Sample records for k-t boundary signatures

  1. Deccan volcanism and K-T boundary signatures

    NASA Technical Reports Server (NTRS)

    Murali, A. V.; Schuraytz, B. C.; Parekh, P. P.

    1988-01-01

    The Deccan Traps in the Indian subcontinent represent one of the most extensive flood basalt provinces in the world. These basalts occur mainly as flat-lying, subaerially erupted tholeiitic lava flows, some of which are traceable for distances of more than 100 km. Offshore drilling and geophysical surveys indicate that a part of the Deccan subsided or was downfaulted to the west beneath the Arabian Sea. The presence of 1 to 5 m thick intertrappean sediments deposited by lakes and rivers indicates periods of quiescence between eruptions. The occurrence of numerous red bole beds among the flows suggests intense weathering of flow tops between eruptive intervals. Although the causative relationship of the Cretaceous-Tertiary (K-T) biotic extinctions to Deccan volcanism is debatable, the fact that the main Deccan eruptions straddle the K-T event appears beyond doubt from the recent Ar-40/Ar-39 ages of various Deccan flows. This temporal relationship of the K-T event with Deccan volcanism makes the petrochemical signatures of the entire Deccan sequence (basalt flows, intercalated intertrappean sediments, infratrappean Lameta beds (with dinosaur fossils), and the bole beds) pertinent to studies of the K-T event. The results of ongoing study is presented.

  2. Impact and extinction signatures in complete Cretaceous-Tertiary (K-T) boundary sections

    NASA Technical Reports Server (NTRS)

    Smit, J.; Groot, H.; Dejonge, R.; Smit, P.

    1988-01-01

    The Zumaya, Caravaca and Agost sections in Spain, the El Kef section in Tunisia and the Negev (Nahal Avdat) sections in Israel are among the most continuous, expanded and complete K-T boundary sections. The distribution patterns of the planktic faunas were quantitatively analyzed in closely spaced samples across the K-T boundary in these sections, in conjuction with the geochemistry, stable isotopes, mineralogy and magnetostratigraphy. Three hundred foraminiferal specimens were randomly selected and determined. Reliable estimates for the foraminiferal productivity changes across the K-T boundary and for the 1 to 2 Ma interval preceding the K-T boundary were made from the numbers of individuals/gram of sediment corrected for the sedimentation rates (calculated from magnetic reversals and lithology). No gradual or stepwise extinction is seen below the K-T boundary nor any productivity decrease. Stable isotope analyses show a warming just after deposition of the ejecta layer, not cooling as predicted by nuclear winter scenarios, although the duration of such cooling may be too short to be observed even in these complete sections. Low REE values and cpx spherules with quench textures idential to quench-textures in diagenetically altered spherules, strongly indicate an oceanic site of (one of) the impactor(s).

  3. Shocked quartz and more: Impact signatures in K-T boundary clays and claystones

    NASA Technical Reports Server (NTRS)

    Bohor, Bruce F.

    1988-01-01

    Quartz grains displaying multiple sets of planar features are described from numerous Cretaceous-Tertiary (K-T) boundary clays and claystones at both marine and nonmarine depositional sites around the world. All these sites also show anomalously high amounts of iridium and enrichments of other siderophile elements in cosmic ratios within these boundary units. This combination of mineralogical and geochemical features are used in support of an impact hypothesis for the end-Cretaceous event. Recently, it was suggested that some combination of explosive and nonexplosive volcanism associated with the formation of the Deccan traps in India could be responsible for the mineralogy and geochemistry seen in the K-T boundary units. Besides the obvious contradition of simultaneous explosive and nonexplosive volcanism from one locality during an instant of geologic time, there remains the difficulty of spreading both iridium (and trace elements in cosmic proportions) and quartz grains around the world by volcanic (atmospheric) transport. In addition, the ability of volcanism to produce the type of shock metamorphism seen in minerals at the K-T boundary was not demonstrated. Multiple sets of shock lamellae in quartz are considered characteristic of shock metamorphism in rocks at the sites of known impact craters and are the type of deformation seen in quartz from K-T boundary clays and claystones. Single sets of poorly defined lamellae described from rare quartz grains in certain volcanic deposits are characteristic of tectonic deformation and do not correspond to the shock lamellae in quartz from K-T sediments and impact structures. So-called shock mosaicism in quartz and feldspar grains described from volcanic deposits can result from many processes other than shock metamorphism, and therefore is not considered to be an effect characteristic solely of shock. The mineralogy of shock-metamorphosed grains at the K-T boundary also argues against a volcanic origin.

  4. Detritus in K/T boundary clays of western North America - Evidence against a single oceanic impact

    NASA Technical Reports Server (NTRS)

    Sharpton, V. L.; Schuraytz, B. C.; Burke, K.; Murali, A. V.; Ryder, G.

    1990-01-01

    Understanding the crustal signature of impact ejecta contained in the Cretaceous/Tertiary (K/T) boundary layer is crucial to constraining the possible site(s) of the postulated K/T impact event. The relatively unaltered clastic constituents of the boundary layer at widely separated outcrops within the western interior of North America are not compatible with a single oceanic impact but require instead an impact site on a continent or continental margin. On the other hand, chemical compositions of highly altered K/T boundary layer components in some marine sections have suggested to others an impact into oceanic crust. We suspect that post-depositional alteration within the marine setting accounts for this apparent oceanic affinity. If, however, this is not the case, multiple simultaneous impacts, striking continent as well as ocean floor, would seem to be required.

  5. Nature of the impactor at the K/T boundary: clues from Os, W and Cr isotopes.

    NASA Astrophysics Data System (ADS)

    Quitté, G.; Robin, E.; Capmas, F.; Levasseur, S.; Rocchia, R.; Birck, J. L.; Allègre, C. J.

    2003-04-01

    We measured the isotope composition of Os, W and Cr in K/T boundary sediments of three marine sites (Stevns Klint, Caravaca and Bidart) to determine the nature of the bolid that impacted the Earth 65 Myrs ago. We also analysed Ni-rich cosmic spinels, because they are thought to keep the signature of the impactor. The low REE content in spinels precludes indeed the hypothesis of a mixing with more than 10% of terrestrial material. The Os and W enrichment at the K/T boundary could be explained by a scavenging of chalcophile elements at the time of sulfide precipitation. The 187Os/186Os ratio of the K/T sediments is higher than the ratio of any kind of meteorites. On top of a possible mixing with surrounding sediments, we suggest that the boundary contained more Re in the past (lost since that time by alteration and oxidation) and that the Os isotope ratio is in fact disturbed. On each of the three sites, the boundary itself does not present any tungsten isotopic anomaly. The most likely interpretation is that the extraterrestrial material is diluted enough into the sediments so that the isotopic signature has been erased. Spinels show a small deficit of (0.34±0.9) ɛ in 182W. The large error bar precludes any clear conclusion whether or not a meteoritic signature is really present. If the spinels really carry an extraterrestrial signature as expected, their W composition is in favour of an ordinary chondrite. All K/T samples (sediments and spinels) are apparently depleted in 53Cr by about 0.5 ɛ (after renormalization of 54Cr to the terrestrial value) whereas ordinary chondrites display an excess of about 0.5 ɛ. Among meteorites, only carbonaceous chondrites present a negative value for the 53Cr/52Cr ratio relative to the terrestrial value. As more than 90% of the Cr present in spinels is of extraterrestrial origin, the Cr isotopes unambiguously show that the K/T impactor was a carbonaceous chondrite. These isotopic results also confirm the extraterrestrial origin

  6. Osmium, tungsten, and chromium isotopes in sediments and in Ni-rich spinel at the K-T boundary: Signature of a chondritic impactor

    NASA Astrophysics Data System (ADS)

    Quitté, Ghylaine; Robin, Eric; Levasseur, Sylvain; Capmas, Françoise; Rocchia, Robert; Birck, Jean-Louis; Allègre, Claude Jean

    It is now established that a large extraterrestrial object hit the Earth at the end of the Cretaceous period, about 65 Ma ago. We have investigated Re-Os, Hf-W, and Mn-Cr isotope systems in sediments from the Cretaceous and the Paleogene in order to characterize the type of impactor. Within the Cretaceous-Tertiary (K-T) boundary layer, extraterrestrial material is mixed with terrestrial material, causing a dilution of the extraterrestrial isotope signature that is difficult to quantify. A phase essentially composed of Ni-rich spinel, formed in the atmosphere mainly from melted projectile material, is likely to contain the extraterrestrial isotopic signature of the impactor. We show that the analysis of spinel is indeed the best approach to determine the initial isotope composition of the impactor, and that W and Cr isotopes confirm that the projectile was a carbonaceous chondrite.

  7. Mineralogical and geochemical anomalous data of the K-T boundary samples

    NASA Technical Reports Server (NTRS)

    Miura, Y.; Shibya, G.; Imai, M.; Takaoka, N.; Saito, S.

    1988-01-01

    Cretaceous-Tertiary boundary problem has been discussed previously from the geological research, mainly by fossil changes. Although geochemical bulk data of Ir anomaly suggest the extraterrestrial origin of the K-T boundary, the exact formation process discussed mainly by mineralogical and geochemical study has been started recently, together with noble gas contents. The K-T boundary sample at Kawaruppu River, Hokkaido was collected, in order to compare with the typical K-T boundary samples of Bubbio, Italy, Stevns Klint, Denmark, and El Kef, Tunisia. The experimental data of the silicas and calcites in these K-T boundary samples were obtained from the X-ray unit-cell dimension (i.e., density), ESR signal and total linear absorption coefficient, as well as He and Ne contents. The K-T boundary samples are usually complex mixture of the terrestrial activities after the K-T boundary event. The mineralogical and geochemical anomalous data indicate special terrestrial atmosphere at the K-T boundary formation probably induced by asteroid impact, followed the many various terrestrial activities (especially the strong role of sea-water mixture, compared with terrestrial highland impact and impact craters in the other earth-type planetary bodies).

  8. The Western North American Cretaceous-Tertiary (K-T) boundary interval and its content of shock-metamorphosed minerals: Implications concerning the K-T boundary impact-extinction theory

    NASA Technical Reports Server (NTRS)

    Izett, G. A.

    1988-01-01

    At 20 sites in the Raton Basin of Colorado and New Mexico, and at several other sites in Wyoming, Montana, and Canada, a pair of claystone units, an Ir abundance anomaly, and a concentration of shock-metamorphosed minerals mark the palynological K-T boundary. The K-T boundary claystone, which is composed of kaolinite and small amounts of illite/smectite mixed-layer clay, is similar in most respects to kaolinite tonstein layers in coal beds. At some, but not all, K-T boundary localities, the boundary claystone contains solid kaolinite and hollow and solid goyazite spherules, 0.05 to 1.2 mm in diameter. The upper unit, the K-T boundary impact layer, consists chiefly of kaolinite and various amounts of illite/smectite mixed-layer clay. The impact layer and boundary claystone are similar chemically, except that the former has slightly more Fe, K, Ba, Cr, Cu, Li, V, and Zn than the latter. The facts that the boundary claystone and impact layer contain anomalous amounts of Ir, comprise a stratigraphic couplet at Western North American sites, and form thin, discrete layers, similar to air-fall units (volcanic or impact), suggest that the claystone units are of impact origin. Significantly, the impact layer contains as much as 2 percent clastic mineral grains, about 30 percent of which contain multiple sets of shock lamellae. Only one such concentration of shocked minerals has been found near the K-T boundary. The type of K-T boundary shock-metamorphosed materials (quartzite and metaquartzite) in the impact layer and the lack of shock lamellae in quartz and feldspar of pumice lapilli and granitic xenoliths in air-fall pumice units of silicic tuffs, such as the Bishop Tuff, eliminate the possibility that the shock-metamorphosed minerals in the K-T impact layer are of volcanic origin. The global size distribution and abundance of shock-metamorphosed mineral grains suggest that the K-T impact occurred in North America.

  9. Geochemical evidence for combustion of hydrocarbons during the K-T impact event

    PubMed Central

    Belcher, Claire M.; Finch, Paul; Collinson, Margaret E.; Scott, Andrew C.; Grassineau, Nathalie V.

    2009-01-01

    It has been proposed that extensive wildfires occurred after the Cretaceous–Tertiary (K-T) impact event. An abundance of soot and pyrosynthetic polycyclic aromatic hydrocarbons (pPAHs) in marine K-T boundary impact rocks (BIRs) have been considered support for this hypothesis. However, nonmarine K-T BIRs, from across North America, contain only rare occurrences of charcoal yet abundant noncharred plant remains. pPAHs and soot can be formed from a variety of sources, including partial combustion of vegetation and hydrocarbons whereby modern pPAH signatures are traceable to their source. We present results from multiple nonmarine K-T boundary sites from North America and reveal that the K-T BIRs have a pPAH signature consistent with the combustion of hydrocarbons and not living plant biomass, providing further evidence against K-T wildfires and compelling evidence that a significant volume of hydrocarbons was combusted during the K-T impact event. PMID:19251660

  10. The Disposition of Pt, Pd, Ir, Os, and Ru in Marine Sediments and the K/T Boundary

    NASA Technical Reports Server (NTRS)

    Lee, Cin-Ty; Wasserburg, Gerald; Kyte, Frank

    2003-01-01

    The marine record of platinum group elements (PGEs) and Os isotopic compositions provides information on different inputs of PGEs into the oceans. Some studies based on a smaller subset of the PGEs suggest that the PGEs may suffer post-depositional mobility during diagenesis. In some K/T boundary clays, Kyte and others showed that the relative abundances of Pt, Pd, Ir, and Os can differ significantly from chondritic, which is the signature expected from fallout of the meteorite impact. In some K/T boundary sections, elevated Ir concentrations are observed as far as 1 meter from the cm-thick boundary clay containing the meteoritic ejecta. The purpose of this study was to characterize Pt, Pd, Ir, Os, and Ru abundances in zones including the K/T boundary. We determined PGE abundances of boundary clays at two hemipelagic sites (Stevns Klint, Denmark and Caravaca, Spain) in which previous studies by Kyte and others showed that the Ir anomaly is confined to within a few cm. We also analyzed two pelagic Pacific sites: a boundary clay from the north Pacific (Hole 465A) characterized by a 0.5 m thick Ir anomaly and a transect across the K/T boundary from the south Pacific (Hole 596) where the Ir anomaly spans 2 m. The Stevns Klint, Caravaca, and north Pacific sites are characterized by abundant marls and limestones in the section, whereas the south Pacific site is dominated by clays. Samples were spiked with isotopic tracers, mixed with a flux, S and Ni, and equilibrated by fusion. PGEs were extracted from the Ni and analyzed on a Finnigan Element ICP-MS. We find that the narrow Caravaca and Stevns Klint boundary clays have relative PGE abundance patterns indistinguishable from chondritic values. The two Pacific sites were found to have nearly identical PGE patterns but have ratios at the peak, which differ from chondritic values as found earlier by Evans et al. The Pacific sites were found to have nearly identical PGE patterns but are extremely depleted in OS (Os/Ir = 0

  11. Stratigraphy and sedimentology of the K/T boundary deposit in Haiti

    NASA Technical Reports Server (NTRS)

    Carey, S.; Sigurdsson, H.; Dhondt, S.; Espindola, J. M.

    1993-01-01

    The K/T boundary sequence is exposed in uplifted carbonate sediments of the southwest peninsula of Haiti. It is found at 15 localities within the Beloc formation, a sequence of limestone and marls interpreted as a monoclinal nappe structure thrust to the north. This tectonic deformation has affected the K/T boundary deposit to varying degrees. In some cases the less competent K/T deposit has acted as a slip plane leading to extensive shearing of the boundary layer, as well as duplication of the section. The presence of glassy tektites, shocked quartz, and an Ir anomaly directly link the deposit to a bolide impact. Stratigraphic and sedimentological features of the tripartite sequence indicate that it was formed by deposition from ballistic fallout of coarse tektites, emplacement of particle gravity flows and fine grained fallout of widely dispersed impact ejecta.

  12. Extended period of K/T boundary mass extinction in the marine realm

    NASA Technical Reports Server (NTRS)

    Keller, G.

    1988-01-01

    The Cretaceous/Tertiary (K/T) boundary mass extinction has been widely recognized as a nearly instantaneous catastrophy among marine plankton such as foraminifera. However, the suddenness of this extinction event may have been overemphasized because most pelagic K/T boundary sequences are stratigraphically incomplete and generally lack the earliest Tertiary (Zones P0 and P1a) either due to carbonate dissolution and/or non-deposition. Stratigraphically complete sections appear to be restricted to continental shelf regions with high sedimentation rates and deposition well above the CCD. Such sections have been recovered from El Kef, Tunisia (1) and Brazos River, Texas. Quantitative foraminiferal analysis of these sections indicate an extinction pattern beginning below the K/T boundary and ending above the boundary. These data imply that the mass extinction event was not geologically instantaneous, but occurred over an extended period of time. Evidence supporting this conclusion is discussed.

  13. Carbon isotopic compositions of organic matter across continental Cretaceous-Tertiary (K-T) boundary sections: Implications for paleoenvironment after the K-T impact event

    USGS Publications Warehouse

    Maruoka, T.; Koeberl, C.; Bohor, B.F.

    2007-01-01

    To assess the environmental perturbation induced by the impact event that marks the Cretaceous-Tertiary (K-T) boundary, concentrations and isotopic compositions of bulk organic carbon were determined in sedimentary rocks that span the terrestrial K-T boundary at Dogie Creek, Montana, and Brownie Butte, Wyoming in the Western Interior of the United States. The boundary clays at both sites are not bounded by coals. Although coals consist mainly of organic matter derived from plant tissue, siliceous sedimentary rocks, such as shale and clay, may contain organic matter derived from microbiota as well as plants. Coals record ??13C values of plant-derived organic matter, reflecting the ??13C value of atmospheric CO2, whereas siliceous sedimentary rocks record the ??13C values of organic matter derived from plants and microbiota. The microbiota ??13C value reflects not only the ??13C value of atmospheric CO2, but also biological productivity. Therefore, the siliceous rocks from these sites yields information that differs from that obtained previously from coal beds. Across the freshwater K-T boundary at Brownie Butte, the ??13C values decrease by 2.6??? (from - 26.15??? below the boundary clay to - 28.78??? above the boundary clay), similar to the trend in carbonate at marine K-T sites. This means that the organic ??13C values reflect the variation of ??13C of atmospheric CO2, which is in equilibrium with carbon isotopes at the ocean surface. Although a decrease in ??13C values is observed across the K-T boundary at Dogie Creek (from - 25.32??? below the boundary clay to - 26.11??? above the boundary clay), the degree of ??13C-decrease at Dogie Creek is smaller than that at Brownie Butte and that for marine carbonate. About 2??? decrease in ??13C of atmospheric CO2 was expected from the ??13C variation of marine carbonate at the K-T boundary. This ??13C-decrease of atmospheric CO2 should affect the ??13C values of organic matter derived from plant tissue. As such a

  14. Faunal and erosional events in the Eastern Tethyan Sea across the K/T boundary

    NASA Technical Reports Server (NTRS)

    Keller, G.; Benjamini, C.

    1988-01-01

    A regional pattern of three closely spaced erosional events at and above the K/T boundary was determined from six Cretaceous/Tertiary boundary sections in the Negev of Israel. The sections were collected from locations throughout the central and northern Negev. All sections are lithologically similar. The Maastrichtian consists of a sequence of limestone beds intercalated with thin marly beds. In some sections, the last limestone bed is followed by 1 to 2 m of calcareous marls grading upwards into several meters of grey shale. In other sections the limestone bed is followed directly by grey shale with the contact containing particles of limestone and marl. A 5 to 20 cm thick dark grey organic-rich clay layer is present about 1.5 to 2.5 m above the base of the grey shale. The grey shale grades upwards into increasingly carbonate rich marls. No unconformities are apparent in field outcrops. During field collection the dark grey clay layer was believed to represent the K/T boundary clay. Microfossil analysis however identified the boundary at the base of the grey shale. The black shale represents a low productivity anoxic event similar to, but younger than, the K/T boundary clay in other K/T boundary sections. High resolution planktic foraminiferal and carbonate analysis of these sections (at 5 to 10 cm intervals) yield surprising results. The K/T boundary is marked by an erosional event which removed part or all of the uppermost Maastrichtian marls above the last limestone bed. Percent carbonate data for four Negev sections are illustrated and show the regional similarities in carbonate sedimentation. Faunal and carbonate data from the Negev sections thus show three closely spaced short erosional events at the K/T boundary and within the first 50,000 to 100,000 years of the Danian. These K/T boundary erosional events may represent global climatic or paleoceanographic events.

  15. Bio-, Magneto- and event-stratigraphy across the K-T boundary

    NASA Technical Reports Server (NTRS)

    Preisinger, A.; Stradner, H.; Mauritsch, H. J.

    1988-01-01

    Determining the time and the time structure of rare events in geology can be accomplished by applying three different and independent stratigraphic methods: Biostratigraphy, magneto-stratigraphy and event-stratigraphy. The optimal time resolution of the two former methods is about 1000 years, while by means of event-stratigraphy a resolution of approximately one year can be achieved. For biostratigraphy across the Cretaceous-Tertiary (K-T) boundary micro- and nannofossils have been found best suited. The qualitative and quantitative analyses of minerals and trace elements across the K-T boundary show anomalies on a millimeter scale and permit conclusions regarding the time structure of the K-T event itself. The results of the analyses find a most consistent explanation by the assumption of an extraterrestrial impact. The main portion of the material rain from the atmosphere evidently was deposited within a short time. The long-time components consist of the finest portion of the material rain from the atmosphere and the transported and redeposited fall-out.

  16. Marine and continental K-T boundary clays compared

    NASA Technical Reports Server (NTRS)

    Schmitz, B.

    1988-01-01

    Detailed geochemical and mineralogical studies (1 to 5) of sediments across the Cretaceous-Tertiary (K-T) boundary at Stevns Klint, Karlstrup, Nye Klov, Dania, and Kjolby Gaard in Denmark, at Limhamn in Sweden, at Caravaca in Spain, at Waipara and Woodside Creek in New Zealand, at Trinidad in Colorado, and at various sites in Montana, have induced conclusions and reflections which are given and briefly discussed.

  17. Geochemical comparison of K-T boundaries from the Northern and Southern Hemispheres

    NASA Technical Reports Server (NTRS)

    Tredous, M.; Verhagen, B. TH.; Hart, R. J.; Dewit, C. B.; Smith, C. B.; Perch-Nielsen, K.; Sellschop, J. P. F.

    1988-01-01

    Closely spaced (cm-scale) traverses through the K-T boundary at Stevns Klint (Denmark), Woodside Creek (New Zealand) and a new Southern Hemisphere site at Richards Bay (South Africa) were subjected to trace element and isotopic (C, O, Sr) investigation. Intercomparison between these data-sets, and correlation with the broad K-T database available in the literature, indicate that the chemistry of the boundary clays is not globally constant. Variations are more common than similarities, both of absolute concentrations, and interelement ratios. For example, the chondrite normalized platinum-group elements (PGE) patterns of Stevns Klint are not like those of Woodside Creek, with the Pt/Os ratios showing the biggest variation. These differences in PGE patterns are difficult to explain by secondary alteration of a layer that was originally chemically homogeneous, especially for elements of such dubious crustal mobility as Os and Ir. The data also show that enhanced PGE concentrations, with similar trends to those of the boundary layers, occur in the Cretaceous sediments below the actual boundary at Stevns Klint and all three the New Zealand localities. This confirms the observations of others that the geochemistry of the boundary layers apparently does not record a unique component. It is suggested that terrestrial processes, eg. an extended period of Late Cretaceous volcanism can offer a satisfactory explanation for the features of the K-T geochemical anomaly. Such models would probably be more consistent with the observed stepwise, or gradual, palaeontological changes across this boundary, than the instant catastrophe predicated by the impact theory.

  18. Fires at the K/T boundary - Carbon at the Sumbar, Turkmenia, site

    NASA Technical Reports Server (NTRS)

    Wolbach, Wendy S.; Anders, Edward; Nazarov, Michael A.

    1990-01-01

    Results are reported on carbon analysis and on C and Ir correlations in samples from the marine K-T boundary site SM-4 at the Sumbar River in Turkmenia (USSR), which has the largest known Ir anomaly (580 ng/cq cm). In addition, the boundary clay is thick, and is undisturbed by bioturbation. Kerogen and delta-C-13 elemental carbon in the boundary clay were resolved using a Cr2O7(2-) oxidation method of Wolbach and Anders (1989). It was found that Ir and shocked quartz, both representing impact ejecta, rise sharply at the boundary, peak in the basal layer, and then decline. On the other hand, soot and total elemental C show a similar spike in the basal layer but then rise rather than fall, peking at 7 cm. Results indicate that fires at the SM-4 K-T boundary site started before the basal layer had settled, implying that ignition and spreading of major fires became possible at the time of or very soon after the meteorite impact.

  19. K/T boundary stratigraphy: Evidence for multiple impacts and a possible comet stream

    NASA Technical Reports Server (NTRS)

    Shoemaker, E. M.; Izett, G. A.

    1992-01-01

    A critical set of observations bearing on the K/T boundary events were obtained from several dozen sites in western North America. Thin strata at and adjacent to the K/T boundary are locally preserved in association with coal beds at these sites. The strata were laid down in local shallow basins that were either intermittently flooded or occupied by very shallow ponds. Detailed examination of the stratigraphy at numerous sites led to the recognition of two distinct strata at the boundary. From the time that the two strata were first recognized, E.M. Shoemaker has maintained that they record two impact events. We report some of the evidence that supports this conclusion.

  20. The Cretaceous/Tertiary (K/T) boundary: 25 Years of controversial discussion

    NASA Astrophysics Data System (ADS)

    Harting, M.; Wittler, F. A.

    2006-05-01

    The K/T transition is under geoscientific focus since many years. Ever since the discovery of the Chicxulub- Impact theory in the early 1980s, its ctrater and its subsurface structure in the late 1990s many scientists and media, Hollywood, and the general public have become convinced that a large meteorite caused the K/T boundary and killed the dinosaurs and other organisms in the late Maastrichtian. However, today a much more comprehensive and detailed scientific background is present. Many scientist today believe that there is doubt that the Chicxulub impact is the "smoking gun". Moreover, there is increasing evidence that the Chicxulub impact predates the K/T mass extinction by about 300.000 years and did not cause the end of the dinosaures or of other marine and terrestrial organisms. On the other hand, some scientist still fixed to the general theory of a catastropic event. Due to recent field work on highly important sites and drillings inside the Chicxulub Impact structure itself, major new results are present today. In general, these new evidence, such as multiple ejecta layer, in locations in the Gulf of Mexico, the Caribbean, the Tethys and beyond, could not be interpreted by secondary (e.g. sedimentological-) features (slumping, reworking). Unfortunately, due to the highly emotional and controversal discussion - sometimes more like a religious than a scientific fight - many scientist feel uncomfortable to join the K/T problem. In fact, in between only a couple of major groups in various Universities are focussed - and leading - the discussion. A more open interaction between various geoscientific disciplines and researcher may the key to solve the mystery of the Chicxulub Impact and its relation to the K/T boundary.

  1. Iridium contents in the Late Cretaceous-Early Tertiary clays in relation to the K/T boundary, North Jordan

    NASA Astrophysics Data System (ADS)

    Abboud, Iyad Ahmed

    2016-06-01

    The mineralogy, lithology, and geochemistry of five discrete laminations across the K/T boundary of clayey shale at the Yarmouk River area, Jordan, were examined. There were no marked changes in the mineralogy of the clayey shale within the K/T boundary. This outcrop consists of more than 100 m of Maastrichtian oil shale overlying about 20 m limestone. Marly limestone included many clay laminations from organic and volcanic origins, which are considered an evidence of the K/T boundary through detected iridium anomalies. Any of these particular lamellae range from 2 mm to 5 mm in thickness. Smectite was the predominant clay mineral in smectitic shale laminations. It was located at eight meters above the K/T boundary and includes some anomalous concentrations of iridium and traces of other elements. The analysis of geochemical platinum group at the K/T boundary clays showed anomalous enrichments of iridium, compared with other carbonate rocks as a result of weathering processes of oil shale, or through concentration from weathering of basalt flows, but not pointing to an impact process. The clays in late Maastrichtian have Ir-Sc prevailed anomalies and synchronize with increasing of terrigenous and volcanogenic traced elements. Kaolin, smectite, and volkonskoite were the dominant clay minerals at the K/T boundary with high concentrations of iridium. The concentration levels of iridium in some laminations of the Yarmouk sediments ranged between 1.6 and 7.8 ppb.

  2. Impact wave deposits provide new constraints on the location of the K/T boundary impact

    NASA Technical Reports Server (NTRS)

    Hildebrand, A. R.; Boynton, W. V.

    1988-01-01

    All available evidence is consistent with an impact into oceanic crust terminating the Cretaceous Period. Although much of this evidence is incompatible with an endogenic origin, some investigators still feel that a volcanic origin is possible for the Cretaceous/Tertiary (K/T) boundary clay layers. The commonly cited evidence for a large impact stems from delicate clay layers and their components and the impact site has not yet been found. Impact sites have been suggested all over the globe. The impact is felt to have occurred near North America by: the occurrence of a 2 cm thick ejecta layer only at North American locales, the global variation of shocked quartz grain sizes peaking in North America, the global variation of spinel compositions with most refractory compositions occurring in samples from the Pacific region and possibly uniquely severe plant extinctions in the North American region. The K/T boundary interval was investigated as preserved on the banks of the Brazos River, Texas. The K/T fireball and ejecta layers with associated geochemical anomalies were found interbedded with this sequence which apparently allows a temporal resolution 4 orders of magnitude greater than typical K/T boundary sections. A literature search reveals that such coarse deposits are widely preserved at the K/T boundary. Impact wave deposits have not been found elsewhere on the globe, suggesting the impact occurred between North and South America. The coarse deposits preserved in Deep Sea Drilling Project (DSDP) holes 151-3 suggest the impact occurred nearby. Subsequent tectonism has complicated the picture.

  3. Geochemistry of K/T boundaries in India and contributions of Deccan volcanism

    NASA Technical Reports Server (NTRS)

    Bhandari, N.; Gupta, M.; Pandey, J.; Shukla, P. N.

    1988-01-01

    Three possible Cretaceous/Tertiary (K/T) boundary sections in the Indian subcontinent were studied for their geochemical and fossil characteristics. These include two marine sections of Meghalaya and Zanskar and one continental section of Nagpur. The Um Sohryngkew river section of Meghalaya shows a high iridium, osmium, iron, cobalt, nickel and chromium concentration in a 1.5 cm thick limonitic layer about 30 cm below the planktonic Cretaceous-Palaeocene boundary identified by the characteristic fossils. The Bottaccione and Contessa sections at Gubbio were also analyzed for these elements. The geochemical pattern at the boundary at the Um Sohryngkew river and Gubbio sections are similar but the peak concentrations and the enrichment factors are different. The biological boundary is not as sharp as the geochemical boundary and the extinction appears to be a prolonged process. The Zanskar section shows, in general, similar concentration of the siderophile, lithophile and rare earth elements but no evidence of enrichment of siderophiles has so far been observed. The Takli section is a shallow inter-trappean deposit within the Deccan province, sandwiched between flow 1 and flow 2. The geochemical stratigraphy of the inter-trappeans is presented. The various horizons of ash, clay and marl show concentration of Fe and Co, generally lower than the adjacent basalts. Two horizons of slight enrichment of iridium are found within the ash layers, one near the contact of flow 1 and other near the contact of flow 2, where iridium occurs at 170 and 260 pg/g. These levels are lower by a factor of 30 compared to Ir concentration in the K/T boundary in Meghalaya section. If the enhanced level of some elements in a few horizons of the ash layer are considered as volcanic contribution by some fractionation processes than the only elements for which it occurs are REE, Ir and possibly Cr.

  4. Geochemical evidences for two chondritic-like cometary or asteroidal impacts before and at the K/T boundary

    NASA Technical Reports Server (NTRS)

    Liu, Y.-G.; Schmitt, R. A.

    1993-01-01

    A number of geological and palaeontological evidences support multiple impacts of cometary showers within a short time (approximately 1-3 Ma) and their connection with mass extinctions. Observations include clustered crater ages, stratigraphic horizons of impact ejecta closely spaced in time, and evidence for stepwise mass extinctions spanning intervals of 1-3 Ma. For the K/T boundary, three candidates, Popigai, Manson, and Yucatan, have been proposed as impact craters. Two distinct strata at the K/T boundary in western North America have been interpreted as evidence for two sequential impacts. If multiple impacts occurred within a time span of about 1 Ma then multiple Ir enrichments should be observed. DSDP Hole 577B on the Shatsky Plateau in the northern Pacific at K/T time is the first site. Samples contain approximately greater than 97 percent CaCO3, which exhibit clear chemical signals associated with asteroidal/cometary impact. Ir, Fe, and Cr data are presented. From the Th-normalized data, two satellite peaks below the major peak at 78 cm and 81 cm of 577B-1-4 are clearly shown. The major Ir peak (K/T boundary) is at 72 cm. Fe and Cr, from C1-like impactor ejecta fallout, also show two peaks at the same positions. For hole 738C on the southern Kerguelen Plateau, Ir values reach a peak concentration of 18 ppb in the clay layer at 96.0-96.2 cm in section 20R-5, and gradually tail off. In the sample 115 cm above the boundary, Ir concentrations have still not reached background levels. From the Ir peak downward to the lowermost sample analyzed at 102 cm, the Ir concentration is still as high as 1.7 ppb. From the Th-normalized data, we observe a small Ir/Th peak at 100-101 cm. Though this peak is within the error margin, the trend is clear. Fe and Cr exhibit the same pattern. The third case is Hole 690C on the Queen Maud Ridge. Again, the Ir/Th plot indicates the strong possibility of satellite peaks at approximately 52 cm. The main peak is at 39-40 cm. For the

  5. Climatic changes resulting from mass extinctions at the K-T boundary (and other bio-events)

    NASA Technical Reports Server (NTRS)

    Rampino, Michael R.; Volk, Tyler

    1988-01-01

    The mass extinctions at the Cretaceous-Tertiary (K-T) boundary include about 90 percent of marine calcareous nannoplankton (coccoliths), and carbon-isotope data show that marine primary productivity was drastically reduced for about 500,000 years after the boundary event, the so-called Strangelove Ocean effect. One result of the elimination of most marine phytoplankton would have been a severe reduction in production of dimethyl sulfide (DMS), a biogenic gas that is believed to be the major precursor of cloud condensation nuclei (CCN) over the oceans. A drastic reduction in marine CCN should lead to a cloud canopy with significantly lower reflectivity, and hence cause a significant warming at the earth's surface. Calculations suggest that, all other things being held constant, a reduction in CCN of more than 80 percent (a reasonable value for the K-T extinctions) could have produced a rapid global warming of 6 C or more. Oxygen-isotope analyses of marine sediments, and other kinds of paleoclimatic data, have provided for a marked warming, and a general instability of climate coincident with the killoff of marine plankton at the K-T boundary. Similar reductions in phytoplankton abundance at other boundaries, as indicated by marked shifts in carbon-isotope curves, suggest that severe temperature changes may have accompanied other mass extinctions, and raises the intriguing possibility that the extinction events themselves could have contributed to the climatic instabilities at critical bio-events in the geologic record.

  6. Weathering and precipitation after meteorite impact of Ni, Cr, Fe, Ca and Mn in K-T boundary clays from Stevns Klint

    NASA Astrophysics Data System (ADS)

    Miyano, Yumiko; Yoshiasa, Akira; Tobase, Tsubasa; Isobe, Hiroshi; Hongu, Hidetomo; Okube, Maki; Nakatsuka, Akihiko; Sugiyama, Kazumasa

    2016-05-01

    Ni, Cr, Fe, Ca and Mn K-edge XANES and EXAFS spectra were measured on K-T boundary clays from Stevns Klint in Denmark. According to XANES spectra and EXAFS analyses, the local structures of Ni, Cr and Fe in K-T boundary clays is similar to Ni(OH)2, Cr2O3 and FeOOH, respectively. It is assumed that the Ni, Cr and Fe elements in impact related glasses is changing into stable hydrate and oxide by the weathering and diagenesis at the surface of the Earth. Ca in K-T boundary clays maintains the diopside-like structure. Local structure of Ca in K-T clays seems to keep information on the condition at meteorite impact. Mn has a local structure like MnCO3 with divalent state. It is assumed that the origin on low abundant of Mn in the Fe-group element in K-T clays was the consumption by life activity and the diffusion to other parts.

  7. Mass extinctions, atmospheric sulphur and climatic warming at the K/T boundary

    NASA Technical Reports Server (NTRS)

    Rampino, Michael R.; Volk, Tyler

    1988-01-01

    The possible climatic effects of a drastic decrease in cloud condensation nuclei (CCN) associated with a severe reduction in the global marine phytoplankton abundance are investigated. Calculations suggest that a reduction in CCN of more than 80 percent and the resulting decrease in marine cloud albedo could have produced a rapid global warming of 6 C or more. Oxygen isotope analyses of marine sediments from many parts of the world have been interpreted as indicating a marked warming coincident with the demise of calcareous nannoplankton at the K/T boundary. Decreased marine cloud albedo and resulting high sea surface temperatures could have been a factor in the maintenance of low productivity in the 'Strangelove Ocean' period following the K/T extinctions.

  8. Micropaleontological and Paleomagnetic Characterization of La Ceiba K/T Boundary Section, Central Mexico

    NASA Astrophysics Data System (ADS)

    Martínez-López, M.; Urrutia-Fucugauchi, J.

    2007-05-01

    We report results of a micropaleontological and magnetostratigraphic study of the La Ceiba section that spans the K/T boundary. La Ceiba is located in central Mexico (20o 19.8' N, 97o 41.0' W) within the Tampico-Mizantla basin. The K/T boundary is marked by a clastic unit of about one-meter thickness intercalated between the carbonate hemipelagic marls of the Cretaceous Mendez Formation and the Paleocene Velasco Formation. The clastic unit can be divided into four sub-units, according to their texture and architectural characteristics following Arenillas et al. (2002). The basal sub-unit is formed by calcareous marls and is rich in shocked quartz and millimeter size spherules with microtektites and bioclasts of shallow water origin. The second sub-unit is formed by medium-grained sandstones, with clasts and quartz fragments, feldspars, metamorphic and calcareous fragments and re-worked benthic and planktic foraminifera. The third sub-unit is composed by a single body of medium- to fine-grained sandstones with tabular geometry. In this sub-unit, cross- and parallel-lamination trough cross-stratification, current ripples and climbing ripples have been observed. The top sub-unit is a tabular body of fine-grained sandstones, showing parallel-lamination and low-angle cross-lamination, with asymmetric ripples and burrow traces to the top. For the paleontologic and paleomagnetic study we collected twenty-five oriented samples across the section. We measured the low-field susceptibility, intensity and direction of the NRM. The vectorial composition and stability of NRM were analyzed by progressive thermal and alternating field demagnetization. Vectorial orthogonal diagrams and vector subtraction and principal component analysis were used to determine the characteristic magnetization and secondary components for each sample. The characteristic NRM negative inclination and southward declination in the K/T clastic sediments indicate a reverse polarity, which is correlated to

  9. K-T impact(s): Continental, oceanic or both

    NASA Technical Reports Server (NTRS)

    Sharpton, V. L.; Schuraytz, B. C.; Murali, A. V.; Ryder, G.; Burke, K.

    1988-01-01

    Although geochemical and mineralogical evidence indicate that a major accretionary event occurred at the K-T boundary, no impact crater of suitable size and age was recognized. The 35 km Manson Structure, Iowa, was suggested recently as a possibility and Ar-40/Ar-39 determinations indicate that its formation age is indistinguishable from that of the K-T boundary. In order to test a possible association between Manson and the K-T boundary clay, the geochemistry and mineralogy of the K-T boundary clays at the Scollard Canyon section, Alberta and the Starkville South section, Colorado are compared with three dominant lithologies affected by the Manson impact: Proterozoic red clastics, underlying late-state granites, and gneisses. The chemical and mineralogical makeup of the Scollard Canyon boundary clay and its clastic constituents are presented, commenting on the implications for impact models. An impact into crystalline material of continental affinity appears to be required to explain the mineralogy and chemistry of the Scollard Canyon (and other Western N. American K-T sections). The low REE abundances of some K-T boundary layers are unusual but perhaps attempts should be made to understand the contributions of individual crustal components (e.g., carbonates, arkoses) as well as the potential for alteration involving these and other elements during and after impact-induced vaporization, before mantle excavation is invoked. If further studies confirm the results of published studies of marine boundary clays that indicate an oceanic target, attention must be paid to the possibility that multiple impacts occurred at the K-T boundary - one or more on the continents and one or more in the ocean.

  10. Environments and extinctions at the K-T boundary in eastern Montana are compatible with an asteroid impact

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Fastovsky, D.E.; Sheehan, P.M.

    1992-01-01

    In the terrestrial latest Cretaceous Hell Creek (HC) Formation, both non-biotic events and patterns of extinction and survivorship are consistent with an asteroid impact causing the extinctions. Environments through the last 2--3 million-year interval represented by the HC remained relatively constant: an aggrading coastal lowland dissected by meandering rivers. The K-T boundary occurred during an abrupt change to impeded drainage represented by coals and pond deposits formed under low-energy conditions. Because of the close temporal proximity of the sediments of the Paleocene Cannonball Sea to the K-T boundary in South Dakota, impeded drainage in the earliest Paleocene in eastern Montanamore » may be attributable to riverine base-level changes associated with a renewed transgression of the western interior sea during the K-T transition. Patterns within the biota mirror those of the paleoenvironments. The ecological diversity of HC dinosaurs remains statistically unchanged through HC time. Analyses of vertebrates at the species level indicate a differential extinction in which the terrestrial biota underwent far more extinction than its aquatic counterpart. There is no evidence for changing environments in the upper HC, and there is circumstantial evidence that the latest Cretaceous was a time of renewed transgression rather than regression. Likewise, biotic patterns do not accord with gradual, environmentally driven extinctions. While the paleoenvironmental change that marks the K-T transition in eastern Montana accounts for some of the extinctions, the pattern of differential extinction is concordant with an asteroid impact. In this scenario, aquatic ecosystems and some land-based food chains would be buffered by detritus-based feeding. Terrestrial systems, dependent upon primary productivity, would undergo a short-term loss of resources causing extinctions.« less

  11. First Evidence for a Massive Extinction Event Affecting Bees Close to the K-T Boundary

    PubMed Central

    Rehan, Sandra M.; Leys, Remko; Schwarz, Michael P.

    2013-01-01

    Bees and eudicot plants both arose in the mid-late Cretaceous, and their co-evolutionary relationships have often been assumed as an important element in the rise of flowering plants. Given the near-complete dependence of bees on eudicots we would expect that major extinction events affecting the latter would have also impacted bees. However, given the very patchy distribution of bees in the fossil record, identifying any such extinctions using fossils is very problematic. Here we use molecular phylogenetic analyses to show that one bee group, the Xylocopinae, originated in the mid-Cretaceous, coinciding with the early radiation of the eudicots. Lineage through time analyses for this bee subfamily show very early diversification, followed by a long period of seemingly no radiation and then followed by rapid diversification in each of the four constituent tribes. These patterns are consistent with both a long-fuse model of radiation and a massive extinction event close to the K-T boundary. We argue that massive extinction is much more plausible than a long fuse, given the historical biogeography of these bees and the diversity of ecological niches that they occupy. Our results suggest that events near the K-T boundary would have disrupted many plant-bee relationships, with major consequences for the subsequent evolution of eudicots and their pollinators. PMID:24194843

  12. First evidence for a massive extinction event affecting bees close to the K-T boundary.

    PubMed

    Rehan, Sandra M; Leys, Remko; Schwarz, Michael P

    2013-01-01

    Bees and eudicot plants both arose in the mid-late Cretaceous, and their co-evolutionary relationships have often been assumed as an important element in the rise of flowering plants. Given the near-complete dependence of bees on eudicots we would expect that major extinction events affecting the latter would have also impacted bees. However, given the very patchy distribution of bees in the fossil record, identifying any such extinctions using fossils is very problematic. Here we use molecular phylogenetic analyses to show that one bee group, the Xylocopinae, originated in the mid-Cretaceous, coinciding with the early radiation of the eudicots. Lineage through time analyses for this bee subfamily show very early diversification, followed by a long period of seemingly no radiation and then followed by rapid diversification in each of the four constituent tribes. These patterns are consistent with both a long-fuse model of radiation and a massive extinction event close to the K-T boundary. We argue that massive extinction is much more plausible than a long fuse, given the historical biogeography of these bees and the diversity of ecological niches that they occupy. Our results suggest that events near the K-T boundary would have disrupted many plant-bee relationships, with major consequences for the subsequent evolution of eudicots and their pollinators.

  13. The Cretaceous-Tertiary (K/T) impact: One or more source craters?

    NASA Technical Reports Server (NTRS)

    Koeberl, Christian

    1992-01-01

    The Cretaceous-Tertiary (K/T) boundary is marked by signs of a worldwide catastrophe, marking the demise of more than 50 percent of all living species. Ever since Alvarez et al. found an enrichment of IR and other siderophile elements in rocks marking the K/T boundary and interpreted it as the mark of a giant asteroid (or comet) impact, scientists have tried to understand the complexities of the K/T boundary event. The impact theory received a critical boost by the discovery of shocked minerals that have so far been found only in association with impact craters. One of the problems of the K/T impact theory was, and still is, the lack of an adequate large crater that is close to the maximum abundance of shocked grains in K/T boundary sections, which was found to occur in sections in Northern America. The recent discovery of impact glasses from a K/T section in Haiti has been crucial in establishing a connection with documented impact processes. The location of the impact-glass findings and the continental nature of detritus found in all K/T sections supports at least one impact site near the North American continent. The Manson Impact Structure is the largest recognized in the United States, 35 km in diameter, and has a radiometric age indistinguishable from that of the Cretaceous-Tertiary (K/T) boundary. Although the Manson structure may be too small, it may be considered at least one element of the events that led to the catastrophic loss of life and extinction of many species at that time. A second candidate for the K/T boundary crater is the Chicxulub structure, which was first suggested to be an impact crater more than a decade ago. Only recently, geophysical studies and petrological (as well as limited chemical) analyses have indicated that this buried structure may in fact be of impact origin. At present we can conclude that the Manson crater is the only confirmed crater of K/T age, but Chicxulub is becoming a strong contender; however, detailed geochemical

  14. The Cretaceous-Tertiary (K/T) impact: One or more source craters?

    NASA Astrophysics Data System (ADS)

    Koeberl, Christian

    The Cretaceous-Tertiary (K/T) boundary is marked by signs of a worldwide catastrophe, marking the demise of more than 50 percent of all living species. Ever since Alvarez et al. found an enrichment of IR and other siderophile elements in rocks marking the K/T boundary and interpreted it as the mark of a giant asteroid (or comet) impact, scientists have tried to understand the complexities of the K/T boundary event. The impact theory received a critical boost by the discovery of shocked minerals that have so far been found only in association with impact craters. One of the problems of the K/T impact theory was, and still is, the lack of an adequate large crater that is close to the maximum abundance of shocked grains in K/T boundary sections, which was found to occur in sections in Northern America. The recent discovery of impact glasses from a K/T section in Haiti has been crucial in establishing a connection with documented impact processes. The location of the impact-glass findings and the continental nature of detritus found in all K/T sections supports at least one impact site near the North American continent. The Manson Impact Structure is the largest recognized in the United States, 35 km in diameter, and has a radiometric age indistinguishable from that of the Cretaceous-Tertiary (K/T) boundary. Although the Manson structure may be too small, it may be considered at least one element of the events that led to the catastrophic loss of life and extinction of many species at that time. A second candidate for the K/T boundary crater is the Chicxulub structure, which was first suggested to be an impact crater more than a decade ago. Only recently, geophysical studies and petrological (as well as limited chemical) analyses have indicated that this buried structure may in fact be of impact origin. At present we can conclude that the Manson crater is the only confirmed crater of K/T age, but Chicxulub is becoming a strong contender; however, detailed geochemical

  15. Monotop signature from the supersymmetric t t¯ H channel

    NASA Astrophysics Data System (ADS)

    Gonçalves, Dorival; Sakurai, Kazuki; Takeuchi, Michihisa

    2016-10-01

    We point out that a distinctive monotop signature is present in natural supersymmetry scenarios when a scalar top quark and Higgsinos are almost mass degenerate. This signature originates from a supersymmetric counterpart of the t t ¯H process, i.e. p p →t ˜t h ˜. Unlike monojet signatures exploiting initial state radiation, this channel can be regarded as a clear signature of a light stop and Higgsinos, allowing a direct probe of the stop and neutralino sectors. The production rate of this channel largely depends on the up-type Higgsino components in the neutralinos while the stop sector is sensitive to angular distributions of the top-quark's decay products. We develop an optimal search strategy to capture the supersymmetric t t ¯ H process and find that a high luminosity LHC can probe the stop and Higgsino sectors with mt˜1≲380 GeV and mt˜1-mχ˜1 0≲mW . Additionally, we propose a kinematic variable with which one can measure the stop mixing in this channel.

  16. Characterization of geostationary particle signatures based on the 'injection boundary' model

    NASA Technical Reports Server (NTRS)

    Mauk, B. H.; Meng, C.-I.

    1983-01-01

    A simplified analytical procedure is used to characterize the details of geostationary particle signatures, in order to lend support to the 'injection boundary' concept. The signatures are generated by the time-of-flight effects evolving from an initial sharply defined, double spiraled boundary configuration. Complex and highly variable dispersion patterns often observed by geostationary satellites are successfully reproduced through the exclusive use of the most fundamental convection configuration characteristics. Many of the details of the patterns have not been previously presented. It is concluded that most of the dynamical dispersion features can be mapped to the double spiral boundary without further ad hoc assumptions, and that predicted and observed dispersion patterns exhibit symmetries distinct from those associated with the quasi-stationary particle convection patterns.

  17. Rocks, resolution, and the record at the terrestrial K/T boundary, eastern Montana and western North Dakota

    NASA Technical Reports Server (NTRS)

    Fastovsky, D. E.

    1988-01-01

    Reconstructions of mass extinction events are based upon faunal patterns, reconstructed from numerical and diversity data ultimately derived from rocks. It follows that geological complexity must not be subsumed in the desire to establish patterns. This is exemplified at the Terrestrial Cretaceous-Tertiary (K/T) boundary in eastern Montana and western North Dakota, where there are represented all of the major indicators of the terrestrial K/T transition: dinosaurian and non-dinosaurian vertebrate faunas, pollen, a megaflora, iridium, and shocked quartz. It is the patterns of these indicators that shape ideas about the terrestrial K/T transition. In eastern Montana and western North Dakota, the K/T transition is represented lithostratigraphically by the Cretaceous Hell Creek Formation, and the Tertiary Tullock Formation. Both of these are the result of aggrading, meandering, fluvial systems, a fact that has important consequences for interpretations of fossils they contain. Direct consequences of the fluvial depositional environments are: facies are lenticular, interfingering, and laterally discontinuous; the occurrence of fossils in the Hell Creek and Tullock formations is facies-dependent; and the K/T sequence in eastern Montana and western North Dakota is incomplete, as indicated by repetitive erosional contacts and soil successions. The significance for faunal patterns of lenticular facies, facies-dependent preservation, and incompleteness is discussed. A project attempting to reconstruct vertebrate evolution in a reproducible manner in Hell Creek-type sediments must be based upon a reliable scale of correlations, given the lenticular nature of the deposits, and a recognition of the fact that disparate facies are not comparable in terms of either numbers of preserved vertebrates or depositional rates.

  18. Dinosaurs, spherules, and the “magic” layer: A new K-T boundary clay site in Wyoming

    NASA Astrophysics Data System (ADS)

    Bohor, Bruce F.; Triplehorn, Don M.; Nichols, Douglas J.; Millard, Hugh T., Jr.

    1987-10-01

    A new Cretaceous-Tertiary (K-T) boundary clay site has been found along Dogie Creek in Wyoming in the drainage of Lance Creek—the type area of the Lance Formation of latest Cretaceous age. The boundary clay was discovered in the uppermost part of the Lance Formation, 4 7 cm beneath the lowest lignite in the Paleocene Fort Union Formation and approximately 1 m above a fragmented dinosaur bone. The boundary clay consists of a basal kaolinitic claystone layer as much as 3 cm thick containing hollow goyazite spherules, overlain by a 2 3 mm smectitic layer (the “magic” layer) containing both shock-metamorphosed minerals and an iridium anomaly of 21 ppb. A palynological break coincides with the base of the claystone layer; numerous Late Cretaceous palynomorph species terminate at this boundary. The paleontological significance of this new boundary site lies in its close association with the well-studied assemblage of dinosaurs and other vertebrates and flora within the type area of the Lance Formation. The spherules at the Dogie Creek site are extremely well preserved by virtue of their replacement by the mineral goyazite. This preservation should facilitate the resolution of the origin of the spherules and of their host layer.

  19. Magnetic microspherules associated with the K/T and upper Eocene extinction events

    NASA Technical Reports Server (NTRS)

    Cisowski, Stanley M.

    1988-01-01

    Magnetic microspherules were identified in over 20 K/T boundary sites, and in numerous Deep Sea Drilling Project (DSDP) cores from the Caribbean and Pacific, synchronous with the extinction of several radiolarian species near the end of the Eocene. The K/T magnetic spherules are of particular interest as carriers of Ir and other siderophiles generally found in abundance in K/T boundary clay. Furthermore the textures and unusual chemistry of their component magnetic phases indicate an origin at high temperature, possibly related to (an) unusual event(s) marking the end of the Cretaceous and Eocene periods. Their origin, along with the non-magnetic (sanidine) spheules, is generally ascribed directly to megaimpact events hypothesized to have periodically disrupted life on Earth. A survey of microspherical forms associated with known meteorite and impact derived materials reveals fundamental differences from the extinction related spherules. Low temperature magnetic experiments on the K/T and Upper Eocene spheroids indicate that, unlike tektites, extremely small superparamagnetic carriers are not present in abundance. The extensive subaerial exposure of Cretaceous combustible black shale during sea level regression in the latest Cretaceous represents a potential source for the magnetic spheroids found in certain K/T boundary clays. The recent discovery of high Ir abundances distributed above and below the K/T boundary within shallow water sediments in Israel, which also contain the most extensive known zones of combustion metamorphism, the so called Mottled Zone, adds a further dramatic footnote to the proposed association between the magnetic spheroids and combustion of organic shales. Interestingly, the Mottled Zone also contains the rare mineral magnesioferrite, which was identified both within the K/T magnetic spheroids and as discrete crystals in boundary clay from marine and continental sites.

  20. Synchroneity of the K-T oceanic mass extinction and meteorite impact: Blake Nose, western North Atlantic

    USGS Publications Warehouse

    Norris, R.D.; Huber, B.T.; Self-Trail, J.

    1999-01-01

    A 10-cm-thick layer of green spherules occurs precisely at the biostratigraphic boundary between the Cretaceous and Paleogene (K-T boundary) at Ocean Drilling Program Site 1049 (lat 30??08???N, long 76??06???W). The spherulitic layer contains abundant rock fragments (chalk, limestone, dolomite, chert, mica books, and schist) as well as shocked quartz, abundant large Cretaceous planktic foraminifera, and rounded clasts of clay as long as 4 mm interpreted as altered tektite glass probably derived from the Chicxulub impact structure. Most of the Cretaceous foraminifera present above the spherule layer are not survivors since small specimens are conspicuously rare compared to large individuals. Instead, the Cretaceous taxa in Paleocene sediments are thought to be reworked. The first Paleocene planktic foraminifera and calcareous nannofossil species are recorded immediately above the spherule bed, the upper part of which contains an iridium anomaly. Hence, deposition of the impact ejecta exactly coincided with the biostratigraphic K-T boundary and demonstrates that the impact event was synchronous with the evolutionary turnover in the oceans. These results are consistent with a reanalysis of the biostratigraphy of the K-T boundary stratotype, which argues that shallow-marine K-T boundary sections are not biostratigraphically more complete than deep-sea K-T boundary sites.

  1. A regional perspective on the palynofloral response to K-T boundary event(s) with emphasis on variations imposed by the effects of sedimentary facies and latitude

    NASA Technical Reports Server (NTRS)

    Sweet, A. R.

    1988-01-01

    Palynological studies deal with fossil reproductive bodies that were produced by fully functioning plants, whereas most faunal studies are based on death assemblages. Therefore, changes in pollen and spore assemblages cannot be used directly as evidence of catastrophic mass killings but only to indicate changes in ecological conditions. The impact of the Cretaceous-Tertiary boundary event on terrestrial plant communities is illustrated by the degree, rate and selectivity of change. As in most classical palynological studies, the degree of change is expressed in terms of relative abundance and changes in species diversity. It is recognized that sampling interval and continuity of the rock record within individual sections can affect the percieved rate of change. Even taking these factors into account, a gradual change in relative abundance and multiple levels of apparent extinctions, associated with the interval bounding the K-T boundary, can be demonstrated. Climatic change, which locally exceeds the tolerance of individual species, and the possible loss of a group of pollinating agents are examined as possible explanations for the selectivity of apparent extinctions and/or locally truncated occurrences. The aspects of change are demonstrated with data from four different K-T boundary localities in Western Canada between paleolatitudes 60 and 75 deg north. Together, the four localities discussed allow changes imposed by latitude and differences in the depositional environment be isolated from the boundary event itself which is reflected by the truncated ranges of several species throughout the region of study. What must be recognized is that variations in the response of vegetation to the K-T boundary event(s) occurred throughout the Western Interior basin.

  2. Spatial and Temporal Variations of the K/T Boundary Record: Implications Concerning Possible Megaseiche in the Reworking Processes

    NASA Astrophysics Data System (ADS)

    Maurrasse, F. J.; Lamolda, M. A.

    2004-05-01

    Major physical disruptions characterize the sedimentary record of the K/T boundary (KTB) layer from different sites in the Southern Peninsula of Haiti as well as in diverse areas of the world. These disturbances are most important within the vicinity of the crater at Chicxulub, Yucatan, Mexico, and 65 million years ago that can be chronologically correlated with the bolide impact postulated by Alvarez et al (1981). At all sites the KTB layer shows spatial and temporal differences even within short distances, and the complexity of its characteristic signals includes serious micropaleontological inconsistencies with mixed biotic assemblages that perpetuate divergence of interpretations, thereby they raise doubts on the timing and real causal mechanisms of the biotic turnover that characterizes the boundary. Indeed, often the biostratigraphic signals are difficult to resolve because of hiatuses, or sediments are highly reworked, and distinct taxonomic successions are not clearly defined. Well defined as well as cryptic primary sedimentary structures within the boundary layer are constant at all outcrops, and they indicate complex, multiphase, subaqueous flow processes that affected sedimentation of the KTB layer at different times. The structures are known to characterize oscillatory wave processes that affect cohesionless sediments, and such water motion is only known to be associated with seiche as a modern analog that may have generated the amalgamation recorded at the KTB layer. We believe that "Megaseiche" associated with the KT impact event and its subsequent effects provides a plausible unifying mechanism to explain how various levels of the water column in different large basins can oscillate to develop the structures observed. Because of the magnitude of the bolide impact that generated initial tsunamis and large seismic waves worldwide, megaseiches of different frequencies and nodal modes must have developed in the oceans worldwide to leave different

  3. Composition of 298 Baptistina: Implications for the K/T impactor link

    NASA Astrophysics Data System (ADS)

    Reddy, V.; Emery, J. P.; Gaffey, M. J.; Bottke, W. F.; Cramer, A.; Kelley, M. S.

    2009-01-01

    Bottke et al. (2007) suggested that the breakup of the Baptistina asteroid family (BAF) 160+30 /-20 Myr ago produced an “asteroid shower” that increased by a factor of 2-3 the impact flux of kilometer-sized and larger asteroids striking the Earth over the last ~120 Myr. This result led them to propose that the impactor that produced the Cretaceous/Tertiary (K/T) mass extinction event 65 Myr ago also may have come from the BAF. This putative link was based both on collisional/dynamical modeling work and on physical evidence. For the latter, the available broadband color and spectroscopic data on BAF members indicate many are likely to be dark, low albedo asteroids. This is consistent with the carbonaceous chondrite-like nature of a 65 Myr old fossil meteorite (Kyte 1998)and with chromium from K/T boundary sediments with an isotopic signature similar to that from CM2 carbonaceous chondrites. To test elements of this scenario, we obtained near-IR and thermal IR spectroscopic data of asteroid 298 Baptistina using the NASA IRTF in order to determine surface mineralogy and estimate its albedo. We found that the asteroid has moderately strong absorption features due to the presence of olivine and pyroxene, and a moderately high albedo (~20%). These combined properties strongly suggest that the asteroid is more like an S-type rather than Xc-type (Mothé-Diniz et al. 2005). This weakens the case for 298 Baptistina being a CM2 carbonaceous chondrite and its link to the K/T impactor. We also observed several bright (V Mag. ≤16.8) BAF members to determine their composition.

  4. Histone methylation mediates plasticity of human FOXP3(+) regulatory T cells by modulating signature gene expressions.

    PubMed

    He, Haiqi; Ni, Bing; Tian, Yi; Tian, Zhiqiang; Chen, Yanke; Liu, Zhengwen; Yang, Xiaomei; Lv, Yi; Zhang, Yong

    2014-03-01

    CD4(+) FOXP3(+) regulatory T (Treg) cells constitute a heterogeneous and plastic T-cell lineage that plays a pivotal role in maintaining immune homeostasis and immune tolerance. However, the fate of human Treg cells after loss of FOXP3 expression and the epigenetic mechanisms contributing to such a phenotype switch remain to be fully elucidated. In the current study, we demonstrate that human CD4(+) CD25(high) CD127(low/-) Treg cells convert to two subpopulations with distinctive FOXP3(+) and FOXP3(-) phenotypes following in vitro culture with anti-CD3/CD28 and interleukin-2. Digital gene expression analysis showed that upon in vitro expansion, human Treg cells down-regulated Treg cell signature genes, such as FOXP3, CTLA4, ICOS, IKZF2 and LRRC32, but up-regulated a set of T helper lineage-associated genes, especially T helper type 2 (Th2)-associated, such as GATA3, GFI1 and IL13. Subsequent chromatin immunoprecipitation-sequencing of these subpopulations yielded genome-wide maps of their H3K4me3 and H3K27me3 profiles. Surprisingly, reprogramming of Treg cells was associated with differential histone modifications, as evidenced by decreased abundance of permissive H3K4me3 within the down-regulated Treg cell signature genes, such as FOXP3, CTLA4 and LRRC32 loci, and increased abundance of H3K4me3 within the Th2-associated genes, such as IL4 and IL5; however, the H3K27me3 modification profile was not significantly different between the two subpopulations. In conclusion, this study revealed that loss of FOXP3 expression from human Treg cells during in vitro expansion can induce reprogramming to a T helper cell phenotype with a gene expression signature dominated by Th2 lineage-associated genes, and that this cell type conversion may be mediated by histone methylation events. © 2013 John Wiley & Sons Ltd.

  5. Histone methylation mediates plasticity of human FOXP3+ regulatory T cells by modulating signature gene expressions

    PubMed Central

    He, Haiqi; Ni, Bing; Tian, Yi; Tian, Zhiqiang; Chen, Yanke; Liu, Zhengwen; Yang, Xiaomei; Lv, Yi; Zhang, Yong

    2014-01-01

    CD4+ FOXP3+ regulatory T (Treg) cells constitute a heterogeneous and plastic T-cell lineage that plays a pivotal role in maintaining immune homeostasis and immune tolerance. However, the fate of human Treg cells after loss of FOXP3 expression and the epigenetic mechanisms contributing to such a phenotype switch remain to be fully elucidated. In the current study, we demonstrate that human CD4+ CD25high CD127low/− Treg cells convert to two subpopulations with distinctive FOXP3+ and FOXP3− phenotypes following in vitro culture with anti-CD3/CD28 and interleukin-2. Digital gene expression analysis showed that upon in vitro expansion, human Treg cells down-regulated Treg cell signature genes, such as FOXP3, CTLA4, ICOS, IKZF2 and LRRC32, but up-regulated a set of T helper lineage-associated genes, especially T helper type 2 (Th2)-associated, such as GATA3, GFI1 and IL13. Subsequent chromatin immunoprecipitation-sequencing of these subpopulations yielded genome-wide maps of their H3K4me3 and H3K27me3 profiles. Surprisingly, reprogramming of Treg cells was associated with differential histone modifications, as evidenced by decreased abundance of permissive H3K4me3 within the down-regulated Treg cell signature genes, such as FOXP3, CTLA4 and LRRC32 loci, and increased abundance of H3K4me3 within the Th2-associated genes, such as IL4 and IL5; however, the H3K27me3 modification profile was not significantly different between the two subpopulations. In conclusion, this study revealed that loss of FOXP3 expression from human Treg cells during in vitro expansion can induce reprogramming to a T helper cell phenotype with a gene expression signature dominated by Th2 lineage-associated genes, and that this cell type conversion may be mediated by histone methylation events. PMID:24152290

  6. Twelve-year trail of clues leads to impact crater from the K-T boundary

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Levi, B.G.

    1992-12-01

    In 1980, scientists at the University of California, Berkeley proposed that a massive comet or asteroid might have struck the earth about 65 million years ago, changing the earth's climate so drastically that dinosaurs and other creatures could no longer survive. This article describes the evidence for the elusive crater required to support this theory. The structure in question is 180 km in diameter and is submeged beneath the Yucatan peninsula and centered on the Mexican village of Chicxulub. Material drilled from this crater has been linked chemically and geologically to pellets found in Northeast Mexico and Haiti. The linkmore » between this ejecta material and the crater was confirmed by a report that the Chicxulub melt rock and pellets are coeval, all having ages consistent with 65 million years. This puts the possible impact at the K-T boundary -- the dividing line between the Cretaceous period of the dinosaurs and the Tertiary period of the mammals. 13 refs.« less

  7. Iridium enrichment in volcanic dust from blue ice fields, Antarctica, and possible relevance to the K/T boundary event

    NASA Technical Reports Server (NTRS)

    Koeberl, Christian

    1989-01-01

    The analysis of samples of volcanic ash dust layers from the Lewis Cliff/Beardmore Glacier in Antarctica shows that some of the samples contain Ir concentrations up to 7.5 ppb. It is shown that the Ir is positively correlated with Se, As, Sb, and other volcanogenic elements. The results show that Ir may be present in some volcanic ash deposits, suggesting that the Ir in the K/T boundary clays is not necessarily of cosmic origin, but may have originated from mantle reservoirs tapped during extensive volcanic eruptions possibly triggered by impact events.

  8. Geochemistry of impact glasses from the K/T boundary in Haiti - Relation to smectites and a new type of glass

    NASA Technical Reports Server (NTRS)

    Koeberl, Christian; Sigurdsson, Haraldur

    1992-01-01

    Detailed element analyses were carried out on 12 black and seven yellow glasses from the K/T boundary section at Beloc (Haiti), and of three samples from smectite mantles around black glasses. The results obtained for bulk black and yellow glasses show differences between these, confirming the results of Sigurdsson et al. (1991) and Izett (1991), and the results obtained on individual spherules and shards are in agreement with bulk data. The present data also demonstrate, for the first time, the existence of yellow glass samples with high CaO but low S contents, which might have formed by fusion of various proportions of carbonates and evaporites or carbonates alone. One of the black glasses was found to have higher than average SiO2 and K2O abundances but lower concentrations of all other major elements. This suggests the existence of a third glass type, named the high Si-K variety (HSi,K) glass.

  9. Evidence of volcanic ash at a K-T boundary section: Ocean drilling program hole 690 C, Maud Rise, Weddell Sea off East Antarctica

    NASA Technical Reports Server (NTRS)

    Wise, S. W.; Hamilton, N.; Pospichal, J.; Barker, P. F.; Kennett, James P.; Oconnell, S.; Bryant, W. R.; Burckle, L. H.; Egeberg, P. K.; Futterer, D. K.

    1988-01-01

    Rare vitric volcanogenic ash but more abundant clay minerals considered volcanogenic in origin are associated with an expanded and essentially complete K-T boundary sequence from Ocean Drilling Project (ODP) Hole 690 C on Maud Rise in the Weddell Sea off East Antarctica. Results at this writing are preliminary and are still based to some extent on shipboard descriptions. Further shore-based studies are in progress. It would appear, however, that the presence of volcanic ash and altered ash in the Danian section beginning at the biostratigraphically and paleomagnetically determined K-T boundary on Maud Rise can be cited as evidence of significant volcanic activity within the South Atlantic-Indian Ocean sector of the Southern Ocean coincident with the time of biotic crises at the end of the Maestrichtian. This is a postulated time of tectonic and volcanic activity within this Southern Hemisphere region, including possible initiation of the Reunion hot spot and a peak in explosive volcanism on Walvis Ridge (1) among other events. A causal relationship with the biotic crisis is possible and volcanism should be given serious consideration as a testable working hypothesis to explain these extinctions.

  10. Osmium Isotopic Composition of the Sumbar Cretaceous- Tertiary Boundary, Turkmenia

    NASA Astrophysics Data System (ADS)

    Meisel, T.; Krahenbuhl, U.; Nazarov, M. A.

    1992-07-01

    Turekian (1982) propagated the use of the osmium isotopic composition as a cosmic indicator for the origin of the high osmium (and iridium) layers at the K/T boundaries. He did not consider the osmium isotopic signature of the terrestrial mantle, which also has a chondritic evolution of the Re-Os system. Osmium cannot serve alone as an infallible indicator of the impact theory, but interesting results can be obtained from their investigation. Different K/T boundary section have been analyzed so far for ^187Os/^186Os. An overview of the values is presented in the table. Boundary Clay layer Os ratio Reference Stevns Klint fish clay 1.66 Luck and Turekian, 1983 Woodside Creek 1.12 Lichte et al., 1986 Raton Basin 1.23 Kraehenbuehl et al., 1988 Raton Basin (several) 1.15-1.23 Esser and Turekian, 1989 Sumbar (0-1 cm) 1.16 This work We obtained a complete marine section of the K/T boundary in southern Turkmenia (decribed by Alekseyev, 1988). It shows a very high Ir concentration (66 ppb) at the boundary layer and a remarkable Ir enrichment over crustal rocks continuing up to 30 cm above the boundary. Our aim of this investigation is to analyze several samples from above and below the boundary for the ^187Os/^186Os ratio to obtain a complete picture of the isotopic evolution of the section. We want to evaluate mixing of Os with chondritic ratios with Os from upper crustal rocks. Another goal is to investigate a mobilization of Os. So far only one sample has been analyzed with NTI-MS after fire assay digestion of the sample. The sample 0 to 1 cm has an ^187Os/^186Os ratio of 1.162 +- 13, which is quite low. We expect an even lower value for the boundary clay (0 cm) itself not taking into account a contribution of radiogenic osmium from the decay of terrestrial rhenium. This might put this K/T boundary section closest of all to the present day chondritic value (approx. 1.05). Further analysis will be presented at the meeting. References Alekseyev A. S., Nazarov M. A

  11. Sephardic signature in haplogroup T mitochondrial DNA

    PubMed Central

    Bedford, Felice L

    2012-01-01

    A rare combination of mutations within mitochondrial DNA subhaplogroup T2e is identified as affiliated with Sephardic Jews, a group that has received relatively little attention. Four investigations were pursued: Search of the motif in 250 000 control region records across 8 databases, comparison of frequencies of T subhaplogroups (T1, T2b, T2c, T2e, T4, T*) across 11 diverse populations, creation of a phylogenic median-joining network from public T2e control region entries, and analysis of one Sephardic mitochondrial full genomic sequence with the motif. It was found that the rare motif belonged only to Sephardic descendents (Turkey, Bulgaria), to inhabitants of North American regions known for secret Spanish–Jewish colonization, or were consistent with Sephardic ancestry. The incidence of subhaplogroup T2e decreased from the Western Arabian Peninsula to Italy to Spain and into Western Europe. The ratio of sister subhaplogroups T2e to T2b was found to vary 40-fold across populations from a low in the British Isles to a high in Saudi Arabia with the ratio in Sephardim more similar to Saudi Arabia, Egypt, and Italy than to hosts Spain and Portugal. Coding region mutations of 2308G and 14499T may locate the Sephardic signature within T2e, but additional samples and reworking of current T2e phylogenetic branch structure is needed. The Sephardic Turkish community has a less pronounced founder effect than some Ashkenazi groups considered singly (eg, Polish), but other comparisons of interest await comparable averaging. Registries of signatures will benefit the study of populations with a large number of smaller-size founders. PMID:22108605

  12. T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus

    PubMed Central

    Shuda, Masahiro; Feng, Huichen; Kwun, Hyun Jin; Rosen, Steven T.; Gjoerup, Ole; Moore, Patrick S.; Chang, Yuan

    2008-01-01

    Merkel cell polyomavirus (MCV) is a virus discovered in our laboratory at the University of Pittsburgh that is monoclonally integrated into the genome of ≈80% of human Merkel cell carcinomas (MCCs). Transcript mapping was performed to show that MCV expresses transcripts in MCCs similar to large T (LT), small T (ST), and 17kT transcripts of SV40. Nine MCC tumor-derived LT genomic sequences have been examined, and all were found to harbor mutations prematurely truncating the MCV LT helicase. In contrast, four presumed episomal viruses from nontumor sources did not possess this T antigen signature mutation. Using coimmunoprecipitation and origin replication assays, we show that tumor-derived virus mutations do not affect retinoblastoma tumor suppressor protein (Rb) binding by LT but do eliminate viral DNA replication capacity. Identification of an MCC cell line (MKL-1) having monoclonal MCV integration and the signature LT mutation allowed us to functionally test both tumor-derived and wild type (WT) T antigens. Only WT LT expression activates replication of integrated MCV DNA in MKL-1 cells. Our findings suggest that MCV-positive MCC tumor cells undergo selection for LT mutations to prevent autoactivation of integrated virus replication that would be detrimental to cell survival. Because these mutations render the virus replication-incompetent, MCV is not a “passenger virus” that secondarily infects MCC tumors. PMID:18812503

  13. T-duality simplifies bulk-boundary correspondence: the noncommutative case

    NASA Astrophysics Data System (ADS)

    Hannabuss, Keith C.; Mathai, Varghese; Thiang, Guo Chuan

    2018-05-01

    We state and prove a general result establishing that T-duality, or the Connes-Thom isomorphism, simplifies the bulk-boundary correspondence, given by a boundary map in K-theory, in the sense of converting it to a simple geometric restriction map. This settles in the affirmative several earlier conjectures of the authors and provides a clear geometric picture of the correspondence. In particular, our result holds in arbitrary spatial dimension, in both the real and complex cases, and also in the presence of disorder, magnetic fields, and H-flux. These special cases are relevant both to string theory and to the study of the quantum Hall effect and topological insulators with defects in condensed matter physics.

  14. Darkness after the K-T impact: Effects of soot

    NASA Technical Reports Server (NTRS)

    Wolbach, Wendy S.; Anders, Edward; Orth, Charles J.

    1988-01-01

    Dust from the K-T impact apparently settled from the atmosphere in less than 6 months, restoring sunlight to minimum photosynthesis levels in about 4 months. However, the discovery of a global soot component in the boundary clay makes it necessary to reconsider the problem, as soot particles not only are smaller (0.1 vs. about 0.5 micrometer) and thus settle more slowly, but also are better light absorbers (optical depth of 13 mg soot cm(-2) about 1800; and are more resistant to rainout. Still, the darkness cannot have lasted very much longer than 6 months, else no larger animals would have survived. Perhaps the soot coagulated with the rock dust and fell out with it. Evidence on this point may be sought at a relatively undisturbed K-T boundary site, such as Woodside Creek, N.Z. There the boundary clay and lowermost Tertiary strata are finely laminated and show large chemical and isotopic differences on a millimeter scale, apparently representing a detailed time sequence. Researchers studied a 3 m section across the boundary at this site, analyzing the principal forms of carbon (soot, elemental C, kerogen, and carbonate) as well as 33 elements. Correlations among the elements were sought. Apparently soot came early and coagulated with the ejecta, staying with them for the primary fallout and in the next 5 cm, but then parting company, perhaps due to size sorting.

  15. *K-means and cluster models for cancer signatures.

    PubMed

    Kakushadze, Zura; Yu, Willie

    2017-09-01

    We present *K-means clustering algorithm and source code by expanding statistical clustering methods applied in https://ssrn.com/abstract=2802753 to quantitative finance. *K-means is statistically deterministic without specifying initial centers, etc. We apply *K-means to extracting cancer signatures from genome data without using nonnegative matrix factorization (NMF). *K-means' computational cost is a fraction of NMF's. Using 1389 published samples for 14 cancer types, we find that 3 cancers (liver cancer, lung cancer and renal cell carcinoma) stand out and do not have cluster-like structures. Two clusters have especially high within-cluster correlations with 11 other cancers indicating common underlying structures. Our approach opens a novel avenue for studying such structures. *K-means is universal and can be applied in other fields. We discuss some potential applications in quantitative finance.

  16. Extraterrestrial amino acids in Cretaceous/Tertiary boundary sediments at Stevns Klint, Denmark

    NASA Astrophysics Data System (ADS)

    Zhao, Meixun; Bada, Jeffrey L.

    1989-06-01

    SINCE the discovery1 nearly a decade ago that Cretaceous/Tertiary (K/T) boundary layers are greatly enriched in iridium, a rare element in the Earth's crust, there has been intense controversy on the relationship between this Ir anomaly and the massive extinction of organisms ranging from dinosaurs to marine plankton that characterizes the K/T boundary. Convincing evidence suggests that both the Ir spike and the extinction event were caused by the collision of a large bolide (>10 km in diameter) with the Earth1-11. Alternative explanations claim that extensive, violent volcanism12-14 can account for the Ir, and that other independent causes were responsible for the mass extinctions15,16. We surmise that the collision of a massive extraterrestrial object with the Earth may have produced a unique organic chemical signature because certain meteorites, and probably comets, contain organic compounds which are either rare or non-existent on the Earth17. In contrast, no organic compounds would be expected to be associated with volcanic processes. Here we find that K/T boundary sediments at Stevns Klint, Denmark, contain both α-amino-isobutyric acid [AIB, (CH3)2CNH2COOH] and racemic isovaline [ISOVAL, CH3CH2(CH3)CNH2COOH], two amino acids that are exceedingly rare on the Earth but which are major amino acids in carbonaceous chondrites17,18. An extraterrestrial source is the most reasonable explanation for the presence of these amino acids.

  17. Origin and diagenesis of K/T impact spherules - from Haiti to Wyoming and beyond

    USGS Publications Warehouse

    Bohor, B.F.; Glass, B.P.

    1995-01-01

    Impact spherules in Cretaceous/Tertiary (K/T) boundary clays and claystones consist of two types; each type is confined to its own separate layer of the boundary couplet in the Western Hemisphere. The form and composition of each of the spherule types result from its own unique mode of origin during the K/T event. Type 1 splash-form spherules occur only in the melt-ejecta (basal) layer of the K/T couplet. This layer was deposited from a ballistic ejecta curtain composed of melt-glass droplets transported mostly within the atmosphere. In contrast, Type 2 spherules are accreted, partially crystalline, spheroidal bodies that formed by condensation of vaporized bolide and target-rock materials in an expanding fireball cloud, from which they settled out of buoyant suspension to form the fireball layer. Dendritic and skeletal Ni-rich spinel crystals are unique to these Type 2 spherules in the fireball layer. -from Authors

  18. IRLooK: an advanced mobile infrared signature measurement, data reduction, and analysis system

    NASA Astrophysics Data System (ADS)

    Cukur, Tamer; Altug, Yelda; Uzunoglu, Cihan; Kilic, Kayhan; Emir, Erdem

    2007-04-01

    Infrared signature measurement capability has a key role in the electronic warfare (EW) self protection systems' development activities. In this article, the IRLooK System and its capabilities will be introduced. IRLooK is a truly innovative mobile infrared signature measurement system with all its design, manufacturing and integration accomplished by an engineering philosophy peculiar to ASELSAN. IRLooK measures the infrared signatures of military and civil platforms such as fixed/rotary wing aircrafts, tracked/wheeled vehicles and navy vessels. IRLooK has the capabilities of data acquisition, pre-processing, post-processing, analysis, storing and archiving over shortwave, mid-wave and long wave infrared spectrum by means of its high resolution radiometric sensors and highly sophisticated software analysis tools. The sensor suite of IRLooK System includes imaging and non-imaging radiometers and a spectroradiometer. Single or simultaneous multiple in-band measurements as well as high radiant intensity measurements can be performed. The system provides detailed information on the spectral, spatial and temporal infrared signature characteristics of the targets. It also determines IR Decoy characteristics. The system is equipped with a high quality field proven two-axes tracking mount to facilitate target tracking. Manual or automatic tracking is achieved by using a passive imaging tracker. The system also includes a high quality weather station and field-calibration equipment including cavity and extended area blackbodies. The units composing the system are mounted on flat-bed trailers and the complete system is designed to be transportable by large body aircraft.

  19. Immune signatures of protective spleen memory CD8 T cells.

    PubMed

    Brinza, Lilia; Djebali, Sophia; Tomkowiak, Martine; Mafille, Julien; Loiseau, Céline; Jouve, Pierre-Emmanuel; de Bernard, Simon; Buffat, Laurent; Lina, Bruno; Ottmann, Michèle; Rosa-Calatrava, Manuel; Schicklin, Stéphane; Bonnefoy, Nathalie; Lauvau, Grégoire; Grau, Morgan; Wencker, Mélanie; Arpin, Christophe; Walzer, Thierry; Leverrier, Yann; Marvel, Jacqueline

    2016-11-24

    Memory CD8 T lymphocyte populations are remarkably heterogeneous and differ in their ability to protect the host. In order to identify the whole range of qualities uniquely associated with protective memory cells we compared the gene expression signatures of two qualities of memory CD8 T cells sharing the same antigenic-specificity: protective (Influenza-induced, Flu-TM) and non-protective (peptide-induced, TIM) spleen memory CD8 T cells. Although Flu-TM and TIM express classical phenotypic memory markers and are polyfunctional, only Flu-TM protects against a lethal viral challenge. Protective memory CD8 T cells express a unique set of genes involved in migration and survival that correlate with their unique capacity to rapidly migrate within the infected lung parenchyma in response to influenza infection. We also enlighten a new set of poised genes expressed by protective cells that is strongly enriched in cytokines and chemokines such as Ccl1, Ccl9 and Gm-csf. CCL1 and GM-CSF genes are also poised in human memory CD8 T cells. These immune signatures are also induced by two other pathogens (vaccinia virus and Listeria monocytogenes). The immune signatures associated with immune protection were identified on circulating cells, i.e. those that are easily accessible for immuno-monitoring and could help predict vaccines efficacy.

  20. Dinosaur bone beds and mass mortality: Implications for the K-T extinction

    NASA Technical Reports Server (NTRS)

    Carpenter, Kenneth

    1988-01-01

    Mass accumulations of fossilized large terrestrial vertebrate skeletons (bone beds: BB) provide a test for K-T catastrophic extinction hypotheses. The two major factors contributing to BB formation are mode of death and sedimentation rate. Catastrophic mass mortality (CMM) is the sudden death of numerous individuals where species, age, health, gender, or social ranking offer no survivorship advantage. Noncatastrophic mass mortality (NCMM) occurs over time and is strongly influenced by species, age, or gender. In addition to cause of death, sedimentation rate is also important in BB formation. Models of BBs can be made. The CMM drops all individuals in their tracks, therefore, the BB should reflect the living population with respect to species, age, or gender. The NCMM results in monospecific BBs skewed in the direction of the less fit, usually the very young or very old, or towards a specific gender. The NCMM and AM BBs may become more similar the more spread out over time NCMM deaths occur because carcasses are widely scattered requiring hydraulic accumulation, and the greater time allows for more disarticulation and weathering. The CMM and NCMM BB appear to be dominated by social animals. Applying this and the characteristics of mortality patterns to the uppermost Cretaceous Hell Creek Formation indicates that only NCMM and AM BB occur. Furthermore, NCMM BB are rare in the upper third of the Hell Creek. Near the K-T boundary, only AM BB are known. The absence of CMM and NCMM BB appears to be real reflecting a decrease in population levels of some dinosaurs prior to the K-T event. The absence of CMM suggests that the K-T event did not lead to an instantaneous extinction of dinosaurs. Nor was there a protracted die-off due to an asteroid impact winter, because no NCMM BB are known at or near the K-T boundary.

  1. Flash propagation and inferred charge structure relative to radar-observed ice alignment signatures in a small Florida mesoscale convective system

    NASA Astrophysics Data System (ADS)

    Biggerstaff, Michael I.; Zounes, Zackery; Addison Alford, A.; Carrie, Gordon D.; Pilkey, John T.; Uman, Martin A.; Jordan, Douglas M.

    2017-08-01

    A series of vertical cross sections taken through a small mesoscale convective system observed over Florida by the dual-polarimetric SMART radar were combined with VHF radiation source locations from a lightning mapping array (LMA) to examine the lightning channel propagation paths relative to the radar-observed ice alignment signatures associated with regions of negative specific differential phase (KDP). Additionally, charge layers inferred from analysis of LMA sources were related to the ice alignment signature. It was found that intracloud flashes initiated near the upper zero-KDP boundary surrounding the negative KDP region. The zero-KDP boundary also delineated the propagation path of the lightning channel with the negative leaders following the upper boundary and positive leaders following the lower boundary. Very few LMA sources were found in the negative KDP region. We conclude that rapid dual-polarimetric radar observations can diagnose strong electric fields and may help identify surrounding regions of charge.

  2. A Detailed Study of the Drastic Worldwide Climatic Change by the Cretaceous/Paleogene (K/T)-Impact of Chicxulub

    NASA Astrophysics Data System (ADS)

    Preisinger, Anton; Aslanian, Selma; Grass, Fritz; Beigelbeck, Roman; Wernisch, Johann

    2010-05-01

    The impact of Chicxulub (Yucatan, Mexico) was a global event exhibiting a short-time (fallout) and a long-time (boundary clay) sedimentation of the K/T-boundary [1]. The fallout is mainly characterized by iridium, Ni-Cr-rich magnesia-ferrite spinels (K/T-spinels), spherules, as well as shocked quartzes. The amount of the sediments and their distribution depend on the distance from the impact crater. The Cretaceous/Paleogene (K/T) boundaries at three different locations namely Caravaca (Spain), Cerbara (Italy), and Bjala (Bulgaria) have been well analyzed. About 65 million years ago, they were located at the distances from the impact crater ~6000 km, ~7500 km, and ~8800 km, respectively. The boundary clay is characterized by transported minerals like quartzes and feldspars, authigenically formed minerals, as well as biominerals like Mg-calcites and greigites (Fe3S4). The samples were analyzed by scanning X-ray diffractometry (Bruker Analytical X-ray System), scanning electronic microscopy (XL30, ESEM-Philips), neutron activation analyses, Delta13C and Delta18O analyses, and the determination of nannofossils and foraminifera. Owing to the Earth's rotation, the analyzed samples lie along a great circle (crossing the equator under an angle of ~23° ) which covers Chicxulub, Caravaca, Cerbara, and Bjala indicating the existence of only a single impact. The study of this K/T-boundary by means of high resolution scanning X-ray diffractometry in combination with the scanning electron microscopy and neutron activation analyzes revealed the time dependency of the K/T-event in the fallout as well as in the boundary clay. The biomineralization of sulfate-reducing bacteria by greigites provided the duration of the sulfuric acid rain. The reoccurrence of algae is indicated by the appearance of Mg-calcite at the end of the boundary clay. The K/T-spinels were formed on the nucleus of metallic iridium [2]. They were built in the mesosphere (in a height of about 100 km) and grew

  3. Development of a Transient Acoustic Boundary Element Method to Predict the Noise Signature of Swimming Fish

    NASA Astrophysics Data System (ADS)

    Wagenhoffer, Nathan; Moored, Keith; Jaworski, Justin

    2015-11-01

    Animals have evolved flexible wings and fins to efficiently and quietly propel themselves through the air and water. The design of quiet and efficient bio-inspired propulsive concepts requires a rapid, unified computational framework that integrates three essential features: the fluid mechanics, the elastic structural response, and the noise generation. This study focuses on the development, validation, and demonstration of a transient, two-dimensional acoustic boundary element solver accelerated by a fast multipole algorithm. The resulting acoustic solver is used to characterize the acoustic signature produced by a vortex street advecting over a NACA 0012 airfoil, which is representative of vortex-body interactions that occur in schools of swimming fish. Both 2S and 2P canonical vortex streets generated by fish are investigated over the range of Strouhal number 0 . 2 < St < 0 . 4 , and the acoustic signature of the airfoil is quantified. This study provides the first estimate of the noise signature of a school of swimming fish. Lehigh University CORE Grant.

  4. K/T spherules from Haiti and Wyoming: Origin, diagenesis, and similarity to some microtektites

    NASA Technical Reports Server (NTRS)

    Bohor, B. F.; Glass, B. P.; Betterton, W. J.

    1993-01-01

    Spherules with relict glass cores in the K/T boundary bed of Haiti allow for a comparison of these bodies with hollow goyazite shells in the K/T boundary claystone of Wyoming and with younger microtektites of the Ivory Coast strewn field. Samples of the Haitian beds from undisturbed sections at Beloc, as determined by Jehanno et al., contain both hollow shells and relict glass cores rimmed by palagonite that has been partially converted to smectite. These palagonite rims developed from hydration zones formed when hot, splash-form droplets of andesitic impact glass were deposited into water. Mutual collisions between these droplets in the ejecta curtain may have formed point-source stresses on their surfaces. Initiation of hydration would be facilitated at these surface stress points and propagated radially into the glass. The inner surface of these merged hemispherical fronts appears mammillary, which is reflected as scalloping in Haitian relict glass cores.

  5. Crustal structure of the Churchill-Superior boundary zone between 80 and 98 deg W longitude from Magsat anomaly maps and stacked passes

    NASA Technical Reports Server (NTRS)

    Hall, D. H.; Millar, T. W.; Noble, I. A.

    1985-01-01

    A modeling technique using spherical shell elements and equivalent dipole sources has been applied to Magsat signatures at the Churchill-Superior boundary in Manitoba, Ontario, and Ungava. A large satellite magnetic anomaly (12 nT amplitude) on POGO and Magsat maps near the Churchill-Superior boundary was found to be related to the Richmond Gulf aulacogen. The averaged crustal magnetization in the source region is 5.2 A/m. Stacking of the magnetic traces from Magsat passes reveals a magnetic signature (10 nT amplitude) at the Churchill-Superior boundary in an area studied between 80 deg W and 98 deg W. Modeling suggests a steplike thickening of the crust on the Churchill side of the boundary in a layer with a magnetization of 5 A/m. Signatures on aeromagnetic maps are also found in the source areas for both of these satellite anomalies.

  6. Cretaceous-tertiary boundary spherules and Cenozoic microtektites: Similarities and differences

    NASA Technical Reports Server (NTRS)

    Glass, B. P.; Bohor, Bruce F.; Betterton, William J.

    1993-01-01

    Bohor and Betterton pointed out that the K-T spherules can be divided into three groups. Their Type 1 spherules appear to be found in or adjacent to North America, particularly the Western Interior and in Haiti and Mexico. The Type 1 spherules occur in the lower part of the K-T boundary clay below an Ir anomaly. It is the Type 1 spherules which are most similar to microtektites. The discovery of K-T boundary spherules in Beloc, Haiti, and Mimbral, Mexico, with residual tektite-like glass cores supports the hypothesis that the Type 1 spherules are diagenetically altered microtektites. The similarities and differences of the Type 1 K-T boundary spherules to previously described Cenozoic microtektites are discussed.

  7. Silicon Carbide Found in K/T Boundary Layer: Implication for Asteroid Collision with Planet Earth

    NASA Astrophysics Data System (ADS)

    Leung, I. S.; Tsao, C.

    2016-12-01

    An event at the end of the Cretaceous Period 65.5 m.y. ago produced an impact structure 300 km in diameter designated the Chicxulub Crater, located partly on the Yucatan Peninsula and the Caribbian Sea floor. Mass extinction following that event killed 75% of Earth's living species, including dinosaurs. To this date, the killer space object has not been identified, but it was frequently conjectured to be a comet or an asteroid. The goal of our study was to search for evidence which might implicate the culprit. The Chicxulub impact caused extensive wildfires producing Ir-rich dust fallouts in worldwide localities, among which the least contaminated by land-derived sediments may be situated on deep ocean floors. Our study is based on a sample of pelagic clay from the giant piston core LL44-GPC3 taken from the Pacific Plate, north of the Hawaiian Islands (Woods Hole Oceanographic Institution). The 1-cm thick Ir-rich layer was located at a downcore depth of 1055-1056 cm below sea floor. From a 5 cubic cm sample provided by Jim Broda, we found 29 impact glass spherules and 4 silicon carbide (SiC) crystals. SiC has been reported in carbonaceous meteorites. Our findings of SiC in the K/T boundary layer seem to implicate that an asteroid having composition akin to that of carbonaceous chondrites might have been the killer projectile during the Chicxulub event. However, impact by a comet cannot be ruled out, since the mineralogy of cometary dust is as yet unknown.

  8. Human relevance of an in vitro gene signature in HaCaT for skin sensitization.

    PubMed

    van der Veen, Jochem W; Hodemaekers, Henny; Reus, Astrid A; Maas, Wilfred J M; van Loveren, Henk; Ezendam, Janine

    2015-02-01

    The skin sensitizing potential of chemicals is mainly assessed using animal methods, such as the murine local lymph node assay. Recently, an in vitro assay based on a gene expression signature in the HaCaT keratinocyte cell line was proposed as an alternative to these animal methods. Here, the human relevance of this gene signature is assessed through exposure of freshly isolated human skin to the chemical allergens dinitrochlorobenzene (DNCB) and diphenylcyclopropenone (DCP). In human skin, the gene signature shows similar direction of regulation as was previously observed in vitro, suggesting that the molecular processes that drive expression of these genes are similar between the HaCaT cell line and freshly isolated skin, providing evidence for the human relevance of the gene signature. Copyright © 2014 Elsevier Ltd. All rights reserved.

  9. Collaborative Research and Development (CR&D) III Task Order 0077: Fundamental Studies of Plasticity, Interfacial Boundaries and Liquid Metals

    DTIC Science & Technology

    2013-06-01

    Interfacial Boundaries and Liquid Metals Dallas Trinkle Independent Contractor JUNE 2013 Final Report Approved for public...SIGNATURE//_________________ CHRISTOPHER WOODWARD, Project Engineer DANIEL EVANS, Chief Metals Branch Metals Branch Structural ...Materials Division Structural Materials Division ____//SIGNATURE//___________________ ROBERT T. MARSHALL, Deputy Chief

  10. Conformal Solid T-spline Construction from Boundary T-spline Representations

    DTIC Science & Technology

    2012-07-01

    TITLE AND SUBTITLE Conformal Solid T-spline Construction from Boundary T-spline Representations 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM...Zhang’s ONR-YIP award N00014-10-1-0698 and an ONR Grant N00014-08-1-0653. The work of T. J.R. Hughes was supported by ONR Grant N00014-08-1-0992, NSF...GOALI CMI-0700807/0700204, NSF CMMI-1101007 and a SINTEF grant UTA10-000374. References 1. M. Aigner, C. Heinrich, B. Jüttler, E. Pilgerstorfer, B

  11. Improved design of special boundary elements for T-shaped reinforced concrete walls

    NASA Astrophysics Data System (ADS)

    Ji, Xiaodong; Liu, Dan; Qian, Jiaru

    2017-01-01

    This study examines the design provisions of the Chinese GB 50011-2010 code for seismic design of buildings for the special boundary elements of T-shaped reinforced concrete walls and proposes an improved design method. Comparison of the design provisions of the GB 50011-2010 code and those of the American code ACI 318-14 indicates a possible deficiency in the T-shaped wall design provisions in GB 50011-2010. A case study of a typical T-shaped wall designed in accordance with GB 50011-2010 also indicates the insufficient extent of the boundary element at the non-flange end and overly conservative design of the flange end boundary element. Improved designs for special boundary elements of T-shaped walls are developed using a displacement-based method. The proposed design formulas produce a longer boundary element at the non-flange end and a shorter boundary element at the flange end, relative to those of the GB 50011-2010 provisions. Extensive numerical analysis indicates that T-shaped walls designed using the proposed formulas develop inelastic drift of 0.01 for both cases of the flange in compression and in tension.

  12. Trace Elements in Cretaceous-Tertiary Boundary Clay at Gubbio, Italy

    NASA Astrophysics Data System (ADS)

    Ebihara, M.; Miura, T.

    1992-07-01

    In 1980, Alvarez et al. reported high Ir concentrations for the Cretaceous-Tertiary (hereafter, K/T) boundary layer, suggesting an impact of extraterrestrial material as a possible cause of the sudden mass extinction at the end of the Cretaceous period. Since then, high Ir abundances have been reported for K/T layers all over the world. Iridium enrichments were alternatively explained in terms of volcanic eruptions (Officer and Drake, 1982) or sedimentation (Zoller et al, 1982). Thus, abundances of Ir only cannot be critical in explaining the cause of the mass extinctions at the K/T boundary. In contrast to the fairly large number of Ir data for K/T boundary geological materials, only limited data are available for other siderophile elements. Relative abundances of siderophiles must be more informative in considering the causes of extinction, and provide further data on the type of extraterrestrial material of the projectile if siderophile abundances are in favor of an impact as the cause of the mass extinction at the K/T boundary. Thus, we analyzed additional K/T boundary materials for trace elements, including some of the siderophiles. A total of 7 samples collected from the K/T boundary near Gubbio, Italy (three from Bottaccione, four from Contessa) were analyzed. For comparison, we analyzed three additional samples, one from a Cretaceous sediment layer and the remaining two from a Tertiary layer. Four siderophile elements (Ir, Pt, Au, and Pd) were measured by RNAA and more than 25 elements, including 9 lanthanoids, were measured by INAA. The siderophiles listed above and Ni were found to be present in all of the boundary clay samples. They have C1-normalized abundances of 0.02 for Ni, Ir, and Pt, 0.04 for Pd, and Au was exceptionally depleted at 0.005. Both Ni and Ir show fairly small variations in abundances among the clay samples, whereas the other three elements show quite large variations, exceeding error limits. We believe that similar enrichments for

  13. Geochemistry of K/T-boundary Chicxulub ejecta of NE-Mexico

    NASA Astrophysics Data System (ADS)

    Harting, M.; Deutsch, A.; Rickers, K.

    2003-12-01

    Many K/T sections all over the world contain impact spherules supposed related to the Chicxulub event. This study focus on ejecta layers in NE-Mexican profiles. We carried out systematic XRF and synchrotron radiation measurements on such spherules at the HASYLAB and ANKA facilities as well as microprobe analyses (CAMECA SX50). Area scans on tektite-like material of the Bochil section reveal a pronounced zonation in the inner part, dominated by Ba and Sr whereas secondary CaCO3 dominates in the altered margin. The composition of the spherules from the Mesa-Juan Perez section differ significantly from the Beloc (Haiti) and Bochil tektite glasses. At Mesa-Juan Perez, spherules are either extremely rich in Fe and Ca or consist of smectite, some of those carry carbonate inclusions. Yttrium, La and Ce are zoned within the smectite with concentrations below the detection limit and up to 20 æg/g The Ca-rich inclusions are enriched in Y (up to 35 æg/g) and La (18 æg/g) and, compared to the surrounding smectite, also in Ce (up to 34 æg/g). The Ce enrichment in spherules from the Mesa-Juan Perez section indicates impact-melted carbonates of the Yucatan carbonate platform as possible precursor rocks. Recent investigations focus on the chemistry of melt rock samples from the PEMEX wells Yucatan-6 and Chicxulub-1: Their average composition (mean of 250 data points in wt-percent ) is 61.6 for SiO2, 0.16 for TiO2, 18.07 for Al2O3, 0.01 for Cr2O3, 1.98 for Na2O, 1.5 for FeO, 0.05 for MnO, 0.01 for NiO, 0.31 for MgO, 9.14 for K2O, 3.44 for CaO, and 0.01 for SO2. These results are in some cases comparable to the geochemistry of ejecta glasses, e.g. from Beloc (Haiti).

  14. Osmium-Iridium Correlation and Osmium Isotopic Composition in Some Geological Boundaries and Meteorites

    NASA Astrophysics Data System (ADS)

    Liu, Y. Z.; Wang, J. X.; Mao, X. Y.; Chai, C. F.

    1992-07-01

    Since the pioneering study of Alvarez et al. on K/T boundary event, Ir has long been considered to be the main indicator of extraterrestrial materials in boundaries, while little work about Os and its isotopic composition have been done. In this work a sophisticated radiochemical separation procedure together with neutron activation analsis (NAA) method was established for the determination of Os in some geological boundaries (P epsilon/epsilon, K/T, D/C, O/S, P/T). Combined with our early work--determination of Ir abundances [1], the sources of boundary events were deciphered by using the Os/Ir ratios. Simultaneously ^184Os/^190Os ratios in K/T boundaries, as well as inclusions of Allende chondrite and acid-insoluble residues of iron meteorites (Nandan, Jianshi, Longchang) were determined to search for the Os isotopic composition anomalies resulted from the extrasolar components by RNAA. The results show that the Os abundances exhibit a positive correlation with the Ir abundances for overall K/T boundary samples, but only the Os/Ir ratios of K/T boundaries, with the average of 0.98 +- 0.55, are in excellent agreement with 1.01 of the solar system [2], Accordingly, it provides new evidence for an extraterrestrial source of the K/T event. The results of ^184Os/^190Os ratios, with uncertainties of less than 1%, indicate there is no remarkable ^184Os/^190Os ratio anomaly in the K/T boundary samples, which implies the impacting matter may be from the solar system not the extrasolar, while no anomaly exists in the inclusions of Allende chondrite and acid-insoluble residues of iron meteorites, which disagree with the results obtained by Goel [3]. REFERENCES [1] Chai Chifang (1988) Isotopenpraxis 24, pp. 257-272. [2] Anders E. and Grevesse N. (l989) Geochim. Cosmochim. Acta 53, 197-214. [3] Goel P.S.(1987) Proc. Indian Acad. Sci. (Earth Planet. Sci), 96, pp. 81-102.

  15. A new Cretaceous-Tertiary boundary locality in the western powder River basin, Wyoming: biological and geological implications

    USGS Publications Warehouse

    Nichols, D.J.; Brown, J.L.; Attrep, M.; Orth, C.J.

    1992-01-01

    A newly discovered Cretaceous-Tertiary (K-T) boundary locality in the western Powder River basin, Wyoming, is characterized by a palynologically defined extinction horizon, a fern-spore abundance anomaly, a strong iridium anomaly, and shock-metamorphosed quartz grains. Detailed microstratigraphic analyses show that about one third of the palynoflora (mostly angiosperm pollen) disappeared abruptly, placing the K-T boundary within a distinctive, 1- to 2-cm-thick claystone layer. Shocked quartz grains are concentrated at the top of this layer, and although fern-spore and iridium concentrations are high in this layer, they reach their maximum concentrations in a 2-cm-thick carbonaceous claystone that overlies the boundary claystone layer. The evidence supports the theory that the K-T boundary event was associated with the impact of an extraterrestrial body or bodies. Palynological analyses of samples from the K-T boundary interval document extensive changes in the flora that resulted from the boundary event. The palynologically and geochemically defined K-T boundary provides a unique time-line of use in regional basin analysis. ?? 1992.

  16. Commensurate antiferromagnetic excitations as a signature of the pseudogap in the tetragonal high-T c cuprate HgBa 2CuO 4+δ

    DOE PAGES

    Chan, M. K.; Dorow, C. J.; Mangin-Thro, L.; ...

    2016-03-04

    We report that antiferromagnetic correlations have been argued to be the cause of the d-wave superconductivity and the pseudogap phenomena exhibited by the cuprates. Although the antiferromagnetic response in the pseudogap state has been reported for a number of compounds, there exists no information for structurally simple HgBa 2CuO 4+δ. We report neutron-scattering results for HgBa 2CuO 4+δ (superconducting transition temperature T c≈71 K, pseudogap temperature T*≈305 K) that demonstrate the absence of the two most prominent features of the magnetic excitation spectrum of the cuprates: the X-shaped ‘hourglass’ response and the resonance mode in the superconducting state. Instead, themore » response is Y-shaped, gapped and significantly enhanced below T*, and hence a prominent signature of the pseudogap state.« less

  17. Real Traceable Signatures

    NASA Astrophysics Data System (ADS)

    Chow, Sherman S. M.

    Traceable signature scheme extends a group signature scheme with an enhanced anonymity management mechanism. The group manager can compute a tracing trapdoor which enables anyone to test if a signature is signed by a given misbehaving user, while the only way to do so for group signatures requires revealing the signer of all signatures. Nevertheless, it is not tracing in a strict sense. For all existing schemes, T tracing agents need to recollect all N' signatures ever produced and perform RN' “checks” for R revoked users. This involves a high volume of transfer and computations. Increasing T increases the degree of parallelism for tracing but also the probability of “missing” some signatures in case some of the agents are dishonest.

  18. New links between the Chicxulub impact structure and the Cretaceous/Tertiary boundary

    USGS Publications Warehouse

    Sharpton, V.L.; Dalrymple, G.B.; Marin, L.E.; Ryder, G.; Schuraytz, B.C.; Urrutia-Fucugauchi, J.

    1992-01-01

    THE 200-km-diameter Chicxulub structure1-3 in northern Yucatan, Mexico has emerged as the prime candidate for the Cretaceous/Tertiary (K/T) boundary impact crater3-6. Concentric geophysical anomalies associated with enigmatic occurrences of Upper Cretaceous breccias and andesitic rocks led Penfield and Camargo1 to suspect that this structure was a buried impact basin. More recently, the discovery of shocked quartz grains in a Chicxulub breccia3, and chemical similarities between Chicxulub rocks and K/T tektite-like glasses3-6 have been advanced as evidence that the Chicxulub structure is a K/T impact site. Here we present evidence from core samples that Chicxulub is indeed a K/T source crater, and can apparently account for all the evidence of impact distributed globally at the K/T boundary without the need for simultaneous multiple impacts or comet showers. Shocked breccia clasts found in the cores are similar to shocked lithic fragments found worldwide in the K/T boundary ejecta layer7,8. The Chicxulub melt rocks that we studied contain anomalously high levels of iridium (up to 13.5 parts per 109), also consistent with the indium-enriched K/T boundary layer9. Our best estimate of the crystallization age of these melt rocks, as determined by 40Ar/39Ar analyses, is 65.2??0.4 (1??) Myr, in good agreement with the mean plateau age of 64.98 ?? 0.05 Myr recently reported10. Furthermore, these melt rocks acquired a remanent magnetization indicating that they cooled during an episode of reversed geomagnetic polarity. The only such episode consistent with 40Ar/39Ar constraints is chron 29R, which includes the K/T boundary.

  19. Neural signature of tDCS, tPCS and their combination: Comparing the effects on neural plasticity

    PubMed Central

    Thibaut, Aurore; Russo, Cristina; Morales-Quezada, Leon; Hurtado-Puerto, Aura; Deitos, Alícia; Freedman, Steven; Carvalho, Sandra; Fregni, Felipe

    2017-01-01

    Transcranial pulsed current stimulation (tPCS) and transcranial direct current stimulation (tDCS) are two noninvasive neuromodulatory brain stimulation techniques whose effects on human brain and behavior have been studied individually. In the present study we aimed to quantify the effects of tDCS and tPCS, individually and in combination, on cortical activity, sensitivity and pain-related assessments in healthy individuals in order to understand their neurophysiological mechanisms and potential applications in clinical populations. A total of 48 healthy individuals participated in this randomized double blind sham controlled study. Participants were randomized to receive a single stimulation session of either: active or sham tPCS and active or sham tDCS. Quantitative electroencephalography (qEEG), sensitivity and pain assessments were used before and after each stimulation session. We observed that tPCS had a higher effect on power, as compared to tDCS, in several bandwidths on various cortical regions: the theta band in the parietal region (p = 0.021), the alpha band in the temporal (p = 0.009), parietal (p = 0.0063), and occipital (p < 0.0001) regions. We found that the combination of tPCS and tDCS significantly decreased power in the low beta bandwidth of the frontal (p = 0.0006), central (p = 0.0001), and occipital (p = 0.0003) regions, when compared to sham stimulation. Additionally, tDCS significantly increased power in high beta over the temporal (p = 0.0015) and parietal (p = 0.0007) regions, as compared to sham. We found no effect on sensitivity or pain-related assessments. We concluded that tPCS and tDCS have different neurophysiological mechanisms, elicit distinct signatures, and that the combination of the two leads to no effect or a decrease on qEEG power. Further studies are required to examine the effects of these techniques on clinical populations in which EEG signatures have been found altered. PMID:27765610

  20. Radial k-t SPIRiT: autocalibrated parallel imaging for generalized phase-contrast MRI.

    PubMed

    Santelli, Claudio; Schaeffter, Tobias; Kozerke, Sebastian

    2014-11-01

    To extend SPIRiT to additionally exploit temporal correlations for highly accelerated generalized phase-contrast MRI and to compare the performance of the proposed radial k-t SPIRiT method relative to frame-by-frame SPIRiT and radial k-t GRAPPA reconstruction for velocity and turbulence mapping in the aortic arch. Free-breathing navigator-gated two-dimensional radial cine imaging with three-directional multi-point velocity encoding was implemented and fully sampled data were obtained in the aortic arch of healthy volunteers. Velocities were encoded with three different first gradient moments per axis to permit quantification of mean velocity and turbulent kinetic energy. Velocity and turbulent kinetic energy maps from up to 14-fold undersampled data were compared for k-t SPIRiT, frame-by-frame SPIRiT, and k-t GRAPPA relative to the fully sampled reference. Using k-t SPIRiT, improvements in magnitude and velocity reconstruction accuracy were found. Temporally resolved magnitude profiles revealed a reduction in spatial blurring with k-t SPIRiT compared with frame-by-frame SPIRiT and k-t GRAPPA for all velocity encodings, leading to improved estimates of turbulent kinetic energy. k-t SPIRiT offers improved reconstruction accuracy at high radial undersampling factors and hence facilitates the use of generalized phase-contrast MRI for routine use. Copyright © 2013 Wiley Periodicals, Inc.

  1. eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

    PubMed

    Clarke, Daniel J B; Kuleshov, Maxim V; Schilder, Brian M; Torre, Denis; Duffy, Mary E; Keenan, Alexandra B; Lachmann, Alexander; Feldmann, Axel S; Gundersen, Gregory W; Silverstein, Moshe C; Wang, Zichen; Ma'ayan, Avi

    2018-05-25

    While gene expression data at the mRNA level can be globally and accurately measured, profiling the activity of cell signaling pathways is currently much more difficult. eXpression2Kinases (X2K) computationally predicts involvement of upstream cell signaling pathways, given a signature of differentially expressed genes. X2K first computes enrichment for transcription factors likely to regulate the expression of the differentially expressed genes. The next step of X2K connects these enriched transcription factors through known protein-protein interactions (PPIs) to construct a subnetwork. The final step performs kinase enrichment analysis on the members of the subnetwork. X2K Web is a new implementation of the original eXpression2Kinases algorithm with important enhancements. X2K Web includes many new transcription factor and kinase libraries, and PPI networks. For demonstration, thousands of gene expression signatures induced by kinase inhibitors, applied to six breast cancer cell lines, are provided for fetching directly into X2K Web. The results are displayed as interactive downloadable vector graphic network images and bar graphs. Benchmarking various settings via random permutations enabled the identification of an optimal set of parameters to be used as the default settings in X2K Web. X2K Web is freely available from http://X2K.cloud.

  2. Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients.

    PubMed

    Lam, Larry; Chin, Lydia; Halder, Ramesh C; Sagong, Bien; Famenini, Sam; Sayre, James; Montoya, Dennis; Rubbi, Liudmilla; Pellegrini, Matteo; Fiala, Milan

    2016-10-01

    We have investigated transcriptional and epigenetic differences in peripheral blood mononuclear cells (PBMCs) of monozygotic female twins discordant in the diagnosis of amyotrophic lateral sclerosis (ALS). Exploring DNA methylation differences by reduced representation bisulfite sequencing (RRBS), we determined that, over time, the ALS twin developed higher abundances of the CD14 macrophages and lower abundances of T cells compared to the non-ALS twin. Higher macrophage signature in the ALS twin was also shown by RNA sequencing (RNA-seq). Moreover, the twins differed in the methylome at loci near several genes, including EGFR and TNFRSF11A, and in the pathways related to the tretinoin and H3K27me3 markers. We also tested cytokine production by PBMCs. The ALS twin's PBMCs spontaneously produced IL-6 and TNF-α, whereas PBMCs of the healthy twin produced these cytokines only when stimulated by superoxide dismutase (SOD)-1. These results and flow cytometric detection of CD45 and CD127 suggest the presence of memory T cells in both twins, but effector T cells only in the ALS twin. The ALS twin's PBMC supernatants, but not the healthy twin's, were toxic to rat cortical neurons, and this toxicity was strongly inhibited by an IL-6 receptor antibody (tocilizumab) and less well by TNF-α and IL-1β antibodies. The putative neurotoxicity of IL-6 and TNF-α is in agreement with a high expression of these cytokines on infiltrating macrophages in the ALS spinal cord. We hypothesize that higher macrophage abundance and increased neurotoxic cytokines have a fundamental role in the phenotype and treatment of certain individuals with ALS.-Lam, L., Chin, L., Halder, R. C., Sagong, B., Famenini, S., Sayre, J., Montoya, D., Rubbi L., Pellegrini, M., Fiala, M. Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients. © FASEB.

  3. Stable isotope evidence for gradual environmental changes and species survivorship across the Cretaceous/Tertiary Boundary

    NASA Astrophysics Data System (ADS)

    Barrera, Enriqueta; Keller, Gerta

    1990-12-01

    High-resolution δ13C and δ18O records have been generated from analyses of the planktonic foraminiferal species Heterohelix globulosa and the benthonic foraminiferal taxon Lenticulina spp from 3 m of a cored section spanning the Cretaceous/Tertiary (K/T) boundary at Brazos River, Texas. These are the first stable isotope records across the K/T boundary based on monospecific and monogeneric foraminiferal samples. They show a gradual decrease in δ13C values of about 2.5 permil beginning at the K/T boundary, as defined by the first appearance of Tertiary planktonic foraminifera, and continuing 17-20 cm above the boundary, approximately 40,000 years later. Gradual 13C depletion contrasts with the sudden δ13C drop at the K/T boundary observed in many deep-sea sections. The surface-to-bottom δ13C gradient decreased to less than zero approximately 25,000-30,000 years after the K/T boundary and remained negative for at least the next 140,000 years. Concomitant with change in δ13C values is a gradual decrease of about 2.5 permil in δ18C values which has not been observed at other localities. This 18O depletion suggests changes in temperature and/or salinity in the earliest Paleocene Gulf of Mexico. No extinction of foraminiferal species is associated with the K/T boundary or the onset of 18O and 13C depletions. Instead, two phases of Cretaceous species extinctions occur. One extinction phase is below the K/T boundary and below the tsunami bed of Bourgeois et al. [1988] and may be linked to sea level regression and environmental perturbations. The second extinction phase coincides with the minimum in δ13C and δ18O values in the Early Danian (Zone P0/Pla) and appears directly related to environmental changes reflected in the isotopic record. H. globulosa, which is commonly present in Maastrichtian and Danian sediments, exhibits significantly lower 18O/16O and 13C/12C ratios in Tertiary sediments relative to specimens from Maastrichtian sediments, demonstrating the

  4. Effects of K and Ca doping on twin boundary energy of cupperate superconductors

    NASA Astrophysics Data System (ADS)

    Khoshnevisan, Bahram; Mohammadi, Mahnaz

    2016-04-01

    Ab-initio calculations under GGA approximation have been employed to find out the effect Ba substitution by K and Ca on the structural and electronic properties twined and untwined YBCO system. In this regard, the twin boundary energy, γ, and impact of the substitution on the boundary's charge distribution have been of special consideration. Our results show that despite the structural changes the presence of K (Ca) modifies substantially density of levels at the Fermi level, which could be responsible for empirical reports of decreasing the critical temperature (Tc) by increasing the K(Ca) content. Although, the K doping reduces the γ value in YBa2-xKxCu3O7 system, after calcium doping it remains more or less unchanged. In addition, reduction of the carrier density occurs at twin boundary in CuO2 layer for the substituted system with respect to the untwined YBCO system. Our results would be noticeable in conjunction with the experimentally reported twinned and alkali substituted superconductive properties of the YBCO samples.

  5. Mapping and energization in the magnetotail. I - Magnetospheric boundaries

    NASA Technical Reports Server (NTRS)

    Kaufmann, Richard L.; Larson, Douglas J.; Beidl, Paul; Lu, Chen

    1993-01-01

    The definition and mapping of the principal observed magnetospheric boundaries between the ionospheric and the equatorial plane are considered. All field tracing is done using the Tsyganenko (1989) or T89 magnetospheric model. Some of the model limitations are described. Particular attention is given to a search for signatures of the magnetotail subregions that may be observable by low- or middle-altitude satellites.

  6. Ecosystems response and restitution time across the K/Pg boundary transition at high-latitudes, Southern Hemisphere, New Zealand - a palynological approach

    NASA Astrophysics Data System (ADS)

    Willumsen, Pi; Vajda, Vivi

    2010-05-01

    terrestrial record e.g. "Fern-spike" interval (Vajda et al. 2001; Vajda and Raine 2003; Vajda and McLoughlin 2004). Interestingly, the dinocyst Trithyrodinium evittii has first occurrence immediately above the K/Pg boundary horizon in the southwest Pacific (Helby et al., 1987; Wilson 1987, 1988; Williams et al. 2004; Willumsen 2000, 2006). This dinocyst pattern is interpreted to reflect an invasion of this species into the southwest Pacific, in the aftermath of the Chicxulub impact. In the New Zealand sections, two earliest Paleocene intervals with dominance of T. evittii are separated by an acme interval of Paleoperidinium pyrophorum (Willumsen 2000, 2006; Willumsen et al., 2004a; 2004b). The sudden acme of P. pyrophorum ca. 0.5 Ma after the K/Pg boundary event is interpreted to reflect a regional cold water pulse taking place after a period with relatively warmer sea-surface e.g. T. evittii dominated dinocyst assemblages. A second period with warm-surface water is observed c. 0.8-1.5 Ma after the event. The end of the main marine recovery period is marked by a gradual arrival of new suite of dinocyst species and oligotrophic conditions. The timing of these early Paleocene events in New Zealand aligns well with D'Hondt et al. (1998, 2005) who propose that the marine ecosystem was radically altered due to the K/Pg boundary event and that the post-K/Pg boundary is divided into several recovery steps before the open-ocean ecosystem was fully recovered c. 3 Ma after the event.

  7. A modern ionotropic glutamate receptor with a K(+) selectivity signature sequence.

    PubMed

    Janovjak, H; Sandoz, G; Isacoff, E Y

    2011-01-01

    Glutamate is the major excitatory neurotransmitter in the mammalian central nervous system and gates non-selective cation channels. The origins of glutamate receptors are not well understood as they differ structurally and functionally from simple bacterial ligand-gated ion channels. Here we report the discovery of an ionotropic glutamate receptor that combines the typical eukaryotic domain architecture with the 'TXVGYG' signature sequence of the selectivity filter found in K(+) channels. This receptor exhibits functional properties intermediate between bacterial and eukaryotic glutamate-gated ion channels, suggesting a link in the evolution of ionotropic glutamate receptors.

  8. Terrestrial ecosystem collapse associated to the K-Pg boundary and dinosaur extinction: palynological evidences

    NASA Astrophysics Data System (ADS)

    Bercovici, A.; Vajda, V.; Lyson, T. R.; Chester, S. G. B.; Sargis, E. J.; Pearson, D. A.; Joyce, W. G.

    2012-04-01

    We report here the discovery of the stratigraphically youngest in situ dinosaur specimen. This ceratopsian brow horn was found in southeastern Montana, in the Western Interior of the United States in a poorly rooted, silty mudstone floodplain deposit and only 13 centimeters below the palynologically defined K-Pg boundary. The boundary is identified using three criteria: 1) substantial decrease in diversity and abundance of Cretaceous pollen and spore taxa that completely disappear from the palynological record a few meters above the boundary, 2) the presence of a "fern spike", and 3) palynostratigraphical correlation to a nearby section where primary extraterrestrial impact markers are present (e.g., iridium anomaly, spherules and shocked quartz). The palynological record in the rock sequence immediately following the K-Pg boundary consistently indicates a sudden and major loss of the Cretaceous components across the North American record. During this rapid decline, the palynological assemblages are dominated by freshwater ferns (Azolla) and algae (usually Pediastrum sp. and Penetetrapites sp.) indicating generalized flooding in the area. The onset of the Paleocene sedimentation is subsequently announced by the presence of variegated beds, multiple lignite seams and small scale meandering river systems, starting with palynological associations that attest for reworking and erosion. The destabilization of terrestrial ecosystems is coincident with the markers of the K-Pg boundary, supporting a catastrophic event taking place over a very short duration. The in situ ceratopsian brow horn demonstrates that a gap devoid of non-avian dinosaur fossils in the last meters of the Cretaceous is artificial and thus inconsistent with the hypothesis that non-avian dinosaurs were extinct prior to the K-Pg boundary asteroid impact event.

  9. Is there evidence for Cretaceous-Tertiary boundary-age deep-water deposits in the Caribbean and Gulf of Mexico?

    NASA Astrophysics Data System (ADS)

    Keller, G.; MacLeod, N.; Lyons, J. B.; Officer, C. B.

    1993-09-01

    Over most of the Gulf of Mexico and Caribbean a hiatus is present between the lower upper Maastrichtian and lowermost Tertiary deposits; sedimentation resumed ˜200 ka (upper zone Pla) after the K-T boundary. Current-bedded volcaniclastic sedimentary rocks at Deep Sea Drilling Project (DSDP) Sites 536 and 540, which were previously interpreted as impact-generated megawave deposits of K-T boundary age, are biostratigraphically of pre-K-T boundary age and probably represent turbidite or gravity-How deposits. The top 10 to 20 cm of this deposit at Site 536 contains very rare Micula prinsii, the uppermost Maastrichtian index taxon, as well as low values of Ir (0.6 pbb) and rare Ni-rich spinels. These indicate possible reworking of sediments of K-T boundary age at the hiatus. Absence of continuous sediment accumulation across the K-T boundary in the 16 Gulf of Mexico and Caribbean sections examined prevents their providing evidence of impact-generated megawave deposits in this region. Our study indicates that the most complete trans-K-T stratigraphic records may be found in onshore marine sections of Mexico, Cuba, and Haiti. The stratigraphic records of these areas should be investigated further for evidence of impact deposits.

  10. Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients

    PubMed Central

    Lam, Larry; Chin, Lydia; Halder, Ramesh C.; Sagong, Bien; Famenini, Sam; Sayre, James; Montoya, Dennis; Rubbi, Liudmilla; Pellegrini, Matteo; Fiala, Milan

    2016-01-01

    We have investigated transcriptional and epigenetic differences in peripheral blood mononuclear cells (PBMCs) of monozygotic female twins discordant in the diagnosis of amyotrophic lateral sclerosis (ALS). Exploring DNA methylation differences by reduced representation bisulfite sequencing (RRBS), we determined that, over time, the ALS twin developed higher abundances of the CD14 macrophages and lower abundances of T cells compared to the non-ALS twin. Higher macrophage signature in the ALS twin was also shown by RNA sequencing (RNA-seq). Moreover, the twins differed in the methylome at loci near several genes, including EGFR and TNFRSF11A, and in the pathways related to the tretinoin and H3K27me3 markers. We also tested cytokine production by PBMCs. The ALS twin’s PBMCs spontaneously produced IL-6 and TNF-α, whereas PBMCs of the healthy twin produced these cytokines only when stimulated by superoxide dismutase (SOD)-1. These results and flow cytometric detection of CD45 and CD127 suggest the presence of memory T cells in both twins, but effector T cells only in the ALS twin. The ALS twin’s PBMC supernatants, but not the healthy twin’s, were toxic to rat cortical neurons, and this toxicity was strongly inhibited by an IL-6 receptor antibody (tocilizumab) and less well by TNF-α and IL-1β antibodies. The putative neurotoxicity of IL-6 and TNF-α is in agreement with a high expression of these cytokines on infiltrating macrophages in the ALS spinal cord. We hypothesize that higher macrophage abundance and increased neurotoxic cytokines have a fundamental role in the phenotype and treatment of certain individuals with ALS.—Lam, L., Chin, L., Halder, R. C., Sagong, B., Famenini, S., Sayre, J., Montoya, D., Rubbi L., Pellegrini, M., Fiala, M. Epigenetic changes in T-cell and monocyte signatures and production of neurotoxic cytokines in ALS patients. PMID:27368295

  11. Building the School Attendance Boundary Information System (SABINS): Collecting, Processing, and Modeling K to 12 Educational Geography

    PubMed Central

    Saporito, Salvatore; Van Riper, David; Wakchaure, Ashwini

    2017-01-01

    The School Attendance Boundary Information System is a social science data infrastructure project that assembles, processes, and distributes spatial data delineating K through 12th grade school attendance boundaries for thousands of school districts in U.S. Although geography is a fundamental organizing feature of K to 12 education, until now school attendance boundary data have not been made readily available on a massive basis and in an easy-to-use format. The School Attendance Boundary Information System removes these barriers by linking spatial data delineating school attendance boundaries with tabular data describing the demographic characteristics of populations living within those boundaries. This paper explains why a comprehensive GIS database of K through 12 school attendance boundaries is valuable, how original spatial information delineating school attendance boundaries is collected from local agencies, and techniques for modeling and storing the data so they provide maximum flexibility to the user community. An important goal of this paper is to share the techniques used to assemble the SABINS database so that local and state agencies apply a standard set of procedures and models as they gather data for their regions. PMID:29151773

  12. Building the School Attendance Boundary Information System (SABINS): Collecting, Processing, and Modeling K to 12 Educational Geography.

    PubMed

    Saporito, Salvatore; Van Riper, David; Wakchaure, Ashwini

    2013-01-01

    The School Attendance Boundary Information System is a social science data infrastructure project that assembles, processes, and distributes spatial data delineating K through 12 th grade school attendance boundaries for thousands of school districts in U.S. Although geography is a fundamental organizing feature of K to 12 education, until now school attendance boundary data have not been made readily available on a massive basis and in an easy-to-use format. The School Attendance Boundary Information System removes these barriers by linking spatial data delineating school attendance boundaries with tabular data describing the demographic characteristics of populations living within those boundaries. This paper explains why a comprehensive GIS database of K through 12 school attendance boundaries is valuable, how original spatial information delineating school attendance boundaries is collected from local agencies, and techniques for modeling and storing the data so they provide maximum flexibility to the user community. An important goal of this paper is to share the techniques used to assemble the SABINS database so that local and state agencies apply a standard set of procedures and models as they gather data for their regions.

  13. Searching for new scalar bosons via triple-top signature in cg → tS0 → tt t bar

    NASA Astrophysics Data System (ADS)

    Kohda, Masaya; Modak, Tanmoy; Hou, Wei-Shu

    2018-01-01

    The alignment phenomenon, that the 125 GeV h0 boson so resembles the Standard Model Higgs boson, can be understood in a two Higgs doublet model without discrete symmetry. New Yukawa couplings ρtt and ρtc offer new avenues to discover the extra scalar H0 and pseudoscalar A0. We propose to search for cg → tH0, tA0 followed by H0, A0 → t t bar , t c bar , where same-sign dileptons could be the harbinger, with triple-top, in the signature of three leptons plus three b-jets, as confirmation. Discovery could touch upon the origin of baryon asymmetry of the Universe.

  14. DNA Methylation Signature of Childhood Chronic Physical Aggression in T Cells of Both Men and Women

    PubMed Central

    Guillemin, Claire; Provençal, Nadine; Suderman, Matthew; Côté, Sylvana M.; Vitaro, Frank; Hallett, Michael; Tremblay, Richard E.; Szyf, Moshe

    2014-01-01

    Background High frequency of physical aggression is the central feature of severe conduct disorder and is associated with a wide range of social, mental and physical health problems. We have previously tested the hypothesis that differential DNA methylation signatures in peripheral T cells are associated with a chronic aggression trajectory in males. Despite the fact that sex differences appear to play a pivotal role in determining the development, magnitude and frequency of aggression, most of previous studies focused on males, so little is known about female chronic physical aggression. We therefore tested here whether or not there is a signature of physical aggression in female DNA methylation and, if there is, how it relates to the signature observed in males. Methodology/Principal Findings Methylation profiles were created using the method of methylated DNA immunoprecipitation (MeDIP) followed by microarray hybridization and statistical and bioinformatic analyses on T cell DNA obtained from adult women who were found to be on a chronic physical aggression trajectory (CPA) between 6 and 12 years of age compared to women who followed a normal physical aggression trajectory. We confirmed the existence of a well-defined, genome-wide signature of DNA methylation associated with chronic physical aggression in the peripheral T cells of adult females that includes many of the genes similarly associated with physical aggression in the same cell types of adult males. Conclusions This study in a small number of women presents preliminary evidence for a genome-wide variation in promoter DNA methylation that associates with CPA in women that warrant larger studies for further verification. A significant proportion of these associations were previously observed in men with CPA supporting the hypothesis that the epigenetic signature of early life aggression in females is composed of a component specific to females and another common to both males and females. PMID:24475181

  15. The chromatin accessibility signature of human immune aging stems from CD8+ T cells.

    PubMed

    Ucar, Duygu; Márquez, Eladio J; Chung, Cheng-Han; Marches, Radu; Rossi, Robert J; Uyar, Asli; Wu, Te-Chia; George, Joshy; Stitzel, Michael L; Palucka, A Karolina; Kuchel, George A; Banchereau, Jacques

    2017-10-02

    Aging is linked to deficiencies in immune responses and increased systemic inflammation. To unravel the regulatory programs behind these changes, we applied systems immunology approaches and profiled chromatin accessibility and the transcriptome in PBMCs and purified monocytes, B cells, and T cells. Analysis of samples from 77 young and elderly donors revealed a novel and robust aging signature in PBMCs, with simultaneous systematic chromatin closing at promoters and enhancers associated with T cell signaling and a potentially stochastic chromatin opening mostly found at quiescent and repressed sites. Combined analyses of chromatin accessibility and the transcriptome uncovered immune molecules activated/inactivated with aging and identified the silencing of the IL7R gene and the IL-7 signaling pathway genes as potential biomarkers. This signature is borne by memory CD8 + T cells, which exhibited an aging-related loss in binding of NF-κB and STAT factors. Thus, our study provides a unique and comprehensive approach to identifying candidate biomarkers and provides mechanistic insights into aging-associated immunodeficiency. © 2017 Ucar et al.

  16. The chromatin accessibility signature of human immune aging stems from CD8+ T cells

    PubMed Central

    Marches, Radu; Rossi, Robert J.; Uyar, Asli; Wu, Te-Chia; Stitzel, Michael L.; Palucka, A. Karolina

    2017-01-01

    Aging is linked to deficiencies in immune responses and increased systemic inflammation. To unravel the regulatory programs behind these changes, we applied systems immunology approaches and profiled chromatin accessibility and the transcriptome in PBMCs and purified monocytes, B cells, and T cells. Analysis of samples from 77 young and elderly donors revealed a novel and robust aging signature in PBMCs, with simultaneous systematic chromatin closing at promoters and enhancers associated with T cell signaling and a potentially stochastic chromatin opening mostly found at quiescent and repressed sites. Combined analyses of chromatin accessibility and the transcriptome uncovered immune molecules activated/inactivated with aging and identified the silencing of the IL7R gene and the IL-7 signaling pathway genes as potential biomarkers. This signature is borne by memory CD8+ T cells, which exhibited an aging-related loss in binding of NF-κB and STAT factors. Thus, our study provides a unique and comprehensive approach to identifying candidate biomarkers and provides mechanistic insights into aging-associated immunodeficiency. PMID:28904110

  17. New Analysis Of The Baptistina Asteroid Family: Implications For Its Link With The K/t Impactor

    NASA Astrophysics Data System (ADS)

    Delbo, Marco; Nesvorny, D.; Licandro, J.; Ali-Lagoa, V.

    2012-10-01

    The Baptistina Asteroid Family (BAF) is the result of the breakup of an asteroid roughly 100 million years ago. This family is the source of meteoroids and near-Earth asteroids and likely caused an asteroid shower of impactors on our Earth. Bottke et al. (2007) proposed a link between the BAF and the K/T impactor, based on the favorable timing, large probability of a terrestrial impact of one 10-km BAF asteroid, and the Sloan colors of the BAF members, indicating that the BAF may have composition consistent with the K/T impactor (CM2-type carbonaceous meteorite, as inferred from chromium studies at different K/T boundary sites; Alvarez et al. 1980, Kring et al. 2007). The relationship between the BAF and K/T impactor is now controversial. Masiero et al. (2011) found that the albedo of BAF family members is 0.15, significantly higher than expected for a dark carbonaceous parent body. Also, Reddy et al. (2011) reported the spectroscopic observations of (298) Baptistina and objects in the general neighborhood of the BAF, and suggested the BAF includes a mixture of spectroscopic types that is not very different from the background (mostly S-type asteroids in the background Flora family). Unfortunately, Reddy et al. observed only the large asteroids near (298) Baptistina, and not the K/T-impactor-size BAF members with D 10 km. Using WISE albedos, Sloan colors and newly obtained spectroscopic observations of BAF members, here we show that (1) the large objects in the BAF are mostly BAF interlopers, (2) that BAF has an homogeneous composition consistent with an X-type class. We discuss the implications of the link between the BAF and the K/T impactor.

  18. A high resolution, one million year record of extraterrestrial 3Helium from the Shatsky Rise (site 1209) following the K/T impact

    NASA Astrophysics Data System (ADS)

    Bhattacharya, A.; Mukhopadhyay, S.; Hull, P. M.; Norris, R. D.

    2010-12-01

    Located in the North Pacific Ocean, site 1209 on the Shatsky rise offers one of the best-preserved sections for studying biological, oceanographic and climatic events in the aftermath of the K-T impact at ~65 Ma. At this site, the first 450 kyrs after the boundary is represented by an extended carbonate section [1]. The expanded section, also known as the ‘strange interval’ [1] is in direct contrast to sites in the Atlantic and Indian Ocean that have low carbonate deposition during this interval. The strange interval is important for evaluating the immediate changes in climate, ocean circulation, and evolutionary dynamics that accompanied K-T impact in the Pacific Ocean. Here we present measurements of extraterrestrial 3He at site 1209 for the first one million year following the K-T impact event at a resolution of 2.5 cm. Our goal is to better constrain the timescale of climatic and biotic events during this interval of time. Accumulation rates of interplanetary dust particles (IDPs), as traced by extraterrestrial 3He [2], provide a tool with which to investigate sedimentation rates at high resolution. Prior work has shown that the accretion rate of IDPs across the K-T boundary is constant [2], allowing us to invert the extraterrestrial 3He flux for instantaneous sedimentation rates. Sedimentation rates derived from extraterrestrial 3He for the first 1.91 meters i.e. 261.60-259.72 revised composite meters depth (rmcd) following the K-T impact are on an average 0.48 cm/kyr- a factor of 1.6 lower than previously suggested [1]. For a brief period, between 259.69-259.44 rmcd after the K/T boundary, 3He-based sedimentation rates increase sharply to 2.88cm/kyr—a factor of 4.23 higher than has been reported for the same time interval [1]. The short lived increase in sedimentation rate may be explained by higher productivity and/or better carbonate preservation through a deepening lysocline. The 3He based sedimentation rates indicate that the duration of the

  19. Tektites in cretaceous-tertiary boundary rocks on Haiti and their bearing on the Alvarez impact extinction hypothesis

    NASA Astrophysics Data System (ADS)

    Izett, G. A.

    1991-11-01

    Observational and geochemical data for glass objects recently discovered, by Izett et al. (1990), in K-T boundary rocks on the island of Haiti are presented. The presence of tektites, which are of terrestrial impact origin, in the same bed with a Pt-metal abundance anomaly and shocked mineral grains enormously strengthens the impact component of the Alvarez K-T impact extinction hypothesis. Shocked quartz grains in samples of the Haitian K-T boundary marker bed are about the same size as those at the K-T boundary sites in western North America. Petrographic observations indicate that the K-T marker bed on Haiti is not a primary air fall unit composed entirely of impact ejecta. It contains a small volcanogenic component of locally derived material admixed with the impact ejecta during deposition on the seafloor. The major and trace element composition of the Haitian tektites, in particular, the high Rb and REE content, suggests that the target material melted during the K-T impact was sedimentary with an average composition of andesite, not mafic or ultramafic oceanic crust.

  20. Evidence for a single impact at the Cretaceous-Tertiary boundary from trace elements

    NASA Technical Reports Server (NTRS)

    Gilmour, Iain; Anders, Edward

    1988-01-01

    Not only meteoritic elements (Ir, Ni, Au, Pt metals), but also some patently non-meteoritic elements (As, Sb) are enriched at the K-T boundary. Eight enriched elements at 7 K-T sites were compared and it was found that: All have fairly constant proportions to Ir and Kilauea (invoked as an example of a volcanic source of Ir by opponents of the impact theory) has too little of 7 of these 8 elements to account for the boundary enrichments. The distribution of trace elements at the K-T boundary was reexamined using data from 11 sites for which comprehensive are available. The meteoritic component can be assessed by first normalizing the data to Ir, the most obviously extraterrestrial element, and then to Cl chondrites. The double normalization reduces the concentration range from 11 decades to 5 and also facilitates the identification of meteoritic elements. At sites where trace elements were analyzed in sub-divided samples of boundary clay, namely, Caravaca (SP), Stevns Klint (DK), Flaxbourne River (NZ) and Woodside Creek (NZ), Sb, As and Zn are well correlated with Ir across the boundary implying a common deposition mechanism. Elemental carbon is also enriched by up to 10,000 x in boundary clay from 5 K-T sides and is correlated with Ir across the boundary at Woodside Creek. While biomass would appear to be the primary fuel source for this carbon a contribution from a fossil fuel source may be necessary in order to account for the observed C abundance.

  1. The Effects of Selected Modelling Parameters on the Computed Optical Frequency Signatures of Naval Platforms

    DTIC Science & Technology

    2009-04-01

    Contrast signature plots for the simple wireframe model with user-defined thermal boundary conditions and an exhaust plume ...boundary conditions but no exhaust plume ................................................................................. 25 A.3. Contrast signature...plots for the simple wireframe model with no user-defined thermal boundary conditions or exhaust plume

  2. Signatures of filamentary superconductivity in antiferromagnetic BaFe 2As 2 single crystals

    DOE PAGES

    Moseley, D. A.; Yates, K. A.; Branford, W. R.; ...

    2015-08-24

    In this paper, we present ac susceptibility and magnetotransport measurements on aged single crystals of the ferropnictide parent compound, BaFe 2As 2 with a paramagnetic-to-antiferromagnetic transition temperature of 134 K. The ac susceptibility shows the clear onset of a partial diamagnetic response with an onset temperature, commensurate with a subtle downturn in resistivity at approximately 20 K. Below 20 K the magnetotransport shows in-plane anisotropy, magnetic-field history dependence and a hysteretic signature. Above 20 K the crystals show the widely reported high-field linear magnetoresistance. An enhanced noise signature in ac susceptibility is observed above 20 K, which varies in character with amplitude and frequency of the ac signal. The hysteresis in magnetoresistance and the observed sensitivity of the superconducting phase to the amplitude of the ac signal are indicative characteristics of granular or weakly linked filamentary superconductivity. Furthermore, these features taken together with the observed noise signature abovemore » $$T_{\\mathrm{c}}$$ suggests a link between the formation of the superconducting filamentary phase and the freezing of antiphase domain walls, known to exist in these materials.« less

  3. New results from T2K

    NASA Astrophysics Data System (ADS)

    Longhin, A.

    2017-12-01

    The T2K experiment is a 295-km long-baseline neutrino experiment in Japan employing an off-axis muon neutrino beam with a 0.6 GeV peak energy. The beam, produced from 30-GeV protons at the J-PARC complex on the Pacific coast, is directed to the Super-Kamiokande detector. T2K released the first long-baseline measurement of a nonzero value for the θ13 mixing parameter through the observation of electron neutrino appearance (vµ → ve) and produced the most precise measurement of θ23 through the observation of muon neutrino disappearance (vµ → vµ). T2K data, in combination with reactor experiments, also excludes at 90% C.L. a significant region of the Dirac CP phase: δCP < -3.02(-1.87) and δCP > -0.49(-0.98) for the normal (inverted) hierarchy. A full joint appearance and disappearance fit including both neutrino (7×1020 protons on target, PoT) and anti-neutrino (4 × 1020 PoT) data and, for the first time, a constraint from water target data in the near detector, is presented yielding improved sensitivity on δCP and improved precision on sin2 2θ23 and the atmospheric mass splitting.

  4. A MicroRNA Signature Associated With Metastasis of T1 Colorectal Cancers to Lymph Nodes.

    PubMed

    Ozawa, Tsuyoshi; Kandimalla, Raju; Gao, Feng; Nozawa, Hiroaki; Hata, Keisuke; Nagata, Hiroshi; Okada, Satoshi; Izumi, Daisuke; Baba, Hideo; Fleshman, James; Wang, Xin; Watanabe, Toshiaki; Goel, Ajay

    2018-03-01

    Most T1 colorectal cancers treated by radical surgery can now be cured by endoscopic submucosal dissection. Although 70%-80% of T1 colorectal cancers are classified as high risk, <16% of these patients actually have lymph node metastases. Biomarkers are needed to identify patients with T1 cancers with the highest risk of metastasis, to prevent unnecessary radical surgery. We collected data from The Cancer Genome Atlas and identified 5 microRNAs (MIR32, MIR181B, MIR193B, MIR195, and MIR411) with significant changes in expression in T1 and T2 colorectal cancers with vs without lymph node metastases. Levels of the 5 microRNAs identified patients with lymph node invasion by T1 or T2 cancers with an area under the receiver operating characteristic curve (AUROC) value of 0.84. We validated these findings in 2 cohorts of patients with T1 cancers, using findings from histology as the reference. The 5-microRNA signature identified T1 cancers with lymph node invasion in cohort 1 with an AUROC value of 0.83, and in cohort 2 with an AUROC value of 0.74. When we analyzed biopsy samples from untreated patients, the 5-microRNA signature identified cancers with lymph node metastases with an AUROC value of 0.77. The 5-microRNA therefore identifies high-risk T1 colorectal cancers with a greater degree of accuracy than currently used pathologic features. Copyright © 2018 AGA Institute. Published by Elsevier Inc. All rights reserved.

  5. A New Approach to Threshold Attribute Based Signatures

    DTIC Science & Technology

    2011-01-01

    Inspired by developments in attribute based encryption and signatures, there has recently been a spurtof progress in the direction of threshold ...attribute based signatures (t-ABS). In this work we propose anovel approach to construct threshold attribute based signatures inspired by ring signatures...Thresholdattribute based signatures, dened by a (t; n) threshold predicate, ensure that the signer holds atleastt out of a specied set of n attributes

  6. Automatic video shot boundary detection using k-means clustering and improved adaptive dual threshold comparison

    NASA Astrophysics Data System (ADS)

    Sa, Qila; Wang, Zhihui

    2018-03-01

    At present, content-based video retrieval (CBVR) is the most mainstream video retrieval method, using the video features of its own to perform automatic identification and retrieval. This method involves a key technology, i.e. shot segmentation. In this paper, the method of automatic video shot boundary detection with K-means clustering and improved adaptive dual threshold comparison is proposed. First, extract the visual features of every frame and divide them into two categories using K-means clustering algorithm, namely, one with significant change and one with no significant change. Then, as to the classification results, utilize the improved adaptive dual threshold comparison method to determine the abrupt as well as gradual shot boundaries.Finally, achieve automatic video shot boundary detection system.

  7. Electric-field-dependent phase volume fractions and enhanced piezoelectricity near the polymorphic phase boundary of (K0.5Na0.5)1-xLixNbO3 textured ceramics

    NASA Astrophysics Data System (ADS)

    Ge, Wenwei; Li, Jiefang; Viehland, D.; Chang, Yunfei; Messing, Gary L.

    2011-06-01

    The structure, ferroelectric and piezoelectric properties of <001> textured (K0.5Na0.5)0.98Li0.02NbO3 ceramics were investigated as a function of temperature and dc bias E. X-ray diffraction revealed an orthorhombic (O) → tetragonal (T) polymorphic phase boundary (PPB). Phase coexistence was found near the PPB over a 30 °C temperature range, where the relative phase volume fractions changed with temperature. Furthermore, increasing E applied along the <001> texture direction resulted in a notable increase in the volume fraction of the T phase at the expense of the O phase, effectively shifting the O → T boundary to lower temperature. An enhancement in the piezoelectric properties was found to accompany this increase in the T volume fraction.

  8. Immature MEF2C-dysregulated T-cell leukemia patients have an early T-cell precursor acute lymphoblastic leukemia gene signature and typically have non-rearranged T-cell receptors

    PubMed Central

    Zuurbier, Linda; Gutierrez, Alejandro; Mullighan, Charles G.; Canté-Barrett, Kirsten; Gevaert, A. Olivier; de Rooi, Johan; Li, Yunlei; Smits, Willem K.; Buijs-Gladdines, Jessica G.C.A.M.; Sonneveld, Edwin; Look, A. Thomas; Horstmann, Martin; Pieters, Rob; Meijerink, Jules P.P.

    2014-01-01

    Three distinct immature T-cell acute lymphoblastic leukemia entities have been described including cases that express an early T-cell precursor immunophenotype or expression profile, immature MEF2C-dysregulated T-cell acute lymphoblastic leukemia cluster cases based on gene expression analysis (immature cluster) and cases that retain non-rearranged TRG@ loci. Early T-cell precursor acute lymphoblastic leukemia cases exclusively overlap with immature cluster samples based on the expression of early T-cell precursor acute lymphoblastic leukemia signature genes, indicating that both are featuring a single disease entity. Patients lacking TRG@ rearrangements represent only 40% of immature cluster cases, but no further evidence was found to suggest that cases with absence of bi-allelic TRG@ deletions reflect a distinct and even more immature disease entity. Immature cluster/early T-cell precursor acute lymphoblastic leukemia cases are strongly enriched for genes expressed in hematopoietic stem cells as well as genes expressed in normal early thymocyte progenitor or double negative-2A T-cell subsets. Identification of early T-cell precursor acute lymphoblastic leukemia cases solely by defined immunophenotypic criteria strongly underestimates the number of cases that have a corresponding gene signature. However, early T-cell precursor acute lymphoblastic leukemia samples correlate best with a CD1 negative, CD4 and CD8 double negative immunophenotype with expression of CD34 and/or myeloid markers CD13 or CD33. Unlike various other studies, immature cluster/early T-cell precursor acute lymphoblastic leukemia patients treated on the COALL-97 protocol did not have an overall inferior outcome, and demonstrated equal sensitivity levels to most conventional therapeutic drugs compared to other pediatric T-cell acute lymphoblastic leukemia patients. PMID:23975177

  9. 15 CFR Appendix A to Subpart K of... - Cordell Bank National Marine Sanctuary Boundary Coordinates

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 15 Commerce and Foreign Trade 3 2010-01-01 2010-01-01 false Cordell Bank National Marine Sanctuary Boundary Coordinates A Appendix A to Subpart K of Part 922 Commerce and Foreign Trade Regulations Relating... Cordell Bank National Marine Sanctuary Pt. 922, Subpt. K, App. A Appendix A to Subpart K of Part 922...

  10. 15 CFR Appendix A to Subpart K of... - Cordell Bank National Marine Sanctuary Boundary Coordinates

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 15 Commerce and Foreign Trade 3 2011-01-01 2011-01-01 false Cordell Bank National Marine Sanctuary Boundary Coordinates A Appendix A to Subpart K of Part 922 Commerce and Foreign Trade Regulations Relating... Cordell Bank National Marine Sanctuary Pt. 922, Subpt. K, App. A Appendix A to Subpart K of Part 922...

  11. 15 CFR Appendix A to Subpart K of... - Cordell Bank National Marine Sanctuary Boundary Coordinates

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 15 Commerce and Foreign Trade 3 2012-01-01 2012-01-01 false Cordell Bank National Marine Sanctuary Boundary Coordinates A Appendix A to Subpart K of Part 922 Commerce and Foreign Trade Regulations Relating... Cordell Bank National Marine Sanctuary Pt. 922, Subpt. K, App. A Appendix A to Subpart K of Part 922...

  12. 15 CFR Appendix A to Subpart K of... - Cordell Bank National Marine Sanctuary Boundary Coordinates

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 15 Commerce and Foreign Trade 3 2014-01-01 2014-01-01 false Cordell Bank National Marine Sanctuary Boundary Coordinates A Appendix A to Subpart K of Part 922 Commerce and Foreign Trade Regulations Relating... Cordell Bank National Marine Sanctuary Pt. 922, Subpt. K, App. A Appendix A to Subpart K of Part 922...

  13. 15 CFR Appendix A to Subpart K of... - Cordell Bank National Marine Sanctuary Boundary Coordinates

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 3 2013-01-01 2013-01-01 false Cordell Bank National Marine Sanctuary Boundary Coordinates A Appendix A to Subpart K of Part 922 Commerce and Foreign Trade Regulations Relating... Cordell Bank National Marine Sanctuary Pt. 922, Subpt. K, App. A Appendix A to Subpart K of Part 922...

  14. Pose-oblivious shape signature.

    PubMed

    Gal, Ran; Shamir, Ariel; Cohen-Or, Daniel

    2007-01-01

    A 3D shape signature is a compact representation for some essence of a shape. Shape signatures are commonly utilized as a fast indexing mechanism for shape retrieval. Effective shape signatures capture some global geometric properties which are scale, translation, and rotation invariant. In this paper, we introduce an effective shape signature which is also pose-oblivious. This means that the signature is also insensitive to transformations which change the pose of a 3D shape such as skeletal articulations. Although some topology-based matching methods can be considered pose-oblivious as well, our new signature retains the simplicity and speed of signature indexing. Moreover, contrary to topology-based methods, the new signature is also insensitive to the topology change of the shape, allowing us to match similar shapes with different genus. Our shape signature is a 2D histogram which is a combination of the distribution of two scalar functions defined on the boundary surface of the 3D shape. The first is a definition of a novel function called the local-diameter function. This function measures the diameter of the 3D shape in the neighborhood of each vertex. The histogram of this function is an informative measure of the shape which is insensitive to pose changes. The second is the centricity function that measures the average geodesic distance from one vertex to all other vertices on the mesh. We evaluate and compare a number of methods for measuring the similarity between two signatures, and demonstrate the effectiveness of our pose-oblivious shape signature within a 3D search engine application for different databases containing hundreds of models.

  15. Abrupt appearance of shocked quartz at the Cretaceous-Tertiary boundary, Raton Basin, Colorado and New Mexico

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Izett, G.A.; Pillmore, C.L.

    1985-01-01

    Unique quartz grains as large as 0.5 mm and having up to 6 sets of closely spaced microfractures (CSM) occur at the palynological K-T boundary at 9 scattered sites from Trinidad, Colorado, south 50 km to Raton, New Mexico. Similar quartz grains at the K-T boundary in Montana and Europe were ascribed a shock-metamorphic origin by B. Bohor and colleagues in 1984-85. In the Raton Basin, quartz grains with CSM are concentrated at the top and base of a 2.5-cm-tick kaolinite bed in a nonmarine sequence of somber-colored sandstone, siltstone, shale, and coal. No quartz grains with CSM have yetmore » been found below the K-T bed in the Raton Basin, but a few have been found about 25 cm below the K-T bed at Brownie Butte, Montana. Most quartz grains having CSM are single optical units, but some are compound grains showing sutured boundaries (metaquartzite). Nearly all quartz grains with CSM have refractive indices and birefringence normal for quartz which suggests they formed at not more than 100 kb (low shock); however, a few have n/sub 0/ lowered to 1.538, but have normal birefringence. About half of 100 measured CSM in quartz make an angle of 15-25 degrees with the base (0001). The K-T kaolinite bed in the Raton Basin contains anomalously large amounts of Ir and is possibly coeval with marine, Ir-bearing K-T claystone beds in Europe described in 1980 by W. Alvarez and his associated who suggested they formed when a large bolide struck the Earth causing mass extinction of certain animals and plants. The shocked quartz and metaquartzite at the K-T boundary is compelling evidence that a bolide struck an onland-area of quartz-rich crustal rocks--not in an ocean.« less

  16. High-resolution leaf-fossil record spanning the Cretaceous/Tertiary boundary

    USGS Publications Warehouse

    Johnson, K.R.; Nichols, D.J.; Attrep, M.; Orth, C.J.

    1989-01-01

    THEORIES that explain the extinctions characterizing the Cretaceous/Tertiary (K/T) boundary1-3 need to be tested by analyses of thoroughly sampled biotas. Palynological studies are the primary means for stratigraphic placement of the terrestrial boundary and for estimates of plant extinction4-12, but have not been combined with quantitative analyses of fossil leaves (megaflora). Megafloral studies complement palynology by representing local floras with assemblages capable of high taxonomic resolution13, but have previously lacked the sample size and stratigraphic spacing needed to resolve latest Cretaceous floral history5,14-18. We have now combined megafloral data from a 100-m-thick composite K/T boundary section in North Dakota with detailed palynological analysis. Here the boundary is marked by a 30% palynofloral extinction coincident with iridium and shocked-mineral anomalies and lies ???2 m above the highest dinosaur remains. The megaflora undergoes a 79% turnover across the boundary, and smaller changes 17- and 25-m below it. This pattern is consistent with latest Cretaceous climatic warming preceding a bolide impact. ?? 1989 Nature Publishing Group.

  17. Strangelove ocean at era boundaries, terrestrial or extraterrestrial cause

    NASA Astrophysics Data System (ADS)

    Hsue, Kenneth J.

    Negative perturbations in carbon-isotope value of calcite in pelagic sediments were found at times of biotic crisis, marking horizons which are, or were proposed as era boundaries: Cretaceous/Tertiary (K/T), Permian/Triassic (P/T), and Precambrian/Cambrian (PreC/C). The anomaly was also found at several other mass-extinction horizons, such as terminal Ordovician, Frasnian-Famenian, etc. Studies of K/T boundary indicate that only the planktic fraction of the sediments has the negative isotope anomaly, whereas the benthic fraction has the same value across the boundary. This geochemical signal is thus considered a record of strangelove ocean, or an ocean where isotope fractionation of dissolved carbonate ions in surface waters (by biotic function of planktic organisms) has been significantly reduced because of the drastic reduction of the biomass in the oceans. The reduction of marine biomass at each of the era boundaries was related to chemical pollution of the oceans as a consequence of a catastrophic event; a pH decrease of 0.5 could inhibit the fertility of planktons. Studies of earthquakes, volcanic eruptions, and meteorite-impact occurrences have indicated a linearly inverse log/log relationship between the magnitude and frequency of events. The frequency of era boundaries in geologic history supports the postulate that the rare events causing those biotic crises were large bolide-impacts.

  18. Strangelove ocean at era boundaries, terrestrial or extraterrestrial cause

    NASA Technical Reports Server (NTRS)

    Hsue, Kenneth J.

    1988-01-01

    Negative perturbations in carbon-isotope value of calcite in pelagic sediments were found at times of biotic crisis, marking horizons which are, or were proposed as era boundaries: Cretaceous/Tertiary (K/T), Permian/Triassic (P/T), and Precambrian/Cambrian (PreC/C). The anomaly was also found at several other mass-extinction horizons, such as terminal Ordovician, Frasnian-Famenian, etc. Studies of K/T boundary indicate that only the planktic fraction of the sediments has the negative isotope anomaly, whereas the benthic fraction has the same value across the boundary. This geochemical signal is thus considered a record of strangelove ocean, or an ocean where isotope fractionation of dissolved carbonate ions in surface waters (by biotic function of planktic organisms) has been significantly reduced because of the drastic reduction of the biomass in the oceans. The reduction of marine biomass at each of the era boundaries was related to chemical pollution of the oceans as a consequence of a catastrophic event; a pH decrease of 0.5 could inhibit the fertility of planktons. Studies of earthquakes, volcanic eruptions, and meteorite-impact occurrences have indicated a linearly inverse log/log relationship between the magnitude and frequency of events. The frequency of era boundaries in geologic history supports the postulate that the rare events causing those biotic crises were large bolide-impacts.

  19. Advanced Boundary Electrode Modeling for tES and Parallel tES/EEG.

    PubMed

    Pursiainen, Sampsa; Agsten, Britte; Wagner, Sven; Wolters, Carsten H

    2018-01-01

    This paper explores advanced electrode modeling in the context of separate and parallel transcranial electrical stimulation (tES) and electroencephalography (EEG) measurements. We focus on boundary condition-based approaches that do not necessitate adding auxiliary elements, e.g., sponges, to the computational domain. In particular, we investigate the complete electrode model (CEM) which incorporates a detailed description of the skin-electrode interface including its contact surface, impedance, and normal current distribution. The CEM can be applied for both tES and EEG electrodes which are advantageous when a parallel system is used. In comparison to the CEM, we test two important reduced approaches: the gap model (GAP) and the point electrode model (PEM). We aim to find out the differences of these approaches for a realistic numerical setting based on the stimulation of the auditory cortex. The results obtained suggest, among other things, that GAP and GAP/PEM are sufficiently accurate for the practical application of tES and parallel tES/EEG, respectively. Differences between CEM and GAP were observed mainly in the skin compartment, where only CEM explains the heating effects characteristic to tES.

  20. Chemical signature of a migrating grain boundaries in polycrystalline olivine

    NASA Astrophysics Data System (ADS)

    Boneh, Y.; Marquardt, K.; Skemer, P. A.

    2017-12-01

    Olivine is the most abundant phase and influences strongly the physical and chemical properties of the upper mantle. The structure and chemistry of olivine grain-boundaries is important to understand, as these interfaces provide a reservoir for incompatible elements and partial melt, and serve as a fast pathway for chemical diffusion. This project investigates the chemical characteristics of grain boundaries in an olivine-rich aggregate. The sample is composed of Fo50 olivine crystals with minor amounts of enstatite. It was previously deformed (Hansen et al., 2016) and then annealed (Boneh et al., 2017) to investigate the microstructural changes during recrystallization. This transient microstructure has a bimodal grain size distribution and includes grains that experienced abnormal grain-growth, (porphyroblasts) and highly strained grains with no significant recrystallization or growth (matrix). Using high-resolution transmission electron microscopy (HR-TEM) with energy dispersive X-ray (EDX) at the Bayerisches Geoinstitut (BGI), we characterized boundaries between pairs of porphyroblasts, pairs of matrix grains, and mixed boundaries between porphyroblast and matrix grains. It was found that the boundary between porphyroblasts is enriched in Al and Ca and depleted in Mg, in comparison to grain interiors. However, matrix-matrix boundaries show less chemical segregation of these elements. The relatively high level of chemical segregation to porphyroblast grain boundaries offers different possible interpretations: 1) During grain boundary migration incompatible elements are swept up by the migrating grain boundary. 2) Large angle grain boundaries provide a large density of energetically favorable storage sites for incompatible elements. 3) Diffusion along low angle grain boundaries is too slow to allow for fast chemical equilibration between the different grain boundaries. 4) Dislocations cores serve as an important transport media for impurities (i.e., Cottrell

  1. QCD dipole model and k T factorization

    NASA Astrophysics Data System (ADS)

    Bialas, A.; Navelet, H.; Peschanski, R.

    2001-01-01

    It is shown that the colour dipole approach to hard scattering at high energy is fully compatible with k T factorization at the leading logarithm approximation (in - logx Bj). The relations between the dipole amplitudes and unintegrated diagonal and non-diagonal gluon distributions are given. It is also shown that including the exact gluon kinematics in the k T factorization formula destroys the conservation of transverse position vectors and thus is incompatible with the dipole model for both elastic and diffractive amplitudes.

  2. Recalibration of the Palaeocene-Eocene boundary (P-E) using high precision U-Pb and Ar-Ar isotopic dating

    NASA Astrophysics Data System (ADS)

    Chambers, L.; Pringle, M.; Fitton, G.; Larsen, L. M.; Pedersen, A. K.; Parrish, R.

    2003-04-01

    In the current time scales (Cande and Kent, 95; Berggren et al, 95) the P-E Boundary is positioned at 55 Ma based primarily on the age of the -17 ash layer in Denmark. In the absence of a global stratigraphic section and point the boundary is an interval of 1 m.y. from 55.5 to 54.5 Ma that includes all of the different means of calibrating the boundary tie point, including the NP9/NP10 calcareous nannofossil zonal boundary, the planktonic foraminiferal P5/P6a zonal boundary, preliminary ages for the -17 and +19 ash layers (unpub.), the base of the London Clay Formation, and the δ13C spike. Here we present new Ar-Ar ages for the -17 and +19 ash layers in Denmark and combine this study with a calibration of the Ar-Ar with the U-Pb method. As Ar-Ar ages are relative to the known age of a standard or monitor, U-Pb ages on zircons from the same rocks from the British Tertiary Igneous Province provide an absolute age calibration for all of our Ar-Ar ages (including the monitors). An additional complication arises because the time scale is currently being revised (J. Ogg, Pers. Comm.). In the new time scale the P-E boundary will stay at 55 Ma and the K-T boundary will move by 0.5 m.y. to 65.5 Ma. Our results have a direct impact on the positioning of the P-E Boundary relative to the K-T boundary as definitive K-T tektite is used as one of our Ar-Ar standards. Ar-Ar ages and U-Pb ages for the same sample from the BTIP are indistinguishable when the ages used for the Ar-Ar monitor minerals are those recommended in Renne et al (98). This means that the K-T tektite is 65.78 ± 0.03 Ma, the -17 ash is 54.52 ± 0.05Ma, and the +19 ash is 54.04 ± 0.14 Ma. If the P-E boundary is taken to be between the -17 and +19 ash layers, as in DSDP Hole 550 (the ashes bracket the planktonic foraminiferal P5/P6a zonal boundary) then the current position at 55 Ma is too old. We therefore suggest that if the K-T boundary moves to 65.5 Ma, then the P-E boundary should not stay at 55 Ma, but

  3. Asymptotic representations of augmented q-Onsager algebra and boundary K-operators related to Baxter Q-operators

    NASA Astrophysics Data System (ADS)

    Baseilhac, Pascal; Tsuboi, Zengo

    2018-04-01

    We consider intertwining relations of the augmented q-Onsager algebra introduced by Ito and Terwilliger, and obtain generic (diagonal) boundary K-operators in terms of the Cartan element of Uq (sl2). These K-operators solve reflection equations. Taking appropriate limits of these K-operators in Verma modules, we derive K-operators for Baxter Q-operators and corresponding reflection equations.

  4. Trace-element composition of Chicxulub crater melt rock, K/T tektites and Yucatan basement

    NASA Technical Reports Server (NTRS)

    Hildebrand, A. R.; Gregoire, D. C.; Attrep, M., Jr.; Claeys, P.; Thompson, C. M.; Boynton, W. V.

    1993-01-01

    The Cretaceous/Tertiary (K/T) boundary Chicxulub impact is the best preserved large impact in the geologic record. The Chicxulub crater has been buried with no apparent erosion of its intracrater deposits, and its ejecta blanket is known and is well preserved at hundreds of localities globally. Although most of the molten material ejected from the crater has been largely altered, a few localities still preserve tektite glass. Availability of intra- and extracrater impact products as well as plausible matches to the targeted rocks allows the comparison of compositions of the different classes of impact products to those of the impacted lithologies. Determination of trace-element compositions of the K/T tektites, Chicxulub melt rock, and the targeted Yucatan silicate basement and carbonate/evaporite lithologies have been made using instrumental neutron activation analysis (INAA) and inductively coupled plasma mass spectrometry (ICP-MS). Some sample splits were studied with both techniques to ensure that inter-laboratory variation was not significant or could be corrected. The concentration of a few major and minor elements was also checked against microprobe results. Radiochemical neutron activation analysis (RNAA) was used to determine Ir abundances in some samples.

  5. Local Structure of Sb in Cretaceous-Tertiary Boundary Clays from Stevns Klint By the XAFS Method

    NASA Astrophysics Data System (ADS)

    Hongu, H.; Yoshiasa, A.; Tobase, T.; Hiratoko, T.; Isobe, H.; Arima, H.; Sugiyama, K.; Okube, M.

    2014-12-01

    The Cretaceous-Tertiary (K-T) mass extinctions has been thought to be due to the asteroid impact since Ir anomalies was found by Alvarez et al. (1980) . The boundary clay is also enriched in Cr, Co, Ni, Cu, Zn, As and Sb. Especially concentrations of Sb and As are unusually large. However, the origins and concentration processes of Sb are unknown. In this study, local structure around antimony atoms in K-T boundary clay from Stevns Klint, Denmark, was determined by Sb K-edge XAFS spectroscopy. The XAFS analyses give the information about the chemical state and coordination environment around Sb atoms and help identify of the concentration phase, and also may provide various kinds of information about the asteroid impact and mass extinction. The XAFS measurements were performed at the BL-NW10A beamline at the Photon Factory in KEK, Tsukuba, Japan. The XANES spectra and radial structure function (RSF) showed that Sb in K-T boundary clays is high oxidation state Sb5+ and occupies a SbO6 octahedral site. The Sb-O interatomic distance in K-T clay sample is 2.08(1) A. It is known that Sb5+ is stable form in soil and soil water under an equilibrium situation within the Earth's surface environment. Antimony belongs to group 15 in the periodic table below arsenic, and the chemical behavior of Sb5+ is similar to that of As5+. Because there is a close correlation on co-precipitation between As and Fe (Ebihara and Miura, 1996; Sakai et al., 2007) , it is considered that Sb also correlates closely with Fe compounds (e.g., ferric hydroxides). Abundant ferric hydroxides occur in K-T boundary clays. It is considered that one of the reasons of abnormal high concentrations of Sb and As in K-T boundary clays is a lot of dust from impact ejecta falls with iron ions and deposits on surface of the Earth for a short period of time after the asteroid impact. ReferencesL. W. Alvarez, Science, 208, 1095-1108 (1980) M. Ebihara and T. Miura, Geochimica et Cosmochimica Acta, 60, 5133

  6. Vegaviidae, a new clade of southern diving birds that survived the K/T boundary

    NASA Astrophysics Data System (ADS)

    Agnolín, Federico L.; Egli, Federico Brissón; Chatterjee, Sankar; Marsà, Jordi Alexis Garcia; Novas, Fernando E.

    2017-12-01

    The fossil record of Late Cretaceous-Paleogene modern birds in the Southern Hemisphere includes the Maastrichtian Neogaeornis wetzeli from Chile, Polarornis gregorii and Vegavis iaai from Antarctica, and Australornis lovei from the Paleogene of New Zealand. The recent finding of a new and nearly complete Vegavis skeleton constitutes the most informative source for anatomical comparisons among Australornis, Polarornis, and Vegavis. The present contribution includes, for the first time, Vegavis, Polarornis, and Australornis in a comprehensive phylogenetic analysis. This analysis resulted in the recognition of these taxa as a clade of basal Anseriformes that we call Vegaviidae. Vegaviids share a combination of characters related to diving adaptations, including compact and thickened cortex of hindlimb bones, femur with anteroposteriorly compressed and bowed shaft, deep and wide popliteal fossa delimited by a medial ridge, tibiotarsus showing notably proximally expanded cnemial crests, expanded fibular crest, anteroposterior compression of the tibial shaft, and a tarsometatarsus with a strong transverse compression of the shaft. Isolated bones coming from the Cretaceous and Paleogene of South America, Antarctica, and New Zealand are also referred to here to Vegaviidae and support the view that these basal anseriforms were abundant and diverse at high southern latitudes. Moreover, vegaviids represent the first avian lineage to have definitely crossed the K-Pg boundary, supporting the idea that some avian clades were not affected by the end Mesozoic mass extinction event, countering previous interpretations. Recognition of Vegaviidae indicates that modern birds were diversified in southern continents by the Cretaceous and reinforces the hypothesis indicating the important role of Gondwana for the evolutionary history of Anseriformes and Neornithes as a whole.

  7. Clinically Relevant Cytotoxic Immune Cell Signatures and Clonal Expansion of T Cell Receptors in High-risk MYCN-not-amplified Human Neuroblastoma.

    PubMed

    Wei, Jun S; Kuznetsov, Igor B; Zhang, Shile; Song, Young K; Asgharzadeh, Shahab; Sindiri, Sivasish; Wen, Xinyu; Patidar, Rajesh; Nagaraj, Sushma; Walton, Ashley; Guidry Auvil, Jaime M; Gerhard, Daniela S; Yuksel, Aysen; Catchpoole, Daniel R; Hewitt, Stephen M; Sondel, Paul M; Seeger, Robert C; Maris, John M; Khan, Javed

    2018-05-21

    High-risk neuroblastoma is an aggressive disease. DNA sequencing studies have revealed a paucity of actionable genomic alterations and a low mutation burden, posing challenges to develop effective novel therapies. We used RNA sequencing (RNA-seq) to investigate the biology of this disease including a focus on tumor-infiltrating lymphocytes (TILs). We performed deep RNA-seq on pre-treatment diagnostic tumors from 129 high-risk and 21 low- or intermediate-risk patients with neuroblastomas. We used single-sample gene set enrichment analysis to detect gene expression signatures of TILs in tumors and examined their association with clinical and molecular parameters including patient outcome. The expression profiles of 190 additional pre-treatment diagnostic neuroblastomas, a neuroblastoma tissue microarray, and T-cell receptor (TCR) sequencing were used to validate our findings. We found that MYCN -not-amplified ( MYCN -NA) tumors had significant higher cytotoxic TIL signatures compared to MYCN -amplified ( MYCN -A) tumors. A reported MYCN-activation-signature was significantly associated with poor outcome for high-risk patients with MYCN -NA tumors; however, a subgroup of these patients who had elevated activated NK cells, CD8+ T-cells, and cytolytic signatures showed improved outcome and expansion of infiltrating T-cell receptor (TCR) clones. Furthermore, we observed up-regulation of immune exhaustion marker genes, indicating an immune suppressive microenvironment in these neuroblastomas. Conclusions: This study provides evidence that RNA signatures of cytotoxic TIL are associated with the presence of activated NK-/T-cells and improved outcomes in high-risk neuroblastoma patients harboring MYCN -NA tumors. Our findings suggest that these high-risk patients with MYCN -NA neuroblastoma may benefit from additional immunotherapies incorporated into the current therapeutic strategies. Copyright ©2018, American Association for Cancer Research.

  8. Trace element and isotope geochemistry of Cretaceous-Tertiary boundary sediments: identification of extra-terrestrial and volcanic components

    NASA Technical Reports Server (NTRS)

    Margolis, S. V.; Doehne, E. F.

    1988-01-01

    Trace element and stable isotope analyses were performed on a series of sediment samples crossing the Cretaceous-Tertiary (K-T) boundary from critical sections at Aumaya and Sopelano, Spain. The aim is to possibly distinguish extraterrestrial vs. volcanic or authigenic concentration of platinum group and other elements in K-T boundary transitional sediments. These sediments also have been shown to contain evidence for step-wise extinction of several groups of marine invertebrates, associated with negative oxygen and carbon isotope excursions occurring during the last million years of the Cretaceous. These isotope excursions have been interpreted to indicate major changes in ocean thermal regime, circulation, and ecosystems that may be related to multiple events during latest Cretaceous time. Results to date on the petrographic and geochemical analyses of the Late Cretaceous and Early Paleocene sediments indicate that diagenesis has obviously affected the trace element geochemistry and stable isotope compositions at Zumaya. Mineralogical and geochemical analysis of K-T boundary sediments at Zumaya suggest that a substantial fraction of anomalous trace elements in the boundary marl are present in specific mineral phases. Platinum and nickel grains perhaps represent the first direct evidence of siderophile-rich minerals at the boundary. The presence of spinels and Ni-rich particles as inclusions in aluminosilicate spherules from Zumaya suggests an original, non-diagenetic origin for the spherules. Similar spherules from southern Spain (Caravaca), show a strong marine authigenic overprint. This research represents a new approach in trying to directly identify the sedimentary mineral components that are responsible for the trace element concentrations associated with the K-T boundary.

  9. Palynologically calibrated vertebrate record from North Dakota consistent with abrupt dinosaur extinction at the Cretaceous-Tertiary boundary

    USGS Publications Warehouse

    Pearson, D.A.; Schaefer, T.; Johnson, K.R.; Nichols, D.J.

    2001-01-01

    New data from 17 Cretaceous-Tertiary (K-T) boundary sections and 53 vertebrate sites in the Hell Creek and Fort Union Formations in southwestern North Dakota document a 1.76 m barren interval between the highest Cretaceous vertebrate fossils and the palynologically recognized K-T boundary. The boundary is above the formational contact at 15 localities and coincident with it at two, demonstrating that the formational contact is diachronous. Dinosaurs are common in the highest Cretaceous vertebrate samples and a partial dinosaur skeleton in the Fort Union Formation is the highest recorded Cretaceous vertebrate fossil in this area.

  10. Benthic foraminifera at the Cretaceous-Tertiary boundary around the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Alegret, Laia; Molina, Eustoquio; Thomas, Ellen

    2001-10-01

    Cretaceous-Tertiary (K-T) boundary sections in northeastern Mexico contain marly formations separated by a controversial clastic unit. Benthic foraminifera in seven sections indicate middle and lower bathyal depths of deposition for the marls, with the exception of the upper bathyal northernmost section. Mixed neritic-bathyal faunas were present in the clastic unit, indicating redeposition in the deep basin by mass-wasting processes resulting from the K-T bolide impact in the Gulf of Mexico. Benthic foraminifera in the Mexican sections, and at other deep-sea locations, were not subject to major extinction at the time of impact, but there were temporary changes in assemblage composition. Benthic faunas indicate well- oxygenated bottom waters and mesotrophic conditions during the late Maastrichtian and increased food supply during the latest Maastrichtian. The food supply decreased drastically just after the K-T boundary, possibly because of the collapse of surface productivity. Cretaceous and early Paleogene benthic foraminifera, however, did not exhibit the benthic-pelagic coupling of present-day faunas, as documented by the lack of significant extinction at the K-T collapse of surface productivity. Much of the food supplied to the benthic faunas along this continental margin might have been refractory material transported from land or shallow coastal regions. The decrease in food supply at the K-T boundary might be associated with the processes of mass wasting, which removed surface, food-rich sediment. Benthic faunas show a staggered pattern of faunal recovery in the lowermost Paleogene, consistent with a staged recovery of the vertical organic flux but also with a gradual buildup of organic matter in the sediment.

  11. Shocked Quartz Aggregates of the Cretaceous-Tertiary Boundary at Colorado, USA

    NASA Astrophysics Data System (ADS)

    Miura, Y.; Okamoto, M.; Iancu, O. G.

    1993-07-01

    Shock-metamorphosed quartz (i.e., shocked quartz) at the Cretaceous-Tertiary boundary (K/T) at Colorado [1,2] reveals the following mineralogical data by X-ray diffractometry and high-resolution electron micrograph with energy- dispersive spectrometry. 1. Shocked quartz is not normal (perfect crystalline) quartz mineral but various quartz aggregates that show relatively low X-ray intensity (i.e., imperfect crystalline) and shock lamellae with crystalline quartz and amorphous glass [3]. 2. Analytical electron micrographs indicate that crystalline quartz silica with spotty dislocation features is included in dendritic amorphous glasses of potassium (K) feldspar composition. Various compositions of glassy materials are found in shocked quartz aggregates as matrix or alternate shock lamellae, which is important to estimate the target rock of impact. The composition of glassy matrix is dendritic K-feldspar in the K/T boundary at Clear Creak North (CCN), Colorado, whereas that in the Barringer Crater is quartz-rich composition from the target rock of sandstone (or some mixture with iron meteorite), and that in artificial impact rock [3] is dendritic silica composition. It is found in this study that shocked quartz aggregates from the CCN K/T boundary samples are supplied from quartz and K-feldspar-bearing target rock at impact event (Table 1). Table 1, which appears here in the hard copy, shows the compositions, texture, and origin of shocked quartz aggregates. References: [1] Alvarez L. W. et al. (1980) Science, 208, 1095-1107. [2] Izett G. (1989) GSA Spec. Pap. 249, 1-194. [3] Miura Y. (1991) Shock Waves, 1, 35-41, Springer-Verlag.

  12. Holographic signatures of cosmological singularities.

    PubMed

    Engelhardt, Netta; Hertog, Thomas; Horowitz, Gary T

    2014-09-19

    To gain insight into the quantum nature of cosmological singularities, we study anisotropic Kasner solutions in gauge-gravity duality. The dual description of the bulk evolution towards the singularity involves N=4 super Yang-Mills theory on the expanding branch of deformed de Sitter space and is well defined. We compute two-point correlators of Yang-Mills operators of large dimensions using spacelike geodesics anchored on the boundary. The correlators show a strong signature of the singularity around horizon scales and decay at large boundary separation at different rates in different directions. More generally, the boundary evolution exhibits a process of particle creation similar to that in inflation. This leads us to conjecture that information on the quantum nature of cosmological singularities is encoded in long-wavelength features of the boundary wave function.

  13. Epigenetic signatures of autism: trimethylated H3K4 landscapes in prefrontal neurons.

    PubMed

    Shulha, Hennady P; Cheung, Iris; Whittle, Catheryne; Wang, Jie; Virgil, Daniel; Lin, Cong L; Guo, Yin; Lessard, Andree; Akbarian, Schahram; Weng, Zhiping

    2012-03-01

    Neuronal dysfunction in cerebral cortex and other brain regions could contribute to the cognitive and behavioral defects in autism. To characterize epigenetic signatures of autism in prefrontal cortex neurons. We performed fluorescence-activated sorting and separation of neuronal and nonneuronal nuclei from postmortem prefrontal cortex, digested the chromatin with micrococcal nuclease, and deeply sequenced the DNA from the mononucleosomes with trimethylated H3K4 (H3K4me3), a histone mark associated with transcriptional regulation. Approximately 15 billion base pairs of H3K4me3-enriched sequences were collected from 32 brains. Academic medical center. A total of 16 subjects diagnosed as having autism and 16 control subjects ranging in age from 0.5 to 70 years. Identification of genomic loci showing autism-associated H3K4me3 changes in prefrontal cortex neurons. Subjects with autism showed no evidence for generalized disruption of the developmentally regulated remodeling of the H3K4me3 landscape that defines normal prefrontal cortex neurons in early infancy. However, excess spreading of H3K4me3 from the transcription start sites into downstream gene bodies and upstream promoters was observed specifically in neuronal chromatin from 4 of 16 autism cases but not in controls. Variable subsets of autism cases exhibit altered H3K4me3 peaks at numerous genes regulating neuronal connectivity, social behaviors, and cognition, often in conjunction with altered expression of the corresponding transcripts. Autism-associated H3K4me3 peaks were significantly enriched in genes and loci implicated in neurodevelopmental diseases. Prefrontal cortex neurons from subjects with autism show changes in chromatin structures at hundreds of loci genome-wide, revealing considerable overlap between genetic and epigenetic risk maps of developmental brain disorders.

  14. A Dynamic Time Warping based covariance function for Gaussian Processes signature identification

    NASA Astrophysics Data System (ADS)

    Silversides, Katherine L.; Melkumyan, Arman

    2016-11-01

    Modelling stratiform deposits requires a detailed knowledge of the stratigraphic boundaries. In Banded Iron Formation (BIF) hosted ores of the Hamersley Group in Western Australia these boundaries are often identified using marker shales. Both Gaussian Processes (GP) and Dynamic Time Warping (DTW) have been previously proposed as methods to automatically identify marker shales in natural gamma logs. However, each method has different advantages and disadvantages. We propose a DTW based covariance function for the GP that combines the flexibility of the DTW with the probabilistic framework of the GP. The three methods are tested and compared on their ability to identify two natural gamma signatures from a Marra Mamba type iron ore deposit. These tests show that while all three methods can identify boundaries, the GP with the DTW covariance function combines and balances the strengths and weaknesses of the individual methods. This method identifies more positive signatures than the GP with the standard covariance function, and has a higher accuracy for identified signatures than the DTW. The combined method can handle larger variations in the signature without requiring multiple libraries, has a probabilistic output and does not require manual cut-off selections.

  15. Reconstruction of neutrino induced NC-1π{sup 0} using the T2K-ND280 tracker

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    O’Keeffe, H. M.; Vacheret, A.; Barr, G. D.

    2015-05-15

    Single π{sup 0} production is the one of the most important backgrounds in the υ{sub e} appearance measurement in T2K. Large uncertainties in this production make it difficult to predict. Measurement at the near detector (ND280) is required both to constrain the background prediction at the far detector (Super-K) and also at the near detector to improve knowledge of beam υ{sub e} contamination. We present an analysis based on Monte Carlo simulation of neutral current (NC) single π{sup 0} in the tracker region. NC-1π{sup 0} events are selected using a specific two-gamma signature in the tracker region. One decay gammamore » is reconstructed by selecting an e+/e− pair starting in the Fine-Grained target Detector (FGD) and extending into the TPC, where the leptons can be identified and their momentum measured accurately. The second gamma is then selected in-time in the Calorimeter modules surrounding the tracker. Selections cuts, efficiency and purity of the selection are presented and projection of the expected number of single π{sup 0} candidates for 3 × 10{sup 20} protons on target (PoT) exposure is made.« less

  16. Macrofossil extinction patterns at Bay of Biscay Cretaceous-Tertiary boundary sections

    NASA Technical Reports Server (NTRS)

    Ward, Peter D.; Macleod, Kenneth

    1988-01-01

    Researchers examined several K-T boundary cores at Deep Sea Drilling Project (DSDP) core repositories to document biostratigraphic ranges of inoceramid shell fragments and prisms. As in land-based sections, prisms in the deep sea cores disappear well before the K-T boundary. Ammonites show a very different extinction pattern than do the inoceramids. A minimum of seven ammonite species have been collected from the last meter of Cretaceous strata in the Bay of Biscay basin. In three of the sections there is no marked drop in either species numbers or abundance prior to the K-T boundary Cretaceous strata; at the Zumaya section, however, both species richness and abundance drop in the last 20 m of the Cretaceous, with only a single ammonite specimen recovered to date from the uppermost 12 m of Cretaceous strata in this section. Researchers conclude that inoceramid bivalves and ammonites showed two different times and patterns of extinction, at least in the Bay of Biscay region. The inoceramids disappeared gradually during the Early Maestrichtian, and survived only into the earliest Late Maestrichtian. Ammonites, on the other hand, maintained relatively high species richness throughout the Maestrichtian, and then disappeared suddenly, either coincident with, or immediately before the microfossil extinction event marking the very end of the Cretaceous.

  17. Simultaneous observations of Ca II K and Mg II k in T Tauri stars

    NASA Technical Reports Server (NTRS)

    Calvet, N.; Basri, G.; Imhoff, C. L.; Giampapa, M. S.

    1985-01-01

    The first simultaneous, calibrated observations of the Ca II K and Mg II k resonance lines in T Tauri stars are presented. It is found that for T Tauri stars with mass greater than 1.5 solar mass, which have radiative cores and tend to be fast rotators, the k line seems to arise in an extended region (probably also responsible for the H-alpha emission), whereas the K line apparently originates closer to the highly inhomogeneous stellar surface. The lower mass stars, which are fully convective and tend to be slow rotators, are more easily described by a largely chromospheric model, consistent with main-sequence activity structures but at greater values of the nonradiative flux. The strongest emission-line stars in the low-mass group, however, are also likely to have extended k line regions.

  18. Cretaceous-Tertiary boundary in the Antarctic: Climatic cooling precedes biotic crisis

    NASA Technical Reports Server (NTRS)

    Stott, Lowell D.; Kennett, James P.

    1988-01-01

    Stable isotopic investigations were conducted on calcareous microfossils across two deep sea Cretaceous-Tertiary boundary sequences on Maud Rise, Weddell Sea, Antarctica. The boundary is taken at the level of massive extinctions in calcareous planktonic microfossils, and coincides with a sharp lithologic change from pure calcareous ooze to calcareous ooze with a large volcanic clay component. The uppermost Maestrichtian is marked by a long-term decrease in delta value of 0 to 18 which spans most of the lower and middle A. mayaroensis Zone and represents a warming trend which culminated in surface water temperatures of about 16 C. At approximately 3 meters below the K-T boundary this warming trend terminates abruptly and benthic and planktonic isotopic records exhibit a rapid increase in delta value of 0 to 18 that continues up to the K-T boundary. The trend towards cooler surface water temperatures stops abruptly at the K-T boundary and delta value of 0 to 18 values remain relatively stable through the Paleocene. Comparison of the Antarctic sequence with the previously documented deep sea records in the South Atlantic reveal shifts of similar magnitude in the latest Maestrichtian. It is indicated that the Southern Ocean underwent the most significant, and apparently permanent, climatic change. The latest Cretaceous oxygen isotopic shift recorded at Maud Rise and other deep sea sites is similar in magnitude to large positive delta valve of 0 to 18 shifts in the middle Eocene, at the Eocene/Oligocene boundary and in the middle Miocene that marked large scale climatic transitions which ultimately lead to cryospheric development of the Antarctic. The climatic shift at the end of the Cretaceous represents one of the most significant climatic transitions recorded in the latest Phanerozoic and had a profound effect on global climate as well as oceanic circulation.

  19. Wheat signature modeling and analysis for improved training statistics

    NASA Technical Reports Server (NTRS)

    Nalepka, R. F. (Principal Investigator); Malila, W. A.; Cicone, R. C.; Gleason, J. M.

    1976-01-01

    The author has identified the following significant results. The spectral, spatial, and temporal characteristics of wheat and other signatures in LANDSAT multispectral scanner data were examined through empirical analysis and simulation. Irrigation patterns varied widely within Kansas; 88 percent of wheat acreage in Finney was irrigated and 24 percent in Morton, as opposed to less than 3 percent for western 2/3's of the State. The irrigation practice was definitely correlated with the observed spectral response; wheat variety differences produced observable spectral differences due to leaf coloration and different dates of maturation. Between-field differences were generally greater than within-field differences, and boundary pixels produced spectral features distinct from those within field centers. Multiclass boundary pixels contributed much of the observed bias in proportion estimates. The variability between signatures obtained by different draws of training data decreased as the sample size became larger; also, the resulting signatures became more robust and the particular decision threshold value became less important.

  20. Magnesioferrite from the Cretaceous-Tertiary boundary, Caravaca, Spain

    USGS Publications Warehouse

    Bohor, B.F.; Foord, E.E.; Ganapathy, R.

    1986-01-01

    Magnesioferrite grading toward magnetite has been identified as a very small but meaningful constituent of the basal iron-rich portion of the Cretaceous-Tertiary (K-T) boundary clay at the Barranco del Gredero section, Caravaca, Spain. This spinel-type phase and others of the spinel group, found in K-T boundary clays at many widely separated sites, have been proposed as representing unaltered remnants of ejecta deposited from an earth-girdling dust cloud formed from the impact of an asteroid or other large bolide at the end of the Cretaceous period. The magnesioferrite occurs as euhedral, frequently skeletal, micron-sized octahedral crystals. The magnesioferrite contains 29 ?? 11 ppb Ir, which accounts for only part of the Ir anomaly at this K-T boundary layer (52 ?? 1 ppb Ir). Major element analyses of the magnesioferrite show variable compositions. Some minor solid solution exists toward hercynite-spinel and chromite-magnesiochromite. A trevorite-nichromite (NiFe2O4NiCr2O4) component is also present. The analyses are very similar to those reported for sites at Furlo and Petriccio, Umbria, Italy. On the basis of the morphology and general composition of the magnesioferrite grains, rapid crystallization at high temperature is indicated, most likely directly from a vapor phase and in an environment of moderate oxygen fugacity. Elemental similarity with metallic alloy injected into rocks beneath two known impact craters suggests that part of the magnesioferrite may be derived from the vaporized chondritic bolide itself, or from the mantle; there is no supporting evidence for its derivation from crustal target rocks. ?? 1986.

  1. HF radar signatures of the cusp and low-latitude boundary layer

    NASA Technical Reports Server (NTRS)

    Baker, K. B.; Dudeney, J. R.; Greenwald, R. A.; Pinnock, M.; Newell, P. T.; Rodger, A. S.; Mattin, N.; Meng, C.-I.

    1995-01-01

    Continuous ground-based observations of ionospheric and magnetospheric regions are critical to the Geospace Environmental Modeling (GEM) program. It is therefore important to establish clear intercalibrations between different ground-based instruments and satellites in order to clearly place the ground-based observations in context with the corresponding in situ satellite measurements. HF-radars operating at high latitudes are capable of observing very large spatial regions of the ionosphere on a nearly continuous basis. In this paper we report on an intercalibration study made using the Polar Anglo-American Conjugate Radar Experiment radars located at Goose Bay, Labrador, and Halley Station, Antarctica, and the Defense Meteorological Satellite Program (DMSP) satellites. The DMSP satellite data are used to provide clear identifications of the ionospheric cusp and the low-latitude boundary layer (LLBL). The radar data for eight cusp events and eight LLBL events have been examined in order to determine a radar signature of these ionospheric regions. This intercalibraion indicates that the cusp is always characterized by wide, complex Doppler power spectra, whereas the LLBL is usually found to have spectra dominated by a single component. The distribution of spectral widths in the cusp is of a generally Gaussian form with a peak at about 220 m/s. The distribution of spectral widths in the LLBL is more like an exponential distribution, with the peak of the distribution occurring at about 50 m/s. There are a few cases in the LLBL where the Doppler power spectra are strikingly similar to those observed in the cusp.

  2. T dwarfs all the way to 550 K?

    NASA Astrophysics Data System (ADS)

    Burningham, Ben; Pinfield, D. J.; Leggett, S. K.; Tamura, M.; Lucas, P. W.; Homeier, D.

    2009-02-01

    We highlight recent results from the UKIDSS Large Area Survey (LAS) including a T dwarf with an estimated Teff = 550-600 K and new constraints on the substellar mass function in the field. We also define the T9 subtype as an extension to the T spectral sequence defined by Burgasser et al. (2006).

  3. The debate over the Cretaceous-Tertiary boundary

    NASA Technical Reports Server (NTRS)

    Alvarez, W.; Asaro, F.; Alvarez, L. W.; Michel, H. V.

    1988-01-01

    Large-body impact on the Earth is a rare but indisputable geologic process. The impact rate is approximately known from objects discovered in Earth-crossing orbits and from the statistics of craters on the Earth's surface. Tektite and microtektite strewn fields constitute unmistakable ejecta deposits that can be due only to large-body impacts. The Cretaceous-Tertiary (K-T) boundary coincides with an unusually severe biological trauma, and this stratigraphic horizon is marked on a worldwide basis by anomalous concentrations of noble metals in chondritic proportions, mineral spherules with relict quench-crystallization textures, and mineral and rock grains showing shock deformation. These features are precisely compatible with an impact origin. Although only impact explains all the types of K-T boundary evidence, the story may not be as simple as once thought. The original hypothesis envisioned one large impact, triggering one great extinction. Newer evidence hints at various complications. Different challenges are faced by the occupants of each apex of a three-cornered argument over the K-T event. Proponents of a non-impact explanation must show that the evidence fits their preferred model better than it fits the impact scenario. Proponents of the single impact-single extinction view must explain away the complications. Proponents of a more complex impact crisis must develop a reasonable scenario which honors the new evidence.

  4. Preliminary Ar-40/Ar-39 age spectrum and laser probe dating of the M1 core of the Manson Impact Structure, Iowa: A K-T boundary crater candidate

    NASA Technical Reports Server (NTRS)

    Kunk, M. J.; Snee, L. W.; French, B. M.; Harlan, S. S.; Mcgee, J. J.

    1993-01-01

    Preliminary Ar-40/Ar-39 age spectrum and laser probe dating results from new drill core from the 35-km-diameter Manson Impact Structure (MIS), Iowa indicates a reasonable possibility that the MIS is a Cretaceous-Tertiary (K-T) boundary impact event. Several different types of samples from a melt-matrix breccia, a unit of apparent crater fill intersected by the M1 core, were analyzed. Ar-40/Ar-39 results from these samples indicate a maximum age for the MIS of about 65.4 plus or minus 0.4(2 sigma) Ma. Petrographic analyses of the samples indicate a high probability that all the dated samples from the melt-matrix breccia contain relict grains that were not entirely melted or degassed at the time of impact, suggesting that the actual age of the MIS could be somewhat younger than our preliminary results indicate. The results are consistent with a previously published age estimate of shocked microcline from the MIS central uplift of 65.7 plus or minus 1.0 Ma.

  5. Discovery of an unconventional charge density wave at the surface of K 0.9Mo 6O 17

    DOE PAGES

    Mou, Daixiang; Sapkota, Aashish; Kung, H. -H.; ...

    2016-05-13

    In this study, we use angle resolved photoemission spectroscopy, Raman spectroscopy, low energy electron diffraction, and x-ray scattering to reveal an unusual electronically mediated charge density wave (CDW) in K 0.9Mo 6O 17. Not only does K 0.9Mo 6O 17 lack signatures of electron-phonon coupling, but it also hosts an extraordinary surface CDW, with T S_CDW = 220 K nearly twice that of the bulk CDW, T B_CDW = 115 K. While the bulk CDW has a BCS-like gap of 12 meV, the surface gap is 10 times larger and well in the strong coupling regime. Strong coupling behavior combinedmore » with the absence of signatures of strong electron-phonon coupling indicates that the CDW is likely mediated by electronic interactions enhanced by low dimensionality.« less

  6. T11TS immunotherapy repairs PI3K-AKT signaling in T-cells: Clues toward enhanced T-cell survival in rat glioma model.

    PubMed

    Chaudhuri, Suhnrita; Singh, Manoj K; Bhattacharya, Debanjan; Datta, Ankur; Hazra, Iman; Mondal, Somnath; Faruk Sk Md, Omar; Ronsard, Larance; Ghosh, Tushar K; Chaudhuri, Swapna

    2018-02-01

    Malignant glioma is the most fatal of astrocytic lineage tumors despite therapeutic advances. Onset and progression of gliomas is accompanied by severe debilitation of T-cell defense and T-cell survival. One of the chief contributors to T-cell survival downstream of activation is the PI3K-AKT pathway. Our prior studies showed that the novel immunotherapeutic molecule T11-target structure (T11TS) blocks T-cell apoptosis in glioma. We also showed activation of immunological synapse components and calcineurin-NFAT pathway following T11TS immunotherapy of glioma-bearing rats. This lead to investigations whether such T-cell activation upon T11TS therapy translates into activation of downstream PI3K/AKT signals which may be related to observed blockade of T-cell apoptosis. For the purpose, we assessed by flowcytometry and immunoblotting, expressions of PI3K, PDK1, AKT, p-AKT, and PTEN in splenic T-cells of normal, experimentally-induced glioma-bearing rats and glioma-bearing rats receiving first, second and third doses of T11TS. We also determined comparative nuclear translocation of NF-κB across groups. We found significant increases in T-cell expressions of PDK1, PI3K, and p-AKT in T11TS-treated animal groups compared to sharp downregulations in glioma. AKT levels remained unchanged across groups. PTEN levels declined sharply after T11TS immunotherapy. T11TS also caused enhanced NF-κB translocation to the T-cell nucleus compared to glioma group. Results showed heightened activation of the PI3K-AKT pathway in glioma-bearing rats following T11TS immunotherapy. These results illustrate the novel role of T11TS immunotherapy in ameliorating the PI3K pathway in T-cells in glioma-bearing animals to enhance T-cell survival, according greater defense against glioma. The study thus has far-reaching clinical outcomes. © 2017 Wiley Periodicals, Inc.

  7. Amino acid signature enables proteins to recognize modified tRNA.

    PubMed

    Spears, Jessica L; Xiao, Xingqing; Hall, Carol K; Agris, Paul F

    2014-02-25

    Human tRNA(Lys3)UUU is the primer for HIV replication. The HIV-1 nucleocapsid protein, NCp7, facilitates htRNA(Lys3)UUU recruitment from the host cell by binding to and remodeling the tRNA structure. Human tRNA(Lys3)UUU is post-transcriptionally modified, but until recently, the importance of those modifications in tRNA recognition by NCp7 was unknown. Modifications such as the 5-methoxycarbonylmethyl-2-thiouridine at anticodon wobble position-34 and 2-methylthio-N(6)-threonylcarbamoyladenosine, adjacent to the anticodon at position-37, are important to the recognition of htRNA(Lys3)UUU by NCp7. Several short peptides selected from phage display libraries were found to also preferentially recognize these modifications. Evolutionary algorithms (Monte Carlo and self-consistent mean field) and assisted model building with energy refinement were used to optimize the peptide sequence in silico, while fluorescence assays were developed and conducted to verify the in silico results and elucidate a 15-amino acid signature sequence (R-W-Q/N-H-X2-F-Pho-X-G/A-W-R-X2-G, where X can be most amino acids, and Pho is hydrophobic) that recognized the tRNA's fully modified anticodon stem and loop domain, hASL(Lys3)UUU. Peptides of this sequence specifically recognized and bound modified htRNA(Lys3)UUU with an affinity 10-fold higher than that of the starting sequence. Thus, this approach provides an effective means of predicting sequences of RNA binding peptides that have better binding properties. Such peptides can be used in cell and molecular biology as well as biochemistry to explore RNA binding proteins and to inhibit those protein functions.

  8. Shock-induced vaporization of anhydrite and global cooling from the K/T impact

    NASA Astrophysics Data System (ADS)

    Gupta, Satish C.; Ahrens, Thomas J.; Yang, Wenbo

    2001-06-01

    maximum decrease in the average global surface temperature of 12-19 K for 9.0-9.5 years at the K/T boundary. Thus, the global cooling is inferred to have been less severe than that indicated by the upper limit of the range of 5-31 K decrease lasting for ˜12 years calculated by Pope et al. Because ambient global surface temperatures at K/T time were ˜18-20°C warmer than present values, this cooling event produced cold, but not freezing conditions at the Earth's surface.

  9. K-decompositions and 3d gauge theories

    DOE PAGES

    Dimofte, Tudor; Gabella, Maxime; Goncharov, Alexander B.

    2016-11-24

    This paper combines several new constructions in mathematics and physics. Mathematically, we study framed flat PGL(K, C)-connections on a large class of 3-manifolds M with boundary. We introduce a moduli spacemore » $$\\mathcal{L}$$ K(M) of framed flat connections on the boundary ∂M that extend to M. Our goal is to understand an open part of $$\\mathcal{L}$$ K(M) as a Lagrangian subvariety in the symplectic moduli space X un K(∂M) of framed flat connections on the boundary — and more so, as a “K 2-Lagrangian,” meaning that the K 2-avatar of the symplectic form restricts to zero. We construct an open part of $$\\mathcal{L}$$ K(M) from elementary data associated with the hypersimplicial K-decomposition of an ideal triangulation of M, in a way that generalizes (and combines) both Thurston’s gluing equations in 3d hyperbolic geometry and the cluster coordinates for framed flat PGL(K, C)-connections on surfaces. By using a canonical map from the complex of configurations of decorated flags to the Bloch complex, we prove that any generic component of $$\\mathcal{L}$$ K(M) is K 2-isotropic as long as ∂M satisfies certain topological constraints (theorem 4.2). In some cases this easily implies that $$\\mathcal{L}$$ K(M) is K 2-Lagrangian. For general M, we extend a classic result of Neumann and Zagier on symplectic properties of PGL(2) gluing equations to reduce the K 2-Lagrangian property to a combinatorial statement. Physically, we translate the K-decomposition of an ideal triangulation of M and its symplectic properties to produce an explicit construction of 3d N = 2 superconformal field theories T K [M] resulting (conjecturally) from the compactification of K M5-branes on M. This extends known constructions for K = 2. Just as for K = 2, the theories T K [M] are described as IR fixed points of abelian Chern-Simons-matter theories. Changes of triangulation (2-3 moves) lead to abelian mirror symmetries that are all generated by the elementary duality

  10. K-decompositions and 3d gauge theories

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dimofte, Tudor; Gabella, Maxime; Goncharov, Alexander B.

    This paper combines several new constructions in mathematics and physics. Mathematically, we study framed flat PGL(K, C)-connections on a large class of 3-manifolds M with boundary. We introduce a moduli spacemore » $$\\mathcal{L}$$ K(M) of framed flat connections on the boundary ∂M that extend to M. Our goal is to understand an open part of $$\\mathcal{L}$$ K(M) as a Lagrangian subvariety in the symplectic moduli space X un K(∂M) of framed flat connections on the boundary — and more so, as a “K 2-Lagrangian,” meaning that the K 2-avatar of the symplectic form restricts to zero. We construct an open part of $$\\mathcal{L}$$ K(M) from elementary data associated with the hypersimplicial K-decomposition of an ideal triangulation of M, in a way that generalizes (and combines) both Thurston’s gluing equations in 3d hyperbolic geometry and the cluster coordinates for framed flat PGL(K, C)-connections on surfaces. By using a canonical map from the complex of configurations of decorated flags to the Bloch complex, we prove that any generic component of $$\\mathcal{L}$$ K(M) is K 2-isotropic as long as ∂M satisfies certain topological constraints (theorem 4.2). In some cases this easily implies that $$\\mathcal{L}$$ K(M) is K 2-Lagrangian. For general M, we extend a classic result of Neumann and Zagier on symplectic properties of PGL(2) gluing equations to reduce the K 2-Lagrangian property to a combinatorial statement. Physically, we translate the K-decomposition of an ideal triangulation of M and its symplectic properties to produce an explicit construction of 3d N = 2 superconformal field theories T K [M] resulting (conjecturally) from the compactification of K M5-branes on M. This extends known constructions for K = 2. Just as for K = 2, the theories T K [M] are described as IR fixed points of abelian Chern-Simons-matter theories. Changes of triangulation (2-3 moves) lead to abelian mirror symmetries that are all generated by the elementary duality

  11. Oxygen diffusion in nanocrystalline yttria-stabilized zirconia: the effect of grain boundaries.

    PubMed

    De Souza, Roger A; Pietrowski, Martha J; Anselmi-Tamburini, Umberto; Kim, Sangtae; Munir, Zuhair A; Martin, Manfred

    2008-04-21

    The transport of oxygen in dense samples of yttria-stabilized zirconia (YSZ), of average grain size d approximately 50 nm, has been studied by means of 18O/16O exchange annealing and secondary ion mass spectrometry (SIMS). Oxygen diffusion coefficients (D*) and oxygen surface exchange coefficients (k*) were measured for temperatures 673T/Kboundaries. Rather, the analysis indicates that grain boundaries hinder oxygen transport.

  12. Modem Signature Analysis.

    DTIC Science & Technology

    1982-10-01

    AD-A127 993 MODEM SIGNATURE ANALISIS (U) PAR TECHNOLOGY CORP NEW / HARTFORD NY V EDWARDS ET AL. OCT 82 RADC-TR-82-269 F30602-80-C-0264 NCLASSIFIED F/G...as an indication of the class clustering and separation between different classes in the modem data base. It is apparent from the projection that the...that as the clusters disperse, the likelihood of a sample crossing the boundary into an adjacent region and causing a symbol decision error increases. As

  13. Implications of δCP = -90∘ towards determining hierarchy and octant at T2K and T2K-II

    NASA Astrophysics Data System (ADS)

    Ghosh, Monojit; Goswami, Srubabati; Raut, Sushant K.

    2017-02-01

    The T2K experiment has provided the first hint for the best-fit value for the leptonic CP phase δCP ˜- 90∘ from neutrino data. This is now corroborated by the NOνA neutrino runs. We study the implications for neutrino mass hierarchy and octant of 𝜃23 in the context of this data assuming that the true value of δCP in nature is - 90∘. Based on simple arguments on degeneracies in the probabilities, we show that a clear signal of δCP = -90∘ coming from T2K neutrino (antineutrino) data is only possible if the true hierarchy is normal and the true octant is higher (lower). Thus, if the T2K neutrino and antineutrino data are fitted separately and both give the true value of δCP = -90∘, this will imply that nature has chosen the true hierarchy to be normal and 𝜃23 ≈ 45∘. However, we find that the combined fit of neutrino and antineutrino data will still point to true hierarchy as normal but the octant of 𝜃23 will remain undetermined. We do our analysis for both, the current projected exposure (7.8 × 1021 pot) and planned extended exposure (20 × 1021 pot). We also present the CP discovery potential of T2K emphasizing on the role of antineutrinos. We find that one of the main contributions of the antineutrino data is to remove the degenerate solutions with the wrong octant. Thus, the antineutrino run plays a more significant role for those hierarchy-octant combinations for which this degeneracy is present. If this degeneracy is absent, then only neutrino run gives a better result for fixed 𝜃13. However, if we marginalize over 𝜃13 then, sensitivity corresponding to mixed run can be better than pure neutrino run.

  14. Magnetic Fe, Si, Al-Rich Impact Spherules from the P-T Boundary Layer at Graphite Peak, Antarctica

    NASA Technical Reports Server (NTRS)

    Petaev, M. I.; Jacobsen, S. B.; Basu, A. R.; Becker, L.

    2004-01-01

    The geological boundary between Triassic and Permian strata coincides with the greatest life extinction in the Earth's history. Although the cause of the extinction is still the subject of intense debates, recent discoveries in the P-T boundary layer of shocked quartz grains, fullerenes with the extraterrestrial noble gases, Fe metal nuggets, and chondritic meteorite fragments all point to a powerful collision of Earth with a celestial body in the late Permian. Here we report the discovery of magnetic Fe, Si, Al-rich impact spherules which accompany the chondritic meteorite fragments in some samples from the P-T boundary layer at Graphite Peak, Antarctica.

  15. Genome sequences of Alicycliphilus denitrificans strain BC and K601(T)

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Oosterkamp, Margreet J.; Veuskens, Teun; Plugge, Caroline M.

    2011-01-01

    Alicycliphilus denitrificans strain BC and A. denitrificans strain K601T degrade cyclic hydrocarbons. These strains have been isolated from a mixture of wastewater treatment plant material and benzene-polluted soil and from a wastewater treatment plant, respectively, suggesting their role in bioremediation of soil and water. Although the strains are phylogenetically closely related, there are some clear physiological differences. The hydrocarbon cyclohexanol, for example, can be degraded by strain K601T but not by strain BC. Furthermore, both strains can use nitrate and oxygen as an electron acceptor, but only strain BC can use chlorate as electron acceptor. To better understand the nitratemore » and chlorate reduction mechanisms coupled to the oxidation of cyclic compounds, the genomes of A. denitrificans strains BC and K601T were sequenced. Here, we report the complete genome sequences of A. denitrificans strains BC and K601T.« less

  16. Creep of quartz by dislocation and grain boundary processes

    NASA Astrophysics Data System (ADS)

    Fukuda, J. I.; Holyoke, C. W., III; Kronenberg, A. K.

    2015-12-01

    Wet polycrystalline quartz aggregates deformed at temperatures T of 600°-900°C and strain rates of 10-4-10-6 s-1 at a confining pressure Pc of 1.5 GPa exhibit plasticity at low T, governed by dislocation glide and limited recovery, and grain size-sensitive creep at high T, governed by diffusion and sliding at grain boundaries. Quartz aggregates were HIP-synthesized, subjecting natural milky quartz powder to T=900°C and Pc=1.5 GPa, and grain sizes (2 to 25 mm) were varied by annealing at these conditions for up to 10 days. Infrared absorption spectra exhibit a broad OH band at 3400 cm-1 due to molecular water inclusions with a calculated OH content (~4000 ppm, H/106Si) that is unchanged by deformation. Rate-stepping experiments reveal different stress-strain rate functions at different temperatures and grain sizes, which correspond to differing stress-temperature sensitivities. At 600-700°C and grain sizes of 5-10 mm, flow law parameters compare favorably with those for basal plasticity and dislocation creep of wet quartzites (effective stress exponents n of 3 to 6 and activation enthalpy H* ~150 kJ/mol). Deformed samples show undulatory extinction, limited recrystallization, and c-axis maxima parallel to the shortening direction. Similarly fine-grained samples deformed at 800°-900°C exhibit flow parameters n=1.3-2.0 and H*=135-200 kJ/mol corresponding to grain size-sensitive Newtonian creep. Deformed samples show some undulatory extinction and grain sizes change by recrystallization; however, grain boundary deformation processes are indicated by the low value of n. Our experimental results for grain size-sensitive creep can be compared with models of grain boundary diffusion and grain boundary sliding using measured rates of silicon grain boundary diffusion. While many quartz mylonites show microstructural and textural evidence for dislocation creep, results for grain size-sensitive creep may apply to very fine-grained (<10 mm) quartz mylonites.

  17. Of dups and dinos: evolution at the K/Pg boundary.

    PubMed

    Lohaus, Rolf; Van de Peer, Yves

    2016-04-01

    Fifteen years into sequencing entire plant genomes, more than 30 paleopolyploidy events could be mapped on the tree of flowering plants (and many more when also transcriptome data sets are considered). While some genome duplications are very old and have occurred early in the evolution of dicots and monocots, or even before, others are more recent and seem to have occurred independently in many different plant lineages. Strikingly, a majority of these duplications date somewhere between 55 and 75 million years ago (mya), and thus likely correlate with the K/Pg boundary. If true, this would suggest that plants that had their genome duplicated at that time, had an increased chance to survive the most recent mass extinction event, at 66mya, which wiped out a majority of plant and animal life, including all non-avian dinosaurs. Here, we review several processes, both neutral and adaptive, that might explain the establishment of polyploid plants, following the K/Pg mass extinction. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  18. Systematic CpT (ApG) depletion and CpG excess are unique genomic signatures of large DNA viruses infecting invertebrates.

    PubMed

    Upadhyay, Mohita; Sharma, Neha; Vivekanandan, Perumal

    2014-01-01

    Differences in the relative abundance of dinucleotides, if any may provide important clues on host-driven evolution of viruses. We studied dinucleotide frequencies of large DNA viruses infecting vertebrates (n = 105; viruses infecting mammals = 99; viruses infecting aves = 6; viruses infecting reptiles = 1) and invertebrates (n = 88; viruses infecting insects = 84; viruses infecting crustaceans = 4). We have identified systematic depletion of CpT(ApG) dinucleotides and over-representation of CpG dinucleotides as the unique genomic signature of large DNA viruses infecting invertebrates. Detailed investigation of this unique genomic signature suggests the existence of invertebrate host-induced pressures specifically targeting CpT(ApG) and CpG dinucleotides. The depletion of CpT dinucleotides among large DNA viruses infecting invertebrates is at least in part, explained by non-canonical DNA methylation by the infected host. Our findings highlight the role of invertebrate host-related factors in shaping virus evolution and they also provide the necessary framework for future studies on evolution, epigenetics and molecular biology of viruses infecting this group of hosts.

  19. Systematic CpT (ApG) Depletion and CpG Excess Are Unique Genomic Signatures of Large DNA Viruses Infecting Invertebrates

    PubMed Central

    Upadhyay, Mohita; Sharma, Neha; Vivekanandan, Perumal

    2014-01-01

    Differences in the relative abundance of dinucleotides, if any may provide important clues on host-driven evolution of viruses. We studied dinucleotide frequencies of large DNA viruses infecting vertebrates (n = 105; viruses infecting mammals = 99; viruses infecting aves = 6; viruses infecting reptiles = 1) and invertebrates (n = 88; viruses infecting insects = 84; viruses infecting crustaceans = 4). We have identified systematic depletion of CpT(ApG) dinucleotides and over-representation of CpG dinucleotides as the unique genomic signature of large DNA viruses infecting invertebrates. Detailed investigation of this unique genomic signature suggests the existence of invertebrate host-induced pressures specifically targeting CpT(ApG) and CpG dinucleotides. The depletion of CpT dinucleotides among large DNA viruses infecting invertebrates is at least in part, explained by non-canonical DNA methylation by the infected host. Our findings highlight the role of invertebrate host-related factors in shaping virus evolution and they also provide the necessary framework for future studies on evolution, epigenetics and molecular biology of viruses infecting this group of hosts. PMID:25369195

  20. Multiple factors in the origin of the Cretaceous/Tertiary boundary: the role of environmental stress and Deccan Trap volcanism.

    PubMed

    Glasby, G P; Kunzendorf, H

    1996-06-01

    A review of the scenarios for the Cretaceous/ Tertiary (K/T) boundary event is presented and a coherent hypothesis for the origin of the event is formulated. Many scientists now accept that the event was caused by a meteorite impact at Chicxulub in the Yucatan Peninsula, Mexico. Our investigations show that the oceans were already stressed by the end of the Late Cretaceous as a result of the long-term drop in atmospheric CO2, the long-term drop in sea level and the frequent development of oceanic anoxia. Extinction of some marine species was already occurring several million years prior to the K/T boundary. The biota were therefore susceptible to change. The eruption of the Deccan Traps, which began at 66.2 Ma, coincides with the K/T boundary events. It erupted huge quantities of H2SO4, HCl, CO2, dust and soot into the atmosphere and led to a significant drop in sea level and marked changes in ocean temperature. The result was a major reduction in oceanic productivity and the creation of an almost dead ocean. The volcanism lasted almost 0.7 m.y. Extinction of biological species was graded and appeared to correlate with the main eruptive events. Elements such as Ir were incorporated into the volcanic ash, possibly on soot particles. This horizon accumulated under anoxic conditions in local depressions and became the marker horizon for the K/T boundary. An oxidation front penetrated this horizon leading to the redistribution of elements. The eruption of the Deccan Traps is the largest volcanic event since the Permian-Triassic event at 245 Ma. It followed a period of 36 m.y. in which the earth's magnetic field failed to reverse. Instabilities in the mantle are thought to be responsible for this eruption and therefore for the K/T event. We therefore believe that the K/T event can be explained in terms of the effects of the Deccan volcanism on an already stressed biosphere. The meteorite impact at Chicxulub took place after the onset of Deccan volcanism. It probably

  1. CD8+ T Cells Provide an Immunologic Signature of Tuberculosis in Young Children

    PubMed Central

    Nyendak, Melissa; Kiguli, Sarah; Zalwango, Sarah; Mori, Tomi; Mayanja-Kizza, Harriet; Balyejusa, Stephen; Null, Megan; Baseke, Joy; Mulindwa, Deo; Byrd, Laura; Swarbrick, Gwendolyn; Scott, Christine; Johnson, Denise F.; Malone, LaShaunda; Mudido-Musoke, Philipa; Boom, W. Henry; Lewinsohn, David M.; Lewinsohn, Deborah A.

    2012-01-01

    Rationale: The immunologic events surrounding primary Mycobacterium tuberculosis infection and development of tuberculosis remain controversial. Young children who develop tuberculosis do so quickly after first exposure, thus permitting study of immune response to primary infection and disease. We hypothesized that M. tuberculosis–specific CD8+ T cells are generated in response to high bacillary loads occurring during tuberculosis. Objectives: To determine if M. tuberculosis–specific T cells are generated among healthy children exposed to M. tuberculosis and children with tuberculosis. Methods: Enzyme-linked immunosorbent spot assays were used to measure IFN-γ production in response to M. tuberculosis–specific proteins ESAT-6/CFP-10 by peripheral blood mononuclear cells and CD8+ T cells isolated from Ugandan children hospitalized with tuberculosis (n = 96) or healthy tuberculosis contacts (n = 62). Measurements and Main Results: The proportion of positive CD8+ T-cell assays and magnitude of CD8+ T-cell responses were significantly greater among young (<5 yr) tuberculosis cases compared with young contacts (P = 0.02, Fisher exact test, P = 0.01, Wilcoxon rank-sum, respectively). M. tuberculosis–specific T-cell responses measured in peripheral blood mononuclear cells were equivalent between groups. Conclusions: Among young children, M. tuberculosis–specific CD8+ T cells develop in response to high bacillary loads, as occurs during tuberculosis, and are unlikely to be found after M. tuberculosis exposure. T-cell responses measured in peripheral blood mononuclear cells are generated after M. tuberculosis exposure alone, and thus cannot distinguish exposure from disease. In young children, IFN-γ–producing M. tuberculosis–specific CD8+ T cells provide an immunologic signature of primary M. tuberculosis infection resulting in disease. PMID:22071329

  2. Dinoflagellate and calcareous nannofossil response to sea-level change in Cretaceous-Tertiary boundary sections

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Habib, D.; Moshkovitz, S.; Kramer, C.

    1992-02-01

    Stratigraphic sections in south-central Alabama were studied to test palynological evidence of sea-level change across the Cretaceous-Tertiary boundary. New evidence from both calcareous nannofossils and dinoflagellate cysts places the regional disconformity in Alabama (Type 1 sequence boundary) virtually at the K-T boundary. This suggests that sea-level fall may have contributed to mass-extinction event. Dinoflagellate diversity varies between systems tract components of coastal onlap. This parameter is useful for interpreting sea-level change in this part of the section, because dinoflagellates did not participate in the mass extinction. The iridium spikes in the roadcut near Braggs are of earliest Danian age andmore » correlate in relative magnitude with the lower values reported from directly above the K-T boundary in the Gubbio stratotype section. Iridium was concentrated in marine flooding surfaces in episodes of higher productivity of algal organic matter at the time when the iridium-enriched ocean encroached on the shelf during the first Cenozoic episode of sea-level rise.« less

  3. Shock pressures in igneous processes: Implications for K/T events

    NASA Astrophysics Data System (ADS)

    Rice, Alan

    The seismicity initiating the May 18, 1980 catastrophic eruption at Mt. St. Helens indicates an explosion occurred at depth generating an average pressure of about 500 kbar. Such pressures fall off with distance from the magma chamber although jointing, fractures, etc. may act as stress concentrators to extend the radius of formation of shocked minerals as far as a kilometer. Shocked minerals are not to be expected from the magma itself as high temperatures would anneal such features but temperatures fall away rapidly enough from the chamber wall to allow retention even of such possible exotics as stishovite. The subsequent kinetics of the failure of the north slope support these pressures as do thermodynamic considerations and nucleation kinetics of CO2 exsolution from magmatic melt. Confining pressures (e.g., overburden head) are not a limiting factor. Unconfined detonations in open air yield pressures to several megabars although some recent arguments asserted to be volcanological would indicate open air bursts greater than one bar to be impossible. Further, it has been indicated that pressure estimates from ballistic considerations have been too high and large phenocryst content in the discharge material argues against high pressure explosions. In the first instance, sonic choking and volatile diffusion time constraints make these assessments implausible and in the second instance, both theoretical and geological considerations provide for the phenocryst distributions under explosive situations. These results and recent discoveries of high levels of iridium in volcanic ash in the Antarctic blue ice have implication for K/T boundary events, mass extinctions and endoexplosions. The geographical breadth of volcanic activity attending the K-T transition (e.g., Antarctic volcanism as well as the Deccan Traps) indicates a global mechanism and suggests a large portion of the mantle experienced convective surge as occurs at high Rayleigh number flow. Scaling to mantle

  4. Acoustic Radiation from High-Speed Turbulent Boundary Layers in a Tunnel-Like Environment

    NASA Technical Reports Server (NTRS)

    Duan, Lian; Choudhari, Meelan M.; Zhang, Chao

    2015-01-01

    Direct numerical simulation of acoustic radiation from a turbulent boundary layer in a cylindrical domain will be conducted under the flow conditions corresponding to those at the nozzle exit of the Boeing/AFOSR Mach-6 Quiet Tunnel (BAM6QT) operated under noisy-flow conditions with a total pressure p(sub t) of 225 kPa and a total temperature of T(sub t) equal to 430 K. Simulations of acoustic radiation from a turbulent boundary layer over a flat surface are used as a reference configuration to illustrate the effects of the cylindrical enclosure. A detailed analysis of acoustic freestream disturbances in the cylindrical domain will be reported in the final paper along with a discussion pertaining to the significance of the flat-plate acoustic simulations and guidelines concerning the modeling of the effects of an axisymmetric tunnel wall on the noise field.

  5. Interpretation of f({epsilon}) measurements by T. Kimura, K. Akatsuka and K. Ohe

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Garcia, M.

    1996-11-26

    This note describes my analysis of the measurement of the electron energy distribution function in a DC glow discharge reported by T. Kimura, K. Akatsuka, and K. Ohe, in `Experimental and theoretical investigations of DC glow discharges in argon-nitrogen mixtures,`J. Phys. D: Appl. Phys. 27 (1994) 1664-1671. T. Kimura of the Department of Systems Engineering at the Nagoya Institute of Technology sent me this paper in 1994, as well as `Electron Energy Distribution Function in Neon-Nitrogen Mixture Positive Column,` T. Kimura, and K. Ohe, Jpn. J. Appl. Phys. Vol. 3 1, Part 1, No. 12A, December 1992, pp. 4051- 4052.more » I base my analysis on the data for a pure N{sub 2} discharge at p=1 torr in the 1994 paper. Figures 2 and 3 in that paper show a discrepancy between f({epsilon}) as measured by Langmuir probing and f({epsilon}) as calculated from E/N based on the measured axial field. Kimura et. al. explain their observation of hotter than expected electrons on superelastic collisions with vibrationally excited nitrogen. My fundamental point is that the radial field generated by ambipolar diffusion significantly augments E/N above the contribution from the axial field in this experiment, and creates a higher than expected radially averaged electron energy.« less

  6. On the Red Giant Branch: Ambiguity in the Surface Boundary Condition Leads to ≈100 K Uncertainty in Model Effective Temperatures

    NASA Astrophysics Data System (ADS)

    Choi, Jieun; Dotter, Aaron; Conroy, Charlie; Ting, Yuan-Sen

    2018-06-01

    The effective temperature (T eff) distribution of stellar evolution models along the red giant branch (RGB) is sensitive to a number of parameters including the overall metallicity, elemental abundance patterns, the efficiency of convection, and the treatment of the surface boundary condition (BC). Recently there has been interest in using observational estimates of the RGB T eff to place constraints on the mixing length parameter, α MLT, and possible variation with metallicity. Here we use 1D Modules for Experiments in Stellar Astrophysics (MESA) stellar evolution models to explore the sensitivity of the RGB T eff to the treatment of the surface BC. We find that different surface BCs can lead to ±100 K metallicity-dependent offsets on the RGB relative to one another in spite of the fact that all models can reproduce the properties of the Sun. Moreover, for a given atmosphere T–τ relation, we find that the RGB T eff is also sensitive to the optical depth at which the surface BC is applied in the stellar model. Nearly all models adopt the photosphere as the location of the surface BC, but this choice is somewhat arbitrary. We compare our models to stellar parameters derived from the APOGEE-Kepler sample of first ascent red giants and find that systematic uncertainties in the models due to treatment of the surface BC place a limit of ≈100 K below which it is not possible to make firm conclusions regarding the fidelity of the current generation of stellar models.

  7. The curved kinetic boundary layer of active matter.

    PubMed

    Yan, Wen; Brady, John F

    2018-01-03

    A body submerged in active matter feels the swim pressure through a kinetic accumulation boundary layer on its surface. The boundary layer results from a balance between translational diffusion and advective swimming and occurs on the microscopic length scale . Here , D T is the Brownian translational diffusivity, τ R is the reorientation time and l = U 0 τ R is the swimmer's run length, with U 0 the swim speed [Yan and Brady, J. Fluid. Mech., 2015, 785, R1]. In this work we analyze the swim pressure on arbitrary shaped bodies by including the effect of local shape curvature in the kinetic boundary layer. When δ ≪ L and l ≪ L, where L is the body size, the leading order effects of curvature on the swim pressure are found analytically to scale as J S λδ 2 /L, where J S is twice the (non-dimensional) mean curvature. Particle-tracking simulations and direct solutions to the Smoluchowski equation governing the probability distribution of the active particles show that λδ 2 /L is a universal scaling parameter not limited to the regime δ, l ≪ L. The net force exerted on the body by the swimmers is found to scale as F net /(n ∞ k s T s L 2 ) = f(λδ 2 /L), where f(x) is a dimensionless function that is quadratic when x ≪ 1 and linear when x ∼ 1. Here, k s T s = ζU 0 2 τ R /6 defines the 'activity' of the swimmers, with ζ the drag coefficient, and n ∞ is the uniform number density of swimmers far from the body. We discuss the connection of this boundary layer to continuum mechanical descriptions of active matter and briefly present how to include hydrodynamics into this purely kinetic study.

  8. Fluid signatures of rotational discontinuities at Earth's magnetopause

    NASA Technical Reports Server (NTRS)

    Scudder, J. D.

    1983-01-01

    Fluid signatures in the MHD approximation at rotational discontinuities (RD) of finite width called rotational shear layers (RSL) are examined for general flow and magnetic geometries. Analytical and geometrical arguments illustrate that the fluid speed can either go up or down across an RSL for a fixed normal mass flux. The speed profile may or may not be monotonic depending on the boundary conditions. The flow velocity may or may not be field aligned or ""jetting'' as a result of traversing the RSL. In general, significant ""convection'' is expected in the layer. The observable signatures of (MHD) RSL's depend on 7 (boundary condition) parameters are (1) the mass density, (2 to 5) the incident normal and transverse components of the magnetic field and fluid velocity, (6) the angle epsilon between the incident tangential flow velocity and tangential magnetic field, and (7) the size of the magnetic angular rotation implemented by the layer delta phi.

  9. Influence of Contact Angle Boundary Condition on CFD Simulation of T-Junction

    NASA Astrophysics Data System (ADS)

    Arias, S.; Montlaur, A.

    2018-03-01

    In this work, we study the influence of the contact angle boundary condition on 3D CFD simulations of the bubble generation process occurring in a capillary T-junction. Numerical simulations have been performed with the commercial Computational Fluid Dynamics solver ANSYS Fluent v15.0.7. Experimental results serve as a reference to validate numerical results for four independent parameters: the bubble generation frequency, volume, velocity and length. CFD simulations accurately reproduce experimental results both from qualitative and quantitative points of view. Numerical results are very sensitive to the gas-liquid-wall contact angle boundary conditions, confirming that this is a fundamental parameter to obtain accurate CFD results for simulations of this kind of problems.

  10. Fruit and Juice Epigenetic Signatures Are Associated with Independent Immunoregulatory Pathways.

    PubMed

    Nicodemus-Johnson, Jessie; Sinnott, Robert A

    2017-07-14

    Epidemiological evidence strongly suggests that fruit consumption promotes many health benefits. Despite the general consensus that fruit and juice are nutritionally similar, epidemiological results for juice consumption are conflicting. Our objective was to use DNA methylation marks to characterize fruit and juice epigenetic signatures within PBMCs and identify shared and independent signatures associated with these groups. Genome-wide DNA methylation marks (Illumina Human Methylation 450k chip) for 2,148 individuals that participated in the Framingham Offspring exam 8 were analyzed for correlations between fruit or juice consumption using standard linear regression. CpG sites with low P -values ( P < 0.01) were characterized using Gene Set Enrichment Analysis (GSEA), Ingenuity Pathway Analysis (IPA), and epigenetic Functional element Overlap analysis of the Results of Genome Wide Association Study Experiments (eFORGE). Fruit and juice-specific low P -value epigenetic signatures were largely independent. Genes near the fruit-specific epigenetic signature were enriched among pathways associated with antigen presentation and chromosome or telomere maintenance, while the juice-specific epigenetic signature was enriched for proinflammatory pathways. IPA and eFORGE analyses implicate fruit and juice-specific epigenetic signatures in the modulation of macrophage (fruit) and B or T cell (juice) activities. These data suggest a role for epigenetic regulation in fruit and juice-specific health benefits and demonstrate independent associations with distinct immune functions and cell types, suggesting that these groups may not confer the same health benefits. Identification of such differences between foods is the first step toward personalized nutrition and ultimately the improvement of human health and longevity.

  11. Fruit and Juice Epigenetic Signatures Are Associated with Independent Immunoregulatory Pathways

    PubMed Central

    Nicodemus-Johnson, Jessie; Sinnott, Robert A.

    2017-01-01

    Epidemiological evidence strongly suggests that fruit consumption promotes many health benefits. Despite the general consensus that fruit and juice are nutritionally similar, epidemiological results for juice consumption are conflicting. Our objective was to use DNA methylation marks to characterize fruit and juice epigenetic signatures within PBMCs and identify shared and independent signatures associated with these groups. Genome-wide DNA methylation marks (Illumina Human Methylation 450k chip) for 2,148 individuals that participated in the Framingham Offspring exam 8 were analyzed for correlations between fruit or juice consumption using standard linear regression. CpG sites with low P-values (P < 0.01) were characterized using Gene Set Enrichment Analysis (GSEA), Ingenuity Pathway Analysis (IPA), and epigenetic Functional element Overlap analysis of the Results of Genome Wide Association Study Experiments (eFORGE). Fruit and juice-specific low P-value epigenetic signatures were largely independent. Genes near the fruit-specific epigenetic signature were enriched among pathways associated with antigen presentation and chromosome or telomere maintenance, while the juice-specific epigenetic signature was enriched for proinflammatory pathways. IPA and eFORGE analyses implicate fruit and juice-specific epigenetic signatures in the modulation of macrophage (fruit) and B or T cell (juice) activities. These data suggest a role for epigenetic regulation in fruit and juice-specific health benefits and demonstrate independent associations with distinct immune functions and cell types, suggesting that these groups may not confer the same health benefits. Identification of such differences between foods is the first step toward personalized nutrition and ultimately the improvement of human health and longevity. PMID:28708104

  12. A Secure and Efficient Threshold Group Signature Scheme

    NASA Astrophysics Data System (ADS)

    Zhang, Yansheng; Wang, Xueming; Qiu, Gege

    The paper presents a secure and efficient threshold group signature scheme aiming at two problems of current threshold group signature schemes: conspiracy attack and inefficiency. Scheme proposed in this paper takes strategy of separating designed clerk who is responsible for collecting and authenticating each individual signature from group, the designed clerk don't participate in distribution of group secret key and has his own public key and private key, designed clerk needs to sign part information of threshold group signature after collecting signatures. Thus verifier has to verify signature of the group after validating signature of the designed clerk. This scheme is proved to be secure against conspiracy attack at last and is more efficient by comparing with other schemes.

  13. Analysis of Non-contact Acousto Thermal Signature Data (Postprint)

    DTIC Science & Technology

    2016-02-01

    AFRL-RX-WP-JA-2016-0321 ANALYSIS OF NON- CONTACT ACOUSTO-THERMAL SIGNATURE DATA (POSTPRINT) Amanda K. Criner AFRL/RX...October 2014 – 16 September 2015 4. TITLE AND SUBTITLE ANALYSIS OF NON- CONTACT ACOUSTO-THERMAL SIGNATURE DATA (POSTPRINT) 5a. CONTRACT NUMBER...words) The non- contact acousto-thermal signature (NCATS) is a nondestructive evaluation technique with potential to detect fatigue in materials such as

  14. Genetic Engineering of T Cells to Target HERV-K, an Ancient Retrovirus on Melanoma.

    PubMed

    Krishnamurthy, Janani; Rabinovich, Brian A; Mi, Tiejuan; Switzer, Kirsten C; Olivares, Simon; Maiti, Sourindra N; Plummer, Joshua B; Singh, Harjeet; Kumaresan, Pappanaicken R; Huls, Helen M; Wang-Johanning, Feng; Cooper, Laurence J N

    2015-07-15

    The human endogenous retrovirus (HERV-K) envelope (env) protein is a tumor-associated antigen (TAA) expressed on melanoma but not normal cells. This study was designed to engineer a chimeric antigen receptor (CAR) on T-cell surface, such that they target tumors in advanced stages of melanoma. Expression of HERV-K protein was analyzed in 220 melanoma samples (with various stages of disease) and 139 normal organ donor tissues using immunohistochemical (IHC) analysis. HERV-K env-specific CAR derived from mouse monoclonal antibody was introduced into T cells using the transposon-based Sleeping Beauty (SB) system. HERV-K env-specific CAR(+) T cells were expanded ex vivo on activating and propagating cells (AaPC) and characterized for CAR expression and specificity. This includes evaluating the HERV-K-specific CAR(+) T cells for their ability to kill A375-SM metastasized tumors in a mouse xenograft model. We detected HERV-K env protein on melanoma but not in normal tissues. After electroporation of T cells and selection on HERV-K(+) AaPC, more than 95% of genetically modified T cells expressed the CAR with an effector memory phenotype and lysed HERV-K env(+) tumor targets in an antigen-specific manner. Even though there is apparent shedding of this TAA from tumor cells that can be recognized by HERV-K env-specific CAR(+) T cells, we observed a significant antitumor effect. Adoptive cellular immunotherapy with HERV-K env-specific CAR(+) T cells represents a clinically appealing treatment strategy for advanced-stage melanoma and provides an approach for targeting this TAA on other solid tumors. ©2015 American Association for Cancer Research.

  15. Thermoelectrics. Dense dislocation arrays embedded in grain boundaries for high-performance bulk thermoelectrics.

    PubMed

    Kim, Sang Il; Lee, Kyu Hyoung; Mun, Hyeon A; Kim, Hyun Sik; Hwang, Sung Woo; Roh, Jong Wook; Yang, Dae Jin; Shin, Weon Ho; Li, Xiang Shu; Lee, Young Hee; Snyder, G Jeffrey; Kim, Sung Wng

    2015-04-03

    The widespread use of thermoelectric technology is constrained by a relatively low conversion efficiency of the bulk alloys, which is evaluated in terms of a dimensionless figure of merit (zT). The zT of bulk alloys can be improved by reducing lattice thermal conductivity through grain boundary and point-defect scattering, which target low- and high-frequency phonons. Dense dislocation arrays formed at low-energy grain boundaries by liquid-phase compaction in Bi(0.5)Sb(1.5)Te3 (bismuth antimony telluride) effectively scatter midfrequency phonons, leading to a substantially lower lattice thermal conductivity. Full-spectrum phonon scattering with minimal charge-carrier scattering dramatically improved the zT to 1.86 ± 0.15 at 320 kelvin (K). Further, a thermoelectric cooler confirmed the performance with a maximum temperature difference of 81 K, which is much higher than current commercial Peltier cooling devices. Copyright © 2015, American Association for the Advancement of Science.

  16. Monitoring oil displacement processes with k-t accelerated spin echo SPI.

    PubMed

    Li, Ming; Xiao, Dan; Romero-Zerón, Laura; Balcom, Bruce J

    2016-03-01

    Magnetic resonance imaging (MRI) is a robust tool to monitor oil displacement processes in porous media. Conventional MRI measurement times can be lengthy, which hinders monitoring time-dependent displacements. Knowledge of the oil and water microscopic distribution is important because their pore scale behavior reflects the oil trapping mechanisms. The oil and water pore scale distribution is reflected in the magnetic resonance T2 signal lifetime distribution. In this work, a pure phase-encoding MRI technique, spin echo SPI (SE-SPI), was employed to monitor oil displacement during water flooding and polymer flooding. A k-t acceleration method, with low-rank matrix completion, was employed to improve the temporal resolution of the SE-SPI MRI measurements. Comparison to conventional SE-SPI T2 mapping measurements revealed that the k-t accelerated measurement was more sensitive and provided higher-quality results. It was demonstrated that the k-t acceleration decreased the average measurement time from 66.7 to 20.3 min in this work. A perfluorinated oil, containing no (1) H, and H2 O brine were employed to distinguish oil and water phases in model flooding experiments. High-quality 1D water saturation profiles were acquired from the k-t accelerated SE-SPI measurements. Spatially and temporally resolved T2 distributions were extracted from the profile data. The shift in the (1) H T2 distribution of water in the pore space to longer lifetimes during water flooding and polymer flooding is consistent with increased water content in the pore space. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  17. Digital signature feasibility study

    DOT National Transportation Integrated Search

    2008-06-01

    The purpose of this study was to assess the advantages and disadvantages of using digital signatures to assist the Arizona Department of Transportation in conducting business. The Department is evaluating the potential of performing more electronic t...

  18. The effect of guide-field and boundary conditions on the features and signatures of collisionless magnetic reconnection in a stressed X-point collapse

    NASA Astrophysics Data System (ADS)

    Graf von der Pahlen, J.; Tsiklauri, D.

    2015-12-01

    Magnetic X-point collapse is investigated using a 2.5D fully relativistic particle-in-cell simulation, with varying strengths of guide-field as well as open and closed boundary conditions. In the zero guide-field case we discover a new signature of Hall-reconnection in the out-of-plane magnetic field, namely an octupolar pattern, as opposed to the well-studied quadrupolar out-of-plane field of reconnection. The emergence of the octupolar components was found to be caused by ion currents and is a general feature of X-point collapse. In a comparative study of tearing-mode reconnection, signatures of octupolar components are found only in the out-flow region. It is argued that space-craft observations of magnetic fields at reconnection sites may be used accordingly to identify the type of reconnection [1][2]. Further, initial oscillatory reconnection is observed, prior to reconnection onset, generating electro-magnetic waves at the upper-hybrid frequency, matching solar flare progenitor emission. When applying a guide-field, in both open and closed boundary conditions, thinner dissipation regions are obtained and the onset of reconnection is increasingly delayed. Investigations with open boundary conditions show that, for guide-fields close to the strength of the in-plane field, shear flows emerge, leading to the formation of electron flow vortices and magnetic islands [3]. Asymmetries in the components of the generalised Ohm's law across the dissipation region are observed. Extended in 3D geometry, it is shown that locations of magnetic islands and vortices are not constant along the height of the current-sheet. Vortices formed on opposite sites of the current-sheet travel in opposite directions along it, leading to a criss-cross vortex pattern. Possible instabilities resulting from this specific structure formation are to be investigated [4].[1] J. Graf von der Pahlen and D. Tsiklauri, Phys. Plasmas 21, 060705 (2014), [2] J. Graf von der Pahlen and D. Tsiklauri

  19. First oscillation analysis using neutrino and antineutrino data at T2K

    NASA Astrophysics Data System (ADS)

    Duffy, Kirsty

    2017-09-01

    We present details of the first T2K neutrino and antineutrino oscillation results, in which data collected using both a muon neutrino-enhanced neutrino beam and a muon antineutrino-enhanced neutrino beam are analysed, equating to 7.002×1020 protons on target (POT) and 7.471×1020 POT respectively. Both {ν }μ /{\\bar{ν }}μ disappearance and {ν }e/{\\bar{ν }}e appearance data are analysed using a Bayesian Markov Chain Monte Carlo method, providing the first ever sensitivity to the CP-violating phase δCP from T2K data alone. The T2K data favour near-maximal mixing, with sin2 θ 23 and Δ {m}322 consistent with previous T2K measurements, a value of sin2 θ 13 consistent with measurements by reactor experiments, and δCP close to -π/2. When fitting with T2K data alone, the 90% credible interval for δCP disfavours values around π/2: δ CP ∉ [0.38, 2.60] rad. When using a prior on sin2 2θ 13 from reactor measurements, the 90% credible interval contains δCP ∉ [-3.10, -0.17] rad, disfavouring the CP-conserving values 0 and ±π. The effect on this result of the δCP prior is also investigated and presented.

  20. Adaptation of signature-tagged mutagenesis to Escherichia coli K1 and the infant-rat model of invasive disease.

    PubMed

    Gonzalez, M D; Lichtensteiger, C A; Vimr, E R

    2001-05-01

    With the exception of the polysialic acid capsule (K1 antigen), little is known about other virulence factors needed for systemic infection by Escherichia coli K1, the leading cause of Gram-negative neonatal meningitis in humans. In this work, the functional genomics method of signature-tagged mutagenesis (STM) was adapted to E. coli K1 and the infant-rat model to identify non-capsule virulence genes. Validation of the method was demonstrated by the failure to recover a reconstructed acapsular mutant from bacterial pools used to systemically infect 5-day-old rats. Three new genes required for systemic disease were identified from a total of 192 mutants screened by STM (1.56% hit rate). Gut colonization, Southern blot hybridization, mixed-challenge infection, and DNA sequence analyses showed that the attenuating defects in the mutants were associated with transposon insertions in rfaL (O antigen ligase), dsbA (thiol:disulfide oxidoreductase), and a new gene, puvA (previously unidentified virulence gene A), with no known homologues. The results indicate the ability of STM to identify novel systemic virulence factors in E. coli K1.

  1. Thermodynamic Properties of Polyphenylquinoxaline in the Temperature Range of T → 0 to 570 K

    NASA Astrophysics Data System (ADS)

    Smirnova, N. N.; Markin, A. V.; Samosudova, Ya. S.; Bykova, T. A.; Shifrina, Z. B.; Serkova, E. S.; Kuchkina, N. V.

    2018-02-01

    The thermodynamic properties of amorphous polyphenylquinoxaline in the temperature range of 6 to 570 K are studied via precision adiabatic vacuum calorimetry and differential scanning calorimetry. The thermodynamic characteristics of glass transition are determined. Standard thermodynamic functions C ° p, H°( T) - H°(0), S°( T) - S°(0), and G°( T) - H°(0) in the range of T → 0 to 570 K and the standard entropy of formation at T = 298.15 K are calculated. The low-temperature ( T ≤ 50 K) heat capacity is analyzed using a multifractal model for the processing of heat capacity, fractal dimension D values are determined, and conclusions on the topological structure of the compound are drawn.

  2. Validation of the k- ω turbulence model for the thermal boundary layer profile of effusive cooled walls

    NASA Astrophysics Data System (ADS)

    Hink, R.

    2015-09-01

    The choice of materials for rocket chamber walls is limited by its thermal resistance. The thermal loads can be reduced substantially by the blowing out of gases through a porous surface. The k- ω-based turbulence models for computational fluid dynamic simulations are designed for smooth, non-permeable walls and have to be adjusted to account for the influence of injected fluids. Wilcox proposed therefore an extension for the k- ω turbulence model for the correct prediction of turbulent boundary layer velocity profiles. In this study, this extension is validated against experimental thermal boundary layer data from the Thermosciences Division of the Department of Mechanical Engineering from the Stanford University. All simulations are performed with a finite volume-based in-house code of the German Aerospace Center. Several simulations with different blowing settings were conducted and discussed in comparison to the results of the original model and in comparison to an additional roughness implementation. This study has permitted to understand that velocity profile corrections are necessary in contrast to additional roughness corrections to predict the correct thermal boundary layer profile of effusive cooled walls. Finally, this approach is applied to a two-dimensional simulation of an effusive cooled rocket chamber wall.

  3. What controls the local time extent of flux transfer events?

    NASA Astrophysics Data System (ADS)

    Milan, S. E.; Imber, S. M.; Carter, J. A.; Walach, M.-T.; Hubert, B.

    2016-02-01

    Flux transfer events (FTEs) are the manifestation of bursty and/or patchy magnetic reconnection at the magnetopause. We compare two sequences of the ionospheric signatures of flux transfer events observed in global auroral imagery and coherent ionospheric radar measurements. Both sequences were observed during very similar seasonal and interplanetary magnetic field (IMF) conditions, though with differing solar wind speed. A key observation is that the signatures differed considerably in their local time extent. The two periods are 26 August 1998, when the IMF had components BZ≈-10 nT and BY≈9 nT and the solar wind speed was VX≈650 km s-1, and 31 August 2005, IMF BZ≈-7 nT, BY≈17 nT, and VX≈380 km s-1. In the first case, the reconnection rate was estimated to be near 160 kV, and the FTE signatures extended across at least 7 h of magnetic local time (MLT) of the dayside polar cap boundary. In the second, a reconnection rate close to 80 kV was estimated, and the FTEs had a MLT extent of roughly 2 h. We discuss the ramifications of these differences for solar wind-magnetosphere coupling.

  4. The dual specificity PI3K/mTOR inhibitor PKI-587 displays efficacy against T-cell acute lymphoblastic leukemia (T-ALL).

    PubMed

    Gazi, Mohiuddin; Moharram, Sausan A; Marhäll, Alissa; Kazi, Julhash U

    2017-04-28

    Although significant improvements have been made in the treatment of acute lymphoblastic leukemia (ALL), there is a substantial subset of high-risk T-cell ALL (T-ALL) patients with relatively poor prognosis. Like in other leukemia types, alterations of the PI3K/mTOR pathway are predominant in ALL which is also responsible for treatment failure and relapse. In this study, we show that relapsed T-ALL patients display an enrichment of the PI3K/mTOR pathway. Using a panel of inhibitors targeting multiple components of the PI3K/mTOR pathway, we observed that the dual-specific PI3K/mTOR inhibitor PKI-587 was the most selective inhibitor for T-ALL cells dependent on the PI3K/mTOR pathway. Furthermore, we observed that PKI-587 blocked proliferation and colony formation of T-ALL cell lines. Additionally, PKI-587 selectively abrogated PI3K/mTOR signaling without affecting MAPK signaling both in in vitro and in vivo. Inhibition of the PI3K/mTOR pathway using PKI-587 delayed tumor progression, reduced tumor load and enhanced the survival rate in immune-deficient mouse xenograft models without inducing weight loss in the inhibitor treated mice. This preclinical study shows beneficial effects of PKI-587 on T-ALL that warrants further investigation in the clinical setting. Copyright © 2017 Elsevier B.V. All rights reserved.

  5. EBOLA Ag K-SeT rapid test: field evaluation in Sierra Leone.

    PubMed

    Colavita, F; Biava, M; Mertens, P; Gilleman, Q; Borlon, C; Delli Guanti, M; Petrocelli, A; Cataldi, G; Kamara, A T; Kamara, S A; Konneh, K; Vincenti, D; Castilletti, C; Abdurahman, S; Mirazimi, A; Capobianchi, M R; Ippolito, G; Miccio, R; Di Caro, A

    2018-06-01

    Efficient interruption of Ebola virus disease (EVD) transmission chains critically depends on reliable and fast laboratory diagnosis. We evaluated the performance of the EBOLA Virus Antigen Detection K-SeT (EBOLA Ag K-SeT), a new rapid diagnostic antigen test in field settings. The study was conducted in a field laboratory located in Freetown (Sierra Leone) by the Italian National Institute for Infectious Diseases 'L. Spallanzani' and the EMERGENCY Onlus NGO. The EBOLA Ag K-SeT was tested on 210 residual plasma samples (EVD prevalence 50%) from patients hospitalized at the EMERGENCY Ebola treatment center in Goderich (Freetown), comparing the results with quantitative real-time PCR. Overall, the sensitivity of EBOLA Ag K-SeT was 88.6% (95% confidence interval (CI), 82.5-94.7), and the corresponding specificity was 98.1% (95% CI, 95.5-100.7). The positive and negative predictive values were 97.9% (95% CI, 95.0-100.8) and 89.6% (95% CI, 84-95.2), respectively. The sensitivity strongly increased up to 98.7% (95% CI, 96.1-101.2) for those samples with high virus load (≥6.2 log RNA copies/mL). Our results suggest that EBOLA Ag K-SeT could represent a new effective diagnostic tool for EVD, meeting a need for resource-poor settings and rapid diagnosis for individuals with suspected EVD. Copyright © 2017 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

  6. Polar CAP Boundary Identification Using Redline Imaging Data

    NASA Astrophysics Data System (ADS)

    Spanswick, E.; Roy, E. A.; Gallardo-Lacourt, B.; Donovan, E.; Ridley, A. J.; Gou, D.

    2017-12-01

    The location of the polar cap boundary is typically detected using low-orbit satellite measurements in which the boundary is identified by its unique signature of a sharp decrease in energy and particle flux poleward of the auroral oval. A previous study based in optical data by Blanchard et al. [1995] suggested that a dramatic gradient in redline aurora may also be an indicator of the polar cap boundary. While this study has been heavily cited, it was only based on few events and its findings have largely gone uncontested. Since the Blanchard study, satellite instrumentation and available auroral data have improved significantly. Auroral imaging has moved well beyond the capabilities of the instrumentation in the previous study in terms of sensitivity and both spatial and temporal resolution. We now have access to decades of optical data from arrays spanning a huge spatial range; none of which was available previously. In this study we have used data from FAST and DMSP satellites in conjunction with the University of Calgary's Narrow-band All-sky Cameras for Auroral Monitoring (NASCAM) ground based auroral imaging array and the REdline Geospace Observatory (REGO) data to assess the viability of automated detection of the polar cap boundary. In our analysis we used redline (630nm) auroral signatures from the ground based imagers around the location of the polar cap boundary observed in satellite data. We have characterized the polar cap boundary luminosity and location using the redline auroral data during different geomagnetic conditions. Our results enable a new tool to automatically identify the polar cap boundary to reach a deeper understanding of the connection between polar cap location and auroral activity.

  7. Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes

    PubMed Central

    Dozmorov, Mikhail G

    2015-01-01

    Although age-associated gene expression and methylation changes have been reported throughout the literature, the unifying epigenomic principles of aging remain poorly understood. Recent explosion in availability and resolution of functional/regulatory genome annotation data (epigenomic data), such as that provided by the ENCODE and Roadmap Epigenomics projects, provides an opportunity for the identification of epigenomic mechanisms potentially altered by age-associated differentially methylated regions (aDMRs) and regulatory signatures in the promoters of age-associated genes (aGENs). In this study we found that aDMRs and aGENs identified in multiple independent studies share a common Polycomb Repressive Complex 2 signature marked by EZH2, SUZ12, CTCF binding sites, repressive H3K27me3, and activating H3K4me1 histone modification marks, and a “poised promoter” chromatin state. This signature is depleted in RNA Polymerase II-associated transcription factor binding sites, activating H3K79me2, H3K36me3, H3K27ac marks, and an “active promoter” chromatin state. The PRC2 signature was shown to be generally stable across cell types. When considering the directionality of methylation changes, we found the PRC2 signature to be associated with aDMRs hypermethylated with age, while hypomethylated aDMRs were associated with enhancers. In contrast, aGENs were associated with the PRC2 signature independently of the directionality of gene expression changes. In this study we demonstrate that the PRC2 signature is the common epigenomic context of genomic regions associated with hypermethylation and gene expression changes in aging. PMID:25880792

  8. The leptonic CP phase from T2(H)K and μ + decay at rest

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Evslin, Jarah; Ge, Shao-Feng; Hagiwara, Kaoru

    Combining v oscillations at T2K or T2HK withmore » $$\\bar{v}$$ oscillations from μ + decay at rest (DAR) allows a determination of the leptonic CP-violating phase . The degeneracies of this phase with θ 13 and θ 23 are broken and δ can be reliably distinguished from 180° - δ. In this study, we present the sensitivity to δ of T2(H)K together with a μ + DAR experiment using Super-K as a near detector and Hyper-K at the Tochibora site as a far detector.« less

  9. The leptonic CP phase from T2(H)K and μ + decay at rest

    DOE PAGES

    Evslin, Jarah; Ge, Shao-Feng; Hagiwara, Kaoru

    2016-02-22

    Combining v oscillations at T2K or T2HK withmore » $$\\bar{v}$$ oscillations from μ + decay at rest (DAR) allows a determination of the leptonic CP-violating phase . The degeneracies of this phase with θ 13 and θ 23 are broken and δ can be reliably distinguished from 180° - δ. In this study, we present the sensitivity to δ of T2(H)K together with a μ + DAR experiment using Super-K as a near detector and Hyper-K at the Tochibora site as a far detector.« less

  10. Secure Obfuscation for Encrypted Group Signatures

    PubMed Central

    Fan, Hongfei; Liu, Qin

    2015-01-01

    In recent years, group signature techniques are widely used in constructing privacy-preserving security schemes for various information systems. However, conventional techniques keep the schemes secure only in normal black-box attack contexts. In other words, these schemes suppose that (the implementation of) the group signature generation algorithm is running in a platform that is perfectly protected from various intrusions and attacks. As a complementary to existing studies, how to generate group signatures securely in a more austere security context, such as a white-box attack context, is studied in this paper. We use obfuscation as an approach to acquire a higher level of security. Concretely, we introduce a special group signature functionality-an encrypted group signature, and then provide an obfuscator for the proposed functionality. A series of new security notions for both the functionality and its obfuscator has been introduced. The most important one is the average-case secure virtual black-box property w.r.t. dependent oracles and restricted dependent oracles which captures the requirement of protecting the output of the proposed obfuscator against collision attacks from group members. The security notions fit for many other specialized obfuscators, such as obfuscators for identity-based signatures, threshold signatures and key-insulated signatures. Finally, the correctness and security of the proposed obfuscator have been proven. Thereby, the obfuscated encrypted group signature functionality can be applied to variants of privacy-preserving security schemes and enhance the security level of these schemes. PMID:26167686

  11. Results and perspectives from T2K on CPV in the neutrino sector

    NASA Astrophysics Data System (ADS)

    Dabrowska, A.

    2017-09-01

    In the T2K long-baseline neutrino oscilliaton experiment, the J-PARC facility is able to produce a high-intensity muon neutrino (antineutrino) beam, which is sent towards the near detector stations (0.28km) and the far detector Super-Kamiokande (295km). The change in the measured intensity and the composition of the beam are used to provide information about the oscillation parameters. A simultaneous analysis of the above neutrino and antineutrino mode data sets leads to the first ever sensitivity to the neutrino-sector CPV based on T2K data alone. Also, it gives the most precise T2K measurements of other neutrino oscillation parameters. The proposal of an extension of the currently approved T2K running from 7.8 × 10^{21} protons on target to 20 × 10^{21} protons on target and aiming at the initial observation of CPV with 3 σ or higher significance assuming maximum CP violation, is also presented.

  12. Recent NA61/SHINE measurements performed for the T2K experiment

    NASA Astrophysics Data System (ADS)

    2017-12-01

    The neutrino programme of the NA61/ SHINE experiment at the CERN SPS is aiming to deliver precise hadron production measurements for improving calculations of the initial neutrino beam flux in the long-baseline neutrino oscillation experiments. The first receiver of such measurements is the T2K neutrino oscillation project in Japan. New results on π±, K±, p, K0S and Λ production from the NA61/SHINE 2009 thin target data analyses with smaller statistical and systematic errors are discussed. They enable us to reduce further the flux uncertainties in T2K for neutrino and antineutrino beam mode. We also report on the first corrected π± results obtained for T2K replica target (a 90 cm long cylinder of 2.6 cm diameter, about 1.9λI). Up to 90% of the neutrino flux can be constrained by such measurements as compared to 60% for the thin target measurements that are sensitive only to primary hadron interactions.

  13. Neutrino oscillation physics potential of the T2K experiment

    NASA Astrophysics Data System (ADS)

    T2K Collaboration; Abe, K.; Adam, J.; Aihara, H.; Akiri, T.; Andreopoulos, C.; Aoki, S.; Ariga, A.; Assylbekov, S.; Autiero, D.; Barbi, M.; Barker, G. J.; Barr, G.; Bartet-Friburg, P.; Bass, M.; Batkiewicz, M.; Bay, F.; Berardi, V.; Berger, B. E.; Berkman, S.; Bhadra, S.; Blaszczyk, F. d. M.; Blondel, A.; Bojechko, C.; Bordoni, S.; Boyd, S. B.; Brailsford, D.; Bravar, A.; Bronner, C.; Buchanan, N.; Calland, R. G.; Caravaca Rodríguez, J.; Cartwright, S. L.; Castillo, R.; Catanesi, M. G.; Cervera, A.; Cherdack, D.; Christodoulou, G.; Clifton, A.; Coleman, J.; Coleman, S. J.; Collazuol, G.; Connolly, K.; Cremonesi, L.; Dabrowska, A.; Danko, I.; Das, R.; Davis, S.; de Perio, P.; de Rosa, G.; Dealtry, T.; Dennis, S. R.; Densham, C.; Dewhurst, D.; Di Lodovico, F.; Di Luise, S.; Drapier, O.; Duboyski, T.; Duffy, K.; Dumarchez, J.; Dytman, S.; Dziewiecki, M.; Emery-Schrenk, S.; Ereditato, A.; Escudero, L.; Feusels, T.; Finch, A. J.; Fiorentini, G. A.; Friend, M.; Fujii, Y.; Fukuda, Y.; Furmanski, A. P.; Galymov, V.; Garcia, A.; Giffin, S.; Giganti, C.; Gilje, K.; Goeldi, D.; Golan, T.; Gonin, M.; Grant, N.; Gudin, D.; Hadley, D. R.; Haegel, L.; Haesler, A.; Haigh, M. D.; Hamilton, P.; Hansen, D.; Hara, T.; Hartz, M.; Hasegawa, T.; Hastings, N. C.; Hayashino, T.; Hayato, Y.; Hearty, C.; Helmer, R. L.; Hierholzer, M.; Hignight, J.; Hillairet, A.; Himmel, A.; Hiraki, T.; Hirota, S.; Holeczek, J.; Horikawa, S.; Huang, K.; Ichikawa, A. K.; Ieki, K.; Ieva, M.; Ikeda, M.; Imber, J.; Insler, J.; Irvine, T. J.; Ishida, T.; Ishii, T.; Iwai, E.; Iwamoto, K.; Iyogi, K.; Izmaylov, A.; Jacob, A.; Jamieson, B.; Johnson, R. A.; Johnson, S.; Jo, J. H.; Jonsson, P.; Jung, C. K.; Kabirnezhad, M.; Kaboth, A. C.; Kajita, T.; Kakuno, H.; Kameda, J.; Kanazawa, Y.; Karlen, D.; Karpikov, I.; Katori, T.; Kearns, E.; Khabibullin, M.; Khotjantsev, A.; Kielczewska, D.; Kikawa, T.; Kilinski, A.; Kim, J.; King, S.; Kisiel, J.; Kitching, P.; Kobayashi, T.; Koch, L.; Koga, T.; Kolaceke, A.; Konaka, A.; Kormos, L. L.; Korzenev, A.; Koshio, Y.; Kropp, W.; Kubo, H.; Kudenko, Y.; Kurjata, R.; Kutter, T.; Lagoda, J.; Laihem, K.; Lamont, I.; Larkin, E.; Laveder, M.; Lawe, M.; Lazos, M.; Lindner, T.; Lister, C.; Litchfield, R. P.; Longhin, A.; Lopez, J. P.; Ludovici, L.; Magaletti, L.; Mahn, K.; Malek, M.; Manly, S.; Marino, A. D.; Marteau, J.; Martin, J. F.; Martins, P.; Martynenko, S.; Maruyama, T.; Matveev, V.; Mavrokoridis, K.; Mazzucato, E.; McCarthy, M.; McCauley, N.; McFarland, K. S.; McGrew, C.; Mefodiev, A.; Metelko, C.; Mezzetto, M.; Mijakowski, P.; Miller, C. A.; Minamino, A.; Mineev, O.; Missert, A.; Miura, M.; Moriyama, S.; Mueller, Th. A.; Murakami, A.; Murdoch, M.; Murphy, S.; Myslik, J.; Nakadaira, T.; Nakahata, M.; Nakamura, K. G.; Nakamura, K.; Nakayama, S.; Nakaya, T.; Nakayoshi, K.; Nantais, C.; Nielsen, C.; Nirkko, M.; Nishikawa, K.; Nishimura, Y.; Nowak, J.; O'Keeffe, H. M.; Ohta, R.; Okumura, K.; Okusawa, T.; Oryszczak, W.; Oser, S. M.; Ovsyannikova, T.; Owen, R. A.; Oyama, Y.; Palladino, V.; Palomino, J. L.; Paolone, V.; Payne, D.; Perevozchikov, O.; Perkin, J. D.; Petrov, Y.; Pickard, L.; Pinzon Guerra, E. S.; Pistillo, C.; Plonski, P.; Poplawska, E.; Popov, B.; Posiadala-Zezula, M.; Poutissou, J.-M.; Poutissou, R.; Przewlocki, P.; Quilain, B.; Radicioni, E.; Ratoff, P. N.; Ravonel, M.; Rayner, M. A. M.; Redij, A.; Reeves, M.; Reinherz-Aronis, E.; Riccio, C.; Rodrigues, P. A.; Rojas, P.; Rondio, E.; Roth, S.; Rubbia, A.; Ruterbories, D.; Sacco, R.; Sakashita, K.; Sánchez, F.; Sato, F.; Scantamburlo, E.; Scholberg, K.; Schoppmann, S.; Schwehr, J.; Scott, M.; Seiya, Y.; Sekiguchi, T.; Sekiya, H.; Sgalaberna, D.; Shah, R.; Shaker, F.; Shiozawa, M.; Short, S.; Shustrov, Y.; Sinclair, P.; Smith, B.; Smy, M.; Sobczyk, J. T.; Sobel, H.; Sorel, M.; Southwell, L.; Stamoulis, P.; Steinmann, J.; Still, B.; Suda, Y.; Suzuki, A.; Suzuki, K.; Suzuki, S. Y.; Suzuki, Y.; Tacik, R.; Tada, M.; Takahashi, S.; Takeda, A.; Takeuchi, Y.; Tanaka, H. K.; Tanaka, H. A.; Tanaka, M. M.; Terhorst, D.; Terri, R.; Thompson, L. F.; Thorley, A.; Tobayama, S.; Toki, W.; Tomura, T.; Totsuka, Y.; Touramanis, C.; Tsukamoto, T.; Tzanov, M.; Uchida, Y.; Vacheret, A.; Vagins, M.; Vasseur, G.; Wachala, T.; Waldron, A. V.; Wakamatsu, K.; Walter, C. W.; Wark, D.; Warzycha, W.; Wascko, M. O.; Weber, A.; Wendell, R.; Wilkes, R. J.; Wilking, M. J.; Wilkinson, C.; Williamson, Z.; Wilson, J. R.; Wilson, R. J.; Wongjirad, T.; Yamada, Y.; Yamamoto, K.; Yanagisawa, C.; Yano, T.; Yen, S.; Yershov, N.; Yokoyama, M.; Yoshida, K.; Yuan, T.; Yu, M.; Zalewska, A.; Zalipska, J.; Zambelli, L.; Zaremba, K.; Ziembicki, M.; Zimmerman, E. D.; Zito, M.; Żmuda, J.

    2015-04-01

    The observation of the recent electron neutrino appearance in a muon neutrino beam and the high-precision measurement of the mixing angle θ _{13} have led to a re-evaluation of the physics potential of the T2K long-baseline neutrino oscillation experiment. Sensitivities are explored for CP violation in neutrinos, non-maximal sin ^22θ _{23}, the octant of θ _{23}, and the mass hierarchy, in addition to the measurements of δ _{CP}, sin ^2θ _{23}, and Δ m^2_{32}, for various combinations of ν-mode and bar {ν }-mode data-taking. With an exposure of 7.8× 10^{21} protons-on-target, T2K can achieve 1σ resolution of 0.050 (0.054) on sin ^2θ _{23} and 0.040 (0.045)× 10^{-3} {eV}^2 on Δ m^2_{32} for 100% (50%) neutrino beam mode running assuming sin ^2θ _{23}=0.5 and Δ m^2_{32} = 2.4× 10^{-3} eV^2. T2K will have sensitivity to the CP-violating phase δ _{CP} at 90% C.L. or better over a significant range. For example, if sin ^22θ _{23} is maximal (i.e. θ _{23}=45°) the range is -115° < δ _{CP}< -60° for normal hierarchy and +50° < δ _{CP}< +130° for inverted hierarchy. When T2K data is combined with data from the NOνA experiment, the region of oscillation parameter space where there is sensitivity to observe a non-zero δ _{CP} is substantially increased compared to if each experiment is analyzed alone.

  14. The Accretion Disk and the Boundary Layer of the Symbiotic Recurrent Nova T Corona Borealis

    NASA Astrophysics Data System (ADS)

    Mukai, Koji; Luna, Gerardo; Nelson, Thomas; Sokoloski, Jennifer L.; Lucy, Adrian; Nuñez, Natalia

    2017-08-01

    T Corona Borealis is one of four known Galactic recurrent symbiotic novae, red giant-white dwarf binaries from which multiple thermonuclear runaway (TNR) events, or nova eruptions, have been observed. TNR requires high pressure at the base of the accreted envelope, and a recurrence time of less than a century almost certainly requires both high white dwarf mass and high accretion rate. The eruptions of T CrB were observed in 1866 and 1946; if the 80 year interval is typical, the next eruption would be expected within the next decade or two. Optical observations show that T CrB has entered a super-active state starting in 2015, similar to that seen in 1938, 8 years before the last eruption. In quiescence, T CrB is a known, bright hard X-ray source that has been detected in the Swift/BAT all-sky survey. Here we present the result of our NuSTAR observation of T CrB in 2015, when it had started to brighten but had not yet reached the peak of the super-active state. We were able to fit the spectrum with an absorbed cooling flow model with reflection, with a reflection amplitude of 1.0. We also present recent Swift and XMM-Newton observations during the peak of the super-active state, when T CrB had faded dramatically in the BAT band. T CrB is found to be much more luminous in the UV, while the X-ray spectrum became complex including a soft, optically thick component. We present our interpretation of the overall variability as due to instability of a large disk, and of the X-rays as due to emission from the boundary layer. In our view, the NuSTAR observation was performed when the boundary layer was optically thin, and the reflection was only from the white dwarf surface that subtended 2π steradian of the sky as seen from the emission region. With these assumptions, we infer the white dwarf in the T CrB system to have a mass of ~1.2 Msun. During the very active state, the boundary layer had turned partially optically thick and produced the soft X-ray component, while

  15. Accelerating free breathing myocardial perfusion MRI using multi coil radial k - t SLR

    NASA Astrophysics Data System (ADS)

    Goud Lingala, Sajan; DiBella, Edward; Adluru, Ganesh; McGann, Christopher; Jacob, Mathews

    2013-10-01

    The clinical utility of myocardial perfusion MR imaging (MPI) is often restricted by the inability of current acquisition schemes to simultaneously achieve high spatio-temporal resolution, good volume coverage, and high signal to noise ratio. Moreover, many subjects often find it difficult to hold their breath for sufficiently long durations making it difficult to obtain reliable MPI data. Accelerated acquisition of free breathing MPI data can overcome some of these challenges. Recently, an algorithm termed as k - t SLR has been proposed to accelerate dynamic MRI by exploiting sparsity and low rank properties of dynamic MRI data. The main focus of this paper is to further improve k - t SLR and demonstrate its utility in considerably accelerating free breathing MPI. We extend its previous implementation to account for multi-coil radial MPI acquisitions. We perform k - t sampling experiments to compare different radial trajectories and determine the best sampling pattern. We also introduce a novel augmented Lagrangian framework to considerably improve the algorithm’s convergence rate. The proposed algorithm is validated using free breathing rest and stress radial perfusion data sets from two normal subjects and one patient with ischemia. k - t SLR was observed to provide faithful reconstructions at high acceleration levels with minimal artifacts compared to existing MPI acceleration schemes such as spatio-temporal constrained reconstruction and k - t SPARSE/SENSE.

  16. Accelerating free breathing myocardial perfusion MRI using multi coil radial k-t SLR

    PubMed Central

    Lingala, Sajan Goud; DiBella, Edward; Adluru, Ganesh; McGann, Christopher; Jacob, Mathews

    2013-01-01

    The clinical utility of myocardial perfusion MR imaging (MPI) is often restricted by the inability of current acquisition schemes to simultaneously achieve high spatio-temporal resolution, good volume coverage, and high signal to noise ratio. Moreover, many subjects often find it difficult to hold their breath for sufficiently long durations making it difficult to obtain reliable MPI data. Accelerated acquisition of free breathing MPI data can overcome some of these challenges. Recently, an algorithm termed as kt SLR has been proposed to accelerate dynamic MRI by exploiting sparsity and low rank properties of dynamic MRI data. The main focus of this paper is to further improve kt SLR and demonstrate its utility in considerably accelerating free breathing MPI. We extend its previous implementation to account for multi-coil radial MPI acquisitions. We perform kt sampling experiments to compare different radial trajectories and determine the best sampling pattern. We also introduce a novel augmented Lagrangian framework to considerably improve the algorithm's convergence rate. The proposed algorithm is validated using free breathing rest and stress radial perfusion data sets from two normal subjects and one patient with ischemia. kt SLR was observed to provide faithful reconstructions at high acceleration levels with minimal artifacts compared to existing MPI acceleration schemes such as spatio-temporal constrained reconstruction (STCR) and kt SPARSE/SENSE. PMID:24077063

  17. The Cretaceous-Tertiary boundary interval in Badlands National Park, South Dakota

    USGS Publications Warehouse

    Stoffer, Philip W.; Messina, Paula; Chamberlain, John A.; Terry, Dennis O.

    2001-01-01

    A marine K-T boundary interval has been identified throughout the Badlands National Park region of South Dakota. Data from marine sediments suggest that deposits from two asteroid impacts (one close, one far away) may be preserved in the Badlands. These impact-generated deposits may represent late Maestrichtian events or possibly the terminal K-T event. Interpretation is supported by paleontological correlation, sequence stratigraphy, magnetostratigraphy, and strontium isotope geochronology. This research is founded on nearly a decade of NPS approved field work in Badlands National Park and a foundation of previously published data and interpretations. The K-T boundary occurs within or near the base of a stratigraphic interval referred to as the "Interior Zone." We interpret the stratigraphy of the Interior Zone as a series of distinct, recognizable lithologic members and units from oldest to youngest, an upper weathered interval of the Elk Butte Member of the Pierre Shale (early late Maestrichtian), a complete (albeit condensed) interval of Fox Hill Formation, a pedogenically altered K-T Boundary "Disturbed Zone," and a generally unresolved sequence of marine to marginal marine units ranging in age from possibly latest Maestrichtian to late Paleocene (the "Yellow Mounds"), that underlie a basal red clay unit (the late Eocene overbank channel facies of the Chamberlain Pass Formation at the base of the White River Group). Within this sequence is a series of unconformities that all display some degree of subaerial weathering and erosion. The dating of marine fossils above and below these unconformities are in line with generally accepted global sea-level changes recognized for the late Campanian through early Eocene. Within the greater framework of regional geology, these findings support that the Western Interior Seaway and subsequent Cannonball Seaway were dependently linked to the changing base-level controlled by sea-level of the global ocean through the Gulf of

  18. Distinctive CD8+ T cell and MHC class I signatures in polycythemia vera patients.

    PubMed

    Cardoso, Elsa M; Esgalhado, André J; Patrão, Luís; Santos, Mónica; Neves, Vasco Pinto; Martinez, Jorge; Patto, Maria Assunção Vaz; Silva, Helena; Arosa, Fernando A

    2018-05-22

    Polycythemia vera (PV) is a myeloproliferative neoplasm characterized by overproduction of red blood cells. We have performed a comprehensive characterization of blood immune cells for expression of naïve and memory receptors as well as β 2 m-associated and β 2 m-free MHC class I heavy chains, also known as closed and open conformers, respectively, in PV patients and age-matched controls (CTR). We show that the peripheral CD3 + CD8 + T cell pool in PV patients is clearly divided into two discrete populations, a more granular CD3 + CD8 high T cell population enriched in effector-memory CD45RA + T cells (CD8 + TEMRA) when compared to CTR (P < 0.001), and a less granular CD3 + CD8 int T cell population that is completely absent in the CTR group (78 vs. 0%, P < 0.001) and is a mixture of naïve (CD8 + T N ) and CD8 + TEMRA cells expressing intermediate levels of CD28, i.e., CD3 + CD8 int CD28 int . While the percentage of CD3 + CD8 int TN cells correlated positively with the number of erythrocytes, the percentage of CD3 + CD8 int TEMRA correlated negatively with the number of platelets. Finally, we report that PV patients' lymphocytes and monocytes display lower levels of closed (W6/32 + ) MHC-I conformers at the cell surface while exhibiting increased amounts of open (HC-10 + ) MHC-I conformers. The implications of this distinctive immune signature are discussed.

  19. Mineralogy of Cretaceous/Tertiary boundary clays in the Chicxulub structure in northern Yucatan

    NASA Technical Reports Server (NTRS)

    Ming, D. W.; Sharpton, Virgil L.; Schuraytz, B. C.

    1991-01-01

    The Cretaceous/Tertiary (K/T) boundary clay layer is thought to be derived from ejecta material from meteorite impact, based on the anomalous concentrations of noble metals in the layer. Because of recent findings of a half-meter thick ejecta deposit at the K/T boundary in Haiti, efforts have focused on locating a large impact feature in the Caribbean and the Gulf of Mexico. One of the leading candidates for the site of a large impact is the Chicxulub structure located on the northern Yucatan Peninsula in Mexico. The Chicxulub structure is a subsurface zone of upper Cretaceous igneous rocks, carbonates, and breccias. The structure has been interpreted to be a 200 km diameter; however, there is some question to the size of the structure or to the fact that it even is an impact feature. Little is known about the mineralogy of this structure; the objective of this study was to determine the clay mineralogy of core samples from within the Chicxulub structure.

  20. Genome Analysis and Physiological Comparison of Alicycliphilus denitrificans Strains BC and K601T

    PubMed Central

    Talarico Saia, Flávia; Weelink, Sander A. B.; Goodwin, Lynne A.; Daligault, Hajnalka E.; Bruce, David C.; Detter, John C.; Tapia, Roxanne; Han, Cliff S.; Land, Miriam L.; Hauser, Loren J.; Langenhoff, Alette A. M.; Gerritse, Jan; van Berkel, Willem J. H.; Pieper, Dietmar H.; Junca, Howard; Smidt, Hauke; Schraa, Gosse; Davids, Mark; Schaap, Peter J.; Plugge, Caroline M.; Stams, Alfons J. M.

    2013-01-01

    The genomes of the Betaproteobacteria Alicycliphilus denitrificans strains BC and K601T have been sequenced to get insight into the physiology of the two strains. Strain BC degrades benzene with chlorate as electron acceptor. The cyclohexanol-degrading denitrifying strain K601T is not able to use chlorate as electron acceptor, while strain BC cannot degrade cyclohexanol. The 16S rRNA sequences of strains BC and K601T are identical and the fatty acid methyl ester patterns of the strains are similar. Basic Local Alignment Search Tool (BLAST) analysis of predicted open reading frames of both strains showed most hits with Acidovorax sp. JS42, a bacterium that degrades nitro-aromatics. The genomes include strain-specific plasmids (pAlide201 in strain K601T and pAlide01 and pAlide02 in strain BC). Key genes of chlorate reduction in strain BC were located on a 120 kb megaplasmid (pAlide01), which was absent in strain K601T. Genes involved in cyclohexanol degradation were only found in strain K601T. Benzene and toluene are degraded via oxygenase-mediated pathways in both strains. Genes involved in the meta-cleavage pathway of catechol are present in the genomes of both strains. Strain BC also contains all genes of the ortho-cleavage pathway. The large number of mono- and dioxygenase genes in the genomes suggests that the two strains have a broader substrate range than known thus far. PMID:23825601

  1. Primary Mineralogical and Chemical Characteristics of the Major K/T and Late Eocene Impact Deposits

    NASA Technical Reports Server (NTRS)

    Kyte, Frank T.

    2004-01-01

    Three well-characterized, distal impact deposits at the WT boundary and in upper Eocene sediments serve as a baseline for understanding other proposed impact deposits. All contain abundant spherules, evidence of shock metamorphism, and the largest have significant extraterrestrial components (ETCs). The K/T and the Eocene cpx-spherule (cpxS) deposits are global - likely from the events that produced the 180 km Chicxulub and 100 km Popigai craters. The Eocene North American microtektite (NAM) deposit is regional and likely from the event that produced the 45 km Chesapeake Bay crater. These deposits all contain abundant spherules formed from both shock-melted target and mixtures of target and projectile in the ejecta plume. Spherules constitute most of the mass of the distal ejecta. K/T spherules in regional deposits around the Gulf of Mexico are from low-velocity, target-rich ejecta. These can be a few mm in size and form deposits 10s of cm thick. Globally deposited KIT spherules from the plume (typically a few hundred micron size) are both target- and projectile-rich. When well preserved, the global deposits are 3 mm thick. Eocene cpxS deposits are similar to distal K/T with both target- and projectile-rich varieties (Le., glassy microtektite, and cpx spherules). They are smaller on average than WT spherules, concentrated in the 125-250 micron and smaller fractions. They are invariably bioturbated, but the initial deposit was probably less than 1 mm thick. The NAM are composed entirely of target-rich glass. They are similar in size to the cpxS. Size is an important criterion for distal ejecta because droplet size in the impact plume is proportional to the energy of the impact. Both the JUT and cpxS deposits are characterized by well-defined ETCs, commonly measured by Ir. The total Ir deposited is about 55 ng per square cm in WT sediments, and about 11 ng for the cpxS layer. This 5/1 proportion in Ir is generally consistent with the approx.1.8/1 ratio in crater

  2. Field guide to the continental Cretaceous-Tertiary boundary in the Raton basin, Colorado and New Mexico

    USGS Publications Warehouse

    Pillmore, C.L.; Nichols, D.J.; ,

    1999-01-01

    This guide consists of three general sections: an introduction that includes discussions of Raton basin stratigraphy and the Cretaceous Tertiary (K-T) boundary; descriptions of the geology along the route from Denver, Colorado, to Raton, New Mexico; and descriptions of several K-T sites in the Raton basin. Much of the information is from previous articles and field guides by the authors together with R. M. Flores and from road logs co-authored with Glenn R. Scott, both of the U.S.Geological Survey.

  3. Extraction of t slopes from experimental γ p →K+Λ and γ p →K+Σ0 cross section data

    NASA Astrophysics Data System (ADS)

    Freese, Adam; Puentes, Daniel; Adhikari, Shankar; Badui, Rafael; Guo, Lei; Raue, Brian

    2017-10-01

    We analyze recent K+ meson photoproduction data from the CLAS collaboration for the reactions γ p →K+Λ and γ p →K+Σ0 , fitting measured forward-angle differential cross sections to the form A eB t . We develop a quantitative scheme for determining the kinematic region where the fit is to be done, and, from the extracted t -slope B , determine whether single-Reggeon exchange can explain the production mechanism. We find that, in the region 5 K+Λ channel can be explained by single K+ Reggeon exchange, but the K+Σ0 production channel cannot. We verify these conclusions by fitting the data to a differential cross section produced by the interfering sum of two exponential amplitudes.

  4. Can specific transcriptional regulators assemble a universal cancer signature?

    NASA Astrophysics Data System (ADS)

    Roy, Janine; Isik, Zerrin; Pilarsky, Christian; Schroeder, Michael

    2013-10-01

    Recently, there is a lot of interest in using biomarker signatures derived from gene expression data to predict cancer progression. We assembled signatures of 25 published datasets covering 13 types of cancers. How do these signatures compare with each other? On one hand signatures answering the same biological question should overlap, whereas signatures predicting different cancer types should differ. On the other hand, there could also be a Universal Cancer Signature that is predictive independently of the cancer type. Initially, we generate signatures for all datasets using classical approaches such as t-test and fold change and then, we explore signatures resulting from a network-based method, that applies the random surfer model of Google's PageRank algorithm. We show that the signatures as published by the authors and the signatures generated with classical methods do not overlap - not even for the same cancer type - whereas the network-based signatures strongly overlap. Selecting 10 out of 37 universal cancer genes gives the optimal prediction for all cancers thus taking a first step towards a Universal Cancer Signature. We furthermore analyze and discuss the involved genes in terms of the Hallmarks of cancer and in particular single out SP1, JUN/FOS and NFKB1 and examine their specific role in cancer progression.

  5. Mirage: a visible signature evaluation tool

    NASA Astrophysics Data System (ADS)

    Culpepper, Joanne B.; Meehan, Alaster J.; Shao, Q. T.; Richards, Noel

    2017-10-01

    This paper presents the Mirage visible signature evaluation tool, designed to provide a visible signature evaluation capability that will appropriately reflect the effect of scene content on the detectability of targets, providing a capability to assess visible signatures in the context of the environment. Mirage is based on a parametric evaluation of input images, assessing the value of a range of image metrics and combining them using the boosted decision tree machine learning method to produce target detectability estimates. It has been developed using experimental data from photosimulation experiments, where human observers search for vehicle targets in a variety of digital images. The images used for tool development are synthetic (computer generated) images, showing vehicles in many different scenes and exhibiting a wide variation in scene content. A preliminary validation has been performed using k-fold cross validation, where 90% of the image data set was used for training and 10% of the image data set was used for testing. The results of the k-fold validation from 200 independent tests show a prediction accuracy between Mirage predictions of detection probability and observed probability of detection of r(262) = 0:63, p < 0:0001 (Pearson correlation) and a MAE = 0:21 (mean absolute error).

  6. Secure and Efficient Signature Scheme Based on NTRU for Mobile Payment

    NASA Astrophysics Data System (ADS)

    Xia, Yunhao; You, Lirong; Sun, Zhe; Sun, Zhixin

    2017-10-01

    Mobile payment becomes more and more popular, however the traditional public-key encryption algorithm has higher requirements for hardware which is not suitable for mobile terminals of limited computing resources. In addition, these public-key encryption algorithms do not have the ability of anti-quantum computing. This paper researches public-key encryption algorithm NTRU for quantum computation through analyzing the influence of parameter q and k on the probability of generating reasonable signature value. Two methods are proposed to improve the probability of generating reasonable signature value. Firstly, increase the value of parameter q. Secondly, add the authentication condition that meet the reasonable signature requirements during the signature phase. Experimental results show that the proposed signature scheme can realize the zero leakage of the private key information of the signature value, and increase the probability of generating the reasonable signature value. It also improve rate of the signature, and avoid the invalid signature propagation in the network, but the scheme for parameter selection has certain restrictions.

  7. Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601T

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Oosterkamp, Margreet J.; Veuskens, Teun; Saia, Flavia Talarico

    2013-01-01

    The genomes of the Betaproteobacteria Alicycliphilus denitrificans strains BC and K601T have been sequenced to get insight into the physiology of the two strains. Strain BC degrades benzene with chlorate as electron acceptor. The cyclohexanol-degrading denitrifying strain K601T is not able to use chlorate as electron acceptor, while strain BC cannot degrade cyclohexanol. The 16S rRNA sequences of strains BC and K601T are identical and the fatty acid methyl ester patterns of the strains are similar. Basic Local Alignment Search Tool (BLAST) analysis of predicted open reading frames of both strains showed most hits with Acidovorax sp. JS42, a bacteriummore » that degrades nitro-aromatics. The genomes include strain-specific plasmids (pAlide201 in strain K601T and pAlide01 and pAlide02 in strain BC). Key genes of chlorate reduction in strain BC were located on a 120 kb megaplasmid (pAlide01), which was absent in strain K601T. Genes involved in cyclohexanol degradation were only found in strain K601T. Benzene and toluene are degraded via oxygenase-mediated pathways in both strains. Genes involved in the meta-cleavage pathway of catechol are present in the genomes of both strains. Strain BC also contains all genes of the ortho-cleavage pathway. The large number of mono- and dioxygenase genes in the genomes suggests that the two strains have a broader substrate range than known thus far.« less

  8. Role of the K(Ca)3.1 K+ channel in auricular lymph node CD4+ T-lymphocyte function of the delayed-type hypersensitivity model.

    PubMed

    Ohya, Susumu; Nakamura, Erina; Horiba, Sayuri; Kito, Hiroaki; Matsui, Miki; Yamamura, Hisao; Imaizumi, Yuji

    2013-07-01

    The intermediate-conductance Ca(2+)-activated K(+) channel (K(Ca)3.1) modulates the Ca(2+) response through the control of the membrane potential in the immune system. We investigated the role of K(Ca)3.1 on the pathogenesis of delayed-type hypersensitivity (DTH) in auricular lymph node (ALN) CD4(+) T-lymphocytes of oxazolone (Ox)-induced DTH model mice. The expression patterns of K(Ca)3.1 and its possible transcriptional regulators were compared among ALN T-lymphocytes of three groups [non-sensitized (Ox-/-), Ox-sensitized, but non-challenged (Ox+/-) and Ox-sensitized and -challenged (Ox+/+)] using real-time polymerase chain reaction, Western blotting and flow cytometry. KCa 3.1 activity was measured by whole-cell patch clamp and the voltage-sensitive dye imaging. The effects of K(Ca)3.1 blockade were examined by the administration of selective K(Ca)3.1 blockers. Significant up-regulation of K(Ca)3.1a was observed in CD4(+) T-lymphocytes of Ox+/- and Ox+/+, without any evident changes in the expression of the dominant-negative form, K(Ca)3.1b. Negatively correlated with this, the repressor element-1 silencing transcription factor (REST) was significantly down-regulated. Pharmacological blockade of K(Ca)3.1 resulted in an accumulation of the CD4(+) T-lymphocytes of Ox+/+ at the G0/G1 phase of the cell cycle, and also significantly recovered not only the pathogenesis of DTH, but also the changes in the K(Ca)3.1 expression and activity in the CD4(+) T-lymphocytes of Ox+/- and Ox+/+. The up-regulation of K(Ca)3.1a in conjunction with the down-regulation of REST may be involved in CD4(+) T-lymphocyte proliferation in the ALNs of DTH model mice; and K(Ca)3.1 may be an important target for therapeutic intervention in allergy diseases such as DTH. © 2013 The British Pharmacological Society.

  9. Major wildfires at the Cretaceous-Tertiary boundary

    NASA Technical Reports Server (NTRS)

    Gilmour, Iain; Wolbach, Wendy S.; Anders, Edward

    1989-01-01

    K-T boundary (KTB) clays from five sites are enriched in soot and charcoal by factors of 100-1000 over Cretaceous levels, apparently due to a global fire. The soot profile nearly coincides with the Ir profile, implying that the fire was triggered by the impact. Much or all of the fuel was biomass, as indicated by the presence of retene and by the C isotopic composition. The amount of elemental C at the KTB (0.012 g/sq cm) is very large, and requires either that most of the Cretaceous biomass burned down or that the soot yield was higher than in small fires. At undisturbed sites, soot correlates tightly with Ir, As, Sb, and Zn. Apparently soot and Ir-bearing ejecta particles coagulated in the stratosphere and then scavenged additional chalcophiles from the hydrosphere. In view of this coagulation, the K-T fire would only slightly prolong the period of darkness and cold caused by impact ejecta.

  10. Extracellular MicroRNA Signature of Human Helper T Cell Subsets in Health and Autoimmunity.

    PubMed

    Torri, Anna; Carpi, Donatella; Bulgheroni, Elisabetta; Crosti, Maria-Cristina; Moro, Monica; Gruarin, Paola; Rossi, Riccardo L; Rossetti, Grazisa; Di Vizio, Dolores; Hoxha, Mirjam; Bollati, Valentina; Gagliani, Cristina; Tacchetti, Carlo; Paroni, Moira; Geginat, Jens; Corti, Laura; Venegoni, Luigia; Berti, Emilio; Pagani, Massimiliano; Matarese, Giuseppe; Abrignani, Sergio; de Candia, Paola

    2017-02-17

    Upon T cell receptor stimulation, CD4 + T helper (Th) lymphocytes release extracellular vesicles (EVs) containing microRNAs. However, no data are available on whether human CD4 + T cell subsets release EVs containing different pattern of microRNAs. The present work aimed at filling this gap by assessing the microRNA content in EVs released upon in vitro T cell receptor stimulation of Th1, Th17, and T regulatory (Treg) cells. Our results indicate that EVs released by Treg cells are significantly different compared with those released by the other subsets. In particular, miR-146a-5p, miR-150-5p, and miR-21-5p are enriched, whereas miR-106a-5p, miR-155-5p, and miR-19a-3p are depleted in Treg-derived EVs. The in vitro identified EV-associated microRNA signature was increased in serum of autoimmune patients with psoriasis and returned to healthy levels upon effective treatment with etanercept, a biological drug targeting the TNF pathway and suppressing inflammation. Moreover, Gene Set Enrichment Analysis showed an over-representation of genes relevant for T cell activation, such as CD40L, IRAK1, IRAK2, STAT1, and c-Myb in the list of validated targets of Treg-derived EV miRNAs. At functional level, Treg-derived (but not Th1/Th17-derived) EVs inhibited CD4 + T cell proliferation and suppressed two relevant targets of miR-146a-5p: STAT1 and IRAK2. In conclusion, our work identified the miRNAs specifically released by different human CD4 + T cell subsets and started to unveil the potential use of their quantity in human serum to mark the pathological elicitation of these cells in vivo and their biological effect in cell to cell communication during the adaptive immune response. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  11. Extracellular MicroRNA Signature of Human Helper T Cell Subsets in Health and Autoimmunity*

    PubMed Central

    Torri, Anna; Carpi, Donatella; Bulgheroni, Elisabetta; Crosti, Maria-Cristina; Moro, Monica; Gruarin, Paola; Rossi, Riccardo L.; Rossetti, Grazisa; Di Vizio, Dolores; Hoxha, Mirjam; Bollati, Valentina; Gagliani, Cristina; Tacchetti, Carlo; Paroni, Moira; Geginat, Jens; Corti, Laura; Venegoni, Luigia; Berti, Emilio; Pagani, Massimiliano; Matarese, Giuseppe; Abrignani, Sergio; de Candia, Paola

    2017-01-01

    Upon T cell receptor stimulation, CD4+ T helper (Th) lymphocytes release extracellular vesicles (EVs) containing microRNAs. However, no data are available on whether human CD4+ T cell subsets release EVs containing different pattern of microRNAs. The present work aimed at filling this gap by assessing the microRNA content in EVs released upon in vitro T cell receptor stimulation of Th1, Th17, and T regulatory (Treg) cells. Our results indicate that EVs released by Treg cells are significantly different compared with those released by the other subsets. In particular, miR-146a-5p, miR-150-5p, and miR-21-5p are enriched, whereas miR-106a-5p, miR-155-5p, and miR-19a-3p are depleted in Treg-derived EVs. The in vitro identified EV-associated microRNA signature was increased in serum of autoimmune patients with psoriasis and returned to healthy levels upon effective treatment with etanercept, a biological drug targeting the TNF pathway and suppressing inflammation. Moreover, Gene Set Enrichment Analysis showed an over-representation of genes relevant for T cell activation, such as CD40L, IRAK1, IRAK2, STAT1, and c-Myb in the list of validated targets of Treg-derived EV miRNAs. At functional level, Treg-derived (but not Th1/Th17-derived) EVs inhibited CD4+ T cell proliferation and suppressed two relevant targets of miR-146a-5p: STAT1 and IRAK2. In conclusion, our work identified the miRNAs specifically released by different human CD4+ T cell subsets and started to unveil the potential use of their quantity in human serum to mark the pathological elicitation of these cells in vivo and their biological effect in cell to cell communication during the adaptive immune response. PMID:28077577

  12. Science of Land Target Spectral Signatures

    DTIC Science & Technology

    2013-04-03

    F. Meriaudeau, T. Downey , A. Wig , A. Passian, M. Buncick, T.L. Ferrell, Fiber optic sensor based on gold island plasmon resonance , Sensors and...processing, detection algorithms, sensor fusion, spectral signature modeling Dr. J. Michael Cathcart Georgia Tech Research Corporation Office of...target detection and sensor fusion. The phenomenology research continued to focus on spectroscopic soil measurements, optical property analyses, field

  13. Longitudinal changes in young children’s 0–100 to 0–1000 number-line error signatures

    PubMed Central

    Reeve, Robert A.; Paul, Jacob M.; Butterworth, Brian

    2015-01-01

    We use a latent difference score (LDS) model to examine changes in young children’s number-line (NL) error signatures (errors marking numbers on a NL) over 18 months. A LDS model (1) overcomes some of the inference limitations of analytic models used in previous research, and in particular (2) provides a more reliable test of hypotheses about the meaning and significance of changes in NL error signatures over time and task. The NL error signatures of 217 6-year-olds’ (on test occasion one) were assessed three times over 18 months, along with their math ability on two occasions. On the first occasion (T1) children completed a 0–100 NL task; on the second (T2) a 0–100 NL and a 0–1000 NL task; on the third (T3) occasion a 0–1000 NL task. On the third and fourth occasions (T3 and T4), children completed mental calculation tasks. Although NL error signatures changed over time, these were predictable from other NL task error signatures, and predicted calculation accuracy at T3, as well as changes in calculation between T3 and T4. Multiple indirect effects (change parameters) showed that associations between initial NL error signatures (0–100 NL) and later mental calculation ability were mediated by error signatures on the 0–1000 NL task. The pattern of findings from the LDS model highlight the value of identifying direct and indirect effects in characterizing changing relationships in cognitive representations over task and time. Substantively, they support the claim that children’s NL error signatures generalize over task and time and thus can be used to predict math ability. PMID:26029152

  14. In Situ Measurements of the Post-Spinel and Post-Garnet Phase Boundaries in Pyrolite at 17-32 GPa and 1500-2400 K

    NASA Astrophysics Data System (ADS)

    Ye, Y.; Gu, C.; Shim, S. H.; Prakapenka, V.; Meng, Y.

    2014-12-01

    Recent seismic studies have revealed complex structures near 660-km depth. In order to understand the effects of composition and temperature, we measured the depth and Clapeyron slope of the post-spinel and post-garnet boundaries at the pressure-temperature conditions of 600-700 km depths in pyrolitic compositions: (1) MgO-Al2O3-SiO2 (MAS) and (2) CaO-MgO-Al2O3-SiO2-FeO (CMASF). Glass starting materials were mixed with either gold or platinum powder (10 wt%) for laser coupling and internal pressure scale. Cold compressed foils of the mixtures were loaded in the diamond-anvil cell together with Ar or KCl for thermal insulation and pressure transmission. X-ray diffraction patterns were measured for the samples in the diamond-anvil cell at in situ high pressure and high temperature combined with double side laser heating at beamlines 13-IDD (GSECARS) and 16-IDB (HPCAT) in the Advanced Photon Source. Within 5 to 8 minutes of heating, stable crystalline phase assemblages were formed and persisted with further heating for 20 to 30 minutes. A total of 160 heating cycles were conducted at different pressures and temperatures, providing tight constrains on the phase boundaries. Our data show that the post-spinel transition occurs at 23.6-24.5 GPa and 1850 K with a Clapeyron slope of -2.5(4) MPa/K if the Pt pressure scales are used, consistent with the seismic observation of the 660 discontinuity. The post-garnet boundary occurs at 24.2-27.5 GPa and 1900 - 2450 K. We found that the Clapeyron slope of the post-garnet transition increases with Fe: from 2.4 MPa/K for MAS to 6.2 MPa/K for CMASF. Below 1900 K, garnet disappears near the post-spinel boundary within the resolution of our measurements. Our new data supports the notion that the 660 discontinuity is dominated by the post-spinel phase transition below 1900 K while dominated by the post-garnet phase transition above 1900 K. However, our data indicate much larger Clapeyron slope of the post-garnet transition, suggesting

  15. Effects of Stress Concentrations on the Attenuation by Diffusionally-assisted Grain Boundary Sliding

    NASA Astrophysics Data System (ADS)

    Lee, L.; Morris, S.; Zohdi, T.

    2009-12-01

    We report the numerical results from the Raj-Ashby model for diffusionally-assisted grain boundary sliding with finite slope grain interface. The model is a bicrystal consisting of two Hookean elastic layers of finite thickness, separated by a prescribed spatially periodic interface y = f(x). We assume infinitesimal plane deformation. Within the grains, the displacement field u(x,y,t) satisfies the equations of elastostatic equilibrium. At y = f(x), the shear stress σns and normal stress σnn are assumed continuous. Time-derivatives enter the model only through the constitutive equation prescribing the discontinuity in ∂u / ∂t across the grain boundary; the tangential and the normal components of the jump are related to the shear and the normal components of stress respectively by the equations η' [∂us /∂t] = l σns and [∂un /∂t] + (v l D / k T)(∂2σnn / ∂s2) = 0. Here, η', l, v, D, k and T denote respectively the slip (boundary) viscosity, grain boundary thickness, molecular volume, grain boundary diffusivity, Boltzmann constant, and absolute temperature. The equations define two timescales: tv=η' λ / μ l and tD = k T λ3 / v l D μ, where λ and μ are respectively the interface wavelength, and the elastic rigidity of the grains. Consistent with the small-slope (i.e. ɛ = max|df / dx| << 1) analysis by Morris & Jackson (2009), our numerical results of a sawtooth interface show that the mechanical loss L varies as ω-1 at low frequencies (i.e. ω td << 1), whereas at large frequencies (i.e. ω td >> 1), the mechanical loss L decreases slowly with frequency ω. In addition, we also find that the mechanical loss L decreases more rapidly with frequency ω as the interface slope ɛ is increased. For a slope ɛ = 1, which corresponds to a sawtooth sliding plane found in a regular array of hexagonal polycrystals, the mechanical loss spectrum L ˜ ω-1/3, similar to the scaling found experimentally (Jackson et al. 2002), and observed seismically

  16. Proximal impact deposits at the Cretaceous-Tertiary boundary in the Gulf of Mexico: a restudy of DSDP Leg 77 Sites 536 and 540

    NASA Technical Reports Server (NTRS)

    Alvarez, W.; Smit, J.; Lowrie, W.; Asaro, F.; Margolis, S. V.; Claeys, P.; Kastner, M.; Hildebrand, A. R.

    1992-01-01

    Restudy of Deep Sea Drilling Project Sites 536 and 540 in the southeast Gulf of Mexico gives evidence for a giant wave at Cretaceous-Tertiary boundary time. Five units are recognized: (1) Cenomanian limestone underlies a hiatus in which the five highest Cretaceous stages are missing, possibly because of catastrophic K-T erosion. (2) Pebbly mudstone, 45 m thick, represents a submarine landslide possibly of K-T age. (3) Current-bedded sandstone, more than 2.5 m thick, contains anomalous iridium, tektite glass, and shocked quartz; it is interpreted as ejecta from a nearby impact crater, reworked on the deep-sea floor by the resulting tsunami. (4) A 50-cm interval of calcareous mudstone containing small Cretaceous planktic foraminifera and the Ir peak is interpreted as the silt-size fraction of the Cretaceous material suspended by the impact-generated wave. (5) Calcareous mudstone with basal Tertiary forams and the uppermost tail of the Ir anomaly overlies the disturbed interval, dating the impact and wave event as K-T boundary age. Like Beloc in Haiti and Mimbral in Mexico, Sites 536 and 540 are consistent with a large K-T age impact at the nearby Chicxulub crater.

  17. HTSFinder: Powerful Pipeline of DNA Signature Discovery by Parallel and Distributed Computing

    PubMed Central

    Karimi, Ramin; Hajdu, Andras

    2016-01-01

    Comprehensive effort for low-cost sequencing in the past few years has led to the growth of complete genome databases. In parallel with this effort, a strong need, fast and cost-effective methods and applications have been developed to accelerate sequence analysis. Identification is the very first step of this task. Due to the difficulties, high costs, and computational challenges of alignment-based approaches, an alternative universal identification method is highly required. Like an alignment-free approach, DNA signatures have provided new opportunities for the rapid identification of species. In this paper, we present an effective pipeline HTSFinder (high-throughput signature finder) with a corresponding k-mer generator GkmerG (genome k-mers generator). Using this pipeline, we determine the frequency of k-mers from the available complete genome databases for the detection of extensive DNA signatures in a reasonably short time. Our application can detect both unique and common signatures in the arbitrarily selected target and nontarget databases. Hadoop and MapReduce as parallel and distributed computing tools with commodity hardware are used in this pipeline. This approach brings the power of high-performance computing into the ordinary desktop personal computers for discovering DNA signatures in large databases such as bacterial genome. A considerable number of detected unique and common DNA signatures of the target database bring the opportunities to improve the identification process not only for polymerase chain reaction and microarray assays but also for more complex scenarios such as metagenomics and next-generation sequencing analysis. PMID:26884678

  18. HTSFinder: Powerful Pipeline of DNA Signature Discovery by Parallel and Distributed Computing.

    PubMed

    Karimi, Ramin; Hajdu, Andras

    2016-01-01

    Comprehensive effort for low-cost sequencing in the past few years has led to the growth of complete genome databases. In parallel with this effort, a strong need, fast and cost-effective methods and applications have been developed to accelerate sequence analysis. Identification is the very first step of this task. Due to the difficulties, high costs, and computational challenges of alignment-based approaches, an alternative universal identification method is highly required. Like an alignment-free approach, DNA signatures have provided new opportunities for the rapid identification of species. In this paper, we present an effective pipeline HTSFinder (high-throughput signature finder) with a corresponding k-mer generator GkmerG (genome k-mers generator). Using this pipeline, we determine the frequency of k-mers from the available complete genome databases for the detection of extensive DNA signatures in a reasonably short time. Our application can detect both unique and common signatures in the arbitrarily selected target and nontarget databases. Hadoop and MapReduce as parallel and distributed computing tools with commodity hardware are used in this pipeline. This approach brings the power of high-performance computing into the ordinary desktop personal computers for discovering DNA signatures in large databases such as bacterial genome. A considerable number of detected unique and common DNA signatures of the target database bring the opportunities to improve the identification process not only for polymerase chain reaction and microarray assays but also for more complex scenarios such as metagenomics and next-generation sequencing analysis.

  19. Interactome-transcriptome analysis discovers signatures complementary to GWAS Loci of Type 2 Diabetes

    PubMed Central

    Li, Jing-Woei; Lee, Heung-Man; Wang, Ying; Tong, Amy Hin-Yan; Yip, Kevin Y.; Tsui, Stephen Kwok-Wing; Lok, Si; Ozaki, Risa; Luk, Andrea O; Kong, Alice P. S.; So, Wing-Yee; Ma, Ronald C. W.; Chan, Juliana C. N.; Chan, Ting-Fung

    2016-01-01

    Protein interactions play significant roles in complex diseases. We analyzed peripheral blood mononuclear cells (PBMC) transcriptome using a multi-method strategy. We constructed a tissue-specific interactome (T2Di) and identified 420 molecular signatures associated with T2D-related comorbidity and symptoms, mainly implicated in inflammation, adipogenesis, protein phosphorylation and hormonal secretion. Apart from explaining the residual associations within the DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) study, the T2Di signatures were enriched in pathogenic cell type-specific regulatory elements related to fetal development, immunity and expression quantitative trait loci (eQTL). The T2Di revealed a novel locus near a well-established GWAS loci AChE, in which SRRT interacts with JAZF1, a T2D-GWAS gene implicated in pancreatic function. The T2Di also included known anti-diabetic drug targets (e.g. PPARD, MAOB) and identified possible druggable targets (e.g. NCOR2, PDGFR). These T2Di signatures were validated by an independent computational method, and by expression data of pancreatic islet, muscle and liver with some of the signatures (CEBPB, SREBF1, MLST8, SRF, SRRT and SLC12A9) confirmed in PBMC from an independent cohort of 66 T2D and 66 control subjects. By combining prior knowledge and transcriptome analysis, we have constructed an interactome to explain the multi-layered regulatory pathways in T2D. PMID:27752041

  20. The Cretaceous-Tertiary boundary marine extinction and global primary productivity collapse

    NASA Technical Reports Server (NTRS)

    Zachos, J. C.; Arthus, M. A.; Dean, W. E.

    1988-01-01

    The extinction of marine phyto-and zoo-plankton across the K-T boundary has been well documented. Such an event may have resulted in decreased photosynthetic fixation of carbon in surface waters and a collapse of the food chain in the marine biosphere. Because the vertical and horizontal distribution of the carbon isotopic composition of total dissolved carton (TDC) in the modern ocean is controlled by the transfer of organic carbon from the surface to deep reservoirs, it follows that a major disruption of the marine biosphere would have had a major effect on the distribution of carbon isotopes in the ocean. Negative carbon isotope excursions have been identified at many marine K-T boundary sequences worldwide and are interpreted as a signal of decreased oceanic primary productivity. However, the magnitude, duration and consequences of this productivity crisis have been poorly constrained. On the basis of planktonic and benthic calcareous microfossil carbon isotope and other geochemical data from DSDP Site 577 located on the Shatsky Rise in the north-central Pacific, as well as other sites, researchers have been able to provide a reasonable estimate of the duration and magnitude of this event.

  1. Grain Boundary Sliding in Deforming Wehrlite: Rheology and Microstructure

    NASA Astrophysics Data System (ADS)

    Zhao, N.; Hirth, G.; Cooper, R. F.; Kruckenberg, S. C.

    2016-12-01

    Elastic anisotropy of Earth's upper mantle used to be attributed exclusively to dislocation creep. However, recent experimental results suggest that crystallographic preferred orientation (CPO) in olivine, which contributes to elastic anisotropy, could also form during grain boundary sliding [e.g., 1-3]. Nevertheless, the fundamental problem of how CPO forms during grain boundary sliding is not fully understood. Our current efforts examine the grain-size-sensitive flow of wehrlite, to characterize the influence of the second phase (clinopyroxene) both on olivine CPO formation as well as the propensity of grain boundary sliding and accumulated strain to effect solid-state phase separation (i.e., metamorphic layering). Creep tests on fine-grain-size (2-5 µm) olivine and clinopyroxene aggregates (T =1100-1200ºC; P = 1.5 GPa; γ=3-7) have been conducted. These reveal strong type-B fabric for olivine. Characterization of effects of grain size, temperature and applied strain rate reveal the grain size dependence, stress exponent and activation energy of the flow kinetics of wehrlite. The stress exponent, which is similar to stress exponent for harzburgite reported by Sundberg & Cooper [1], and grain-size dependence suggest that the dominant deformation mechanism in our experiments may be grain boundary sliding. A large stress drop in early segments of experiments suggest an evolution of microstructure. The Fourier transform of backscatter images demonstrates that there exists a direction of foliation, defined by Ol-Cpx heterophase boundaries, which may be the key to understand the development of CPO formation. [1] Sundberg, M. & Cooper, R. F., J. Geophys. Res., 2008. [2] Miyazaki, T., Sueyoshi, K., and Hiraga, T., Nature, 2013. [3] Tielke, J. A., L. N. Hansen, M. Tasaka, C. Meyers, M. E. Zimmerman, and D. L. Kohlstedt, J. Geophys. Res., 2016.

  2. matK-QR classifier: a patterns based approach for plant species identification.

    PubMed

    More, Ravi Prabhakar; Mane, Rupali Chandrashekhar; Purohit, Hemant J

    2016-01-01

    DNA barcoding is widely used and most efficient approach that facilitates rapid and accurate identification of plant species based on the short standardized segment of the genome. The nucleotide sequences of maturaseK ( matK ) and ribulose-1, 5-bisphosphate carboxylase ( rbcL ) marker loci are commonly used in plant species identification. Here, we present a new and highly efficient approach for identifying a unique set of discriminating nucleotide patterns to generate a signature (i.e. regular expression) for plant species identification. In order to generate molecular signatures, we used matK and rbcL loci datasets, which encompass 125 plant species in 52 genera reported by the CBOL plant working group. Initially, we performed Multiple Sequence Alignment (MSA) of all species followed by Position Specific Scoring Matrix (PSSM) for both loci to achieve a percentage of discrimination among species. Further, we detected Discriminating Patterns (DP) at genus and species level using PSSM for the matK dataset. Combining DP and consecutive pattern distances, we generated molecular signatures for each species. Finally, we performed a comparative assessment of these signatures with the existing methods including BLASTn, Support Vector Machines (SVM), Jrip-RIPPER, J48 (C4.5 algorithm), and the Naïve Bayes (NB) methods against NCBI-GenBank matK dataset. Due to the higher discrimination success obtained with the matK as compared to the rbcL , we selected matK gene for signature generation. We generated signatures for 60 species based on identified discriminating patterns at genus and species level. Our comparative assessment results suggest that a total of 46 out of 60 species could be correctly identified using generated signatures, followed by BLASTn (34 species), SVM (18 species), C4.5 (7 species), NB (4 species) and RIPPER (3 species) methods As a final outcome of this study, we converted signatures into QR codes and developed a software matK -QR Classifier (http

  3. The combinatorial PP1-binding consensus Motif (R/K)x( (0,1))V/IxFxx(R/K)x(R/K) is a new apoptotic signature.

    PubMed

    Godet, Angélique N; Guergnon, Julien; Maire, Virginie; Croset, Amélie; Garcia, Alphonse

    2010-04-01

    Previous studies established that PP1 is a target for Bcl-2 proteins and an important regulator of apoptosis. The two distinct functional PP1 consensus docking motifs, R/Kx((0,1))V/IxF and FxxR/KxR/K, involved in PP1 binding and cell death were previously characterized in the BH1 and BH3 domains of some Bcl-2 proteins. In this study, we demonstrate that DPT-AIF(1), a peptide containing the AIF(562-571) sequence located in a c-terminal domain of AIF, is a new PP1 interacting and cell penetrating molecule. We also showed that DPT-AIF(1) provoked apoptosis in several human cell lines. Furthermore, DPT-APAF(1) a bi-partite cell penetrating peptide containing APAF-1(122-131), a non penetrating sequence from APAF-1 protein, linked to our previously described DPT-sh1 peptide shuttle, is also a PP1-interacting death molecule. Both AIF(562-571) and APAF-1(122-131) sequences contain a common R/Kx((0,1))V/IxFxxR/KxR/K motif, shared by several proteins involved in control of cell survival pathways. This motif combines the two distinct PP1c consensus docking motifs initially identified in some Bcl-2 proteins. Interestingly DPT-AIF(2) and DPT-APAF(2) that carry a F to A mutation within this combinatorial motif, no longer exhibited any PP1c binding or apoptotic effects. Moreover the F to A mutation in DPT-AIF(2) also suppressed cell penetration. These results indicate that the combinatorial PP1c docking motif R/Kx((0,1))V/IxFxxR/KxR/K, deduced from AIF(562-571) and APAF-1(122-131) sequences, is a new PP1c-dependent Apoptotic Signature. This motif is also a new tool for drug design that could be used to characterize potential anti-tumour molecules.

  4. A gene expression signature of RAS pathway dependence predicts response to PI3K and RAS pathway inhibitors and expands the population of RAS pathway activated tumors.

    PubMed

    Loboda, Andrey; Nebozhyn, Michael; Klinghoffer, Rich; Frazier, Jason; Chastain, Michael; Arthur, William; Roberts, Brian; Zhang, Theresa; Chenard, Melissa; Haines, Brian; Andersen, Jannik; Nagashima, Kumiko; Paweletz, Cloud; Lynch, Bethany; Feldman, Igor; Dai, Hongyue; Huang, Pearl; Watters, James

    2010-06-30

    Hyperactivation of the Ras signaling pathway is a driver of many cancers, and RAS pathway activation can predict response to targeted therapies. Therefore, optimal methods for measuring Ras pathway activation are critical. The main focus of our work was to develop a gene expression signature that is predictive of RAS pathway dependence. We used the coherent expression of RAS pathway-related genes across multiple datasets to derive a RAS pathway gene expression signature and generate RAS pathway activation scores in pre-clinical cancer models and human tumors. We then related this signature to KRAS mutation status and drug response data in pre-clinical and clinical datasets. The RAS signature score is predictive of KRAS mutation status in lung tumors and cell lines with high (> 90%) sensitivity but relatively low (50%) specificity due to samples that have apparent RAS pathway activation in the absence of a KRAS mutation. In lung and breast cancer cell line panels, the RAS pathway signature score correlates with pMEK and pERK expression, and predicts resistance to AKT inhibition and sensitivity to MEK inhibition within both KRAS mutant and KRAS wild-type groups. The RAS pathway signature is upregulated in breast cancer cell lines that have acquired resistance to AKT inhibition, and is downregulated by inhibition of MEK. In lung cancer cell lines knockdown of KRAS using siRNA demonstrates that the RAS pathway signature is a better measure of dependence on RAS compared to KRAS mutation status. In human tumors, the RAS pathway signature is elevated in ER negative breast tumors and lung adenocarcinomas, and predicts resistance to cetuximab in metastatic colorectal cancer. These data demonstrate that the RAS pathway signature is superior to KRAS mutation status for the prediction of dependence on RAS signaling, can predict response to PI3K and RAS pathway inhibitors, and is likely to have the most clinical utility in lung and breast tumors.

  5. A gene expression signature of RAS pathway dependence predicts response to PI3K and RAS pathway inhibitors and expands the population of RAS pathway activated tumors

    PubMed Central

    2010-01-01

    Background Hyperactivation of the Ras signaling pathway is a driver of many cancers, and RAS pathway activation can predict response to targeted therapies. Therefore, optimal methods for measuring Ras pathway activation are critical. The main focus of our work was to develop a gene expression signature that is predictive of RAS pathway dependence. Methods We used the coherent expression of RAS pathway-related genes across multiple datasets to derive a RAS pathway gene expression signature and generate RAS pathway activation scores in pre-clinical cancer models and human tumors. We then related this signature to KRAS mutation status and drug response data in pre-clinical and clinical datasets. Results The RAS signature score is predictive of KRAS mutation status in lung tumors and cell lines with high (> 90%) sensitivity but relatively low (50%) specificity due to samples that have apparent RAS pathway activation in the absence of a KRAS mutation. In lung and breast cancer cell line panels, the RAS pathway signature score correlates with pMEK and pERK expression, and predicts resistance to AKT inhibition and sensitivity to MEK inhibition within both KRAS mutant and KRAS wild-type groups. The RAS pathway signature is upregulated in breast cancer cell lines that have acquired resistance to AKT inhibition, and is downregulated by inhibition of MEK. In lung cancer cell lines knockdown of KRAS using siRNA demonstrates that the RAS pathway signature is a better measure of dependence on RAS compared to KRAS mutation status. In human tumors, the RAS pathway signature is elevated in ER negative breast tumors and lung adenocarcinomas, and predicts resistance to cetuximab in metastatic colorectal cancer. Conclusions These data demonstrate that the RAS pathway signature is superior to KRAS mutation status for the prediction of dependence on RAS signaling, can predict response to PI3K and RAS pathway inhibitors, and is likely to have the most clinical utility in lung and breast

  6. Surra Sero K-SeT, a new immunochromatographic test for serodiagnosis of Trypanosoma evansi infection in domestic animals.

    PubMed

    Birhanu, Hadush; Rogé, Stijn; Simon, Thomas; Baelmans, Rudy; Gebrehiwot, Tadesse; Goddeeris, Bruno Maria; Büscher, Philippe

    2015-07-30

    Trypanosoma evansi, the causative agent of surra, infects different domestic and wild animals and has a wide geographical distribution. It is mechanically transmitted mainly by haematophagous flies. Parasitological techniques are commonly used for the diagnosis of surra but have limited sensitivity. Therefore, serodiagnosis based on the detection of T. evansi specific antibodies is recommended by the World Organisation for Animal Health (OIE). Recently, we developed a new antibody detection test for the serodiagnosis of T. evansi infection, the Surra Sero K-SeT. Surra Sero K-SeT is an immunochromatographic test (ICT) that makes use of recombinant variant surface glycoprotein rVSG RoTat 1.2, produced in the yeast Pichia pastoris. In this study, we compared the diagnostic accuracy of the Surra Sero K-SeT and the Card Agglutination Test for T. evansi Trypanosomososis (CATT/T. evansi) with immune trypanolysis (TL) as reference test on a total of 806 sera from camels, water buffaloes, horses, bovines, sheep, dogs and alpacas. Test agreement was highest between Surra Sero K-SeT and TL (κ=0.91, 95% CI 0.841-0.979) and somewhat lower between CATT/T. evansi and TL (κ=0.85, 95% CI 0.785-0.922) and Surra Sero K-SeT and CATT/T. evansi (κ=0.81, 95% CI 0.742-0.878). The Surra Sero K-SeT displayed a somewhat lower overall specificity than CATT/T. evansi (94.8% versus 98.3%, χ(2)=13.37, p<0.001) but a considerably higher sensitivity (98.1% versus 84.4%, χ(2)=33.39, p<0.001). We conclude that the Surra Sero K-SeT may become an alternative for the CATT/T. evansi for sensitive detection of antibodies against T. evansi in domestic animals. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Microwave Polarized Signatures Generated within Cloud Systems: SSM/I Observations Interpreted with Radiative Transfer Simulations

    NASA Technical Reports Server (NTRS)

    Prigent, Catherine; Pardo, Juan R.; Mishchenko, Michael I.; Rossow, Willaim B.; Hansen, James E. (Technical Monitor)

    2001-01-01

    Special Sensor Microwave /Imager (SSM/I) observations in cloud systems are studied over the tropics. Over optically thick cloud systems, presence of polarized signatures at 37 and 85 GHz is evidenced and analyzed with the help of cloud top temperature and optical thickness extracted from visible and IR satellite observations. Scattering signatures at 85 GHz (TbV(85) less than or = 250 K) are associated with polarization differences greater than or = 6 K, approx. 50%, of the time over ocean and approx. 40% over land. In addition. over thick clouds the polarization difference at 37 GHz is rarely negligible. The polarization differences at 37 and 85 GHz do not stem from the surface but are generated in regions of relatively homogeneous clouds having high liquid water content. To interpret the observations, a radiative transfer model that includes the scattering by non-spherical particles is developed. based on the T-matrix approach and using the doubling and adding method. In addition to handling randomly and perfectly oriented particles, this model can also simulate the effect of partial orientation of the hydrometeors. Microwave brightness temperatures are simulated at SSM/I frequencies and are compared with the observations. Polarization differences of approx. 2 K can be simulated at 37 GHz over a rain layer, even using spherical drops. The polarization difference is larger for oriented non-spherical particles. The 85 GHz simulations are very sensitive to the ice phase of the cloud. Simulations with spherical particles or with randomly oriented non-spherical ice particles cannot replicate the observed polarization differences. However, with partially oriented non-spherical particles, the observed polarized signatures at 85 GHz are explained, and the sensitivity of the scattering characteristics to the particle size, asphericity, and orientation is analyzed. Implications on rain and ice retrievals are discussed.

  8. Loss of oncogenic Notch1 with resistance to a PI3K inhibitor in T-cell leukaemia.

    PubMed

    Dail, Monique; Wong, Jason; Lawrence, Jessica; O'Connor, Daniel; Nakitandwe, Joy; Chen, Shann-Ching; Xu, Jin; Lee, Leslie B; Akagi, Keiko; Li, Qing; Aster, Jon C; Pear, Warren S; Downing, James R; Sampath, Deepak; Shannon, Kevin

    2014-09-25

    Mutations that deregulate Notch1 and Ras/phosphoinositide 3 kinase (PI3K)/Akt signalling are prevalent in T-cell acute lymphoblastic leukaemia (T-ALL), and often coexist. Here we show that the PI3K inhibitor GDC-0941 is active against primary T-ALLs from wild-type and Kras(G12D) mice, and addition of the MEK inhibitor PD0325901 increases its efficacy. Mice invariably relapsed after treatment with drug-resistant clones, most of which unexpectedly had reduced levels of activated Notch1 protein, downregulated many Notch1 target genes, and exhibited cross-resistance to γ-secretase inhibitors. Multiple resistant primary T-ALLs that emerged in vivo did not contain somatic Notch1 mutations present in the parental leukaemia. Importantly, resistant clones upregulated PI3K signalling. Consistent with these data, inhibiting Notch1 activated the PI3K pathway, providing a likely mechanism for selection against oncogenic Notch1 signalling. These studies validate PI3K as a therapeutic target in T-ALL and raise the unexpected possibility that dual inhibition of PI3K and Notch1 signalling could promote drug resistance in T-ALL.

  9. Electromigration-induced void grain-boundary interactions: The mean time to failure for copper interconnects with bamboo and near-bamboo structures

    NASA Astrophysics Data System (ADS)

    Ogurtani, Tarik Omer; Oren, Ersin Emre

    2004-12-01

    A well-posed moving boundary-value problem, describing the dynamics of curved interfaces and surfaces associated with voids and/or cracks that are interacting with grain boundaries, is obtained. Extensive computer simulations are performed for void configuration evolution during intergranular motion, under the actions of capillary and electromigration forces in thin-film metallic interconnects with bamboo structures. The analysis of experimental data, utilizing the mean time to failure formulas derived in this paper, gives consistent values for the interface diffusion coefficients and enthalpies of voids. 5.85×10-5exp(-0.95eV/kT)m2s-1 is the value obtained for voids that form in the interior of the copper interconnects avoiding any surface contamination. 1.80×10-4exp(-1.20eV/kT)m2s-1 is obtained for those voids that nucleate either at triple junctions or at the grain-boundary technical surface intersections (grain-boundary groove), where the chemical impurities such as Si, O, S, and even C are segregated during the metallization and annealing processes and may act as trap centers for hopping vacancies.

  10. Search for t Z' associated production induced by t c Z' couplings at the LHC

    NASA Astrophysics Data System (ADS)

    Hou, Wei-Shu; Kohda, Masaya; Modak, Tanmoy

    2017-07-01

    The P5' and RK anomalies, recently observed by the LHCb Collaboration in B →K(*) transitions, may indicate the existence of a new Z' boson, which may arise from gauged Lμ-Lτ symmetry. Flavor-changing neutral current Z' couplings, such as t c Z', can be induced by the presence of extra vector-like quarks. In this paper we study the LHC signatures of the induced right-handed t c Z' coupling that is inspired by, but not directly linked to, the B →K(*) anomalies. The specific processes studied are c g →t Z' and its conjugate process, each followed by Z'→μ+μ-. By constructing an effective theory for the t c Z' coupling, we first explore in a model-independent way the discovery potential of such a Z' at the 14 TeV LHC with 300 and 3000 fb-1 integrated luminosities. We then reinterpret the model-independent results within the gauged Lμ-Lτ model. In connection with t c Z', the model also implies the existence of a flavor-conserving c c Z' coupling, which can drive the c c ¯→Z'→μ+μ- process. Our study shows that existing LHC results for dimuon resonance searches already constrain the c c Z' coupling, and that the Z' can be discovered in either or both of the c g →t Z' and c c ¯→Z' processes. We further discuss the sensitivity to the left-handed t c Z' coupling and find that the coupling values favored by the B →K(*) anomalies lie slightly below the LHC discovery reach even with 3000 fb-1 .

  11. Slippage and boundary layer probed in an almost ideal gas by a nanomechanical oscillator.

    PubMed

    Defoort, M; Lulla, K J; Crozes, T; Maillet, O; Bourgeois, O; Collin, E

    2014-09-26

    We measure the interaction between ⁴He gas at 4.2 K and a high-quality nanoelectromechanical string device for its first three symmetric modes (resonating at 2.2, 6.7, and 11 MHz with quality factor Q>0.1×10⁶) over almost 6 orders of magnitude in pressure. This fluid can be viewed as the best experimental implementation of an almost ideal monoatomic and inert gas of which properties are tabulated. The experiment ranges from high pressure where the flow is of laminar Stokes-type presenting slippage down to very low pressures where the flow is molecular. In the molecular regime, when the mean-free path is of the order of the distance between the suspended nanomechanical probe and the bottom of the trench, we resolve for the first time the signature of the boundary (Knudsen) layer onto the measured dissipation. Our results are discussed in the framework of the most recent theories investigating boundary effects in fluids (both analytic approaches and direct simulation Monte Carlo methods).

  12. Acoustic Receptivity of a Blasius Boundary Layer with 2-D and Oblique Surface Waviness

    NASA Technical Reports Server (NTRS)

    King, Rudolph A.; Breuer, Kenneth S.

    2000-01-01

    An experimental investigation was conducted to examine acoustic receptivity and subsequent boundary-layer instability evolution for a Blasius boundary layer formed on a flat plate in the presence of two-dimensional (2-D) and oblique (3-D) surface waviness. The effect of the non-localized surface roughness geometry and acoustic wave amplitude on the receptivity process was explored. The surface roughness had a well defined wavenumber spectrum with fundamental wavenumber k (sub w). A planar downstream traveling acoustic wave was created to temporally excite the flow near the resonance frequency of an unstable eigenmode corresponding to k (sub ts) = k (sub w). The range of acoustic forcing levels, epsilon, and roughness heights, DELTA h, examined resulted in a linear dependence of receptivity coefficients; however, the larger values of the forcing combination epsilon dot DELTA h resulted in subsequent nonlinear development of the Tollmien-Schlichting (T-S) wave. This study provided the first experimental evidence of a marked increase in the receptivity coefficient with increasing obliqueness of the surface waviness in excellent agreement with theory. Detuning of the 2-D and oblique disturbances was investigated by varying the streamwise wall-roughness wavenumber a,, and measuring the T-S response. For the configuration where laminar-to-turbulent breakdown occurred, the breakdown process was found to be dominated by energy at the fundamental and harmonic frequencies, indicative of K-type breakdown.

  13. K-RAS GTPase- and B-RAF kinase-mediated T-cell tolerance defects in rheumatoid arthritis.

    PubMed

    Singh, Karnail; Deshpande, Pratima; Li, Guangjin; Yu, Mingcan; Pryshchep, Sergey; Cavanagh, Mary; Weyand, Cornelia M; Goronzy, Jörg J

    2012-06-19

    Autoantibodies to common autoantigens and neoantigens, such as IgG Fc and citrullinated peptides, are immunological hallmarks of rheumatoid arthritis (RA). We examined whether a failure in maintaining tolerance is mediated by defects in T-cell receptor activation threshold settings. RA T cells responded to stimulation with significantly higher ERK phosphorylation (P < 0.001). Gene expression arrays of ERK pathway members suggested a higher expression of KRAS and BRAF, which was confirmed by quantitative PCR (P = 0.003), Western blot, and flow cytometry (P < 0.01). Partial silencing of KRAS and BRAF lowered activation-induced phosphorylated ERK levels (P < 0.01). In individual cells, levels of these signaling molecules correlated with ERK phosphorylation, attesting that their concentrations are functionally important. In confocal studies, B-RAF/K-RAS clustering was increased in RA T cells 2 min after T-cell receptor stimulation (P < 0.001). Overexpression of B-RAF and K-RAS in normal CD4 T cells amplified polyclonal T-cell proliferation and facilitated responses to citrullinated peptides. We propose that increased expression of B-RAF and K-RAS lowers T-cell activation thresholds in RA T cells, enabling responses to autoantigens.

  14. The T2K ND280 off-axis pi-zero detector

    NASA Astrophysics Data System (ADS)

    Assylbekov, S.; Barr, G.; Berger, B. E.; Berns, H.; Beznosko, D.; Bodek, A.; Bradford, R.; Buchanan, N.; Budd, H.; Caffari, Y.; Connolly, K.; Danko, I.; Das, R.; Davis, S.; Day, M.; Dytman, S.; Dziomba, M.; Flight, R.; Forbush, D.; Gilje, K.; Hansen, D.; Hignight, J.; Imber, J.; Johnson, R. A.; Jung, C. K.; Kravtsov, V.; Le, P. T.; Lopez, G. D.; Malafis, C. J.; Manly, S.; Marino, A. D.; McFarland, K. S.; McGrew, C.; Metelko, C.; Nagashima, G.; Naples, D.; Nicholls, T. C.; Nielsen, B.; Paolone, V.; Paul, P.; Pearce, G. F.; Qian, W.; Ramos, K.; Reinherz-Aronis, E.; Rodrigues, P. A.; Ruterbories, D.; Schmidt, J.; Schwehr, J.; Siyad, M.; Steffens, J.; Tadepalli, A. S.; Taylor, I. J.; Thorpe, M.; Toki, W.; Vanek, C.; Warner, D.; Weber, A.; Wilkes, R. J.; Wilson, R. J.; Yanagisawa, C.; Yuan, T.

    2012-09-01

    The pi-zero detector (PØD) is one of the subdetectors that makes up the off-axis near detector for the Tokai-to-Kamioka (T2K) long baseline neutrino experiment. The primary goal for the PØD is to measure the relevant cross-sections for neutrino interactions that generate π0's, especially the cross-section for neutral current π0 interactions, which are one of the dominant sources of background to the νμ→νe appearance signal in T2K. The PØD is composed of layers of plastic scintillator alternating with water bags and brass sheets or lead sheets and is one of the first detectors to use Multi-Pixel Photon Counters (MPPCs) on a large scale.

  15. Two-dimensional T2 distribution mapping in rock core plugs with optimal k-space sampling.

    PubMed

    Xiao, Dan; Balcom, Bruce J

    2012-07-01

    Spin-echo single point imaging has been employed for 1D T(2) distribution mapping, but a simple extension to 2D is challenging since the time increase is n fold, where n is the number of pixels in the second dimension. Nevertheless 2D T(2) mapping in fluid saturated rock core plugs is highly desirable because the bedding plane structure in rocks often results in different pore properties within the sample. The acquisition time can be improved by undersampling k-space. The cylindrical shape of rock core plugs yields well defined intensity distributions in k-space that may be efficiently determined by new k-space sampling patterns that are developed in this work. These patterns acquire 22.2% and 11.7% of the k-space data points. Companion density images may be employed, in a keyhole imaging sense, to improve image quality. T(2) weighted images are fit to extract T(2) distributions, pixel by pixel, employing an inverse Laplace transform. Images reconstructed with compressed sensing, with similar acceleration factors, are also presented. The results show that restricted k-space sampling, in this application, provides high quality results. Copyright © 2012 Elsevier Inc. All rights reserved.

  16. Tidal Boundary Conditions in SEAWAT

    USGS Publications Warehouse

    Mulligan, Ann E.; Langevin, Christian; Post, Vincent E.A.

    2011-01-01

    SEAWAT, a U.S. Geological Survey groundwater flow and transport code, is increasingly used to model the effects of tidal motion on coastal aquifers. Different options are available to simulate tidal boundaries but no guidelines exist nor have comparisons been made to identify the most effective approach. We test seven methods to simulate a sloping beach and a tidal flat. The ocean is represented in one of the three ways: directly using a high hydraulic conductivity (high-K) zone and indirect simulation via specified head boundaries using either the General Head Boundary (GHB) or the new Periodic Boundary Condition (PBC) package. All beach models simulate similar water fluxes across the upland boundary and across the sediment-water interface although the ratio of intertidal to subtidal flow is different at low tide. Simulating a seepage face results in larger intertidal fluxes and influences near-shore heads and salinity. Major differences in flow occur in the tidal flat simulations. Because SEAWAT does not simulate unsaturated flow the water table only rises via flow through the saturated zone. This results in delayed propagation of the rising tidal signal inland. Inundation of the tidal flat is delayed as is flow into the aquifer across the flat. This is severe in the high-K and PBC models but mild in the GHB models. Results indicate that any of the tidal boundary options are fine if the ocean-aquifer interface is steep. However, as the slope of that interface decreases, the high-K and PBC approaches perform poorly and the GHB boundary is preferable.

  17. 26 CFR 1.404(k)-1T - Questions and answers relating to the deductibility of certain dividend distributions. (Temporary)

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... deductibility of certain dividend distributions. (Temporary) 1.404(k)-1T Section 1.404(k)-1T Internal Revenue... (CONTINUED) Pension, Profit-Sharing, Stock Bonus Plans, Etc. § 1.404(k)-1T Questions and answers relating to the deductibility of certain dividend distributions. (Temporary) Q-1: What does section 404(k) provide...

  18. 26 CFR 1.404(k)-1T - Questions and answers relating to the deductibility of certain dividend distributions. (Temporary)

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... deductibility of certain dividend distributions. (Temporary) 1.404(k)-1T Section 1.404(k)-1T Internal Revenue... (CONTINUED) Pension, Profit-Sharing, Stock Bonus Plans, Etc. § 1.404(k)-1T Questions and answers relating to the deductibility of certain dividend distributions. (Temporary) Q-1: What does section 404(k) provide...

  19. 26 CFR 1.404(k)-1T - Questions and answers relating to the deductibility of certain dividend distributions. (Temporary)

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... deductibility of certain dividend distributions. (Temporary) 1.404(k)-1T Section 1.404(k)-1T Internal Revenue... (CONTINUED) Pension, Profit-Sharing, Stock Bonus Plans, Etc. § 1.404(k)-1T Questions and answers relating to the deductibility of certain dividend distributions. (Temporary) Q-1: What does section 404(k) provide...

  20. 26 CFR 1.404(k)-1T - Questions and answers relating to the deductibility of certain dividend distributions. (Temporary)

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... deductibility of certain dividend distributions. (Temporary) 1.404(k)-1T Section 1.404(k)-1T Internal Revenue... (CONTINUED) Pension, Profit-Sharing, Stock Bonus Plans, Etc. § 1.404(k)-1T Questions and answers relating to the deductibility of certain dividend distributions. (Temporary) Q-1: What does section 404(k) provide...

  1. Ground roll attenuation using polarization analysis in the t-f-k domain

    NASA Astrophysics Data System (ADS)

    Wang, C.; Wang, Y.

    2017-07-01

    S waves travel slower than P waves and have a lower dominant frequency. Therefore, applying common techniques such as time-frequency filtering and f-k filtering to separate S waves from ground roll is difficult because ground roll is also characterized by slow velocity and low frequency. In this study, we present a method for attenuating ground roll using a polarization filtering method based on the t-f-k transform. We describe the particle motion of the waves by complex vector signals. Each pair of frequency components, whose frequencies have the same absolute value but different signs, of the complex signal indicate an elliptical or linear motion. The polarization parameters of the elliptical or linear motion are explicitly related to the two Fourier coefficients. We then extend these concepts to the t-f-k domain and propose a polarization filtering method for ground roll attenuation based on the t-f-k transform. The proposed approach can define automatically the time-varying reject zones on the f-k panel at different times as a function of the reciprocal ellipticity. Four attributes, time, frequency, apparent velocity and polarization are used to identify and extract the ground roll simultaneously. Thus, the ground roll and body waves can be separated as long as they are dissimilar in one of these attributes. We compare our method with commonly used filtering techniques by applying the methods to synthetic and real seismic data. The results indicate that our method can attenuate ground roll while preserving body waves more effectively than the other methods.

  2. How to interpret current-voltage relationships of blocking grain boundaries in oxygen ionic conductors.

    PubMed

    Kim, Seong K; Khodorov, Sergey; Chen, Chien-Ting; Kim, Sangtae; Lubomirsky, Igor

    2013-06-14

    A new model based on a linear diffusion equation is proposed to explain the current-voltage characteristics of blocking grain boundaries in Y-doped CeO2 in particular. One can also expect that the model can be applicable to the ionic conductors with blocking grain boundaries, in general. The model considers an infinitely long chain of identical grains separated by grain boundaries, which are treated as regions in which depletion layers of mobile ions are formed due to trapping of immobile charges that do not depend on the applied voltage as well as temperature. The model assumes that (1) the grain boundaries do not represent physical blocking layers, which implies that if there is a second phase at the grain boundaries, then it is too thin to impede ion diffusion and (2) the ions follow Boltzmann distribution throughout the materials. Despite its simplicity, the model successfully reproduces the "power law": current proportional to voltage power n and illustrated with the experimental example of Y-doped ceria. The model also correctly predicts that the product nT, where T is the temperature in K, is constant and is proportional to the grain boundary potential as long as the charge at the grain boundaries remains trapped. The latter allows its direct determination from the current-voltage characteristics and promises considerable simplification in the analysis of the electrical characteristics of the grain boundaries with respect to the models currently in use.

  3. [In vitro function of outer membrane protease T of Escherichia coli K1 pathogenic strain].

    PubMed

    Hui, Changye; Guo, Yan; Wu, Shuchi; Peng, Liang; Cao, Hong; Huang, Shenghe

    2010-01-01

    Plasminogen activation and antimicrobial peptide hydrolysis contribute to pathogens invasion and survival in vivo. To demonstrate the expression of outer membrane protease T in E. coli K1 pathogenic strain E44, its activity of plasminogen activator and protamine hydrolysis. After Benzamidine Sepharose Fast Flow and SOURCE 30Q chromatography, we got E44 outer membrane mixed fraction, and examined its activity of plasminogen activation with chromogenic substrate S-2251 method. An ompT deletion mutant of E44 was constructed by using the suicide vector pCVD442, termed as E44ompT. We examined 0.1 mg/mL cationic antimicrobial peptide protamine susceptibility of E44, ompT mutant strain E44ompT and E44ompT harboring pUCT, which was constructed by inserting complete ompT open reading frame into pUC13. We got about 37 kDa E44 membrane extract, which could activate plasminogen, and activation was membrane extract dose dependent. This confirmed the expression of outer membrane protease T in the outer membrane of E44. E44ompT was, more susceptible to 0.1 mg/mL protamine than E44, and E440mpT was partially complemented by pUCT. Outer membrane protease T is expressed in E. coli K1 pathogenic strain E44, and can activate plasminogen and hydrolyze protamine.

  4. 26 CFR 1.404(k)-1T - Questions and answers relating to the deductibility of certain dividend distributions. (Temporary)

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... deductibility of certain dividend distributions. (Temporary) 1.404(k)-1T Section 1.404(k)-1T Internal Revenue... Pension, Profit-Sharing, Stock Bonus Plans, Etc. § 1.404(k)-1T Questions and answers relating to the deductibility of certain dividend distributions. (Temporary) Q-1: What does section 404(k) provide? A-1: Section...

  5. The Cretaceous-Tertiary boundary biotic crisis in the Basque country

    NASA Technical Reports Server (NTRS)

    Lamolda, M. A.

    1988-01-01

    The Zumaya section has been selected as a classic locality for the study of the Cretaceous-Tertiary (K-T) boundary due to its richness in microfaune, macrofaune, and nannoflora. The sections present similar good conditions for the study of the K-T boundary. The sedimentary rocks of the Uppermost Maastrichtian from the Basque Country are purple or pink marls and marls-tones. Above it is found a clayed bed, 40 to 29 cm thick, grey or dark grey in its basal part, of Lowermost Danian age. Above there is alternation of micritic grey-pink limestones and thin clay beds of Dano-Montian age. The average sedimentation is 7 to 8 times higher during the Upper Maastrichtian than in the Dano-Montian. The macrofauna underwent a decrease since the Campanian and was not found in the last 11 m of the Zumaya section; it was associated with changes in paleoceanographic conditions and primary productivity of the oceans. The microfossil assemblages in the K-T transition allows the recognition of several phases of a complex crisis between two well established planktonic ecosystems. In the Mayaroensis Zone there is a stable ecosystem with 45 to 47 planktonic foraminifera species. The disappearance of A. mayaroensis starts a degradation of the ecosystem. The number of planktonic foraminiera species decreases between 20 and 45 percent. The next phase of the crisis was the result of main extinction events in the planktonic calcareous ecosystem. There are several cretaceous planktonic foraminifera species, probably reworked, whose numbers decrease upward. The next and last phase of the biotic crisis shows a diversification of the ecosystem; the number of planktonic foraminifera is 2 to 3 times higher than before and it is noted the first appearance of Tertiary nannoflora species, while Cretaceous species decrease and persisting species are still the main ones.

  6. Probing Signatures of a Distant Planet around the Young T-Tauri Star CI Tau Hosting a Possible Hot Jupiter

    NASA Astrophysics Data System (ADS)

    Konishi, Mihoko; Hashimoto, Jun; Hori, Yasunori

    2018-06-01

    We search for signatures of a distant planet around the two million-year-old classical T-Tauri star CI Tau hosting a hot-Jupiter candidate ({M}{{p}}\\sin i∼ 8.1 {M}Jupiter}) in an eccentric orbit (e ∼ 0.3). To probe the existence of an outer perturber, we reanalyzed 1.3 mm dust continuum observations of the protoplanetary disk around CI Tau obtained by the Atacama Large Millimeter/submillimeter Array (ALMA). We found a gap structure at ∼0.″8 in CI Tau’s disk. Our visibility fitting assuming an axisymmetric surface brightness profile suggested that the gap is located at a deprojected radius of 104.5 ± 1.6 au and has a width of 36.9 ± 2.9 au. The brightness temperature around the gap was calculated to be ∼2.3 K lower than that of the ambient disk. Gap-opening mechanisms such as secular gravitational instability (GI) and dust trapping can explain the gap morphology in the CI Tau disk. The scenario that an unseen planet created the observed gap structure cannot be ruled out, although the coexistence of an eccentric hot Jupiter and a distant planet around the young CI Tau would be challenging for gravitational scattering scenarios. The mass of the planet was estimated to be between ∼0.25 M Jupiter and ∼0.8 M Jupiter from the gap width and depth ({0.41}-0.06+0.04) in the modeled surface brightness image, which is lower than the current detection limits of high-contrast direct imaging. The young classical T-Tauri CI Tau may be a unique system for exploring the existence of a potential distant planet as well as the origin of an eccentric hot Jupiter.

  7. Tissue signature characterisation of diffusion tensor abnormalities in cerebral gliomas.

    PubMed

    Price, Stephen J; Peña, Alonso; Burnet, Neil G; Jena, Raj; Green, Hadrian A L; Carpenter, T Adrian; Pickard, John D; Gillard, Jonathan H

    2004-10-01

    The inherent invasiveness of malignant cells is a major determinant of the poor prognosis of cerebral gliomas. Diffusion tensor MRI (DTI) can identify white matter abnormalities in gliomas that are not seen on conventional imaging. By breaking down DTI into its isotropic (p) and anisotropic (q) components, we can determine tissue diffusion "signatures". In this study we have characterised these abnormalities in peritumoural white matter tracts. Thirty-five patients with cerebral gliomas and seven normal volunteers were imaged with DTI and T2-weighted sequences at 3 T. Displaced, infiltrated and disrupted white matter tracts were identified using fractional anisotropy (FA) maps and directionally encoded colour maps and characterised using tissue signatures. The diffusion tissue signatures were normal in ROIs where the white matter was displaced. Infiltrated white matter was characterised by an increase in the isotropic component of the tensor (p) and a less marked reduction of the anisotropic component (q). In disrupted white matter tracts, there was a marked reduction in q and increase in p. The direction of water diffusion was grossly abnormal in these cases. Diffusion tissue signatures may be a useful method of assessing occult white matter infiltration. Copyright 2004 Springer-Verlag

  8. Simplified models for displaced dark matter signatures

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Buchmueller, Oliver; De Roeck, Albert; Hahn, Kristian

    We propose a systematic programme to search for long-lived neutral particle signatures through a minimal set of displaced =E T searches (dMETs). Here, our approach is to extend the well-established dark matter simpli ed models to include displaced vertices. The dark matter simplified models are used to describe the primary production vertex. A displaced secondary vertex, characterised by the mass of the long-lived particle and its lifetime, is added for the displaced signature. We show how these models can be motivated by, and mapped onto, complete models such as gauge-mediated SUSY breaking and models of neutral naturalness. We also outlinemore » how this approach may be used to extend other simplified models to incorporate displaced signatures and to characterise searches for longlived charged particles. Displaced vertices are a striking signature which is often virtually background free, and thus provide an excellent target for the high-luminosity run of the Large Hadron Collider. The proposed models and searches provide a first step towards a systematic broadening of the displaced dark matter search programme.« less

  9. Simplified models for displaced dark matter signatures

    DOE PAGES

    Buchmueller, Oliver; De Roeck, Albert; Hahn, Kristian; ...

    2017-09-18

    We propose a systematic programme to search for long-lived neutral particle signatures through a minimal set of displaced =E T searches (dMETs). Here, our approach is to extend the well-established dark matter simpli ed models to include displaced vertices. The dark matter simplified models are used to describe the primary production vertex. A displaced secondary vertex, characterised by the mass of the long-lived particle and its lifetime, is added for the displaced signature. We show how these models can be motivated by, and mapped onto, complete models such as gauge-mediated SUSY breaking and models of neutral naturalness. We also outlinemore » how this approach may be used to extend other simplified models to incorporate displaced signatures and to characterise searches for longlived charged particles. Displaced vertices are a striking signature which is often virtually background free, and thus provide an excellent target for the high-luminosity run of the Large Hadron Collider. The proposed models and searches provide a first step towards a systematic broadening of the displaced dark matter search programme.« less

  10. Review of grain interior, grain boundary, and interface effects of K in CIGS solar cells: Mechanisms for performance enhancement

    DOE PAGES

    Muzzillo, Christopher P.

    2017-07-16

    Introducing K into Cu(In,Ga)(Se,S) 2 (CIGS) absorbers has led to recent world record power conversion efficiencies for thin film polycrystalline solar cells. In this work, the diverse phenomena associated with K in CIGS were reviewed, and overarching mechanisms were identified. The effects of K depend on its distribution among grain interiors (GIs), grain boundaries (GBs), and interfaces. High substrate Na and low temperature favor GI K incorporation, while low Na and high temperature favor segregation of K at GBs. Depositing KInSe 2 (or KIn 1-yGaySe 2) by co-evaporation or KF post-deposition treatment onto CIGS reduces buffer interface recombination in themore » final solar cells. KInSe 2 decomposes in air, which makes characterization difficult and may affect performance. In conclusion, the mechanism for reduced interface recombination could be direct passivation, beneficial compound precursor, oxidation barrier, or favorable diffusion alteration.« less

  11. Review of grain interior, grain boundary, and interface effects of K in CIGS solar cells: Mechanisms for performance enhancement

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Muzzillo, Christopher P.

    Introducing K into Cu(In,Ga)(Se,S) 2 (CIGS) absorbers has led to recent world record power conversion efficiencies for thin film polycrystalline solar cells. In this work, the diverse phenomena associated with K in CIGS were reviewed, and overarching mechanisms were identified. The effects of K depend on its distribution among grain interiors (GIs), grain boundaries (GBs), and interfaces. High substrate Na and low temperature favor GI K incorporation, while low Na and high temperature favor segregation of K at GBs. Depositing KInSe 2 (or KIn 1-yGaySe 2) by co-evaporation or KF post-deposition treatment onto CIGS reduces buffer interface recombination in themore » final solar cells. KInSe 2 decomposes in air, which makes characterization difficult and may affect performance. In conclusion, the mechanism for reduced interface recombination could be direct passivation, beneficial compound precursor, oxidation barrier, or favorable diffusion alteration.« less

  12. Ar-40 to Ar-39 ages of the large impact structures Kara and Manicouagan and their relevance to the Cretaceous-Tertiary and the Triassic-Jurassic boundary

    NASA Technical Reports Server (NTRS)

    Trieloff, M.; Jessberger, E. K.

    1992-01-01

    Since the discovery of the Ir enrichment in Cretaceous-Tertiary boundary clays in 1980, the effects of a 10-km asteroid impacting on the Earth 65 Ma ago have been discussed as the possible reason for the mass extinction--including the extinction of the dinosaurs--at the end of the Cretaceous. But up to now no crater of this age that is large enough (ca. 200 km in diameter) has been found. One candidate is the Kara Crater in northern Siberia. Kolesnikov et al. determined a K-Ar isochron of 65.6 +/- 0.5 Ma, indistinguishable from the age of the K-T boundary and interpreted this as confirmation of earlier proposals that the Kara bolide would have been at least one of the K-T impactors. Koeberl et al. determined Ar-40 to Ar-39 ages ranging from 70 to 82 Ma and suggested an association to the Campanian-Maastrichtian boundary, another important extinction horizon 73 Ma ago. We dated four impact melts, KA2-306, KA2-305, SA1-302, and AN9-182. Results from the investigation are discussed.

  13. Ar-40 to Ar-39 ages of the large impact structures Kara and Manicouagan and their relevance to the Cretaceous-Tertiary and the Triassic-Jurassic boundary

    NASA Astrophysics Data System (ADS)

    Trieloff, M.; Jessberger, E. K.

    Since the discovery of the Ir enrichment in Cretaceous-Tertiary boundary clays in 1980, the effects of a 10-km asteroid impacting on the Earth 65 Ma ago have been discussed as the possible reason for the mass extinction--including the extinction of the dinosaurs--at the end of the Cretaceous. But up to now no crater of this age that is large enough (ca. 200 km in diameter) has been found. One candidate is the Kara Crater in northern Siberia. Kolesnikov et al. determined a K-Ar isochron of 65.6 +/- 0.5 Ma, indistinguishable from the age of the K-T boundary and interpreted this as confirmation of earlier proposals that the Kara bolide would have been at least one of the K-T impactors. Koeberl et al. determined Ar-40 to Ar-39 ages ranging from 70 to 82 Ma and suggested an association to the Campanian-Maastrichtian boundary, another important extinction horizon 73 Ma ago. We dated four impact melts, KA2-306, KA2-305, SA1-302, and AN9-182. Results from the investigation are discussed.

  14. KEY COMPARISON: Final Report on EUROMET.T-K3: Regional key comparison of the realisations of the ITS-90 from 83.8058 K to 692.677 K

    NASA Astrophysics Data System (ADS)

    Renaot, E.; Hermier, Y.; Valin, M.; Bonnier, G.

    2007-01-01

    This report presents the results of the EUROMET regional key comparison corresponding to CCT-K3 and covering the temperature range from 83.8058 K (triple point of Ar) to 692.77 K (freezing point of Zn). The comparison involved the six NMIs previously involved in CCT-K3 (BNM-INM/CNAM, SMU, IMGC, NMi-VSL, NPL, PTB) and 18 European national laboratories. The comparison was divided into five different loops coordinated by a co-pilot chosen among the laboratories having participated in the CCT-K3 comparison. BNM-INM/CNAM played the role of pilot in establishing the link between the five loops. In each loop, an artefact in the form of a standard platinum resistance thermometer (SPRT) was circulated among the participant laboratories. In order to have sufficient information about the possible drift of the SPRTs, the co-pilots have performed a calibration over the full temperature range at the beginning and at the end of the loop. Each participant laboratory carried out the measurements in agreement with the protocol. After initial measurements of R(tpw) and successful annealing treatment, each calibration consisted of three measurements of R(t) at each fixed point, in separate realizations. Each measurement was followed by a measurement of R(tpw). The order of fixed points was Zn, Sn, In, Ga, Hg, Ar, but if a fixed point was not available, it was omitted. Values of W(t), and their average value, were calculated. The results were reported to the co-pilot and BNM-INM/CNAM, with uncertainty budgets and other specified data. The results of the comparison were analysed by BNM-INM/CNAM. For the sake of clarity, the results are firstly presented loop by loop. In a second step a EUROMET Reference Value (ERV) taking into account the whole comparison was defined. In order to calculate this ERV advantage was taken of the presence of BNM-INM/CNAM in the five loops; the differences between each laboratory's results and BNM-INM's were considered. The participant laboratories decided

  15. Dust devil signatures in infrasound records of the International Monitoring System

    NASA Astrophysics Data System (ADS)

    Lorenz, Ralph D.; Christie, Douglas

    2015-03-01

    We explore whether dust devils have a recognizable signature in infrasound array records, since several Comprehensive Nuclear-Test-Ban Treaty verification stations conducting continuous measurements with microbarometers are in desert areas which see dust devils. The passage of dust devils (and other boundary layer vortices, whether dust laden or not) causes a local temporary drop in pressure: the high-pass time domain filtering in microbarometers results in a "heartbeat" signature, which we observe at the Warramunga station in Australia. We also observe a ~50 min pseudoperiodicity in the occurrence of these signatures and some higher-frequency infrasound. Dust devils do not significantly degrade the treaty verification capability. The pipe arrays for spatial averaging used in infrasound monitoring degrade the detection efficiency of small devils, but the long observation time may allow a useful census of large vortices, and thus, the high-sensitivity infrasonic array data from the monitoring network can be useful in studying columnar vortices in the lower atmosphere.

  16. Upper bound on neutrino mass based on T2K neutrino timing measurements

    NASA Astrophysics Data System (ADS)

    Abe, K.; Adam, J.; Aihara, H.; Akiri, T.; Andreopoulos, C.; Aoki, S.; Ariga, A.; Assylbekov, S.; Autiero, D.; Barbi, M.; Barker, G. J.; Barr, G.; Bartet-Friburg, P.; Bass, M.; Batkiewicz, M.; Bay, F.; Berardi, V.; Berger, B. E.; Berkman, S.; Bhadra, S.; Blaszczyk, F. d. M.; Blondel, A.; Bojechko, C.; Bolognesi, S.; Bordoni, S.; Boyd, S. B.; Brailsford, D.; Bravar, A.; Bronner, C.; Buchanan, N.; Calland, R. G.; Caravaca Rodríguez, J.; Cartwright, S. L.; Castillo, R.; Catanesi, M. G.; Cervera, A.; Cherdack, D.; Chikuma, N.; Christodoulou, G.; Clifton, A.; Coleman, J.; Coleman, S. J.; Collazuol, G.; Connolly, K.; Cremonesi, L.; Dabrowska, A.; Danko, I.; Das, R.; Davis, S.; de Perio, P.; De Rosa, G.; Dealtry, T.; Dennis, S. R.; Densham, C.; Dewhurst, D.; Di Lodovico, F.; Di Luise, S.; Dolan, S.; Drapier, O.; Duboyski, T.; Duffy, K.; Dumarchez, J.; Dytman, S.; Dziewiecki, M.; Emery-Schrenk, S.; Ereditato, A.; Escudero, L.; Feusels, T.; Finch, A. J.; Fiorentini, G. A.; Friend, M.; Fujii, Y.; Fukuda, Y.; Furmanski, A. P.; Galymov, V.; Garcia, A.; Giffin, S.; Giganti, C.; Gilje, K.; Goeldi, D.; Golan, T.; Gonin, M.; Grant, N.; Gudin, D.; Hadley, D. R.; Haegel, L.; Haesler, A.; Haigh, M. D.; Hamilton, P.; Hansen, D.; Hara, T.; Hartz, M.; Hasegawa, T.; Hastings, N. C.; Hayashino, T.; Hayato, Y.; Hearty, C.; Helmer, R. L.; Hierholzer, M.; Hignight, J.; Hillairet, A.; Himmel, A.; Hiraki, T.; Hirota, S.; Holeczek, J.; Horikawa, S.; Hosomi, F.; Huang, K.; Ichikawa, A. K.; Ieki, K.; Ieva, M.; Ikeda, M.; Imber, J.; Insler, J.; Irvine, T. J.; Ishida, T.; Ishii, T.; Iwai, E.; Iwamoto, K.; Iyogi, K.; Izmaylov, A.; Jacob, A.; Jamieson, B.; Jiang, M.; Johnson, R. A.; Johnson, S.; Jo, J. H.; Jonsson, P.; Jung, C. K.; Kabirnezhad, M.; Kaboth, A. C.; Kajita, T.; Kakuno, H.; Kameda, J.; Kanazawa, Y.; Karlen, D.; Karpikov, I.; Katori, T.; Kearns, E.; Khabibullin, M.; Khotjantsev, A.; Kielczewska, D.; Kikawa, T.; Kilinski, A.; Kim, J.; King, S.; Kisiel, J.; Kitching, P.; Kobayashi, T.; Koch, L.; Koga, T.; Kolaceke, A.; Konaka, A.; Kopylov, A.; Kormos, L. L.; Korzenev, A.; Koshio, Y.; Kropp, W.; Kubo, H.; Kudenko, Y.; Kurjata, R.; Kutter, T.; Lagoda, J.; Lamont, I.; Larkin, E.; Laveder, M.; Lawe, M.; Lazos, M.; Lindner, T.; Lister, C.; Litchfield, R. P.; Longhin, A.; Lopez, J. P.; Ludovici, L.; Magaletti, L.; Mahn, K.; Malek, M.; Manly, S.; Marino, A. D.; Marteau, J.; Martin, J. F.; Martins, P.; Martynenko, S.; Maruyama, T.; Matveev, V.; Mavrokoridis, K.; Mazzucato, E.; McCarthy, M.; McCauley, N.; McFarland, K. S.; McGrew, C.; Mefodiev, A.; Metelko, C.; Mezzetto, M.; Mijakowski, P.; Miller, C. A.; Minamino, A.; Mineev, O.; Missert, A.; Miura, M.; Moriyama, S.; Mueller, Th. A.; Murakami, A.; Murdoch, M.; Murphy, S.; Myslik, J.; Nakadaira, T.; Nakahata, M.; Nakamura, K. G.; Nakamura, K.; Nakayama, S.; Nakaya, T.; Nakayoshi, K.; Nantais, C.; Nielsen, C.; Nirkko, M.; Nishikawa, K.; Nishimura, Y.; Nowak, J.; O'Keeffe, H. M.; Ohta, R.; Okumura, K.; Okusawa, T.; Oryszczak, W.; Oser, S. M.; Ovsyannikova, T.; Owen, R. A.; Oyama, Y.; Palladino, V.; Palomino, J. L.; Paolone, V.; Payne, D.; Perevozchikov, O.; Perkin, J. D.; Petrov, Y.; Pickard, L.; Pinzon Guerra, E. S.; Pistillo, C.; Plonski, P.; Poplawska, E.; Popov, B.; Posiadala-Zezula, M.; Poutissou, J.-M.; Poutissou, R.; Przewlocki, P.; Quilain, B.; Radicioni, E.; Ratoff, P. N.; Ravonel, M.; Rayner, M. A. M.; Redij, A.; Reeves, M.; Reinherz-Aronis, E.; Riccio, C.; Rodrigues, P. A.; Rojas, P.; Rondio, E.; Roth, S.; Rubbia, A.; Ruterbories, D.; Rychter, A.; Sacco, R.; Sakashita, K.; Sánchez, F.; Sato, F.; Scantamburlo, E.; Scholberg, K.; Schoppmann, S.; Schwehr, J.; Scott, M.; Seiya, Y.; Sekiguchi, T.; Sekiya, H.; Sgalaberna, D.; Shah, R.; Shaker, F.; Shaw, D.; Shiozawa, M.; Short, S.; Shustrov, Y.; Sinclair, P.; Smith, B.; Smy, M.; Sobczyk, J. T.; Sobel, H.; Sorel, M.; Southwell, L.; Stamoulis, P.; Steinmann, J.; Still, B.; Suda, Y.; Suzuki, A.; Suzuki, K.; Suzuki, S. Y.; Suzuki, Y.; Tacik, R.; Tada, M.; Takahashi, S.; Takeda, A.; Takeuchi, Y.; Tanaka, H. K.; Tanaka, H. A.; Tanaka, M. M.; Terhorst, D.; Terri, R.; Thompson, L. F.; Thorley, A.; Tobayama, S.; Toki, W.; Tomura, T.; Totsuka, Y.; Touramanis, C.; Tsukamoto, T.; Tzanov, M.; Uchida, Y.; Vacheret, A.; Vagins, M.; Vasseur, G.; Wachala, T.; Wakamatsu, K.; Walter, C. W.; Wark, D.; Warzycha, W.; Wascko, M. O.; Weber, A.; Wendell, R.; Wilkes, R. J.; Wilking, M. J.; Wilkinson, C.; Williamson, Z.; Wilson, J. R.; Wilson, R. J.; Wongjirad, T.; Yamada, Y.; Yamamoto, K.; Yanagisawa, C.; Yano, T.; Yen, S.; Yershov, N.; Yokoyama, M.; Yoo, J.; Yoshida, K.; Yuan, T.; Yu, M.; Zalewska, A.; Zalipska, J.; Zambelli, L.; Zaremba, K.; Ziembicki, M.; Zimmerman, E. D.; Zito, M.; Żmuda, J.; T2K Collaboration

    2016-01-01

    The Tokai to Kamioka (T2K) long-baseline neutrino experiment consists of a muon neutrino beam, produced at the J-PARC accelerator, a near detector complex and a large 295-km-distant far detector. The present work utilizes the T2K event timing measurements at the near and far detectors to study neutrino time of flight as a function of derived neutrino energy. Under the assumption of a relativistic relation between energy and time of flight, constraints on the neutrino rest mass can be derived. The sub-GeV neutrino beam in conjunction with timing precision of order tens of ns provide sensitivity to neutrino mass in the few MeV /c2 range. We study the distribution of relative arrival times of muon and electron neutrino candidate events at the T2K far detector as a function of neutrino energy. The 90% C.L. upper limit on the mixture of neutrino mass eigenstates represented in the data sample is found to be mν2<5.6 MeV2/c4 .

  17. Collider Signal II:. Missing ET Signatures and Dark Matter Connection

    NASA Astrophysics Data System (ADS)

    Baer, Howard

    2010-08-01

    These lectures give an overview of aspects of missing ET signatures from new physics at the LHC, along with their important connection to dark matter physics. Mostly, I will concentrate on supersymmetric (SUSY) sources of ɆT, but will also mention Little Higgs models with T-parity (LHT) and universal extra dimensions (UED) models with KK-parity. Lecture 1 covers SUSY basics, model building and spectra computation. Lecture 2 addresses sparticle production and decay mechanisms at hadron colliders and event generation. Lecture 3 covers SUSY signatures at LHC, along with LHT and UED signatures for comparison. In Lecture 4, I address the dark matter connection, and how direct and indirect dark matter searches, along with LHC collider searches, may allow us to both discover and characterize dark matter in the next several years. Finally, the interesting scenario of Yukawa-unified SUSY is examined; this case works best if the dark matter turns out to be a mixture of axion/axino states, rather than neutralinos.

  18. Draft genome of Kocuria polaris CMS 76or(T) isolated from cyanobacterial mats, McMurdo Dry Valley, Antarctica: an insight into CspA family of proteins from Kocuria polaris CMS 76or(T).

    PubMed

    Gundlapally, Sathyanarayana Reddy; Ara, Srinivas; Sisinthy, Shivaji

    2015-10-01

    Kocuria polaris strain CMS 76or(T) is a gram-positive, orange-pigmented bacterium isolated from a cyanobacterial mat sample from a pond located in McMurdo Dry Valley, Antarctica. It is psychrotolerant, orange pigmented, hydrolyses starch and Tween 80 and reduces nitrate. We report the 3.78-Mb genome of K. polaris strain CMS 76or(T), containing 3416 coding sequences, including one each for 5S rRNA, 23S rRNA, 16S rRNA and 47 tRNA genes, and the G+C content of DNA is 72.8%. An investigation of Csp family of proteins from K. polaris strain CMS 76or(T) indicated that it contains three different proteins of CspA (peg.319, peg.2255 and 2832) and the length varied from 67 to 69 amino acids. The three different proteins contain all the signature amino acids and two RNA binding regions that are characteristic of CspA proteins. Further, the CspA from K. polaris strain CMS 76or(T) was different from CspA of four other species of the genus Kocuria, Cryobacterium roopkundense and E. coli indirectly suggesting the role of CspA of K. polaris strain CMS 76or(T) in psychrotolerant growth of the bacterium.

  19. The heliospheric sector boundary as a distented magnetic cloud

    NASA Technical Reports Server (NTRS)

    Crooker, N. U.; Intriligator, D. S.

    1995-01-01

    A magnetic cloud was detected both near Earth and by Pioneer 11 located 43 deg east of Earth at 4.8 AU. The magnetic field within the cloud rotated smoothly from toward to away polarity, marking sector boundary passage. Interpreted as a flux rope, the cloud had a vertical axis, implying that its cylindrical cross-section in the ecliptic plane was distended along the sector boundary by at least 43, forming an extensive occlusion in the heliospheric current sheet. At 1 AU the cloud had plasma signatures typical of a fast coronal mass ejection with low temperature and a leading shock. In contrast, at 4.8 AU, only the cloud signature remained. Its radial dimension was the same at both locations, consistent with little expansion beyond 1 AU. Energetic particle data at 4.8 AU show high fluxes preceding the cloud but not extending forward to the corotating shock that marked entry into the interaction region containing the cloud. The streaming direction was antisunward, consistent with possible acceleration in a low-beta region of field line draping around the cloud's western (upstream) end. The fluxes dropped upon entry into the cloud and became essentially isotropic one third of the way through it. On the basis of sector boundary characteristics published in the past, we suggest that distended clouds may be common heliospheric current sheet occlusions.

  20. Modeling the urban boundary layer

    NASA Technical Reports Server (NTRS)

    Bergstrom, R. W., Jr.

    1976-01-01

    A summary and evaluation is given of the Workshop on Modeling the Urban Boundary Layer; held in Las Vegas on May 5, 1975. Edited summaries from each of the session chairpersons are also given. The sessions were: (1) formulation and solution techniques, (2) K-theory versus higher order closure, (3) surface heat and moisture balance, (4) initialization and boundary problems, (5) nocturnal boundary layer, and (6) verification of models.

  1. A Novel Certificateless Signature Scheme for Smart Objects in the Internet-of-Things.

    PubMed

    Yeh, Kuo-Hui; Su, Chunhua; Choo, Kim-Kwang Raymond; Chiu, Wayne

    2017-05-01

    Rapid advances in wireless communications and pervasive computing technologies have resulted in increasing interest and popularity of Internet-of-Things (IoT) architecture, ubiquitously providing intelligence and convenience to our daily life. In IoT-based network environments, smart objects are embedded everywhere as ubiquitous things connected in a pervasive manner. Ensuring security for interactions between these smart things is significantly more important, and a topic of ongoing interest. In this paper, we present a certificateless signature scheme for smart objects in IoT-based pervasive computing environments. We evaluate the utility of the proposed scheme in IoT-oriented testbeds, i.e., Arduino Uno and Raspberry PI 2. Experiment results present the practicability of the proposed scheme. Moreover, we revisit the scheme of Wang et al. (2015) and revealed that a malicious super type I adversary can easily forge a legitimate signature to cheat any receiver as he/she wishes in the scheme. The superiority of the proposed certificateless signature scheme over relevant studies is demonstrated in terms of the summarized security and performance comparisons.

  2. A Novel Certificateless Signature Scheme for Smart Objects in the Internet-of-Things

    PubMed Central

    Yeh, Kuo-Hui; Su, Chunhua; Choo, Kim-Kwang Raymond; Chiu, Wayne

    2017-01-01

    Rapid advances in wireless communications and pervasive computing technologies have resulted in increasing interest and popularity of Internet-of-Things (IoT) architecture, ubiquitously providing intelligence and convenience to our daily life. In IoT-based network environments, smart objects are embedded everywhere as ubiquitous things connected in a pervasive manner. Ensuring security for interactions between these smart things is significantly more important, and a topic of ongoing interest. In this paper, we present a certificateless signature scheme for smart objects in IoT-based pervasive computing environments. We evaluate the utility of the proposed scheme in IoT-oriented testbeds, i.e., Arduino Uno and Raspberry PI 2. Experiment results present the practicability of the proposed scheme. Moreover, we revisit the scheme of Wang et al. (2015) and revealed that a malicious super type I adversary can easily forge a legitimate signature to cheat any receiver as he/she wishes in the scheme. The superiority of the proposed certificateless signature scheme over relevant studies is demonstrated in terms of the summarized security and performance comparisons. PMID:28468313

  3. Electrical Resistivity Measurement of Cu and Zn on the Pressure-Dependent Melting Boundary

    NASA Astrophysics Data System (ADS)

    Secco, R. A.; Ezenwa, I.; Yong, W.

    2016-12-01

    Understanding how the core cools through heat conduction and modelling the geodynamo requires knowledge of the thermal and electrical conductivity of solid and liquid Fe and its relevant alloys at high pressures. It has been proposed that electrical resistivity of a pure metal is constant along its P-dependent melting boundary (Stacey and Anderson, PEPI, 2001). If confirmed, this invariant behavior could serve as a practical tool for low P studies to assess electrical resistivity of Earth's core. Since Earth's inner core boundary (ICB) is a melting boundary of mainly Fe, measurements of electrical resistivity of Fe at the melting boundary, under any P, would serve as a proxy for the resistivity at the ICB. A revised treatment (Stacey and Loper, PEPI, 2007) accounted for s-d scattering in transition metals with unfilled d-bands and limited the proposal to metals with electrons of the same type in filled d-band metals. To test this proposal, we made high P, T measurements of electrical resistivity of d-band filled Cu and Zn in solid and liquid states. Experiments were carried out in a 1000 ton cubic anvil press up to 5 GPa and 300K above melting temperatures. Two thermocouples placed at opposite ends of the wire sample served as T probes as well as 4-wire resistance electrodes in a switched circuit. A polarity switch was used to remove any bias voltage measurement using thermocouple legs. Electron microprobe analyses were used to check the compositions of the recovered samples. The expected resistivity decrease with P and increase with T were found and comparisons with 1atm data are in very good agreement. Within the error of measurement, the resistivity values of Cu decrease along the melting boundary while Zn appears to support the hypothesis of constant resistivity along the melting boundary.

  4. Chicxulub ejecta at the Cretaceous-Paleogene (K-P) boundary in Northeastern Mexico

    NASA Astrophysics Data System (ADS)

    Schulte, Peter; Kontny, Agnes

    2005-04-01

    The combined petrological and rock magnetic study of the Cretaceous-Paleogene (K-P) boundary in northeastern Mexico revealed compositionally and texturally complex Chicxulub ejecta deposits. The predominant silicic ejecta components are Fe-Mg-rich chlorite and Si-Al-K-rich glass spherules with carbonate inclusions and schlieren. Besides these silica phases, the most prominent ejecta component is carbonate. Carbonate occurs as lithic clasts, accretionary lapilli, melt globules (often with quench textures), and as microspar. The composition of the spherules provides evidence for a range of target rocks of mafic to intermediate composition, presumably situated in the northwestern sector of the Chicxulub impact structure. The abundance of carbonate ejecta suggests that this area received ejecta mainly from shallow, carbonate-rich lithologies. Rare µm-sized metallic and sulfidic Ni-Co-rich inclusions in the spherules indicate a possible contamination by meteoritic material. This complex composition underlines the similarities of ejecta in NE Mexico to Chicxulub ejecta from K-P sections worldwide. Although the ejecta display a great variability, the magnetic susceptibility, remanence, and hysteresis properties of the ejecta deposits are fairly homogeneous, with dominantly paramagnetic susceptibilities and a weak ferromagnetic contribution from hematite and goethite. The absence of spinels and the ubiquitous presence of hematite and goethite points to high oxygen fugacity during the impact process. The microfacies and internal texture of the ejecta deposits show welding and fusing of components, as well as evidence for liquid immiscibility between silicic and carbonate melts. No evidence for binary mixing of ejecta phases was found. Therefore, Chicxulub ejecta in NE Mexico probably derived from less energetic parts of the ejecta curtain. However, welding features of ejecta particles and enclosed marl clasts and/or benthic foraminifera from a siliciclastic environment

  5. Tektite-bearing, deep-water clastic unit at the Cretaceous-Tertiary boundary in northeastern Mexico

    NASA Technical Reports Server (NTRS)

    Smit, J.; Montanari, A.; Swinburne, N. H.; Alvarez, W.; Hildebrand, A. R.; Margolis, S. V.; Claeys, P.; Lowrie, W.; Asaro, F.

    1992-01-01

    The hypothesis of Cretaceous-Tertiary (K-T) boundary impact on Yucatan, Mexico, predicts that nearby sites should show evidence of proximal impact ejecta and disturbance by giant waves. An outcrop along the Arroyo el Mimbral in northeastern Mexico contains a layered clastic unit up to 3 m thick that interrupts a biostratigraphically complete pelagic-marl sequence deposited at more than 400 m water depth. The marls were found to be unsuitable for determining magnetostratigraphy, but foraminiferal biostratigraphy places the clastic unit precisely at the K-T boundary. We interpret this clastic unit as the deposit of a megawave or tsunami produced by an extraterrestrial impact. The clastic unit comprises three main subunits. (1) The basal "spherule bed" contains glass in the form of tektites and microtektites, glass spherules replaced by chlorite-smectite and calcite, and quartz grains showing probable shock features. This bed is interpreted as a channelized deposit of proximal ejecta. (2) A set of lenticular, massive, graded "laminated beds" contains intraclasts and abundant plant debris, and may be the result of megawave backwash that carried coarse debris from shallow parts of the continental margin into deeper water. (3) At the top, several thin "ripple beds" composed of fine sand are separated by clay drapes; they are interpreted as deposits of oscillating currents, perhaps a seiche. An iridium anomaly (921 +/- 23 pg/g) is observed at the top of the ripple beds. Our observations at the Mimbral locality support the hypothesis of a K-T impact on nearby Yucatan.

  6. EURAMET.T-K7 Key Comparison of Water Triple-Point Cells

    NASA Astrophysics Data System (ADS)

    Peruzzi, A.; Bosma, R.; Kerkhof, O.; Rosenkranz, P.; Del Campo Maldonado, M. D.; Strnad, R.; Nielsen, J.; Anagnostou, M.; Veliki, T.; Zvizdic, D.; Grudnewicz, E.; Nedea, M.; Neagu, D. M.; Steur, P.; Filipe, E.; Lobo, I.; Antonsen, I.; Renaot, E.; Heinonen, M.; Weckstrom, T.; Bojkovski, J.; Turzo-Andras, E.; Nemeth, S.; White, M.; Tegeler, E.; Dobre, M.; Duris, S.; Kartal Dogan, A.; Uytun, A.; Augevicius, V.; Pauzha, A.; Pokhodun, A.; Simic, S.

    2011-12-01

    The results of a EURAMET key comparison of water triple-point cells (EURAMET.T-K7) are reported. The equipment used, the measuring conditions applied, and the procedures adopted for the water triple-point measurement at the participating laboratories are synthetically presented. The definitions of the national reference for the water triple-point temperature adopted by each laboratory are disclosed. The multiplicity of degrees of equivalence arising for the linking laboratories with respect to the "mother" comparison CCT-K7 is discussed in detail.

  7. Shear response of grain boundaries with metastable structures by molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Zhang, Liang; Lu, Cheng; Shibuta, Yasushi

    2018-04-01

    Grain boundaries (GBs) can play a role as the favored locations to annihilate point defects, such as interstitial atoms and vacancies. It is thus highly probable that different boundary structures can be simultaneously present in equilibrium with each other in the same GB, and thus the GB achieves a metastable state. However, the structural transition and deformation mechanism of such GBs are currently not well understood. In this work, molecular dynamics simulations were carried out to study the multiple structures of a Σ5(310)/[001] GB in bicrystal Al and to investigate the effect of structural multiplicity on the mechanical and kinetic properties of such a GB. Different GB structures were obtained by changing the starting atomic configuration of the bicrystal model, and the GB structures had significantly different atomic density. For the Σ5(310) GB with metastable structures, GB sliding was the dominant mechanism at a low temperature (T = 10 K) under shear stress. The sliding mechanism resulted from the uncoordinated transformation of the inhomogeneous structural units. The nucleation of voids was observed during GB sliding at the low temperature, and the voids subsequently evolved to a nanocrack at the boundary plane. Increasing the temperature can induce the structural transition of local GB structures and can change their overall kinetic properties. GB migration with occasional GB sliding dominated the deformation mechanism at elevated temperatures (T = 300 and 600 K), and the migration process of the metastable GB structures is closely related to the thermally assisted diffusion mechanism.

  8. Loss of Oncogenic Notch1 with Resistance to a PI3K Inhibitor in T Cell Leukaemia

    PubMed Central

    Dail, Monique; Wong, Jason; Lawrence, Jessica; O’Connor, Daniel; Nakitandwe, Joy; Chen, Shann-Ching; Xu, Jin; Lee, Leslie B; Akagi, Keiko; Li, Qing; Aster, Jon C.; Pear, Warren S.; Downing, James R; Sampath, Deepak; Shannon, Kevin

    2014-01-01

    Mutations that deregulate Notch1 and Ras/PI3 kinase/Akt signalling are prevalent in T lineage acute lymphoblastic leukaemia (T-ALL), and often coexist. The PI3 kinase inhibitor GDC-0941 was active against primary T-ALLs from wild-type and KrasG12D mice and addition of the MEK inhibitor PD0325901 increased efficacy. Mice invariably relapsed after treatment with drug resistant clones, most of which unexpectedly had reduced levels of activated Notch1 protein, down-regulated many Notch1 target genes, and exhibited cross-resistance to γ secretase inhibitors. Multiple resistant primary T-ALLs that emerged in vivo did not contain somatic Notch1 mutations present in the parental leukaemia. Importantly, resistant clones up-regulated PI3K signalling. Consistent with these data, inhibiting Notch1 activated the PI3K pathway, providing a likely mechanism for selection against oncogenic Notch1 signalling. These studies validate PI3K as a therapeutic target in T-ALL and raise the unexpected possibility that dual inhibition of PI3K and Notch1 signalling could facilitate drug resistance in T-ALL. PMID:25043004

  9. Anisotropic H c 2 , thermodynamic and transport measurements, and pressure dependence of T c in K 2 Cr 3 As 3 single crystals

    DOE PAGES

    Kong, Tai; Bud'ko, Sergey L.; Canfield, Paul C.

    2015-01-30

    We present a detailed study of single crystalline K 2Cr 3As 3 and analyze its thermodynamic and transport properties, anisotropic H c2(T), and initial pressure dependence of T c. In zero field, the temperature-dependent resistivity is metallic. Deviation from a linear temperature dependence is evident below 100 K and a T 3 dependence is roughly followed from just above T c (~10K) to ~40K. Anisotropic H c2(T) data were measured up to 140 kOe with field applied along and perpendicular to the rodlike crystals. For the applied field perpendicular to the rod, H c2(T) is linear with a slope ~–70more » kOe/K. For field applied along the rod, the slope is about –120 kOe/K below 70 kOe. Above 70 kOe, the magnitude of the slope decreases to ~–70 kOe/K. The electronic specific heat coefficient γ, just above T c, is 73 mJ/mol K 2; the Debye temperature Θ D is 220 K. As a result, the specific heat jump at the superconducting transition ΔC~2.2γT c. Finally, for hydrostatic pressures up to ~7 kbar, T c decreases under pressure linearly at a rate of –0.034K/kbar.« less

  10. Mutational signature analysis identifies MUTYH deficiency in colorectal cancers and adrenocortical carcinomas: Mutational signature associated with MUTYH deficiency in cancers

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Pilati, Camilla; Shinde, Jayendra; Alexandrov, Ludmil B.

    Germline alterations in DNA repair genes are implicated in cancer predisposition and can result in characteristic mutational signatures. However, specific mutational signatures associated with base excision repair (BER) defects remain to be characterized. Here, by analysing a series of colorectal cancers (CRCs) using exome sequencing, we identified a particular spectrum of somatic mutations characterized by an enrichment of C > A transversions in NpCpA or NpCpT contexts in three tumours from a MUTYH-associated polyposis (MAP) patient and in two cases harbouring pathogenic germline MUTYH mutations. In two series of adrenocortical carcinomas (ACCs), we identified four tumours with a similar signaturemore » also presenting germline MUTYH mutations. Altogether, these findings demonstrate that MUTYH inactivation results in a particular mutational signature, which may serve as a useful marker of BER-related genomic instability in new cancer types.« less

  11. Mutational signature analysis identifies MUTYH deficiency in colorectal cancers and adrenocortical carcinomas: Mutational signature associated with MUTYH deficiency in cancers

    DOE PAGES

    Pilati, Camilla; Shinde, Jayendra; Alexandrov, Ludmil B.; ...

    2017-03-29

    Germline alterations in DNA repair genes are implicated in cancer predisposition and can result in characteristic mutational signatures. However, specific mutational signatures associated with base excision repair (BER) defects remain to be characterized. Here, by analysing a series of colorectal cancers (CRCs) using exome sequencing, we identified a particular spectrum of somatic mutations characterized by an enrichment of C > A transversions in NpCpA or NpCpT contexts in three tumours from a MUTYH-associated polyposis (MAP) patient and in two cases harbouring pathogenic germline MUTYH mutations. In two series of adrenocortical carcinomas (ACCs), we identified four tumours with a similar signaturemore » also presenting germline MUTYH mutations. Altogether, these findings demonstrate that MUTYH inactivation results in a particular mutational signature, which may serve as a useful marker of BER-related genomic instability in new cancer types.« less

  12. The thermopower in the temperature range T(sub c)-1000K and the bank spectrum of Bi-based superconductors

    NASA Technical Reports Server (NTRS)

    Gasumyants, V. E.; Vladimirskaya, E. V.; Smirnov, V. I.; Kazanskiy, S. V.

    1995-01-01

    The temperature dependencies of thermopower, S, in the range T = T(sub c)-1000K as well as of resistivity and Hall coefficient in the range T = T(sub c)-300K for the single-phase ceramic samples Bi2Sr2Ca(1-x)Nd(x)Cu2O(y) have been measured. It was found that the S(T) dependencies in normal phase have three characteristic regions. Despite the fact that the S(T) dependencies in Bi-based high-T(sub c) superconductors (HTSC) differ essentially from ones in Y-based HTSC at T = T(sub c)-300K, the main feature of theirs (S(T) = const at high temperatures) retains in samples investigated at T is greater than 620K. The results obtained have been analyzed on the basis of the narrow-band model with the use of assumption of slight asymmetry of the conductive band. The band spectrum parameters of the samples studied have been calculated. An analysis of the tendencies in these parameters changes with samples composition varying enables to make the conclusion about the similarity of the main features of the conductive band structure in Y- and Bi-based HTSC.

  13. The Influence of Grain Boundary Fluids on the Recrystallization Behavior in Calcite: A Comparison of "dry" and "wet" Marble Mylonites

    NASA Astrophysics Data System (ADS)

    Schenk, O.; Urai, J.; Evans, B.

    2003-12-01

    Carbonate rocks are able to accumulate large amounts of strain and deform crystal-plastically even at low p-T conditions and thus, marble sequences are often the site of strain localization in the upper crust during late-stage deformation in mountain building processes. In this study we sought to identify the effect of fluids on grain boundary morphology and recrystallization processes in marble mylonites during shear zone evolution, as fluids play a major role in the flow behavior of many rock materials during deformation (e.g. quartz, olivine, halite, feldspar). We compared calcite marble mylonites from two geological settings: (a) Schneeberg Complex, Southern Tyrole, Italy and (b) Naxos Metamorphic Core Complex, Greece. The shear zones of the selected areas are suitable for comparison, because they consist of similar lithology and the marble mylonites resemble each other in chemical composition. In addition, calcite-dolomite solvus geothermometry and TEM observations indicate similar p-T conditions for the shear zones formation. However, the two settings are different in the availability of fluids during the shear zone evolution: In the Schneeberg mylonites, both the alteration of minerals during retrograde metamorphism of neighboring micaschists and the existence of veins suggest that fluids were present during mylonitization. The absence of these features in the Naxos samples indicates that fluids were not present during deformation of these mylonites. This difference is also supported by the signature of stable isotopes. Microstructural investigations using optical and scanning electron microscopes on broken and planar surfaces did not indicate major differences between wet and dry mylonites: Grain boundaries of both types of samples display pores with shapes controlled by crystallography, and pore morphologies that are similar to observations from crack and grain-boundary healing experiments. Grain size reduction was predominantly the result of subgrain

  14. Phase boundary between cubic B1 and rhombohedral structures in (Mg,Fe)O magnesiowüstite determined by in situ X-ray diffraction measurements

    NASA Astrophysics Data System (ADS)

    Dymshits, Anna M.; Litasov, Konstantin D.; Shatskiy, Anton; Chanyshev, Artem D.; Podborodnikov, Ivan V.; Higo, Yuji

    2018-01-01

    The phase relations and equation of state of (Mg0.08Fe0.92)O magnesiowüstite (Mw92) have been studied using the Kawai-type high-pressure apparatus coupled with synchrotron radiation. To determine the phase boundary between the NaCl-type cubic (B1) and rhombohedral ( rB1) structures in Mw92, in situ X-ray observations were carried out at pressures of 0-35 GPa and temperatures of 300-1473 K. Au and MgO were used as the internal pressure markers and metallic Fe as oxygen fugacity buffer. The phase boundary between B1 and rB1 structures was described by a linear equation P (GPa) = 1.6 + 0.033 × T (K). The Clapeyron slope (d P/d T) determined in this study is close to that obtained at pressures above 70 GPa but steeper than that obtained for FeO. An addition of MgO to FeO structure expands the stability field of the rB1 phase to lower pressures and higher temperatures. Thus, the rB1 phase may be stabilized with respect to the B1 phase at a lower pressures. The pressure-volume-temperature equation of state of B1-Mw92 was determined up to 30 GPa and 1473 K. Fitting the hydrostatic compression data up to 30 GPa with the Birch-Murnaghan equation of state (EoS) yielded: unit cell volume ( V 0, T0), 79.23 ± 4 Å3; bulk modulus ( K 0, T0), 183 ± 4 GPa; its pressure derivative ( K' T ), 4.1 ± 0.4; (∂ K 0, T /∂ T) = -0.029 ± 0.005 GPa K‒1; a = 3.70 ± 0.27 × 10-5 K-1 and b = 0.47 ± 0.49 × 10-8 K-2, where α0, T = a + bT is the volumetric thermal expansion coefficient. The obtained bulk modulus of Mw92 is very close to the value expected for stoichiometric iron-rich (Mg,Fe)O. This result confirms the idea that the bulk modulus of (Mg,Fe)O is greatly affected by the actual defect structure, caused by either Mg2+ or vacancies.

  15. Trophic interactions in the benthic boundary layer of the Beaufort Sea shelf, Arctic Ocean: Combining bulk stable isotope and fatty acid signatures

    NASA Astrophysics Data System (ADS)

    Connelly, Tara L.; Deibel, Don; Parrish, Christopher C.

    2014-01-01

    The food web structure and diets of 26 taxa of benthic boundary layer (BBL) zooplankton on the Beaufort Sea shelf were studied using carbon and nitrogen stable isotopes and fatty acids. Mean δ15N values ranged from 7.3‰ for the amphipod Melita formosa to 14.9‰ for an unidentified polychaete, suggesting that taxa sampled came from three trophic levels. For 8 taxa, the lightest carbon signature occurred near the mouth of the Mackenzie River. Stable isotope ratios helped clarify the origin of signature fatty acids. Levels of certain polyunsaturated fatty acids (PUFA) were negatively correlated with δ15N, with the exception of 22:6ω3, which was positively correlated with δ15N, suggesting that this essential PUFA was retained through the food web. Discriminant analysis proved to be a powerful tool, predicting taxa from fatty acid profiles with 99% accuracy, and revealing strong phylogenetic trends in fatty acid profiles. The amphipod Arrhis phyllonyx had higher levels of ω6 PUFA, especially 20:4ω6 with several possible sources, than other peracarid crustaceans. The holothurian had high levels of odd numbered and branched chain fatty acids, indicative of bacterial consumption, while fatty acids of phytoplankton origin were important discriminants for Calanus hyperboreus and the chaetognaths Eukrohnia hamata and Parasagitta elegans. This relationship indicates that the conventional phytoplankton-copepod-chaetognath food web found in the water column also exists in the BBL. This observation, as well as generally low δ15N and high levels of certain PUFA in samples with lower δ15N, strongly suggests that BBL zooplankton on the Beaufort Sea shelf have access to fresh material of phytoplankton origin either by feeding on sedimenting matter or by active migration to surface waters.

  16. Minimum Total-Squared-Correlation Quaternary Signature Sets: New Bounds and Optimal Designs

    DTIC Science & Technology

    2009-12-01

    50, pp. 2433-2440, Oct. 2004. [11] G. S. Rajappan and M. L. Honig, “Signature sequence adaptation for DS - CDMA with multipath," IEEE J. Sel. Areas...OPTIMAL DESIGNS 3671 [14] C. Ding, M. Golin, and T. Kløve, “Meeting the Welch and Karystinos- Pados bounds on DS - CDMA binary signature sets," Des., Codes...Cryp- togr., vol. 30, pp. 73-84, Aug. 2003. [15] V. P. Ipatov, “On the Karystinos-Pados bounds and optimal binary DS - CDMA signature ensembles," IEEE

  17. Signatures support program

    NASA Astrophysics Data System (ADS)

    Hawley, Chadwick T.

    2009-05-01

    The Signatures Support Program (SSP) leverages the full spectrum of signature-related activities (collections, processing, development, storage, maintenance, and dissemination) within the Department of Defense (DOD), the intelligence community (IC), other Federal agencies, and civil institutions. The Enterprise encompasses acoustic, seismic, radio frequency, infrared, radar, nuclear radiation, and electro-optical signatures. The SSP serves the war fighter, the IC, and civil institutions by supporting military operations, intelligence operations, homeland defense, disaster relief, acquisitions, and research and development. Data centers host and maintain signature holdings, collectively forming the national signatures pool. The geographically distributed organizations are the authoritative sources and repositories for signature data; the centers are responsible for data content and quality. The SSP proactively engages DOD, IC, other Federal entities, academia, and industry to locate signatures for inclusion in the distributed national signatures pool and provides world-wide 24/7 access via the SSP application.

  18. Simple motion correction strategy reduces respiratory-induced motion artifacts for k-t accelerated and compressed-sensing cardiovascular magnetic resonance perfusion imaging.

    PubMed

    Zhou, Ruixi; Huang, Wei; Yang, Yang; Chen, Xiao; Weller, Daniel S; Kramer, Christopher M; Kozerke, Sebastian; Salerno, Michael

    2018-02-01

    Cardiovascular magnetic resonance (CMR) stress perfusion imaging provides important diagnostic and prognostic information in coronary artery disease (CAD). Current clinical sequences have limited temporal and/or spatial resolution, and incomplete heart coverage. Techniques such as k-t principal component analysis (PCA) or k-t sparcity and low rank structure (SLR), which rely on the high degree of spatiotemporal correlation in first-pass perfusion data, can significantly accelerate image acquisition mitigating these problems. However, in the presence of respiratory motion, these techniques can suffer from significant degradation of image quality. A number of techniques based on non-rigid registration have been developed. However, to first approximation, breathing motion predominantly results in rigid motion of the heart. To this end, a simple robust motion correction strategy is proposed for k-t accelerated and compressed sensing (CS) perfusion imaging. A simple respiratory motion compensation (MC) strategy for k-t accelerated and compressed-sensing CMR perfusion imaging to selectively correct respiratory motion of the heart was implemented based on linear k-space phase shifts derived from rigid motion registration of a region-of-interest (ROI) encompassing the heart. A variable density Poisson disk acquisition strategy was used to minimize coherent aliasing in the presence of respiratory motion, and images were reconstructed using k-t PCA and k-t SLR with or without motion correction. The strategy was evaluated in a CMR-extended cardiac torso digital (XCAT) phantom and in prospectively acquired first-pass perfusion studies in 12 subjects undergoing clinically ordered CMR studies. Phantom studies were assessed using the Structural Similarity Index (SSIM) and Root Mean Square Error (RMSE). In patient studies, image quality was scored in a blinded fashion by two experienced cardiologists. In the phantom experiments, images reconstructed with the MC strategy had higher

  19. Impact mineralogy and chemistry of the cretaceous-tertiary boundary at DSDP site 576

    NASA Technical Reports Server (NTRS)

    Bostwick, Jennifer A.; Kyte, Frank T.

    1993-01-01

    We have identified the K/T boundary in pelagic clay sediments from cores at DSDP Site 576 in the western North Pacific. Detailed geochemical and trace mineralogical analyses of this boundary section are in progress and initial results indicate similarities and differences relative to the only other clay core investigated in detail; DSDP Site 596, a locality in the western South Pacific. Peak Ir concentrations of 13 ng/g in DSDP Hole 576B are virtually identical with those observed in the South Pacific, but in the North Pacific this peak is much narrower and the integrated Ir fluence of 85 ng cm(exp -2) is 4 times lower (320 in Hole 596). Of the 34 elements measured, only Ir and Cr were found to have anomalous concentrations in K/T boundary samples. Trace mineral residues were obtained by washing away clays and sequential chemical leaches (including HF) to remove typical hydrogenous and biogenous sediment components (e.g., zeolites and radiolarian opal). We attempted to quantitatively recover the entire trace mineral assemblage for grains greater than 30 micrometers in diameter. Our mineral residues were dominated by two phases: quartz and magnesioferrite spinel. Other non-opaque mineral grains we have positively identified were trace K-feldspar, plagioclase, corundum, and muscovite. Of these only K-feldspar exhibited planar deformation features (PDF). We have not found abundant plagioclase, as in the South Pacific suggesting that this phase was either not preserved in the North Pacific, or that in the south, it has a non-impact (i.e., volcanic) source. PDF in quartz were commonly obscured by secondary overgrowths on the surfaces of quartz grains, presumably from diagenetic reprecipitation of silica dissolved from opaline radiolarian tests that are common in these sediments. However, careful examination revealed that most grains had multiple sets of PDF. Of the 133 quartz grains greater than 30 micrometers analyzed, 62 percent showed evidence of shock. The largest

  20. IAR signatures in the ionosphere: Modeling and observations at the Chibis-M microsatellite

    NASA Astrophysics Data System (ADS)

    Pilipenko, V.; Dudkin, D.; Fedorov, E.; Korepanov, V.; Klimov, S.

    2017-02-01

    A peculiar feature of geomagnetic variations at middle/low latitudes in the ULF band, just below the fundamental tone of the Schumann resonance, is the occurrence of a multi-band spectral resonant structure, observed by high-sensitivity induction magnetometers during nighttime. The occurrence of such spectral structure was commonly attributed to the Ionospheric Alfvén Resonator (IAR) in the upper ionosphere. Rather surprisingly, while ground observations of the IAR are ubiquitous, there are practically no reports on the IAR signatures from space missions. According to the new paradigm, the multi-band spectral structure excited by a lightning discharge is in fact produced by a regular sequence of an original pulse from a stroke and echo-pulses reflected from the IAR upper boundary. Upon the interaction of initial lightning-generated pulse with the anisotropic lower ionosphere, it partially penetrates into the ionosphere, travels up the ionosphere as an Alfvén pulse, and reflects back from the upper IAR boundary. The superposition of the initial pulse and echo-pulses produces spectra with multiple spectral peaks. Our modeling of Alfvénic pulse propagation in a system with the altitude profile of Alfven velocity modeling the realistic ionosphere has shown that IAR spectral signatures are to be evident only on the ground and above the IAR. Inside the IAR, the superposition of upward and downward propagating pulses produces a more complicated spectral pattern and the IAR spectral signatures deteriorate. We have used electric field data from the low-orbit Chibis-M microsatellite to search for IAR signatures in the ionosphere. We found evidence that the multi-band structure revealed by spectral analysis in the frequency range of interest is indeed the result of a sequence of lightning-produced pulses. According to the proposed conception it seems possible to comprehend why the IAR signatures are less evident in the ionosphere than on the ground.

  1. Crack growth behavior of 2219-T87 aluminum alloy from 20 K (-423 F) to 422 K (300 F)

    NASA Technical Reports Server (NTRS)

    Witzell, W. E.

    1973-01-01

    The aluminum alloy 2219-T87 has great potential for use as a cryogenic material for various manned and unmanned aerospace vehicles. Although its properties are generally known, toughness characteristics in various grain directions when the material is machined from thick plates and subjected to various environments have not been documented. This program, sponsored by the NASA Johnson Space Center, was designed to determine these properties between 20 K (-423 F) and 423 K (300 F).

  2. Revealing Grain Boundary Sliding from Textures of a Deformed Nanocrystalline Pd–Au Alloy

    PubMed Central

    Skrotzki, Werner; Zhao, Yajun; Pukenas, Aurimas; Birringer, Rainer

    2018-01-01

    Employing a recent modeling scheme for grain boundary sliding [Zhao et al. Adv. Eng. Mater. 2017, doi:10.1002/adem.201700212], crystallographic textures were simulated for nanocrystalline fcc metals deformed in shear compression. It is shown that, as grain boundary sliding increases, the texture strength decreases while the signature of the texture type remains the same. Grain boundary sliding affects the texture components differently with respect to intensity and angular position. A comparison of a simulation and an experiment on a Pd–10 atom % Au alloy with a 15 nm grain size reveals that, at room temperature, the predominant deformation mode is grain boundary sliding contributing to strain by about 60%. PMID:29370130

  3. CD137+CD154- Expression As a Regulatory T Cell (Treg)-Specific Activation Signature for Identification and Sorting of Stable Human Tregs from In Vitro Expansion Cultures.

    PubMed

    Nowak, Anna; Lock, Dominik; Bacher, Petra; Hohnstein, Thordis; Vogt, Katrin; Gottfreund, Judith; Giehr, Pascal; Polansky, Julia K; Sawitzki, Birgit; Kaiser, Andrew; Walter, Jörn; Scheffold, Alexander

    2018-01-01

    Regulatory T cells (Tregs) are an attractive therapeutic tool for several different immune pathologies. Therapeutic Treg application often requires prolonged in vitro culture to generate sufficient Treg numbers or to optimize their functionality, e.g., via genetic engineering of their antigen receptors. However, purity of clinical Treg expansion cultures is highly variable, and currently, it is impossible to identify and separate stable Tregs from contaminating effector T cells, either ex vivo or after prior expansion. This represents a major obstacle for quality assurance of expanded Tregs and raises significant safety concerns. Here, we describe a Treg activation signature that allows identification and sorting of epigenetically imprinted Tregs even after prolonged in vitro culture. We show that short-term reactivation resulted in expression of CD137 but not CD154 on stable FoxP3+ Tregs that displayed a demethylated Treg-specific demethylated region, high suppressive potential, and lack of inflammatory cytokine expression. We also applied this Treg activation signature for rapid testing of chimeric antigen receptor functionality in human Tregs and identified major differences in the signaling requirements regarding CD137 versus CD28 costimulation. Taken together, CD137+CD154- expression emerges as a universal Treg activation signature ex vivo and upon in vitro expansion allowing the identification and isolation of epigenetically stable antigen-activated Tregs and providing a means for their rapid functional testing in vitro .

  4. Estimation of Spatiotemporal Sensitivity Using Band-limited Signals with No Additional Acquisitions for k-t Parallel Imaging.

    PubMed

    Takeshima, Hidenori; Saitoh, Kanako; Nitta, Shuhei; Shiodera, Taichiro; Takeguchi, Tomoyuki; Bannae, Shuhei; Kuhara, Shigehide

    2018-03-13

    Dynamic MR techniques, such as cardiac cine imaging, benefit from shorter acquisition times. The goal of the present study was to develop a method that achieves short acquisition times, while maintaining a cost-effective reconstruction, for dynamic MRI. k - t sensitivity encoding (SENSE) was identified as the base method to be enhanced meeting these two requirements. The proposed method achieves a reduction in acquisition time by estimating the spatiotemporal (x - f) sensitivity without requiring the acquisition of the alias-free signals, typical of the k - t SENSE technique. The cost-effective reconstruction, in turn, is achieved by a computationally efficient estimation of the x - f sensitivity from the band-limited signals of the aliased inputs. Such band-limited signals are suitable for sensitivity estimation because the strongly aliased signals have been removed. For the same reduction factor 4, the net reduction factor 4 for the proposed method was significantly higher than the factor 2.29 achieved by k - t SENSE. The processing time is reduced from 4.1 s for k - t SENSE to 1.7 s for the proposed method. The image quality obtained using the proposed method proved to be superior (mean squared error [MSE] ± standard deviation [SD] = 6.85 ± 2.73) compared to the k - t SENSE case (MSE ± SD = 12.73 ± 3.60) for the vertical long-axis (VLA) view, as well as other views. In the present study, k - t SENSE was identified as a suitable base method to be improved achieving both short acquisition times and a cost-effective reconstruction. To enhance these characteristics of base method, a novel implementation is proposed, estimating the x - f sensitivity without the need for an explicit scan of the reference signals. Experimental results showed that the acquisition, computational times and image quality for the proposed method were improved compared to the standard k - t SENSE method.

  5. Low and middle altitude cusp particle signatures for general magnetopause reconnection rate variations. 1: Theory

    NASA Technical Reports Server (NTRS)

    Lockwood, M.; Smith, M. F.

    1994-01-01

    We present predictions of the signatures of magnetosheath particle precipitation (in the regions classified as open low-latitude boundary layer, cusp, mantle and polar cap) for periods when the interplanetary magnetic field has a southward component. These are made using the 'pulsating cusp' model of the effects of time-varying magnetic reconnection at the dayside magnetopause. Predictions are made for both low-altitude satellites in the topside ionosphere and for midaltitude spacecraft in the magnetosphere. Low-altitude cusp signatures, which show a continuous ion dispersion signature, reveal 'quasi-steady reconnection' (one limit of the pulsating cusp model), which persists for a period of at least 10 min. We estimate that 'quasi-steady' in this context corresponds to fluctuations in the reconnection rate of a factor of 2 or less. The other limit of the pulsating cusp model explains the instantaneous jumps in the precipitating ion spectrum that have been observed at low altitudes. Such jumps are produced by isolated pulses of reconnection: that is, they are separated by intervals when the reconnection rate is zero. These also generate convecting patches on the magnetopause in which the field lines thread the boundary via a rotational discontinuity separated by more extensive regions of tangential discontinuity. Predictions of the corresponding ion precipitation signatures seen by midaltitude spacecraft are presented. We resolve the apparent contradiction between estimates of the width of the injection region from midaltitude data and the concept of continuous entry of solar wind plasma along open field lines. In addition, we reevaluate the use of pitch angle-energy dispersion to estimate the injection distance.

  6. Thermodynamics and Equations of State of Iron to 350 GPa and 6000 K

    NASA Astrophysics Data System (ADS)

    Dorogokupets, P. I.; Dymshits, A. M.; Litasov, K. D.; Sokolova, T. S.

    2017-03-01

    The equations of state for solid (with bcc, fcc, and hcp structures) and liquid phases of Fe were defined via simultaneous optimization of the heat capacity, bulk moduli, thermal expansion, and volume at room and higher temperatures. The calculated triple points at the phase diagram have the following parameters: bcc-fcc-hcp is located at 7.3 GPa and 820 K, bcc-fcc-liquid at 5.2 GPa and 1998 K, and fcc-hcp-liquid at 106.5 GPa and 3787 K. At conditions near the fcc-hcp-liquid triple point, the Clapeyron slope of the fcc-liquid curve is dT/dP = 12.8 K/GPa while the slope of the hcp-liquid curve is higher (dT/dP = 13.7 K/GPa). Therefore, the hcp-liquid curve overlaps the metastable fcc-liquid curve at pressures of about 160 GPa. At high-pressure conditions, the metastable bcc-hcp curve is located inside the fcc-Fe or liquid stability field. The density, adiabatic bulk modulus and P-wave velocity of liquid Fe calculated up to 328.9 GPa at adiabatic temperature conditions started from 5882 K (outer/inner core boundary) were compared to the PREM seismological model. We determined the density deficit of hcp-Fe at the inner core boundary (T = 5882 K and P = 328.9 GPa) to be 4.4%.

  7. Thermodynamics and Equations of State of Iron to 350 GPa and 6000 K.

    PubMed

    Dorogokupets, P I; Dymshits, A M; Litasov, K D; Sokolova, T S

    2017-03-06

    The equations of state for solid (with bcc, fcc, and hcp structures) and liquid phases of Fe were defined via simultaneous optimization of the heat capacity, bulk moduli, thermal expansion, and volume at room and higher temperatures. The calculated triple points at the phase diagram have the following parameters: bcc-fcc-hcp is located at 7.3 GPa and 820 K, bcc-fcc-liquid at 5.2 GPa and 1998 K, and fcc-hcp-liquid at 106.5 GPa and 3787 K. At conditions near the fcc-hcp-liquid triple point, the Clapeyron slope of the fcc-liquid curve is dT/dP = 12.8 K/GPa while the slope of the hcp-liquid curve is higher (dT/dP = 13.7 K/GPa). Therefore, the hcp-liquid curve overlaps the metastable fcc-liquid curve at pressures of about 160 GPa. At high-pressure conditions, the metastable bcc-hcp curve is located inside the fcc-Fe or liquid stability field. The density, adiabatic bulk modulus and P-wave velocity of liquid Fe calculated up to 328.9 GPa at adiabatic temperature conditions started from 5882 K (outer/inner core boundary) were compared to the PREM seismological model. We determined the density deficit of hcp-Fe at the inner core boundary (T = 5882 K and P = 328.9 GPa) to be 4.4%.

  8. Thermodynamics and Equations of State of Iron to 350 GPa and 6000 K

    PubMed Central

    Dorogokupets, P. I.; Dymshits, A. M.; Litasov, K. D.; Sokolova, T. S.

    2017-01-01

    The equations of state for solid (with bcc, fcc, and hcp structures) and liquid phases of Fe were defined via simultaneous optimization of the heat capacity, bulk moduli, thermal expansion, and volume at room and higher temperatures. The calculated triple points at the phase diagram have the following parameters: bcc–fcc–hcp is located at 7.3 GPa and 820 K, bcc–fcc–liquid at 5.2 GPa and 1998 K, and fcc–hcp–liquid at 106.5 GPa and 3787 K. At conditions near the fcc–hcp–liquid triple point, the Clapeyron slope of the fcc–liquid curve is dT/dP = 12.8 K/GPa while the slope of the hcp–liquid curve is higher (dT/dP = 13.7 K/GPa). Therefore, the hcp–liquid curve overlaps the metastable fcc–liquid curve at pressures of about 160 GPa. At high-pressure conditions, the metastable bcc–hcp curve is located inside the fcc-Fe or liquid stability field. The density, adiabatic bulk modulus and P-wave velocity of liquid Fe calculated up to 328.9 GPa at adiabatic temperature conditions started from 5882 K (outer/inner core boundary) were compared to the PREM seismological model. We determined the density deficit of hcp-Fe at the inner core boundary (T = 5882 K and P = 328.9 GPa) to be 4.4%. PMID:28262683

  9. Rb-Sr, Sm-Nd, K-Ca, O, and H isotopic study of Cretaceous-Tertiary boundary sediments, Caravaca, Spain: evidence for an oceanic impact site

    USGS Publications Warehouse

    DePaolo, D.J.; Kyte, F.T.; Marshall, B.D.; O'Neil, J.R.; Smit, J.

    1983-01-01

    Isotopic ratios and trace element abundances were measured on samples of Ir-enriched clay at the Cretaceous-Tertiary boundary, and in carbonate and marl from 5 cm below and 3 cm above the boundary. Samples were leached with acetic acid to remove carbonate, and with hydrochloric acid. Leachates and residues were measured. The Sr, Nd, O and H isotopic compositions of the boundary clay residues are distinct from those of the stratigraphically neighboring materials. The data indicate that most of the clay material was derived from a terrestrial source with relatively low 87Sr/86Sr and high 143Nd/144Nd ratios. The ??18O data suggest that the detritus has been modified by submarine weathering. K-Ca and Rb-Sr systematics, as well as O isotope ratios of K-feldspar spherules within the boundary clay, suggest that they are predominantly authigenic and may have formed after the time of deposition. However, Sm-Nd and Rb-Sr isotopic data indicate that the spherules contain relict material that provides information on the nature of the original detritus. The isotopic evidence for foreign terrestrial detritus in the boundary clay, the low rare earth element concentrations and high Ni concentration, support the hypothesis of a terminal Cretaceous asteroidal impact that produced a global layer of fallout. The data are most easily explained if the impact site was on oceanic crust rather than continental crust, and if a substantial fraction of the fallout was derived from relatively deep within the lithosphere (>3 km). This would probably require a single large impactor. ?? 1983.

  10. Multiwaveband simulation-based signature analysis of camouflaged human dismounts in cluttered environments with TAIThermIR and MuSES

    NASA Astrophysics Data System (ADS)

    Packard, Corey D.; Klein, Mark D.; Viola, Timothy S.; Hepokoski, Mark A.

    2016-10-01

    The ability to predict electro-optical (EO) signatures of diverse targets against cluttered backgrounds is paramount for signature evaluation and/or management. Knowledge of target and background signatures is essential for a variety of defense-related applications. While there is no substitute for measured target and background signatures to determine contrast and detection probability, the capability to simulate any mission scenario with desired environmental conditions is a tremendous asset for defense agencies. In this paper, a systematic process for the thermal and visible-through-infrared simulation of camouflaged human dismounts in cluttered outdoor environments is presented. This process, utilizing the thermal and EO/IR radiance simulation tool TAIThermIR (and MuSES), provides a repeatable and accurate approach for analyzing contrast, signature and detectability of humans in multiple wavebands. The engineering workflow required to combine natural weather boundary conditions and the human thermoregulatory module developed by ThermoAnalytics is summarized. The procedure includes human geometry creation, human segmental physiology description and transient physical temperature prediction using environmental boundary conditions and active thermoregulation. Radiance renderings, which use Sandford-Robertson BRDF optical surface property descriptions and are coupled with MODTRAN for the calculation of atmospheric effects, are demonstrated. Sensor effects such as optical blurring and photon noise can be optionally included, increasing the accuracy of detection probability outputs that accompany each rendering. This virtual evaluation procedure has been extensively validated and provides a flexible evaluation process that minimizes the difficulties inherent in human-subject field testing. Defense applications such as detection probability assessment, camouflage pattern evaluation, conspicuity tests and automatic target recognition are discussed.

  11. Origin of methane-rich natural gas at the West Pacific convergent plate boundary.

    PubMed

    Sano, Yuji; Kinoshita, Naoya; Kagoshima, Takanori; Takahata, Naoto; Sakata, Susumu; Toki, Tomohiro; Kawagucci, Shinsuke; Waseda, Amane; Lan, Tefang; Wen, Hsinyi; Chen, Ai-Ti; Lee, Hsiaofen; Yang, Tsanyao F; Zheng, Guodong; Tomonaga, Yama; Roulleau, Emilie; Pinti, Daniele L

    2017-11-15

    Methane emission from the geosphere is generally characterized by a radiocarbon-free signature and might preserve information on the deep carbon cycle on Earth. Here we report a clear relationship between the origin of methane-rich natural gases and the geodynamic setting of the West Pacific convergent plate boundary. Natural gases in the frontal arc basin (South Kanto gas fields, Northeast Japan) show a typical microbial signature with light carbon isotopes, high CH 4 /C 2 H 6 and CH 4 / 3 He ratios. In the Akita-Niigata region - which corresponds to the slope stretching from the volcanic-arc to the back-arc -a thermogenic signature characterize the gases, with prevalence of heavy carbon isotopes, low CH 4 /C 2 H 6 and CH 4 / 3 He ratios. Natural gases from mud volcanoes in South Taiwan at the collision zone show heavy carbon isotopes, middle CH 4 /C 2 H 6 ratios and low CH 4 / 3 He ratios. On the other hand, those from the Tokara Islands situated on the volcanic front of Southwest Japan show the heaviest carbon isotopes, middle CH 4 /C 2 H 6 ratios and the lowest CH 4 / 3 He ratios. The observed geochemical signatures of natural gases are clearly explained by a mixing of microbial, thermogenic and abiotic methane. An increasing contribution of abiotic methane towards more tectonically active regions of the plate boundary is suggested.

  12. Variations in plasma wave intensity with distance along the electron foreshock boundary at Venus

    NASA Technical Reports Server (NTRS)

    Crawford, G. K.; Strangeway, R. J.; Russell, C. T.

    1991-01-01

    Plasma waves are observed in the solar wind upstream of the Venus bow shock by the Pioneer Venus Orbiter. These wave signatures occur during periods when the interplanetary magnetic field through the spacecraft position intersects the bow shock, thereby placing the spacecraft in the foreshock region. Wave intensity is analyzed as a function of distance along the electron foreshock boundary. It is found that the peak wave intensity may increase along the foreshock boundary from the tangent point to a maximum value at several Venus radii, then decrease in intensity with subsequent increase in distance. These observations could be associated with the instability process: the instability of the distribution function increasing with distance from the tangent point to saturation at the peak. Thermalization of the beam for distances beyond this point could reduce the distribution function instability resulting in weaker wave signatures.

  13. Effects of Wall Cooling on Hypersonic Boundary Layer Receptivity Over a Cone

    NASA Technical Reports Server (NTRS)

    Kara, K.; Balakumar, P.; Kandil, O. A.

    2008-01-01

    Effects of wall cooling on the receptivity process induced by the interaction of slow acoustic disturbances in the free-stream are numerically investigated for a boundary layer flow over a 5-degrees straight cone. The free-stream Mach number is 6.0 and the Reynolds number is 7.8x10(exp 6)/ft. Both the steady and unsteady solutions are obtained by solving the full Navier-Stokes equations using 5th-order accurate weighted essentially non-oscillatory (WENO) scheme for space discretization and using 3rd-order total variation diminishing (T VD) Runge-K utta scheme for time integration. Computations are performed for a cone with nose radius of 0.001 inch for adiabatic wall temperature (T(sub aw)), 0.75*T(sub aw), 0.5*T(sub aw), 0.40*T(sub aw), 0.30*T(sub aw), and 0.20*T(sub aw). Once the mean flow field is computed, disturbances are introduced at the upstream end of the computational domain. Generation of instability waves from leading edge region and receptivity of boundary layer to slow acoustic waves are investigated. Computations showed that wall cooling has strong stabilization effect on the first mode disturbances as was observed in the experiments. T ransition location moved to upstream when wall cooling was applied It is also found that the boundary layer is much more receptive to fast acoustic wave (by almost a factor of 50). When simulations performed using the same forcing frequency growth of the second mode disturbances are delayed with wall cooling and they attained values two times higher than that of adiabatic case. In 0.20*T(sub aw) case the transition Reynolds number is doubled compared to adiabatic conditions. The receptivity coefficient for adiabatic wall case (804 R) is 1.5225 and for highly cooled cones (241, and 161 R); they are in the order of 10(exp -3).

  14. Extraction of t slopes from experimental γ p → K + Λ and γ p → K + Σ 0 cross section data

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Freese, Adam; Puentes, Daniel; Adhikari, Shankar

    We analyze recent K + meson photoproduction data from the CLAS collaboration for the reactions γp → K +Λ and γp → K +Σ 0 , fitting measured forward-angle differential cross sections to the form AeBt. We develop a quantitative scheme for determining the kinematic region where the fit is to be done, and, from the extracted t-slope B, determine whether single-Reggeon exchange can explain the production mechanism. We find that, in the region 5 < s < 8.1 GeV2 , production of the K +Λ channel can be explained by single K + Reggeon exchange, but the K +Σmore » 0 production channel cannot. We verify these conclusions by fitting the data to a differential cross section produced by the interfering sum of two exponential amplitudes.« less

  15. Heat capacity and entropy at the temperatures 5 K to 720 K and thermal expansion from the temperatures 298 K to 573 K of synthetic enargite (Cu3AsS4)

    USGS Publications Warehouse

    Seal, R.R.; Robie, R.A.; Hemingway, B.S.; Evans, H.T.

    1996-01-01

    The heat capacity of synthetic Cu3AsS4 (enargite) was measured by quasi-adiabatic calorimetry from the temperatures 5 K to 355 K and by differential scanning calorimetry from T = 339 K to T = 720 K. Heat-capacity anomalies were observed at T = (58.5 ?? 0.5) K (??trsHom = 1.4??R??K; ??trsSom = 0.02??R) and at T = (66.5 ?? 0.5) K (??trsHom = 4.6??R??K; ??trsSom = 0.08??R), where R = 8.31451 J??K-1??mol-1. The causes of the anomalies are unknown. At T = 298.15 K, Cop,m and Som(T) are (190.4 ?? 0.2) J??K-1??mol-1 and (257.6 ?? 0.6) J??K-1??mol-1, respectively. The superambient heat capacities are described from T = 298.15 K to T = 944 K by the least-squares regression equation: Cop,m/(J??K-1??mol-1) = (196.7 ?? 1.2) + (0.0499 ?? 0.0016)??(T/K) -(1918 000 ?? 84 000)??(T/K)-2. The thermal expansion of synthetic enargite was measured from T = 298.15 K to T = 573 K by powder X-ray diffraction. The thermal expansion of the unit-cell volume (Z = 2) is described from T = 298.15 K to T = 573 K by the least-squares equation: V/pm3 = 106??(288.2 ?? 0.2) + 104??(1.49 ?? 0.04)??(T/K). ?? 1996 Academic Press Limited.

  16. Arroyo el Mimbral, Mexico, K/T unit: Origin as debris flow/turbidite, not a tsunami deposit

    NASA Technical Reports Server (NTRS)

    Bohor, Bruce F.; Betterton, William J.

    1993-01-01

    Coarse, spherule-bearing, elastic units have been discovered at 10 marine sites that span the K/T boundary in northeastern Mexico. We examined one of the best exposed sites in Arroyo el Mimbral, northwest of Tampico. The Mimbral outcrop displays a layered elastic unit up to 3 m thick enclosed by marly limestones of the Mendez (Latest Maastrichian) and Velasco (Earliest Danian) Formations. At its thickest point, this channelized elastic unit is comprised of 3 subunits: (1) a basal, poorly-sorted, ungraded calcareous spherule bed 1 m thick containing relict impact glass and shocked mineral grains, (2) a massive set of laminated calcite-cemented sandstones up to 2 m thick with plant debris at its base, (3) capped by a thin (up to 20 cm) set of rippled sandstone layers separated by silty mudstone drapes containing a small (921 pg/g) iridium anomaly. This tripartite elastic unit is conformably overlain by marls of the Velasco Formation. We also visited the La Lajilla site east of Ciudad Victoria; its stratigraphy is similar to Mimbral's, but its elastic beds are thinner and less extensive laterally. The Mimbral elastic unit has been interpreted previously as being deposited by a megawave or tsunami produced by an asteroid impact on nearby Yucatan (Chicxulub crater). However, a presumed 400-m paleodepth of water at the Mimbral site, channeling of the spherule subunit into the underlying Mendez Formation marls, and the overtopping of the basal, spherule-bearing subunit by the laminated sandstone subunit, all suggest a combined debris flow/turbidite origin for this elastic unit similar to that proposed for Upper Pleistocene sand/silt beds occurring elsewhere in the Gulf of Mexico. In this latter model, the sediment source region for the elastic unit is the lower continental shelf and slope escarpment. For the K/T unit at Mimbral, we propose that thick ejecta blanket deposits composed mostly of spherules were rapidly loaded onto the lower shelf and slope from an impact

  17. First Safety and Performance Evaluation of T45K, a Self-Assembling Peptide Barrier Hemostatic Device, After Skin Lesion Excision.

    PubMed

    Rahmani, George; Prats, Jayne; Norchi, Terrence; Kates, Steven; McInerney, Veronica; Woods, Jack; Kelly, Jack

    2018-01-29

    The self-assembling peptide barrier T45K (SAPB-T45K) is an oligopeptide that rapidly forms a biocompatible hemostatic barrier when applied to wounds. Evaluate safety and performance of SAPB-T45K in cutaneous surgery. In this single-blind study, after sequential shave excision of 2 lesions, wounds were randomized (intrapatient) to SAPB-T45K or control treatment. Safety was assessed at treatment, Day 7, and Day 30. Performance was evaluated using time to hemostasis (TTH) and ASEPSIS wound scores, with a subgroup analysis for patients with or without antiplatelet therapy. Each of 46 patients (10 [22%] with antiplatelet therapy) received randomized SAPB-T45K or control treatment for 2 wounds. Safety assessments were similar, and ASEPSIS scores reflected normal healing in both wound groups. SAPB-T45K demonstrated significantly faster median TTH (24.5 [range, 7-165] seconds) compared with control (44 [10-387] seconds), for a 41% median TTH reduction (18 [95% confidence interval, 7-35] seconds, p < .001). SAPB-T45K provided an identical median TTH of 24 seconds, regardless of antiplatelet therapy. Control median TTH was 90 and 40 seconds for patients taking or not taking antiplatelet therapy, respectively. SAPB-T45K provided significantly faster median TTH versus control, especially with antiplatelet therapy, and safety profiles were similar.This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.

  18. Introducing tectonically and thermo-mechanically realistic lithosphere in the models of plume head -lithosphere interactions (PLI) including intra-continental plate boundaries.

    NASA Astrophysics Data System (ADS)

    Guillou-Frottier, L.; Burov, E.; Cloetingh, S.

    2007-12-01

    Plume-Lithosphere Interactions (PLI) in continets have complex topographic and magmatic signatures and are often identified near boundaries between younger plates (e.g., orogenic) and older stable plates (e.g., cratons), which represent important geometrical, thermal and rheological barriers that interact with the emplacement of the plume head (e.g., Archean West Africa, East Africa, Pannonian - Carpathian system). The observable PLI signatures are conditioned by plume dynamics but also by complex rheology and structure of continental lithosphere. We address this problem by considering a new free-surface thermo-mechanical numerical model of PLI with two stratified elasto-viscous-plastic (EVP) continental plates of contrasting age, thickness and structure. The results show that: (1) surface deformation is poly-harmonic and contains smaller wavelengths (50-500 km) than that associated with the plume head (>1000 km). (2) below intra-plate boundaries, plume head flattening is asymmetric, it is blocked from one side by the cold vertical boundary of the older plate, which leads to mechanical decoupling of crust from mantle lithosphere, and to localized faulting at the cratonic margin; (2) the return flow from the plume head results in sub-vertical down-thrusting (delamination) of the lithosphere at the margin, producing sharp vertical cold boundary down to the 400 km depth; (3) plume head flattening and migration towards the younger plate results in concurrent surface extension above the centre of the plume and in compression (pushing), down-thrusting and magmatic events at the cratonic margin (down-thrusting is also produced at the opposite border of the younger plate); these processes may result in continental growth at the "craton side"; (4) topographic signatures of PLI show basin-scale uplifts and subsidences preferentially located at cratonic margins. Negative Rayleigh-Taylor instabilities in the lithosphere above the plume head provide a mechanism for crustal

  19. Association of tRNA methyltransferase NSUN2/IGF-II molecular signature with ovarian cancer survival.

    PubMed

    Yang, Jia-Cheng; Risch, Eric; Zhang, Meiqin; Huang, Chan; Huang, Huatian; Lu, Lingeng

    2017-09-01

    To investigate the association between NSUN2/IGF-II signature and ovarian cancer survival. Using a publicly accessible dataset of RNA sequencing and clinical follow-up data, we performed Classification and Regression Tree and survival analyses. Patients with NSUN2 high IGF-II low had significantly superior overall and disease progression-free survival, followed by NSUN2 low IGF-II low , NSUN2 high IGF-II high and NSUN2 low IGF-II high (p < 0.0001 for overall, p = 0.0024 for progression-free survival, respectively). The associations of NSUN2/IGF-II signature with the risks of death and relapse remained significant in multivariate Cox regression models. Random-effects meta-analyses show the upregulated NSUN2 and IGF-II expression in ovarian cancer versus normal tissues. The NSUN2/IGF-II signature associates with heterogeneous outcome and may have clinical implications in managing ovarian cancer.

  20. Slumping and a sandbar deposit at the Cretaceous-Tertiary boundary in the El Tecolote section (northeastern Mexico): An impact-induced sediment gravity flow

    NASA Astrophysics Data System (ADS)

    Soria, Ana R.; Liesa, Carlos L.; Mata, Maria Pilar; Arz, José A.; Alegret, Laia; Arenillas, Ignacio; Meléndez, Alfonso

    2001-03-01

    Slumps affecting uppermost Méndez Formation marls, as well as the spherulitic layer and basal part of the sandy deposits of the Cretaceous-Tertiary (K-T) boundary clastic unit, are described at the new K-T El Tecolote section (northeastern Mexico). These K-T clastic deposits represent sedimentation at middle-bathyal water depths in channel and nonchannel or levee areas of reworked materials coming from environments ranging from outer shelf to shallower slope via a unidirectional, high- to low-density turbidite flow. We emphasize the development and accretion of a lateral bar in a channel area from a surging low-density turbidity current and under a high-flow regime. The slumps discovered on land and the sedimentary processes of the K-T clastic unit reflect destabilization and collapse of the continental margin, support the mechanism of gravity flows in the deep sea, and represent important and extensive evidence for the impact effects in the Gulf of México triggered by the Chicxulub event.

  1. CD137+CD154− Expression As a Regulatory T Cell (Treg)-Specific Activation Signature for Identification and Sorting of Stable Human Tregs from In Vitro Expansion Cultures

    PubMed Central

    Nowak, Anna; Lock, Dominik; Bacher, Petra; Hohnstein, Thordis; Vogt, Katrin; Gottfreund, Judith; Giehr, Pascal; Polansky, Julia K.; Sawitzki, Birgit; Kaiser, Andrew; Walter, Jörn; Scheffold, Alexander

    2018-01-01

    Regulatory T cells (Tregs) are an attractive therapeutic tool for several different immune pathologies. Therapeutic Treg application often requires prolonged in vitro culture to generate sufficient Treg numbers or to optimize their functionality, e.g., via genetic engineering of their antigen receptors. However, purity of clinical Treg expansion cultures is highly variable, and currently, it is impossible to identify and separate stable Tregs from contaminating effector T cells, either ex vivo or after prior expansion. This represents a major obstacle for quality assurance of expanded Tregs and raises significant safety concerns. Here, we describe a Treg activation signature that allows identification and sorting of epigenetically imprinted Tregs even after prolonged in vitro culture. We show that short-term reactivation resulted in expression of CD137 but not CD154 on stable FoxP3+ Tregs that displayed a demethylated Treg-specific demethylated region, high suppressive potential, and lack of inflammatory cytokine expression. We also applied this Treg activation signature for rapid testing of chimeric antigen receptor functionality in human Tregs and identified major differences in the signaling requirements regarding CD137 versus CD28 costimulation. Taken together, CD137+CD154− expression emerges as a universal Treg activation signature ex vivo and upon in vitro expansion allowing the identification and isolation of epigenetically stable antigen-activated Tregs and providing a means for their rapid functional testing in vitro. PMID:29467769

  2. Paleolimnology of Lake Tanganyika, East Africa, over the past 100 k yr

    USGS Publications Warehouse

    Scholz, C.A.; King, J.W.; Ellis, G.S.; Swart, Peter K.; Stager, J.C.; Colman, Steven M.

    2003-01-01

    New sediment core data from a unique slow-sedimentation rate site in Lake Tanganyika contain a much longer and continuous record of limnological response to climate change than have been previously observed in equatorial regions of central Africa. The new core site was first located through an extensive seismic reflection survey over the Kavala Island Ridge (KIR), a sedimented basement high that separates the Kigoma and Kalemie Basins in Lake Tanganyika. Proxy analyses of paleoclimate response carried out on core T97-52V include paleomagnetic and index properties, TOC and isotopic analyses of organic carbon, and diatom and biogenic silica analyses. A robust age model based on 11 radiocarbon (AMS) dates indicates a linear, continuous sedimentation rate nearly an order of magnitude slower here compared to other core sites around the lake. This age model indicates continuous sedimentation over the past 79 k yr, and a basal age in excess of 100 k yr. The results of the proxy analyses for the past ??? 20 k yr are comparable to previous studies focused on that interval in Lake Tanganyika, and show that the lake was about 350 m lower than present at the Last Glacial Maximum (LGM). Repetitive peaks in TOC and corresponding drops in ??13C over the past 79 k yr indicate periods of high productivity and mixing above the T97-52V core site, probably due to cooler and perhaps windier conditions. From ??? 80 through ??? 58 k yr the ??13C values are relatively negative (-26 to -28???) suggesting predominance of algal contributions to bottom sediments at this site during this time. Following this interval there is a shift to higher values of ??13C, indicating a possible shift to C-4 pathway-dominated grassland-type vegetation in the catchment, and indicating cooler, dryer conditions from ??? 55 k yr through the LGM. Two seismic sequence boundaries are observed at shallow stratigraphic levels in the seismic reflection data, and the upper boundary correlates to a major discontinuity

  3. Entanglement on linked boundaries in Chern-Simons theory with generic gauge groups

    NASA Astrophysics Data System (ADS)

    Dwivedi, Siddharth; Singh, Vivek Kumar; Dhara, Saswati; Ramadevi, P.; Zhou, Yang; Joshi, Lata Kh

    2018-02-01

    We study the entanglement for a state on linked torus boundaries in 3 d Chern-Simons theory with a generic gauge group and present the asymptotic bounds of Rényi entropy at two different limits: (i) large Chern-Simons coupling k, and (ii) large rank r of the gauge group. These results show that the Rényi entropies cannot diverge faster than ln k and ln r, respectively. We focus on torus links T (2 , 2 n) with topological linking number n. The Rényi entropy for these links shows a periodic structure in n and vanishes whenever n = 0 (mod p), where the integer p is a function of coupling k and rank r. We highlight that the refined Chern-Simons link invariants can remove such a periodic structure in n.

  4. T-cell lymphomas associated gene expression signature: Bioinformatics analysis based on gene expression Omnibus.

    PubMed

    Zhou, Lei-Lei; Xu, Xiao-Yue; Ni, Jie; Zhao, Xia; Zhou, Jian-Wei; Feng, Ji-Feng

    2018-06-01

    Due to the low incidence and the heterogeneity of subtypes, the biological process of T-cell lymphomas is largely unknown. Although many genes have been detected in T-cell lymphomas, the role of these genes in biological process of T-cell lymphomas was not further analyzed. Two qualified datasets were downloaded from Gene Expression Omnibus database. The biological functions of differentially expressed genes were evaluated by gene ontology enrichment and KEGG pathway analysis. The network for intersection genes was constructed by the cytoscape v3.0 software. Kaplan-Meier survival curves and log-rank test were employed to assess the association between differentially expressed genes and clinical characters. The intersection mRNAs were proved to be associated with fundamental processes of T-cell lymphoma cells. These intersection mRNAs were involved in the activation of some cancer-related pathways, including PI3K/AKT, Ras, JAK-STAT, and NF-kappa B signaling pathway. PDGFRA, CXCL12, and CCL19 were the most significant central genes in the signal-net analysis. The results of survival analysis are not entirely credible. Our findings uncovered aberrantly expressed genes and a complex RNA signal network in T-cell lymphomas and indicated cancer-related pathways involved in disease initiation and progression, providing a new insight for biotargeted therapy in T-cell lymphomas. © 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  5. A Type I Interferon Transcriptional Signature Precedes Autoimmunity in Children Genetically at Risk for Type 1 Diabetes

    PubMed Central

    Ferreira, Ricardo C.; Guo, Hui; Coulson, Richard M.R.; Smyth, Deborah J.; Pekalski, Marcin L.; Burren, Oliver S.; Cutler, Antony J.; Doecke, James D.; Flint, Shaun; McKinney, Eoin F.; Lyons, Paul A.; Smith, Kenneth G.C.; Achenbach, Peter; Beyerlein, Andreas; Dunger, David B.; Clayton, David G.; Wicker, Linda S.; Bonifacio, Ezio

    2014-01-01

    Diagnosis of the autoimmune disease type 1 diabetes (T1D) is preceded by the appearance of circulating autoantibodies to pancreatic islets. However, almost nothing is known about events leading to this islet autoimmunity. Previous epidemiological and genetic data have associated viral infections and antiviral type I interferon (IFN) immune response genes with T1D. Here, we first used DNA microarray analysis to identify IFN-β–inducible genes in vitro and then used this set of genes to define an IFN-inducible transcriptional signature in peripheral blood mononuclear cells from a group of active systemic lupus erythematosus patients (n = 25). Using this predefined set of 225 IFN signature genes, we investigated the expression of the signature in cohorts of healthy controls (n = 87), patients with T1D (n = 64), and a large longitudinal birth cohort of children genetically predisposed to T1D (n = 109; 454 microarrayed samples). Expression of the IFN signature was increased in genetically predisposed children before the development of autoantibodies (P = 0.0012) but not in patients with established T1D. Upregulation of IFN-inducible genes was transient, temporally associated with a recent history of upper respiratory tract infections (P = 0.0064), and marked by increased expression of SIGLEC-1 (CD169), a lectin-like receptor expressed on CD14+ monocytes. DNA variation in IFN-inducible genes altered T1D risk (P = 0.007), as exemplified by IFIH1, one of the genes in our IFN signature for which increased expression is a known risk factor for disease. These findings identify transient increased expression of type I IFN genes in preclinical diabetes as a risk factor for autoimmunity in children with a genetic predisposition to T1D. PMID:24561305

  6. Monotop signature from a fermionic top partner

    NASA Astrophysics Data System (ADS)

    Gonçalves, Dorival; Kong, Kyoungchul; Sakurai, Kazuki; Takeuchi, Michihisa

    2018-01-01

    We investigate monotop signatures arising from phenomenological models of fermionic top partners, which are degenerate in mass and decay into a bosonic dark matter candidate, either spin 0 or spin 1. Such a model provides a monotop signature as a smoking gun, while conventional searches with t t ¯ + missing transverse momentum are limited. Two such scenarios, (i) a phenomenological third generation extradimensional model with excited top and electroweak sectors, and (ii) a model where only a top partner and a dark matter particle are added to the standard model, are studied in the degenerate mass regime. We find that in the case of extra dimension a number of different processes give rise to effectively the same monotop final state, and a great gain can be obtained in the sensitivity for this channel. We show that the monotop search can explore top-partner masses up to 630 and 300 GeV for the third generation extradimensional model and the minimal fermionic top-partner model, respectively, at the high luminosity LHC.

  7. The thermodynamic properties of 2-ethylhexyl acrylate over the temperature range from T → 0 to 350 K

    NASA Astrophysics Data System (ADS)

    Kulagina, T. G.; Samosudova, Ya. S.; Letyanina, I. A.; Sevast'yanov, E. V.; Smirnova, N. N.; Smirnova, L. A.; Mochalova, A. E.

    2012-05-01

    The temperature dependence of the heat capacity C {/p o}= f( T) 2 of 2-ethylhexyl acrylate was studied in an adiabatic vacuum calorimeter over the temperature range 6-350 K. Measurement errors were mainly of 0.2%. Glass formation and vitreous state parameters were determined. An isothermic shell calorimeter with a static bomb was used to measure the energy of combustion of 2-ethylhexyl acrylate. The experimental data were used to calculate the standard thermodynamic functions C {/p o}( T), H o( T)- H o(0), S o( T)- S o(0), and G o( T)- H o(0) of the compound in the vitreous and liquid states over the temperature range from T → 0 to 350 K, the standard enthalpies of combustion Δc H o, and the thermodynamic characteristics of formation Δf H o, Δf S o, and Δf G o at 298.15 K and p = 0.1 MPa.

  8. Study of Anti-Neutrino Beam with Muon Monitor in the T2K experiment

    NASA Astrophysics Data System (ADS)

    Hiraki, Takahiro

    The T2K experiment is a long-baseline neutrino oscillation experiment. In 2013, the T2K collaboration observed electron neutrino appearance in a muon neutrino beam at 7.3 sigma significance. One of the next main goals of the T2K experiment is to measure electron anti-neutrino appearance. In June 2014 we took anti-neutrino beam data for the first time. The anti-neutrino beam was obtained by reversing the polarity of horn focusing magnets. To monitor the direction and intensity of the neutrino beam which is produced from the decay of pions and kaons, the muon beam is continuously measured by Muon Monitor (MUMON). To reconstruct the profile of the muon beam, MUMON is equipped with 49 sensors distributed on a plane behind the beam dump. In this report, we show some results of the anti-neutrino beam data taken by monitors including MUMON. In particular, dependence of the muon beam intensity on electric current of the horns, correlation between the proton beam position and the MUMON profile, and beam stability are presented. Comparison between the data and Monte Carlo simulation is also discussed.

  9. Signature of Strange Dibaryon in Kaon-Induced Reaction

    NASA Astrophysics Data System (ADS)

    Ohnishi, Shota; Ikeda, Yoichi; Kamano, Hiroyuki; Sato, Toru

    2013-03-01

    We examine how the signature of the strange-dibaryon resonances in the {bar{K}NN} - πΣ N system shows up in the scattering amplitude on the physical real energy axis within the framework of Alt-Grassberger-Sandhas equations. The so-called point method is applied to handle the three-body unitarity cut in the amplitudes. We also discuss the possibility that the strange-dibaryon production reactions can be used for discriminating between existing models of the two-body {bar{K}N} - πΣ system with Λ(1405).

  10. Mechanistic considerations on the wavelength-dependent variations of UVR genotoxicity and mutagenesis in skin: the discrimination of UVA-signature from UV-signature mutation.

    PubMed

    Ikehata, Hironobu

    2018-05-31

    Ultraviolet radiation (UVR) predominantly induces UV-signature mutations, C → T and CC → TT base substitutions at dipyrimidine sites, in the cellular and skin genome. I observed in our in vivo mutation studies of mouse skin that these UVR-specific mutations show a wavelength-dependent variation in their sequence-context preference. The C → T mutation occurs most frequently in the 5'-TCG-3' sequence regardless of the UVR wavelength, but is recovered more preferentially there as the wavelength increases, resulting in prominent occurrences exclusively in the TCG sequence in the UVA wavelength range, which I will designate as a "UVA signature" in this review. The preference of the UVB-induced C → T mutation for the sequence contexts shows a mixed pattern of UVC- and UVA-induced mutations, and a similar pattern is also observed for natural sunlight, in which UVB is the most genotoxic component. In addition, the CC → TT mutation hardly occurs at UVA1 wavelengths, although it is detected rarely but constantly in the UVC and UVB ranges. This wavelength-dependent variation in the sequence-context preference of the UVR-specific mutations could be explained by two different photochemical mechanisms of cyclobutane pyrimidine dimer (CPD) formation. The UV-signature mutations observed in the UVC and UVB ranges are known to be caused mainly by CPDs produced through the conventional singlet/triplet excitation of pyrimidine bases after the direct absorption of the UVC/UVB photon energy in those bases. On the other hand, a novel photochemical mechanism through the direct absorption of the UVR energy to double-stranded DNA, which is called "collective excitation", has been proposed for the UVA-induced CPD formation. The UVA photons directly absorbed by DNA produce CPDs with a sequence context preference different from that observed for CPDs caused by the UVC/UVB-mediated singlet/triplet excitation, causing CPD formation preferentially at thymine-containing dipyrimidine

  11. Signatures of Diversifying Selection in European Pig Breeds

    PubMed Central

    Wilkinson, Samantha; Lu, Zen H.; Megens, Hendrik-Jan; Archibald, Alan L.; Haley, Chris; Jackson, Ian J.; Groenen, Martien A. M.; Crooijmans, Richard P. M. A.; Ogden, Rob; Wiener, Pamela

    2013-01-01

    Following domestication, livestock breeds have experienced intense selection pressures for the development of desirable traits. This has resulted in a large diversity of breeds that display variation in many phenotypic traits, such as coat colour, muscle composition, early maturity, growth rate, body size, reproduction, and behaviour. To better understand the relationship between genomic composition and phenotypic diversity arising from breed development, the genomes of 13 traditional and commercial European pig breeds were scanned for signatures of diversifying selection using the Porcine60K SNP chip, applying a between-population (differentiation) approach. Signatures of diversifying selection between breeds were found in genomic regions associated with traits related to breed standard criteria, such as coat colour and ear morphology. Amino acid differences in the EDNRB gene appear to be associated with one of these signatures, and variation in the KITLG gene may be associated with another. Other selection signals were found in genomic regions including QTLs and genes associated with production traits such as reproduction, growth, and fat deposition. Some selection signatures were associated with regions showing evidence of introgression from Asian breeds. When the European breeds were compared with wild boar, genomic regions with high levels of differentiation harboured genes related to bone formation, growth, and fat deposition. PMID:23637623

  12. Supervised Multi-Authority Scheme with Blind Signature for IoT with Attribute Based Encryption

    NASA Astrophysics Data System (ADS)

    Nissenbaum, O. V.; Ponomarov, K. Y.; Zaharov, A. A.

    2018-04-01

    This article proposes a three-side cryptographic scheme for verifying device attributes with a Supervisor and a Certification Authority (CA) for attribute-based encryption. Two options are suggested: using a message authentication code and using a digital signature. The first version is suitable for networks with one CA, and the second one for networks with several CAs, including dynamic systems. Also, the addition of this scheme with a blind signature is proposed to preserve the confidentiality of the device attributes from the CA. The introduction gives a definition and a brief historical overview of attribute-based encryption (ABE), addresses the use of ABE in the Internet of Things.

  13. Modeling and Docking Studies on Novel Mutants (K71L and T204V) of the ATPase Domain of Human Heat Shock 70 kDa Protein 1

    PubMed Central

    Elengoe, Asita; Naser, Mohammed Abu; Hamdan, Salehhuddin

    2014-01-01

    The purpose of exploring protein interactions between human adenovirus and heat shock protein 70 is to exploit a potentially synergistic interaction to enhance anti-tumoral efficacy and decrease toxicity in cancer treatment. However, the protein interaction of Hsp70 with E1A32 kDa of human adenovirus serotype 5 remains to be elucidated. In this study, two residues of ATPase domain of human heat shock 70 kDa protein 1 (PDB: 1 HJO) were mutated. 3D mutant models (K71L and T204V) using PyMol software were then constructed. The structures were evaluated by PROCHECK, ProQ, ERRAT, Verify 3D and ProSA modules. All evidence suggests that all protein models are acceptable and of good quality. The E1A32 kDa motif was retrieved from UniProt (P03255), as well as subjected to docking interaction with NBD, K71L and T204V, using the Autodock 4.2 program. The best lowest binding energy value of −9.09 kcal/mol was selected for novel T204V. Moreover, the protein-ligand complex structures were validated by RMSD, RMSF, hydrogen bonds and salt bridge analysis. This revealed that the T204V-E1A32 kDa motif complex was the most stable among all three complex structures. This study provides information about the interaction between Hsp70 and the E1A32 kDa motif, which emphasizes future perspectives to design rational drugs and vaccines in cancer therapy. PMID:24758925

  14. Dynamic Variation and Reversion in the Signature Amino Acids of H7N9 Virus During Human Infection.

    PubMed

    Zou, Xiaohui; Guo, Qiang; Zhang, Wei; Chen, Hui; Bai, Wei; Lu, Binghuai; Zhang, Wang; Fan, Yanyan; Liu, Chao; Wang, Yeming; Zhou, Fei; Cao, Bin

    2018-04-24

    Signature amino acids of H7N9 influenza virus play critical roles in human adaption and pathogenesis, but their dynamic variation is unknown during disease development. We sequentially collected respiratory samples from H7N9 patients at different timepoints and applied next-generation sequencing (NGS) to the whole genome of the H7N9 virus to investigate the variation at signature sites. A total of 11 patients were involved and from whom 29 samples were successfully sequenced, including samples from multiple timepoints in 9 patients. NA R292K, PB2 E627K, and D701N were the three most dynamic mutations. The oseltamivir resistance-related NA R292K mutation was present in 9 samples from 5 patients, including one sample obtained before antiviral therapy. In all patients with the NA 292K mutation, the oseltamivir-sensitive 292R genotype persisted and was not eliminated by antiviral treatment. The PB2 E627K substitution was present in 18 samples from 8 patients, among which 12 samples demonstrated a mixture of E/K and the 627K frequency exhibited dynamic variation. Dual D701N and E627K mutations emerged but failed to achieve predominance in any of the samples. Signature amino acids in PB2 and NA demonstrated high polymorphism and dynamic variation within individual patients during H7N9 virus infection.

  15. Modeling neutrino-induced charged pion production on water at T2K kinematics

    NASA Astrophysics Data System (ADS)

    Nikolakopoulos, A.; González-Jiménez, R.; Niewczas, K.; Sobczyk, J.; Jachowicz, N.

    2018-05-01

    Pion production is a significant component of the signal in accelerator-based neutrino experiments. Over the last years, the MiniBooNE, T2K, and MINERvA collaborations have reported a substantial amount of data on (anti)neutrino-induced pion production on the nucleus. However, a comprehensive and consistent description of the whole data set is still missing. We aim at improving the current understanding of neutrino-induced pion production on the nucleus. To this end, the comparison of experimental data with theoretical predictions, preferably based on microscopic models, is essential to disentangle the different reaction mechanisms involved in the process. To describe single-pion production, we use a hybrid model that combines low- and a high-energy approaches. The low-energy model contains resonances and background terms. At high invariant masses, a high-energy model based on a Regge approach is employed. The model is implemented in the nucleus using the relativistic plane wave impulse approximation (RPWIA). We present a comparison of the hybrid-RPWIA and low-energy model with the recent neutrino-induced charged-current 1 π+ -production cross section on water reported by T2K. In order to judge the impact of final-state interactions (FSI), we confront our results with those of the nuwro Monte Carlo generator. The hybrid-RPWIA model and nuwro results compare favorably to the data, albeit that FSI are not included in the former. The need of a high-energy model at T2K kinematics is made clear. These results complement our previous work [Phys. Rev. D 97, 013004 (2018), 10.1103/PhysRevD.97.013004], in which we compared the models to the MINERvA and MiniBooNE 1 π+ data. The hybrid-RPWIA model tends to overpredict both the T2K and MINERvA data in kinematic regions where the largest suppression due to FSI is expected and agrees remarkably well with the data in other kinematic regions. On the contrary, the MiniBooNE data are underpredicted over the whole kinematic range.

  16. T1-weighted brain imaging with a 32-channel coil at 3T using TurboFLASH BLADE compared with standard cartesian k-space sampling.

    PubMed

    Attenberger, Ulrike I; Runge, Val M; Williams, Kenneth D; Stemmer, Alto; Michaely, Henrik J; Schoenberg, Stefan O; Reiser, Maximilian F; Wintersperger, Bernd J

    2009-03-01

    Motion artifacts often markedly degrade image quality in clinical scans. The BLADE technique offers an alternative k-space sampling scheme reducing the effect of patient related motion on image quality. The purpose of this study is the comparison of imaging artifacts, signal-to-noise (SNR), and contrast-to-noise ratio (CNR) of a new turboFLASH BLADE k-space trajectory with the standard Cartesian k-space sampling for brain imaging, using a 32-channel coil at 3T. The results from 32 patients included after informed consent are reported. This study was performed with a 32-channel head coil on a 3T scanner. Sagittal and axial T1-weighted FLASH sequences (TR/TE 250/2.46 milliseconds, flip angle 70-degree), acquired with Cartesian k-space sampling and T1-weighted turboFLASH sequences (TR/TE/TIsag/TIax 3200/2.77/1144/1056 milliseconds, flip angle 20-degree), using PROPELLER (BLADE) k-space trajectory, were compared. SNR and CNR were evaluated using a paired student t test. The frequency of motion artifacts was assessed in a blinded read. To analyze the differences between both techniques a McNemar test was performed. A P value <0.05 was considered statistically significant. From the blinded read, the overall preference in terms of diagnostic image quality was statistically significant in favor of the BLADE turboFLASH data sets, compared with standard FLASH for both sagittal (P < 0.0001) and axial (P < 0.0001) planes. The frequency of motion artifacts from the scalp was higher for standard FLASH sequences than for BLADE sequences on both axial (47%, P < 0.0003) and sagittal (69%, P < 0.0001) planes. BLADE was preferred in 100% (sagittal plane) and 80% (axial plane) of in-patient data sets and in 68% (sagittal plane) and 73% (axial plane) of out-patient data sets.The BLADE T1 scan did have lower SNRmean (BLADEax 179 +/- 98, Cartesianax 475 +/- 145, BLADEsag 171 +/- 51, and Cartesiansag 697 +/- 129) with P values indicating accordingly a statistically significant difference

  17. ADAGE signature analysis: differential expression analysis with data-defined gene sets.

    PubMed

    Tan, Jie; Huyck, Matthew; Hu, Dongbo; Zelaya, René A; Hogan, Deborah A; Greene, Casey S

    2017-11-22

    Gene set enrichment analysis and overrepresentation analyses are commonly used methods to determine the biological processes affected by a differential expression experiment. This approach requires biologically relevant gene sets, which are currently curated manually, limiting their availability and accuracy in many organisms without extensively curated resources. New feature learning approaches can now be paired with existing data collections to directly extract functional gene sets from big data. Here we introduce a method to identify perturbed processes. In contrast with methods that use curated gene sets, this approach uses signatures extracted from public expression data. We first extract expression signatures from public data using ADAGE, a neural network-based feature extraction approach. We next identify signatures that are differentially active under a given treatment. Our results demonstrate that these signatures represent biological processes that are perturbed by the experiment. Because these signatures are directly learned from data without supervision, they can identify uncurated or novel biological processes. We implemented ADAGE signature analysis for the bacterial pathogen Pseudomonas aeruginosa. For the convenience of different user groups, we implemented both an R package (ADAGEpath) and a web server ( http://adage.greenelab.com ) to run these analyses. Both are open-source to allow easy expansion to other organisms or signature generation methods. We applied ADAGE signature analysis to an example dataset in which wild-type and ∆anr mutant cells were grown as biofilms on the Cystic Fibrosis genotype bronchial epithelial cells. We mapped active signatures in the dataset to KEGG pathways and compared with pathways identified using GSEA. The two approaches generally return consistent results; however, ADAGE signature analysis also identified a signature that revealed the molecularly supported link between the MexT regulon and Anr. We designed

  18. Expression of K2P5.1 potassium channels on CD4+ T lymphocytes correlates with disease activity in rheumatoid arthritis patients.

    PubMed

    Bittner, Stefan; Bobak, Nicole; Feuchtenberger, Martin; Herrmann, Alexander M; Göbel, Kerstin; Kinne, Raimund W; Hansen, Anker J; Budde, Thomas; Kleinschnitz, Christoph; Frey, Oliver; Tony, Hans-Peter; Wiendl, Heinz; Meuth, Sven G

    2011-02-11

    CD4+ T cells express K(2P)5.1 (TWIK-related acid-sensitive potassium channel 2 (TASK2); KCNK5), a member of the two-pore domain potassium channel family, which has been shown to influence T cell effector functions. Recently, it was shown that K(2P)5.1 is upregulated upon (autoimmune) T cell stimulation. The aim of this study was to correlate expression levels of K(2P)5.1 on T cells from patients with rheumatoid arthritis (RA) to disease activity in these patients. Expression levels of K(2P)5.1 were measured by RT-PCR in the peripheral blood of 58 patients with RA and correlated with disease activity parameters (C-reactive protein levels, erythrocyte sedimentation rates, disease activity score (DAS28) scores). Twenty patients undergoing therapy change were followed-up for six months. Additionally, synovial fluid and synovial biopsies were investigated for T lymphocytes expressing K(2P)5.1. K(2P)5.1 expression levels in CD4+ T cells show a strong correlation to DAS28 scores in RA patients. Similar correlations were found for serological inflammatory parameters (erythrocyte sedimentation rate, C-reactive protein). In addition, K(2P)5.1 expression levels of synovial fluid-derived T cells are higher compared to peripheral blood T cells. Prospective data in individual patients show a parallel behaviour of K(2P)5.1 expression to disease activity parameters during a longitudinal follow-up for six months. Disease activity in RA patients correlates strongly with K(2P)5.1 expression levels in CD4+ T lymphocytes in the peripheral blood in cross-sectional as well as in longitudinal observations. Further studies are needed to investigate the exact pathophysiological mechanisms and to evaluate the possible use of K(2P)5.1 as a potential biomarker for disease activity and differential diagnosis.

  19. A High-Dimensional Atlas of Human T Cell Diversity Reveals Tissue-Specific Trafficking and Cytokine Signatures.

    PubMed

    Wong, Michael Thomas; Ong, David Eng Hui; Lim, Frances Sheau Huei; Teng, Karen Wei Weng; McGovern, Naomi; Narayanan, Sriram; Ho, Wen Qi; Cerny, Daniela; Tan, Henry Kun Kiaang; Anicete, Rosslyn; Tan, Bien Keem; Lim, Tony Kiat Hon; Chan, Chung Yip; Cheow, Peng Chung; Lee, Ser Yee; Takano, Angela; Tan, Eng-Huat; Tam, John Kit Chung; Tan, Ern Yu; Chan, Jerry Kok Yen; Fink, Katja; Bertoletti, Antonio; Ginhoux, Florent; Curotto de Lafaille, Maria Alicia; Newell, Evan William

    2016-08-16

    Depending on the tissue microenvironment, T cells can differentiate into highly diverse subsets expressing unique trafficking receptors and cytokines. Studies of human lymphocytes have primarily focused on a limited number of parameters in blood, representing an incomplete view of the human immune system. Here, we have utilized mass cytometry to simultaneously analyze T cell trafficking and functional markers across eight different human tissues, including blood, lymphoid, and non-lymphoid tissues. These data have revealed that combinatorial expression of trafficking receptors and cytokines better defines tissue specificity. Notably, we identified numerous T helper cell subsets with overlapping cytokine expression, but only specific cytokine combinations are secreted regardless of tissue type. This indicates that T cell lineages defined in mouse models cannot be clearly distinguished in humans. Overall, our data uncover a plethora of tissue immune signatures and provide a systemic map of how T cell phenotypes are altered throughout the human body. Copyright © 2016 Elsevier Inc. All rights reserved.

  20. Diffuse-interface polycrystal plasticity: expressing grain boundaries as geometrically necessary dislocations

    NASA Astrophysics Data System (ADS)

    Admal, Nikhil Chandra; Po, Giacomo; Marian, Jaime

    2017-12-01

    The standard way of modeling plasticity in polycrystals is by using the crystal plasticity model for single crystals in each grain, and imposing suitable traction and slip boundary conditions across grain boundaries. In this fashion, the system is modeled as a collection of boundary-value problems with matching boundary conditions. In this paper, we develop a diffuse-interface crystal plasticity model for polycrystalline materials that results in a single boundary-value problem with a single crystal as the reference configuration. Using a multiplicative decomposition of the deformation gradient into lattice and plastic parts, i.e. F( X,t)= F L( X,t) F P( X,t), an initial stress-free polycrystal is constructed by imposing F L to be a piecewise constant rotation field R 0( X), and F P= R 0( X)T, thereby having F( X,0)= I, and zero elastic strain. This model serves as a precursor to higher order crystal plasticity models with grain boundary energy and evolution.

  1. Heat capacity and thermodynamic properties for coesite and jadeite, reexamination of the quartz-coesite equilibrium boundary

    USGS Publications Warehouse

    Hemingway, B.S.; Bohlen, S.R.; Hankins, W.B.; Westrum, E.F.; Kuskov, O.L.

    1998-01-01

    The heat capacities of synthetic coesite and jadeite were measured between about 15 and 850 K by adiabatic and differential scanning calorimetry. The experimental data were smoothed and estimates were made of heat capacities to 1800 K. The following equations represent our estimate of the heat capacities of coesite and jadeite between 298.15 and 1800 K: [see original article for formula]. Tables of thermodynamic values for coesite and jadeite to 1800 K are presented. The entropies of coesite and jadeite are 40.38 ?? 0.12 and 136.5 ?? 0.32 J/(mol.K), respectively, at 298.15 K. The entropy for coesite derived here confirms the value published earlier by Holm et al. (1967). We have derived an equation to describe the quartz-coesite boundary over the temperature range of 600 to 1500 K, P(GPa) = 1.76 + 0.001T(K). Our results are in agreement with the enthalpy of transition reported by Akaogi and Navrotsky (1984) and yield -907.6 ?? 1.4 kJ/mol for the enthalpy of formation of coesite from the elements at 298.15 K and 1 bar, in agreement with the value recommended by CODATA (Khodakovsky et al. 1995). Several sources of uncertainty remain unacceptably high, including: the heat capacities of coesite at temperatures above about 1000 K; the heat capacities and volumetric properties of ?? quartz at higher pressures and at temperatures above 844 K; the pressure corrections for the piston cylinder apparatus used to determine the quartz-coesite equilibrium boundary.

  2. Signatures of Hot Molecular Hydrogen Absorption from Protoplanetary Disks. I. Non-thermal Populations

    NASA Astrophysics Data System (ADS)

    Hoadley, Keri; France, Kevin; Arulanantham, Nicole; Loyd, R. O. Parke; Kruczek, Nicholas

    2017-09-01

    The environment around protoplanetary disks (PPDs) regulates processes that drive the chemical and structural evolution of circumstellar material. We perform a detailed empirical survey of warm molecular hydrogen (H2) absorption observed against H I-Lyα (Lyα: λ1215.67) emission profiles for 22 PPDs, using archival Hubble Space Telescope ultraviolet (UV) spectra to identify H2 absorption signatures and quantify the column densities of H2 ground states in each sightline. We compare thermal equilibrium models of H2 to the observed H2 rovibrational level distributions. We find that, for the majority of targets, there is a clear deviation in high-energy states (T exc ≳ 20,000 K) away from thermal equilibrium populations (T(H2) ≳ 3500 K). We create a metric to estimate the total column density of non-thermal H2 (N(H2)nLTE) and find that the total column densities of thermal (N(H2)) and N(H2)nLTE correlate for transition disks and targets with detectable C IV-pumped H2 fluorescence. We compare N(H2) and N(H2)nLTE to circumstellar observables and find that N(H2)nLTE correlates with X-ray and far-UV luminosities, but no correlations are observed with the luminosities of discrete emission features (e.g., Lyα, C IV). Additionally, N(H2) and N(H2)nLTE are too low to account for the H2 fluorescence observed in PPDs, so we speculate that this H2 may instead be associated with a diffuse, hot, atomic halo surrounding the planet-forming disk. We create a simple photon-pumping model for each target to test this hypothesis and find that Lyα efficiently pumps H2 levels with T exc ≥ 10,000 K out of thermal equilibrium.

  3. Vortex rings impinging on permeable boundaries

    NASA Astrophysics Data System (ADS)

    Mujal-Colilles, Anna; Dalziel, Stuart B.; Bateman, Allen

    2015-01-01

    Experiments with vortex rings impinging permeable and solid boundaries are presented in order to investigate the influence of permeability. Utilizing Particle Image Velocimetry, we compared the behaviour of a vortex ring impinging four different reticulated foams (with permeability k ˜ 26 - 85 × 10-8 m2) and a solid boundary. Results show how permeability affects the stretching phenomena of the vortex ring and the formation and evolution of the secondary vortex ring with opposite sign. Moreover, permeability also affects the macroscopic no-slip boundary condition found on the solid boundary, turning it into an apparent slip boundary condition for the most permeable boundary. The apparent slip-boundary condition and the flux exchange between the ambient fluid and the foam are jointly responsible for both the modified formation of the secondary vortex and changes on the vortex ring diameter increase.

  4. Ruthenium/Iridium Ratios in the Cretaceous-tertiary Boundary Clay: Implications for Global Dispersal and Fractionation Within the Ejecta Cloud

    NASA Technical Reports Server (NTRS)

    Evans, Noreen Joyce; Goodfellow, W. D.; Gregoire, D. C.; Veizer, J.

    1992-01-01

    Ruthenium (Ru) and iridium (Ir) are the least mobile platinum group elements (PGE's) within the Cretaceous-Tertiary (K-T) boundary clay (BC). The Ru/Ir ratio is, therefore, the most useful PGE interelement ratio for distinguishing terrestrial and extraterrestrial contributions to the BC. The Ru/Ir ratio of marine K-T sections (1.77 +/- 0.53) is statistically different from that of the continental sections (0.93 +/- 0.28). The marine Ru/Ir ratios are chondritic (C1 = 1.48 +/- 0.09), but the continental ratios are not. We discovered an inverse correlation of shocked quartz size (or distance from the impact site) and Ru/Ir ratio. This correlation may arise from the difference in Ru and Ir vaporization temperature and/or fractionation during condensation from the ejecta cloud. Postsedimentary alteration, remobilization, or terrestrial PGE input may be responsible for the Ru/Ir ratio variations within the groups of marine and continental sites studied. The marine ratios could also be attained if approximately 15 percent of the boundary metals were contributed by Deccan Trap emissions. However, volcanic emissions could not have been the principal source of the PGE's in the BC because mantle PGE ratios and abundances are inconsistent with those measured in the clay. The Ru/Ir values for pristine Tertiary mantle xenoliths (2.6 +/- 0.48), picrites (4.1 +/- 1.8), and Deccan Trap basalt (3.42 +/- 1.96) are all statistically distinct from those measured in the K-T BC.

  5. Gas phase kinetics of the OH + CH3CH2OH reaction at temperatures of the interstellar medium (T = 21-107 K).

    PubMed

    Ocaña, A J; Blázquez, S; Ballesteros, B; Canosa, A; Antiñolo, M; Albaladejo, J; Jiménez, E

    2018-02-21

    Ethanol, CH 3 CH 2 OH, has been unveiled in the interstellar medium (ISM) by radioastronomy and it is thought to be released into the gas phase after the warm-up phase of the grain surface, where it is formed. Once in the gas phase, it can be destroyed by different reactions with atomic and radical species, such as hydroxyl (OH) radicals. The knowledge of the rate coefficients of all these processes at temperatures of the ISM is essential in the accurate interpretation of the observed abundances. In this work, we have determined the rate coefficient for the reaction of OH with CH 3 CH 2 OH (k(T)) between 21 and 107 K by employing the pulsed and continuous CRESU (Cinétique de Réaction en Ecoulement Supersonique Uniforme, which means Reaction Kinetics in a Uniform Supersonic Flow) technique. The pulsed laser photolysis technique was used for generating OH radicals, whose time evolution was monitored by laser induced fluorescence. An increase of approximately 4 times was observed for k(21 K) with respect to k(107 K). With respect to k(300 K), the OH-reactivity at 21 K is enhanced by two orders of magnitude. The obtained T-expression in the investigated temperature range is k(T) = (2.1 ± 0.5) × 10 -11 (T/300 K) -(0.71±0.10) cm 3 molecule -1 s -1 . In addition, the pressure dependence of k(T) has been investigated at several temperatures between 21 K and 90 K. No pressure dependence of k(T) was observed in the investigated ranges. This may imply that this reaction is purely bimolecular or that the high-pressure limit is reached at the lowest total pressure experimentally accessible in our system. From our results, k(T) at usual IS temperatures (∼10-100 K) is confirmed to be very fast. Typical rate coefficients can be considered to range within about 4 × 10 -11 cm 3 molecule -1 s -1 at 100 K and around 1 × 10 -10 cm 3 molecule -1 s -1 at 20 K. The extrapolation of k at the lowest temperatures of the dense molecular clouds of ISM is also discussed in this paper.

  6. The terrain signatures of administrative units: a tool for environmental assessment.

    PubMed

    Miliaresis, George Ch

    2009-03-01

    The quantification of knowledge related to the terrain and the landuse/landcover of administrative units in Southern Greece (Peloponnesus) is performed from the CGIAR-CSI SRTM digital elevation model and the CORINE landuse/landcover database. Each administrative unit is parametrically represented by a set of attributes related to its relief. Administrative units are classified on the basis of K-means cluster analysis in an attempt to see how they are organized into groups and cluster derived geometric signatures are defined. Finally each cluster is parametrically represented on the basis of the occurrence of the Corine landuse/landcover classes included and thus, landcover signatures are derived. The geometric and the landuse/landcover signatures revealed a terrain dependent landuse/landcover organization that was used in the assessment of the forest fires impact at moderate resolution scale.

  7. Progress in Primary Acoustic Thermometry at NIST: 273 K to 505 K

    NASA Astrophysics Data System (ADS)

    Strouse, G. F.; Defibaugh, D. R.; Moldover, M. R.; Ripple, D. C.

    2003-09-01

    The NIST Acoustic Thermometer determines the thermodynamic temperature by measuring the speed of sound of argon in a spherical cavity. We obtained the thermodynamic temperature of three fixed points on the International Temperature Scale of 1990: the melting point of gallium [T(Ga) = 302.9146 K] and the freezing points of indium [T(In) = 429.7485 K] and tin [T(Sn) = 505.078 K]. The deviations of thermodynamic temperature from the ITS-90 defined temperatures are T - T90 = (4.7 ± 0.6) mK at T(Ga) , T - T90 = (8.8 ± 1.5) mK at T(In) , and T - T90 = (10.7 ± 3.0) mK at T(Sn) , where the uncertainties are for a coverage factor of k = 1. Our results at T(In) and T(Sn) reduce the uncertainty of T - T90 by a factor of two in this range. Both T - T90 at T(Ga) and the measured thermal expansion of the resonator between the triple point of water and T(Ga) are in excellent agreement with the 1992 determination at NIST. The dominant uncertainties in the present data come from frequency-dependent and time-dependent crosstalk between the electroacoustic transducers. We plan to reduce these uncertainties and extend this work to 800 K.

  8. Kinematic signature of India/Australia plates break-up

    NASA Astrophysics Data System (ADS)

    Iaffaldano, G.; Bunge, H.

    2008-12-01

    The paradigm of Plate Tectonics states that the uppermost layer of the Earth is made of a number of quasi- rigid blocks moving at different rates in different directions, while most of the deformation is focused along their boundaries. Perhaps one of the most interesting and intriguing processes in Plate Tectonics is the generation of new plate boundaries. The principle of inertia implies that any such event would invariably trigger changes in plate motions, because the budget of mantle basal-drag and plate-boundary forces would be repartitioned. A recent episode is thought to have occurred in the Indian Ocean, where a variety of evidences - including localized seismicity along the Nienty East Ridge, compression-generated unconformities of ocean-floor sediments, and identified paleomagnetic isochrones - suggest the genesis of a boundary separating the India and Australia plates. Here we use global numerical models of the coupled mantle/lithosphere system to show for the first time that an event of separation between India and Australia, having occurred sometime between 11 and 8 Myrs ago, has left a distinct signature in the observed record of plate motions. Specifically, while motions of India and Australia relative to fixed Eurasia are almost indistinguishable prior to 11 Myrs ago, their convergence to Eurasia since then differs significantly, by as much as 2 cm/yr. Finally, we speculate about possible causes for the separation between India and Australia plates.

  9. Kinematic signature of India/Australia plates break-up

    NASA Astrophysics Data System (ADS)

    Iaffaldano, G.; Bunge, H.-P.

    2009-04-01

    The paradigm of Plate Tectonics states that the uppermost layer of the Earth is made of a number of quasi-rigid blocks moving at different rates in different directions, while most of the deformation is focused along their boundaries. Perhaps one of the most interesting and intriguing processes in Plate Tectonics is the generation of new plate boundaries. The principle of inertia implies that any such event would invariably trigger changes in plate motions, because the budget of mantle basal-drag and plate-boundary forces would be repartitioned. A recent episode is thought to have occurred in the Indian Ocean, where a variety of evidences - including localized seismicity along the Nienty East Ridge, compression-generated unconformities of ocean-floor sediments, and identified paleomagnetic isochrones - suggest the genesis of a boundary separating the India and Australia plates. Here we use global numerical models of the coupled mantle/lithosphere system to show for the first time that an event of separation between India and Australia, having occurred sometime between 11 and 8 Myrs ago, has left a distinct signature in the observed record of plate motions. Specifically, while motions of India and Australia relative to fixed Eurasia are almost indistinguishable prior to 11 Myrs ago, their convergence to Eurasia since then differs significantly, by as much as 2 cm/yr. Finally, we speculate about possible causes for the separation between India and Australia plates.

  10. Estimating Thermal Inertia with a Maximum Entropy Boundary Condition

    NASA Astrophysics Data System (ADS)

    Nearing, G.; Moran, M. S.; Scott, R.; Ponce-Campos, G.

    2012-04-01

    Thermal inertia, P [Jm-2s-1/2K-1], is a physical property the land surface which determines resistance to temperature change under seasonal or diurnal heating. It is a function of volumetric heat capacity, c [Jm-3K-1], and thermal conductivity, k [Wm-1K-1] of the soil near the surface: P=√ck. Thermal inertia of soil varies with moisture content due the difference between thermal properties of water and air, and a number of studies have demonstrated that it is feasible to estimate soil moisture given thermal inertia (e.g. Lu et al, 2009, Murray and Verhoef, 2007). We take the common approach to estimating thermal inertia using measurements of surface temperature by modeling the Earth's surface as a 1-dimensional homogeneous diffusive half-space. In this case, surface temperature is a function of the ground heat flux (G) boundary condition and thermal inertia and a daily value of P was estimated by matching measured and modeled diurnal surface temperature fluctuations. The difficulty is in measuring G; we demonstrate that the new maximum entropy production (MEP) method for partitioning net radiation into surface energy fluxes (Wang and Bras, 2011) provides a suitable boundary condition for estimating P. Adding the diffusion representation of heat transfer in the soil reduces the number of free parameters in the MEP model from two to one, and we provided a sensitivity analysis which suggests that, for the purpose of estimating P, it is preferable to parameterize the coupled MEP-diffusion model by the ratio of thermal inertia of the soil to the effective thermal inertia of convective heat transfer to the atmosphere. We used this technique to estimate thermal inertia at two semiarid, non-vegetated locations in the Walnut Gulch Experimental Watershed in southeast AZ, USA and compared these estimates to estimates of P made using the Xue and Cracknell (1995) solution for a linearized ground heat flux boundary condition, and we found that the MEP-diffusion model produced

  11. Thermodynamic limit and boundary energy of the su(3) spin chain with non-diagonal boundary fields

    NASA Astrophysics Data System (ADS)

    Wen, Fakai; Yang, Tao; Yang, Zhanying; Cao, Junpeng; Hao, Kun; Yang, Wen-Li

    2017-02-01

    We investigate the thermodynamic limit of the su (n)-invariant spin chain models with unparallel boundary fields. It is found that the contribution of the inhomogeneous term in the associated T-Q relation to the ground state energy does vanish in the thermodynamic limit. This fact allows us to calculate the boundary energy of the system. Taking the su (2) (or the XXX) spin chain and the su (3) spin chain as concrete examples, we have studied the corresponding boundary energies of the models. The method used in this paper can be generalized to study the thermodynamic properties and boundary energy of other high rank models with non-diagonal boundary fields.

  12. Testing Astronomical and 40Ar/39Ar Timescales for the K/Pg Boundary Interval Using High-Resolution Magnetostratigraphy and U-Pb Geochronology in the Denver Basin of Colorado

    NASA Astrophysics Data System (ADS)

    Clyde, W.; Bowring, S. A.; Johnson, K. R.; Ramezani, J.; Jones, M. M.

    2015-12-01

    Accurate and precise calibration of the Geomagnetic Polarity Timescale (GPTS) in absolute time is critical for resolving rates of geological and biological processes which in turn help constrain the underlying causes of those processes. Numerical calibration of the GPTS was traditionally carried out by interpolation between a limited number of 40Ar/39Ar dated volcanic ash deposits from superpositional sequences with well-defined magnetostratigraphies. More recently, the Neogene part of the GPTS has been calibrated using high-resolution astrochronological methods, however the application of these approaches to pre-Neogene parts of the timescale is controversial given the uncertainties in relevant orbital parameters this far back in time and differing interpretations of local cyclostratigraphic records. The Cretaceous-Paleogene (K/Pg) boundary interval is a good example, where various astronomical and 40Ar/39Ar calibrations have been proposed with varying degrees of agreement. The Denver Basin (Colorado, USA) contains one of the most complete stratigraphic sequences across the K/Pg boundary in the world, preserving evidence of bolide impact as well as biotic extinction and recovery in a thick stratigraphic package that is accessible by both core and outcrop. We present a series of high-precision U-Pb age determinations from interbedded volcanic ash deposits within a tightly constrained magnetobiostratigraphic framework across the K/Pg boundary in the Denver Basin. This new timeline provides a precise absolute age for the K/Pg boundary, constrains the ages of magnetic polarity Chrons C28 to C30, and provides a direct and independent test of early Paleogene astronomical and 40Ar/39Ar based timescales. Temporal calibration of fossil pollen evidence of the "fern spike" in the Denver Basin shows that plant extinctions peaked within ~50-500 years of the bolide impact and primary productivity recovered ~500-5000 years after the impact.

  13. The CHESS Survey of the L1157-B1 Shock Region: CO Spectral Signatures of Jet-driven Bow Shocks

    NASA Astrophysics Data System (ADS)

    Lefloch, B.; Cabrit, S.; Busquet, G.; Codella, C.; Ceccarelli, C.; Cernicharo, J.; Pardo, J. R.; Benedettini, M.; Lis, D. C.; Nisini, B.

    2012-10-01

    The unprecedented sensitivity of Herschel coupled with the high resolution of the HIFI spectrometer permits studies of the intensity-velocity relationship I(v) in molecular outflows, over a higher excitation range than possible up to now. Over the course of the CHESS Key Program, we have observed toward the bright bow shock region L1157-B1, the CO rotational transitions between J = 5-4 and J = 16-15 with HIFI, and the J = 1-0, 2-1, and 3-2 with the IRAM 30 m and the Caltech Submillimeter Observatory telescopes. We find that all the line profiles I CO(v) are well fit by a linear combination of three exponential laws vpropexp (- |v/v 0|) with v 0 = 12.5, 4.4, and 2.5 km s-1. The first component dominates the CO emission at J >= 13, as well as the high-excitation lines of SiO and H2O. The second component dominates for 3 <= J up <= 10 and the third one for J up <= 2. We show that these exponentials are the signature of quasi-isothermal shocked gas components: the impact of the jet against the L1157-B1 bow shock (T k ~= 210 K), the walls of the outflow cavity associated with B1 (T k ~= 64 K), and the older cavity L1157-B2 (T k ~= 23 K), respectively. Analysis of the CO line flux in the large-velocity gradient approximation further shows that the emission arises from dense gas (n(H2) >= 105-106 cm-3) close to LTE up to J = 20. We find that the CO J = 2-1 intensity-velocity relation observed in various other molecular outflows is satisfactorily fit by similar exponential laws, which may hold an important clue to their entrainment process.

  14. mhpT encodes an active transporter involved in 3-(3-hydroxyphenyl)propionate catabolism by Escherichia coli K-12.

    PubMed

    Xu, Ying; Chen, Bing; Chao, Hongjun; Zhou, Ning-Yi

    2013-10-01

    Escherichia coli K-12 utilizes 3-(3-hydroxyphenyl)propionate (3HPP) as a sole carbon and energy source. Among the genes in its catabolic cluster in the genome, mhpT was proposed to encode a hypothetical transporter. Since no transporter for 3HPP uptake has been identified, we investigated whether MhpT is responsible for 3HPP uptake. MhpT fused with green fluorescent protein was found to be located at the periphery of cells by confocal microscopy, consistent with localization to the cytoplasmic membrane. Gene knockout and complementation studies clearly indicated that mhpT is essential for 3HPP catabolism in E. coli K-12 W3110 at pH 8.2. Uptake assays with (14)C-labeled substrates demonstrated that strain W3110 and strain W3110ΔmhpT containing recombinant MhpT specifically transported 3HPP but not benzoate, 3-hydroxybenzoate, or gentisate into cells. Energy dependence assays suggested that MhpT-mediated 3HPP transport was driven by the proton motive force. The change of Ala-272 of MhpT to a histidine, surprisingly, resulted in enhanced transport activity, and strain W3110ΔmhpT containing the MhpT A272H mutation had a slightly higher growth rate than the wild-type strain at pH 8.2. Hence, we demonstrated that MhpT is a specific 3HPP transporter and vital for E. coli K-12 W3110 growth on this substrate under basic conditions.

  15. NRC Microwave Refractive Index Gas Thermometry Implementation Between 24.5 K and 84 K

    NASA Astrophysics Data System (ADS)

    Rourke, P. M. C.

    2017-07-01

    The implementation of microwave refractive index gas thermometry at the National Research Council between 24.5 K and 84 K is reported. A new gas-handling system for accurate control and measurement of experimental gas pressure has been constructed, and primary thermometry measurements have been taken using a quasi-spherical copper resonator and helium gas at temperatures corresponding to three defining fixed points of the International Temperature Scale of 1990 (ITS-90). These measurements indicate differences between the thermodynamic temperature T and ITS-90 temperature T_{90} of ( T - T_{90} ) = -0.60 ± 0.56 mK at T_{90} = 24.5561 K, ( T - T_{90} ) = -2.0 ± 1.3 mK at T_{90} = 54.3584 K, and ( T - T_{90} ) = -4.0 ± 2.9 mK at T_{90} = 83.8058 K. The present results at T_{90} = 24.5561 K and T_{90} = 83.8058 K agree with previously reported measurements from other primary thermometry techniques of acoustic gas thermometry and dielectric constant gas thermometry, and the result at T_{90} = 54.3584 K provides new information in a temperature region where there is a gap in other recent data sets.

  16. Aerobic growth of Anoxybacillus pushchinoensis K1(T): emended descriptions of A. pushchinoensis and the genus Anoxybacillus

    NASA Technical Reports Server (NTRS)

    Pikuta, Elena; Cleland, David; Tang, Jane

    2003-01-01

    In this work, corrections are made to the descriptions of the species Anoxybacillus pushchinoensis corrig. and the genus ANOXYBACILLUS: Experiments to determine the relationship of A. pushchinoensis K1(T) to oxygen showed that it was capable of aerobic growth, but preferred to grow anaerobically. During aerobic growth, the redox indicator resazurin was reduced as a result of hydrogen gas production. The facultatively anaerobic nature of K1(T) was ascertained by cultivation in aerobic liquid medium, where growth began at the bottom of the tube. The anaerobic nature of K1(T) was also indicated by a negative catalase reaction. This work is submitted to correct the description of the species A. pushchinoensis from obligate anaerobe to aerotolerant anaerobe and to emend the description of the genus Anoxybacillus from obligate anaerobes or facultative anaerobes to aerotolerant anaerobes or facultative anaerobes.

  17. Delocalized metallic state on insulating, disordered BiSbTeSe2 thin films - a test of Z2 protection.

    NASA Astrophysics Data System (ADS)

    Gopal, Rk; Singh, Sourabh; Sarkar, Jit; Patro, Reshma; Roy, Subhadip; Mitra, Chiranjib; Quantum computation; Topological matter Group Team

    We present thickness and temperature dependent magneto transport properties of bulk insulating and granular BiSbTeSe2 thin films, grown by pulsed laser deposition technique. The temperature dependent resistivity (R-T) of these films is found to be insulating (d ρ/dT <0) and resistivity changes thrice the magnitude measured at room temperature as temperature is varied from 300K to 1.8K. On application of small perpendicular magnetic field in the low temperature regime, the R-T takes an upward shift from the zero field R-T - a trademark signature of a metallic state on an insulating bulk film. The grain boundaries in these films, as seen by scanning electron microscopy, present an additional disorder and hence confinement/trapping centers to the surface Dirac states in comparison to the films grown by molecular beam epitaxy and single crystals, which have atomically flat surface. Therefore these films present real test for the topological protection of surface Dirac states and their immunity against localization which is known as Z2 protection. From the magnetoresistance (MR) measurements at low temperatures a sharp and relatively large rise in MR is found a signature of weak - antilocalization (WAL) -a signature of topologically protected surface states. The WAL analysis of the MR data reveals a phase breaking length of the order of grain size suggesting that grain Author is grateful to the Government of India and IISER-Kolkata for providing funding and experimental facilities for the following research work.

  18. Small-molecule RORγt antagonists inhibit T helper 17 cell transcriptional network by divergent mechanisms.

    PubMed

    Xiao, Sheng; Yosef, Nir; Yang, Jianfei; Wang, Yonghui; Zhou, Ling; Zhu, Chen; Wu, Chuan; Baloglu, Erkan; Schmidt, Darby; Ramesh, Radha; Lobera, Mercedes; Sundrud, Mark S; Tsai, Pei-Yun; Xiang, Zhijun; Wang, Jinsong; Xu, Yan; Lin, Xichen; Kretschmer, Karsten; Rahl, Peter B; Young, Richard A; Zhong, Zhong; Hafler, David A; Regev, Aviv; Ghosh, Shomir; Marson, Alexander; Kuchroo, Vijay K

    2014-04-17

    We identified three retinoid-related orphan receptor gamma t (RORγt)-specific inhibitors that suppress T helper 17 (Th17) cell responses, including Th17-cell-mediated autoimmune disease. We systemically characterized RORγt binding in the presence and absence of drugs with corresponding whole-genome transcriptome sequencing. RORγt acts as a direct activator of Th17 cell signature genes and a direct repressor of signature genes from other T cell lineages; its strongest transcriptional effects are on cis-regulatory sites containing the RORα binding motif. RORγt is central in a densely interconnected regulatory network that shapes the balance of T cell differentiation. Here, the three inhibitors modulated the RORγt-dependent transcriptional network to varying extents and through distinct mechanisms. Whereas one inhibitor displaced RORγt from its target loci, the other two inhibitors affected transcription predominantly without removing DNA binding. Our work illustrates the power of a system-scale analysis of transcriptional regulation to characterize potential therapeutic compounds that inhibit pathogenic Th17 cells and suppress autoimmunity. Copyright © 2014 Elsevier Inc. All rights reserved.

  19. CORONAL AND CHROMOSPHERIC SIGNATURES OF LARGE-SCALE DISTURBANCES ASSOCIATED WITH A MAJOR SOLAR ERUPTION

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Zong, Weiguo; Dai, Yu, E-mail: ydai@nju.edu.cn

    We present both coronal and chromospheric observations of large-scale disturbances associated with a major solar eruption on 2005 September 7. In the Geostationary Operational Environmental Satellites/Solar X-ray Imager (SXI), arclike coronal brightenings are recorded propagating in the southern hemisphere. The SXI front shows an initially constant speed of 730 km s{sup −1} and decelerates later on, and its center is near the central position angle of the associated coronal mass ejection (CME) but away from the flare site. Chromospheric signatures of the disturbances are observed in both Mauna Loa Solar Observatory (MLSO)/Polarimeter for Inner Coronal Studies Hα and MLSO/Chromospheric Helium Imore » Imaging Photometer He i λ10830 and can be divided into two parts. The southern signatures occur in regions where the SXI front sweeps over, with the Hα bright front coincident with the SXI front, while the He i dark front lags the SXI front but shows a similar kinematics. Ahead of the path of the southern signatures, oscillations of a filament are observed. The northern signatures occur near the equator, with the Hα and He i fronts coincident with each other. They first propagate westward and then deflect to the north at the boundary of an equatorial coronal hole. Based on these observational facts, we suggest that the global disturbances are associated with the CME lift-off and show a hybrid nature: a mainly non-wave CME flank nature for the SXI signatures and the corresponding southern chromospheric signatures, and a shocked fast-mode coronal MHD wave nature for the northern chromospheric signatures.« less

  20. Relaxation and anomalous T- and H-dependence of the μ coefficient in (K,Ba)BiO3 superconductors

    NASA Astrophysics Data System (ADS)

    Klein, T.; Harneit, W.; Joumard, I.; Marcus, J.; Escribe-Filippini, C.; Feinberg, D.

    1998-04-01

    Ac shielding and classical dc relaxation experiments have been used to study the flux creep phenomena in the cubic (K,Ba)BiO3 superconductor (Tc ~ 30 K). The relaxation rate is found to be constant (S ~ 1.5%) at low temperature and magnetic field and increases sharply as the vortex-glass transition line is approached. This behavior can be attributed to an anomalous decrease of the μ exponent (U(J) = U0(J0/J)μ) close to Tg(H). In this regime, the temperature dependence of the apparent critical current J is then directly related to μ(T) as J(T) = J0/[kT/U0·ln (1/ωτ)]μ(T). A similar analysis can be made on the J(B) data recently published by Abulafia et al. (Phys. Rev. Lett., 77 (1996) 1597) on YBaCuO single crystals.

  1. Complete Genome Sequence of a Naturally Occurring Simian Foamy Virus Isolate from Rhesus Macaque (SFVmmu_K3T).

    PubMed

    Nandakumar, Subhiksha; Bae, Eunhae H; Khan, Arifa S

    2017-08-17

    The full-length genome sequence of a simian foamy virus (SFVmmu_K3T), isolated from a rhesus macaque ( Macaca mulatta ), was obtained using high-throughput sequencing. SFVmmu_K3T consisted of 12,983 bp and had a genomic organization similar to that of other SFVs, with long terminal repeats (LTRs) and open reading frames for Gag, Pol, Env, Tas, and Bet.

  2. Simulating boundary layer transition with low-Reynolds-number k-epsilon turbulence models. I - An evaluation of prediction characteristics. II - An approach to improving the predictions

    NASA Technical Reports Server (NTRS)

    Schmidt, R. C.; Patankar, S. V.

    1991-01-01

    The capability of two k-epsilon low-Reynolds number (LRN) turbulence models, those of Jones and Launder (1972) and Lam and Bremhorst (1981), to predict transition in external boundary-layer flows subject to free-stream turbulence is analyzed. Both models correctly predict the basic qualitative aspects of boundary-layer transition with free stream turbulence, but for calculations started at low values of certain defined Reynolds numbers, the transition is generally predicted at unrealistically early locations. Also, the methods predict transition lengths significantly shorter than those found experimentally. An approach to overcoming these deficiencies without abandoning the basic LRN k-epsilon framework is developed. This approach limits the production term in the turbulent kinetic energy equation and is based on a simple stability criterion. It is correlated to the free-stream turbulence value. The modification is shown to improve the qualitative and quantitative characteristics of the transition predictions.

  3. Deep Surveying of the Transcriptional and Alternative Splicing Signatures for Decidual CD8+ T Cells at the First Trimester of Human Healthy Pregnancy.

    PubMed

    Zeng, Weihong; Liu, Xinmei; Liu, Zhicui; Zheng, Ying; Yu, Tiantian; Fu, Shaliu; Li, Xiao; Zhang, Jing; Zhang, Siming; Ma, Xiaoling; Liu, Xiao-Rui; Qin, Xiaoli; Khanniche, Asma; Zhang, Yan; Tian, Fuju; Lin, Yi

    2018-01-01

    Decidual CD8 + (dCD8) T cells have been proposed to play important roles in immune protection against the invading pathogens and in tolerance toward the growing semi-allogeneic fetus during early pregnancy. However, their phenotypic and functional characteristics remain poorly defined. Here, we performed the first analysis of the transcriptional and alternative splicing (AS) signatures for human first-trimester dCD8 T cells using high-throughput mRNA sequencing. Our data revealed that dCD8 T cells have distinct transcriptional and AS landscapes when compared with their autologous peripheral blood CD8 + (pCD8) T counterparts. Furthermore, human dCD8 T cells were observed to contain CD8-Treg and effector-memory T-cell subsets, and display enhanced functionality in terms of degranulation and cytokine production on a per-cell basis. Additionally, we have identified the novel splice junctions that use a high ratio of the non-canonical splicing motif GC-AG and found that AS is not a major contributor to the gene expression-level changes between paired pCD8 and dCD8 T cells. Together, our findings not only provide a comprehensive framework of the transcriptional and AS landscapes but also reveal the functional feature of human dCD8 T cells, which are of great importance in understanding the biology of these cells and the physiology of human healthy pregnancy.

  4. Petrography and geochemistry of distal spherules from the K-Pg boundary in the Umbria-Marche region (Italy) and their origin as fractional condensates and melts in the Chicxulub impact plume

    NASA Astrophysics Data System (ADS)

    Belza, J.; Goderis, S.; Montanari, A.; Vanhaecke, F.; Claeys, P.

    2017-04-01

    The impact spherules from the distal K-Pg boundary sections are considered to represent silicate droplets condensed and solidified from a laterally expanding, cooling vapor plume formed upon hypervelocity impact. In the present-day Cretaceous-Paleogene boundary (K-Pg) spherule population of the Umbria-Marche region in Italy, three texturally and compositionally distinct types of impact spherules can be identified that are dominantly composed of (1) goethite, (2) K-feldspar or (3) glauconite. Although these phases represent the products of diagenetic alteration, the remnant textural characteristics of the spherules and the type of alteration product are indicative of the spherules' original compositions, which are important to constrain the physicochemical conditions prevalent throughout the impact vapor plume. The presence of relict ghost crystals and the identification of 'iddingsite' indicate that goethite likely represents pseudomorphic replacement after olivine. Goethite spherules contain numerous dendritic, euhedral and skeletal spinel crystals variably dispersed in the groundmass. In terms of textures, five types of goethite spherules can be distinguished, showing striking similarities to chondrules: (I) skeletal, (II) barred, (III) radial/barred, (IV) porphyritic and (V) relict/granular. The morphology of both spinel and olivine (pseudomorphs) is consistent with established formation conditions (peak temperature Tmax, degree of supercooling ΔT, cooling rate, presence of nucleation sites) for different chondrule textural types. As goethite spherules are anomalously enriched in moderately to highly refractory lithophile (Sc, V, Y, Zr, Nb, REE, Hf, Ta, Th) and siderophile (Cr, Co, Ni, W, Ir, Pt) elements, they are interpreted to represent (diagenetically altered) refractory (high-T) condensation products from a well-homogenized plume consisting of both vaporized target and projectile matter. Different from goethite spherules, K-feldspar spherules exhibit

  5. Schmidt boundaries of foliated space-times

    NASA Astrophysics Data System (ADS)

    Barletta, Elisabetta; Dragomir, Sorin; Magliaro, Marco

    2014-10-01

    For every (p+q)-dimensional foliated Lorentzian manifold (M, g, F), where F is a codimension q space-like foliation, we build its Q-completion \\bar{M} and Q-boundary {{\\partial }Q}M. These are analogs, within transverse Lorentzian geometry of foliated manifolds, to the b-completion and b-boundary \\dot{M} (due to (Schmidt 1971 Gen. Relativ. Gravit. 1 269-80)). The bundle morphism {{h}\\bot }:O(M,F,g)\\to O(F,{{g}Q}) (mapping the o(p)+o(1,q-1)-component of the Levi-Civita connection 1-form of (M,g) into the unique torsion-free adapted connection on the bundle of Lorentzian transverse orthonormal frames) is shown to induce a surjective continuous map \\partial {{h}\\bot }:{{\\partial }adt}M\\to {{\\partial }Q}M of the adapted boundary ({{\\partial }adt}M\\subset \\dot{M}) of M onto its Q-boundary. Map \\partial {{h}\\bot } is used to characterize {{\\partial }Q}M as the set of end points {{lim }t\\to {{1-}}}γ (t), in the topology of \\bar{M}, of all Q-incomplete curves γ :[0,1)\\to M. As an application we determine a class {{(\\partial {{h}\\bot })}-1}(P)\\subset \\dot{M} of b-boundary points, where M={R}× (0,m)× {{S}2}, g is Schwartzschild's metric, and F is the codimension two foliation tangent to the Killing vector fields \\partial /\\partial t and \\partial /\\partial \\varphi .

  6. Structure measurements in a synthetic turbulent boundary layer

    NASA Astrophysics Data System (ADS)

    Arakeri, Jaywant H.

    Extensive hot-wire measurements were made to determine the structure of the large eddy in a synthetic turbulent boundary layer on a flat-plate model. The experiments were carried out in a wind tunnel at a nominal free-stream velocity of 12 m/s. The synthetic turbulent boundary layer had a hexagonal pattern of eddies and a ratio of streamwise scale to spanwise scale of 3.2:1. The measured celerity of the large eddy was 84.2 percent of the free-stream velocity. There was some loss of coherence, but very little distortion, as the eddies moved downstream. Several mean properties of the synthetic boundary layer were found to agree quite well with the mean properties of a natural turbulent boundary layer at the same Reynolds number. The large eddy is composed of a pair of primary counter-rotating vortices about five delta long in the steamwise direction and about one delta apart in the spanwise direction, where delta is the mean boundary-layer thickness. Definite signatures are obtained in terms of the mean skin-friction coefficient and the mean wake parameter averaged at constant phase. Velocities induced by the vortices are partly responsible for entrainment of irrotational fluid, for transport of momentum, for generation of Reynolds stresses, and for maintenance of streamwise and normal velocity in the outer flow.

  7. k-t SENSE-accelerated Myocardial Perfusion MR Imaging at 3.0 Tesla - comparison with 1.5 Tesla

    PubMed Central

    Plein, Sven; Schwitter, Juerg; Suerder, Daniel; Greenwood, John P.; Boesiger, Peter; Kozerke, Sebastian

    2008-01-01

    Purpose To determine the feasibility and diagnostic accuracy of high spatial resolution myocardial perfusion MR at 3.0 Tesla using k-space and time domain undersampling with sensitivity encoding (k-t SENSE). Materials and Methods The study was reviewed and approved by the local ethic review board. k-t SENSE perfusion MR was performed at 1.5 Tesla and 3.0 Tesla (saturation recovery gradient echo pulse sequence, repetition time/echo time 3.0ms/1.0ms, flip angle 15°, 5x k-t SENSE acceleration, spatial resolution 1.3×1.3×10mm3). Fourteen volunteers were studied at rest and 37 patients during adenosine stress. In volunteers, comparison was also made with standard-resolution (2.5×2.5×10mm3) 2x SENSE perfusion MR at 3.0 Tesla. Image quality, artifact scores, signal-to-noise ratios (SNR) and contrast-enhancement ratios (CER) were derived. In patients, diagnostic accuracy of visual analysis to detect >50% diameter stenosis on quantitative coronary angiography was determined by receiver-operator-characteristics (ROC). Results In volunteers, image quality and artifact scores were similar for 3.0 Tesla and 1.5 Tesla, while SNR was higher (11.6 vs. 5.6) and CER lower (1.1 vs. 1.5, p=0.012) at 3.0 Tesla. Compared with standard-resolution perfusion MR, image quality was higher for k-t SENSE (3.6 vs. 3.1, p=0.04), endocardial dark rim artifacts were reduced (artifact thickness 1.6mm vs. 2.4mm, p<0.001) and CER similar. In patients, area under the ROC curve for detection of coronary stenosis was 0.89 and 0.80, p=0.21 for 3.0 Tesla and 1.5 Tesla, respectively. Conclusions k-t SENSE accelerated high-resolution perfusion MR at 3.0 Tesla is feasible with similar artifacts and diagnostic accuracy as at 1.5 Tesla. Compared with standard-resolution perfusion MR, image quality is improved and artifacts are reduced. PMID:18936311

  8. REDEFINING THE BOUNDARIES OF INTERPLANETARY CORONAL MASS EJECTIONS FROM OBSERVATIONS AT THE ECLIPTIC PLANE

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Cid, C.; Palacios, J.; Saiz, E.

    2016-09-01

    On 2015 January 6–7, an interplanetary coronal mass ejection (ICME) was observed at L1. This event, which can be associated with a weak and slow coronal mass ejection, allows us to discuss the differences between the boundaries of the magnetic cloud and the compositional boundaries. A fast stream from a solar coronal hole surrounding this ICME offers a unique opportunity to check the boundaries’ process definition and to explain differences between them. Using Wind and ACE data, we perform a complementary analysis involving compositional, magnetic, and kinematic observations providing relevant information regarding the evolution of the ICME as travelling awaymore » from the Sun. We propose erosion, at least at the front boundary of the ICME, as the main reason for the difference between the boundaries, and compositional signatures as the most precise diagnostic tool for the boundaries of ICMEs.« less

  9. Analysis Strategy and Selection Procedure for νμ Charged Current Inclusive Interactions using the ^0 Detector (P0D) and the Time Projection Chambers of the T2K Experiment

    NASA Astrophysics Data System (ADS)

    Reinherz-Aronis, Erez; Clifton, Alex; Das, Raj; Toki, Walter; Johnson, Robert; Marino, Alysia; Yuan, Tianlu

    2013-04-01

    νμ Charge-Current events are produced and collected by the Near Detectors (ND280) in the Tokai to Kamioka (T2K) experiment. This talk focuses on those interactions that are created in the Pi-Zero detector (PøD) and whose momentum is measured by the Time Projection Chambers (TPC). The description of the analysis event selection is presented which includes Data-Quality cuts, Beam Quality parameters, and Fiducial Volume boundaries which are applied on the beginning of the PøD track. In addition the matching procedure of a TPC track to a PøD track and the optimization of this procedure in presented.

  10. Gas phase kinetics of the OH + CH3CH2OH reaction at temperatures of the interstellar medium (T = 21-10^7 K)

    NASA Astrophysics Data System (ADS)

    Ocaña, A. J.; Blázquez, S.; Ballesteros, B.; Canosa, A.; Antiñolo, M.; Albaladejoab, J.; Jiménez, E.

    2018-02-01

    Ethanol, CH3CH2OH, has been unveiled in the interstellar medium (ISM) by radioastronomy and it is thought to be released into the gas phase after the warm-up phase of the grain surface, where it is formed. Once in the gas phase, it can be destroyed by different reactions with atomic and radical species, such as hydroxyl (OH) radicals. The knowledge of the rate coefficients of all these processes at temperatures of the ISM is essential in the accurate interpretation of the observed abundances. In this work, we have determined the rate coefficient for the reaction of OH with CH3CH2OH (k(T)) between 21 and 10^7 K by employing the pulsed and continuous CRESU (Cinétique de Réaction en Ecoulement Supersonique Uniforme, which means Reaction Kinetics in a Uniform Supersonic Flow) technique. The pulsed laser photolysis technique was used for generating OH radicals, whose time evolution was monitored by laser induced fluorescence. An increase of approximately 4 times was observed for k(21 K) with respect to k(10^7 K). With respect to k(300 K), the OH-reactivity at 21 K is enhanced by two orders of magnitude. The obtained T-expression in the investigated temperature range is k(T) = (2.1 ± 0.5) × 10^-11 (T/300 K)-(0.71±0.10) cm^3 molecule^-1 s^-1. In addition, the pressure dependence of k(T) has been investigated at several temperatures between 21 K and 90 K. No pressure dependence of k(T) was observed in the investigated ranges. This may imply that this reaction is purely bimolecular or that the high-pressure limit is reached at the lowest total pressure experimentally accessible in our system. From our results, k(T) at usual IS temperatures (˜10-100 K) is confirmed to be very fast. Typical rate coefficients can be considered to range within about 4 × 10^-11 cm^3 molecule^-1 s^-1 at 100 K and around 1 × 10^-10 cm^3 molecule^-1 s^-1 at 20 K. The extrapolation of k at the lowest temperatures of the dense molecular clouds of ISM is also discussed in this paper.

  11. Thermodynamic investigation of the phase equilibrium boundary between TiO2 rutile and its α-PbO2-type high-pressure polymorph

    NASA Astrophysics Data System (ADS)

    Kojitani, Hiroshi; Yamazaki, Monami; Kojima, Meiko; Inaguma, Yoshiyuki; Mori, Daisuke; Akaogi, Masaki

    2018-06-01

    Heat capacity (C P) of rutile and α-PbO2 type TiO2 (TiO2-II) were measured by the differential scanning calorimetry and thermal relaxation method. Using the results, standard entropies at 1 atm and 298.15 K of rutile and TiO2-II were determined to be 50.04(4) and 46.54(2) J/mol K, respectively. Furthermore, thermal expansivity (α) determined by high-temperature X-ray diffraction measurement and mode Grüneisen parameters obtained by high-pressure Raman spectroscopy suggested the thermal Grüneisen parameter (γ th) for TiO2-II of 1.7(1). By applying the obtained low-temperature C P and γ th, the measured C P and α data of TiO2-II were extrapolated to higher temperature region using a lattice vibrational model calculation, as well as rutile. Internally consistent thermodynamic data sets of both rutile and TiO2-II assessed in this study were used to thermodynamically calculate the rutile‒TiO2-II phase equilibrium boundary. The most plausible boundary was obtained to be P (GPa) = 0.0074T (K) - 1.7. Our boundary suggests that the crystal growth of TiO2-II observed below 5.5 GPa and 900 K in previous studies advanced in its stability field. The phase boundary calculation also suggested small, exothermic phase transition enthalpy from rutile to TiO2-II at 1 atm and 298.15 K of - 0.5 to - 1.1 kJ/mol. This implies that the thermodynamic stability of rutile at 1 atm above room temperature is due to larger contribution of entropy term.

  12. k-t accelerated aortic 4D flow MRI in under two minutes: Feasibility and impact of resolution, k-space sampling patterns, and respiratory navigator gating on hemodynamic measurements.

    PubMed

    Bollache, Emilie; Barker, Alex J; Dolan, Ryan Scott; Carr, James C; van Ooij, Pim; Ahmadian, Rouzbeh; Powell, Alex; Collins, Jeremy D; Geiger, Julia; Markl, Michael

    2018-01-01

    To assess the performance of highly accelerated free-breathing aortic four-dimensional (4D) flow MRI acquired in under 2 minutes compared to conventional respiratory gated 4D flow. Eight k-t accelerated nongated 4D flow MRI (parallel MRI with extended and averaged generalized autocalibrating partially parallel acquisition kernels [PEAK GRAPPA], R = 5, TRes = 67.2 ms) using four k y -k z Cartesian sampling patterns (linear, center-out, out-center-out, random) and two spatial resolutions (SRes1 = 3.5 × 2.3 × 2.6 mm 3 , SRes2 = 4.5 × 2.3 × 2.6 mm 3 ) were compared in vitro (aortic coarctation flow phantom) and in 10 healthy volunteers, to conventional 4D flow (16 mm-navigator acceptance window; R = 2; TRes = 39.2 ms; SRes = 3.2 × 2.3 × 2.4 mm 3 ). The best k-t accelerated approach was further assessed in 10 patients with aortic disease. The k-t accelerated in vitro aortic peak flow (Qmax), net flow (Qnet), and peak velocity (Vmax) were lower than conventional 4D flow indices by ≤4.7%, ≤ 11%, and ≤22%, respectively. In vivo k-t accelerated acquisitions were significantly shorter but showed a trend to lower image quality compared to conventional 4D flow. Hemodynamic indices for linear and out-center-out k-space samplings were in agreement with conventional 4D flow (Qmax ≤ 13%, Qnet ≤ 13%, Vmax ≤ 17%, P > 0.05). Aortic 4D flow MRI in under 2 minutes is feasible with moderate underestimation of flow indices. Differences in k-space sampling patterns suggest an opportunity to mitigate image artifacts by an optimal trade-off between scan time, acceleration, and k-space sampling. Magn Reson Med 79:195-207, 2018. © 2018 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  13. Unconditionally Secure Blind Signatures

    NASA Astrophysics Data System (ADS)

    Hara, Yuki; Seito, Takenobu; Shikata, Junji; Matsumoto, Tsutomu

    The blind signature scheme introduced by Chaum allows a user to obtain a valid signature for a message from a signer such that the message is kept secret for the signer. Blind signature schemes have mainly been studied from a viewpoint of computational security so far. In this paper, we study blind signatures in unconditional setting. Specifically, we newly introduce a model of unconditionally secure blind signature schemes (USBS, for short). Also, we propose security notions and their formalization in our model. Finally, we propose a construction method for USBS that is provably secure in our security notions.

  14. Grain boundary and triple junction diffusion in nanocrystalline copper

    NASA Astrophysics Data System (ADS)

    Wegner, M.; Leuthold, J.; Peterlechner, M.; Song, X.; Divinski, S. V.; Wilde, G.

    2014-09-01

    Grain boundary and triple junction diffusion in nanocrystalline Cu samples with grain sizes, , of ˜35 and ˜44 nm produced by spark plasma sintering were investigated by the radiotracer method using the 63Ni isotope. The measured diffusivities, Deff, are comparable with those determined previously for Ni grain boundary diffusion in well-annealed, high purity, coarse grained, polycrystalline copper, substantiating the absence of a grain size effect on the kinetic properties of grain boundaries in a nanocrystalline material at grain sizes d ≥ 35 nm. Simultaneously, the analysis predicts that if triple junction diffusion of Ni in Cu is enhanced with respect to the corresponding grain boundary diffusion rate, it is still less than 500ṡDgb within the temperature interval from 420 K to 470 K.

  15. Charged-current multiple pion production using νμ in the PøD in the T2K experiment

    NASA Astrophysics Data System (ADS)

    Davis, Scott

    2013-04-01

    The T2K experiment is a long-baseline, off-axis neutrino oscillation experiment designed to search for the appearance of νe in a νμ beam. The Pi-Zero Detector (PøD) of the T2K off-axis near detector (ND280) is used to measure properties of the neutrino beam and measure cross sections relevant to the beam's energy. As the PøD contains a variety of nuclei, we can measure the cross section of various production modes on several targets. At the beam energies of T2K, the production of multiple pions, of any type, from neutrinos is not well understood. I will present the status of an analysis method to measure the production of multiple (2 or greater) pions from a charged-current interaction with νμ.

  16. Constitutive Behavior and Processing Map of T2 Pure Copper Deformed from 293 to 1073 K

    NASA Astrophysics Data System (ADS)

    Liu, Ying; Xiong, Wei; Yang, Qing; Zeng, Ji-Wei; Zhu, Wen; Sunkulp, Goel

    2018-02-01

    The deformation behavior of T2 pure copper compressed from 293 to 1073 K with strain rates from 0.01 to 10 s-1 was investigated. The constitutive equations were established by the Arrhenius constitutive model, which can be expressed as a piecewise function of temperature with two sections, in the ranges 293-723 K and 723-1073 K. The processing maps were established according to the dynamic material model for strains of 0.2, 0.4, 0.6, and 0.8, and the optimal processing parameters of T2 copper were determined accordingly. In order to obtain a better understanding of the deformation behavior, the microstructures of the compressed samples were studied by electron back-scattered diffraction. The grains tend to be more refined with decreases in temperature and increases in strain rate.

  17. NMR characterization of sulphur substitution effects in the K xFe 2-ySe 2-xS z high-T c superconductor

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Torchetti, D. A.; Imai, T.; Lei, H. C.

    2012-04-17

    We present a 77Se NMR study of the effect of S substitution in the high-T c superconductor K xFe 2-ySe 2-zS z in a temperature range up to 250 K. We examine two S concentrations, with z=0.8 (T c~ 26 K) and z=1.6 (nonsuperconducting). The samples containing sulphur exhibit broader NMR line shapes than the K xFe 2Se 2 sample due to local disorder in the Se environment. Our Knight shift 77K data indicate that in all samples, uniform spin susceptibility decreases with temperature, and that the magnitude of the Knight shift itself decreases with increased S concentration. In addition,more » S substitution progressively suppresses low-frequency spin fluctuations. None of the samples exhibit an enhancement of low-frequency antiferromagnetic spin fluctuations near T c in 1/T 1T, as seen in FeSe.« less

  18. Iron-silicate reaction at CMB and formation of core signature in plume source region: An experimental approach

    NASA Astrophysics Data System (ADS)

    Ohtani, E.; Sakai, T.; Kondo, T.; Miyahara, M.; Terasaki, H.

    2006-12-01

    Recent progress of laser heating diamond anvil cell (LHDAC) techniques made it possible to achieve the conditions of pressures and temperatures exceeding the core-mantle boundary conditions, i.e., 130 GPa and 3000-3500 K, and we can now be possible to study the recovered samples from the condition of the core- mantle boundary. We used the focused ion beam (FIB) method for preparation of the recovered samples and the analytical transmission electron microscope (ATEM) for their characterization, which are the ideal tools for studying the recovered samples from mega-bar conditions. In order to clarify the structure of the bottom of the CMB region, we have conducted high pressure and temperature experiments on the reaction between metallic iron and post-perovskite which can simulate the chemical reactions at CMB. We have conducted reaction experiments between molten iron and post-perovskite at the conditions equivalent to the CMB, 139 GPa and 3000 K. Significant amounts of oxygen up to 6.3 wt. percent and silicon up to 4.0 wt. percent are dissolved in metallic iron, and the solubility of silicon and oxygen in metallic iron can readily account for 7-10 wt. percent of the core density deficit. The dissolution of silicon into molten iron in the primordial magma ocean with the depth of the deep lower mantle can account for the Mg/Si ratio of the mantle higher than that of C1-chondrite. The dihedral angle between post-perovskite and molten iron is around 67 degrees, which is larger than that of perovskite and molten iron, 51 degrees (Takafuji et al., 2004). A core signature has been reported as Re and Os isotope anomalies in the plume magmas originating from the core-mantle boundary region, and such isotopic anomalies can be easily generated by contamination of 0.5-1 wt. percent of the trapped core metal at CMB (e.g., Brandon et al., 2005). A significant disturbance is expected at CMB to form a mixing region of the mantle and core materials as was suggested by Kellogg et al

  19. Final report on APMP.T-K7.1 key comparison of water triple point cells, bilateral NMIJ-VMI

    NASA Astrophysics Data System (ADS)

    Yamazawa, Kazuaki; Nakano, Tohru; Thanh Binh, Pham

    2018-01-01

    APMP.T-K7.1, was held from July 2014 to May 2015 to compare the national realizations of the water triple point between NMIJ (Japan) and VMI (Vietnam). To reach the objective, VMI sent a transfer cell to NMIJ and stated a value for the temperature difference of the transfer cell, relative to the corresponding national standard, representing 273.16 K. This report presents the results of the TPW comparison, gives detailed information about the measurements made at the NMIJ and at the VMI, and aims to link the results of APMP.T-K7.1 to APMP.T-K7 and CCT-K7. The results of this key comparison are also represented in the form of degrees of equivalence for the purposes of the MRA. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCT, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  20. Factor models for cancer signatures

    NASA Astrophysics Data System (ADS)

    Kakushadze, Zura; Yu, Willie

    2016-11-01

    We present a novel method for extracting cancer signatures by applying statistical risk models (http://ssrn.com/abstract=2732453) from quantitative finance to cancer genome data. Using 1389 whole genome sequenced samples from 14 cancers, we identify an ;overall; mode of somatic mutational noise. We give a prescription for factoring out this noise and source code for fixing the number of signatures. We apply nonnegative matrix factorization (NMF) to genome data aggregated by cancer subtype and filtered using our method. The resultant signatures have substantially lower variability than those from unfiltered data. Also, the computational cost of signature extraction is cut by about a factor of 10. We find 3 novel cancer signatures, including a liver cancer dominant signature (96% contribution) and a renal cell carcinoma signature (70% contribution). Our method accelerates finding new cancer signatures and improves their overall stability. Reciprocally, the methods for extracting cancer signatures could have interesting applications in quantitative finance.

  1. Twisted quantum double model of topological order with boundaries

    NASA Astrophysics Data System (ADS)

    Bullivant, Alex; Hu, Yuting; Wan, Yidun

    2017-10-01

    We generalize the twisted quantum double model of topological orders in two dimensions to the case with boundaries by systematically constructing the boundary Hamiltonians. Given the bulk Hamiltonian defined by a gauge group G and a 3-cocycle in the third cohomology group of G over U (1 ) , a boundary Hamiltonian can be defined by a subgroup K of G and a 2-cochain in the second cochain group of K over U (1 ) . The consistency between the bulk and boundary Hamiltonians is dictated by what we call the Frobenius condition that constrains the 2-cochain given the 3-cocyle. We offer a closed-form formula computing the ground-state degeneracy of the model on a cylinder in terms of the input data only, which can be naturally generalized to surfaces with more boundaries. We also explicitly write down the ground-state wave function of the model on a disk also in terms of the input data only.

  2. 40Ar-39Ar Ages of the Large Impact Structures Kara and Manicouagan and their Relevance to the Cretaceous-Tertiary and the Triassic-Jurassic Boundary

    NASA Astrophysics Data System (ADS)

    Trieloff, M.; Jessberger, E. K.

    1992-07-01

    Since the discovery of the iridium enrichment in Cretaceous- Tertiary boundary clays by Alvarez et al. (1980) the search for the crater of the K/T impactor is in progress. Petrographic evidence at the K/T boundary material points towards an impact into an ocean as well as onto the continental crust, multiple K/T impacts are now being considered (Alvarez and Asaro, 1990). One candidate is the Kara crater in northern Siberia of which Kolesnikov et al. (1988) determined a K-Ar isochrone age of 65.6 +- 0.5 Ma, regarding this as indicating that the Kara bolide is at least one of the K/T impactors. Koeberl et al. (1990) determined ^40Ar-^39Ar ages of six impact melts ranging from 70 to 82 Ma and suggested rather an association to the Campanian- Maastrichtian boundary, another important extinction horizon 73 Ma ago (Harland et al., 1982). We dated with the ^40Ar-^39Ar technique four impact melts, KA2- 306, KA2-305, SA1-302 and AN9-182. The spectra have rather well- defined plateaus, shown with highly extended age scales (Fig. 1). The plateau ages range from 69.3 to 71.7 Ma. Our data do not support an association either with the Cretaceous-Tertiary or with the Campanian-Maastrichtian boundary. We deduce an age of 69-71 Ma for the Kara impact structure. Nazarov et al. (1991) have demonstrated by isotopic hydrogen studies that the Kara bolide impacted on dry land, while the last regression at the target area before the end of the Cretaceous occurred 69-70 Ma ago. Our data are consistent with an impact shortly after the regression. We further dated impact metamorphic anorthosite samples (10BD5 and 10BD3C) of the Manicouagan crater, Canada, which may be related to the Triassic-Jurassic boundary (McLaren and Goodfellow, 1990). The samples consist of two different phases, one degassing at low temperatures yielding a plateau age of 212 Ma and another phase which was degassed during the cratering event to varying degrees with apparent ages increasing up to 950 Ma, the age of the

  3. Nonlinear control of magnetic signatures

    NASA Astrophysics Data System (ADS)

    Niemoczynski, Bogdan

    Magnetic properties of ferrite structures are known to cause fluctuations in Earth's magnetic field around the object. These fluctuations are known as the object's magnetic signature and are unique based on the object's geometry and material. It is a common practice to neutralize magnetic signatures periodically after certain time intervals, however there is a growing interest to develop real time degaussing systems for various applications. Development of real time degaussing system is a challenging problem because of magnetic hysteresis and difficulties in measurement or estimation of near-field flux data. The goal of this research is to develop a real time feedback control system that can be used to minimize magnetic signatures for ferrite structures. Experimental work on controlling the magnetic signature of a cylindrical steel shell structure with a magnetic disturbance provided evidence that the control process substantially increased the interior magnetic flux. This means near field estimation using interior sensor data is likely to be inaccurate. Follow up numerical work for rectangular and cylindrical cross sections investigated variations in shell wall flux density under a variety of ambient excitation and applied disturbances. Results showed magnetic disturbances could corrupt interior sensor data and magnetic shielding due to the shell walls makes the interior very sensitive to noise. The magnetic flux inside the shell wall showed little variation due to inner disturbances and its high base value makes it less susceptible to noise. This research proceeds to describe a nonlinear controller to use the shell wall data as an input. A nonlinear plant model of magnetics is developed using a constant tau to represent domain rotation lag and a gain function k to describe the magnetic hysteresis curve for the shell wall. The model is justified by producing hysteresis curves for multiple materials, matching experimental data using a particle swarm algorithm, and

  4. Sub-kT/q Subthreshold-Slope Using Negative Capacitance in Low-Temperature Polycrystalline-Silicon Thin-Film Transistor

    PubMed Central

    Park, Jae Hyo; Jang, Gil Su; Kim, Hyung Yoon; Seok, Ki Hwan; Chae, Hee Jae; Lee, Sol Kyu; Joo, Seung Ki

    2016-01-01

    Realizing a low-temperature polycrystalline-silicon (LTPS) thin-film transistor (TFT) with sub-kT/q subthreshold slope (SS) is significantly important to the development of next generation active-matrix organic-light emitting diode displays. This is the first time a sub-kT/q SS (31.44 mV/dec) incorporated with a LTPS-TFT with polycrystalline-Pb(Zr,Ti)O3 (PZT)/ZrTiO4 (ZTO) gate dielectrics has been demonstrated. The sub-kT/q SS was observed in the weak inversion region at −0.5 V showing ultra-low operating voltage with the highest mobility (250.5 cm2/Vsec) reported so far. In addition, the reliability of DC negative bias stress, hot carrier stress and self-heating stress in LTPS-TFT with negative capacitance was investigated for the first time. It was found that the self-heating stress showed accelerated SS degradation due to the PZT Curie temperature. PMID:27098115

  5. Global Isotopic Signatures of Oceanic Island Basalts.

    DTIC Science & Technology

    1991-08-01

    and the__ WOODS HOLE OCEANOGRAPHIC INSTITUTION August 1991 ©Lynn A. Oschmann 1991 The author hereby grants to MIT, WHOI, and the U.S. Government...Massachusetts Institute of Technology! Woods Hole Oceanographic Institution Certified 1W ___ ____________________ Dr. Staidlc\\ R. I L, rt Senior Scientik, Woods ...Institute of T’echnology! Woods Hole Oceanographic Institution 3 GLOBAL ISOTOPIC SIGNATURES OF OCEANIC ISLAND BASALTS by LYNN A. OSCHMANN Submitted to the

  6. Boundary of the future of a surface

    DOE PAGES

    Akers, Chris; Bousso, Raphael; Halpern, Illan F.; ...

    2018-01-12

    We prove that the boundary of the future of a surface K consists precisely of the points p that lie on a null geodesic orthogonal to K such that between K and p there are no points conjugate to K nor intersections with another such geodesic. Our theorem has applications to holographic screens and their associated light sheets and in particular enters the proof that holographic screens satisfy an area law.

  7. Thermal boundary resistance between sapphire and aluminum monocrystals at low temperature

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Sahling, S.; Engert, J.; Gladun, A.

    1981-12-01

    The thermal boundary resistance at boundaries between monocrystalline sapphire and monocrystalline aluminum and between monocrystalline sapphire and polycrystalline aluminum has been measured in the temperature range from 0.1 to 6 K with aluminum in the superconducting and normal states. The ratio of the thermal boundary resistance of the aluminum monocrystals in the superconducting state to that in the normal state increases as the temperature is lowered, reaches a maximum at about 0.13 K, and decreases at still lower temperatures. At the maximum, the thermal boundary resistance in the superconducting state is two orders of magnitude larger than the resistance inmore » the normal state.« less

  8. On mechanical waves and Doppler shifts from moving boundaries

    DOE PAGES

    Christov, Ivan C.; Christov, Christo I.

    2017-02-01

    We investigate the propagation of infinitesimal harmonic mechanical waves emitted from a boundary with variable velocity and arriving at a stationary observer. In the classical Doppler effect, X s(t)=vt is the location of the source with constant velocity v. In the present work, however, we consider a source co-located with a moving boundary x=X s(t), where X s(t) can have an arbitrary functional form. For ‘slowly moving’ boundaries (i.e., ones for which the timescale set by the mechanical motion is large in comparison to the inverse of the frequency of the emitted wave), we present a multiple-scale asymptotic analysis of the moving boundary problem for the linear wave equation. Here, we obtain a closed-form leading-order (with respect to the latter small parameter) solution and show that the variable velocity of the boundary results not only in frequency modulation but also in amplitude modulation of the received signal. Consequently, our results extend the applicability of two basic tenets of the theory of a moving source on a stationary domain, specifically that (i)more » $$.\\atop{x}_s$$ for non-uniform boundary motion can be inserted in place of the constant velocity v in the classical Doppler formula and (ii) that the non-uniform boundary motion introduces variability in the amplitude of the wave. The specific examples of decelerating and oscillatory boundary motion are worked out and illustrated.« less

  9. Accelerated time-resolved three-dimensional MR velocity mapping of blood flow patterns in the aorta using SENSE and k-t BLAST.

    PubMed

    Stadlbauer, Andreas; van der Riet, Wilma; Crelier, Gerard; Salomonowitz, Erich

    2010-07-01

    To assess the feasibility and potential limitations of the acceleration techniques SENSE and k-t BLAST for time-resolved three-dimensional (3D) velocity mapping of aortic blood flow. Furthermore, to quantify differences in peak velocity versus heart phase curves. Time-resolved 3D blood flow patterns were investigated in eleven volunteers and two patients suffering from aortic diseases with accelerated PC-MR sequences either in combination with SENSE (R=2) or k-t BLAST (6-fold). Both sequences showed similar data acquisition times and hence acceleration efficiency. Flow-field streamlines were calculated and visualized using the GTFlow software tool in order to reconstruct 3D aortic blood flow patterns. Differences between the peak velocities from single-slice PC-MRI experiments using SENSE 2 and k-t BLAST 6 were calculated for the whole cardiac cycle and averaged for all volunteers. Reconstruction of 3D flow patterns in volunteers revealed attenuations in blood flow dynamics for k-t BLAST 6 compared to SENSE 2 in terms of 3D streamlines showing fewer and less distinct vortices and reduction in peak velocity, which is caused by temporal blurring. Solely by time-resolved 3D MR velocity mapping in combination with SENSE detected pathologic blood flow patterns in patients with aortic diseases. For volunteers, we found a broadening and flattering of the peak velocity versus heart phase diagram between the two acceleration techniques, which is an evidence for the temporal blurring of the k-t BLAST approach. We demonstrated the feasibility of SENSE and detected potential limitations of k-t BLAST when used for time-resolved 3D velocity mapping. The effects of higher k-t BLAST acceleration factors have to be considered for application in 3D velocity mapping. Copyright 2009 Elsevier Ireland Ltd. All rights reserved.

  10. K-decompositions and 3d gauge theories

    NASA Astrophysics Data System (ADS)

    Dimofte, Tudor; Gabella, Maxime; Goncharov, Alexander B.

    2016-11-01

    This paper combines several new constructions in mathematics and physics. Mathematically, we study framed flat PGL( K, ℂ)-connections on a large class of 3-manifolds M with boundary. We introduce a moduli space ℒ K ( M) of framed flat connections on the boundary ∂ M that extend to M. Our goal is to understand an open part of ℒ K ( M) as a Lagrangian subvariety in the symplectic moduli space {{X}}_K^{un}(partial M) of framed flat connections on the boundary — and more so, as a "K2-Lagrangian," meaning that the K2-avatar of the symplectic form restricts to zero. We construct an open part of ℒ K ( M) from elementary data associated with the hypersimplicial K-decomposition of an ideal triangulation of M, in a way that generalizes (and combines) both Thurston's gluing equations in 3d hyperbolic geometry and the cluster coordinates for framed flat PGL( K, ℂ)-connections on surfaces. By using a canonical map from the complex of configurations of decorated flags to the Bloch complex, we prove that any generic component of ℒ K ( M) is K2-isotropic as long as ∂ M satisfies certain topological constraints (theorem 4.2). In some cases this easily implies that ℒ K ( M) is K2-Lagrangian. For general M, we extend a classic result of Neumann and Zagier on symplectic properties of PGL(2) gluing equations to reduce the K2-Lagrangian property to a combinatorial statement.

  11. Automatic removal of cosmic ray signatures in Deep Impact images

    NASA Astrophysics Data System (ADS)

    Ipatov, S. I.; A'Hearn, M. F.; Klaasen, K. P.

    The results of recognition of cosmic ray (CR) signatures on single images made during the Deep Impact mission were analyzed for several codes written by several authors. For automatic removal of CR signatures on many images, we suggest using the code imgclean ( http://pdssbn.astro.umd.edu/volume/didoc_0001/document/calibration_software/dical_v5/) written by E. Deutsch as other codes considered do not work properly automatically with a large number of images and do not run to completion for some images; however, other codes can be better for analysis of certain specific images. Sometimes imgclean detects false CR signatures near the edge of a comet nucleus, and it often does not recognize all pixels of long CR signatures. Our code rmcr is the only code among those considered that allows one to work with raw images. For most visual images made during low solar activity at exposure time t > 4 s, the number of clusters of bright pixels on an image per second per sq. cm of CCD was about 2-4, both for dark and normal sky images. At high solar activity, it sometimes exceeded 10. The ratio of the number of CR signatures consisting of n pixels obtained at high solar activity to that at low solar activity was greater for greater n. The number of clusters detected as CR signatures on a single infrared image is by at least a factor of several greater than the actual number of CR signatures; the number of clusters based on analysis of two successive dark infrared frames is in agreement with an expected number of CR signatures. Some glitches of false CR signatures include bright pixels repeatedly present on different infrared images. Our interactive code imr allows a user to choose the regions on a considered image where glitches detected by imgclean as CR signatures are ignored. In other regions chosen by the user, the brightness of some pixels is replaced by the local median brightness if the brightness of these pixels is greater by some factor than the median brightness. The

  12. Kinematic signature of a rotating bar near a resonance

    NASA Technical Reports Server (NTRS)

    Weinberg, Martin D.

    1994-01-01

    Recent work based on H I, star count and emission data suggests that the Milky Way has rotating bar-like features. In this paper, I show that such features cause distinctive stellar kinematic signatures near Outer Lindblad Resonance (OLR) and Inner Lindblad Resonance (ILR). The effect of these resonances may be observable far from the peak density of the pattern and relatively nearby the solar position. The details of the kinematic signatures depend on the evolutionary history of the 'bar' and therefore velocity data, both systematic and velocity dispersion, may be used to probe the evolutionary history as well as the present state of Galaxy. Kinematic models for a variety of sample scenarios are presented. Models with evolving pattern speeds show significantly stronger dispersion signatures than those with static pattern speeds, suggesting that useful observational constraints are possible. The models are applied to the proposed rotating spheroid and bar models; we find (1) none of these models chosen to represent the proposed large-scale rotating spheroid are consistent with the stellar kinematics and (2) a Galactic bar with semimajor axis of 3 kpc will cause a large increase in velocity dispersion in the vicinity of OLR (approximately 5 kpc) with little change in the net radial motion and such a signature is suggested by K-giant velocity data. Potential future observations and analyses are discussed.

  13. Electronic Signature Policy

    EPA Pesticide Factsheets

    Establishes the United States Environmental Protection Agency's approach to adopting electronic signature technology and best practices to ensure electronic signatures applied to official Agency documents are legally valid and enforceable

  14. Dynamic thermal signature prediction for real-time scene generation

    NASA Astrophysics Data System (ADS)

    Christie, Chad L.; Gouthas, Efthimios (Themie); Williams, Owen M.; Swierkowski, Leszek

    2013-05-01

    At DSTO, a real-time scene generation framework, VIRSuite, has been developed in recent years, within which trials data are predominantly used for modelling the radiometric properties of the simulated objects. Since in many cases the data are insufficient, a physics-based simulator capable of predicting the infrared signatures of objects and their backgrounds has been developed as a new VIRSuite module. It includes transient heat conduction within the materials, and boundary conditions that take into account the heat fluxes due to solar radiation, wind convection and radiative transfer. In this paper, an overview is presented, covering both the steady-state and transient performance.

  15. Final report on APMP.T-K7 key comparison of water triple point cells

    NASA Astrophysics Data System (ADS)

    Tsai, S. F.; White, R.; Tamba, J.; Yamazawa, K.; Ho, M. K.; Tsui, C. M.; Zaid, G.; Achmadi, A.; Gam, K. S.; Othman, H.; Ali, N. M.; Yuan, K. H.; Shaochun, Y.; Liedberg, H.; Yaokulbodee, C.

    2016-01-01

    APMP.T-K7, was held from February 2008 to September 2009 to compare the national realizations of the water triple point among eleven NMIs. To reach the objective, each participating laboratory sent a transfer cell to CMS and stated a value for the temperature difference of the transfer cell, relative to the corresponding national standard, representing 273.16 K. CMS (Taiwan) organized the comparison, with the support from co-pilot institutes MSL (New Zealand) and NMIJ (Japan). The other eight participating laboratories included NMIA, SCL, KIM-LIPI, KRISS, NMIM/SIRIM, NMC, NMISA, and NIMT. This report presents the results of the TPW comparison, gives detailed information about the measurements made at the CMS and at the participating laboratories, and aims to link the results of APMP.T-K7 to CCT-K7. The results of this key comparison are also represented in the form of degrees of equivalence for the purposes of the MRA. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCT, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  16. Transgenic expression of Map3k4 rescues T-associated sex reversal (Tas) in mice

    PubMed Central

    Warr, Nick; Siggers, Pam; Carré, Gwenn-Aël; Bogani, Debora; Brixey, Rachel; Akiyoshi, Mika; Tachibana, Makoto; Teboul, Lydia; Wells, Sara; Sanderson, Jeremy; Greenfield, Andy

    2014-01-01

    Disorders of sex development in the human population range in severity from mild genital defects to gonadal sex reversal. XY female development has been associated with heterozygous mutations in several genes, including SOX9, WT1 and MAP3K1. In contrast, XY sex reversal in mice usually requires complete absence of testis-determining gene products. One exception to this involves T-associated sex reversal (Tas), a phenomenon characterized by the formation of ovotestes or ovaries in XY mice hemizygous for the hairpin-tail (Thp) or T-Orleans (TOrl) deletions on proximal mouse chromosome 17. We recently reported that mice heterozygous for a null allele of Map3k4, which resides in the Thp deletion, exhibit XY ovotestis development and occasional gonadal sex reversal on the sensitized C57BL/6J-YAKR (B6-YAKR) genetic background, reminiscent of the Tas phenotype. However, these experiments did not exclude the possibility that loss of other loci in the Thp deletion, or other effects of the deletion itself, might contribute to Tas. Here, we show that disruption to Sry expression underlies XY gonadal defects in B6-YAKR embryos harbouring the Thp deletion and that a functional Map3k4 bacterial artificial chromosome rescues these abnormalities by re-establishing a normal Sry expression profile. These data demonstrate that Map3k4 haploinsufficiency is the cause of T-associated sex reversal and that levels of this signalling molecule are a major determinant of the expression profile of Sry. PMID:24452333

  17. A Low-mass Exoplanet Candidate Detected by K2 Transiting the Praesepe M Dwarf JS 183

    NASA Astrophysics Data System (ADS)

    Pepper, Joshua; Gillen, Ed; Parviainen, Hannu; Hillenbrand, Lynne A.; Cody, Ann Marie; Aigrain, Suzanne; Stauffer, John; Vrba, Frederick J.; David, Trevor; Lillo-Box, Jorge; Stassun, Keivan G.; Conroy, Kyle E.; Pope, Benjamin J. S.; Barrado, David

    2017-04-01

    We report the discovery of a repeating photometric signal from a low-mass member of the Praesepe open cluster that we interpret as a Neptune-sized transiting planet. The star is JS 183 (HSHJ 163, EPIC 211916756), with T eff = 3325 ± 100 K, M * = 0.44 ± 0.04 M ⊙, R * = 0.44 ± 0.03 R ⊙, and {log}{g}* = 4.82+/- 0.06. The planet has an orbital period of 10.134588 days and a radius of R P = 0.32 ± 0.02 R J. Since the star is faint at V = 16.5 and J = 13.3, we are unable to obtain a measured radial velocity orbit, but we can constrain the companion mass to below about 1.7 M J, and thus well below the planetary boundary. JS 183b (since designated as K2-95b) is the second transiting planet found with K2 that resides in a several-hundred-megayear open cluster; both planets orbit mid-M dwarf stars and are approximately Neptune sized. With a well-determined stellar density from the planetary transit, and with an independently known metallicity from its cluster membership, JS 183 provides a particularly valuable test of stellar models at the fully convective boundary. We find that JS 183 is the lowest-density transit host known at the fully convective boundary, and that its very low density is consistent with current models of stars just above the fully convective boundary but in tension with the models just below the fully convective boundary.

  18. An archaeal genomic signature

    NASA Technical Reports Server (NTRS)

    Graham, D. E.; Overbeek, R.; Olsen, G. J.; Woese, C. R.

    2000-01-01

    Comparisons of complete genome sequences allow the most objective and comprehensive descriptions possible of a lineage's evolution. This communication uses the completed genomes from four major euryarchaeal taxa to define a genomic signature for the Euryarchaeota and, by extension, the Archaea as a whole. The signature is defined in terms of the set of protein-encoding genes found in at least two diverse members of the euryarchaeal taxa that function uniquely within the Archaea; most signature proteins have no recognizable bacterial or eukaryal homologs. By this definition, 351 clusters of signature proteins have been identified. Functions of most proteins in this signature set are currently unknown. At least 70% of the clusters that contain proteins from all the euryarchaeal genomes also have crenarchaeal homologs. This conservative set, which appears refractory to horizontal gene transfer to the Bacteria or the Eukarya, would seem to reflect the significant innovations that were unique and fundamental to the archaeal "design fabric." Genomic protein signature analysis methods may be extended to characterize the evolution of any phylogenetically defined lineage. The complete set of protein clusters for the archaeal genomic signature is presented as supplementary material (see the PNAS web site, www.pnas.org).

  19. K-theoretic aspects of string theory dualities

    NASA Astrophysics Data System (ADS)

    Mendez-Diez, Stefan Milo

    String theory is a a physical field theory in which point particles are replaced by 1-manifolds propagating in time, called strings. The 2-manifold representing the time evolution of a string is called the string worldsheet. Strings can be either closed (meaning their worldsheets are closed surfaces) or open (meaning their worldsheets have boundary). A D-brane is a submanifold of the spacetime manifold on which string endpoints are constrained to lie. There are five different string theories that have supersymmetry, and they are all related by various dualities. This dissertation will review how D-branes are classified by K-theory. We will then explore the K-theoretic aspects of a hypothesized duality between the type I theory compactified on a 4-torus and the type IIA theory compactified on a K3 surface, by looking at a certain blow down of the singular limit of K3. This dissertation concludes by classifying D-branes on the type II orientifold Tn/Z2 when the Z2 action is multiplication by -1 and the H-flux is trivial. We find that classifying D-branes on the singular limit of K3, T4/Z2 by equivariant K-theory agrees with the classification of D-branes on a smooth K3 surface by ordinary K-theory.

  20. A Specific Mutational Signature Associated with DNA 8-Oxoguanine Persistence in MUTYH-defective Colorectal Cancer

    DOE PAGES

    Viel, Alessandra; Bruselles, Alessandro; Meccia, Ettore; ...

    2017-04-13

    8-Oxoguanine, a common mutagenic DNA lesion, generates G:C > T:A transversions via mispairing with adenine during DNA replication. When operating normally, the MUTYH DNA glycosylase prevents 8-oxoguanine-related mutagenesis by excising the incorporated adenine. Biallelic MUTYH mutations impair this enzymatic function and are associated with colorectal cancer (CRC) in MUTYH-Associated Polyposis (MAP) syndrome. Here in this paper, we perform whole-exome sequencing that reveals a modest mutator phenotype in MAP CRCs compared to sporadic CRC stem cell lines or bulk tumours. The excess G:C > T:A transversion mutations in MAP CRCs exhibits a novel mutational signature, termed Signature 36, with a strongmore » sequence dependence. The MUTYH mutational signature reflecting persistent 8-oxoG:A mismatches occurs frequently in the APC, KRAS, PIK3CA, FAT4, TP53, FAT1, AMER1, KDM6A, SMAD4 and SMAD2 genes that are associated with CRC. In conclusion, the occurrence of Signature 36 in other types of human cancer indicates that DNA 8-oxoguanine-related mutations might contribute to the development of cancer in other organs.« less

  1. A Specific Mutational Signature Associated with DNA 8-Oxoguanine Persistence in MUTYH-defective Colorectal Cancer

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Viel, Alessandra; Bruselles, Alessandro; Meccia, Ettore

    8-Oxoguanine, a common mutagenic DNA lesion, generates G:C > T:A transversions via mispairing with adenine during DNA replication. When operating normally, the MUTYH DNA glycosylase prevents 8-oxoguanine-related mutagenesis by excising the incorporated adenine. Biallelic MUTYH mutations impair this enzymatic function and are associated with colorectal cancer (CRC) in MUTYH-Associated Polyposis (MAP) syndrome. Here in this paper, we perform whole-exome sequencing that reveals a modest mutator phenotype in MAP CRCs compared to sporadic CRC stem cell lines or bulk tumours. The excess G:C > T:A transversion mutations in MAP CRCs exhibits a novel mutational signature, termed Signature 36, with a strongmore » sequence dependence. The MUTYH mutational signature reflecting persistent 8-oxoG:A mismatches occurs frequently in the APC, KRAS, PIK3CA, FAT4, TP53, FAT1, AMER1, KDM6A, SMAD4 and SMAD2 genes that are associated with CRC. In conclusion, the occurrence of Signature 36 in other types of human cancer indicates that DNA 8-oxoguanine-related mutations might contribute to the development of cancer in other organs.« less

  2. The signatures of acoustic emission waveforms from fatigue crack advancing in thin metallic plates

    NASA Astrophysics Data System (ADS)

    Yeasin Bhuiyan, Md; Giurgiutiu, Victor

    2018-01-01

    The acoustic emission (AE) waveforms from a fatigue crack advancing in a thin metallic plate possess diverse and complex spectral signatures. In this article, we analyze these waveform signatures in coordination with the load level during cyclic fatigue. The advancing fatigue crack may generate numerous AE hits while it grows under fatigue loading. We found that these AE hits can be sorted into various groups based on their AE waveform signatures. Each waveform group has a particular time-domain signal pattern and a specific frequency spectrum. This indicates that each group represents a certain AE event related to the fatigue crack growth behavior. In situ AE-fatigue experiments were conducted to monitor the fatigue crack growth with simultaneous measurement of AE signals, fatigue loading, and optical crack growth measurement. An in situ microscope was installed in the load-frame of the mechanical testing system (MTS) to optically monitor the fatigue crack growth and relate the AE signals with the crack growth measurement. We found the AE signal groups at higher load levels (75%-85% of maximum load) were different from the AE signal groups that happened at lower load levels (below 60% of load level). These AE waveform groups are highly related to the fatigue crack-related AE events. These AE signals mostly contain the higher frequency peaks (100 kHz, 230 kHz, 450 kHz, 550 kHz). Some AE signal groups happened as a clustered form that relates a sequence of small AE events within the fatigue crack. They happened at relatively lower load level (50%-60% of the maximum load). These AE signal groups may be related to crack friction and micro-fracture during the friction process. These AE signals mostly contain the lower frequency peaks (60 kHz, 100 kHz, 200 kHz). The AE waveform based analysis may give us comprehensive information of the metal fatigue.

  3. 1 CFR 18.7 - Signature.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Signature. 18.7 Section 18.7 General Provisions... PREPARATION AND TRANSMITTAL OF DOCUMENTS GENERALLY § 18.7 Signature. The original and each duplicate original... stamped beneath the signature. Initialed or impressed signatures will not be accepted. Documents submitted...

  4. Transitional and turbulent boundary layer with heat transfer

    NASA Astrophysics Data System (ADS)

    Wu, Xiaohua; Moin, Parviz

    2010-08-01

    We report on our direct numerical simulation of an incompressible, nominally zero-pressure-gradient flat-plate boundary layer from momentum thickness Reynolds number 80-1950. Heat transfer between the constant-temperature solid surface and the free-stream is also simulated with molecular Prandtl number Pr=1. Skin-friction coefficient and other boundary layer parameters follow the Blasius solutions prior to the onset of turbulent spots. Throughout the entire flat-plate, the ratio of Stanton number and skin-friction St/Cf deviates from the exact Reynolds analogy value of 0.5 by less than 1.5%. Mean velocity and Reynolds stresses agree with experimental data over an extended turbulent region downstream of transition. Normalized rms wall-pressure fluctuation increases gradually with the streamwise growth of the turbulent boundary layer. Wall shear stress fluctuation, τw,rms'+, on the other hand, remains constant at approximately 0.44 over the range, 800boundary layer edge with no near-wall secondary peak, in good agreement with previous boundary layer heat transfer experiments. In the transitional region, turbulent spots are tightly packed with numerous hairpin vortices. With the advection and merging of turbulent spots, these young isolated hairpin forests develop into the downstream turbulent region. Isosurfaces of temperature up to Reθ=1900 are found to display well-resolved signatures of hairpin vortices, which indicates the persistence of the hairpin forests.

  5. The tumor suppressor SirT2 regulates cell cycle progression and genome stability by modulating the mitotic deposition of H4K20 methylation

    PubMed Central

    Serrano, Lourdes; Martínez-Redondo, Paloma; Marazuela-Duque, Anna; Vazquez, Berta N.; Dooley, Scott J.; Voigt, Philipp; Beck, David B.; Kane-Goldsmith, Noriko; Tong, Qiang; Rabanal, Rosa M.; Fondevila, Dolors; Muñoz, Purificación; Krüger, Marcus; Tischfield, Jay A.; Vaquero, Alejandro

    2013-01-01

    The establishment of the epigenetic mark H4K20me1 (monomethylation of H4K20) by PR-Set7 during G2/M directly impacts S-phase progression and genome stability. However, the mechanisms involved in the regulation of this event are not well understood. Here we show that SirT2 regulates H4K20me1 deposition through the deacetylation of H4K16Ac (acetylation of H4K16) and determines the levels of H4K20me2/3 throughout the cell cycle. SirT2 binds and deacetylates PR-Set7 at K90, modulating its chromatin localization. Consistently, SirT2 depletion significantly reduces PR-Set7 chromatin levels, alters the size and number of PR-Set7 foci, and decreases the overall mitotic deposition of H4K20me1. Upon stress, the interaction between SirT2 and PR-Set7 increases along with the H4K20me1 levels, suggesting a novel mitotic checkpoint mechanism. SirT2 loss in mice induces significant defects associated with defective H4K20me1–3 levels. Accordingly, SirT2-deficient animals exhibit genomic instability and chromosomal aberrations and are prone to tumorigenesis. Our studies suggest that the dynamic cross-talk between the environment and the genome during mitosis determines the fate of the subsequent cell cycle. PMID:23468428

  6. One base pair change abolishes the T cell-restricted activity of a kB-like proto-enhancer element from the interleukin 2 promoter.

    PubMed Central

    Briegel, K; Hentsch, B; Pfeuffer, I; Serfling, E

    1991-01-01

    The inducible, T cell-specific enhancers of murine and human Interleukin 2 (Il-2) genes contain the kB-like sequence GGGATTTCACC as an essential cis-acting enhancer motif. When cloned in multiple copies this so-called TCEd (distal T cell element) acts as an inducible proto-enhancer element in E14 T lymphoma cells, but not in HeLa cells. In extracts of induced, Il-2 secreting El4 cells three individual protein factors bind to TCEd DNA. The binding of the most prominent factor, named TCF-1 (T cell factor 1), is correlated with the proto-enhancer activity of TCEd. TCF-1 consists of two polypeptides of about 50 kD and 105 kD; the former seems to be related to the 50 kD polypeptide of NF-kB. Purified NF-kB is also able to bind to the TCEd, but TCF-1 binds stronger than NF-kB to TCEd DNA. The conversion of the TCEd to a 'perfect' NF-kB binding site leads to a tighter binding of NF-kB to TCEd DNA and, as a functional consequence, to the activity of the 'converted' TCEd motifs in HeLa cells. Thus, the substitution of the underlined A residue to a C within the GGGATTTCACC motif abolishes its T cell-restricted activity and leads to its functioning in both El4 cells and HeLa cells. These results indicate that lymphocyte-specific factors binding to the TCEd are involved in the control of T cell specific-transcription of the Il-2 gene. Images PMID:1945879

  7. Enhanced thermoelectric performance through grain boundary engineering in quaternary chalcogenide Cu2ZnSnSe4

    NASA Astrophysics Data System (ADS)

    Zhu, Yingcai; Liu, Yong; Tan, Xing; Ren, Guangkun; Yu, Meijuan; Hu, Tiandou; Marcelli, Augusto; Xu, Wei

    2018-04-01

    Quaternary chalcogenide Cu2ZnSnSe4 (CZTSe) is a promising wide band-gap p-type thermoelectric material. The structure and thermoelectric properties of lead substituted Cu2ZnSn1-xPbxSe4 are investigated. Lead primarily exists in the framework of PbSe as demonstrated by x-ray diffraction and calculation of x-ray absorption near-edge structure spectroscopy. The second phase distributes at the boundaries of CZTSe with thickness in several hundreds of nanometer. With appropriate grain boundary engineering, the enhancement of power factor and a decrease of thermal conductivity can be achieved simultaneously. As a result, a maximum figure of merit zT of 0.45 is obtained for the sample with x=0.02 at 723K.

  8. Tectono-metamorphic evolution of high-P/T and low-P/T metamorphic rocks in the Tia Complex, southern New England Fold Belt, eastern Australia: Insights from K-Ar chronology

    NASA Astrophysics Data System (ADS)

    Fukui, Shiro; Tsujimori, Tatsuki; Watanabe, Teruo; Itaya, Tetsumaru

    2012-10-01

    The Tia Complex in the southern New England Fold Belt is a poly-metamorphosed Late Paleozoic accretionary complex. It consists mainly of high-P/low-T type pumpellyite-actinolite facies (rare blueschist facies) schists, phyllite and serpentinite (T = 300 °C and P = 5 kbar), and low-P/high-T type amphibolite facies schist and gneiss (T = 600 °C and P < 5 kbar) associated with granodioritic plutons (Tia granodiorite). White mica and biotite K-Ar ages distinguish Carboniferous subduction zone metamorphism and Permian granitic intrusions, respectively. The systematic K-Ar age mapping along a N-S traverse of the Tia Complex exhibits a gradual change. The white mica ages become younger from the lowest-grade zone (339 Ma) to the highest-grade zone (259 Ma). In contrast, Si content of muscovite changes drastically only in the highest-grade zone. The regional changes of white mica K-Ar ages and chemical compositions of micas indicate argon depletion from precursor high-P/low-T type phengitic white mica during the thermal overprinting and recrystallization by granitoids intrusions. Our new K-Ar ages and available geological data postulate a model of the eastward rollback of a subduction zone in Early Permian. The eastward shift of a subduction zone system and subsequent magmatic activities of high-Mg andesite and adakite might explain formation of S-type granitoids (Hillgrove suite) and coeval low-P/high-T type metamorphism in the Tia Complex.

  9. The Solar Wind-Mars Interaction Boundaries in Three Dimensions

    NASA Astrophysics Data System (ADS)

    Gruesbeck, J.; Espley, J. R.; Connerney, J. E. P.; DiBraccio, G. A.; Soobiah, Y. I. J.

    2017-12-01

    The Martian magnetosphere is a product of the interaction of Mars with the interplanetary magnetic field and the supersonic solar wind. A bow shock forms upstream of the planet as the solar wind is diverted around the planet. Closer to the planet another boundary is located that separates the shock-heated solar wind plasma from the planetary plasma in the Martian magnetosphere. The Martian magnetosphere is induced by the pile-up of the interplanetary magnetic field. This induced magnetospheric boundary (IMB) has been referred to by different names, in part due to the observations available at the time. The location of these boundaries have been previously analyzed using data from Phobos 2, Mars Global Surveyor, and Mars Express resulting in models describing their average shapes. Observations of individual transitions demonstrate that it is a boundary with a finite thickness. The MAVEN spacecraft has been in orbit about Mars since November 2014 resulting in many encounters of the spacecraft with the boundaries. Using data from the Particle and Fields Package (PFP), we identify over 1000 bow shock crossings and over 4000 IMB crossings that we use to model the average locations. We model the boundaries as a 3-dimensional surface allowing observations of asymmetry. The average location of the bow shock and IMB lies further from the planet in the southern hemisphere, where stronger crustal fields are present. The MAVEN PFP dataset allows concurrent observations of the magnetic field and plasma environment to investigate the nature of the IMB and the relationship of the boundary to the different plasma signatures. Finally, we model the upstream and downstream encounters of the boundaries separately to produce shell models that quantify the finite thicknesses of the boundaries.

  10. Articulatory Placement for /t/, /d/, /k/ and /g/ Targets in School Age Children with Speech Disorders Associated with Cleft Palate

    ERIC Educational Resources Information Center

    Gibbon, Fiona; Ellis, Lucy; Crampin, Lisa

    2004-01-01

    This study used electropalatography (EPG) to identify place of articulation for lingual plosive targets /t/, /d/, /k/ and /g/ in the speech of 15 school age children with repaired cleft palate. Perceptual judgements indicated that all children had correct velar placement for /k/, /g/ targets, but /t/, /d/ targets were produced as errors involving…

  11. Simulating realistic predator signatures in quantitative fatty acid signature analysis

    USGS Publications Warehouse

    Bromaghin, Jeffrey F.

    2015-01-01

    Diet estimation is an important field within quantitative ecology, providing critical insights into many aspects of ecology and community dynamics. Quantitative fatty acid signature analysis (QFASA) is a prominent method of diet estimation, particularly for marine mammal and bird species. Investigators using QFASA commonly use computer simulation to evaluate statistical characteristics of diet estimators for the populations they study. Similar computer simulations have been used to explore and compare the performance of different variations of the original QFASA diet estimator. In both cases, computer simulations involve bootstrap sampling prey signature data to construct pseudo-predator signatures with known properties. However, bootstrap sample sizes have been selected arbitrarily and pseudo-predator signatures therefore may not have realistic properties. I develop an algorithm to objectively establish bootstrap sample sizes that generates pseudo-predator signatures with realistic properties, thereby enhancing the utility of computer simulation for assessing QFASA estimator performance. The algorithm also appears to be computationally efficient, resulting in bootstrap sample sizes that are smaller than those commonly used. I illustrate the algorithm with an example using data from Chukchi Sea polar bears (Ursus maritimus) and their marine mammal prey. The concepts underlying the approach may have value in other areas of quantitative ecology in which bootstrap samples are post-processed prior to their use.

  12. Prognostic Power of a Tumor Differentiation Gene Signature for Bladder Urothelial Carcinomas.

    PubMed

    Mo, Qianxing; Nikolos, Fotis; Chen, Fengju; Tramel, Zoe; Lee, Yu-Cheng; Hayashi, Kazukuni; Xiao, Jing; Shen, Jianjun; Chan, Keith Syson

    2018-05-01

    Muscle-invasive bladder cancers (MIBCs) cause approximately 150 000 deaths per year worldwide. Survival for MIBC patients is heterogeneous, with no clinically validated molecular markers that predict clinical outcome. Non-MIBCs (NMIBCs) generally have favorable outcome; however, a portion progress to MIBC. Hence, development of a prognostic tool that can guide decision-making is crucial for improving clinical management of bladder urothelial carcinomas. Tumor grade is defined by pathologic evaluation of tumor cell differentiation, and it often associates with clinical outcome. The current study extrapolates this conventional wisdom and combines it with molecular profiling. We developed an 18-gene signature that molecularly defines urothelial cellular differentiation, thus classifying MIBCs and NMIBCs into two subgroups: basal and differentiated. We evaluated the prognostic capability of this "tumor differentiation signature" and three other existing gene signatures including the The Cancer Genome Atlas (TCGA; 2707 genes), MD Anderson Cancer Center (MDA; 2252 genes/2697 probes), and University of North Carolina at Chapel Hill (UNC; 47 genes) using five gene expression data sets derived from MIBC and NMIBC patients. All statistical tests were two-sided. The tumor differentiation signature demonstrated consistency and statistical robustness toward stratifying MIBC patients into different overall survival outcomes (TCGA cohort 1, P = .03; MDA discovery, P = .009; MDA validation, P = .01), while the other signatures were not as consistent. In addition, we analyzed the progression (Ta/T1 progressing to ≥T2) probability of NMIBCs. NMIBC patients with a basal tumor differentiation signature associated with worse progression outcome (P = .008). Gene functional term enrichment and gene set enrichment analyses revealed that genes involved in the biologic process of immune response and inflammatory response are among the most elevated within basal bladder cancers

  13. Five Guidelines for Selecting Hydrological Signatures

    NASA Astrophysics Data System (ADS)

    McMillan, H. K.; Westerberg, I.; Branger, F.

    2017-12-01

    Hydrological signatures are index values derived from observed or modeled series of hydrological data such as rainfall, flow or soil moisture. They are designed to extract relevant information about hydrological behavior, such as to identify dominant processes, and to determine the strength, speed and spatiotemporal variability of the rainfall-runoff response. Hydrological signatures play an important role in model evaluation. They allow us to test whether particular model structures or parameter sets accurately reproduce the runoff generation processes within the watershed of interest. Most modeling studies use a selection of different signatures to capture different aspects of the catchment response, for example evaluating overall flow distribution as well as high and low flow extremes and flow timing. Such studies often choose their own set of signatures, or may borrow subsets of signatures used in multiple other works. The link between signature values and hydrological processes is not always straightforward, leading to uncertainty and variability in hydrologists' signature choices. In this presentation, we aim to encourage a more rigorous approach to hydrological signature selection, which considers the ability of signatures to represent hydrological behavior and underlying processes for the catchment and application in question. To this end, we propose a set of guidelines for selecting hydrological signatures. We describe five criteria that any hydrological signature should conform to: Identifiability, Robustness, Consistency, Representativeness, and Discriminatory Power. We describe an example of the design process for a signature, assessing possible signature designs against the guidelines above. Due to their ubiquity, we chose a signature related to the Flow Duration Curve, selecting the FDC mid-section slope as a proposed signature to quantify catchment overall behavior and flashiness. We demonstrate how assessment against each guideline could be used to

  14. Signatures of tumour immunity distinguish Asian and non-Asian gastric adenocarcinomas

    PubMed Central

    Lin, Suling J; Gagnon-Bartsch, Johann A; Tan, Iain Beehuat; Earle, Sophie; Ruff, Louise; Pettinger, Katherine; Ylstra, Bauke; van Grieken, Nicole; Rha, Sun Young; Chung, Hyun Cheol; Lee, Ju-Seog; Cheong, Jae Ho; Noh, Sung Hoon; Aoyama, Toru; Miyagi, Yohei; Tsuburaya, Akira; Yoshikawa, Takaki; Ajani, Jaffer A; Boussioutas, Alex; Yeoh, Khay Guan; Yong, Wei Peng; So, Jimmy; Lee, Jeeyun; Kang, Won Ki; Kim, Sung; Kameda, Yoichi; Arai, Tomio; zur Hausen, Axel; Speed, Terence P; Grabsch, Heike I; Tan, Patrick

    2015-01-01

    Objective Differences in gastric cancer (GC) clinical outcomes between patients in Asian and non-Asian countries has been historically attributed to variability in clinical management. However, recent international Phase III trials suggest that even with standardised treatments, GC outcomes differ by geography. Here, we investigated gene expression differences between Asian and non-Asian GCs, and if these molecular differences might influence clinical outcome. Design We compared gene expression profiles of 1016 GCs from six Asian and three non-Asian GC cohorts, using a two-stage meta-analysis design and a novel biostatistical method (RUV-4) to adjust for technical variation between cohorts. We further validated our findings by computerised immunohistochemical analysis on two independent tissue microarray (TMA) cohorts from Asian and non-Asian localities (n=665). Results Gene signatures differentially expressed between Asians and non-Asian GCs were related to immune function and inflammation. Non-Asian GCs were significantly enriched in signatures related to T-cell biology, including CTLA-4 signalling. Similarly, in the TMA cohorts, non-Asian GCs showed significantly higher expression of T-cell markers (CD3, CD45R0, CD8) and lower expression of the immunosuppressive T-regulatory cell marker FOXP3 compared to Asian GCs (p<0.05). Inflammatory cell markers CD66b and CD68 also exhibited significant cohort differences (p<0.05). Exploratory analyses revealed a significant relationship between tumour immunity factors, geographic locality-specific prognosis, and postchemotherapy outcomes. Conclusions Analyses of >1600 GCs suggest that Asian and non-Asian GCs exhibit distinct tumour immunity signatures related to T-cell function. These differences may influence geographical differences in clinical outcome, and the design of future trials particularly in immuno-oncology. PMID:25385008

  15. Signatures of tumour immunity distinguish Asian and non-Asian gastric adenocarcinomas.

    PubMed

    Lin, Suling J; Gagnon-Bartsch, Johann A; Tan, Iain Beehuat; Earle, Sophie; Ruff, Louise; Pettinger, Katherine; Ylstra, Bauke; van Grieken, Nicole; Rha, Sun Young; Chung, Hyun Cheol; Lee, Ju-Seog; Cheong, Jae Ho; Noh, Sung Hoon; Aoyama, Toru; Miyagi, Yohei; Tsuburaya, Akira; Yoshikawa, Takaki; Ajani, Jaffer A; Boussioutas, Alex; Yeoh, Khay Guan; Yong, Wei Peng; So, Jimmy; Lee, Jeeyun; Kang, Won Ki; Kim, Sung; Kameda, Yoichi; Arai, Tomio; Zur Hausen, Axel; Speed, Terence P; Grabsch, Heike I; Tan, Patrick

    2015-11-01

    Differences in gastric cancer (GC) clinical outcomes between patients in Asian and non-Asian countries has been historically attributed to variability in clinical management. However, recent international Phase III trials suggest that even with standardised treatments, GC outcomes differ by geography. Here, we investigated gene expression differences between Asian and non-Asian GCs, and if these molecular differences might influence clinical outcome. We compared gene expression profiles of 1016 GCs from six Asian and three non-Asian GC cohorts, using a two-stage meta-analysis design and a novel biostatistical method (RUV-4) to adjust for technical variation between cohorts. We further validated our findings by computerised immunohistochemical analysis on two independent tissue microarray (TMA) cohorts from Asian and non-Asian localities (n=665). Gene signatures differentially expressed between Asians and non-Asian GCs were related to immune function and inflammation. Non-Asian GCs were significantly enriched in signatures related to T-cell biology, including CTLA-4 signalling. Similarly, in the TMA cohorts, non-Asian GCs showed significantly higher expression of T-cell markers (CD3, CD45R0, CD8) and lower expression of the immunosuppressive T-regulatory cell marker FOXP3 compared to Asian GCs (p<0.05). Inflammatory cell markers CD66b and CD68 also exhibited significant cohort differences (p<0.05). Exploratory analyses revealed a significant relationship between tumour immunity factors, geographic locality-specific prognosis, and postchemotherapy outcomes. Analyses of >1600 GCs suggest that Asian and non-Asian GCs exhibit distinct tumour immunity signatures related to T-cell function. These differences may influence geographical differences in clinical outcome, and the design of future trials particularly in immuno-oncology. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

  16. Observations of ionospheric convection vortices - Signatures of momentum transfer

    NASA Technical Reports Server (NTRS)

    Mchenry, M. A.; Clauer, C. R.; Friis-Christensen, E.; Kelly, J. D.

    1988-01-01

    Several classes of traveling vortices in the dayside ionospheric flow have been detected and tracked using the Greenland magnetometer chain. One class observed during quiet times consists of a continuous series of vortices moving generally antisunward for several hours at a time. Assuming each vortex to be the convection pattern produced by a small field aligned current moving across the ionosphere, the amount of field aligned current was found by fitting a modeled ground magnetic signature to measurements from the chain of magnetometers. The calculated field aligned current is seen to be steady for each vortex and neighboring vortices have currents of opposite sign. Low altitude DMSP observations indicate the vortices are on field lines which map to the inner edge of the low latitude boundary layer. Because the vortices are conjugate to the boundary layer, repeat in a regular fashion and travel antisunward, it is argued that this class of vortices is caused by surface waves at the magnetopause. No strong correlations between field aligned current strength and solar wind density, velocity, or Bz is found.

  17. Molecular Diagnostics of Diffusive Boundary Layers

    NASA Astrophysics Data System (ADS)

    Rawlings, J. M. C.; Hartquist, T. W.

    1997-10-01

    We have examined the chemistry in thin (<~0.01 pc) boundary layers between dark star-forming cores and warm, shocked T Tauri winds on the assumption that turbulence-driven diffusion occurs within them. The results indicate that emissions from C+, CH, OH, H2O and the J = 6 --> 5 transition of CO, among others, may serve as diagnostics of the boundary layers.

  18. Potassium channel KCNH2 K897T polymorphism and cardiac repolarization during exercise test: The Finnish Cardiovascular Study.

    PubMed

    Koskela, J; Laiho, J; KäHönen, M; Rontu, R; Lehtinen, R; Viik, J; Niemi, M; Niemelä, K; Kööbi, T; Turjanmaa, V; Pörsti, I; Lehtimäki, T; Nieminen, T

    2008-01-01

    Cardiac repolarization is regulated, in part, by the KCNH2 gene, which encodes a rapidly activating component of the delayed rectifier potassium channel. The gene expresses a functional single nucleotide polymorphism, K897T, which changes the biophysical properties of the channel. The objective of this study was to evaluate whether this polymorphism influences two indices of repolarization--the QT interval and T-wave alternans (TWA)--during different phases of a physical exercise test. The cohort consisted of 1,975 patients undergoing an exercise test during which on-line electrocardiographic data were registered. Information on coronary risk factors and medication was recorded. The 2690A>C nucleotide variation in the KCNH2 gene corresponding to the K897T amino acid change was analysed after polymerase chain reaction with allele-specific TaqMan probes. Among all subjects, the QTc intervals did not differ between the three genotype groups (p> or =0.31, RANOVA). Women with the CC genotype tended to have longer QT intervals during the exercise test, but the difference was statistically significant only at rest (p = 0.011, ANOVA). This difference was also detected when the analysis was adjusted for several factors influencing the QT interval. No statistically significant effects of the K897T polymorphism on TWA were observed among all subjects (p = 0.16, RANOVA), nor in men and women separately. The K897T polymorphism of the KCNH2 gene may not be a major genetic determinant for the TWA, but the influence of the CC genotype on QT interval deserves further research among women.

  19. Signatures of Hot Molecular Hydrogen Absorption from Protoplanetary Disks. I. Non-thermal Populations

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hoadley, Keri; France, Kevin; Arulanantham, Nicole

    2017-09-01

    The environment around protoplanetary disks (PPDs) regulates processes that drive the chemical and structural evolution of circumstellar material. We perform a detailed empirical survey of warm molecular hydrogen (H{sub 2}) absorption observed against H i-Ly α (Ly α : λ 1215.67) emission profiles for 22 PPDs, using archival Hubble Space Telescope ultraviolet (UV) spectra to identify H{sub 2} absorption signatures and quantify the column densities of H{sub 2} ground states in each sightline. We compare thermal equilibrium models of H{sub 2} to the observed H{sub 2} rovibrational level distributions. We find that, for the majority of targets, there is amore » clear deviation in high-energy states ( T {sub exc} ≳ 20,000 K) away from thermal equilibrium populations ( T (H{sub 2}) ≳ 3500 K). We create a metric to estimate the total column density of non-thermal H{sub 2} ( N (H{sub 2}){sub nLTE}) and find that the total column densities of thermal ( N (H{sub 2})) and N (H{sub 2}){sub nLTE} correlate for transition disks and targets with detectable C iv-pumped H{sub 2} fluorescence. We compare N (H{sub 2}) and N (H{sub 2}){sub nLTE} to circumstellar observables and find that N (H{sub 2}){sub nLTE} correlates with X-ray and far-UV luminosities, but no correlations are observed with the luminosities of discrete emission features (e.g., Ly α , C iv). Additionally, N (H{sub 2}) and N (H{sub 2}){sub nLTE} are too low to account for the H{sub 2} fluorescence observed in PPDs, so we speculate that this H{sub 2} may instead be associated with a diffuse, hot, atomic halo surrounding the planet-forming disk. We create a simple photon-pumping model for each target to test this hypothesis and find that Ly α efficiently pumps H{sub 2} levels with T {sub exc} ≥ 10,000 K out of thermal equilibrium.« less

  20. Characterization and discrimination of large caliber gun blast and flash signatures

    NASA Astrophysics Data System (ADS)

    Steward, Bryan J.; Gross, Kevin C.; Perram, Glen P.

    2012-06-01

    Two hundred and one firings of three 152 mm howitzer munitions were observed to characterize firing signatures of a large caliber gun. Muzzle blast expansion was observed with high-speed (1600 Hz) optical imagery. The trajectory of the blast front was well approximated by a modified point-blast model described by constant rate of energy deposition. Visible and near-infrared (450 - 850 nm) spectra of secondary combustion were acquired at ~0.75 nm spectral resolution and depict strong contaminant emissions including Li, Na, K, Cu, and Ca. The O2 (X-->b) absorption band is evident in the blue wing of the potassium D lines and was used for monocular passive ranging accurate to within 4 - 9%. Timeresolved midwave infrared (1800 - 6000 cm-1) spectra were collected at 100 Hz and 32 cm-1 resolution. A low dimensional radiative transfer model was used to characterize plume emissions in terms of area, temperature, soot emissivity, and species concentrations. Combustion emissions have ~100 ms duration, 1200 - 1600 K temperature, and are dominated by H2O and CO2. Non-combusting plume emissions last ~20 ms, are 850 - 1050 K, and show significant continuum (emissivity ~0.36) and CO structure. Munitions were discriminated with 92 - 96% classification accuracy using only 1 - 3 firing signature features.

  1. The Chicxulub impact at the K-Pg boundary - search for traces of the projectile

    NASA Astrophysics Data System (ADS)

    Deutsch, A.

    2012-04-01

    One of the most interesting problems in the context of the end-Cretaceous Chicxulub impact is the question after the whererabouts of the main mass of the projectile. The nature of this >10 km-sized Chicxulub projectile was constrained by an anomaly in the chromium isotope 54 in the K-Pg deposit at Stevens Klint, Denmark, to a carbonaceous chondrite of type CM2 [1]. About 1.5 % of the estimated mass of the projectile has been detected world-wide in the K-Pg boundary layer; mainly in the form of platinum group elements (PGE) as well as other siderophile elements (Ni, Co ... ). A contamination by or even a major contribution of other "projectile" elements to the K-Pg event bed was rarely proposed. The few examples in the literature (cf. compilation in [2, 3]) used rare earth elements (REE) distribution patterns that are slightly inconsistent with REE patterns typical for the upper continental crust (UCC). Ejecta consisting of UCC target rocks is expected to form the overwhelming mass of the ejecta. In most K-Pg layers, however, the ejecta is diluted or even totally masked by a component of more local origin and with features of high-energy deposition mechanisms. Numerical models [4] indicate a deposition of >500km3 projectile material, corresponding to >2 x 10exp9 tons of mainly silica, iron, and magnesium in the K-Pg event bed. Detecting the "meteoritic" origin of these major elements, however, in a matrix of siliceous detritus, is practically impossible. Recent LA-ICP-MS analyses show that siliceous impact spherules - hydrated glass or altered to chlorite - in the Chicxulub event bed at various locations (e.g., Shell Creek, La Lajilla, La Popa) have REE patterns that are flat and un-fractionated, corresponding quite well to a typical CI-pattern. The REE abundances are chondritic to sub-chondritic. Mixing calculations indicate that the maximum REE contribution of UCC material to the REE budget of these spherules is on the order of 2 %, but usually much less. These

  2. The Permian-Triassic boundary & mass extinction in China

    USGS Publications Warehouse

    Metcalfe, I.; Nicoll, R.S.; Mundil, R.; Foster, C.; Glen, J.; Lyons, J.; Xiaofeng, W.; Cheng-Yuan, W.; Renne, P.R.; Black, L.; Xun, Q.; Xiaodong, M.

    2001-01-01

    The first appearance of Hindeodus parvus (Kozur & Pjatakova) at the Permian-Triassic (P-T) GSSP level (base of Bed 27c) at Meishan is here confirmed. Hindeodus changxingensis Wang occurs from Beds 26 to 29 at Meishan and appears to be restricted to the narrow boundary interval immediately above the main mass extinction level in Bed 25. It is suggested that this species is therefore a valuable P-T boundary interval index taxon. Our collections from the Shangsi section confirm that the first occurrence of Hindeodus parvus in that section is about 5 in above the highest level from which a typical Permian fauna is recovered. This may suggest that that some section may be missing at Meishan. The age of the currently defined Permian-Triassic Boundary is estimated by our own studies and a reassessment of previous worker's data at c. 253 Ma, slightly older than our IDTIMS 206Pb/238U age of 252.5 ??0.3 Ma for Bed 28, just 8 cm above the GSSP boundary (Mundil et al., 2001). The age of the main mass extinction, at the base of Bed 25 at Meishan, is estimated at slightly older than 254 Ma based on an age of >254 Ma for the Bed 25 ash. Regardless of the absolute age of the boundary, it is evident that the claimed <165,000 y short duration for the negative carbon isotope excursion at the P-T boundary (Bowring et al., 1998) cannot be confirmed. Purportedly extraterrestrial fullerenes at the boundary (Hecker et al., 2001) have equivocal significance due to their chronostratigraphic non-uniqueness and their occurrence in a volcanic ash.

  3. T-cell epitope analysis using subtracted expression libraries (TEASEL): application to a 38-kDA autoantigen recognized by T cells from an insulin-dependent diabetic patient.

    PubMed Central

    Neophytou, P I; Roep, B O; Arden, S D; Muir, E M; Duinkerken, G; Kallan, A; de Vries, R R; Hutton, J C

    1996-01-01

    Studies on circulating T cells and antibodies in newly diagnosed type 1 diabetic patients and rodent models of autoimmune diabetes suggest that beta-cell membrane proteins of 38 kDa may be important molecular targets of autoimmune attack. Biochemical approaches to the isolation and identification of the 38-kDa autoantigen have been hampered by the restricted availability of islet tissue and the low abundance of the protein. A procedure of epitope analysis for CD4+ T cells using subtracted expression libraries (TEASEL) was developed and used to clone a 70-amino acid pancreatic beta-cell peptide incorporating an epitope recognized by a 38-kDa-reactive CD4+ T-cell clone (1C6) isolated from a human diabetic patient. The minimal epitope was mapped to a 10-amino acid synthetic peptide containing a DR1 consensus binding motif. Data base searches did not reveal the identity of the protein, though a weak homology to the bacterial superantigens SEA (Streptococcus pyogenes exotoxin A) and SEB (Staphylococcus aureus enterotoxin B) (23% identity) was evident. The TEASEL procedure might be used to identify epitopes of other autoantigens recognized by CD4+ T cells in diabetes as well as be more generally applicable to the study low-abundance autoantigens in other tissue-specific autoimmune diseases. PMID:8700877

  4. Electrode and grain-boundary effects on the conductivity of CaCu{sub 3}Ti{sub 4}O{sub 12}

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Zhang Lei

    2005-07-11

    The ac conductivity of CaCu{sub 3}Ti{sub 4}O{sub 12} (CCTO) ceramics was studied in the temperature range 173<T<443 K. The dc conductivities containing the components of electrodes ({sigma}{sub e}) and grain boundaries ({sigma}{sub gb}) were measured, from which a thermal activation energies of {approx}0.54 eV was inferred. Different behaviors of dielectric relaxations are responsible for the two contributing components.

  5. Recent Results from the T2K Experiment

    NASA Astrophysics Data System (ADS)

    Abe, K.; Abgrall, N.; Aihara, H.; Akiri, T.; Andreopoulos, C.; Aoki, S.; Ariga, A.; Ariga, T.; Assylbekov, S.; Autiero, D.; Barbi, M.; Barker, G. J.; Barr, G.; Bass, M.; Batkiewicz, M.; Bay, F.; Bentham, S. W.; Berardi, V.; Berger, B. E.; Berkman, S.; Bertram, I.; Bhadra, S.; Blaszczyk, F. D. M.; Blondel, A.; Bojechko, C.; Boyd, S. B.; Brailsford, D.; Bravar, A.; Bronner, C.; Buchanan, N.; Calland, R. G.; Caravaca Rodríguez, J.; Cartwright, S. L.; Castillo, R.; Catanesi, M. G.; Cervera, A.; Cherdack, D.; Christodoulou, G.; Clifton, A.; Coleman, J.; Coleman, S. J.; Collazuol, G.; Connolly, K.; Cremonesi, L.; Curioni, A.; Dabrowska, A.; Danko, I.; Das, R.; Davis, S.; de Perio, P.; De Rosa, G.; Dealtry, T.; Dennis, S. R.; Densham, C.; Di Lodovico, F.; Di Luise, S.; Drapier, O.; Duboyski, T.; Dufour, F.; Dumarchez, J.; Dytman, S.; Dziewiecki, M.; Emery, S.; Ereditato, A.; Escudero, L.; Finch, A. J.; Frank, E.; Friend, M.; Fujii, Y.; Fukuda, Y.; Furmanski, A. P.; Galymov, V.; Gaudin, A.; Giffin, S.; Giganti, C.; Gilje, K.; Golan, T.; Gomez-Cadenas, J. J.; Gonin, M.; Grant, N.; Gudin, D.; Hadley, D. R.; Haesler, A.; Haigh, M. D.; Hamilton, P.; Hansen, D.; Hara, T.; Hartz, M.; Hasegawa, T.; Hastings, N. C.; Hayato, Y.; Hearty, C.; Helmer, R. L.; Hierholzer, M.; Hignight, J.; Hillairet, A.; Himmel, A.; Hiraki, T.; Hirota, S.; Holeczek, J.; Horikawa, S.; Huang, K.; Ichikawa, A. K.; Ieki, K.; Ieva, M.; Ikeda, M.; Imber, J.; Insler, J.; Irvine, T. J.; Ishida, T.; Ishii, T.; Ives, S. J.; Iyogi, K.; Izmaylov, A.; Jacob, A.; Jamieson, B.; Johnson, R. A.; Jo, J. H.; Jonsson, P.; Joo, K. K.; Jung, C. K.; Kaboth, A. C.; Kajita, T.; Kakuno, H.; Kameda, J.; Kanazawa, Y.; Karlen, D.; Karpikov, I.; Kearns, E.; Khabibullin, M.; Khotjantsev, A.; Kielczewska, D.; Kikawa, T.; Kilinski, A.; Kim, J.; Kim, S. B.; Kisiel, J.; Kitching, P.; Kobayashi, T.; Kogan, G.; Kolaceke, A.; Konaka, A.; Kormos, L. L.; Korzenev, A.; Koseki, K.; Koshio, Y.; Kreslo, I.; Kropp, W.; Kubo, H.; Kudenko, Y.; Kumaratunga, S.; Kurjata, R.; Kutter, T.; Lagoda, J.; Laihem, K.; Laveder, M.; Lawe, M.; Lazos, M.; Lee, K. P.; Licciardi, C.; Lim, I. T.; Lindner, T.; Lister, C.; Litchfield, R. P.; Longhin, A.; Lopez, G. D.; Ludovici, L.; Macaire, M.; Magaletti, L.; Mahn, K.; Malek, M.; Manly, S.; Marino, A. D.; Marteau, J.; Martin, J. F.; Maruyama, T.; Marzec, J.; Masliah, P.; Mathie, E. L.; Matveev, V.; Mavrokoridis, K.; Mazzucato, E.; McCauley, N.; McFarland, K. S.; McGrew, C.; Metelko, C.; Mijakowski, P.; Miller, C. A.; Minamino, A.; Mineev, O.; Mine, S.; Missert, A.; Miura, M.; Monfregola, L.; Moriyama, S.; Mueller, Th. A.; Murakami, A.; Murdoch, M.; Murphy, S.; Myslik, J.; Nagasaki, T.; Nakadaira, T.; Nakahata, M.; Nakai, T.; Nakamura, K.; Nakayama, S.; Nakaya, T.; Nakayoshi, K.; Nielsen, C.; Nirkko, M.; Nishikawa, K.; Nishimura, Y.; O'Keeffe, H. M.; Ohta, R.; Okumura, K.; Okusawa, T.; Oryszczak, W.; Oser, S. M.; Otani, M.; Owen, R. A.; Oyama, Y.; Pac, M. Y.; Palladino, V.; Paolone, V.; Payne, D.; Pearce, G. F.; Perevozchikov, O.; Perkin, J. D.; Petrov, Y.; Pinzon Guerra, E. S.; Pistillo, C.; Plonski, P.; Poplawska, E.; Popov, B.; Posiadala, M.; Poutissou, J.-M.; Poutissou, R.; Przewlocki, P.; Quilain, B.; Radicioni, E.; Ratoff, P. N.; Ravonel, M.; Rayner, M. A. M.; Redij, A.; Reeves, M.; Reinherz-Aronis, E.; Retiere, F.; Robert, A.; Rodrigues, P. A.; Rondio, E.; Roth, S.; Rubbia, A.; Ruterbories, D.; Sacco, R.; Sakashita, K.; Sánchez, F.; Scantamburlo, E.; Scholberg, K.; Schwehr, J.; Scott, M.; Seiya, Y.; Sekiguchi, T.; Sekiya, H.; Sgalaberna, D.; Shiozawa, M.; Short, S.; Shustrov, Y.; Sinclair, P.; Smith, B.; Smith, R. J.; Smy, M.; Sobczyk, J. T.; Sobel, H.; Sorel, M.; Southwell, L.; Stamoulis, P.; Steinmann, J.; Still, B.; Suda, Y.; Suzuki, A.; Suzuki, K.; Suzuki, S. Y.; Suzuki, Y.; Szeglowski, T.; Tacik, R.; Tada, M.; Takahashi, S.; Takeda, A.; Takeuchi, Y.; Tanaka, H. A.; Tanaka, M. M.; Taylor, I. J.; Terhorst, D.; Terri, R.; Thompson, L. F.; Thorley, A.; Tobayama, S.; Toki, W.; Tomura, T.; Totsuka, Y.; Touramanis, C.; Tsukamoto, T.; Tzanov, M.; Uchida, Y.; Ueno, K.; Vacheret, A.; Vagins, M.; Vasseur, G.; Wachala, T.; Waldron, A. V.; Walter, C. W.; Wark, D.; Wascko, M. O.; Weber, A.; Wendell, R.; Wilkes, R. J.; Wilking, M. J.; Wilkinson, C.; Williamson, Z.; Wilson, J. R.; Wilson, R. J.; Wongjirad, T.; Yamada, Y.; Yamamoto, K.; Yanagisawa, C.; Yen, S.; Yershov, N.; Yokoyama, M.; Yuan, T.; Zalewska, A.; Zalipska, J.; Zambelli, L.; Zaremba, K.; Ziembicki, M.; Zimmerman, E. D.; Zito, M.; Żmuda, J.

    2014-01-01

    The Tokai to Kamioka (T2K) experiment studies neutrino oscillations using a beam of muon neutrinos produced by an accelerator. The neutrinos travel from J-PARC on the east coast of Japan and are detected 295 kilometers further away in the Super-Kamiokande detector. A complex of near detectors located 280 meters away from the neutrino production target is used to better characterize the neutrino beam and reduce systematic uncertainties. The experiment aims at measuring electronic neutrino appearance (νμ →νe oscillation) to measure the neutrino mixing angle θ13, and muon neutrino disappearance to measure the neutrino mixing angle θ23 and mass splitting | Δ m322 |. We report here electron neutrino appearance results using three years of data, recorded until the 2012 summer, as well as muon neutrino disappearance results based on the data coming from the first two years of the experiment.

  6. Identification of E-cadherin signature motifs functioning as cleavage sites for Helicobacter pylori HtrA

    NASA Astrophysics Data System (ADS)

    Schmidt, Thomas P.; Perna, Anna M.; Fugmann, Tim; Böhm, Manja; Jan Hiss; Haller, Sarah; Götz, Camilla; Tegtmeyer, Nicole; Hoy, Benjamin; Rau, Tilman T.; Neri, Dario; Backert, Steffen; Schneider, Gisbert; Wessler, Silja

    2016-03-01

    The cell adhesion protein and tumour suppressor E-cadherin exhibits important functions in the prevention of gastric cancer. As a class-I carcinogen, Helicobacter pylori (H. pylori) has developed a unique strategy to interfere with E-cadherin functions. In previous studies, we have demonstrated that H. pylori secretes the protease high temperature requirement A (HtrA) which cleaves off the E-cadherin ectodomain (NTF) on epithelial cells. This opens cell-to-cell junctions, allowing bacterial transmigration across the polarised epithelium. Here, we investigated the molecular mechanism of the HtrA-E-cadherin interaction and identified E-cadherin cleavage sites for HtrA. Mass-spectrometry-based proteomics and Edman degradation revealed three signature motifs containing the [VITA]-[VITA]-x-x-D-[DN] sequence pattern, which were preferentially cleaved by HtrA. Based on these sites, we developed a substrate-derived peptide inhibitor that selectively bound and inhibited HtrA, thereby blocking transmigration of H. pylori. The discovery of HtrA-targeted signature sites might further explain why we detected a stable 90 kDa NTF fragment during H. pylori infection, but also additional E-cadherin fragments ranging from 105 kDa to 48 kDa in in vitro cleavage experiments. In conclusion, HtrA targets E-cadherin signature sites that are accessible in in vitro reactions, but might be partially masked on epithelial cells through functional homophilic E-cadherin interactions.

  7. An experimental study of the wall-pressure fluctuations beneath low Reynolds number turbulent boundary layers.

    PubMed

    Van Blitterswyk, Jared; Rocha, Joana

    2017-02-01

    A more complete understanding of the physical relationships, between wall-pressure and turbulence, is required for modeling flow-induced noise and developing noise reduction strategies. In this study, the wall-pressure fluctuations, induced by low Reynolds number turbulent boundary layers, are experimentally studied using a high-resolution microphone array. Statistical characteristics obtained using traditional cross-correlation and cross-spectra analyses are complimented with wall-pressure-velocity cross-spectra and wavelet cross-correlations. Wall-pressure-velocity correlations revealed that turbulent activity in the buffer layer contributes at least 40% of the energy to the wall-pressure spectrum at all measured frequencies. As Reynolds number increases, the low-frequency energy shifts from the buffer layer to the logarithmic layer, as expected for regions of uniform streamwise momentum formed by hairpin packets. Conditional cross-spectra suggests that the majority of broadband wall-pressure energy is concentrated within the packets, with the pressure signatures of individual hairpin vortices estimated to decay on average within traveling ten displacement thicknesses, and the packet signature is retained for up to seven boundary layer thicknesses on average.

  8. Vegetation, climatic and floral changes at the Cretaceous-Tertiary boundary

    USGS Publications Warehouse

    Wolfe, J.A.; Upchurch, G.R.

    1986-01-01

    he western interior of North America has the only known non-marine sections that contain the iridium-rich clay interpreted as the Cretaceous-Tertiary (K-T) boundary1-7. Because vegetation and climate can be directly inferred from physiognomy of leaves8-15 and because leaf species typically represent low taxonomic categories, studies of leaf floras in these sections provide data on the effects of a terminal Cretaceous event on the land flora, vegetation and climate. A previous study based on detailed sampling of leaves and their dispersed cuticle16 in the Raton Basin provides a framework for interpretation of other leaf sequences over 20 degrees of latitude. We conclude that at the boundary there were: (1) High levels of extinction in the south and low levels in the north; (2) major ecological disruption followed by long-term vegetational changes that mimicked normal ecological succession; (3) a major increase in precipitation; and (4) a brief, low-temperature excursion, which supports models of an 'impact winter'. ?? 1986 Nature Publishing Group.

  9. Magnetic spectral signatures in the Earth's magnetosheath and plasma depletion layer

    NASA Technical Reports Server (NTRS)

    Anderson, Brian J.; Fuselier, Stephen A.; Gary, S. Peter; Denton, Richard E.

    1994-01-01

    Correlations between plasma properties and magnetic fluctuations in the sub-solar magnetosheath downstream of a quasi-perpendicular shock have been found and indicate that mirror and ion cyclotronlike fluctuations correlate with the magnetosheath proper and plasma depletion layer, respectively (Anderson and Fueselier, 1993). We explore the entire range of magnetic spectral signatures observed from the Active Magnetospheric Particle Tracer Explorers/Charge Composition Explorer (AMPTE/CCE)spacecraft in the magnetosheath downstream of a quasi-perpendicular shock. The magnetic spectral signatures typically progress from predominantly compressional fluctuations,delta B(sub parallel)/delta B perpendicular to approximately 3, with F/F (sub p) less than 0.2 (F and F (sub p) are the wave frequency and proton gyrofrequency, respectively) to predominantly transverse fluctuations, delta B(sub parallel)/delta B perpendicular to approximately 0.3, extending up to F(sub p). The compressional fluctuations are characterized by anticorrelation between the field magnitude and electron density, n(sub e), and by a small compressibility, C(sub e) identically equal to (delta n(sub e)/n(sub e)) (exp 2) (B/delta B(sub parallel)) (exp 2) approximately 0.13, indicative of mirror waves. The spectral characteristics of the transverse fluctuations are in agreement with predictions of linear Vlasov theory for the H(+) and He(2+) cyclotron modes. The power spectra and local plasma parameters are found to vary in concert: mirror waves occur for beta(s ub parallel p) (beta (sub parallel p) identically = 2 mu(sub zero) n(sub p) kT (sub parallel p) / B(exp 2) approximately = 2, A(sub p) indentically = T(sub perpendicular to p)/T(sub parallel p) - 1 approximately = 0.4, whereas cyclotron waves occur for beta (sub parallel p) approximately = 0.2 and A(sub p) approximately = 2. The transition from mirror to cyclotron modes is predicted by linear theory. The spectral characteristics overlap for

  10. Stabilizing a solution of the 2D Navier-Stokes system in the exterior of a bounded domain by means of a control on the boundary

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gorshkov, Aleksei V

    2012-09-30

    The problem of stabilizing a solution of the 2D Navier-Stokes system defined in the exterior of a bounded domain with smooth boundary is investigated. For a given initial velocity field a control on the boundary of the domain must be constructed such that the solution stabilizes to a prescribed vortex solution or trivial solution at the rate of 1/t{sup k}. On the way, related questions are investigated, concerning the behaviour of the spectrum of an operator under a relatively compact perturbation and the existence of attracting invariant manifolds. Bibliography: 21 titles.

  11. Evidence for a second impactor at the K-Pg Boundary in Baja California, Mexico

    NASA Astrophysics Data System (ADS)

    Santa Catharina, Amanda; Kneller, Benjamin Charles; Charao Marques, Juliana; McArthur, Adam Daniel; Kane, Ian Antony; Silvestre Cevallos Ferriz, Sergio Rafael

    2017-04-01

    Controversies remain regarding the trigger, or triggers, of the Cretaceous/Paleogene Mass Extinction. The Chicxulub Impact and the Deccan Volcanism are the main candidates, but discussions about the timing of these events and the magnitude of their effects on the biota are ongoing. Data collected around the globe suggests that profound alterations in the biosphere occurred at this interval, and locations in the Northeastern Atlantic margin and the Gulf of Mexico show evidences of tsunamis and mass waste deposits directly associated with the Chicxulub Impact. Close to El Rosario, Baja California, an enigmatic stratigraphic succession spanning this interval occurs. The succession is distinct from the normal submarine slope deposits in this region and consists of (1) 30 m thick muddy debrites, rich in terrestrial material including fossilized tree trunks up to 2m long and with evidence of exposure to fires, glassy tektites and a horizon rich in gastropods, bivalves, and fragments of corals; (2) an up to 20 m thick coarse grained tuffaceous interval, andesitic in composition, within a channel-like geometry cutting into the debrites, with lapilli (ranging from 1 to 15 cm in size) in discrete sets, fossilized tree trunks close to the base, tektites and shocked quartz; and (3) muddy debrites interbedded with tuffaceous lenses that become less frequent up section. This succession sits between hemipelagic slope deposits, with an abrupt basal contact onto Upper Maastrichtian mudstones and a gradational top, which represents a stabilisation and return to the typical sedimentation environment, with Danian fauna and flora. We believe unit 1 represents material transported onto the slope by the seismic activity caused by the impact of a bolide, which destabilised the coastal region. The tuffaceous channelized unit has been dated (SHRIMP U-Pb in zircons), and its age is indistinguishable from the proposed ages for the K-Pg Boundary. No volcanic activity of this age has been

  12. Magnetic signature of overbank sediment in industry impacted floodplains identified by data mining methods

    NASA Astrophysics Data System (ADS)

    Chudaničová, Monika; Hutchinson, Simon M.

    2016-11-01

    Our study attempts to identify a characteristic magnetic signature of overbank sediments exhibiting anthropogenically induced magnetic enhancement and thereby to distinguish them from unenhanced sediments with weak magnetic background values, using a novel approach based on data mining methods, thus providing a mean of rapid pollution determination. Data were obtained from 539 bulk samples from vertical profiles through overbank sediment, collected on seven rivers in the eastern Czech Republic and three rivers in northwest England. k-Means clustering and hierarchical clustering methods, paired group (UPGMA) and Ward's method, were used to divide the samples to natural groups according to their attributes. Interparametric ratios: SIRM/χ; SIRM/ARM; and S-0.1T were chosen as attributes for analyses making the resultant model more widely applicable as magnetic concentration values can differ by two orders. Division into three clusters appeared to be optimal and corresponded to inherent clusters in the data scatter. Clustering managed to separate samples with relatively weak anthropogenically induced enhancement, relatively strong anthropogenically induced enhancement and samples lacking enhancement. To describe the clusters explicitly and thus obtain a discrete magnetic signature, classification rules (JRip method) and decision trees (J4.8 and Simple Cart methods) were used. Samples lacking anthropogenic enhancement typically exhibited an S-0.1T < c. 0.5, SIRM/ARM < c. 150 and SIRM/χ < c. 6000 A m-1. Samples with magnetic enhancement all exhibited an S-0.1T > 0.5. Samples with relatively stronger anthropogenic enhancement were unequivocally distinguished from the samples with weaker enhancement by an SIRM/ARM > c. 150. Samples with SIRM/ARM in a range c. 126-150 were classified as relatively strongly enhanced when their SIRM/χ > 18 000 A m-1 and relatively less enhanced when their SIRM/χ < 18 000 A m-1. An additional rule was arbitrary added to exclude samples with

  13. Radar Differential Phase Signatures of Ice Orientation for the Prediction of Lightning Initiation and Cessation

    NASA Technical Reports Server (NTRS)

    Carey, L.D.; Petersen, W.A.; Deierling, W.

    2009-01-01

    other co-polar back-scattering radar measurements like differential reflectivity (Z(sub dr)) typically measured by operational dual-polarimetric radars are not sensitive to these changes in ice crystal orientation. However, prior research has demonstrated that oriented ice crystals cause significant propagation effects that can be routinely measured by most dual-polarimetric radars from X-band (3 cm) to S-band (10 cm) wavelengths using the differential propagation phase shift (often just called differential phase, phi(sub dp)) or its range derivative, the specific differential phase (K(sub dp)). Advantages of the differential phase include independence from absolute or relative power calibration, attenuation, differential attenuation and relative insensitivity to ground clutter and partial beam occultation effects (as long as the signal remains above noise). In research mode, these sorts of techniques have been used to anticipate initial cloud electrification, lightning initiation, and cessation. In this study, we develop a simplified model of ice crystal size, shape, orientation, dielectric, and associated radar scattering and propagation effects in order to simulate various idealized scenarios of ice crystals responding to a hypothetical electric field and their dual-polarimetric radar signatures leading up to lightning initiation and particularly cessation. The sensitivity of the K(sub dp) ice orientation signature to various ice properties and radar wavelength will be explored. Since K(sub dp) is proportional to frequency in the Rayleigh- Gans scattering regime, the ice orientation signatures should be more obvious at higher (lower) frequencies (wavelengths). As a result, simulations at radar wavelengths from 10 cm down to 1 cm (Ka-band) will be conducted. Resonance effects will be considered using the T-matrix method. Since most K(sub dp) Vbased observations have been shown at S-band, we will present ice orientation signatures from C-band (UAH/NASA ARMOR) and X

  14. Optical Signatures of Coupled Quantum Dots

    DTIC Science & Technology

    2006-02-03

    Optical Signatures of Coupled Quantum Dots E. A. Stinaff,1 M. Scheibner,1 A. S . Bracker,1 I. V. Ponomarev,1 V. L. Korenev ,2 M. E. Ware,1 M. F. Doty,1...possibility of optically coupling quantum dots for application in quantum information processing. S emiconductor approaches to quantum information can...REPORTS 3 FEBRUARY 2006 VOL 311 SCIENCE www.sciencemag.org636 o n A ug us t 1 4, 2 00 7 w w w . s ci en ce m ag .o rg D ow nl oa de d fr om Report

  15. Genetic Signatures of HIV-1 Envelope-mediated Bystander Apoptosis

    PubMed Central

    Joshi, Anjali; Lee, Raphael T. C.; Mohl, Jonathan; Sedano, Melina; Khong, Wei Xin; Ng, Oon Tek; Maurer-Stroh, Sebastian; Garg, Himanshu

    2014-01-01

    The envelope (Env) glycoprotein of HIV is an important determinant of viral pathogenesis. Several lines of evidence support the role of HIV-1 Env in inducing bystander apoptosis that may be a contributing factor in CD4+ T cell loss. However, most of the studies testing this phenomenon have been conducted with laboratory-adapted HIV-1 isolates. This raises the question of whether primary Envs derived from HIV-infected patients are capable of inducing bystander apoptosis and whether specific Env signatures are associated with this phenomenon. We developed a high throughput assay to determine the bystander apoptosis inducing activity of a panel of primary Envs. We tested 38 different Envs for bystander apoptosis, virion infectivity, neutralizing antibody sensitivity, and putative N-linked glycosylation sites along with a comprehensive sequence analysis to determine if specific sequence signatures within the viral Env are associated with bystander apoptosis. Our studies show that primary Envs vary considerably in their bystander apoptosis-inducing potential, a phenomenon that correlates inversely with putative N-linked glycosylation sites and positively with virion infectivity. By use of a novel phylogenetic analysis that avoids subtype bias coupled with structural considerations, we found specific residues like Arg-476 and Asn-425 that were associated with differences in bystander apoptosis induction. A specific role of these residues was also confirmed experimentally. These data demonstrate for the first time the potential of primary R5 Envs to mediate bystander apoptosis in CD4+ T cells. Furthermore, we identify specific genetic signatures within the Env that may be associated with the bystander apoptosis-inducing phenotype. PMID:24265318

  16. Thermodynamic properties of scapolites at temperatures ranging from 10 K to 1000 K

    USGS Publications Warehouse

    Komada, N.; Moecher, D.P.; Westrum, E.F.; Hemingway, B.S.; Zolotov, M. Yu; Semenov, Y.V.; Khodakovsky, I.L.

    1996-01-01

    The heat capacities of five mineral samples from the scapolite solid-solution series, Na4Al3Si9O24Cl (marialite) to Ca4Al6Si6O24CO3 (meionite), were measured by the adiabatic method from T=8 K to T=350 K and by the differential scanning calorimetry (d.s.c.) method from T = 300 K to T = 1000 K. The meionite (Me) content in per cent {Me=100 Ca*/(Ca* + Na*)} (where the asterisk indicates that possible substituents are included) and molar heat capacity (Cp,m/R) at T=298.15 K for each sample is: Me28, 82.07; Me44, 82.09; Me55, 83.95; Me69, 85.80; Me88, 84.54. The standard molar entropies, {S,om(298.15 K)-Som(0 K)} R-1 (R=8.31451 J??K-1??mol-1), at T=298.15 K for the respective compositions are: 85.05??0.26, 83.78??0.50, 85.22??0.24, 85.76??0.21, and 84.17??0.59. The calculated standard molar entropies (as above) at T=298.15 K for the end-members marialite and meionite, and for an intermediate composition (mizzonite=Me75) are 84.85, 83.94 and 86.15, respectively. Values of the coefficients in the equation Cp,m/R = a + bT+ cT2 + dT-1/2 + eT-2 (valid from T = 300 K to T =1000 K) are: (Mex, a, b/K, c/K2, d/K-1/2, e/K-2 Me88), 315.580, -0.0795676, 1.52825.10-5, -3954.83, 1808460; Me69, 261.285, -0.0415017, 8.73053.10-7, -3028.28, 1083666; Me55, 232.236, -0.0352222, 6.49875.10-6, 2505.99, 601750; Me44, 276.696, -0.0756614, 2.39722.10-5, -3210.40, 1044363; Me28, 149.917, 0.0229399, -1.23180.10-5, 1208.87, -318470. Smoothed thermodynamic functions for the five samples are also presented. The enthalpies of solution for five natural scapolites were measured in 2PbO??B2O3 melts at T= 973 K by Calvet-type calorimetry. The values of ??solHom/R??K are: Me11, 32.14??0.7; Me28, 32.34??0.4; Me44, 33.66??0.8; Me69, 35.29??0.8; Me88, 32.87??0.3. The calculated enthalpies of formation for stoichiometric scapolites ??fHom/103??R??K at T= 298.15 K are: Me0, -1467.4??1.3; Me11, -1491.2??1.2; Me28, -1527.6??0.9; Me44, -1564.1??1.1; Me55, -1587.4??1.1; Me69, -1619.7??1.1; Me75, -1633.1??1.1; Me

  17. Dielectric, Piezoelectric and Variable Range Hopping Conductivity Studies of Bi0.5(Na, K)0.5TiO3 Ceramics

    NASA Astrophysics Data System (ADS)

    Pattipaka, Srinivas; James, A. R.; Dobbidi, Pamu

    2018-04-01

    We report a detailed study on the structural, microstructural, piezoelectric, dielectric and AC conductivity of Bi0.5(Na1-x K x )0.5TiO3 (BNKT; x = 0, 0.1, 0.2 and 0.3) ceramics fabricated by a conventional solid-state reaction method. XRD and Raman analysis revealed that Bi0.5(Na0.8K0.2)0.5TiO3 and Bi0.5(Na0.7K0.3)0.5TiO3 ceramics exhibit a mixture of rhombohedral and tetragonal structures. The segregation of K at the grain boundary was confirmed by transmission electron microscopy and is related to typical microstructural local compositional mapping analysis. Two transitions, at ˜ 330°C and 150°C, observed from the ɛ' versus T curve in pure BNT are associated with the ferroelectric tetragonal to paraelectric cubic phase (T C) and ferroelectric rhombohedral to ferroelectric tetragonal phase (T d), respectively. Further, the T C and T d shifted towards the lower temperature with a rise in K concentration. Frequency dispersion of T d and T C suggest that BNKT ceramics exhibit a weak relaxor behavior with diffuse phase transition, which is confirmed by Uchino-Nomura criteria and the Vogel-Fulcher law. The AC resistivity ρ ac(T) follows the Mott variable range hopping conduction mechanism. A significant enhancement of dielectric and piezoelectric properties were observed for x = 0.2 system: dielectric constant (ɛ' = 1273), dielectric loss (tanδ = 0.047) at 1 kHz, electromechanical coupling coefficients (k ij : k 33, k t ˜ 60%, k 31 ˜ 62% and k p ˜ 46%), elastic coupling coefficients ( S_{33}D = 6.40 × 10-13 m2/N and S_{33}E = 10.06 × 10-13 m2/N) and piezoelectric constants (d 33 = 64.23 pC/N and g 33 = 5.69 × 10-3 Vm/N).

  18. Dielectric, Piezoelectric and Variable Range Hopping Conductivity Studies of Bi0.5(Na, K)0.5TiO3 Ceramics

    NASA Astrophysics Data System (ADS)

    Pattipaka, Srinivas; James, A. R.; Dobbidi, Pamu

    2018-07-01

    We report a detailed study on the structural, microstructural, piezoelectric, dielectric and AC conductivity of Bi0.5(Na1- x K x )0.5TiO3 (BNKT; x = 0, 0.1, 0.2 and 0.3) ceramics fabricated by a conventional solid-state reaction method. XRD and Raman analysis revealed that Bi0.5(Na0.8K0.2)0.5TiO3 and Bi0.5(Na0.7K0.3)0.5TiO3 ceramics exhibit a mixture of rhombohedral and tetragonal structures. The segregation of K at the grain boundary was confirmed by transmission electron microscopy and is related to typical microstructural local compositional mapping analysis. Two transitions, at ˜ 330°C and 150°C, observed from the ɛ' versus T curve in pure BNT are associated with the ferroelectric tetragonal to paraelectric cubic phase ( T C) and ferroelectric rhombohedral to ferroelectric tetragonal phase ( T d), respectively. Further, the T C and T d shifted towards the lower temperature with a rise in K concentration. Frequency dispersion of T d and T C suggest that BNKT ceramics exhibit a weak relaxor behavior with diffuse phase transition, which is confirmed by Uchino-Nomura criteria and the Vogel-Fulcher law. The AC resistivity ρ ac( T) follows the Mott variable range hopping conduction mechanism. A significant enhancement of dielectric and piezoelectric properties were observed for x = 0.2 system: dielectric constant ( ɛ' = 1273), dielectric loss (tan δ = 0.047) at 1 kHz, electromechanical coupling coefficients ( k ij : k 33, k t ˜ 60%, k 31 ˜ 62% and k p ˜ 46%), elastic coupling coefficients ( S_{33}D = 6.40 × 10-13 m2/N and S_{33}E = 10.06 × 10-13 m2/N) and piezoelectric constants ( d 33 = 64.23 pC/N and g 33 = 5.69 × 10-3 Vm/N).

  19. Observations of the magnetopause current layer: Cases with no boundary layer and tests of recent models

    NASA Technical Reports Server (NTRS)

    Eastman, Timothy E.

    1995-01-01

    Evidence for the probable existence of magnetospheric boundary layers was first presented by Hones, et al. (1972), based on VELA satellite plasma observations (no magnetic field measurements were obtained). This magnetotail boundary layer is now known to be the tailward extension of the high-latitude boundary layer or plasma mantle (first uniquely identified using HEOS 2 plasma and field observations by Rosenbauer et al., 1975) and the low-latitude boundary layer (first uniquely identified using IMP 6 plasma and field observations by Eastman et al., 1976). The magnetospheric boundary layer is the region of magnetosheath-like plasma located Earthward of, but generally contiguous with the magnetopause. This boundary layer is typically identified by comparing low-energy (less than 10 keV) ion spectra across the magnetopause. Low-energy electron measurements are also useful for identifying the boundary layer because the shocked solar wind or magnetosheath has a characteristic spectral signature for electrons as well. However, there are magnetopause crossings where low-energy electrons might suggest a depletion layer outside the magnetopause even though the traditional field-rotation signature indicates that this same region is a boundary layer Earthward of the current layer. Our analyses avoided crossings which exhibit such ambiguities. Pristine magnetopause crossings are magnetopause crossings for which the current layer is well defined and for which there is no adjoining magnetospheric boundary layer as defined above. Although most magnetopause models to date apply to such crossings, few comparisons between such theory and observations of pristine magnetopause crossings have been made because most crossings have an associated magnetospheric boundary layer which significantly affects the applicable boundary conditions for the magnetopause current layer. Furthermore, almost no observational studies of magnetopause microstructure have been done even though key

  20. Harnessing the PI3K/Akt/mTOR pathway in T-cell acute lymphoblastic leukemia: Eliminating activity by targeting at different levels

    PubMed Central

    Ricci, Francesca; Tabellini, Giovanna; Chiarini, Francesca; Tazzari, Pier Luigi; Melchionda, Fraia; Buontempo, Francesca; Pagliaro, Pasqualepaolo; Pession, Andrea; McCubrey, James A.; Martelli, Alberto M.

    2012-01-01

    T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive malignant hematological disorder arising in the thymus from T-cell progenitors. T-ALL mainly affects children and young adults, and remains fatal in 20% of adolescents and 50% of adults, despite progress in polychemotherapy protocols. Therefore, innovative targeted therapies are desperately needed for patients with a dismal prognosis. Aberrant activation of PI3K/Akt/mTOR signaling is a common event in T-ALL patients and portends a poor prognosis. Preclinical studies have highlighted that modulators of PI3K/Akt/mTOR signaling could have a therapeutic relevance in T-ALL. However, the best strategy for inhibiting this highly complex signal transduction pathway is still unclear, as the pharmaceutical companies have disclosed an impressive array of small molecules targeting this signaling network at different levels. Here, we demonstrate that a dual PI3K/PDK1 inhibitor, NVP-BAG956, displayed the most powerful cytotoxic effects against T-ALL cell lines and primary patients samples, when compared with a pan class I PI3K inhibitor (GDC-0941), an allosteric Akt inhibitor (MK-2206), an mTORC1 allosteric inhibitor (RAD-001), or an ATP-competitive mTORC1/mTORC2 inhibitor (KU-63794). Moreover, we also document that combinations of some of the aforementioned drugs strongly synergized against T-ALL cells at concentrations well below their respective IC50. This observation indicates that vertical inhibition at different levels of the PI3K/Akt/mTOR network could be considered as a future innovative strategy for treating T-ALL patients. PMID:22885370

  1. Harnessing the PI3K/Akt/mTOR pathway in T-cell acute lymphoblastic leukemia: eliminating activity by targeting at different levels.

    PubMed

    Bressanin, Daniela; Evangelisti, Camilla; Ricci, Francesca; Tabellini, Giovanna; Chiarini, Francesca; Tazzari, Pier Luigi; Melchionda, Fraia; Buontempo, Francesca; Pagliaro, Pasqualepaolo; Pession, Andrea; McCubrey, James A; Martelli, Alberto M

    2012-08-01

    T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive malignant hematological disorder arising in the thymus from T-cell progenitors. T-ALL mainly affects children and young adults, and remains fatal in 20% of adolescents and 50% of adults, despite progress in polychemotherapy protocols. Therefore, innovative targeted therapies are desperately needed for patients with a dismal prognosis. Aberrant activation of PI3K/Akt/mTOR signaling is a common event in T-ALL patients and portends a poor prognosis. Preclinical studies have highlighted that modulators of PI3K/Akt/mTOR signaling could have a therapeutic relevance in T-ALL. However, the best strategy for inhibiting this highly complex signal transduction pathway is still unclear, as the pharmaceutical companies have disclosed an impressive array of small molecules targeting this signaling network at different levels. Here, we demonstrate that a dual PI3K/PDK1 inhibitor, NVP-BAG956, displayed the most powerful cytotoxic affects against T-ALL cell lines and primary patients samples, when compared with a pan class I PI3K inhibitor (GDC-0941), an allosteric Akt inhibitor (MK-2206), an mTORC1 allosteric inhibitor (RAD-001), or an ATP-competitive mTORC1/mTORC2 inhibitor (KU63794). Moreover, we also document that combinations of some of the aforementioned drugs strongly synergized against T-ALL cells at concentrations well below their respective IC50. This observation indicates that vertical inhibition at different levels of the PI3K/Akt/mTOR network could be considered as a future innovative strategy for treating T-ALL patients.

  2. Phase diagrams for the system water/butyric acid/propylene carbonate at T = 293.2-313.2 K and p = 101.3 kPa

    NASA Astrophysics Data System (ADS)

    Shekarsaraee, Sina; Nahzomi, Hossein Taherpour; Nasiri-Touli, Elham

    2017-11-01

    Phase diagrams for the system water/butyric acid/propylene carbonate were plotted at T = 293.2, 303.2, 313.2 K and p = 101.3 kPa. Acidimetric titration and refractive index methods were used to determine tie-line data. Solubility data revealed that the studied system exhibits type-1 behavior of liquid-liquid equilibrium. The experimental data were regressed and acceptably correlated using the UNIQUAC and NRTL models. As a result, propylene carbonate is a suitable separating agent for aqueous mixture of butyric acid.

  3. Johnson Noise Thermometry in the range 505 K to 933 K

    NASA Astrophysics Data System (ADS)

    Tew, Weston; Labenski, John; Nam, Sae Woo; Benz, Samuel; Dresselhaus, Paul; Martinis, John

    2006-03-01

    The International Temperature Scale of 1990 (ITS-90) is an artifact-based temperature scale, T90, designed to approximate thermodynamic temperature T. The thermodynamic errors of the ITS-90, characterized as the value of T-T90, only recently have been quantified by primary thermodynamic methods. Johnson Noise Thermometry (JNT) is a primary method which can be applied over wide temperature ranges, and NIST is currently using JNT to determine T-T90 in the range 505 K to 933 K, overlapping both acoustic gas-based and radiation-based thermometry. Advances in digital electronics have now made the computationally intensive processing required for JNT viable using noise voltage correlation in the frequency domain. We have also optimized the design of the 5-wire JNT temperature probes to minimize electromagnetic interference and transmission line effects. Statistical uncertainties under 50 μK/K are achievable using relatively modest bandwidths of ˜100 kHz. The NIST JNT system will provide critical data for T-T90 linking together the highly accurate acoustic gas-based data at lower temperatures with the higher-temperature radiation-based data, forming the basis for a new International Temperature Scale with greatly improved thermodynamic accuracy.

  4. K-Rich Basaltic Sources beneath Ultraslow Spreading Central Lena Trough in the Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Ling, X.; Snow, J. E.; Li, Y.

    2016-12-01

    Magma sources fundamentally influence accretion processes at ultraslow spreading ridges. Potassium enriched Mid-Ocean Ridge Basalt (K-MORB) was dredged from the central Lena Trough (CLT) in the Arctic Ocean (Nauret et al., 2011). Its geochemical signatures indicate a heterogeneous mantle source with probable garnet present under low pressure. To explore the basaltic mantle sources beneath the study area, multiple models are carried out predicting melting sources and melting P-T conditions in this study. P-T conditions are estimated by the experimental derived thermobarometer from Hoang and Flower (1998). Batch melting model and major element model (AlphaMELTs) are used to calculate the heterogeneous mantle sources. The modeling suggests phlogopite is the dominant H2O-K bearing mineral in the magma source. 5% partial melting of phlogopite and amphibole mixing with depleted mantle (DM) melt is consistent with the incompatible element pattern of CLT basalt. P-T estimation shows 1198-1212oC/4-7kbar as the possible melting condition for CLT basalt. Whereas the chemical composition of north Lena Trough (NLT) basalt is similar to N-MORB, and the P-T estimation corresponds to 1300oC normal mantle adiabat. The CLT basalt bulk composition is of mixture of 40% of the K-MORB endmember and an N-MORB-like endmember similar to NLT basalt. Therefore the binary mixing of the two endmembers exists in the CLT region. This kind of mixing infers to the tectonic evolution of the region, which is simultaneous to the Arctic Ocean opening.

  5. Computer Modeling of the Effects of Atmospheric Conditions on Sound Signatures

    DTIC Science & Technology

    2016-02-01

    simulation. 11 5. References 1. Attenborough K. Sound propagation in the atmosphere. In: Rossing TD, editor. Springer handbook of...ARL-TR-7602 ● FEB 2016 US Army Research Laboratory Computer Modeling of the Effects of Atmospheric Conditions on Sound ...Laboratory Computer Modeling of the Effects of Atmospheric Conditions on Sound Signatures by Sarah Wagner Science and Engineering Apprentice

  6. THE THIRD SIGNATURE OF GRANULATION IN BRIGHT-GIANT AND SUPERGIANT STARS

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gray, David F.; Pugh, Teznie, E-mail: dfgray@uwo.ca

    2012-04-15

    We investigated third-signature granulation plots for 18 bright giants and supergiants and one giant of spectral classes G0 to M3. These plots reveal the net granulation velocities, averaged over the stellar disk, as a function of depth. Supergiants show significant differences from the 'standard' shape seen for lower-luminosity stars. Most notable is a striking reversal of slope seen for three of the nine supergiants, i.e., stronger lines are more blueshifted than weaker lines, opposite the solar case. Changes in the third-signature plot of {alpha} Sco (M1.5 Iab) with time imply granulation cells that penetrate only the lower portion of themore » photosphere. For those stars showing the standard shape, we derive scaling factors relative to the Sun that serve as a first-order measure of the strength of the granulation relative to the Sun. For G-type stars, the third-signature scale of the bright giants and supergiants is approximately 1.5 times as strong as in dwarfs, but for K stars, there in no discernible difference between higher-luminosity stars and dwarfs. Classical macroturbulence, a measure of the velocity dispersion of the granulation, increases with the third-signature-plot scale factors, but at different rates for different luminosity classes.« less

  7. D120 and K152 within the PH Domain of T Cell Adapter SKAP55 Regulate Plasma Membrane Targeting of SKAP55 and LFA-1 Affinity Modulation in Human T Lymphocytes

    PubMed Central

    Witte, Amelie; Meineke, Bernhard; Sticht, Jana; Philipsen, Lars; Kuropka, Benno; Müller, Andreas J.; Freund, Christian

    2017-01-01

    ABSTRACT The β2-integrin lymphocyte function-associated antigen 1 (LFA-1) is needed for the T cell receptor (TCR)-induced activation of LFA-1 to promote T cell adhesion and interaction with antigen-presenting cells (APCs). LFA-1-mediated cell-cell interactions are critical for proper T cell differentiation and proliferation. The Src kinase-associated phosphoprotein of 55 kDa (SKAP55) is a key regulator of TCR-mediated LFA-1 signaling (inside-out/outside-in signaling). To gain an understanding of how SKAP55 controls TCR-mediated LFA-1 activation, we assessed the functional role of its pleckstrin homology (PH) domain. We identified two critical amino acid residues within the PH domain of SKAP55, aspartic acid 120 (D120) and lysine 152 (K152). D120 facilitates the retention of SKAP55 in the cytoplasm of nonstimulated T cells, while K152 promotes SKAP55 membrane recruitment via actin binding upon TCR triggering. Importantly, the K152-dependent interaction of the PH domain with actin promotes the binding of talin to LFA-1, thus facilitating LFA-1 activation. These data suggest that K152 and D120 within the PH domain of SKAP55 regulate plasma membrane targeting and TCR-mediated activation of LFA-1. PMID:28052935

  8. Auroral boundary movement rates during substorm onsets and their correspondence to solar wind and the AL index

    NASA Astrophysics Data System (ADS)

    Andriyas, Tushar

    2016-08-01

    A statistical analysis of the equatorward and poleward auroral boundary movement during substorm onsets, the related solar wind activity, GOES 8 and 10 magnetic field, and the westward auroral electrojet (AL) index is undertaken, during the years 2000-2002. Auroral boundary data were obtained from the British Antarctic Survey (BAS). These boundaries were derived using auroral images from the IMAGE satellite. The timing of the onsets was derived from the Frey et al. (2004) database. Data were also classified based on the peak AL around the onset and the onset latitude, in order to analyze the differences, if any, in the rates of movement. It was found that the absolute ratio of the rate of movement of the mean poleward and equatorward boundaries was slower than the rate of mean movement around the midnight sector. The stronger the onset (in terms of the peak AL around the onset) was, the faster the rate of movement for both the boundaries. This implies that the stronger the AL signature around the onset, the weaker the magnetic field was prior to the onset and the faster it increased after the onset at GOES 8 and 10 locations. The stronger the AL signature, the thicker the latitudinal width of the aurora was, prior to the onset and higher was the increase in the width after the onset, due to large poleward and average equatorward expansion. Magnetotail field line stretching and relaxation rates as measured by GOES were also found to lie in the same order of magnitude. It is therefore concluded that the rates of latitudinal descent prior to a substorm onset and ascent after the onset, of the mean auroral boundaries, corresponds to the rate at which the tail field lines stretch and relax before and after the onset, respectively.

  9. Uncertainty in hydrological signatures

    NASA Astrophysics Data System (ADS)

    McMillan, Hilary; Westerberg, Ida

    2015-04-01

    Information that summarises the hydrological behaviour or flow regime of a catchment is essential for comparing responses of different catchments to understand catchment organisation and similarity, and for many other modelling and water-management applications. Such information types derived as an index value from observed data are known as hydrological signatures, and can include descriptors of high flows (e.g. mean annual flood), low flows (e.g. mean annual low flow, recession shape), the flow variability, flow duration curve, and runoff ratio. Because the hydrological signatures are calculated from observed data such as rainfall and flow records, they are affected by uncertainty in those data. Subjective choices in the method used to calculate the signatures create a further source of uncertainty. Uncertainties in the signatures may affect our ability to compare different locations, to detect changes, or to compare future water resource management scenarios. The aim of this study was to contribute to the hydrological community's awareness and knowledge of data uncertainty in hydrological signatures, including typical sources, magnitude and methods for its assessment. We proposed a generally applicable method to calculate these uncertainties based on Monte Carlo sampling and demonstrated it for a variety of commonly used signatures. The study was made for two data rich catchments, the 50 km2 Mahurangi catchment in New Zealand and the 135 km2 Brue catchment in the UK. For rainfall data the uncertainty sources included point measurement uncertainty, the number of gauges used in calculation of the catchment spatial average, and uncertainties relating to lack of quality control. For flow data the uncertainty sources included uncertainties in stage/discharge measurement and in the approximation of the true stage-discharge relation by a rating curve. The resulting uncertainties were compared across the different signatures and catchments, to quantify uncertainty

  10. Digital Signature Management.

    ERIC Educational Resources Information Center

    Hassler, Vesna; Biely, Helmut

    1999-01-01

    Describes the Digital Signature Project that was developed in Austria to establish an infrastructure for applying smart card-based digital signatures in banking and electronic-commerce applications. Discusses the need to conform to international standards, an international certification infrastructure, and security features for a public directory…

  11. Identification and Characteristics of Signature Whistles in Wild Bottlenose Dolphins (Tursiops truncatus) from Namibia

    PubMed Central

    Elwen, Simon Harvey; Nastasi, Aurora

    2014-01-01

    A signature whistle type is a learned, individually distinctive whistle type in a dolphin's acoustic repertoire that broadcasts the identity of the whistle owner. The acquisition and use of signature whistles indicates complex cognitive functioning that requires wider investigation in wild dolphin populations. Here we identify signature whistle types from a population of approximately 100 wild common bottlenose dolphins (Tursiops truncatus) inhabiting Walvis Bay, and describe signature whistle occurrence, acoustic parameters and temporal production. A catalogue of 43 repeatedly emitted whistle types (REWTs) was generated by analysing 79 hrs of acoustic recordings. From this, 28 signature whistle types were identified using a method based on the temporal patterns in whistle sequences. A visual classification task conducted by 5 naïve judges showed high levels of agreement in classification of whistles (Fleiss-Kappa statistic, κ = 0.848, Z = 55.3, P<0.001) and supported our categorisation. Signature whistle structure remained stable over time and location, with most types (82%) recorded in 2 or more years, and 4 identified at Walvis Bay and a second field site approximately 450 km away. Whistle acoustic parameters were consistent with those of signature whistles documented in Sarasota Bay (Florida, USA). We provide evidence of possible two-voice signature whistle production by a common bottlenose dolphin. Although signature whistle types have potential use as a marker for studying individual habitat use, we only identified approximately 28% of those from the Walvis Bay population, despite considerable recording effort. We found that signature whistle type diversity was higher in larger dolphin groups and groups with calves present. This is the first study describing signature whistles in a wild free-ranging T. truncatus population inhabiting African waters and it provides a baseline on which more in depth behavioural studies can be based. PMID:25203814

  12. Inflammatory macrophage-associated 3-gene signature predicts subclinical allograft injury and graft survival.

    PubMed

    Azad, Tej D; Donato, Michele; Heylen, Line; Liu, Andrew B; Shen-Orr, Shai S; Sweeney, Timothy E; Maltzman, Jonathan Scott; Naesens, Maarten; Khatri, Purvesh

    2018-01-25

    Late allograft failure is characterized by cumulative subclinical insults manifesting over many years. Although immunomodulatory therapies targeting host T cells have improved short-term survival rates, rates of chronic allograft loss remain high. We hypothesized that other immune cell types may drive subclinical injury, ultimately leading to graft failure. We collected whole-genome transcriptome profiles from 15 independent cohorts composed of 1,697 biopsy samples to assess the association of an inflammatory macrophage polarization-specific gene signature with subclinical injury. We applied penalized regression to a subset of the data sets and identified a 3-gene inflammatory macrophage-derived signature. We validated discriminatory power of the 3-gene signature in 3 independent renal transplant data sets with mean AUC of 0.91. In a longitudinal cohort, the 3-gene signature strongly correlated with extent of injury and accurately predicted progression of subclinical injury 18 months before clinical manifestation. The 3-gene signature also stratified patients at high risk of graft failure as soon as 15 days after biopsy. We found that the 3-gene signature also distinguished acute rejection (AR) accurately in 3 heart transplant data sets but not in lung transplant. Overall, we identified a parsimonious signature capable of diagnosing AR, recognizing subclinical injury, and risk-stratifying renal transplant patients. Our results strongly suggest that inflammatory macrophages may be a viable therapeutic target to improve long-term outcomes for organ transplantation patients.

  13. An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1 T

    DOE PAGES

    Nicholson, Wayne L.; Davis, Christina L.; Shapiro, Nicole; ...

    2016-09-08

    Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1 T is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1 T. The genome comprised 2,748,608 bp with a G+C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272;more » and 65,904 bp.« less

  14. An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1 T

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nicholson, Wayne L.; Davis, Christina L.; Shapiro, Nicole

    Despite their ubiquity and their involvement in food spoilage, the genus Carnobacterium remains rather sparsely characterized at the genome level. Carnobacterium inhibens K1 T is a member of the Carnobacteriaceae family within the class Bacilli. This strain is a Gram-positive, rod-shaped bacterium isolated from the intestine of an Atlantic salmon. The present study determined the genome sequence and annotation of Carnobacterium inhibens K1 T. The genome comprised 2,748,608 bp with a G+C content of 34.85 %, which included 2621 protein-coding genes and 116 RNA genes. The strain contained five contigs corresponding to presumptive plasmids of sizes: 19,036; 24,250; 26,581; 65,272;more » and 65,904 bp.« less

  15. Nickel-smelting fumes increased the expression of HIF-1α through PI3K/ERK pathway in NIH/3T3 cells

    PubMed Central

    Han, Dan; Yang, Yue; Zhang, Lin; Wang, Chao; Wang, Yue; Tan, Wen-Qiao; Hu, Xue-Ying; Wu, Yong-Hui

    2016-01-01

    Objective: The purpose of this study was to investigate the effects of Nickel (Ni) -smelting fumes on oncogenic proteins in vivo and in vitro. Methods: Ni fallout beside a Ni smelting furnace in a factory was sampled to study its toxic effect. The effects of Ni-smelting fumes on the regulation of PI3K and ERK signaling pathways and the important downstream hypoxia inducible factor, HIF-1α, were studied both in NIH/3T3 cells and in the lung tissue of rats. NIH/3T3 cell transformation induced by Ni-smelting fumes was also observed. Results: Ni-smelting fumes activated PI3K, p-AKT, p70S6K1, and ERK proteins and increased HIF-1α expression in a time- and dose-dependent manner. However, activation was suppressed when NIH/3T3 cells were pretreated with PI3K/AKT or ERK inhibitors. Ni-smelting fumes caused malignant transformation of NIH/3T3 cells. Conclusions: Ni-smelting fumes increased the expression of HIF-1α through the PI3K/ERK pathway in NIH/3T3 cells and induced malignant transformation in these cells indicating that Ni-smelting fumes may be a potential carcinogen in mammalian cells. PMID:27488040

  16. Understanding the ion distributions near the boundaries of reconnection outflow region

    NASA Astrophysics Data System (ADS)

    Zhou, Xu-Zhi; Pan, Dong-Xiao; Angelopoulos, Vassilis; Runov, Andrei; Zong, Qiu-Gang; Pu, Zu-Yin

    2016-10-01

    An interesting signature observed shortly after the onset of magnetotail reconnection is the gradual appearance of a local peak of ion phase space density (PSD) in the duskward and downstream direction separated from the colder, nearly isotropic ion population. Such a characteristic ion distribution, served as a diagnostic signature of magnetotail reconnection and well reproduced by a particle-tracing Liouville simulation, are found to appear only near the off-equatorial boundaries of the reconnection outflow region. Further analysis on ion trajectories suggests that the ions within the local peak and within the neighboring PSD cleft both belong to the outflowing population; on top of their outflowing motion, they both meander across the neutral sheet to exhibit duskward velocities near the off-equatorial edges of their trajectories. The difference between them is that the local peak originates from ions previously constituting the preonset plasma sheet, whereas the cleft corresponds to the inflowing lobe ions before they are repelled in the downstream direction. As reconnection proceeds, the local PSD peak gradually attenuates and then disappears, which is a signature of reconnection flushing effect that depletes the ions in the preonset plasma sheet and eventually replaces them by lobe ions.

  17. Thermodynamics of a third-generation poly(phenylene-pyridyl) dendron decorated with dodecyl groups in the range of T → 0 to 480 K

    NASA Astrophysics Data System (ADS)

    Smirnova, N. N.; Markin, A. V.; Tsvetkova, L. Ya.; Kuchkina, N. V.; Yuzik-Klimova, E. Yu.; Shifrina, Z. B.

    2016-05-01

    The heat capacity of a glassy third-generation poly(phenylene-pyridyl) dendron decorated with dodecyl groups is studied for the first time via high-precision adiabatic vacuum and differential scanning calorimetry in the temperature range of 6 to 520 K. The standard thermodynamic functions (molar heat capacity C p ° , enthalpy H°( T), entropy S°( T), and Gibbs energy G°( T)- H°(0)) in the range of T → 0 to 480 K, and the entropy of formation at 298.15 K, are calculated on the basis of the obtained data. The thermodynamic properties of the dendron and the corresponding third-generation poly(phenylene-pyridyl) dendrimer studied earlier are compared.

  18. Signatures of a staggered-flux phase in the t-J model with two holes on a 32-site lattice

    NASA Astrophysics Data System (ADS)

    Leung, P. W.

    2000-09-01

    We study the relevance of the staggered-flux phase in the t-J model using a system with two holes on a 32-site lattice with periodic boundary conditions. We find a staggered-flux pattern in the current-current correlation in the lowest energy d-wave state where there is mutual attraction between the holes. This staggered correlation decays faster with distance when the hole binding becomes stronger. This is in complete agreement with a recent study by Ivanov, Lee, and Wen [Phys. Rev. Lett. 84, 3958 (2000)] based on the SU(2) theory, and strongly suggests that the staggered-flux phase is a key ingredient in the t-J model. We further show that this staggered-flux pattern does not exist in a state where the holes repel each other. Correlations of the chirality operator S1.(S2×S3) show that the staggered pattern of the chirality is closely tied to the holes.

  19. A peripheral blood transcriptomic signature predicts autoantibody development in infants at risk of type 1 diabetes.

    PubMed

    Mehdi, Ahmed M; Hamilton-Williams, Emma E; Cristino, Alexandre; Ziegler, Anette; Bonifacio, Ezio; Le Cao, Kim-Anh; Harris, Mark; Thomas, Ranjeny

    2018-03-08

    Autoimmune-mediated destruction of pancreatic islet β cells results in type 1 diabetes (T1D). Serum islet autoantibodies usually develop in genetically susceptible individuals in early childhood before T1D onset, with multiple islet autoantibodies predicting diabetes development. However, most at-risk children remain islet-antibody negative, and no test currently identifies those likely to seroconvert. We sought a genomic signature predicting seroconversion risk by integrating longitudinal peripheral blood gene expression profiles collected in high-risk children included in the BABYDIET and DIPP cohorts, of whom 50 seroconverted. Subjects were followed for 10 years to determine time of seroconversion. Any cohort effect and the time of seroconversion were corrected to uncover genes differentially expressed (DE) in seroconverting children. Gene expression signatures associated with seroconversion were evident during the first year of life, with 67 DE genes identified in seroconverting children relative to those remaining antibody negative. These genes contribute to T cell-, DC-, and B cell-related immune responses. Near-birth expression of ADCY9, PTCH1, MEX3B, IL15RA, ZNF714, TENM1, and PLEKHA5, along with HLA risk score predicted seroconversion (AUC 0.85). The ubiquitin-proteasome pathway linked DE genes and T1D susceptibility genes. Therefore, a gene expression signature in infancy predicts risk of seroconversion. Ubiquitination may play a mechanistic role in diabetes progression.

  20. A peripheral blood transcriptomic signature predicts autoantibody development in infants at risk of type 1 diabetes

    PubMed Central

    Mehdi, Ahmed M.; Hamilton-Williams, Emma E.; Cristino, Alexandre; Ziegler, Anette; Harris, Mark

    2018-01-01

    Autoimmune-mediated destruction of pancreatic islet β cells results in type 1 diabetes (T1D). Serum islet autoantibodies usually develop in genetically susceptible individuals in early childhood before T1D onset, with multiple islet autoantibodies predicting diabetes development. However, most at-risk children remain islet-antibody negative, and no test currently identifies those likely to seroconvert. We sought a genomic signature predicting seroconversion risk by integrating longitudinal peripheral blood gene expression profiles collected in high-risk children included in the BABYDIET and DIPP cohorts, of whom 50 seroconverted. Subjects were followed for 10 years to determine time of seroconversion. Any cohort effect and the time of seroconversion were corrected to uncover genes differentially expressed (DE) in seroconverting children. Gene expression signatures associated with seroconversion were evident during the first year of life, with 67 DE genes identified in seroconverting children relative to those remaining antibody negative. These genes contribute to T cell–, DC-, and B cell–related immune responses. Near-birth expression of ADCY9, PTCH1, MEX3B, IL15RA, ZNF714, TENM1, and PLEKHA5, along with HLA risk score predicted seroconversion (AUC 0.85). The ubiquitin-proteasome pathway linked DE genes and T1D susceptibility genes. Therefore, a gene expression signature in infancy predicts risk of seroconversion. Ubiquitination may play a mechanistic role in diabetes progression. PMID:29515040

  1. Earthquake-driven fluid flow rates inferred from borehole temperature measurements within the Japan Trench plate boundary fault zone

    NASA Astrophysics Data System (ADS)

    Fulton, P. M.; Brodsky, E. E.

    2016-12-01

    Using borehole sub-seafloor temperature measurements, we have recently identified signatures suggestive of earthquake-driven fluid pulses within the Japan Trench plate boundary fault zone during a major aftershock sequence. Here we use numerical models to show that these signatures are consistent with time-varying fluid flow rates out of permeable zones within the formation into the borehole annulus. In addition, we also identify an apparent time-varying sensitivity of whether suspected fluid pulses occur in response to earthquakes of a given magnitude and distance. The results suggest a damage and healing process and therefore provides a mechanism to allow for a disproportionate amount of heat and chemical transport in the short time frame after an earthquake. Our observations come from an observatory installed across the main plate boundary fault as part of IODP's Japan Trench Fast Drilling Project (JFAST) following the March 2011 Mw 9.0 Tohoku-oki earthquake. It operated from July 2012 - April 2013 during which a Mw 7.3 earthquake and numerous aftershocks occurred. High-resolution temperature time series data reveal spatially correlated transients in response to earthquakes with distinct patterns interpreted to reflect advection by transient pulses of fluid flow from permeable zones into the borehole annulus. Typical transients involve perturbations over 12 m with increases of 10 mK that build over 0.1 days at shallower depths and decreases at deeper depths. They are consistently centered around 792.5 m below seafloor (mbsf) where a secondary fault and permeable zone have been independently identified within the damage zone above the main plate boundary fault at 820 mbsf . Model simulations suggest transient flow rates of up to 10-3m/s from the formation that quickly decrease. Comparison of characteristics of earthquakes identified in nearby ocean bottom pressure measurements suggest there is not a clear relationship between fluid pulses and static strain. There

  2. K-RasG12D–induced T-cell lymphoblastic lymphoma/leukemias harbor Notch1 mutations and are sensitive to γ-secretase inhibitors

    PubMed Central

    Cornejo, Melanie G.; Scholl, Claudia; Liu, Jianing; Leeman, Dena S.; Haydu, J. Erika; Fröhling, Stefan; Lee, Benjamin H.; Gilliland, D. Gary

    2008-01-01

    To study the impact of oncogenic K-Ras on T-cell leukemia/lymphoma development and progression, we made use of a conditional K-RasG12D murine knockin model, in which oncogenic K-Ras is expressed from its endogenous promoter. Transplantation of whole bone marrow cells that express oncogenic K-Ras into wild-type recipient mice resulted in a highly penetrant, aggressive T-cell leukemia/lymphoma. The lymphoblasts were composed of a CD4/CD8 double-positive population that aberrantly expressed CD44. Thymi of primary donor mice showed reduced cellularity, and immunophenotypic analysis demonstrated a block in differentiation at the double-negative 1 stage. With progression of disease, approximately 50% of mice acquired Notch1 mutations within the PEST domain. Of note, primary lymphoblasts were hypersensitive to γ-secretase inhibitor treatment, which is known to impair Notch signaling. This inhibition was Notch-specific as assessed by down-regulation of Notch1 target genes and intracellular cleaved Notch. We also observed that the oncogenic K-Ras-induced T-cell disease was responsive to rapamycin and inhibitors of the RAS/MAPK pathway. These data indicate that patients with T-cell leukemia with K-Ras mutations may benefit from therapies that target the NOTCH pathway alone or in combination with inhibition of the PI3K/AKT/MTOR and RAS/MAPK pathways. PMID:18663146

  3. Coupled grain boundary motion in aluminium: the effect of structural multiplicity

    NASA Astrophysics Data System (ADS)

    Cheng, Kuiyu; Zhang, Liang; Lu, Cheng; Tieu, Kiet

    2016-05-01

    The shear-induced coupled grain boundary motion plays an important role in the deformation of nanocrystalline (NC) materials. It has been known that the atomic structure of the grain boundary (GB) is not necessarily unique for a given set of misorientation and inclination of the boundary plane. However, the effect of the structural multiplicity of the GB on its coupled motion has not been reported. In the present study we investigated the structural multiplicity of the symmetric tilt Σ5(310) boundary in aluminium and its influence on the GB behaviour at a temperature range of 300 K-600 K using molecular dynamic simulations. Two starting atomic configurations were adopted in the simulations which resulted in three different GB structures at different temperatures. Under the applied shear deformation each GB structure exhibited its unique GB behaviour. A dual GB behaviour, namely the transformation of one GB behaviour to another during deformation, was observed for the second starting configuration at a temperature of 500 K. The atomistic mechanisms responsible for these behaviour were analysed in detail. The result of this study implicates a strong relationship between GB structures and their behaviour, and provides a further information of the grain boundary mediated plasticity in nanocrystalline materials.

  4. Spin-orbit signatures in the dynamics of singlet-triplet qubits in double quantum dots

    NASA Astrophysics Data System (ADS)

    Rolon, Juan E.; Cota, Ernesto; Ulloa, Sergio E.

    2017-05-01

    We characterize numerically and analytically the signatures of the spin-orbit interaction in a two-electron GaAs double quantum dot in the presence of an external magnetic field. In particular, we obtain the return probability of the singlet state by simulating Landau-Zener voltage detuning sweeps which traverse the singlet-triplet (S -T+ ) resonance. Our results indicate that non-spin-conserving interdot tunneling processes arising from the spin-orbit interaction have well defined signatures. These allow direct access to the spin-orbit interaction scales and are characterized by a frequency shift and Fourier amplitude modulation of the Rabi flopping dynamics of the singlet-triplet qubits S -T0 and S -T+ . By applying the Bloch-Feshbach projection formalism, we demonstrate analytically that the aforementioned effects originate from the interplay between spin-orbit interaction and processes driven by the hyperfine interaction between the electron spins and those of the GaAs nuclei.

  5. Signature extension studies

    NASA Technical Reports Server (NTRS)

    Vincent, R. K.; Thomas, G. S.; Nalepka, R. F.

    1974-01-01

    The importance of specific spectral regions to signature extension is explored. In the recent past, the signature extension task was focused on the development of new techniques. Tested techniques are now used to investigate this spectral aspect of the large area survey. Sets of channels were sought which, for a given technique, were the least affected by several sources of variation over four data sets and yet provided good object class separation on each individual data set. Using sets of channels determined as part of this study, signature extension was accomplished between data sets collected over a six-day period and over a range of about 400 kilometers.

  6. NMR characterization of sulphur substitution effects in the K xFe 2-ySe 2-zS z high-T c superconductor

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Torchetti, D. A.; Imai, T.; Lei, H. C.

    2012-04-17

    We present a⁷⁷ Se NMR study of the effect of S substitution in the high-T c superconductor K xFe 2-ySe 2-zS z in a temperature range up to 250 K. We examine two S concentrations, with z=0.8 (Tc~ 26 K) and z=1.6 (nonsuperconducting). The samples containing sulphur exhibit broader NMR line shapes than the K xFe₂Se₂ sample due to local disorder in the Se environment. Our Knight shift ⁷⁷K data indicate that in all samples, uniform spin susceptibility decreases with temperature, and that the magnitude of the Knight shift itself decreases with increased S concentration. In addition, S substitution progressivelymore » suppresses low-frequency spin fluctuations. None of the samples exhibit an enhancement of low-frequency antiferromagnetic spin fluctuations near T c in 1/T₁T, as seen in FeSe.« less

  7. Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.

    PubMed

    Forslund, Kristoffer; Hildebrand, Falk; Nielsen, Trine; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara; Gudmundsdottir, Valborg; Pedersen, Helle K; Arumugam, Manimozhiyan; Kristiansen, Karsten; Voigt, Anita Yvonne; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Dore, Joël; Nielsen, H Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S Dusko; Bork, Peer; Pedersen, Oluf

    2015-12-10

    In recent years, several associations between common chronic human disorders and altered gut microbiome composition and function have been reported. In most of these reports, treatment regimens were not controlled for and conclusions could thus be confounded by the effects of various drugs on the microbiota, which may obscure microbial causes, protective factors or diagnostically relevant signals. Our study addresses disease and drug signatures in the human gut microbiome of type 2 diabetes mellitus (T2D). Two previous quantitative gut metagenomics studies of T2D patients that were unstratified for treatment yielded divergent conclusions regarding its associated gut microbial dysbiosis. Here we show, using 784 available human gut metagenomes, how antidiabetic medication confounds these results, and analyse in detail the effects of the most widely used antidiabetic drug metformin. We provide support for microbial mediation of the therapeutic effects of metformin through short-chain fatty acid production, as well as for potential microbiota-mediated mechanisms behind known intestinal adverse effects in the form of a relative increase in abundance of Escherichia species. Controlling for metformin treatment, we report a unified signature of gut microbiome shifts in T2D with a depletion of butyrate-producing taxa. These in turn cause functional microbiome shifts, in part alleviated by metformin-induced changes. Overall, the present study emphasizes the need to disentangle gut microbiota signatures of specific human diseases from those of medication.

  8. Evolution of Grain Boundary Precipitates in an Al-Cu-Li Alloy During Aging

    NASA Astrophysics Data System (ADS)

    Ott, Noémie; Kairy, Shravan K.; Yan, Yuanming; Birbilis, Nick

    2017-01-01

    The grain boundary microstructure of Al-Cu-Li alloy AA2050 was investigated for different isothermal aging times to rationalize intergranular corrosion (IGC) characteristics. In the underaged condition, the dominant grain boundary precipitates are fine T1 (Al2CuLi). Extended aging revealed that grain boundaries were decorated by large T1 precipitates and S' phase (Al2CuMg), with S' growth not dimensionally constrained. Such a transition in the precipitate type at grain boundaries is a unique feature of the Al-Cu-Li system.

  9. Harnessing Technology to Improve K-12 Education. Discussion Paper 2012-05

    ERIC Educational Resources Information Center

    Chatterji, Aaron; Jones, Benjamin

    2012-01-01

    Technological progress has consistently driven remarkable advances in the U.S. economy, yet K-12 education sees little technological change compared to other sectors, even as U.S. K-12 students increasingly lag behind students in other nations. This proposal considers how we can take a signature American strength--innovation--and apply it to K-12…

  10. Sub-kT/q subthreshold slope p-metal-oxide-semiconductor field-effect transistors with single-grained Pb(Zr,Ti)O3 featuring a highly reliable negative capacitance

    NASA Astrophysics Data System (ADS)

    Park, Jae Hyo; Joo, Seung Ki

    2016-03-01

    A reliable on/off switching with an sub-kT/q subthreshold slope (38 mV/dec at room temperature) is experimentally demonstrated with using selectively nucleated laterally crystallized single-grain Pb(Zr,Ti)O3 (PZT) ferroelectric and ZrTiO4 paraelectric thin-film. The combination of ferroelectric and paraelectric thin-film is enabled to form a negative capacitance (NC) at the weak inversion region. However, the PZT grain-boundary easily degrades the NC properties after switching the on/off more than 108 times. It is found that the polarization of PZT is diminished from the path of grain-boundary. Here, we effectively suppress the degradation of NC MOS-FET which did not showed any fatigue even after 108 on/off switching. At the request of the authors this article is retracted due to duplication of figures and significant overlap with other publications by the authors and because of concerns about the accuracy of the description of the devices and materials from which the reported results were obtained. The authors recognize that these represent serious errors and sincerely apologize for any inconvenience they may have caused. The article is retracted from the scientific record with effect from 17 February 2017.

  11. ANGPTL4 E40K and T266M: effects on plasma triglyceride and HDL levels, postprandial responses, and CHD risk.

    PubMed

    Talmud, Philippa J; Smart, Melissa; Presswood, Edward; Cooper, Jackie A; Nicaud, Viviane; Drenos, Fotios; Palmen, Jutta; Marmot, Michael G; Boekholdt, S Matthijs; Wareham, Nicholas J; Khaw, Kay-Tee; Kumari, Meena; Humphries, Steve E

    2008-12-01

    Angiopoietin-like 4 is a dual-function protein: an inhibitor of LPL, influencing plasma triglycerides (TGs), with angiogenic properties. We examined the association of common ANGPTL4 variants with CHD traits and risk in 5 studies (13,527 individuals). The effects on plasma lipids of 6 tagging SNPs and the recently identified E40K were examined in a study of 2772 men. Only T266M (rs1044250, MAF=30%) and E40K (MAF=2%) were significantly associated with TG-lowering (-10.4%, P<0.004 and -20.4%, P<0.0001), respectively. T266M no longer showed significant associations when K40 carriers (K40+) were excluded (P=0.2). Combining data from 5 studies confirmed the TG-lowering effect of K40+ (weighted mean difference: -0.12 [95% CI -0.18, -0.05] mmol/L TG P=0.0001). Surprisingly, in the 3 prospective studies, the combined OR for CHD was 1.48 (1.11 to 1.96, P=0.007), independent of TG. In individuals with a paternal history of MI (n=332) T266M, but not E40K, showed effects on postprandial AUC TG and glucose (P=0.009 and P=0.017, respectively) compared to controls (n=370). Although associated with an atheroprotective lipid profile, E40K was associated with increased CHD risk, suggesting Angptl4 influences parameters beyond lipid levels. T266M showed effects only under conditions of postprandial stress. The functionality of these potential "loss-of-function" variants needs validation.

  12. Characterization and discrimination of large caliber gun blast and flash signatures

    NASA Astrophysics Data System (ADS)

    Steward, Bryan J.

    Two hundred and one firings of three 152 mm howitzer munitions were observed to characterize firing signatures of a large caliber gun. Muzzle blast expansion was observed with high-speed (1600 Hz) optical imagery. The trajectory of the blast front was well approximated by a modified point-blast model described by constant rate of energy deposition. Visible and near-infrared (450--850 nm) spectra of secondary combustion were acquired at ˜0.75 nm spectral resolution and depict strong contaminant emissions including Li, Na, K, Cu, and Ca. The O2 (X→b) absorption band is evident in the blue wing of the potassium D lines and was used for monocular passive ranging accurate to within 4--9%. Time-resolved midwave infrared (1800--6000 cm-1) spectra were collected at 100 Hz and 32 cm-1 resolution. A low dimensional radiative transfer model was used to characterize plume emissions in terms of area, temperature, soot emissivity, and species concentrations. Combustion emissions have ~100 ms duration, 1200--1600 K temperature, and are dominated by H2O and CO2. Non-combusting plume emissions last ~20 ms, are 850--1050 K, and show significant continuum (emissivity ˜0.36) and CO structure. Munitions were discriminated with 92--96% classification accuracy using only 1--3 firing signature features.

  13. Signatures of spin-orbital states of t2g 2 system in optical conductivity: R VO3 (R =Y and La)

    NASA Astrophysics Data System (ADS)

    Kim, Minjae

    2018-04-01

    We investigate signatures of the spin and orbital states of R VO3 (R =Y and La) in optical conductivity using density functional theory plus dynamical mean-field theory (DFT+DMFT). From the assignment of multiplet state configurations to optical transitions, the DFT+DMFT reproduces experimental temperature-dependent evolutions of optical conductivity for both YVO3 and LaVO3. We also show that the optical conductivity is a useful quantity to probe the evolution of the orbital state even in the absence of spin order. The result provides a reference to investigate the spin and orbital states of t2g 2 vanadate systems, which is an important issue for both fundamental physics on spin and orbital states and applications of vanadates by means of orbital state control.

  14. Steady Boundary Layer Disturbances Created By Two-Dimensional Surface Ripples

    NASA Astrophysics Data System (ADS)

    Kuester, Matthew

    2017-11-01

    Multiple experiments have shown that surface roughness can enhance the growth of Tollmien-Schlichting (T-S) waves in a laminar boundary layer. One of the common observations from these studies is a ``wall displacement'' effect, where the boundary layer profile shape remains relatively unchanged, but the origin of the profile pushes away from the wall. The objective of this work is to calculate the steady velocity field (including this wall displacement) of a laminar boundary layer over a surface with small, 2D surface ripples. The velocity field is a combination of a Blasius boundary layer and multiple disturbance modes, calculated using the linearized Navier-Stokes equations. The method of multiple scales is used to include non-parallel boundary layer effects of O (Rδ- 1) ; the non-parallel terms are necessary, because a wall displacement is mathematically inconsistent with a parallel boundary layer assumption. This technique is used to calculate the steady velocity field over ripples of varying height and wavelength, including cases where a separation bubble forms on the leeward side of the ripple. In future work, the steady velocity field will be the input for stability calculations, which will quantify the growth of T-S waves over rough surfaces. The author would like to acknowledge the support of the Kevin T. Crofton Aerospace & Ocean Engineering Department at Virginia Tech.

  15. Inhibition of the K+ channel KCa3.1 ameliorates T cell-mediated colitis.

    PubMed

    Di, Lie; Srivastava, Shekhar; Zhdanova, Olga; Ding, Yi; Li, Zhai; Wulff, Heike; Lafaille, Maria; Skolnik, Edward Y

    2010-01-26

    The calcium-activated K(+) channel KCa3.1 plays an important role in T lymphocyte Ca(2+) signaling by helping to maintain a negative membrane potential, which provides an electrochemical gradient to drive Ca(2+) influx. To assess the role of KCa3.1 channels in lymphocyte activation in vivo, we studied T cell function in KCa3.1(-/-) mice. CD4 T helper (i.e., Th0) cells isolated from KCa3.1(-/-) mice lacked KCa3.1 channel activity, which resulted in decreased T cell receptor-stimulated Ca(2+) influx and IL-2 production. Although loss of KCa3.1 did not interfere with CD4 T cell differentiation, both Ca(2+) influx and cytokine production were impaired in KCa3.1(-/-) Th1 and Th2 CD4 T cells, whereas T-regulatory and Th17 function were normal. We found that inhibition of KCa3.1(-/-) protected mice from developing severe colitis in two mouse models of inflammatory bowel disease, which were induced by (i) the adoptive transfer of mouse naïve CD4 T cells into rag2(-/-) recipients and (ii) trinitrobenzene sulfonic acid. Pharmacologic inhibitors of KCa3.1 have already been shown to be safe in humans. Thus, if these preclinical studies continue to show efficacy, it may be possible to rapidly test whether KCa3.1 inhibitors are efficacious in patients with inflammatory bowel diseases such as Crohn's disease and ulcerative colitis.

  16. Higgs production via gluon fusion in k{sub T} factorisation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hautmann, F.; Jung, H.; Pandis, V.

    2011-07-15

    Theoretical studies of Higgs production via gluon fusion are frequently carried out in the limit where the top quark mass is much larger than the Higgs mass, an approximation which reduces the top quark loop to an effective vertex. We present a numerical analysis of the error thus introduced by performing a Monte Carlo calculation for gg{yields}h in k{sub T}-factorisation, using the parton shower generator CASCADE. By examining both inclusive and exclusive quantities, we find that retaining the top-mass dependence results in only a small enhancement of the cross-section. We then proceed to compare CASCADE to the collinear Monte Carlosmore » PYTHIA, MC-NLO and POWHEG.« less

  17. Turbulent Helicity in the Atmospheric Boundary Layer

    NASA Astrophysics Data System (ADS)

    Chkhetiani, Otto G.; Kurgansky, Michael V.; Vazaeva, Natalia V.

    2018-05-01

    We consider the assumption postulated by Deusebio and Lindborg (J Fluid Mech 755:654-671, 2014) that the helicity injected into the Ekman boundary layer undergoes a cascade, with preservation of its sign (right- or alternatively left-handedness), which is a signature of the system rotation, from large to small scales, down to the Kolmogorov microscale of turbulence. At the same time, recent direct field measurements of turbulent helicity in the steppe region of southern Russia near Tsimlyansk Reservoir show the opposite sign of helicity from that expected. A possible explanation for this phenomenon may be the joint action of different scales of atmospheric flows within the boundary layer, including the sea-breeze circulation over the test site. In this regard, we consider a superposition of the classic Ekman spiral solution and Prandtl's jet-like slope-wind profile to describe the planetary boundary-layer wind structure. The latter solution mimics a hydrostatic shallow breeze circulation over a non-uniformly heated surface. A 180°-wide sector on the hodograph plane exists, within which the relative orientation of the Ekman and Prandtl velocity profiles favours the left rotation with height of the resulting wind velocity vector in the lowermost part of the boundary layer. This explains the negative (left-handed) helicity cascade toward small-scale turbulent motions, which agrees with the direct field measurements of turbulent helicity in Tsimlyansk. A simple turbulent relaxation model is proposed that explains the measured positive values of the relatively minor contribution to turbulent helicity from the vertical components of velocity and vorticity.

  18. Involvement of Escherichia coli K1 ibeT in bacterial adhesion that is associated with the entry into human brain microvascular endothelial cells.

    PubMed

    Zou, Yanming; He, Lina; Chi, Feng; Jong, Ambrose; Huang, Sheng-He

    2008-12-01

    IbeT is a downstream gene of the invasion determinant ibeA in the chromosome of a clinical isolate of Escherichia coli K1 strain RS218 (serotype 018:K1:H7). Both ibeT and ibeA are in the same operon. Our previous mutagenesis and complementation studies suggested that ibeT may coordinately contribute to E. coli K1 invasion with ibeA. An isogenic in-frame deletion mutant of ibeT has been made by chromosomal gene replacement with a recombinant suicide vector carrying a fragment with an ibeT internal deletion. The characteristics of the mutant in meningitic E. coli infection were examined in vitro [cell culture of human brain microvascular endothelial cells (HBMEC)] and in vivo (infant rat model of E. coli meningitis) in comparison with the parent strain. The ibeT deletion mutant was significantly less adhesive and invasive than its parent strain E. coli E44 in vitro, and the adhesion- and invasion-deficient phenotypes of the mutant can be complemented by the ibeT gene. Recombinant IbeT protein is able to block E. coli E44 invasion of HBMEC. Furthermore, the ibeT deletion mutant is less capable of colonizing intestine and less virulent in bacterial translocation across the blood-brain barrier (BBB) than its parent E. coli E44 in vivo. These data suggest that ibeT-mediated E. coli K1 adhesion is associated with the bacterial invasion process.

  19. Crystal growth and annealing study of fragile, non-bulk superconductivity in YFe 2Ge 2

    DOE PAGES

    Kim, H.; Ran, S.; Mun, E. D.; ...

    2015-02-05

    In this study, we investigated the occurrence and nature of superconductivity in single crystals of YFe 2Ge 2 grown out of Sn flux by employing X-ray diffraction, electrical resistivity and specific heat measurements. We found that the residual resistivity ratio (RRR) of single crystals can be greatly improved, reaching as high as ~60, by decanting the crystals from the molten Sn at ~350°C and/or by annealing at temperatures between 550°C and 600°C. We found that the samples with RRR ≳ 34 showed resistive signatures of superconductivity with the onset of the superconducting transition T c ≈ 1.4K. RRR values varymore » between 35 and 65 with, on average, no systematic change in value T c, indicating that the systematic changes in RRR do not lead to comparable changes in T c. Specific heat measurements on samples that showed the clear resistive signatures of a superconducting transition did not show any signature of a superconducting phase transition, which suggests that the superconductivity observed in this compound is either some sort of filamentary, strain-stabilized superconductivity associated with small amounts of stressed YFe 2Ge 2 (perhaps at twin boundaries or dislocations) or is a second crystallographic phase that is present at level below detection capability of conventional powder X-ray techniques.« less

  20. Lesson 6: Signature Validation

    EPA Pesticide Factsheets

    Checklist items 13 through 17 are grouped under the Signature Validation Process, and represent CROMERR requirements that the system must satisfy as part of ensuring that electronic signatures it receives are valid.

  1. 21 CFR 11.50 - Signature manifestations.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 1 2010-04-01 2010-04-01 false Signature manifestations. 11.50 Section 11.50 Food... RECORDS; ELECTRONIC SIGNATURES Electronic Records § 11.50 Signature manifestations. (a) Signed electronic...: (1) The printed name of the signer; (2) The date and time when the signature was executed; and (3...

  2. 1978 Diffuse Auroral Boundaries and a Derived Auroral Boundary Index

    DTIC Science & Technology

    1982-12-28

    they have nothing to do with the auroral precipitation, they must be differentiated from the auroral electrons when determining boundaries. Due to the...47.8 -54.6 -61.4 -68.0 -74.2 -79.4 -81.7 -78.9 -73.5 - 7.2 -60.6 GLON 121.0 118.5 115 S 1114 105.3 95.0 74.69 37.7 352.2 332.? 323:.1 317:3 M1LAY -56.2...1IN NN 1 1 NI M- I II- IN - N1 C , S~li-o N nol- O) N.010 DTN440 W00CO0 10011aN IIU0 )0 r,0 0 N0 t N1e . 0 MC0t)O0 r- ,J o 110 00 toC 0 0010 01 0t n 1

  3. Use of mRNA expression signatures to discover small molecule inhibitors of skeletal muscle atrophy

    PubMed Central

    Adams, Christopher M.; Ebert, Scott M.; Dyle, Michael C.

    2017-01-01

    Purpose of review Here, we discuss a recently developed experimental strategy for discovering small molecules with potential to prevent and treat skeletal muscle atrophy. Recent findings Muscle atrophy involves and requires widespread changes in skeletal muscle gene expression, which generate complex but measurable patterns of positive and negative changes in skeletal muscle mRNA levels (a.k.a. mRNA expression signatures of muscle atrophy). Many bioactive small molecules generate their own characteristic mRNA expression signatures, and by identifying small molecules whose signatures approximate mirror images of muscle atrophy signatures, one may identify small molecules with potential to prevent and/or reverse muscle atrophy. Unlike a conventional drug discovery approach, this strategy does not rely on a predefined molecular target but rather exploits the complexity of muscle atrophy to identify small molecules that counter the entire spectrum of pathological changes in atrophic muscle. We discuss how this strategy has been used to identify two natural compounds, ursolic acid and tomatidine, that reduce muscle atrophy and improve skeletal muscle function. Summary Discovery strategies based on mRNA expression signatures can elucidate new approaches for preserving and restoring muscle mass and function. PMID:25807353

  4. Use of mRNA expression signatures to discover small molecule inhibitors of skeletal muscle atrophy.

    PubMed

    Adams, Christopher M; Ebert, Scott M; Dyle, Michael C

    2015-05-01

    Here, we discuss a recently developed experimental strategy for discovering small molecules with potential to prevent and treat skeletal muscle atrophy. Muscle atrophy involves and requires widespread changes in skeletal muscle gene expression, which generate complex but measurable patterns of positive and negative changes in skeletal muscle mRNA levels (a.k.a. mRNA expression signatures of muscle atrophy). Many bioactive small molecules generate their own characteristic mRNA expression signatures, and by identifying small molecules whose signatures approximate mirror images of muscle atrophy signatures, one may identify small molecules with potential to prevent and/or reverse muscle atrophy. Unlike a conventional drug discovery approach, this strategy does not rely on a predefined molecular target but rather exploits the complexity of muscle atrophy to identify small molecules that counter the entire spectrum of pathological changes in atrophic muscle. We discuss how this strategy has been used to identify two natural compounds, ursolic acid and tomatidine, that reduce muscle atrophy and improve skeletal muscle function. Discovery strategies based on mRNA expression signatures can elucidate new approaches for preserving and restoring muscle mass and function.

  5. Search for new physics with a dijet plus missing E(T) signature in pp collisions at √s=1.96  TeV.

    PubMed

    Aaltonen, T; Adelman, J; Alvarez González, B; Amerio, S; Amidei, D; Anastassov, A; Annovi, A; Antos, J; Apollinari, G; Apresyan, A; Arisawa, T; Artikov, A; Asaadi, J; Ashmanskas, W; Attal, A; Aurisano, A; Azfar, F; Badgett, W; Barbaro-Galtieri, A; Barnes, V E; Barnett, B A; Barria, P; Bartos, P; Bauer, G; Beauchemin, P-H; Bedeschi, F; Beecher, D; Behari, S; Bellettini, G; Bellinger, J; Benjamin, D; Beretvas, A; Bhatti, A; Binkley, M; Bisello, D; Bizjak, I; Blair, R E; Blocker, C; Blumenfeld, B; Bocci, A; Bodek, A; Boisvert, V; Bortoletto, D; Boudreau, J; Boveia, A; Brau, B; Bridgeman, A; Brigliadori, L; Bromberg, C; Brubaker, E; Budagov, J; Budd, H S; Budd, S; Burkett, K; Busetto, G; Bussey, P; Buzatu, A; Byrum, K L; Cabrera, S; Calancha, C; Camarda, S; Campanelli, M; Campbell, M; Canelli, F; Canepa, A; Carls, B; Carlsmith, D; Carosi, R; Carrillo, S; Carron, S; Casal, B; Casarsa, M; Castro, A; Catastini, P; Cauz, D; Cavaliere, V; Cavalli-Sforza, M; Cerri, A; Cerrito, L; Chang, S H; Chen, Y C; Chertok, M; Chiarelli, G; Chlachidze, G; Chlebana, F; Cho, K; Chokheli, D; Chou, J P; Chung, K; Chung, W H; Chung, Y S; Chwalek, T; Ciobanu, C I; Ciocci, M A; Clark, A; Clark, D; Compostella, G; Convery, M E; Conway, J; Corbo, M; Cordelli, M; Cox, C A; Cox, D J; Crescioli, F; Cuenca Almenar, C; Cuevas, J; Culbertson, R; Cully, J C; Dagenhart, D; Datta, M; Davies, T; de Barbaro, P; De Cecco, S; Deisher, A; De Lorenzo, G; Dell'orso, M; Deluca, C; Demortier, L; Deng, J; Deninno, M; d'Errico, M; Deviveiros, P-O; Di Canto, A; di Giovanni, G P; Di Ruzza, B; Dittmann, J R; D'Onofrio, M; Donati, S; Dong, P; Dorigo, T; Dube, S; Ebina, K; Elagin, A; Erbacher, R; Errede, D; Errede, S; Ershaidat, N; Eusebi, R; Fang, H C; Farrington, S; Fedorko, W T; Feild, R G; Feindt, M; Fernandez, J P; Ferrazza, C; Field, R; Flanagan, G; Forrest, R; Frank, M J; Franklin, M; Freeman, J C; Furic, I; Gallinaro, M; Galyardt, J; Garberson, F; Garcia, J E; Garfinkel, A F; Garosi, P; Gerberich, H; Gerdes, D; Gessler, A; Giagu, S; Giakoumopoulou, V; Giannetti, P; Gibson, K; Gimmell, J L; Ginsburg, C M; Giokaris, N; Giordani, M; Giromini, P; Giunta, M; Giurgiu, G; Glagolev, V; Glenzinski, D; Gold, M; Goldschmidt, N; Golossanov, A; Gomez, G; Gomez-Ceballos, G; Goncharov, M; González, O; Gorelov, I; Goshaw, A T; Goulianos, K; Gresele, A; Grinstein, S; Grosso-Pilcher, C; Grundler, U; Guimaraes da Costa, J; Gunay-Unalan, Z; Haber, C; Hahn, S R; Halkiadakis, E; Han, B-Y; Han, J Y; Happacher, F; Hara, K; Hare, D; Hare, M; Harr, R F; Hartz, M; Hatakeyama, K; Hays, C; Heck, M; Heinrich, J; Herndon, M; Heuser, J; Hewamanage, S; Hidas, D; Hill, C S; Hirschbuehl, D; Hocker, A; Hou, S; Houlden, M; Hsu, S-C; Hughes, R E; Hurwitz, M; Husemann, U; Hussein, M; Huston, J; Incandela, J; Introzzi, G; Iori, M; Ivanov, A; James, E; Jang, D; Jayatilaka, B; Jeon, E J; Jha, M K; Jindariani, S; Johnson, W; Jones, M; Joo, K K; Jun, S Y; Jung, J E; Junk, T R; Kamon, T; Kar, D; Karchin, P E; Kato, Y; Kephart, R; Ketchum, W; Keung, J; Khotilovich, V; Kilminster, B; Kim, D H; Kim, H S; Kim, H W; Kim, J E; Kim, M J; Kim, S B; Kim, S H; Kim, Y K; Kimura, N; Kirsch, L; Klimenko, S; Kondo, K; Kong, D J; Konigsberg, J; Korytov, A; Kotwal, A V; Kreps, M; Kroll, J; Krop, D; Krumnack, N; Kruse, M; Krutelyov, V; Kuhr, T; Kulkarni, N P; Kurata, M; Kwang, S; Laasanen, A T; Lami, S; Lammel, S; Lancaster, M; Lander, R L; Lannon, K; Lath, A; Latino, G; Lazzizzera, I; Lecompte, T; Lee, E; Lee, H S; Lee, J S; Lee, S W; Leone, S; Lewis, J D; Lin, C-J; Linacre, J; Lindgren, M; Lipeles, E; Lister, A; Litvintsev, D O; Liu, C; Liu, T; Lockyer, N S; Loginov, A; Lovas, L; Lucchesi, D; Lueck, J; Lujan, P; Lukens, P; Lungu, G; Lys, J; Lysak, R; Macqueen, D; Madrak, R; Maeshima, K; Makhoul, K; Maksimovic, P; Malde, S; Malik, S; Manca, G; Manousakis-Katsikakis, A; Margaroli, F; Marino, C; Marino, C P; Martin, A; Martin, V; Martínez, M; Martínez-Ballarín, R; Mastrandrea, P; Mathis, M; Mattson, M E; Mazzanti, P; McFarland, K S; McIntyre, P; McNulty, R; Mehta, A; Mehtala, P; Menzione, A; Mesropian, C; Miao, T; Mietlicki, D; Miladinovic, N; Miller, R; Mills, C; Milnik, M; Mitra, A; Mitselmakher, G; Miyake, H; Moed, S; Moggi, N; Mondragon, M N; Moon, C S; Moore, R; Morello, M J; Morlock, J; Movilla Fernandez, P; Mülmenstädt, J; Mukherjee, A; Muller, Th; Murat, P; Mussini, M; Nachtman, J; Nagai, Y; Naganoma, J; Nakamura, K; Nakano, I; Napier, A; Nett, J; Neu, C; Neubauer, M S; Neubauer, S; Nielsen, J; Nodulman, L; Norman, M; Norniella, O; Nurse, E; Oakes, L; Oh, S H; Oh, Y D; Oksuzian, I; Okusawa, T; Orava, R; Osterberg, K; Pagan Griso, S; Pagliarone, C; Palencia, E; Papadimitriou, V; Papaikonomou, A; Paramanov, A A; Parks, B; Pashapour, S; Patrick, J; Pauletta, G; Paulini, M; Paus, C; Peiffer, T; Pellett, D E; Penzo, A; Phillips, T J; Piacentino, G; Pianori, E; Pinera, L; Pitts, K; Plager, C; Pondrom, L; Potamianos, K; Poukhov, O; Prokoshin, F; Pronko, A; Ptohos, F; Pueschel, E; Punzi, G; Pursley, J; Rademacker, J; Rahaman, A; Ramakrishnan, V; Ranjan, N; Redondo, I; Renton, P; Renz, M; Rescigno, M; Richter, S; Rimondi, F; Ristori, L; Robson, A; Rodrigo, T; Rodriguez, T; Rogers, E; Rolli, S; Roser, R; Rossi, M; Rossin, R; Roy, P; Ruiz, A; Russ, J; Rusu, V; Rutherford, B; Saarikko, H; Safonov, A; Sakumoto, W K; Santi, L; Sartori, L; Sato, K; Savard, P; Savoy-Navarro, A; Schlabach, P; Schmidt, A; Schmidt, E E; Schmidt, M A; Schmidt, M P; Schmitt, M; Schwarz, T; Scodellaro, L; Scribano, A; Scuri, F; Sedov, A; Seidel, S; Seiya, Y; Semenov, A; Sexton-Kennedy, L; Sforza, F; Sfyrla, A; Shalhout, S Z; Shears, T; Shepard, P F; Shimojima, M; Shiraishi, S; Shochet, M; Shon, Y; Shreyber, I; Simonenko, A; Sinervo, P; Sisakyan, A; Slaughter, A J; Slaunwhite, J; Sliwa, K; Smith, J R; Snider, F D; Snihur, R; Soha, A; Somalwar, S; Sorin, V; Squillacioti, P; Stanitzki, M; St Denis, R; Stelzer, B; Stelzer-Chilton, O; Stentz, D; Strologas, J; Strycker, G L; Suh, J S; Sukhanov, A; Suslov, I; Taffard, A; Takashima, R; Takeuchi, Y; Tanaka, R; Tang, J; Tecchio, M; Teng, P K; Thom, J; Thome, J; Thompson, G A; Thomson, E; Tipton, P; Ttito-Guzmán, P; Tkaczyk, S; Toback, D; Tokar, S; Tollefson, K; Tomura, T; Tonelli, D; Torre, S; Torretta, D; Totaro, P; Tourneur, S; Trovato, M; Tsai, S-Y; Tu, Y; Turini, N; Ukegawa, F; Uozumi, S; van Remortel, N; Varganov, A; Vataga, E; Vázquez, F; Velev, G; Vellidis, C; Vidal, M; Vila, I; Vilar, R; Vogel, M; Volobouev, I; Volpi, G; Wagner, P; Wagner, R G; Wagner, R L; Wagner, W; Wagner-Kuhr, J; Wakisaka, T; Wallny, R; Wang, S M; Warburton, A; Waters, D; Weinberger, M; Weinelt, J; Wester, W C; Whitehouse, B; Whiteson, D; Wicklund, A B; Wicklund, E; Wilbur, S; Williams, G; Williams, H H; Wilson, P; Winer, B L; Wittich, P; Wolbers, S; Wolfe, C; Wolfe, H; Wright, T; Wu, X; Würthwein, F; Yagil, A; Yamamoto, K; Yamaoka, J; Yang, U K; Yang, Y C; Yao, W M; Yeh, G P; Yi, K; Yoh, J; Yorita, K; Yoshida, T; Yu, G B; Yu, I; Yu, S S; Yun, J C; Zanetti, A; Zeng, Y; Zhang, X; Zheng, Y; Zucchelli, S

    2010-09-24

    We present results of a signature-based search for new physics using a dijet plus missing transverse energy (E(T)) data sample collected in 2  fb⁻¹ of pp collisions at √s=1.96  TeV with the CDF II detector at the Fermilab Tevatron. We observe no significant event excess with respect to the standard model prediction and extract a 95% C.L. upper limit on the cross section times acceptance for a potential contribution from a nonstandard model process. The search is made by using novel, data-driven techniques for estimating backgrounds that are applicable to first searches at the LHC.

  6. Quality of signatures. [spectral signatures of winter wheat grown in Texas

    NASA Technical Reports Server (NTRS)

    Kan, E. P. F.

    1974-01-01

    Three conclusions are drawn on the usability, inherent variations, and noise aspects of the spectral signatures processed from data collected by the Field Signature Acquisition System (FSAS). Conclusions are based on the spectral data collected from winter wheat of the 1972/73 season, grown at Texas A and M University, College Station, Texas.

  7. The Boundary Element Method Applied to the Two Dimensional Stefan Moving Boundary Problem

    DTIC Science & Technology

    1991-03-15

    Unc), - ( UGt )t - (UG,,),,] - (UG), If we integrate this equation with respect to r from 0 to t - c and with respect to and ij on the region 11(r...and others. "Moving Boundary Problems in Phase Change Mod- els," SIGNUM Newsletter, 20: 8-12 (1985). 21. Stefan, J. "Ober einige Probleme der Theorie ...ier Wirmelcitung," S.-B. \\Vein. Akad. Mat. Natur., 98: 173-484 (1889). 22.-. "flber (lie Theorie der Eisbildung insbesondere fiber die lisbildung im

  8. 7 CFR 97.155 - Signatures.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Signatures. 97.155 Section 97.155 Agriculture... PLANT VARIETY AND PROTECTION Attorneys and Agents § 97.155 Signatures. Every document filed by an attorney or agent representing an applicant or party to a proceeding in the Office shall bear the signature...

  9. 21 CFR 11.70 - Signature/record linking.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 1 2010-04-01 2010-04-01 false Signature/record linking. 11.70 Section 11.70 Food... RECORDS; ELECTRONIC SIGNATURES Electronic Records § 11.70 Signature/record linking. Electronic signatures and handwritten signatures executed to electronic records shall be linked to their respective...

  10. KM3NeT/ORCA status and plans

    NASA Astrophysics Data System (ADS)

    Samtleben, Dorothea F. E.

    2016-04-01

    Neutrinos created in interactions of cosmic rays with the atmosphere can serve as a powerful tool to unveil the neutrino mass hierarchy (NMH). At low energies, around a few GeV, matter effects from the transition through the Earth are expected to imprint a distinct but also subtle signature on the oscillation pattern, specific to the ordering of the neutrino masses. KM3NeT/ORCA (Oscillations Research with Cosmics in the Abyss), a densely instrumented building block of the upcoming KM3NeT neutrino telescope, will be designated to measuring this signature in the Mediterranean Sea. Using detailed simulations the sensitivity towards this signature has been evaluated. The multi-PMT detectors allow in the water for an accurate reconstruction of GeV neutrino event signatures and distinction of neutrino flavours. For the determination of the mass hierarchy a median significance of 2-6σ has been estimated for three years of data taking, depending on the actual hierarchy and the oscillation parameters. At the same time the values of several oscillation parameters like θ23 will be determined to unprecedented precision.

  11. Rejecting Non-MIP-Like Tracks using Boosted Decision Trees with the T2K Pi-Zero Subdetector

    NASA Astrophysics Data System (ADS)

    Hogan, Matthew; Schwehr, Jacklyn; Cherdack, Daniel; Wilson, Robert; T2K Collaboration

    2016-03-01

    Tokai-to-Kamioka (T2K) is a long-baseline neutrino experiment with a narrow band energy spectrum peaked at 600 MeV. The Pi-Zero detector (PØD) is a plastic scintillator-based detector located in the off-axis near detector complex 280 meters from the beam origin. It is designed to constrain neutral-current induced π0 production background at the far detector using the water target which is interleaved between scintillator layers. A PØD-based measurement of charged-current (CC) single charged pion (1π+) production on water is being developed which will have expanded phase space coverage as compared to the previous analysis. The signal channel for this analysis, which for T2K is dominated by Δ production, is defined as events that produce a single muon, single charged pion, and any number of nucleons in the final state. The analysis will employ machine learning algorithms to enhance CC1π+ selection by studying topological observables that characterize signal well. Important observables for this analysis are those that discriminate a minimum ionizing particle (MIP) like a muon or pion from a proton at the T2K energies. This work describes the development of a discriminator using Boosted Decision Trees to reject non-MIP-like PØD tracks.

  12. Genomic profiling of a Hepatocyte growth factor-dependent signature for MET-targeted therapy in glioblastoma.

    PubMed

    Johnson, Jennifer; Ascierto, Maria Libera; Mittal, Sandeep; Newsome, David; Kang, Liang; Briggs, Michael; Tanner, Kirk; Marincola, Francesco M; Berens, Michael E; Vande Woude, George F; Xie, Qian

    2015-09-17

    Constitutive MET signaling promotes invasiveness in most primary and recurrent GBM. However, deployment of available MET-targeting agents is confounded by lack of effective biomarkers for selecting suitable patients for treatment. Because endogenous HGF overexpression often causes autocrine MET activation, and also indicates sensitivity to MET inhibitors, we investigated whether it drives the expression of distinct genes which could serve as a signature indicating vulnerability to MET-targeted therapy in GBM. Interrogation of genomic data from TCGA GBM (Student's t test, GBM patients with high and low HGF expression, p ≤ 0.00001) referenced against patient-derived xenograft (PDX) models (Student's t test, sensitive vs. insensitive models, p ≤ 0.005) was used to identify the HGF-dependent signature. Genomic analysis of GBM xenograft models using both human and mouse gene expression microarrays (Student's t test, treated vs. vehicle tumors, p ≤ 0.01) were performed to elucidate the tumor and microenvironment cross talk. A PDX model with EGFR(amp) was tested for MET activation as a mechanism of erlotinib resistance. We identified a group of 20 genes highly associated with HGF overexpression in GBM and were up- or down-regulated only in tumors sensitive to MET inhibitor. The MET inhibitors regulate tumor (human) and host (mouse) cells within the tumor via distinct molecular processes, but overall impede tumor growth by inhibiting cell cycle progression. EGFR (amp) tumors undergo erlotinib resistance responded to a combination of MET and EGFR inhibitors. Combining TCGA primary tumor datasets (human) and xenograft tumor model datasets (human tumor grown in mice) using therapeutic efficacy as an endpoint may serve as a useful approach to discover and develop molecular signatures as therapeutic biomarkers for targeted therapy. The HGF dependent signature may serve as a candidate predictive signature for patient enrollment in clinical trials using MET inhibitors

  13. 17 CFR 12.12 - Signature.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 17 Commodity and Securities Exchanges 1 2010-04-01 2010-04-01 false Signature. 12.12 Section 12.12... General Information and Preliminary Consideration of Pleadings § 12.12 Signature. (a) By whom. All... document on behalf of another person. (b) Effect. The signature on any document of any person acting either...

  14. Boundary effects in a quasi-two-dimensional driven granular fluid.

    PubMed

    Smith, N D; Smith, M I

    2017-12-01

    The effect of a confining boundary on the spatial variations in granular temperature of a driven quasi-two-dimensional layer of particles is investigated experimentally. The radial drop in the relative granular temperature ΔT/T exhibits a maximum at intermediate particle numbers which coincides with a crossover from kinetic to collisional transport of energy. It is also found that at low particle numbers, the distributions of radial velocities are increasingly asymmetric as one approaches the boundary. The radial and tangential granular temperatures split, and in the tails of the radial velocity distribution there is a higher population of fast moving particles traveling away rather than towards the boundary.

  15. Translation of P = kT into a Pictorial External Representation by High School Seniors

    ERIC Educational Resources Information Center

    Matijaševic, Igor; Korolija, Jasminka N.; Mandic, Ljuba M.

    2016-01-01

    This paper describes the results achieved by high school seniors on an item which involves translation of the equation P = kT into a corresponding pictorial external representation. The majority of students (the classes of 2011, 2012 and 2013) did not give the correct answer to the multiple choice part of the translation item. They chose pictorial…

  16. Thermal boundary resistance between the end of an individual carbon nanotube and a Au surface.

    PubMed

    Hirotani, Jun; Ikuta, Tatsuya; Nishiyama, Takashi; Takahashi, Koji

    2011-08-05

    The thermal boundary resistance between an individual carbon nanotube and a Au surface was measured using a microfabricated hot-film sensor. We used both closed and open-ended multi-walled carbon nanotubes and obtained thermal boundary resistance values of 0.947-1.22 × 10(7) K W(-1) and 1.43-1.76 × 10(7) K W(-1), respectively. Considering all uncertainties, including the contact area, the thermal boundary conductances per unit area were calculated to be 8.6 × 10(7)-2.2 × 10(8) W m(-2) K(-1) for c-axis orientation and 4.2 × 10(8)-1.2 × 10(9) W m(-2) K(-1) for the a-axis. The trend in these values agrees with the predicted conductance dependence on the interface orientation of anisotropic carbon-based materials. However, the measured thermal boundary conductances are found to be much larger than the reported results.

  17. Boundary issues

    NASA Astrophysics Data System (ADS)

    Townsend, Alan R.; Porder, Stephen

    2011-03-01

    A 2008 Transformation of the nitrogen cycle: Recent trends, questions, and potential solutions Science 320 889-92 Handoh I C and Lenton T M 2003 Periodic mid-Cretaceous oceanic anoxic events linked by oscillations of the phosphorus and oxygen biogeochemical cycles global Biogeochemical Cycles 17 1092 MacDonald G K, Bennett E M, Potter P A and Ramankutty N 2011 Agronomic phosphorus imbalances across the world_s croplands Proc. Natl Acad. Sci. 108 3086-91 Malthus T 1798 An Essay on the Principle of Population (available at http://www.gutenberg.org/browse/authors/m\\#a1411 Smil V 2000 Phosphorus in the environment: Natural flows and human interferences Annu. Rev. Energy Environ. 25 53-88 Rockström J et al 2009 A safe operating space for humanity Nature 461 472-5 Sanchez P A and Swaminathan M S 2005 Cutting world hunger in half Science 307 357-9 Schlesinger W H 2009 Planetary boundaries: Thresholds risk prolonged degradation Nature Reports Climate Change doi:10.1038/climate.2009.93 Smith V H and Schindler D W 2009 Eutrophication science: where do we go from here? Trends in Ecology and Evolution 24 201-7 Van Kauenbergh S J 2010 World Phosphate Rock Reserves and Resources (Muscle Shoals, AL: International Fertilizer Development Center) Vitousek P M, Naylor R, Crews T, David M B, Drinkwater L E, Holland E, Johnes P J, Katzenberger J, Martinelli L A, Matson P A, Nziguheba G, Ojima D, Palm C A, Robertson G P, Sanchez P A, Townsend A R, Zhang F S 2009 Nutrient Imbalances in Agricultural Development Science 324 1519-20

  18. The defect level and ideal thermal conductivity of graphene uncovered by residual thermal reffusivity at the 0 K limit

    NASA Astrophysics Data System (ADS)

    Xie, Yangsu; Xu, Zaoli; Xu, Shen; Cheng, Zhe; Hashemi, Nastaran; Deng, Cheng; Wang, Xinwei

    2015-05-01

    Due to its intriguing thermal and electrical properties, graphene has been widely studied for potential applications in sensor and energy devices. However, the reported value for its thermal conductivity spans from dozens to thousands of W m-1 K-1 due to different levels of alternations and defects in graphene samples. In this work, the thermal diffusivity of suspended four-layered graphene foam (GF) is characterized from room temperature (RT) down to 17 K. For the first time, we identify the defect level in graphene by evaluating the inverse of thermal diffusivity (termed ``thermal reffusivity'': Θ) at the 0 K limit. By using the Debye model of Θ = Θ0 + C × e-θ/2T and fitting the Θ-T curve to the point of T = 0 K, we identify the defect level (Θ0) and determine the Debye temperature of graphene. Θ0 is found to be 1878 s m-2 for the studied GF and 43-112 s m-2 for three highly crystalline graphite materials. This uncovers a 16-43-fold higher defect level in GF than that in pyrolytic graphite. In GF, the phonon mean free path solely induced by defects and boundary scattering is determined as 166 nm. The Debye temperature of graphene is determined to be 1813 K, which is very close to the average theoretical Debye temperature (1911 K) of the three acoustic phonon modes in graphene. By subtracting the defect effect, we report the ideal thermal diffusivity and conductivity (κideal) of graphene presented in the 3D foam structure in the range of 33-299 K. Detailed physics based on chemical composition and structure analysis are given to explain the κideal-T profile by comparing with those reported for suspended graphene.Due to its intriguing thermal and electrical properties, graphene has been widely studied for potential applications in sensor and energy devices. However, the reported value for its thermal conductivity spans from dozens to thousands of W m-1 K-1 due to different levels of alternations and defects in graphene samples. In this work, the thermal

  19. RNA Chimeras as a Gene Signature of Breast Cancer

    DTIC Science & Technology

    2013-05-01

    Gingeras,T.R. (2009) Implications of chimaeric non-co-linear transcripts. Nature, 461, 206- 211. 11. Katayama,S., Tomaru,Y., Kasukawa,T., Waki ,K...vitro. PLoS One 2010; 5:e12271; PMID:20805885; http:// dx.doi.org/10.1371/journal.pone.0012271. 24. Katayama S, Tomaru Y, Kasukawa T, Waki K

  20. Reconstruction of 3d grain boundaries from rock thin sections, using polarised light

    NASA Astrophysics Data System (ADS)

    Markus Hammes, Daniel; Peternell, Mark

    2016-04-01

    .E., King, W.E., McNelley, T.R., McQueen, H.J., Rollett, A.D., 1997: Current issues in recrystallization: a review. Materials Science and Engineering A 238, 219-274. Hammes, D.M., Peternell, M., in review. FAME: Software for analysing rock microstructures. Computers & Geoscience. Kruhl, J.H., Peternell, M., 2002. The equilibration of high-angle grain boundaries in dynamically recrystallized quartz: the effect of crystallography and temperature. Journal of Structural Geology 24, 1125-1137. Kuntcheva, B., Kruhl, J.H. & Kunze, K., 2006. Crystallographic orientation of high-angle grain boundaries in dynamically recrystallized quartz: First results. Tectonophysics 421, 331-346. Peternell, M., Hasalová, P., Wilson, J.L., Piaziolo, S., Schulmann, K., 2010. Evaluating quartz crystallographic preferred orientations and the role of deformation partitioning using EBSD and fabric analyser techniques. Journal of Structural Geology 32, 803-817.

  1. Cyanidin-3-rutinoside increases glucose uptake by activating the PI3K/Akt pathway in 3T3-L1 adipocytes.

    PubMed

    Choi, Kyung Ha; Lee, Hyun Ah; Park, Mi Hwa; Han, Ji-Sook

    2017-09-01

    In this study, the effect of cyanidin-3-rutinoside (C3R) on glucose uptake by 3T3-L1 adipocytes was studied. C3R significantly increased glucose uptake, which was associated with enhanced plasma membrane glucose transporter type 4 (PM-GLUT4) expression in 3T3-L1 adipocytes. The potentiating effect of C3R on glucose uptake and PM-GLUT4 expression was related to enhanced phosphorylation of insulin receptor substrate 1 (IRS-1) and Akt, as well as augmented activation of phosphatidylinositol-3-kinase (PI3K) in the insulin signaling pathway. C3R induced glucose uptake was inhibited only by the PI3K inhibitor, but not by an AMPK inhibitor in 3T3-L1 adipocytes. Therefore, C3R likely up-regulates glucose uptake and PM-GLUT4 expression in 3T3-L1 adipocytes by activating the PI3K/Akt pathways. Copyright © 2017 Elsevier B.V. All rights reserved.

  2. IL-12 and IL-23 Production in Toxoplasma gondii- or LPS-Treated Jurkat T Cells via PI3K and MAPK Signaling Pathways.

    PubMed

    Ismail, Hassan Ahmed Hassan Ahmed; Kang, Byung-Hun; Kim, Jae-Su; Lee, Jae-Hyung; Choi, In-Wook; Cha, Guang-Ho; Yuk, Jae-Min; Lee, Young-Ha

    2017-12-01

    IL-12 and IL-23 are closely related in structure, and have been shown to play crucial roles in regulation of immune responses. However, little is known about the regulation of these cytokines in T cells. Here, we investigated the roles of PI3K and MAPK pathways in IL-12 and IL-23 production in human Jurkat T cells in response to Toxoplasma gondii and LPS. IL-12 and IL-23 production was significantly increased in T cells after stimulation with T. gondii or LPS. T. gondii and LPS increased the phosphorylation of AKT, ERK1/2, p38 MAPK, and JNK1/2 in T cells from 10 min post-stimulation, and peaked at 30-60 min. Inhibition of the PI3K pathway reduced IL-12 and IL-23 production in T. gondii-infected cells, but increased in LPS-stimulated cells. IL-12 and IL-23 production was significantly reduced by ERK1/2 and p38 MAPK inhibitors in T. gondii- and LPS-stimulated cells, but not in cells treated with a JNK1/2 inhibitor. Collectively, IL-12 and IL-23 production was positively regulated by PI3K and JNK1/2 in T. gondii-infected Jurkat cells, but negatively regulated in LPS-stimulated cells. And ERK1/2 and p38 MAPK positively regulated IL-12 and IL-23 production in Jurkat T cells. These data indicate that T. gondii and LPS induced IL-12 and IL-23 production in Jurkat T cells through the regulation of the PI3K and MAPK pathways; however, the mechanism underlying the stimulation of IL-12 and IL-23 production by T. gondii in Jurkat T cells is different from that of LPS.

  3. Acoustic/infrasonic rocket engine signatures

    NASA Astrophysics Data System (ADS)

    Tenney, Stephen M.; Noble, John M.; Whitaker, Rodney W.; ReVelle, Douglas O.

    2003-09-01

    Infrasonics offers the potential of long-range acoustic detection of explosions, missiles and even sounds created by manufacturing plants. The atmosphere attenuates acoustic energy above 20 Hz quite rapidly, but signals below 10 Hz can propagate to long ranges. Space shuttle launches have been detected infrasonically from over 1000 km away and the Concorde airliner from over 400 km. This technology is based on microphones designed to respond to frequencies from .1 to 300 Hz that can be operated outdoors for extended periods of time with out degrading their performance. The US Army Research Laboratory and Los Alamos National Laboratory have collected acoustic and infrasonic signatures of static engine testing of two missiles. Signatures were collected of a SCUD missile engine at Huntsville, AL and a Minuteman engine at Edwards AFB. The engines were fixed vertically in a test stand during the burn. We will show the typical time waveform signals of these static tests and spectrograms for each type. High resolution, 24-bit data were collected at 512 Hz and 16-bit acoustic data at 10 kHz. Edwards data were recorded at 250 Hz and 50 Hz using a Geotech Instruments 24 bit digitizer. Ranges from the test stand varied from 1 km to 5 km. Low level and upper level meteorological data was collected to provide full details of atmospheric propagation during the engine test. Infrasonic measurements were made with the Chaparral Physics Model 2 microphone with porous garden hose attached for wind noise suppression. A B&K microphone was used for high frequency acoustic measurements. Results show primarily a broadband signal with distinct initiation and completion points. There appear to be features present in the signals that would allow identification of missile type. At 5 km the acoustic/infrasonic signal was clearly present. Detection ranges for the types of missile signatures measured will be predicted based on atmospheric modeling. As part of an experiment conducted by ARL

  4. Lilliput effect in a retroplumid crab (Crustacea: Decapoda) across the K/Pg boundary

    NASA Astrophysics Data System (ADS)

    Martínez-Díaz, José Luis; Phillips, George E.; Nyborg, Torrey; Espinosa, Belinda; Távora, Vladimir de Araújo; Centeno-García, Elena; Vega, Francisco J.

    2016-08-01

    The genus Costacopluma (Brachyura: Decapoda: Retroplumidae) had a wide distribution during the early Paleogene and is currently represented by 14 species across the Late Cretaceous and early Paleogene. Described early Paleogene species have a smaller mean body size compared to Campanian-Maastrichtian populations of Africa, northeastern Mexico, and southeastern United States. Originally described from the Paleocene and Eocene of Alabama, Costacopluma grayi Feldmann and Portell, 2007, is now documented from the uppermost Maastrichtian (66.2 Ma) of northeastern Mexico and Mississippi and Lower Paleocene of Arkansas, all representing medium size specimens. The morphological features of latest Maastrichtian (66.2 Ma) individuals are identical to those observed among populations of C. grayi from the Paleogene of Alabama and Arkansas, which have a smaller mean size. This size reduction, or dwarfism, in C. grayi across the K-Pg boundary is an example of the Lilliput effect. Dwarfism has been documented in several invertebrate groups as a response to environmental stress, but this is the first record of the Lilliput effect in brachyuran crustaceans. The stratigraphic and geographic range for Costacopluma mexicana Vega and Perrilliat, 1989, is extended to the upper Campanian in northeastern Mexico and lower Maastrichtian in Mississippi and is suggested as a possible ancestor of C. grayi. Different preservational modes for this species in northeastern Mexico are discussed.

  5. A spectrum of the veiled T Tauri star CY Tau

    NASA Technical Reports Server (NTRS)

    Stuewe, J. A.; Schultz, R.

    1994-01-01

    We present a flux calibrated spectrum of the star listed as CY Tau in the `General Catalog of Variable Stars 4th ed.' in the spectral range 3700 A less than or equal to lambda less than or equal to 6400 A with a resolution of approximately equals 15 A showing the Balmer-Series from H(sub beta) to H(sub 10) as well as the CaII H (in blend with H(sub epsilon) and K lines in emission. Apart from the emission lines the spectrum is composed of a continuum equivalent to that of an ordinary pre-main sequence star (i.e. a `naked' T Tau) of spectral type M2 V with emission lines plus a `blue' veiling continuum that can be described as black body radiation of temperature T(sub BL) approximately equals 7000K due to accretion onto a boundary layer at a rate of M-dot(sub acc) greater than or approximately = 2.18 10(exp -8) solar mass/a.

  6. Chicxulub's Cretaceous-Tertiary Boundary Twin Crater. Was There a Double Impact in the Yucatan Peninsula?

    NASA Astrophysics Data System (ADS)

    Camargo, A. Z.; Juarez, J. S.

    2004-05-01

    In 1980, Alvarez and co-authors proposed that the K/T extinctions were caused by the effects of a celestial body falling on Earth. After a long search for the impact site, the 1981 work by Penfield and Camargo on a 170 km structure in the Yucatan Peninsula got the attention of the specialists, and it was later proved that it was the crater created by the impact of that celestial body. New data suggests the existence of a second impact crater close to Chicxulub, both being of the same age and created by two fragments of the same celestial boby. A new magnetic map plotted as a color-coded shaded relief surface, reveals a feature not evident before: two interlaced ringed anomalies of about 100 and 50 km diameters, the larger one related to the magnetic signature of the Chicxulub Crater, and the second located at its E-SE edge. The 50 km anomaly, with morphology similar to Chicxulub's, is interpreted as also corresponding to an impact crater, centered at about 89 Deg. Long. W and 21 Deg. Lat. N, close to the city of Izamal. The anomaly size indicates that the diameter of the IZAMAL CRATER is about 85 km. The Chicxulub Crater, being buried under several hundred meters of Tertiary carbonate rocks, is not visible from the surface or from space; although some surface expression of its morphology has been reported. The best known is the ring of cenotes (sink holes) at the crater's rim, visible on satellite images and photographs. The JPL/NASA image PIA03379, is a color-coded shaded relief image of terrain elevation in which the topography was exagerated to highlight the Chicxulub Crater rim. On this image, a semi circular arc of dark spots is also visible immediately to the E-SE of the Chicxulub Crater rim. These spots are interpreted as large irregular karstic depressions, similar to the ones along the cenote ring of Chicxulub. On the evidence of the spatial relationship of the magnetic anomalies and the satellite image features, we tested how well the proposed Izamal

  7. The effects of extrinsic motivation on signature authorship opinions in forensic signature blind trials.

    PubMed

    Dewhurst, Tahnee N; Found, Bryan; Ballantyne, Kaye N; Rogers, Doug

    2014-03-01

    Expertise studies in forensic handwriting examination involve comparisons of Forensic Handwriting Examiners' (FHEs) opinions with lay-persons on blind tests. All published studies of this type have reported real and demonstrable skill differences between the specialist and lay groups. However, critics have proposed that any difference shown may be indicative of a lack of motivation on the part of lay participants, rather than a real difference in skill. It has been suggested that qualified FHEs would be inherently more motivated to succeed in blinded validation trials, as their professional reputations could be at risk, should they perform poorly on the task provided. Furthermore, critics suggest that lay-persons would be unlikely to be highly motivated to succeed, as they would have no fear of negative consequences should they perform badly. In an effort to investigate this concern, a blind signature trial was designed and administered to forty lay-persons. Participants were required to compare known (exemplar) signatures of an individual to questioned signatures and asked to express an opinion regarding whether the writer of the known signatures wrote each of the questioned signatures. The questioned signatures comprised a mixture of genuine, disguised and simulated signatures. The forty participants were divided into two separate groupings. Group 'A' were requested to complete the trial as directed and were advised that for each correct answer they would be financially rewarded, for each incorrect answer they would be financially penalized, and for each inconclusive opinion they would receive neither penalty nor reward. Group 'B' was requested to complete the trial as directed, with no mention of financial recompense or penalty. The results of this study do not support the proposition that motivation rather than skill difference is the source of the statistical difference in opinions between individuals' results in blinded signature proficiency trials. Crown

  8. Boundary Regularity for the Porous Medium Equation

    NASA Astrophysics Data System (ADS)

    Björn, Anders; Björn, Jana; Gianazza, Ugo; Siljander, Juhana

    2018-05-01

    We study the boundary regularity of solutions to the porous medium equation {u_t = Δ u^m} in the degenerate range {m > 1} . In particular, we show that in cylinders the Dirichlet problem with positive continuous boundary data on the parabolic boundary has a solution which attains the boundary values, provided that the spatial domain satisfies the elliptic Wiener criterion. This condition is known to be optimal, and it is a consequence of our main theorem which establishes a barrier characterization of regular boundary points for general—not necessarily cylindrical—domains in {{R}^{n+1}} . One of our fundamental tools is a new strict comparison principle between sub- and superparabolic functions, which makes it essential for us to study both nonstrict and strict Perron solutions to be able to develop a fruitful boundary regularity theory. Several other comparison principles and pasting lemmas are also obtained. In the process we obtain a rather complete picture of the relation between sub/superparabolic functions and weak sub/supersolutions.

  9. Shallow repeating slow-slip-events along the convergent block boundary in northern Hokkaido, Japan

    NASA Astrophysics Data System (ADS)

    Ikeda, S.; Heki, K.; Kimura, T.

    2015-12-01

    The Japanese Islands are divided into several crustal blocks [e.g. Loveless and Meade, 2010 JGR]. In the Northern Hokkaido, the boundary between the Amurian and the North American Plates run north-south between 44.0N and 45.4N. The east-west block convergence is considered to be as fast as ~1 cm/year there, but few large earthquakes are known to have occurred along this boundary. Recently, a slow slip event (SSE) is reported to have occurred in a segment at ~45.0N over a 4 months period from 2012 summer to the early 2013 [Ohzono et al., 2014 GJI]. The maximum surface movements was about 15 mm, and the moment magnitude of the SSE would not exceed 6.0 (fault slip is estimated as 10 cm). This suggests that plate convergence takes place as episodic SSEs in this block boundary. In this research, we looked for signatures of repeating SSEs along this block boundary using continuous GNSS data of the dense array GEONET in Japan. In order to detect faint signatures of SSEs in the coordinate time series, we adopted the method using AIC (Akaike's Information Criterion) similar to Nishimura et al. [2013 JGR] and Nishimura [2014 PEPS]. As a result, we were able to find numbers of SSE signals in various segments along the boundary. The detected SSEs are all fairly small, and surface movements did not exceed a few millimeters (except the 2012-2013 SSE reported in Ohzono et al. [2014]). We also searched earthquakes that may have triggered these SSEs. Although the 2012 SSE seems to have been triggered by a deep earthquake beneath Sakhalin on Aug. 14, 2012, no clear triggering earthquakes were identified for other SSEs. SSEs in subduction zones are known to recur fairly regularly, e.g. biannually repeating SSE in the SW part of the Ryukyu Arc [Heki and Kataoka, 2008 JGR]. However, shallow SSEs along the block boundary in the northern Hokkaido did not show such regular occurrences. We plan to confirm these SSE occurrences by comparing GNSS data with the Hi-Net tiltmeter records.

  10. Bipyrimidine Signatures as a Photoprotective Genome Strategy in G + C-rich Halophilic Archaea.

    PubMed

    Jones, Daniel L; Baxter, Bonnie K

    2016-09-02

    Halophilic archaea experience high levels of ultraviolet (UV) light in their environments and demonstrate resistance to UV irradiation. DNA repair systems and carotenoids provide UV protection but do not account for the high resistance observed. Herein, we consider genomic signatures as an additional photoprotective strategy. The predominant forms of UV-induced DNA damage are cyclobutane pyrimidine dimers, most notoriously thymine dimers (T^Ts), which form at adjacent Ts. We tested whether the high G + C content seen in halophilic archaea serves a photoprotective function through limiting T nucleotides, and thus T^T lesions. However, this speculation overlooks the other bipyrimidine sequences, all of which capable of forming photolesions to varying degrees. Therefore, we designed a program to determine the frequencies of the four bipyrimidine pairs (5' to 3': TT, TC, CT, and CC) within genomes of halophilic archaea and four other randomized sample groups for comparison. The outputs for each sampled genome were weighted by the intrinsic photoreactivities of each dinucleotide pair. Statistical methods were employed to investigate intergroup differences. Our findings indicate that the UV-resistance seen in halophilic archaea can be attributed in part to a genomic strategy: high G + C content and the resulting bipyrimidine signature reduces the genomic photoreactivity.

  11. Bipyrimidine Signatures as a Photoprotective Genome Strategy in G + C-rich Halophilic Archaea

    PubMed Central

    Jones, Daniel L.; Baxter, Bonnie K.

    2016-01-01

    Halophilic archaea experience high levels of ultraviolet (UV) light in their environments and demonstrate resistance to UV irradiation. DNA repair systems and carotenoids provide UV protection but do not account for the high resistance observed. Herein, we consider genomic signatures as an additional photoprotective strategy. The predominant forms of UV-induced DNA damage are cyclobutane pyrimidine dimers, most notoriously thymine dimers (T^Ts), which form at adjacent Ts. We tested whether the high G + C content seen in halophilic archaea serves a photoprotective function through limiting T nucleotides, and thus T^T lesions. However, this speculation overlooks the other bipyrimidine sequences, all of which capable of forming photolesions to varying degrees. Therefore, we designed a program to determine the frequencies of the four bipyrimidine pairs (5’ to 3’: TT, TC, CT, and CC) within genomes of halophilic archaea and four other randomized sample groups for comparison. The outputs for each sampled genome were weighted by the intrinsic photoreactivities of each dinucleotide pair. Statistical methods were employed to investigate intergroup differences. Our findings indicate that the UV-resistance seen in halophilic archaea can be attributed in part to a genomic strategy: high G + C content and the resulting bipyrimidine signature reduces the genomic photoreactivity. PMID:27598206

  12. Biostratigraphy of the Cretaceous/Tertiary boundary in the Sirwan Valley (Sulaimani Region, Kurdistan, NE Iraq)

    NASA Astrophysics Data System (ADS)

    Sharbazheri, Khalid Mahmood; Ghafor, Imad Mahmood; Muhammed, Qahtan Ahmad

    2009-10-01

    The Cretaceous/Tertiary (K/T) boundary sequence, which crops out in the studied area is located within the High Folded Zone, in the Sirwan Valley, northeastern Iraq. These units mainly consist of flysch and flysch-type successions of thick clastic beds of Tanjero/Kolosh Formations. A detailed lithostratigraphic study is achieved on the outcropping uppermost part of the Upper Cretaceous successions (upper part of Tanjero Formation) and the lowermost part of the Kolosh Formation. On the basis of the identified planktonic foraminiferal assemblages, five biozones are recorded from the uppermost part of Tanjero Formation and four biozones from the lower part of the Kolosh Formation (Lower Paleocene) in the Sirwan section. The biostratigraphic correlations based on planktonic foraminiferal zonations showed a comparison between the biostratigraphic zones established in this study and other equivalents of the commonly used planktonic zonal scheme around the Cretaceous/Tertiary boundary in and outside Iraq.

  13. Associated {Upsilon}+{gamma} production at the LHC in the k{sub t}-factorization approach

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Baranov, S. P.

    In the framework of the k{sub t}-factorization approach, the photon-associated production of {Upsilon} mesons at the present-day LHC conditions is studied. The differential cross sections and polarization parameters are calculated in the ''helicity'' and Collins-Soper systems. Special attention is paid to the effect of experimental cuts that can dramatically change the visible lepton angular distributions.

  14. Measurement of the muon beam direction and muon flux for the T2K neutrino experiment

    NASA Astrophysics Data System (ADS)

    Suzuki, K.; Aoki, S.; Ariga, A.; Ariga, T.; Bay, F.; Bronner, C.; Ereditato, A.; Friend, M.; Hartz, M.; Hiraki, T.; Ichikawa, A. K.; Ishida, T.; Ishii, T.; Juget, F.; Kikawa, T.; Kobayashi, T.; Kubo, H.; Matsuoka, K.; Maruyama, T.; Minamino, A.; Murakami, A.; Nakadaira, T.; Nakaya, T.; Nakayoshi, K.; Otani, M.; Oyama, Y.; Patel, N.; Pistillo, C.; Sakashita, K.; Sekiguchi, T.; Suzuki, S. Y.; Tada, S.; Yamada, Y.; Yamamoto, K.; Yokoyama, M.

    2015-05-01

    The Tokai-to-Kamioka (T2K) neutrino experiment measures neutrino oscillations by using an almost pure muon neutrino beam produced at the J-PARC accelerator facility. The T2K muon monitor was installed to measure the direction and stability of the muon beam which is produced in conjunction with the muon neutrino beam. The systematic error in the muon beam direction measurement was estimated, using data and MC simulation, to be 0.28 mrad. During beam operation, the proton beam has been controlled using measurements from the muon monitor and the direction of the neutrino beam has been tuned to within 0.3 mrad with respect to the designed beam-axis. In order to understand the muon beam properties, measurement of the absolute muon yield at the muon monitor was conducted with an emulsion detector. The number of muon tracks was measured to be (4.06± 0.05± 0.10)× 10^4cm^{-2} normalized with 4× 10^{11} protons on target with 250 kA horn operation. The result is in agreement with the prediction, which is corrected based on hadron production data.

  15. Deep To Shallow, Time Transgressive Shift In The Source Of Bottom Waters On Demerara Rise Inferred From Neodymium Isotopes In Fish Debris

    NASA Astrophysics Data System (ADS)

    Isaza-Londoño, C.; MacLeod, K. G.; Martin, E. E.; Jiménez Berrocoso

    2008-12-01

    Between the Campanian and Danian, ɛNd values of fish debris from four sites on Demerara Rise (tropical North Atlantic) shift by ~5 units from -16 to -11. Low values from Campanian and early Maastrichtian samples are similar to values measured on most other Late Cretaceous samples from Demerara sites, whereas the post-shift values are similar to Late Cretaceous and Paleogene values observed at a number of other North Atlantic deep sea sites. In addition, at the two relatively deep sites studied (Ocean Drilling Program [ODP] Sites 1258 and 1260), the shift begins near the base of the Maastrichtian Abathomphalus mayaroensis planktonic foraminifera Zone and values increase over an interval representing several million years of deposition. In two relatively shallow sites (OSP Sites 1259 and 1261), on the other hand, ɛNd values remain low through the highest Cretaceous samples measured, which are from near the top of the Abathomphalus mayaroensis Zone. Therefore, low values persist for several million years longer at the shallower sites. At Site 1259, no Paleogene samples have been analyzed yet, but at Site 1261 values shift from ~-16.5 to ~-13 in samples separated by ~3.5 m and bracketing the Cretaceous/Paleogene (K/T) boundary. Unfortunately, the K/T boundary is not complete at Site 1261, so the relationship to the K/T event is unclear. Ongoing work is focused on constraining the relationship between ɛNd shifts and the K/T boundary using the more complete record at Site 1259 and at examining whether there is any high frequency variation superimposed on the gradual trends observed, especially at the deeper sites. Regardless of the outcome of the these analyses, assuming the low ɛNd values characteristic of most the Late Cretaceous on Demerara Rise are the signature of a locally formed intermediate water mass, the existing data already indicate that the importance of downwelling in the tropical North Atlantic began to wane in the mid- Maastrichtian and had apparently

  16. Signature of Indian Ocean Dipole on the western boundary current of the Bay of Bengal

    NASA Astrophysics Data System (ADS)

    Sherin, V. R.; Durand, F.; Gopalkrishna, V. V.; Anuvinda, S.; Chaitanya, A. V. S.; Bourdallé-Badie, R.; Papa, F.

    2018-06-01

    This study uses an unprecedented collection of 27 years of repeated eXpendable Bathy Thermograph (XBT) sections crossing the western and north-western boundaries of the Bay of Bengal (BoB). Our objective is to analyse the variability of the boundary current that flows there, known as the East India Coastal Current (EICC). In the western BoB, in line with the past observational and modelling studies, our dataset confirms that the EICC seasonally flows poleward from February to July (with a peak transport of 5 Sv), then decays and reverses to equatorward towards the equator from October to December (with a peak transport of 3 Sv), reversing again to poleward in December. In the north-western BoB, the seasonal EICC prominently flows north-eastward, with a peak transport of 7 Sv in March. Over the rest of the climatological year, the transport remains north-westward and weak (of order 2 Sv at most). Beyond the seasonal climatology, the timespan of our dataset allows us to put a special emphasis on the departures from the seasonal cycle of the EICC velocity and transport. It is observed that this non-seasonal variability is actually larger than the seasonal climatology, so that the seasonal cycle may be completely distorted in any given year. This is true in the western boundary region as well as further offshore in the central BoB and concerns the surface as well as the subsurface layers. Indian Ocean Dipole (IOD) events influence EICC variability, supposedly through remote forcing from the equatorial Indian Ocean and generate northward (southward) anomalous transport typically reaching 5 Sv (7 Sv) in winter during positive (negative) IOD events. In addition to IOD events, most of the variability observed at inter-annual timescales seems to be driven by ocean turbulence. A comparison of our observed current with a suite of state-of-the-art ocean reanalyses and model products (SODA, ORAS4, MERCATOR-ORCA12) confirms this hypothesis, with non-eddy resolving models

  17. Enhancement of Perfluoropolyether Boundary Lubrication Performance

    NASA Technical Reports Server (NTRS)

    Jones, W. R., Jr.; Ajayi, O. O.; Wedeven, L. D.

    1996-01-01

    A ball bearing simulator operating under starved conditions was used to perform screening tests to evaluate the boundary lubrication performance of a branched perfluoropolyether (PFPE), K-143 AB. Several approaches to enhance boundary lubrication were studied. These included: (1) soluble boundary additives, (2) bearing surface modifications, (3) 'run-in' surface films, and (4) ceramic bearing components. In addition, results were compared with two non-perfluorinated liquid lubricant formulations. Based on these tests, the following tentative conclusions can be made: (1) Substantial improvements in boundary lubrication performance were observed with a beta-diketone boundary additive and a tricresyl phosphate (TCP) liquid surface pretreatment, (2) the use of rough Si3N4 balls (R(sub a) = 40 micro-inch) also provided increases in test duration, but with concomitant abrasive wear, (3) moderate improvements were seen with two boundary additives (a phosphine and a phosphatriazine) and a neat (100%) fluid (a carboxylic acid terminated PFPE); and small improvements with surface pretreatments with synthetic hydrocarbons, a polytetrafluoroethylene (PTFE) coating, and TiC coated 440 C and smooth Si3N4 balls (R(sub a) = 1 micro-inch), and (4) two non-PFPE lubricant formulations (a polyalphaolefin (PAO) and synthetic hydrocarbon) yielded substantial improvements.

  18. Temperature Reconstruction and Biomarker Variation across the Cretaceous-Paleogene Boundary, Mid-Waipara River, New Zealand

    NASA Astrophysics Data System (ADS)

    Taylor, K. W.; Hollis, C. J.; Pancost, R. D.

    2010-12-01

    The Cretaceous-Paleogene (K/Pg) boundary marks a catastrophic global extinction event, believed to be caused by an asteroid impact in northern Yucatan. Whilst the extent of mass extinction is well documented, there is ongoing debate about the immediate and longer term climatic and environmental changes triggered by the event. The northern South Island of New Zealand has several records of the K/Pg boundary, representing a range of terrestrial and marine environments. Previous studies of terrestrial palynomorphs and siliceous microfossils from these sections suggested significant cooling and terrestrial vegetation reconfiguration in the earliest Paleocene. Extinctions or local disappearances of thermophilic taxa at the K/Pg boundary are consistent with the hypothesis of a short-lived “impact winter”. The Mid-Waipara K/Pg boundary section, north Canterbury, has been identified as suitable for organic geochemical study because sufficient organic carbon is present in the siliciclastic sediments and is thermally immature. Sediments were deposited in outer shelf to upper slope depths under a neritic watermass. New estimates of sea surface temperature variation based on TEX86 elucidate the relationship between biological and climatic changes that followed the K/Pg event. Within the 0.25 m-thick interval identified as the “fern spike” in basal Paleocene sediments in this section there is no indication of a significant change in temperature relative to the Cretaceous (22-25°C). Foraminiferal and radiolarian biostratigraphy indicates that this interval spans ~100 kyrs and includes a fern succession from colonising ground ferns to tree ferns, the latter suggesting a temperate, humid climate. The transition from ferns to a conifer-dominated pollen assemblage corresponds with a remarkable decrease in temperature recorded in the TEX86 record. These cool temperatures persist over 10 m. The dominant conifer pollen type over this interval is Phyllocladites mawsonii

  19. Thermal signature, eruption style, and eruption evolution at Pele and Pillan on Io

    USGS Publications Warehouse

    Davies, A.G.; Keszthelyi, L.P.; Williams, D.A.; Phillips, C.B.; McEwen, A.S.; Lopes, R.M.C.; Smythe, W.D.; Kamp, L.W.; Soderblom, L.A.; Carlson, R.W.

    2001-01-01

    The Galileo spacecraft has been periodically monitoring volcanic activity on Io since June 1996, making it possible to chart the evolution of individual eruptions. We present results of coanalysis of Near-Infrared Mapping Spectrometer (NIMS) and solid-state imaging (SSI) data of eruptions at Pele and Pillan, especially from a particularly illuminating data set consisting of mutually constraining, near-simultaneous NIMS and SSI observations obtained during orbit C9 in June 1997. The observed thermal signature from each hot spot, and the way in which the thermal signature changes with time, tightly constrains the possible styles of eruption. Pele and Pillan have very different eruption styles. From September 1996 through May 1999, Pele demonstrates an almost constant total thermal output, with thermal emission spectra indicative of a long-lived, active lava lake. The NIMS Pillan data exhibit the thermal signature of a "Pillanian" eruption style, a large, vigorous eruption with associated open channel, or sheet flows, producing an extensive flow field by orbit C10 in September 1997. The high mass eruption rate, high liquidus temperature (at least 1870 K) eruption at Pillan is the best candidate so far for an active ultramafic (magnesium-rich, "komatiitic") flow on Io, a style of eruption never before witnessed. The thermal output per unit area from Pillan is, however, consistent with the emplacement of large, open-channel flows. Magma temperature at Pele is ~1600 K. If the magma temperature is 1600 K, it suggests a komatiitic-basalt composition. The power output from Pele is indicative of a magma volumetric eruption rate of ~250 to 340 m3 s-1. Although the Pele lava lake is considerably larger than its terrestrial counterparts, the power and mass fluxes per unit area are similar to active terrestrial lava lakes. Copyright 2001 by the American Geophysical Union.

  20. Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression.

    PubMed

    Knutson, Todd P; Daniel, Andrea R; Fan, Danhua; Silverstein, Kevin At; Covington, Kyle R; Fuqua, Suzanne Aw; Lange, Carol A

    2012-06-14

    Progesterone receptors (PR) are emerging as important breast cancer drivers. Phosphorylation events common to breast cancer cells impact PR transcriptional activity, in part by direct phosphorylation. PR-B but not PR-A isoforms are phosphorylated on Ser294 by mitogen activated protein kinase (MAPK) and cyclin dependent kinase 2 (CDK2). Phospho-Ser294 PRs are resistant to ligand-dependent Lys388 SUMOylation (that is, a repressive modification). Antagonism of PR small ubiquitin-like modifier (SUMO)ylation by mitogenic protein kinases suggests a mechanism for derepression (that is, transcriptional activation) of target genes. As a broad range of PR protein expression is observed clinically, a PR gene signature would provide a valuable marker of PR contribution to early breast cancer progression. Global gene expression patterns were measured in T47D and MCF-7 breast cancer cells expressing either wild-type (SUMOylation-capable) or K388R (SUMOylation-deficient) PRs and subjected to pathway analysis. Gene sets were validated by RT-qPCR. Recruitment of coregulators and histone methylation levels were determined by chromatin immunoprecipitation. Changes in cell proliferation and survival were determined by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assays and western blotting. Finally, human breast tumor cohort datasets were probed to identify PR-associated gene signatures; metagene analysis was employed to define survival rates in patients whose tumors express a PR gene signature. 'SUMO-sensitive' PR target genes primarily include genes required for proliferative and pro-survival signaling. DeSUMOylated K388R receptors are preferentially recruited to enhancer regions of derepressed genes (that is, MSX2, RGS2, MAP1A, and PDK4) with the steroid receptor coactivator, CREB-(cAMP-response element-binding protein)-binding protein (CBP), and mixed lineage leukemia 2 (MLL2), a histone methyltransferase mediator of nucleosome remodeling. PR SUMOylation