximately 23 mSv J(-1). Values of E/epsilon for PA and LAT chest projections were substantially lower than the AP projections and increased with increasing photon energy. For abdominal radiographs, differences between the PA and LAT projections were very small. All abdomen projections showed an increase in the E/epsilon ratio with increasing photon energy, and reached a maximum value of approximately 13.5 mSv J(-1) for AP projections, and approximately 9.5 mSv J(-1) for PA/lateral projections. These monoenergetic E/epsilon values can generate values of E/epsilon for any x-ray spectrum, and can be used to convert values of energy imparted into effective dose for patients undergoing common head and body radiological examinations.

Evidence for apolipoprotein E {epsilon}4 association in early-onset Alzheimer`s patients with late-onset relatives

DOE Office of Scientific and Technical Information (OSTI.GOV)

Perez-Tur, J.; Delacourte, A.; Chartier-Harlin, M.C.

1995-12-18

Recently several reports have extended the apolipoprotein E (APOE) {epsilon}4 association found in late-onset Alzheimer`s disease (LOAD) patients to early-onset (EO) AD patients. We have studied this question in a large population of 119 EOAD patients (onset {<=}60 years) in which family history was carefully assessed and in 109 controls. We show that the APOE {epsilon}A allele frequency is increased only in the subset of patients who belong to families where LOAD secondary cases are present. Our sampling scheme permits us to demonstrate that, for an individual, bearing at least one {epsilon}4 allele increases both the risk of AD beforemore » age 60 and the probability of belonging to a family with late-onset affected subjects. Our results suggest that a subset of EOAD cases shares a common determinism with LOAD cases. 19 refs., 3 tabs.« less

ApoE -491A/T promoter polymorphism is not an independent risk factor, but associated with the epsilon4 allele in Hungarian Alzheimer's dementia population.

PubMed

Juhász, Anna; Palotás, András; Janka, Zoltán; Rimanóczy, Agnes; Palotás, Miklós; Bódi, Nikoletta; Boda, Krisztina; Zana, Marianna; Vincze, Gábor; Kálmán, János

2005-05-01

Apolipoprotein E gene (Apo(epsilon)) has three common alleles (epsilon2, epsilon3, and epsilon4), of which epsilon4 has been shown to be associated with an increased risk for Alzheimer's disease (AD). Possible additional genetic factors, like the -491A variant of ApoE promoter may modify the development of AD, independently of the ApoE allele status. The objective of this study was to investigate whether A/T allelic polymorphism at site-491 of the ApoE promoter is associated with AD in a Hungarian population. The genomic DNA isolated from peripheral blood lymphocytes of 52 late-onset AD and 53 control individuals was used as a template for the two examined polymorphisms and PCR assay was applied. The epsilon4 allele was significantly over-represented in the AD group (28%) as compared with the control population (7%). No significant differences have been found between the control and the AD populations regarding the occurrence of the promoter A allele frequencies (control: 77%, AD: 70%). However, the AA genotype was more frequent in the AD group (48%) than in the control (10%) when the presence of epsilon4 allele was also considered. It is unlikely therefore that the -491A variant of the ApoE promoter gene is an independent risk factor in the Hungarian AD population, but a linkage disequilibrium exists between the two examined mutations.

User's guide for a general purpose dam-break flood simulation model (K-634)

USGS Publications Warehouse

Land, Larry F.

1981-01-01

An existing computer program for simulating dam-break floods for forecast purposes has been modified with an emphasis on general purpose applications. The original model was formulated, developed and documented by the National Weather Service. This model is based on the complete flow equations and uses a nonlinear implicit finite-difference numerical method. The first phase of the simulation routes a flood wave through the reservoir and computes an outflow hydrograph which is the sum of the flow through the dam 's structures and the gradually developing breach. The second phase routes this outflow hydrograph through the stream which may be nonprismatic and have segments with subcritical or supercritical flow. The results are discharge and stage hydrographs at the dam as well as all of the computational nodes in the channel. From these hydrographs, peak discharge and stage profiles are tabulated. (USGS)

Recombinant expression of in silico identified Bcell epitope of epsilon toxin of Clostridium perfringens in translational fusion with a carrier protein.

PubMed

Kaushik, Himani; Deshmukh, Sachin; Mathur, Deepika Dayal; Tiwari, Archana; Garg, Lalit C

2013-01-01

Epsilon toxin secreted by Clostridium perfringens types B and D has been directly implicated as the causative agent of fatal enterotoxemia in domestic animals. The aim of the present study is to use in silico approach for identification of B-cell epitope(s) of epsilon toxin, and its expression in fusion with a carrier protein to analyze its potential as vaccine candidate(s). Using different computational analyses and bioinformatics tools, a number of antigenic determinant regions of epsilon toxin were identified. One of the B cell epitopes of epsilon toxin comprising the region (amino acids 40-62) was identified as a promising antigenic determinant. This Etx epitope (Etx40-62) was cloned and expressed as a translational fusion with B-subunit of heat labile enterotoxin (LTB) of E. coli in a secretory expression system. Similar to the native LTB, the recombinant fusion protein retained the ability to pentamerize and bind to GM1 ganglioside receptor of LTB. The rLTB.Etx40-62 could be detected both with anti-Etx and anti-LTB antisera. The rLTB.Etx40-62 fusion protein thus can be evaluated as a potential vaccine candidate against C. perfringens. aa - amino acid(s), Etx - epsilon toxin of Clostridium perfringens, LTB - B-subunit of heat labile enterotoxin of E. coli.

Loss of endothelial barrier antigen immunoreactivity as a marker of Clostridium perfringens type D epsilon toxin-induced microvascular damage in rat brain.

PubMed

Finnie, J W; Manavis, J; Chidlow, G

2014-01-01

The epsilon toxin elaborated by Clostridium perfringens type D in the intestine of domestic livestock is principally responsible for the neurological disease produced after its absorption in excessive quantities into the systemic circulation. The fundamental basis of the cerebral damage induced by epsilon toxin appears to be microvascular injury with ensuing severe, diffuse vasogenic oedema. Endothelial barrier antigen (EBA), which is normally expressed by virtually all capillaries and venules in the rat brain, was used in this study as a marker of blood-brain barrier (BBB) integrity. After exposure to high levels of circulating epsilon toxin, there was substantial loss of EBA in many brain microvessels, attended by widespread plasma albumin extravasation. These results support microvascular injury and subsequent BBB breakdown as a key factor in the pathogenesis of epsilon toxin-induced neurological disease. Copyright © 2014 Elsevier Ltd. All rights reserved.

Performance of Reynolds Averaged Navier-Stokes Models in Predicting Separated Flows: Study of the Hump Flow Model Problem

NASA Technical Reports Server (NTRS)

Cappelli, Daniele; Mansour, Nagi N.

2012-01-01

Separation can be seen in most aerodynamic flows, but accurate prediction of separated flows is still a challenging problem for computational fluid dynamics (CFD) tools. The behavior of several Reynolds Averaged Navier-Stokes (RANS) models in predicting the separated ow over a wall-mounted hump is studied. The strengths and weaknesses of the most popular RANS models (Spalart-Allmaras, k-epsilon, k-omega, k-omega-SST) are evaluated using the open source software OpenFOAM. The hump ow modeled in this work has been documented in the 2004 CFD Validation Workshop on Synthetic Jets and Turbulent Separation Control. Only the baseline case is treated; the slot flow control cases are not considered in this paper. Particular attention is given to predicting the size of the recirculation bubble, the position of the reattachment point, and the velocity profiles downstream of the hump.

Peculiar activity of the September epsilon-Perseids on 2013 September 9

NASA Astrophysics Data System (ADS)

Rendtel, Jürgen; Lyytinen, Esko; Molau, Sirko; Barentsen, Geert

2014-04-01

The September epsilon-Perseids (224 SPE) showed increased activity on 2013 September 9. The outburst was not completely unexpected but was not announced earlier. At the peak position we find a peculiar low population index from video data (r=1.45±0.15), applying a new technique. For calibration we used magnitude data of the shower off the peak (r=2.15±0.25) and of sporadic meteors observed during the same period (r=2.95±0.20). This is significantly lower than the long term average for the September epsilon-Perseids (r=2.50±0.25) and indicates that the meteoroids causing the 2013 outburst deviate from the average particle size distribution of the stream. Due to the very low value of r, the ZHR and meteoroid flux F reached rather moderate values: ZHR=32±8, flux F=2.3±0.6×10^{-3} km^{-2} h^{-1}. The centre of the outburst (fit of the peak profile) was found at sol=167.200° ± 0.005° corresponding to 2013 September 9, 2218 UT with a steeper ascending branch and possible sub-peaks. The duration (FWHM) was 0.034°, i.e. 50 minutes. Model calculations explain the 2013 outburst of the SPE based on the date and radiant of the 2008 outburst. The large number of minor to medium activity showers in September-October are interpreted as a group of meteoroid streams or trails which cause recognizeable rates only on a few occasions and remain below a detection limit over most of the time.

Modeling slug tests in unconfined aquifers with both oscillatory and overdamped responses, and with low-K and high-K skin effects

NASA Astrophysics Data System (ADS)

Thoma, M. J.; Malama, B.; Barrash, W.; Bohling, G.; Butler, J. J.

2009-12-01

We extend the models for slug tests developed by Hyder et al. (1994) and Butler and Zhan (2004) to obtain a single general model for slug tests in unconfined aquifers in partially penetrating wells with a near-well disturbed zone (skin). The full range of responses, oscillatory to overdamped, is considered since both types of responses are common in wells in unconsolidated coarse fluvial aquifers, and others. The general semi-analytical solution allows for skin and formation storage as well as anisotropy in skin and formation hydraulic conductivity (K). The water table is treated as a fixed head boundary so the solution is applicable for wells screened below the water table. The model is validated by comparison with other models and by matching field data from unconfined fluvial aquifers at sites in Nebraska (MSEA) and Idaho (BHRS). We examine the effects of varying skin K and skin thickness to simulate the impact of a near-well disturbed zone that is lower (damage) or higher (filter pack) K than the formation. Results indicate that, for a given set of measured behavior at an example test zone, minor progressive decreases in estimated formation K occur with increases in assumed skin K, and moderate increases in estimated formation K occur with decreases in assumed skin K. Major increases (orders of magnitude) in estimated formation K occur with increased thickness of low-K skin. The importance of incorporating a finite-thickness representation of the skin, rather than the conventional infinitely thin representation, is also addressed.

Time domain simulation of harmonic ultrasound images and beam patterns in 3D using the k-space pseudospectral method.

PubMed

Treeby, Bradley E; Tumen, Mustafa; Cox, B T

2011-01-01

A k-space pseudospectral model is developed for the fast full-wave simulation of nonlinear ultrasound propagation through heterogeneous media. The model uses a novel equation of state to account for nonlinearity in addition to power law absorption. The spectral calculation of the spatial gradients enables a significant reduction in the number of required grid nodes compared to finite difference methods. The model is parallelized using a graphical processing unit (GPU) which allows the simulation of individual ultrasound scan lines using a 256 x 256 x 128 voxel grid in less than five minutes. Several numerical examples are given, including the simulation of harmonic ultrasound images and beam patterns using a linear phased array transducer.

Molecular investigation on the interaction of spermine with proteinase K by multispectroscopic techniques and molecular simulation studies.

PubMed

Hosseini-Koupaei, Mansoore; Shareghi, Behzad; Saboury, Ali Akbar; Davar, Fateme

2017-01-01

The alteration in structure, function and stability of proteinase K in the presence of spermine was investigated using spectroscopic methods and simulation techniques. The stability and enzyme activity of proteinase K-spermine complex were significantly enhanced as compared to that of the pure enzyme. The increase in the value of V max and the catalytic efficiency of Proteinase K in presence of spermine confirmed that the polyamine could bring the enzyme hyperactivation. UV-vis spectroscopy, intrinsic fluorescence and circular dichroism methods demonstrated that the binding of spermine changed the microenvironment and structure of proteinase K. The fluorescence studies, showing that spermine quenched the intensity of proteinase K with static mechanism. Thermodynamic parameters analysis suggested that hydrogen bond and van der Waals forces play a key role in complex stability which is in agreement with modeling studies. The CD spectra represented the secondary structure alteration of proteinase K with an increase in α-helicity and a decrease in β-sheet of proteinase K upon spermine conjugation. The molecular simulation results proposed that spermine could interact with proteinase K spontaneously at single binding site, which is in agreement with spectroscopic results. This agreement between experimental and theoretical results may be a worth method for protein-ligand complex studies. Copyright © 2016 Elsevier B.V. All rights reserved.

Comparison of transport properties models for numerical simulations of Mars entry vehicles

NASA Astrophysics Data System (ADS)

Hao, Jiaao; Wang, Jingying; Gao, Zhenxun; Jiang, Chongwen; Lee, Chunhian

2017-01-01

Effects of two different models for transport properties, including the approximate model and the collision integral model, on hypersonic flow simulations of Mars entry vehicles are numerically investigated. A least square fitting is firstly performed using the best-available data of collision integrals for Martian atmosphere species within the temperature range of 300-20,000 K. Then, the performance of these two transport properties models are compared for an equilibrium Martian atmosphere gas mixture at 10 kPa and temperatures ranging from 1000 to 10,000 K. Finally, four flight conditions chosen from the trajectory of the Mars Pathfinder entry vehicle are numerically simulated. It is indicated that the approximate model is capable of accurately providing the distributions of species mass fractions and temperatures in the flowfield. Both models give similar translational-rotational and vibrational heat fluxes. However, the chemical diffusion heat fluxes predicted by the approximate model are significantly larger than the results computed by the collision integral model, particularly in the vicinity of the forebody stagnation point, whose maximum relative error of 15% for the super-catalytic case. The diffusion model employed in the approximate model is responsible to the discrepancy. In addition, the wake structure is largely unaffected by the transport properties models.

D'une ouverture de la voyelle /epsilon/ en finale absolue en francais quebecois : analyse acoustique et perceptive

NASA Astrophysics Data System (ADS)

Riverin-Coutlee, Josiane

Cette contribution est consacree a l'ouverture du /epsilon/ en finale absolue, un phenomene phonetique repute etre en declin en francais quebecois et caracteristique de locuteurs âges, peu scolarises, issus de milieux populaires et s'exprimant en situation de communication informelle. Une analyse acoustique de 480 voyelles /epsilon/ issues de la parole formelle de 40 jeunes etudiants universitaires originaires des centres urbains de Saguenay et de Quebec revele toutefois que le phenomene est encore bien vivant en francais quebecois et qu'il est plus frequent chez les locuteurs de Saguenay, une tendance validee auditivement par accord inter-juges. Les resultats d'un test de discrimination et d'identification mene aupres de 26 etudiants universitaires originaires de ces deux memes villes indiquent que les auditeurs naifs de Saguenay semblent moins sensibles a la variation et moins enclins a juger de l'origine geographique d'un locuteur a partir de sa prononciation de la voyelle /epsilon/ en fin de mot.

A k-space method for large-scale models of wave propagation in tissue.

PubMed

Mast, T D; Souriau, L P; Liu, D L; Tabei, M; Nachman, A I; Waag, R C

2001-03-01

Large-scale simulation of ultrasonic pulse propagation in inhomogeneous tissue is important for the study of ultrasound-tissue interaction as well as for development of new imaging methods. Typical scales of interest span hundreds of wavelengths; most current two-dimensional methods, such as finite-difference and finite-element methods, are unable to compute propagation on this scale with the efficiency needed for imaging studies. Furthermore, for most available methods of simulating ultrasonic propagation, large-scale, three-dimensional computations of ultrasonic scattering are infeasible. Some of these difficulties have been overcome by previous pseudospectral and k-space methods, which allow substantial portions of the necessary computations to be executed using fast Fourier transforms. This paper presents a simplified derivation of the k-space method for a medium of variable sound speed and density; the derivation clearly shows the relationship of this k-space method to both past k-space methods and pseudospectral methods. In the present method, the spatial differential equations are solved by a simple Fourier transform method, and temporal iteration is performed using a k-t space propagator. The temporal iteration procedure is shown to be exact for homogeneous media, unconditionally stable for "slow" (c(x) < or = c0) media, and highly accurate for general weakly scattering media. The applicability of the k-space method to large-scale soft tissue modeling is shown by simulating two-dimensional propagation of an incident plane wave through several tissue-mimicking cylinders as well as a model chest wall cross section. A three-dimensional implementation of the k-space method is also employed for the example problem of propagation through a tissue-mimicking sphere. Numerical results indicate that the k-space method is accurate for large-scale soft tissue computations with much greater efficiency than that of an analogous leapfrog pseudospectral method or a 2

Variation in the expression of macrophage Fc epsilon receptors in relation to experimental rat schistosome infection.

PubMed

Pestel, J; Joseph, M; Dessaint, J P; Capron, A

1988-01-01

The relationship between IgE and rat peritoneal macrophages during the course of Schistosoma mansoni infection was examined. Immune macrophages exhibited an IgE-dependent schistosomulicidal activity mainly between the 5th and the 7th weeks. At this period the percentages of anti-IgE rosettes whose variations appeared consecutive to the variations in the serum IgE level were higher. Following incubation in a serum-free medium immune macrophages could release membrane-associated IgE, to a certain extent, and consequently formed rosettes with IgE-coated erythrocytes, indicating the existence of Fc epsilon receptors. Thus, in terms of rosettes, their number varied in the course of the disease. In fact IgE-rich serum (i.e. at day 42) as IgE molecules could induce this macrophage Fc epsilon receptor. Moreover when transferred to syngeneic rats in association with parasite-specific IgE Fc epsilon R2+ macrophages led to some protection against challenge infection. All the data reported here emphasize the determining role of macrophages and IgE in immunity to schistosomiasis.

Recombinant Alpha, Beta, and Epsilon Toxins of Clostridium perfringens: Production Strategies and Applications as Veterinary Vaccines

PubMed Central

Ferreira, Marcos Roberto A.; Moreira, Gustavo Marçal S. G.; da Cunha, Carlos Eduardo P.; Mendonça, Marcelo; Salvarani, Felipe M.; Moreira, Ângela N.; Conceição, Fabricio R.

2016-01-01

Clostridium perfringens is a spore-forming, commensal, ubiquitous bacterium that is present in the gastrointestinal tract of healthy humans and animals. This bacterium produces up to 18 toxins. The species is classified into five toxinotypes (A–E) according to the toxins that the bacterium produces: alpha, beta, epsilon, or iota. Each of these toxinotypes is associated with myriad different, frequently fatal, illnesses that affect a range of farm animals and humans. Alpha, beta, and epsilon toxins are the main causes of disease. Vaccinations that generate neutralizing antibodies are the most common prophylactic measures that are currently in use. These vaccines consist of toxoids that are obtained from C. perfringens cultures. Recombinant vaccines offer several advantages over conventional toxoids, especially in terms of the production process. As such, they are steadily gaining ground as a promising vaccination solution. This review discusses the main strategies that are currently used to produce recombinant vaccines containing alpha, beta, and epsilon toxins of C. perfringens, as well as the potential application of these molecules as vaccines for mammalian livestock animals. PMID:27879630

An Empirical Study of Students' Understanding of a Logical Structure in the Definition of Limit via the epsilon-Strip Activity

ERIC Educational Resources Information Center

Roh, Kyeong Hah

2010-01-01

This study explored students' understanding of a logical structure in defining the limit of a sequence, focusing on the relationship between epsilon and N. The subjects of this study were college students who had already encountered the concept of limit but did not have any experience with rigorous proofs using the epsilon-N definition. This study…

RANS Simulation (Actuator Disk Model[ADM]) of the NREL Phase VI wind turbine modeled as MHK Turbine

DOE Data Explorer

Javaherchi, Teymour

2016-06-08

Attached are the .cas and .dat files for the Reynolds Averaged Navier-Stokes (RANS) simulation of a single lab-scaled DOE RM1 turbine implemented in ANSYS FLUENT CFD-package. In this case study the flow field around and in the wake of the NREL Phase VI wind turbine, modeled is MHK turbine, is simulated using Actuator Disk Model (a.k.a Porous Media) by solving RANS equations coupled with a turbulence closure model. It should be highlighted that in this simulation the actual geometry of the rotor blade is not modeled. The effect of turbine rotating blades are modeled using the Actuator Disk Theory (see the stated section of attached M.Sc. thesis for more details).

Interleukin-1 beta induced synthesis of protein kinase C-delta and protein kinase C-epsilon in EL4 thymoma cells: possible involvement of phosphatidylinositol 3-kinase.

PubMed

Varley, C L; Royds, J A; Brown, B L; Dobson, P R

2001-01-01

We present evidence here that the proinflammatory cytokine, interleukin-1 beta (IL-1 beta) stimulates a significant increase in protein kinase C (PKC)-epsilon and PKC-delta protein levels and increases PKC-epsilon, but not PKC-delta, transcripts in EL4 thymoma cells. Incubation of EL4 cells with IL-1 beta induced protein synthesis of PKC-epsilon (6-fold increase) by 7 h and had a biphasic effect on PKC-delta levels with peaks at 4 h (2-fold increase) and 24 h (4-fold increase). At the level of mRNA, PKC-epsilon, but not PKC-delta levels, were induced after incubation of EL4 cells with IL-1 beta. The signalling mechanisms utilized by IL-1 beta to induce the synthesis of these PKC isoforms were investigated. Two phosphatidylinositol (PI) 3-kinase-specific inhibitors, wortmannin and LY294002, inhibited IL-1 beta-induced synthesis of PKC-epsilon. However, the PI 3-kinase inhibitors had little effect on the IL-1 beta-induced synthesis of PKC-delta in these cells. Our results indicate that IL-1 beta induced both PKC-delta and PKC-epsilon expression over different time periods. Furthermore, our evidence suggests that IL-1 beta induction of PKC-epsilon, but not PKC-delta, may occur via the PI 3-kinase pathway. Copyright 2001 S. Karger AG, Basel

Numerical simulation of heat transfer to separation tio2/water nanofluids flow in an asymmetric abrupt expansion

NASA Astrophysics Data System (ADS)

Oon, Cheen Sean; Nee Yew, Sin; Chew, Bee Teng; Salim Newaz, Kazi Md; Al-Shamma'a, Ahmed; Shaw, Andy; Amiri, Ahmad

2015-05-01

Flow separation and reattachment of 0.2% TiO2 nanofluid in an asymmetric abrupt expansion is studied in this paper. Such flows occur in various engineering and heat transfer applications. Computational fluid dynamics package (FLUENT) is used to investigate turbulent nanofluid flow in the horizontal double-tube heat exchanger. The meshing of this model consists of 43383 nodes and 74891 elements. Only a quarter of the annular pipe is developed and simulated as it has symmetrical geometry. Standard k-epsilon second order implicit, pressure based-solver equation is applied. Reynolds numbers between 17050 and 44545, step height ratio of 1 and 1.82 and constant heat flux of 49050 W/m2 was utilized in the simulation. Water was used as a working fluid to benchmark the study of the heat transfer enhancement in this case. Numerical simulation results show that the increase in the Reynolds number increases the heat transfer coefficient and Nusselt number of the flowing fluid. Moreover, the surface temperature will drop to its lowest value after the expansion and then gradually increase along the pipe. Finally, the chaotic movement and higher thermal conductivity of the TiO2 nanoparticles have contributed to the overall heat transfer enhancement of the nanofluid compare to the water.

Simulation of action potentials from metabolically impaired cardiac myocytes. Role of ATP-sensitive K+ current.

PubMed

Ferrero, J M; Sáiz, J; Ferrero, J M; Thakor, N V

1996-08-01

The role of the ATP-sensitive K+ current (IK-ATP) and its contribution to electrophysiological changes that occur during metabolic impairment in cardiac ventricular myocytes is still being discussed. The aim of this work was to quantitatively study this issue by using computer modeling. A model of IK-ATP is formulated and incorporated into the Luo-Rudy ionic model of the ventricular action potential. Action potentials under different degrees of activation of IK-ATP are simulated. Our results show that in normal ionic concentrations, only approximately 0.6% of the KATP channels, when open, should account for a 50% reduction in action potential duration. However, increased levels of intracellular Mg2+ counteract this shortening. Under conditions of high [K+]0, such as those found in early ischemia, the activation of only approximately 0.4% of the KATP channels could account for a 50% reduction in action potential duration. Thus, our results suggest that opening of IK-ATP channels should play a significant role in action potential shortening during hypoxic/ischemic episodes, with the fraction of open channels involved being very low ( < 1%). However, the results of the model suggest that activation of IK-ATP alone does not quantitatively account for the observed K+ efflux in metabolically impaired cardiac myocytes. Mechanisms other than KATP channel activation should be responsible for a significant part of the K+ efflux measured in hypoxic/ischemic situations.

Spectrophotometry of Epsilon Aur, 3295-8880 A

NASA Technical Reports Server (NTRS)

Lockwood, G. W.; Thompson, D. T.; Lutz, B. L.; Sowell, J.

1985-01-01

Spectrophotometric scans were obtained at 8 A resolution from 3295 to 8880 A on twenty nights before, during, and after the recent eclipse of epsilon Aurigae, beginning with a pre-eclipse observation on 5 March 1982 U.T. The observations were reduced to absolute flux using the standard stars 109 Vir or xi(2) Ceti. The data confirm that the eclipse is essentially gray over the entire visible spectrum, as others have noted from broadband photometry. High resolution echellograms (450 to 6700 A) made through mid-eclipse and the scans show changes in the equivalent widths of H alpha, Na D, and O I as large as a factor of two.

The 1982-1984 Eclipse of Epsilon Aurigae

NASA Technical Reports Server (NTRS)

Stencel, R. E. (Editor)

1985-01-01

A workshop proceedings concerned with the new data collected during the 1982-1984 eclipse period of the 27-year system Epsilon Aurigae is presented. This binary star has been a classic problem in astrophysics because the opaque eclipsing object is nonstellar, and probably disk shaped. Invited papers concerning the history of the system, optical, infrared and ultraviolet photometry, optical polarimetry and ultraviolet spectroscopy are included. An invited paper concerning comprehensive theoretical interpretation in the context of stellar evolution also is included. The information collected herein is unparalleled in scope and will remain a standard reference until the next eclipse cycle in the year 2009 A.D., in all probability.

The Students' Take on the Epsilon-Delta Definition of a Limit

ERIC Educational Resources Information Center

Fernandez, Eileen

2004-01-01

This paper describes a sequence of lessons from two Calculus I classes for teaching the epsilon-delta definition of a limit. In these lessons, the author elicited students' misconceptions and perceptions of this definition through a reading/writing lesson and then used these student ideas to design a lesson aimed at addressing these misconceptions…

Apocenter Glow in Eccentric Debris Disks: Implications for Fomalhaut and Epsilon Eridani

NASA Technical Reports Server (NTRS)

Pan, Margaret; Nesvold, Erika R.; Kuchner, Marc J.

2016-01-01

Debris disks often take the form of eccentric rings with azimuthal asymmetries in surface brightness. Such disks are often described as showing pericenter glow, an enhancement of the disk brightness in regions nearest the central star. At long wavelengths, however, the disk apocenters should appear brighter than their pericenters: in the long-wavelength limit, we find that the apocenter pericenter flux ratio scales as 1 + e for disk eccentricity e. We produce new models of this apocenter glow to explore its causes and wavelength dependence and study its potential as a probe of dust grain properties. Based on our models, we argue that several far-infrared and (sub)millimeter images of the Fomalhaut and Epsilon Eridani debris rings obtained with Herschel, JCMT, SHARC II, ALMA, and ATCA should be reinterpreted as suggestions or examples of apocenter glow. This reinterpretation yields new constraints on the disks dust grain properties and size distributions.

A Realizable Reynolds Stress Algebraic Equation Model

NASA Technical Reports Server (NTRS)

Shih, Tsan-Hsing; Zhu, Jiang; Lumley, John L.

1993-01-01

The invariance theory in continuum mechanics is applied to analyze Reynolds stresses in high Reynolds number turbulent flows. The analysis leads to a turbulent constitutive relation that relates the Reynolds stresses to the mean velocity gradients in a more general form in which the classical isotropic eddy viscosity model is just the linear approximation of the general form. On the basis of realizability analysis, a set of model coefficients are obtained which are functions of the time scale ratios of the turbulence to the mean strain rate and the mean rotation rate. The coefficients will ensure the positivity of each component of the mean rotation rate. These coefficients will ensure the positivity of each component of the turbulent kinetic energy - realizability that most existing turbulence models fail to satisfy. Separated flows over backward-facing step configurations are taken as applications. The calculations are performed with a conservative finite-volume method. Grid-independent and numerical diffusion-free solutions are obtained by using differencing schemes of second-order accuracy on sufficiently fine grids. The calculated results are compared in detail with the experimental data for both mean and turbulent quantities. The comparison shows that the present proposal significantly improves the predictive capability of K-epsilon based two equation models. In addition, the proposed model is able to simulate rotational homogeneous shear flows with large rotation rates which all conventional eddy viscosity models fail to simulate.

Broadband Epsilon-near-Zero Reflectors Enhance the Quantum Efficiency of Thin Solar Cells at Visible and Infrared Wavelengths.

PubMed

Labelle, A J; Bonifazi, M; Tian, Y; Wong, C; Hoogland, S; Favraud, G; Walters, G; Sutherland, B; Liu, M; Li, Jun; Zhang, Xixiang; Kelley, S O; Sargent, E H; Fratalocchi, A

2017-02-15

The engineering of broadband absorbers to harvest white light in thin-film semiconductors is a major challenge in developing renewable materials for energy harvesting. Many solution-processed materials with high manufacturability and low cost, such as semiconductor quantum dots, require the use of film structures with thicknesses on the order of 1 μm to absorb incoming photons completely. The electron transport lengths in these media, however, are 1 order of magnitude smaller than this length, hampering further progress with this platform. Herein, we show that, by engineering suitably disordered nanoplasmonic structures, we have created a new class of dispersionless epsilon-near-zero composite materials that efficiently harness white light. Our nanostructures localize light in the dielectric region outside the epsilon-near-zero material with characteristic lengths of 10-100 nm, resulting in an efficient system for harvesting broadband light when a thin absorptive film is deposited on top of the structure. By using a combination of theory and experiments, we demonstrate that ultrathin layers down to 50 nm of colloidal quantum dots deposited atop the epsilon-near-zero material show an increase in broadband absorption ranging from 200% to 500% compared to a planar structure of the same colloidal quantum-dot-absorber average thickness. When the epsilon-near-zero nanostructures were used in an energy-harvesting module, we observed a spectrally averaged 170% broadband increase in the external quantum efficiency of the device, measured at wavelengths between 400 and 1200 nm. Atomic force microscopy and photoluminescence excitation measurements demonstrate that the properties of these epsilon-near-zero structures apply to general metals and could be used to enhance the near-field absorption of semiconductor structures more widely. We have developed an inexpensive electrochemical deposition process that enables scaled-up production of this nanomaterial for large

A network model for biofilm development in Escherichia coli K-12.

PubMed

Shalá, Andrew A; Restrepo, Silvia; González Barrios, Andrés F

2011-09-22

In nature, bacteria often exist as biofilms. Biofilms are communities of microorganisms attached to a surface. It is clear that biofilm-grown cells harbor properties remarkably distinct from planktonic cells. Biofilms frequently complicate treatments of infections by protecting bacteria from the immune system, decreasing antibiotic efficacy and dispersing planktonic cells to distant body sites. In this work, we employed enhanced Boolean algebra to model biofilm formation. The network obtained describes biofilm formation successfully, assuming - in accordance with the literature - that when the negative regulators (RscCD and EnvZ/OmpR) are off, the positive regulator (FlhDC) is on. The network was modeled under three different conditions through time with satisfactory outcomes. Each cluster was constructed using the K-means/medians Clustering Support algorithm on the basis of published Affymetrix microarray gene expression data from biofilm-forming bacteria and the planktonic state over four time points for Escherichia coli K-12. The different phenotypes obtained demonstrate that the network model of biofilm formation can simulate the formation or repression of biofilm efficiently in E. coli K-12.

RANS Simulation (Virtual Blade Model [VBM]) of Single Full Scale DOE RM1 MHK Turbine

DOE Data Explorer

Javaherchi, Teymour; Aliseda, Alberto

2013-04-10

Attached are the .cas and .dat files along with the required User Defined Functions (UDFs) and look-up table of lift and drag coefficients for Reynolds Averaged Navier-Stokes (RANS) simulation of a single full scale DOE RM1 turbine implemented in ANSYS FLUENT CFD-package. In this case study the flow field around and in the wake of the full scale DOE RM1 turbine is simulated using Blade Element Model (a.k.a Virtual Blade Model) by solving RANS equations coupled with k-\\omega turbulence closure model. It should be highlighted that in this simulation the actual geometry of the rotor blade is not modeled. The effect of turbine rotating blades are modeled using the Blade Element Theory. This simulation provides an accurate estimate for the performance of device and structure of it's turbulent far wake. Due to the simplifications implemented for modeling the rotating blades in this model, VBM is limited to capture details of the flow field in near wake region of the device.

A Simulation-Optimization Model for the Management of Seawater Intrusion

NASA Astrophysics Data System (ADS)

Stanko, Z.; Nishikawa, T.

2012-12-01

Seawater intrusion is a common problem in coastal aquifers where excessive groundwater pumping can lead to chloride contamination of a freshwater resource. Simulation-optimization techniques have been developed to determine optimal management strategies while mitigating seawater intrusion. The simulation models are often density-independent groundwater-flow models that may assume a sharp interface and/or use equivalent freshwater heads. The optimization methods are often linear-programming (LP) based techniques that that require simplifications of the real-world system. However, seawater intrusion is a highly nonlinear, density-dependent flow and transport problem, which requires the use of nonlinear-programming (NLP) or global-optimization (GO) techniques. NLP approaches are difficult because of the need for gradient information; therefore, we have chosen a GO technique for this study. Specifically, we have coupled a multi-objective genetic algorithm (GA) with a density-dependent groundwater-flow and transport model to simulate and identify strategies that optimally manage seawater intrusion. GA is a heuristic approach, often chosen when seeking optimal solutions to highly complex and nonlinear problems where LP or NLP methods cannot be applied. The GA utilized in this study is the Epsilon-Nondominated Sorted Genetic Algorithm II (ɛ-NSGAII), which can approximate a pareto-optimal front between competing objectives. This algorithm has several key features: real and/or binary variable capabilities; an efficient sorting scheme; preservation and diversity of good solutions; dynamic population sizing; constraint handling; parallelizable implementation; and user controlled precision for each objective. The simulation model is SEAWAT, the USGS model that couples MODFLOW with MT3DMS for variable-density flow and transport. ɛ-NSGAII and SEAWAT were efficiently linked together through a C-Fortran interface. The simulation-optimization model was first tested by using a

Inference of turbulence parameters from a ROMS simulation using the k-ε closure scheme

NASA Astrophysics Data System (ADS)

Thyng, Kristen M.; Riley, James J.; Thomson, Jim

2013-12-01

Comparisons between high resolution turbulence data from Admiralty Inlet, WA (USA), and a 65-meter horizontal grid resolution simulation using the hydrostatic ocean modelling code, Regional Ocean Modeling System (ROMS), show that the model's k-ε turbulence closure scheme performs reasonably well. Turbulent dissipation rates and Reynolds stresses agree within a factor of two, on average. Turbulent kinetic energy (TKE) also agrees within a factor of two, but only for motions within the observed inertial sub-range of frequencies (i.e., classic approximately isotropic turbulence). TKE spectra from the observations indicate that there is significant energy at lower frequencies than the inertial sub-range; these scales are not captured by the model closure scheme nor the model grid resolution. To account for scales not present in the model, the inertial sub-range is extrapolated to lower frequencies and then integrated to obtain an inferred, diagnostic total TKE, with improved agreement with the observed total TKE. The realistic behavior of the dissipation rate and Reynolds stress, combined with the adjusted total TKE, imply that ROMS simulations can be used to understand and predict spatial and temporal variations in turbulence. The results are suggested for application to siting tidal current turbines.

Advancements in engineering turbulence modeling

NASA Technical Reports Server (NTRS)

Shih, T.-H.

1991-01-01

Some new developments in two-equation models and second order closure models are presented. Two-equation models (k-epsilon models) have been widely used in computational fluid dynamics (CFD) for engineering problems. Most of low-Reynolds number two-equation models contain some wall-distance damping functions to account for the effect of wall on turbulence. However, this often causes the confusion and difficulties in computing flows with complex geometry and also needs an ad hoc treatment near the separation and reattachment points. A set of modified two-equation models is proposed to remove the aforementioned shortcomings. The calculations using various two-equation models are compared with direct numerical simulations of channel flow and flat boundary layers. Development of a second order closure model is also discussed with emphasis on the modeling of pressure related correlation terms and dissipation rates in the second moment equations. All the existing models poorly predict the normal stresses near the wall and fail to predict the 3-D effect of mean flow on the turbulence (e.g. decrease in the shear stress caused by the cross flow in the boundary layer). The newly developed second order near-wall turbulence model is described and is capable of capturing the near-wall behavior of turbulence as well as the effect of 3-D mean flow on the turbulence.

Resonances in the optical response of a slab with time-periodic dielectric function {epsilon}(t)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zurita-Sanchez, Jorge R.; Halevi, P.

2010-05-15

We demonstrate that the optical response of a periodically modulated dynamic slab exhibits infinite resonances for frequencies {omega}=({Omega}/2)(2l+1), namely, odd multiples of one-half of the modulating frequency {Omega} of the dielectric function {epsilon}(t). These frequencies coincide partially with the usual condition of parametric amplification. However, the resonances occur only for certain normalized slab thicknesses L{sub R}. These resonances follow from detailed numerical studies based on our recent paper [Zurita-Sanchez, Halevi, and Cervantes-Gonzalez, Phys. Rev. A 79, 053821 (2009)]. As the thickness L nearly matches a resonance thickness L{sub R}, the amplitudes of counterpropagating modes in the slab obey a conditionmore » implying that both have the same modulus and their phases match a condition related to L{sub R} and the bulk wave vectors. When this condition is met, the electric field profile inside the slab is a superposition of standing waves with odd and even symmetries, and the reflection and transmission coefficients can reach great values and become infinite at exact resonance. Numerical simulations of the optical response are shown for a sinusoidal {epsilon}(t) with either moderate or strong modulation. As expected, as the modulation strength increases, higher-order harmonics {omega}-n{Omega} (n=0,{+-}1,{+-}2,...) become more noticeable, and short-wavelength bulk modes contribute significantly. However, we found that, regardless of the excitation frequency {omega}=({Omega}/2)(2l+1), the dominant spectral component of the generated fields is {Omega}/2. Also, as the excitation frequency increases, the parity of the standing waves is conserved.« less

Comparative analysis of biological activities of Der p I-derived peptides on Fc epsilon receptor-bearing cells from Dermatophagoides pteronyssinus-sensitive patients.

PubMed Central

Jeannin, P; Pestel, J; Bossus, M; Lassalle, P; Tartar, A; Tonnel, A B

1993-01-01

The ability of four uncoupled synthetic peptides (p52-71, p117-133, p176-187, p188-199) derived from Der p I, a major allergen from the house dust mite Dermatophagoides pteronyssinus (Dpt) to stimulate Fc epsilon R+ cells from Dpt-sensitive patients was comparatively analysed. Each free peptide may specifically stimulate basophils (Fc epsilon RI+ cells) and platelets (Fc epsilon RII+ cells) from patients with significant levels of anti-Der p I IgE antibodies; p52-71 and p117-133 appear the best cell stimulation inducers. Both concentration-dependent biological activities of Der p I-peptide on Fc epsilon R+ cells are enhanced by coupling peptide to a carrier (as human serum albumin). Interestingly each Der p I-sensitive patient tested presents an individual pattern of response to peptide. Thus, from our results it appears that different Der p I sequences could be involved in the immune response to Der p I. PMID:7682161

Comparative analysis of biological activities of Der p I-derived peptides on Fc epsilon receptor-bearing cells from Dermatophagoides pteronyssinus-sensitive patients.

PubMed

Jeannin, P; Pestel, J; Bossus, M; Lassalle, P; Tartar, A; Tonnel, A B

1993-04-01

The ability of four uncoupled synthetic peptides (p52-71, p117-133, p176-187, p188-199) derived from Der p I, a major allergen from the house dust mite Dermatophagoides pteronyssinus (Dpt) to stimulate Fc epsilon R+ cells from Dpt-sensitive patients was comparatively analysed. Each free peptide may specifically stimulate basophils (Fc epsilon RI+ cells) and platelets (Fc epsilon RII+ cells) from patients with significant levels of anti-Der p I IgE antibodies; p52-71 and p117-133 appear the best cell stimulation inducers. Both concentration-dependent biological activities of Der p I-peptide on Fc epsilon R+ cells are enhanced by coupling peptide to a carrier (as human serum albumin). Interestingly each Der p I-sensitive patient tested presents an individual pattern of response to peptide. Thus, from our results it appears that different Der p I sequences could be involved in the immune response to Der p I.

Dielectric properties and the monoclinictriclinic inversion in albite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ho, P.; Duba, A.; Piwinskii, A.J.

1976-12-01

Dielectric properties (epsilon', real part of complex permittivity; epsilon'', imaginary part of complex permittivity; tan delta, loss tangent = epsilon''/epsilon') of single crystal Amelia albite have been measured parallel to the b-axis under controlled oxygen fugacity near the QFM buffer in the temperature range 1000 to 1373/sup 0/K at frequencies (..nu..) of 0.2 to 10 kHz. Plots of epsilon' and epsilon'' as a function of temperature exhibit minima which depend on time and ..nu.. in this albite. In addition, plots of tan delta as a function of temperature develop maxima which are also time-dependent. When epsilon', epsilon'', and tan deltamore » were investigated between 1220 and 1320/sup 0/K as a function of time, a break in these dielectric parameters with temperature was found. Epsilon' and epsilon'' increased with time above this break, while they decreased with time below the break. Values of loss tangent were also non-linear functions of temperature. Epsilon' and epsilon'' minima, tan delta maxima, and the temperature break in these dielectric properties were found to converge at approximately 1283/sup 0/K as time increases. Assuming that the epsilon' and epsilon'' increase and the tan delta decrease are the result of increasing disorder in this albite, these experimental data suggest that 1283 +- 20/sup 0/K is the temperature of the monoclinic-triclinic transition in this albite. This agrees well with electrical conductivity results which indicate 1253 +- 30/sup 0/K.« less

Interacting hadron resonance gas model in the K -matrix formalism

NASA Astrophysics Data System (ADS)

Dash, Ashutosh; Samanta, Subhasis; Mohanty, Bedangadas

2018-05-01

An extension of hadron resonance gas (HRG) model is constructed to include interactions using relativistic virial expansion of partition function. The noninteracting part of the expansion contains all the stable baryons and mesons and the interacting part contains all the higher mass resonances which decay into two stable hadrons. The virial coefficients are related to the phase shifts which are calculated using K -matrix formalism in the present work. We have calculated various thermodynamics quantities like pressure, energy density, and entropy density of the system. A comparison of thermodynamic quantities with noninteracting HRG model, calculated using the same number of hadrons, shows that the results of the above formalism are larger. A good agreement between equation of state calculated in K -matrix formalism and lattice QCD simulations is observed. Specifically, the lattice QCD calculated interaction measure is well described in our formalism. We have also calculated second-order fluctuations and correlations of conserved charges in K -matrix formalism. We observe a good agreement of second-order fluctuations and baryon-strangeness correlation with lattice data below the crossover temperature.

Parametric Modeling Investigation of a Radially-Staged Low-Emission Aviation Combustor

NASA Technical Reports Server (NTRS)

Heath, Christopher M.

2016-01-01

Aviation gas-turbine combustion demands high efficiency, wide operability and minimal trace gas emissions. Performance critical design parameters include injector geometry, combustor layout, fuel-air mixing and engine cycle conditions. The present investigation explores these factors and their impact on a radially staged low-emission aviation combustor sized for a next-generation 24,000-lbf-thrust engine. By coupling multi-fidelity computational tools, a design exploration was performed using a parameterized annular combustor sector at projected 100% takeoff power conditions. Design objectives included nitrogen oxide emission indices and overall combustor pressure loss. From the design space, an optimal configuration was selected and simulated at 7.1, 30 and 85% part-power operation, corresponding to landing-takeoff cycle idle, approach and climb segments. All results were obtained by solution of the steady-state Reynolds-averaged Navier-Stokes equations. Species concentrations were solved directly using a reduced 19-step reaction mechanism for Jet-A. Turbulence closure was obtained using a nonlinear K-epsilon model. This research demonstrates revolutionary combustor design exploration enabled by multi-fidelity physics-based simulation.

Redetermination of the Sm-Nd Age and Initial (Epsilon)Nd of Lunar Troctolite 76535: Implications for Lunar Crustal Development

NASA Technical Reports Server (NTRS)

Nyquist, Laurence E.; Shih, C.-Y.; Reese, Y. D.

2012-01-01

Lunar troctolite 76535 is an old lunar rock predating the era of the lunar cataclysmic bombardment, but its radiometrially determined ages have been discordant [1-3]. The most recent multi-chronometer study [4] gave preferred ages of 4226+/-35 Ma and 4236+/-15 Ma from a Pb-207/Pb-206 isochron and an U-Pb upper concordia intercept, resp. We derive an age of 4323+/-64 Ma from Sm-Nd data reported by [4] for the bulk rock and three mineral separates. They derived an age of approx.4.38 Ga from combined Rb-Sr data [3,4] by omitting data for olivine separates. Ar-39-Ar-40 ages of approx.4.2 Ga are summarized by [5]. New Sm-147-Nd-143 data presented here give an age of 4335+/-71 Ma in agreement with the Sm-Nd age from [4], whereas Sm-146-Nd-142 data give a model age T(sub LEW) = 4439+/-22 Ma. Further, initial (Epsilon)Nd-143 for 76535 conforms to the Nd-143 evolution expected in an urKREEP [6] reservoir, consistent with inheritance of urKREEP Sm-Nd systematics via assimilation. We show that urKREEP Sm-Nd systematics require the lunar initial (Epsilon)Nd-143 to exceed the Chondritic Uniform Reservoir (CHUR) value [7], but are consistent with evolution from initial (Epsilon)Nd-143 like that of the HED meteorite parent body as defined by a 4557+/-20 Ma internal isochron for the cumulate eucrites Y-980433 and Y- 980318 [8].

Three-dimensional modeling of air flow and pollutant dispersion in an urban street canyon with thermal effects.

PubMed

Tsai, Mong-Yu; Chen, Kang-Shin; Wu, Chung-Hsing

2005-08-01

Effects of excess ground and building temperatures on airflow and dispersion of pollutants in an urban street canyon with an aspect ratio of 0.8 and a length-to-width ratio of 3 were investigated numerically. Three-dimensional governing equations of mass, momentum, energy, and species were modeled using the RNG k-epsilon turbulence model and Boussinesq approximation, which were solved using the finite volume method. Vehicle emissions were estimated from the measured traffic flow rates and modeled as banded line sources, with a street length and bandwidths equal to typical vehicle widths. Both measurements and simulations reveal that pollutant concentrations typically follow the traffic flow rate; they decline as the height increases and are higher on the leeward side than on the windward side. Three-dimensional simulations reveal that the vortex line, joining the centers of cross-sectional vortexes of the street canyon, meanders between street buildings and shifts toward the windward side when heating strength is increased. Thermal boundary layers are very thin. Entrainment of outside air increases, and pollutant concentration decreases with increasing heating condition. Also, traffic-produced turbulence enhances the turbulent kinetic energy and the mixing of temperature and admixtures in the canyon. Factors affecting the inaccuracy of the simulations are addressed.

The Properties of the local Interstellar Medium and the Interaction of the Stellar Winds of epsilon Indi and lambda Andromedae with the Interstellar Environment

NASA Technical Reports Server (NTRS)

Wood, Brian E.; Alexander, William R.; Linsky, Jeffrey L.

1996-01-01

We present new observations of the Ly alpha lines of Epsilon Indi (K5 5) and A Andromedae (G8 4-3 + ?) These data were obtained by the Goddard High Resolution Spectrograph (GHRS) on the Hubble Space Telescope. Analysis of the interstellar H 1 and D 1 absorption lines reveals that the velocities and temperatures inferred from the H 1 lines are inconsistent with the parameters inferred from the D 1 lines, unless the H 1 absorption is assumed to be produced by two absorption components. One absorption component is produced by interstellar material. For both lines of sight observed, the velocity of this component is consistent with the velocity predicted by the local flow vector. For the Epsilon Indi data, the large velocity separation between the stellar emission and the interstellar absorption allows us to measure the H 1 column density independent of the shape of the intrinsic stellar Ly alpha profile. This approach permits us to quote an accurate column density and to assess its uncertainty with far more confidence than in previous analyses, for which the errors were dominated by uncertainties in the assumed stellar profiles.

Epsilon wave on an electronic loop in a case of arrhythmogenic right ventricular dysplasia with myocarditis: an updated definition of the Epsilon wave.

PubMed

Fontaine, Guy Hugues; Duthoit, Guillaume; Li, Guoliang; Andreoletti, L; Gandjbakhch, Estelle; Frank, Robert

2017-07-01

A young man presented with a history of myocarditis with palpitations and dizziness. He had implantation of a loop recorder that showed repetitive short episodes of VT. In addition, there were fragmented potentials immediately following the large and sharp electrograms (EGMs) before as well as after episodes of VT suggesting an Epsilon wave. This signal can be observed in multiple cardiac conditions including coronary artery disease. It was originally recorded on the epicardium as well as on the endocardium. However, in ARVD it can be defined as an electric signal observed after the end of the QRS complex in the right as opposed to the left precordial leads (difference ≥ 25 ms). It can also be an aid to the diagnosis of patients with ARVD who have other signs or symptoms suggesting ARVD including episodes of myocarditis. This potential consists of a slurring at the end of the QRS complex or an independent potential after the return to the isoelectric line. It can be better observed by increasing amplification of the ECG tracing as well as double speed using the Fontaine lead system. Epsilon wave too small to be recorded on the standard ECG can be extracted by Signal Averaging ECG SAECG). Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2017. For Permissions, please email: journals.permissions@oup.com.

A Compact Synchronous Cellular Model of Nonlinear Calcium Dynamics: Simulation and FPGA Synthesis Results.

PubMed

Soleimani, Hamid; Drakakis, Emmanuel M

2017-06-01

Recent studies have demonstrated that calcium is a widespread intracellular ion that controls a wide range of temporal dynamics in the mammalian body. The simulation and validation of such studies using experimental data would benefit from a fast large scale simulation and modelling tool. This paper presents a compact and fully reconfigurable cellular calcium model capable of mimicking Hopf bifurcation phenomenon and various nonlinear responses of the biological calcium dynamics. The proposed cellular model is synthesized on a digital platform for a single unit and a network model. Hardware synthesis, physical implementation on FPGA, and theoretical analysis confirm that the proposed cellular model can mimic the biological calcium behaviors with considerably low hardware overhead. The approach has the potential to speed up large-scale simulations of slow intracellular dynamics by sharing more cellular units in real-time. To this end, various networks constructed by pipelining 10 k to 40 k cellular calcium units are compared with an equivalent simulation run on a standard PC workstation. Results show that the cellular hardware model is, on average, 83 times faster than the CPU version.

Antibody response to the epsilon toxin of Clostridium perfringens following vaccination of Lama glama crias.

PubMed

Bentancor, Adriana B; Halperin, Pablo; Flores, Myriam; Iribarren, Fabián

2009-09-15

Enterotoxaemia produced by Clostridium perfringens A, C and D is an important cause of mortality in young llamas. There is no data on antibody responses following vaccination with epsilon toxin. Twenty-six L. glama crias were divided into four groups which were vaccinated with a commercial vaccine (Mancha Gangrena Enterotoxemia, Instituto Rosembusch Sociedad Anónima, Argentina) on days 0, 21 and 42 or left as unvaccinated controls. An indirect ELISA was compared with the mouse neutralization test (MNT) for measuring titers to C. perfringens type D epsilon toxin and used to determine titers in sera taken before vaccination and 16, 28, 49, 59, and 93 days later. The ELISA gave comparable results to the MNT and showed animals vaccinated once failed to develop raised titers. A week following a second vaccination, mean antibody titers rose significantly (P < 0.05) and 7/12 animals developed high titers which were present in only one animal at the end of the study (day 93). A third vaccination resulted in a decrease in mean antibody titers a week later. Llamas develop antibodies to Clostridium perfringens type D epsilon toxin after two vaccinations at a 21-day interval. Further studies are indicated to determine if these inoculations protect against enterotoxemia and the most appropriate vaccination schedule.

Epsilon Aurigae Eclipse 2009 - Ingress

NASA Astrophysics Data System (ADS)

Hopkins, Jeffrey L.; Stencel, Robert E.; Leadbeater, Robin; Beckmann, Paul J.; Buil, Christian; Collins, Donald; Colombo, Tiziano; Garrel, Thierry; Gorodenski, Stanley; Gudmundsson, Snaevarr; Karlsson, Mukund Kurtadikar; Lindberg, Hans-Goran; Loughney, Des; Mauclaire, Benji; McCandless, Brian E.; Melillo, Frank J.; Miles, Richard; Pearson, Robert T.; Samolyk, Gerard; Schanne, Lothar; Strikis, Iakovos Marios; Teyssier, François; Thizy, Olivier

The mysterious star system epsilon Aurigae undergoes an eclipse every 27.1 years that lasts nearly two years. The most recent eclipse started during the late summer of 2009. An international campaign for observing this eclipse was created in 2006, with a web site for information and, to-date, 17 periodic newsletters for details, as well as a Yahoo forum List for immediate announcements and comments. Photometric data in the UBVRIJH bands have been submitted. Ingress occurred with first contact in the V band estimated at the second week of 2009 August and second contact estimated at 2010 mid-January. Spectroscopic data were also obtained during ingress. Spectroscopic data have been provided in the potassium I region, hydrogen alpha and beta regions and sodium D line region of the star system's spectrum. In this paper we describe details of observations and preliminary analysis during ingress and second contact. We introduce the observers and discuss plans for observing throughout totality and the end of the eclipse in 2011.

Numerical Simulation of MIG for 42 GHz, 200 kW Gyrotron

NASA Astrophysics Data System (ADS)

Singh, Udaybir; Bera, Anirban; Kumar, Narendra; Purohit, L. P.; Sinha, Ashok K.

2010-06-01

A triode type magnetron injection gun (MIG) of a 42 GHz, 200 kW gyrotron for an Indian TOKAMAK system is designed by using the commercially available code EGUN. The operating voltages of the modulating anode and the accelerating anode are 29 kV and 65 kV respectively. The operating mode of the gyrotron is TE03 and it is operated in fundamental harmonic. The simulated results of MIG obtained with the EGUN code are validated with another trajectory code TRAK.

Comparisons of Simulated and Observed Sub-Auroral Polarization Stream (SAPS) during the 17 March 2013 Storm

NASA Astrophysics Data System (ADS)

Chen, M.; Lemon, C.; Sazykin, S. Y.; Wolf, R.; Anderson, P. C.

2016-12-01

Sub-Auroral Polarization Streams (SAPS), characterized by large subauroral E x B velocities that span from dusk to the early morning sector for high magnetic activity, result from strong magnetosphere-ionosphere coupling. We investigate how electron and ion precipitation and the ionospheric conductance affect the simulated development of the SAPS electric field for the 17 March 2013 storm. Our approach is to use the magnetically and electrically self-consistent Rice Convection Model - Equilibrium (RCM-E) of the inner magnetosphere to simulate the SAPS. We use parameterized rates of whistler-generated electron pitch-angle scattering from Orlova and Shprits [JGR, 2014] that depend on equatorial radial distance, magnetic activity (Kp), and magnetic local time (MLT) outside the simulated plasmasphere. Inside the plasmasphere, parameterized scattering rates due to hiss [Orlova et al., GRL, 2014] are used. Ions are scattered at a fraction of strong pitch-angle scattering where the fraction is scaled by epsilon, the ratio of the gyroradius to the field-line radius of curvature, when epsilon is greater than 0.1. The electron and proton contributions to the auroral conductance in the RCM-E are calculated using the empirical Robinson et al. [JGR, 1987] and Galand and Richmond [JGR, 2001] equations, respectively. The "background" ionospheric conductance is based on parameters from the International Reference Ionosphere [Bilitza and Reinisch, JASR, 2008] but modified to include the effect of specified ionospheric troughs. Parameterized simulations will aid in understanding the underlying physical process. We compare simulated precipitating particle energy flux and E x B velocities with DMSP observations where SAPS are observed during the 17 March 2013 storm. Analysis of discerpancies between the simulation results and data will aid us in assessing needed improvements in the model.

An investigation into the numerical prediction of boundary layer transition using the K.Y. Chien turbulence model

NASA Technical Reports Server (NTRS)

Stephens, Craig A.; Crawford, Michael E.

1990-01-01

Assessments were made of the simulation capabilities of transition models developed at the University of Minnesota, as applied to the Launder-Sharma and Lam-Bremhorst two-equation turbulence models, and at The University of Texas at Austin, as applied to the K. Y. Chien two-equation turbulence model. A major shortcoming in the use of the basic K. Y. Chien turbulence model for low-Reynolds number flows was identified. The problem with the Chien model involved premature start of natural transition and a damped response as the simulation moved to fully turbulent flow at the end of transition. This is in contrast to the other two-equation turbulence models at comparable freestream turbulence conditions. The damping of the transition response of the Chien turbulence model leads to an inaccurate estimate of the start and end of transition for freestream turbulence levels greater than 1.0 percent and to difficulty in calculating proper model constants for the transition model.

Transepithelial glucose transport and Na+/K+ homeostasis in enterocytes: an integrative model

PubMed Central

Drengstig, Tormod; Ruoff, Peter

2014-01-01

The uptake of glucose and the nutrient coupled transcellular sodium traffic across epithelial cells in the small intestine has been an ongoing topic in physiological research for over half a century. Driving the uptake of nutrients like glucose, enterocytes must have regulatory mechanisms that respond to the considerable changes in the inflow of sodium during absorption. The Na-K-ATPase membrane protein plays a major role in this regulation. We propose the hypothesis that the amount of active Na-K-ATPase in enterocytes is directly regulated by the concentration of intracellular Na+ and that this regulation together with a regulation of basolateral K permeability by intracellular ATP gives the enterocyte the ability to maintain ionic Na+/K+ homeostasis. To explore these regulatory mechanisms, we present a mathematical model of the sodium coupled uptake of glucose in epithelial enterocytes. Our model integrates knowledge about individual transporter proteins including apical SGLT1, basolateral Na-K-ATPase, and GLUT2, together with diffusion and membrane potentials. The intracellular concentrations of glucose, sodium, potassium, and chloride are modeled by nonlinear differential equations, and molecular flows are calculated based on experimental kinetic data from the literature, including substrate saturation, product inhibition, and modulation by membrane potential. Simulation results of the model without the addition of regulatory mechanisms fit well with published short-term observations, including cell depolarization and increased concentration of intracellular glucose and sodium during increased concentration of luminal glucose/sodium. Adding regulatory mechanisms for regulation of Na-K-ATPase and K permeability to the model show that our hypothesis predicts observed long-term ionic homeostasis. PMID:24898586

Mutant RBL mast cells defective in Fc epsilon RI signaling and lipid raft biosynthesis are reconstituted by activated Rho-family GTPases.

PubMed

Field, K A; Apgar, J R; Hong-Geller, E; Siraganian, R P; Baird, B; Holowka, D

2000-10-01

Characterization of defects in a variant subline of RBL mast cells has revealed a biochemical event proximal to IgE receptor (Fc epsilon RI)-stimulated tyrosine phosphorylation that is required for multiple functional responses. This cell line, designated B6A4C1, is deficient in both Fc epsilon RI-mediated degranulation and biosynthesis of several lipid raft components. Agents that bypass receptor-mediated Ca(2+) influx stimulate strong degranulation responses in these variant cells. Cross-linking of IgE-Fc epsilon RI on these cells stimulates robust tyrosine phosphorylation but fails to mobilize a sustained Ca(2+) response. Fc epsilon RI-mediated inositol phosphate production is not detectable in these cells, and failure of adenosine receptors to mobilize Ca(2+) suggests a general deficiency in stimulated phospholipase C activity. Antigen stimulation of phospholipases A(2) and D is also defective. Infection of B6A4C1 cells with vaccinia virus constructs expressing constitutively active Rho family members Cdc42 and Rac restores antigen-stimulated degranulation, and active Cdc42 (but not active Rac) restores ganglioside and GPI expression. The results support the hypothesis that activation of Cdc42 and/or Rac is critical for Fc epsilon RI-mediated signaling that leads to Ca(2+) mobilization and degranulation. Furthermore, they suggest that Cdc42 plays an important role in the biosynthesis and expression of certain components of lipid rafts.

Strong seismic wave scattering beneath Kanto region derived from dense K-NET/KiK-net strong motion network and numerical simulation

NASA Astrophysics Data System (ADS)

Takemura, S.; Yoshimoto, K.

2013-12-01

Observed seismograms, which consist of the high-frequency body waves through the low-velocity (LV) region at depth of 20-40 km beneath northwestern Chiba in Kanto, show strong peak delay and spindle shape of S waves. By analyzing dense seismic records from K-NET/KiK-net, such spindle-shape S waves are clearly observed in the frequency range of 1-8 Hz. In order to investigate a specific heterogeneous structure to generate such observations, we conduct 3-D finite-difference method (FDM) simulation using realistic heterogeneous models and compare the simulation results with dense strong motion array observations. Our 3-D simulation model is covering the zone 150 km by 64 km in horizontal directions and 75 km in vertical direction, which has been discretized with uniform grid size 0.05 km. We assume a layered background velocity structure, which includes basin structure, crust, mantle and subducting oceanic plate, base on the model proposed by Koketsu et al. (2008). In order to introduce the effect of seismic wave scattering, we assume a stochastic random velocity fluctuation in each layer. Random velocity fluctuations are characterized by exponential-type auto-correlation function (ACF) with correlation distance a = 3 km and rms value of fluctuation e = 0.05 in the upper crust, a = 3 km and e = 0.07 in the lower crust, a = 10 km and e = 0.02 in the mantle. In the subducting oceanic plate, we assume an anisotropic random velocity fluctuation characterized by exponential-type ACF with aH = 10 km in horizontal direction, aZ = 0.5 km in vertical direction and e = 0.02 (e.g., Furumura and Kennett, 2005). In addition, we assume a LV zone at northeastern part of Chiba with depth of 20-40 km (e.g., Matsubara et al., 2004). In the LV zone, random velocity fluctuation characterized by Gaussian-type ACF with a = 1 km and e = 0.07 is superposed on exponential-type ACF with a = 3 km and e = 0.07, in order to modulate the S-wave propagation in the dominant frequency range of

Short peptides containing L-lysine and epsilon-aminocaproic acid as potential plasmin inhibitors.

PubMed

Purwin, M; Bruzgo, I; Markowska, A; Midura-Nowaczek, K

2009-11-01

Eight short peptides containing L-lysine and epsilon-aminocaproic acid were obtained and their effect on the amidolytic activities of plasmin, thrombin and trypsin was examined. Tripeptide amide Boc-EACA-L-Lys-EACA-NH2 was the most effective and specific plasmin inhibitor.

The apolipoprotein E epsilon4 allele and memory performance in HIV-1 seropositive subjects: differences at baseline but not after acute oral lorazepam challenge.

PubMed

Pomara, Nunzio; Belzer, Kenneth D; Silva, Raul; Cooper, Thomas B; Sidtis, John J

2008-11-01

The APOE epsilon4 allele, an established genetic risk factor for late-onset Alzheimer's disease, has been linked to an increased risk for dementia especially in older individuals with HIV-1 infection. This allele has also been associated with increased memory impairment following oral lorazepam challenge in healthy elderly. Lorazepam and other benzodiazepines are widely prescribed in individuals with HIV-1 infection who are at increased risk for cognitive impairment. The aim of this study was to examine if the epsilon4 allele influences lorazepam-induced memory deficits in this population. Forty-one non-demented, HIV-1 seropositive adults (15 epsilon4 carriers, mean age = 43.47 +/- 8.25; 26 epsilon4 non-carriers, mean age = 46.77 +/- 8.56) participated in a double-blind, placebo-controlled crossover design, receiving single acute oral doses of lorazepam 0.5, 1.0 mg, or placebo over three sessions, each 1 week apart. Standardized neuropsychological assessments, including measures of immediate and delayed verbal recall, were conducted at baseline and at 1, 2.5, and 5 h post-drug administration in each condition. Acute lorazepam administration produced dose- and time-dependent impairments in measures of verbal recall. However, the e4 allele did not modulate these adverse effects. An APOE epsilon4 group by time interaction was also found such that the APOE-epsilon4-positive subjects had significantly better immediate and delayed verbal recall than the negative subjects at baseline assessment, but the groups did not significantly differ at any subsequent time point. Future studies should clarify the role of epsilon4 in the modulation of drug-induced cognitive toxicity and baseline performance and their relationship to progressive decline, especially in older individuals with HIV-1 infection, a group at increased risk for dementia.

Benchmark studies of thermal jet mixing in SFRs using a two-jet model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Omotowa, O. A.; Skifton, R.; Tokuhiro, A.

To guide the modeling, simulations and design of Sodium Fast Reactors (SFRs), we explore and compare the predictive capabilities of two numerical solvers COMSOL and OpenFOAM in the thermal jet mixing of two buoyant jets typical of the outlet flow from a SFR tube bundle. This process will help optimize on-going experimental efforts at obtaining high resolution data for V and V of CFD codes as anticipated in next generation nuclear systems. Using the k-{epsilon} turbulence models of both codes as reference, their ability to simulate the turbulence behavior in similar environments was first validated for single jet experimental datamore » reported in literature. This study investigates the thermal mixing of two parallel jets having a temperature difference (hot-to-cold) {Delta}T{sub hc}= 5 deg. C, 10 deg. C and velocity ratios U{sub c}/U{sub h} = 0.5, 1. Results of the computed turbulent quantities due to convective mixing and the variations in flow field along the axial position are presented. In addition, this study also evaluates the effect of spacing ratio between jets in predicting the flow field and jet behavior in near and far fields. (authors)« less

Occultation of Epsilon Geminorum by Mars. II - The structure and extinction of the Martian upper atmosphere

NASA Technical Reports Server (NTRS)

Elliot, J. L.; French, R. G.; Dunham, E.; Gierasch, P. J.; Veverka, J.; Church, C.; Sagan, C.

1977-01-01

The occultation of Epsilon Geminorum by Mars on April 8, 1976, was observed at three wavelengths and 4-ms time resolution with the 91-cm telescope aboard NASA's G. P. Kuiper Airborne Observatory. Temperature, pressure, and number-density profiles of the Martian atmosphere were obtained for both the immersion and emersion events. Within the altitude range 50-80 km above the mean surface, the mean temperature is about 145 K, and the profiles exhibit wavelike structures with a peak-to-peak amplitude of 35 K and a vertical scale of about 20 km. The ratio of the refractivity of the atmosphere at 4500 A and 7500 A is consistent with the atmospheric composition measured by Viking 1. From the 'central flash' - a bright feature in the light curve midway between immersion and emersion - an optical depth at 4500 A of 3.3 + or - 1.7 per km atm (about 0.23 per equivalent Martian air mass) is found for the atmosphere about 25 km above the mean surface near the south polar region. This large value and its weak wavelength dependence rule out Rayleigh scattering as the principal cause of the observed extinction.

[The numerical simulation of the internal flow field inside the pressure generator of a continuous positive airway pressure ventilator].

PubMed

Cheng, Yunzhang; Zhu, Lihua; Zhang, Weiguo; Wu, Wenquan

2011-12-01

The problem of noise in ventilator has always been an important topic to study in the development of the ventilator. A great number of data are showing that there are still large gaps of research and application levels in noise control of the ventilator between China and some more advanced foreign countries. In this study, with cooperation of the Shanghai Medical Equipment Limited Liability Company, we used the computational fluid dynamics (CFD), software FLUENT, adopted the standard k-epsilon turbulence model and the SIMPLE algorithm to simulate the inner flow field of the continuous positive airway pressure (CPAP) ventilator's pressure generator. After a detailed analysis, we figured out that there are several deficiencies in this ventilator, like local reflow in volute, uneven velocity distribution and local negative pressure in inlet of the impeller, which easily lead to noise and affect the ventilator's performances. So, it needs to be improved to a certain extent.

Extending the modeling of the anisotropic galaxy power spectrum to k = 0.4 h Mpc{sup −1}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hand, Nick; Seljak, Uroš; Beutler, Florian

We present a model for the redshift-space power spectrum of galaxies and demonstrate its accuracy in describing the monopole, quadrupole, and hexadecapole of the galaxy density field down to scales of k = 0.4 h Mpc{sup −1}. The model describes the clustering of galaxies in the context of a halo model and the clustering of the underlying halos in redshift space using a combination of Eulerian perturbation theory and N -body simulations. The modeling of redshift-space distortions is done using the so-called distribution function approach. The final model has 13 free parameters, and each parameter is physically motivated rather thanmore » a nuisance parameter, which allows the use of well-motivated priors. We account for the Finger-of-God effect from centrals and both isolated and non-isolated satellites rather than using a single velocity dispersion to describe the combined effect. We test and validate the accuracy of the model on several sets of high-fidelity N -body simulations, as well as realistic mock catalogs designed to simulate the BOSS DR12 CMASS data set. The suite of simulations covers a range of cosmologies and galaxy bias models, providing a rigorous test of the level of theoretical systematics present in the model. The level of bias in the recovered values of f σ{sub 8} is found to be small. When including scales to k = 0.4 h Mpc{sup −1}, we find 15-30% gains in the statistical precision of f σ{sub 8} relative to k = 0.2 h Mpc{sup −1} and a roughly 10–15% improvement for the perpendicular Alcock-Paczynski parameter α{sub ⊥}. Using the BOSS DR12 CMASS mocks as a benchmark for comparison, we estimate an uncertainty on f σ{sub 8} that is ∼10–20% larger than other similar Fourier-space RSD models in the literature that use k ≤ 0.2 h Mpc{sup −1}, suggesting that these models likely have a too-limited parametrization.« less

Thermodynamic Modeling of Ag-Ni System Combining Experiments and Molecular Dynamic Simulation

NASA Astrophysics Data System (ADS)

Rajkumar, V. B.; Chen, Sinn-wen

2017-04-01

Ag-Ni is a simple and important system with immiscible liquids and (Ag,Ni) phases. Previously, this system has been thermodynamically modeled utilizing certain thermochemical and phase equilibria information based on conjecture. An attempt is made in this study to determine the missing information which are difficult to measure experimentally. The boundaries of the liquid miscibility gap at high temperatures are determined using a pyrometer. The temperature of the liquid ⇌ (Ag) + (Ni) eutectic reaction is measured using differential thermal analysis. Tie-lines of the Ag-Ni system at 1023 K and 1473 K are measured using a conventional metallurgical method. The enthalpy of mixing of the liquid at 1773 K and the (Ag,Ni) at 973 K is calculated by molecular dynamics simulation using a large-scale atomic/molecular massively parallel simulator. These results along with literature information are used to model the Gibbs energy of the liquid and (Ag,Ni) by a calculation of phase diagrams approach, and the Ag-Ni phase diagram is then calculated.

The calibration of a model for simulating the thermal and electrical performance of a 2.8 kW AC solid-oxide fuel cell micro-cogeneration device

NASA Astrophysics Data System (ADS)

Beausoleil-Morrison, Ian; Lombardi, Kathleen

The concurrent production of heat and electricity within residential buildings using solid-oxide fuel cell (SOFC) micro-cogeneration devices has the potential to reduce primary energy consumption, greenhouse gas emissions, and air pollutants. A realistic assessment of this emerging technology requires the accurate simulation of the thermal and electrical production of SOFC micro-cogeneration devices concurrent with the simulation of the building, its occupants, and coupled plant components. The calibration of such a model using empirical data gathered from experiments conducted with a 2.8 kW AC SOFC micro-cogeneration device is demonstrated. The experimental configuration, types of instrumentation employed, and the operating scenarios examined are treated. The propagation of measurement uncertainty into the derived quantities that are necessary for model calibration are demonstrated by focusing upon the SOFC micro-cogeneration system's gas-to-water heat exchanger. The calibration coefficients necessary to accurately simulate the thermal and electrical performance of this prototype device are presented and the types of analyses enabled to study the potential of the technology are demonstrated.

Highly sensitive sandwich immunoassay and immunochromatographic test for the detection of Clostridial epsilon toxin in complex matrices.

PubMed

Féraudet-Tarisse, Cécile; Mazuet, Christelle; Pauillac, Serge; Krüger, Maren; Lacroux, Caroline; Popoff, Michel R; Dorner, Brigitte G; Andréoletti, Olivier; Plaisance, Marc; Volland, Hervé; Simon, Stéphanie

2017-01-01

Epsilon toxin is one of the four major toxins of Clostridium perfringens. It is the third most potent clostridial toxin after botulinum and tetanus toxins and is thus considered as a potential biological weapon classified as category B by the Centers for Disease Control and Prevention (CDC). In the case of a bioterrorist attack, there will be a need for a rapid, sensitive and specific detection method to monitor food and water contamination by this toxin, and for a simple human diagnostic test. We have produced and characterized five monoclonal antibodies against common epitopes of epsilon toxin and prototoxin. Three of them neutralize the cytotoxic effects of epsilon toxin in vitro. With these antibodies, we have developed highly sensitive tests, overnight and 4-h sandwich enzyme immunoassays and an immunochromatographic test performed in 20 min, reaching detection limits of at least 5 pg/mL (0.15 pM), 30 pg/mL (0.9 pM) and 100 pg/mL (3.5 pM) in buffer, respectively. These tests were also evaluated for detection of epsilon toxin in different matrices: milk and tap water for biological threat detection, serum, stool and intestinal content for human or veterinary diagnostic purposes. Detection limits in these complex matrices were at least 5-fold better than those described in the literature (around 1 to 5 ng/mL), reaching 10 to 300 pg/mL using the enzyme immunoassay and 100 to 2000 pg/mL using the immunochromatographic test.

Highly sensitive sandwich immunoassay and immunochromatographic test for the detection of Clostridial epsilon toxin in complex matrices

PubMed Central

Mazuet, Christelle; Pauillac, Serge; Krüger, Maren; Lacroux, Caroline; Popoff, Michel R.; Dorner, Brigitte G.; Andréoletti, Olivier; Plaisance, Marc; Volland, Hervé; Simon, Stéphanie

2017-01-01

Epsilon toxin is one of the four major toxins of Clostridium perfringens. It is the third most potent clostridial toxin after botulinum and tetanus toxins and is thus considered as a potential biological weapon classified as category B by the Centers for Disease Control and Prevention (CDC). In the case of a bioterrorist attack, there will be a need for a rapid, sensitive and specific detection method to monitor food and water contamination by this toxin, and for a simple human diagnostic test. We have produced and characterized five monoclonal antibodies against common epitopes of epsilon toxin and prototoxin. Three of them neutralize the cytotoxic effects of epsilon toxin in vitro. With these antibodies, we have developed highly sensitive tests, overnight and 4-h sandwich enzyme immunoassays and an immunochromatographic test performed in 20 min, reaching detection limits of at least 5 pg/mL (0.15 pM), 30 pg/mL (0.9 pM) and 100 pg/mL (3.5 pM) in buffer, respectively. These tests were also evaluated for detection of epsilon toxin in different matrices: milk and tap water for biological threat detection, serum, stool and intestinal content for human or veterinary diagnostic purposes. Detection limits in these complex matrices were at least 5-fold better than those described in the literature (around 1 to 5 ng/mL), reaching 10 to 300 pg/mL using the enzyme immunoassay and 100 to 2000 pg/mL using the immunochromatographic test. PMID:28700661

Parameter estimation for mathematical models of a nongastric H+(Na+)-K(+)(NH4+)-ATPase.

PubMed

Nadal-Quirós, Mónica; Moore, Leon C; Marcano, Mariano

2015-09-01

The role of nongastric H(+)-K(+)-ATPase (HKA) in ion homeostasis of macula densa (MD) cells is an open question. To begin to explore this issue, we developed two mathematical models that describe ion fluxes through a nongastric HKA. One model assumes a 1H(+):1K(+)-per-ATP stoichiometry; the other assumes a 2H(+):2K(+)-per-ATP stoichiometry. Both models include Na+ and NH4+ competitive binding with H+ and K+, respectively, a characteristic observed in vitro and in situ. Model rate constants were obtained by minimizing the distance between model and experimental outcomes. Both 1H(+)(1Na(+)):1K(+)(1NH4 (+))-per-ATP and 2H(+)(2Na(+)):2K(+)(2NH4 (+))-per-ATP models fit the experimental data well. Using both models, we simulated ion net fluxes as a function of cytosolic or luminal ion concentrations typical for the cortical thick ascending limb and MD region. We observed that (1) K+ and NH4+ flowed in the lumen-to-cytosol direction, (2) there was competitive behavior between luminal K+ and NH4+ and between cytosolic Na+ and H+, 3) ion fluxes were highly sensitive to changes in cytosolic Na+ or H+ concentrations, and 4) the transporter does mostly Na+ / K+ exchange under physiological conditions. These results support the concept that nongastric HKA may contribute to Na+ and pH homeostasis in MD cells. Furthermore, in both models, H+ flux reversed at a luminal pH that was <5.6. Such reversal led to Na+ / H+ exchange for a luminal pH of <2 and 4 in the 1:1-per-ATP and 2:2-per-ATP models, respectively. This suggests a novel role of nongastric HKA in cell Na+ homeostasis in the more acidic regions of the renal tubules. Copyright © 2015 the American Physiological Society.

Parameter estimation for mathematical models of a nongastric H+(Na+)-K+(NH4+)-ATPase

PubMed Central

Nadal-Quirós, Mónica; Moore, Leon C.

2015-01-01

The role of nongastric H+-K+-ATPase (HKA) in ion homeostasis of macula densa (MD) cells is an open question. To begin to explore this issue, we developed two mathematical models that describe ion fluxes through a nongastric HKA. One model assumes a 1H+:1K+-per-ATP stoichiometry; the other assumes a 2H+:2K+-per-ATP stoichiometry. Both models include Na+ and NH4+ competitive binding with H+ and K+, respectively, a characteristic observed in vitro and in situ. Model rate constants were obtained by minimizing the distance between model and experimental outcomes. Both 1H+(1Na+):1K+(1NH4+)-per-ATP and 2H+(2Na+):2K+(2NH4+)-per-ATP models fit the experimental data well. Using both models, we simulated ion net fluxes as a function of cytosolic or luminal ion concentrations typical for the cortical thick ascending limb and MD region. We observed that 1) K+ and NH4+ flowed in the lumen-to-cytosol direction, 2) there was competitive behavior between luminal K+ and NH4+ and between cytosolic Na+ and H+, 3) ion fluxes were highly sensitive to changes in cytosolic Na+ or H+ concentrations, and 4) the transporter does mostly Na+/K+ exchange under physiological conditions. These results support the concept that nongastric HKA may contribute to Na+ and pH homeostasis in MD cells. Furthermore, in both models, H+ flux reversed at a luminal pH that was <5.6. Such reversal led to Na+/H+ exchange for a luminal pH of <2 and 4 in the 1:1-per-ATP and 2:2-per-ATP models, respectively. This suggests a novel role of nongastric HKA in cell Na+ homeostasis in the more acidic regions of the renal tubules. PMID:26109090

Computational fluid dynamics modeling of laboratory flames and an industrial flare.

PubMed

Singh, Kanwar Devesh; Gangadharan, Preeti; Chen, Daniel H; Lou, Helen H; Li, Xianchang; Richmond, Peyton

2014-11-01

A computational fluid dynamics (CFD) methodology for simulating the combustion process has been validated with experimental results. Three different types of experimental setups were used to validate the CFD model. These setups include an industrial-scale flare setups and two lab-scale flames. The CFD study also involved three different fuels: C3H6/CH/Air/N2, C2H4/O2/Ar and CH4/Air. In the first setup, flare efficiency data from the Texas Commission on Environmental Quality (TCEQ) 2010 field tests were used to validate the CFD model. In the second setup, a McKenna burner with flat flames was simulated. Temperature and mass fractions of important species were compared with the experimental data. Finally, results of an experimental study done at Sandia National Laboratories to generate a lifted jet flame were used for the purpose of validation. The reduced 50 species mechanism, LU 1.1, the realizable k-epsilon turbulence model, and the EDC turbulence-chemistry interaction model were usedfor this work. Flare efficiency, axial profiles of temperature, and mass fractions of various intermediate species obtained in the simulation were compared with experimental data and a good agreement between the profiles was clearly observed. In particular the simulation match with the TCEQ 2010 flare tests has been significantly improved (within 5% of the data) compared to the results reported by Singh et al. in 2012. Validation of the speciated flat flame data supports the view that flares can be a primary source offormaldehyde emission.

IgE enhances Fc epsilon RI expression and IgE-dependent TNF-alpha release from canine skin mast cells.

PubMed

Brazís, P; De Mora, F; Ferrer, L; Puigdemont, A

2002-03-01

The role of IgE on mast cell (MC) activation is well known. Recent studies have demonstrated that IgE also has the ability to up-regulate the high affinity IgE receptor (Fc epsilon RI) on the surface of human and murine MC, leading to an increased production of cytokines and chemokines. In the present study, we have examined the influence of IgE levels on Fc epsilon RI expression, and its consequences on TNF-alpha production from canine skin MC. Mature MC were enzymatically dispersed from the skin biopsies of 6-8 dogs and were cultured for up to 5 days in medium supplemented with recombinant canine stem cell factor (SCF) (6 ng/ml), in the presence of increasing serum IgE concentrations (ranging from 0 to 80 microg/ml). Subsequently, skin MC were activated with anti-IgE, and TNF-alpha concentration was assessed 5h post-activation by a cytotoxic bioassay. Fc epsilon RI receptors were identified in MC surface by flow cytometry. MC cultured for up to 5 days in the presence of high serum IgE concentration (8 microg/ml) produced twice the quantity of TNF-alpha than MC cultured in the absence of serum IgE, in response to stimulation with anti-IgE. Moreover, the percentage of Fc epsilon RI-positive skin cells was found to be approximately double in cells cultured with serum IgE compared to that cultured in the absence of IgE, following saturation of IgE receptors. These results suggest that, as found in human and murine MC, IgE may induce an up-regulation of the Fc epsilon RI density and an enhancement in the secretory activity of canine skin MC. This study could be of great interest in designing new therapeutic strategies for controlling MC activation in inflammatory and allergic processes.

Direct numerical simulations and modeling of a spatially-evolving turbulent wake

NASA Technical Reports Server (NTRS)

Cimbala, John M.

1994-01-01

Understanding of turbulent free shear flows (wakes, jets, and mixing layers) is important, not only for scientific interest, but also because of their appearance in numerous practical applications. Turbulent wakes, in particular, have recently received increased attention by researchers at NASA Langley. The turbulent wake generated by a two-dimensional airfoil has been selected as the test-case for detailed high-resolution particle image velocimetry (PIV) experiments. This same wake has also been chosen to enhance NASA's turbulence modeling efforts. Over the past year, the author has completed several wake computations, while visiting NASA through the 1993 and 1994 ASEE summer programs, and also while on sabbatical leave during the 1993-94 academic year. These calculations have included two-equation (K-omega and K-epsilon) models, algebraic stress models (ASM), full Reynolds stress closure models, and direct numerical simulations (DNS). Recently, there has been mutually beneficial collaboration of the experimental and computational efforts. In fact, these projects have been chosen for joint presentation at the NASA Turbulence Peer Review, scheduled for September 1994. DNS calculations are presently underway for a turbulent wake at Re(sub theta) = 1000 and at a Mach number of 0.20. (Theta is the momentum thickness, which remains constant in the wake of a two dimensional body.) These calculations utilize a compressible DNS code written by M. M. Rai of NASA Ames, and modified for the wake by J. Cimbala. The code employs fifth-order accurate upwind-biased finite differencing for the convective terms, fourth-order accurate central differencing for the viscous terms, and an iterative-implicit time-integration scheme. The computational domain for these calculations starts at x/theta = 10, and extends to x/theta = 610. Fully developed turbulent wake profiles, obtained from experimental data from several wake generators, are supplied at the computational inlet, along with

A critical evaluation of two-equation models for near wall turbulence

NASA Technical Reports Server (NTRS)

Speziale, Charles G.; Anderson, E. Clay; Abid, Ridha

1990-01-01

A basic theoretical and computational study of two-equation models for near-wall turbulent flows was conducted. Two major problems established for the K-epsilon model are discussed, the lack of natural boundary conditions for the dissipation rate and the appearance of higher-order correlations in the balance of terms for the dissipation rate at the wall. The K-omega equation is shown to have two problems also: an exact viscous term is missing, and the destruction of the dissipation term is not properly damped near the wall. A new K-tau model (where tau = 1/omega is the turbulent time scale) was developed by inclusion of the exact viscous term, and by introduction of new wall damping functions with improved asymptotic behavior. A preliminary test of the new model yields improved predictions for the flat-plate turbulent boundary layer.