Sample records for kaia tnsuaadu villem

  1. A dynamic interaction process between KaiA and KaiC is critical to the cyanobacterial circadian oscillator.

    PubMed

    Dong, Pei; Fan, Ying; Sun, Jianqiang; Lv, Mengting; Yi, Ming; Tan, Xiao; Liu, Sen

    2016-04-26

    The core circadian oscillator of cyanobacteria consists of three proteins, KaiA, KaiB, and KaiC. This circadian oscillator could be functionally reconstituted in vitro with these three proteins, and therefore has been a very important model in circadian rhythm research. KaiA can bind to KaiC and then stimulate its phosphorylation, but their interaction mechanism remains elusive. In this study, we followed the "second-site suppressor" strategy to investigate the interaction mechanism of KaiA and KaiC. Using protein sequence analyses, we showed that there exist co-varying residues in the binding interface of KaiA and KaiC. The followed mutagenesis study verified that these residues are important to the functions of KaiA and KaiC, but their roles could not be fully explained by the reported complex structures of KaiA and KaiC derived peptides. Combining our data with previous reports, we suggested a dynamic interaction mechanism in KaiA-KaiC interaction, in which both KaiA and the intrinsically disordered tail of KaiC undergo significant structural changes through conformational selection and induced fit during the binding process. At last, we presented a mathematic model to support this hypothesis and explained the importance of this interaction mechanism for the KaiABC circadian oscillator.

  2. A dynamic interaction process between KaiA and KaiC is critical to the cyanobacterial circadian oscillator

    NASA Astrophysics Data System (ADS)

    Dong, Pei; Fan, Ying; Sun, Jianqiang; Lv, Mengting; Yi, Ming; Tan, Xiao; Liu, Sen

    2016-04-01

    The core circadian oscillator of cyanobacteria consists of three proteins, KaiA, KaiB, and KaiC. This circadian oscillator could be functionally reconstituted in vitro with these three proteins, and therefore has been a very important model in circadian rhythm research. KaiA can bind to KaiC and then stimulate its phosphorylation, but their interaction mechanism remains elusive. In this study, we followed the “second-site suppressor” strategy to investigate the interaction mechanism of KaiA and KaiC. Using protein sequence analyses, we showed that there exist co-varying residues in the binding interface of KaiA and KaiC. The followed mutagenesis study verified that these residues are important to the functions of KaiA and KaiC, but their roles could not be fully explained by the reported complex structures of KaiA and KaiC derived peptides. Combining our data with previous reports, we suggested a dynamic interaction mechanism in KaiA-KaiC interaction, in which both KaiA and the intrinsically disordered tail of KaiC undergo significant structural changes through conformational selection and induced fit during the binding process. At last, we presented a mathematic model to support this hypothesis and explained the importance of this interaction mechanism for the KaiABC circadian oscillator.

  3. Surface Operations Simulator and Scheduler (SOSS) Presentation

    NASA Technical Reports Server (NTRS)

    Zhu, Zhifan

    2016-01-01

    NASA - KAIA (Korea Agency for Infrastructure Technology Advancement) - KARI (Korea Aerospace Research Institute) collaboration surface air traffic management research has been ongoing since May 2015. In the first year collaboration, NASA's SOSS software has been transferred to KAIA and KARI teams to provide fast time simulation capability. Incheon International Airport model has been developed for SOSS.

  4. Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator

    PubMed Central

    Pattanayek, Rekha; Yadagiri, Kirthi Kiran; Ohi, Melanie D.; Egli, Martin

    2013-01-01

    In the cyanobacteria Synechococcus elongatus and Thermosynechococcus elongatus, the KaiA, KaiB and KaiC proteins in the presence of ATP generate a post-translational oscillator (PTO) that can be reconstituted in vitro. KaiC is the result of a gene duplication and resembles a double doughnut with N-terminal CI and C-terminal CII hexameric rings. Six ATPs are bound between subunits in both the CI and CII ring. CI harbors ATPase activity, and CII catalyzes phosphorylation and dephosphorylation at T432 and S431 with a ca. 24-h period. KaiA stimulates KaiC phosphorylation, and KaiB promotes KaiC subunit exchange and sequesters KaiA on the KaiB-KaiC interface in the final stage of the clock cycle. Studies of the PTO protein-protein interactions are convergent in terms of KaiA binding to CII but have led to two opposing models of the KaiB-KaiC interaction. Electron microscopy (EM) and small angle X-ray scattering (SAXS), together with native PAGE using full-length proteins and separate CI and CII rings, are consistent with binding of KaiB to CII. Conversely, NMR together with gel filtration chromatography and denatured PAGE using monomeric CI and CII domains support KaiB binding to CI. To resolve the existing controversy, we studied complexes between KaiB and gold-labeled, full-length KaiC with negative stain EM. The EM data clearly demonstrate that KaiB contacts the CII ring. Together with the outcomes of previous analyses, our work establishes that only CII participates in interactions with KaiA and KaiB as well as with the His kinase SasA involved in the clock output pathway. PMID:23388462

  5. A thermodynamically consistent model of the post-translational Kai circadian clock

    PubMed Central

    Lubensky, David K.; ten Wolde, Pieter Rein

    2017-01-01

    The principal pacemaker of the circadian clock of the cyanobacterium S. elongatus is a protein phosphorylation cycle consisting of three proteins, KaiA, KaiB and KaiC. KaiC forms a homohexamer, with each monomer consisting of two domains, CI and CII. Both domains can bind and hydrolyze ATP, but only the CII domain can be phosphorylated, at two residues, in a well-defined sequence. While this system has been studied extensively, how the clock is driven thermodynamically has remained elusive. Inspired by recent experimental observations and building on ideas from previous mathematical models, we present a new, thermodynamically consistent, statistical-mechanical model of the clock. At its heart are two main ideas: i) ATP hydrolysis in the CI domain provides the thermodynamic driving force for the clock, switching KaiC between an active conformational state in which its phosphorylation level tends to rise and an inactive one in which it tends to fall; ii) phosphorylation of the CII domain provides the timer for the hydrolysis in the CI domain. The model also naturally explains how KaiA, by acting as a nucleotide exchange factor, can stimulate phosphorylation of KaiC, and how the differential affinity of KaiA for the different KaiC phosphoforms generates the characteristic temporal order of KaiC phosphorylation. As the phosphorylation level in the CII domain rises, the release of ADP from CI slows down, making the inactive conformational state of KaiC more stable. In the inactive state, KaiC binds KaiB, which not only stabilizes this state further, but also leads to the sequestration of KaiA, and hence to KaiC dephosphorylation. Using a dedicated kinetic Monte Carlo algorithm, which makes it possible to efficiently simulate this system consisting of more than a billion reactions, we show that the model can describe a wealth of experimental data. PMID:28296888

  6. Distinguishing Feedback Mechanisms in Clock Models

    NASA Astrophysics Data System (ADS)

    Golden, Alexander; Lubensky, David

    Biological oscillators are very diverse but can be classified based on dynamical motifs such as type of feedback. The S. Elongatus circadian oscillator is a novel circadian oscillator that can operate at constant protein number by modifying covalent states. It can be reproduced in vitro with only 3 different purified proteins: KaiA, KaiB, and KaiC. We use computational and analytic techniques to compare models of the S. Elongatus post-translational oscillator that rely on positive feedback with models that rely on negative feedback. We show that introducing a protein that binds competitively with KaiA to the KaiB-KaiC complex can distinguish between positive and negative feedback as the primary driver of the rhythm, which has so far been difficult to address experimentally. NSF Grant DMR-1056456.

  7. Management of War-Related Ballistic Craniocerebral Injuries in a French Role 3 Hospital During the Afghan Campaign.

    PubMed

    Dagain, Arnaud; Aoun, Olivier; Bordes, Julien; Roqueplo, Cédric; Joubert, Christophe; Esnault, Pierre; Sellier, Aurore; Delmas, Jean-Marc; Desse, Nicolas; Fouet, Mathilde; Pernot, Philippe; Dulou, Renaud

    2017-06-01

    France deployed to Afghanistan from 2001 to 2014 within the International Security and Assistance Force. A French role 3 hospital was built in 2009 in the vicinity of Kabul International Airport (KaIA). The objectives of this study were to describe the epidemiology, management, and outcome of war-related craniocerebral injuries during the Afghan campaign in a French role 3 hospital. From March 1, 2010 to September 30, 2012, we conducted a retrospective descriptive study in Kabul, Afghanistan. All patients presenting with a ballistic craniocerebral injury to the KaIA role 3 hospital were included. We analyzed 48 records. Mean age was 21.9 years (1-46 years) with a 37:11 (male:female) sex ratio and a majority Afghan population (n = 41). Civilians represented 64.6% (n = 31) of casualties. On the battlefield, mean Glasgow Coma Scale score was 9.4 [3-15]. On arrival at the KaIA field hospital, 20 of the 48 patients were hemodynamically unstable. All patients underwent a full-body computed tomography scan. The majority of our casualties had associated injuries. Neurosurgery was indicated for 42 (87.5%) patients. The surgery consisted of wound debridement plane by plane associated with decompressive craniectomy (n = 11), debridement craniectomy (n = 19), and craniotomy (n = 12). A total of 32.4% wounded died at the point of injury, 8.4% at the emergency department, and 16.9% after surgery. War casualties with ballistic head injuries were predominantly multitraumatized patients with hemodynamic compromise requiring neurosurgical damage control management and multidisciplinary care. The neurosurgeon has thus an essential role to play. Copyright © 2017 Elsevier Inc. All rights reserved.

  8. Airspace Technology Demonstration 3 (ATD-3): Applied Traffic Flow Management Project Overview

    NASA Technical Reports Server (NTRS)

    Gong, Chester

    2016-01-01

    ATD-3 Project Overview for 3rd Joint Workshop for KAIA-KARI - NASA ATM Research Collaboration. This presentation gives a high level description of the ATD-3 project and related technologies. These technologies include Multi-Flight Common Routes (MFCR), Traffic Aware Strategic Aircrew Requests (TASAR) and Dynamic Routes for Arrivals in Weather (DRAW).

  9. Astronomers between the graduated from the Mechanical and Mathematical Faculty of the Moscow University

    NASA Astrophysics Data System (ADS)

    Gaina, Alex

    2011-12-01

    The web page contains photographs of some pupils from the Mechanical and Mathematics division of the Moscow State University: Vladimir Trifonovich Kondurar (22.08.1911-05.1990), Evgheni Alexandrovich Grebenikov (b.20.01.1932), Georgy Nikolaevich Duboshin (1904-1986), Evgheny Petrovich Aksenov (1933-1995),Vladimir Grigor'evich Demin (1929-1996),as well as a photograph of professor of the Physics Department of the Moscow University L.K. Zarembo. A number of pupils and colleagues of Professor V.T. Kondurar (Gamarnik, Froi?kaia, ?inkarik and other) from Dnepropetrovsk (Ukraine), Novocherkassk (Russia) and Ivanovo(Russia) can be found also.

  10. Halogen content in Lesser Antilles arc volcanic rocks : exploring subduction recycling

    NASA Astrophysics Data System (ADS)

    Thierry, Pauline; Villemant, Benoit; Caron, Benoit

    2016-04-01

    mantle. 1. Villemant, B., Mouatt, J. & Michel, A., 2008. Earth Planet. Sci. Lett. 269(1), 212-229. 2. Kutterolf, S. et al., 2015. Earth Planet. Sci. Lett. 429, 234-246. 3. Michel, A. & Villemant, B., 2003. Geostand. Geoanalytical Res. 27(2), 163-171. 4. Balcone-Boissard, H., Michel, A. & Villemant, B., 2009. Geostand. Geoanalytical Res. 33(4), 477-485. 5. White, W. M. & Dupré, B., 1986. J. Geophys. Res. 91(B6), 5927. 6. Labanieh, S. et al., 2010. Earth Planet. Sci. Lett. 298(1-2), 35-46. 7. Turner, S. et al., 1996. Earth Planet. Sci. Lett. 142(1-2), 191-207. 8. Carpentier, M., Chauvel, C. & Mattielli, N., 2008. Earth Planet. Sci. Lett. 272(1-2), 199-211. 9. Labanieh, S. et al., 2012. J. Petrol. 53(12), 2441-2464.

  11. Treatment of Low Back Pain with a Digital Multidisciplinary Pain Treatment App: Short-Term Results

    PubMed Central

    Priebe, Janosch A; Baumann, Kaja-Maria; Plidschun, Anne; Schiessl, Christine; Tölle, Thomas R

    2017-01-01

    Background Even though modern concepts of disease management of unspecific low back pain (LBP) postulate active participation of patients, this strategy is difficult to adapt unless multidisciplinary pain therapy is applied. Recently, mobile health solutions have proven to be effective aides to foster self-management of many diseases. Objective The objective of this paper was to report on the retrospective short-term results of a digital multidisciplinary pain app for the treatment of LBP. Methods Kaia is a mobile app that digitalizes multidisciplinary pain treatment and is in the market as a medical product class I. For the current study, the data of anonymized Kaia users was retrospectively analyzed. User data were evaluated for 12 weeks regarding duration of use and effect on in-app user reported pain levels, using the numerical rating scale (NRS), depending on whether LBP was classified as acute, subacute, or chronic back pain according to current guidelines. Results Data of 180 users were available. The mean age of the users was 33.9 years (SD 10.9). Pain levels decreased from baseline NRS 4.8 to 3.75 for all users at the end of the observation period. Users who completed 4, 8, or 12 weeks showed an even more pronounced decrease in pain level NRS (baseline 4.9 [SD 1.7] versus 3.6 [SD 1.5] at 4 weeks; baseline 4.7 [SD 1.8] versus 3.2 [SD [2.0] at 8 weeks; baseline 4.6 [SD 2.2] versus 2.6 [SD 2.0] at 12 weeks). In addition, subgroup analysis of acute, subacute, or chronic classification revealed no significant main effect of group (P>.30) on the reduction of pain. Conclusions: This retrospective study showed that in a pre-selected population of app users, an app digitalizing multidisciplinary rehabilitation for the self-management of LBP reduced user-reported pain levels significantly. The observed effect size was clinically relevant. Ongoing prospective randomized controlled trials (RCTs) will adjust for potential bias and selection effects. Conclusions This

  12. Treatment of Low Back Pain with a Digital Multidisciplinary Pain Treatment App: Short-Term Results.

    PubMed

    Huber, Stephan; Priebe, Janosch A; Baumann, Kaja-Maria; Plidschun, Anne; Schiessl, Christine; Tölle, Thomas R

    2017-12-04

    Even though modern concepts of disease management of unspecific low back pain (LBP) postulate active participation of patients, this strategy is difficult to adapt unless multidisciplinary pain therapy is applied. Recently, mobile health solutions have proven to be effective aides to foster self-management of many diseases. The objective of this paper was to report on the retrospective short-term results of a digital multidisciplinary pain app for the treatment of LBP. Kaia is a mobile app that digitalizes multidisciplinary pain treatment and is in the market as a medical product class I. For the current study, the data of anonymized Kaia users was retrospectively analyzed. User data were evaluated for 12 weeks regarding duration of use and effect on in-app user reported pain levels, using the numerical rating scale (NRS), depending on whether LBP was classified as acute, subacute, or chronic back pain according to current guidelines. Data of 180 users were available. The mean age of the users was 33.9 years (SD 10.9). Pain levels decreased from baseline NRS 4.8 to 3.75 for all users at the end of the observation period. Users who completed 4, 8, or 12 weeks showed an even more pronounced decrease in pain level NRS (baseline 4.9 [SD 1.7] versus 3.6 [SD 1.5] at 4 weeks; baseline 4.7 [SD 1.8] versus 3.2 [SD [2.0] at 8 weeks; baseline 4.6 [SD 2.2] versus 2.6 [SD 2.0] at 12 weeks). In addition, subgroup analysis of acute, subacute, or chronic classification revealed no significant main effect of group (P>.30) on the reduction of pain. Conclusions: This retrospective study showed that in a pre-selected population of app users, an app digitalizing multidisciplinary rehabilitation for the self-management of LBP reduced user-reported pain levels significantly. The observed effect size was clinically relevant. Ongoing prospective randomized controlled trials (RCTs) will adjust for potential bias and selection effects. This retrospective study showed that in a pre

  13. Quantitative micro-Raman analysis of volcanic glasses: influence and correction of matrix effects

    NASA Astrophysics Data System (ADS)

    Di Muro, Andrea

    2014-05-01

    . Geochimica et Cosmochimica Acta, 74, 5641-5656. Mercier, M., Di Muro, A., Giordano, D., Métrich, N.,Pichavant, M., Clocchiatti, R., Montagnac, G. (2009) The influence of glass polymerization and oxidation on micro-Raman water analysis in alumino-silicate glasses. Geochimica et Cosmochimica Acta, 73, 197-217 Di Muro, A., Métrich, N., Mercier, M., Giordano, D., Massare, D., Montagnac, G. (2009) Micro-Raman determination of iron redox state in dry natural glasses : application to peralkaline rhyolites and basalts. Chemical Geology (Special volume on experimental techniques for the study of hydrothermal fluids and silicate melts) 259:78-88. Di Muro A, Villemant B, Montagnac G, Scaillet B, Reynard B (2006) The influence of glass composition on the determination of water content and speciation by Raman spectrometry. Geochimica and Cosmochimica Acta, 70, 2868-2884 Di Muro A, Giordano D., Villemant B, Montagnac G, Romano C. (2006) Influence of composition and thermal history of volcanic glasses on water content determination by microRaman spectrometry. Applied Geochemistry (Special volume on developments in analytical geochemistry). 21, 802-812. Application Di Muro, A., Staudacher, T., Ferrazzini, V., Villemant, B., Besson, P., Garofalo, C. (2014) Tracking magma injection in the Piton de la Fournaise volcanic edifice after the 2007 Summit Caldera Collapse by Pele's Hair Composition. Chapman Special Volume on Hawaiian volcanoes, AGU Books. Ardia, P., Di Muro, A., Giordano, D., Massare, D., Sanchez-Valle, C., Schmidt, M.W. (2014) Densification mechanisms of haplogranite glasses as a function of water content and pressure based on density and Raman data. Under review, submitted to Geochimica et Cosmochimica Acta. Métrich, N, Allard, P., Aiuppa, A., Bani, P., Bertagnini, A., Belhadj, O., Di Muro, A., Garaebiti, E., Massare, D., Parello, F., Shinohara, H. (2011) Magma and volatile feeding of post-caldera Yasur volcanism and block resurgence in Tanna island (Vanuatu arc). Journal of

  14. Nonstationarities in Catchment Response According to Basin and Rainfall Characteristics: Application to Korean Watershed

    NASA Astrophysics Data System (ADS)

    Kwon, Hyun-Han; Kim, Jin-Guk; Jung, Il-Won

    2015-04-01

    It must be acknowledged that application of rainfall-runoff models to simulate rainfall-runoff processes are successful in gauged watershed. However, there still remain some issues that will need to be further discussed. In particular, the quantitive representation of nonstationarity issue in basin response (e.g. concentration time, storage coefficient and roughness) along with ungauged watershed needs to be studied. In this regard, this study aims to investigate nonstationarity in basin response so as to potentially provide useful information in simulating runoff processes in ungauged watershed. For this purpose, HEC-1 rainfall-runoff model was mainly utilized. In addition, this study combined HEC-1 model with Bayesian statistical model to estimate uncertainty of the parameters which is called Bayesian HEC-1 (BHEC-1). The proposed rainfall-runofall model is applied to various catchments along with various rainfall patterns to understand nonstationarities in catchment response. Further discussion about the nonstationarity in catchment response and possible regionalization of the parameters for ungauged watershed are discussed. KEYWORDS: Nonstationary, Catchment response, Uncertainty, Bayesian Acknowledgement This research was supported by a Grant (13SCIPA01) from Smart Civil Infrastructure Research Program funded by the Ministry of Land, Infrastructure and Transport (MOLIT) of Korea government and the Korea Agency for Infrastructure Technology Advancement (KAIA).

  15. Three-dimensional mosaicking of the South Korean radar network

    NASA Astrophysics Data System (ADS)

    Berenguer, Marc; Sempere-Torres, Daniel; Lee, GyuWon

    2016-04-01

    Dense radar networks offer the possibility of improved Quantitative Precipitation Estimation thanks to the additional information collected in the overlapping areas, which allows mitigating errors associated with the Vertical Profile of Reflectivity or path attenuation by intense rain. With this aim, Roca-Sancho et al. (2014) proposed a technique to generate 3-D reflectivity mosaics from the multiple radars of a network. The technique is based on an inverse method that simulates the radar sampling of the atmosphere considering the characteristics (location, frequency and scanning protocol) of each individual radar. This technique has been applied to mosaic the observations of the radar network of South Korea (composed of 14 S-band radars), and integrate the observations of the small X-band network which to be installed near Seoul in the framework of a project funded by the Korea Agency for Infrastructure Technology Advancement (KAIA). The evaluation of the generated 3-D mosaics has been done by comparison with point measurements (i.e. rain gauges and disdrometers) and with the observations of independent radars. Reference: Roca-Sancho, J., M. Berenguer, and D. Sempere-Torres (2014), An inverse method to retrieve 3D radar reflectivity composites, Journal of Hydrology, 519, 947-965, doi: 10.1016/j.jhydrol.2014.07.039.

  16. An allele of the crm gene blocks cyanobacterial circadian rhythms.

    PubMed

    Boyd, Joseph S; Bordowitz, Juliana R; Bree, Anna C; Golden, Susan S

    2013-08-20

    The SasA-RpaA two-component system constitutes a key output pathway of the cyanobacterial Kai circadian oscillator. To date, rhythm of phycobilisome associated (rpaA) is the only gene other than kaiA, kaiB, and kaiC, which encode the oscillator itself, whose mutation causes completely arrhythmic gene expression. Here we report a unique transposon insertion allele in a small ORF located immediately upstream of rpaA in Synechococcus elongatus PCC 7942 termed crm (for circadian rhythmicity modulator), which results in arrhythmic promoter activity but does not affect steady-state levels of RpaA. The crm ORF complements the defect when expressed in trans, but only if it can be translated, suggesting that crm encodes a small protein. The crm1 insertion allele phenotypes are distinct from those of an rpaA null; crm1 mutants are able to grow in a light:dark cycle and have no detectable oscillations of KaiC phosphorylation, whereas low-amplitude KaiC phosphorylation rhythms persist in the absence of RpaA. Levels of phosphorylated RpaA in vivo measured over time are significantly altered compared with WT in the crm1 mutant as well as in the absence of KaiC. Taken together, these results are consistent with the hypothesis that the Crm polypeptide modulates a circadian-specific activity of RpaA.

  17. Coagulopathy and transfusion requirements in war related penetrating traumatic brain injury. A single centre study in a French role 3 medical treatment facility in Afghanistan.

    PubMed

    Bordes, J; Joubert, C; Esnault, P; Montcriol, A; Nguyen, C; Meaudre, E; Dulou, R; Dagain, A

    2017-05-01

    Traumatic brain injury associated coagulopathy is frequent, either in isolated traumatic brain injury in civilian practice and in combat traumatic brain injury. In war zone, it is a matter of concern because head and neck are the second most frequent site of wartime casualty burden. Data focusing on transfusion requirements in patients with war related TBI coagulopathy are limited. A descriptive analysis was conducted of 77 penetrating traumatic brain injuries referred to a French role 3 medical treatment facility in Kabul, Afghanistan, deployed on the Kabul International Airport (KaIA), over a 30 months period. On 77 patients, 23 died during the prehospital phase and were not included in the study. Severe traumatic brain injury represented 50% of patients. Explosions were the most common injury mechanism. Extracranial injuries were present in 72% of patients. Traumatic brain injury coagulopathy was diagnosed in 67% of patients at role 3 admission. Red blood cell units (RBCu) were transfused in 39 (72%) patients, French lyophilized plasma (FLYP) in 41 (76%), and fresh whole blood (FWB) in 17 (31%). The results of this study support previous observations of coagulopathy as a frequent complication of traumatic brain injury. The majority of patients with war related penetrating traumatic brain injury presented with extracranial lesions. Most of them required a high level of transfusion capacity. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Assessing the Added Value of Dynamical Downscaling in the Context of Hydrologic Implication

    NASA Astrophysics Data System (ADS)

    Lu, M.; IM, E. S.; Lee, M. H.

    2017-12-01

    There is a scientific consensus that high-resolution climate simulations downscaled by Regional Climate Models (RCMs) can provide valuable refined information over the target region. However, a significant body of hydrologic impact assessment has been performing using the climate information provided by Global Climate Models (GCMs) in spite of a fundamental spatial scale gap. It is probably based on the assumption that the substantial biases and spatial scale gap from GCMs raw data can be simply removed by applying the statistical bias correction and spatial disaggregation. Indeed, many previous studies argue that the benefit of dynamical downscaling using RCMs is minimal when linking climate data with the hydrological model, from the comparison of the impact between bias-corrected GCMs and bias-corrected RCMs on hydrologic simulations. It may be true for long-term averaged climatological pattern, but it is not necessarily the case when looking into variability across various temporal spectrum. In this study, we investigate the added value of dynamical downscaling focusing on the performance in capturing climate variability. For doing this, we evaluate the performance of the distributed hydrological model over the Korean river basin using the raw output from GCM and RCM, and bias-corrected output from GCM and RCM. The impacts of climate input data on streamflow simulation are comprehensively analyzed. [Acknowledgements]This research is supported by the Korea Agency for Infrastructure Technology Advancement (KAIA) grant funded by the Ministry of Land, Infrastructure and Transport (Grant 17AWMP-B083066-04).

  19. Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration

    PubMed Central

    Hatakeyama, Tetsuhiro S.; Kaneko, Kunihiko

    2012-01-01

    Circadian clocks—ubiquitous in life forms ranging from bacteria to multicellular organisms—often exhibit intrinsic temperature compensation; the period of circadian oscillators is maintained constant over a range of physiological temperatures, despite the expected Arrhenius form for the reaction coefficient. Observations have shown that the amplitude of the oscillation depends on the temperature but the period does not; this suggests that although not every reaction step is temperature independent, the total system comprising several reactions still exhibits compensation. Here we present a general mechanism for such temperature compensation. Consider a system with multiple activation energy barriers for reactions, with a common enzyme shared across several reaction steps. The steps with the highest activation energy rate-limit the cycle when the temperature is not high. If the total abundance of the enzyme is limited, the amount of free enzyme available to catalyze a specific reaction decreases as more substrates bind to the common enzyme. We show that this change in free enzyme abundance compensates for the Arrhenius-type temperature dependence of the reaction coefficient. Taking the example of circadian clocks with cyanobacterial proteins KaiABC, consisting of several phosphorylation sites, we show that this temperature compensation mechanism is indeed valid. Specifically, if the activation energy for phosphorylation is larger than that for dephosphorylation, competition for KaiA shared among the phosphorylation reactions leads to temperature compensation. Moreover, taking a simpler model, we demonstrate the generality of the proposed compensation mechanism, suggesting relevance not only to circadian clocks but to other (bio)chemical oscillators as well. PMID:22566655

  20. Generic temperature compensation of biological clocks by autonomous regulation of catalyst concentration.

    PubMed

    Hatakeyama, Tetsuhiro S; Kaneko, Kunihiko

    2012-05-22

    Circadian clocks--ubiquitous in life forms ranging from bacteria to multicellular organisms--often exhibit intrinsic temperature compensation; the period of circadian oscillators is maintained constant over a range of physiological temperatures, despite the expected Arrhenius form for the reaction coefficient. Observations have shown that the amplitude of the oscillation depends on the temperature but the period does not; this suggests that although not every reaction step is temperature independent, the total system comprising several reactions still exhibits compensation. Here we present a general mechanism for such temperature compensation. Consider a system with multiple activation energy barriers for reactions, with a common enzyme shared across several reaction steps. The steps with the highest activation energy rate-limit the cycle when the temperature is not high. If the total abundance of the enzyme is limited, the amount of free enzyme available to catalyze a specific reaction decreases as more substrates bind to the common enzyme. We show that this change in free enzyme abundance compensates for the Arrhenius-type temperature dependence of the reaction coefficient. Taking the example of circadian clocks with cyanobacterial proteins KaiABC, consisting of several phosphorylation sites, we show that this temperature compensation mechanism is indeed valid. Specifically, if the activation energy for phosphorylation is larger than that for dephosphorylation, competition for KaiA shared among the phosphorylation reactions leads to temperature compensation. Moreover, taking a simpler model, we demonstrate the generality of the proposed compensation mechanism, suggesting relevance not only to circadian clocks but to other (bio)chemical oscillators as well.

  1. A Plan to Develop a Red Tide Warning System for Seawater Desalination Process Management

    NASA Astrophysics Data System (ADS)

    Kim, Tae Woo; Yun, Hong Sik

    2017-04-01

    The holt of the seawater desalination process for fifty five days due to the eight-month long red tide in 2008 in the Persian Gulf, the Middle East, had lost about 10 billion KRW. The POSCO Seawater Desalination facility, located in Gwangyang Bay Area in the Southern Sea, has produced 30,000 tons of fresh water per day since 2014. Since there has been an incident of red time in the area for three months in August, 2012, it is necessary to establish a warning system for red tide that threatens the stable operation of the seawater desalination facility. A red tide warning system can offer the seawater desalination facility manager customized services on red tide information and potential red tide inflow to the water intake. This study aimed to develop a red tide warning system in Gwangyang Bay Area by combining RS, modeling and monitoring technologies, which provides red tide forecasting information with which to effectively control the seawater desalination process. Using the proposed system, the seawater desalination facility manager can take phased measures to cope with the inflow of red tide. ACKNOWLEDGMENTS This research was supported by a grant(16IFIP-C088924-03) from Industrial Facilities & Infrastructure Research Program funded by Ministry of Land, Infrastructure and Transport(MOLIT) of the Korea government and the Korea Agency for Infrastructure Technology Advancement (KAIA). This research was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education(NRF-2014R1A1A2054975).

  2. War-related extremity injuries in children: 89 cases managed in a combat support hospital in Afghanistan.

    PubMed

    Bertani, A; Mathieu, L; Dahan, J-L; Launay, F; Rongiéras, F; Rigal, S

    2015-05-01

    Meeting paediatric needs is among the priorities of western healthcare providers working in Afghanistan. Insufficient information is available on paediatric wartime injuries to the extremities. Our objective here was to describe these injuries and their management on the field. We retrospectively reviewed consecutive cases of injuries to the extremities in children (< 16 years of age) due to weapons and managed at the Kabul International Airport (KaIA) Combat Support Hospital between June 2009 and April 2013. We identified 89 patients with a mean age of 10.2 ± 3.5 years and a total of 137 elemental lesions. Explosive devices accounted for most injuries (78.6%) and carried a significantly higher risk of multiple lesions. There were 54 bone lesions (traumatic amputations and fractures) and 83 soft-tissue lesions. The amputation rate was 18%. Presence of bone lesions was associated with a higher risk of injury to blood vessels and nerves. Of the 89 patients, four (4.5%) died and eight (9%) were transferred elsewhere. Of the 77 remaining patients, at last follow-up (median, one month; range, 0.1-16 months), 73 (95%) had achieved a full recovery (healed wound and/or fracture) or were recovering with no expectation that further surgery would be needed. Despite the absence of paediatric surgeons, the combat support hospital provided appropriate care at the limb salvage and reconstruction phases. The highly specialised treatments needed to manage sequelae were very rarely provided. These treatments probably deserve to be developed in combat support hospitals. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

  3. Cephalic region war injuries in children: Experience in French NATO hospital in Kabul Afghanistan.

    PubMed

    Chehab, Hussam El; Agard, Emilie; Dot, Corinne

    2018-06-09

    The NATO KAIA Hospital (Kabul International Airport), under French command, provided medical support for NATO forces in the Kabul region from 2009 to 2014. Medical assistance to civilians was an additional mission which included support for children who were war injured. The objective of this study was to analyze characteristics of cephalic injuries in children victims of war trauma. A retrospective study was conducted and commenced with the hospital opening (July 2009) to March 2012 on all children (<15years) with war trauma. We distinguished cephalic lesions in cranial (neuro-surgical), ophthalmological and neck regions. We analyzed mechanism, region, severity score, surgeries and resuscitation efforts. 217 children were operated on with 81 war traumas (mean age 10.2years). 36 children (44.4%) had a cephalic injury. 52.9% of the injured had an ophthalmological injury, 38.2% a cranial region injury and 29.4% a neck lesion. Mortality rate was 5.6% (1 hemorrhagic shock and 1 cerebral wound) in this cephalic lesion group. Ophthalmic injuries were the most common of cephalic injuries; 19 children of which 7 had a bilateral injury (26 eyes). In this group, fragmentary injuries were the most frequent (64% of eyes). In cerebral lesion group, the lesions were linked to a bullet or a shrapnel in 9 of 13 children. This mechanism systematically caused a crania-cerebral wound. Explosion (fragmentary and shrapnel) was the most important in the neck lesions (7 children of 10). The cephalic lesions were the second most common region in children during our experience in Afghanistan. Lack of protection (helmet) in children may explain the frequency of cephalic wounds. Copyright © 2018 Elsevier Ltd. All rights reserved.

  4. Radon as a tracer to characterize the interactions between groundwater and surface water around the ground source heat pump system in riverside area

    NASA Astrophysics Data System (ADS)

    Kim, Jaeyeon; Lee, Seong-Sun; Lee, Kang-Kun

    2016-04-01

    The interaction characteristics between groundwater and surface water was examined by using Radon-222 at Han River Environmental Research Center (HRERC) in Korea where a geothermal resource using indirect open loop ground source heat pump (GSHP) has been developed. For designing a high efficiency performance of the open loop system in shallow aquifer, the riverside area was selected for great advantage of full capacity of well. From this reason groundwater properties of the study site can be easily influenced by influx of surrounding Han River. Therefore, 12 groundwater wells were used for monitoring radon concentration and groundwater level with fluctuation of river stage from May, 2014 to Apr., 2015. The short term monitoring data showed that the radon concentration was changed in accordance with flow meter data which was reflected well by the river stage fluctuation. The spatial distribution of radon concentration from long term monitoring data was also found to be affected by water level fluctuation by nearby dam activity and seasonal effect such as heavy rainfall and groundwater pumping. The estimated residence time indicates that river flows to the study site change its direction according to the combined effect of river stage and groundwater hydrology. In the linear regression of the values, flow velocities were yielded around 0.04 to 0.25 m/day which were similar to flow meter data. These results reveal that Radon-222 can be used as an appropriate environmental tracer in examining the characteristics of interaction in consideration of fluctuating river flow on operation of GSHP in the riverside area. ACKNOWLEDGEMENT This work was supported by the research project of "Advanced Technology for Groundwater Development and Application in Riversides (Geowater+) in "Water Resources Management Program (code 11 Technology Innovation C05)" of the MOLIT and the KAIA in Korea.

  5. CryoEM and Molecular Dynamics of the Circadian KaiB-KaiC Complex Indicates That KaiB Monomers Interact with KaiC and Block ATP Binding Clefts

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Villarreal, Seth A.; Pattanayek, Rekha; Williams, Dewight R.

    The circadian control of cellular processes in cyanobacteria is regulated by a posttranslational oscillator formed by three Kai proteins. During the oscillator cycle, KaiA serves to promote autophosphorylation of KaiC while KaiB counteracts this effect. Here, we present a crystallographic structure of the wild-type Synechococcus elongatus KaiB and a cryo-electron microscopy (cryoEM) structure of a KaiBC complex. The crystal structure shows the expected dimer core structure and significant conformational variations of the KaiB C-terminal region, which is functionally important in maintaining rhythmicity. The KaiBC sample was formed with a C-terminally truncated form of KaiC, KaiC-Δ489, which is persistently phosphorylated. Themore » KaiB–KaiC-Δ489 structure reveals that the KaiC hexamer can bind six monomers of KaiB, which form a continuous ring of density in the KaiBC complex. We performed cryoEM-guided molecular dynamics flexible fitting simulations with crystal structures of KaiB and KaiC to probe the KaiBC protein–protein interface. This analysis indicated a favorable binding mode for the KaiB monomer on the CII end of KaiC, involving two adjacent KaiC subunits and spanning an ATP binding cleft. A KaiC mutation, R468C, which has been shown to affect the affinity of KaiB for KaiC and lengthen the period in a bioluminescence rhythm assay, is found within the middle of the predicted KaiBC interface. The proposed KaiB binding mode blocks access to the ATP binding cleft in the CII ring of KaiC, which provides insight into how KaiB might influence the phosphorylation status of KaiC.« less

  6. Active output state of the Synechococcus Kai circadian oscillator

    PubMed Central

    Paddock, Mark L.; Boyd, Joseph S.; Adin, Dawn M.; Golden, Susan S.

    2013-01-01

    The mechanisms by which cellular oscillators keep time and transmit temporal information are poorly understood. In cyanobacteria, the timekeeping aspect of the circadian oscillator, composed of the KaiA, KaiB, and KaiC proteins, involves a cyclic progression of phosphorylation states at Ser431 and Thr432 of KaiC. Elucidating the mechanism that uses this temporal information to modulate gene expression is complicated by unknowns regarding the number, structure, and regulatory effects of output components. To identify oscillator signaling states without a complete description of the output machinery, we defined a simple metric, Kai-complex output activity (KOA), that represents the difference in expression of reporter genes between strains that carry specific variants of KaiC and baseline strains that lack KaiC. In the absence of the oscillator, expression of the class 1 paradigm promoter PkaiBC was locked at its usual peak level; conversely, that of the class 2 paradigm promoter PpurF was locked at its trough level. However, for both classes of promoters, peak KOA in wild-type strains coincided late in the circadian cycle near subjective dawn, when KaiC-pST becomes most prevalent (Ser431 is phosphorylated and Thr432 is not). Analogously, peak KOA was detected specifically for the phosphomimetic of KaiC-pST (KaiC-ET). Notably, peak KOA required KaiB, indicating that a KaiBC complex is involved in the output activity. We also found evidence that phosphorylated RpaA (regulator of phycobilisome associated) represses an RpaA-independent output of KOA. A simple mathematical expression successfully simulated two key features of the oscillator—the time of peak KOA and the peak-to-trough amplitude changes. PMID:24043774

  7. Active output state of the Synechococcus Kai circadian oscillator.

    PubMed

    Paddock, Mark L; Boyd, Joseph S; Adin, Dawn M; Golden, Susan S

    2013-10-01

    The mechanisms by which cellular oscillators keep time and transmit temporal information are poorly understood. In cyanobacteria, the timekeeping aspect of the circadian oscillator, composed of the KaiA, KaiB, and KaiC proteins, involves a cyclic progression of phosphorylation states at Ser431 and Thr432 of KaiC. Elucidating the mechanism that uses this temporal information to modulate gene expression is complicated by unknowns regarding the number, structure, and regulatory effects of output components. To identify oscillator signaling states without a complete description of the output machinery, we defined a simple metric, Kai-complex output activity (KOA), that represents the difference in expression of reporter genes between strains that carry specific variants of KaiC and baseline strains that lack KaiC. In the absence of the oscillator, expression of the class 1 paradigm promoter P(kaiBC) was locked at its usual peak level; conversely, that of the class 2 paradigm promoter P(purF) was locked at its trough level. However, for both classes of promoters, peak KOA in wild-type strains coincided late in the circadian cycle near subjective dawn, when KaiC-pST becomes most prevalent (Ser431 is phosphorylated and Thr432 is not). Analogously, peak KOA was detected specifically for the phosphomimetic of KaiC-pST (KaiC-ET). Notably, peak KOA required KaiB, indicating that a KaiBC complex is involved in the output activity. We also found evidence that phosphorylated RpaA (regulator of phycobilisome associated) represses an RpaA-independent output of KOA. A simple mathematical expression successfully simulated two key features of the oscillator-the time of peak KOA and the peak-to-trough amplitude changes.

  8. Development of Radar-Satellite Blended QPF (Quantitative Precipitation Forecast) Technique for heavy rainfall

    NASA Astrophysics Data System (ADS)

    Jang, Sangmin; Yoon, Sunkwon; Rhee, Jinyoung; Park, Kyungwon

    2016-04-01

    Ministry of Land, Infrastructure and Transport (MOLIT) of Korea government and Korea Agency for Infrastructure Technology Advancement (KAIA).

  9. Stability and Noise in the Cyanobacterial Circadian Clock

    NASA Astrophysics Data System (ADS)

    Mihalcescu, Irina

    2008-03-01

    Accuracy in cellular function has to be achieved despite random fluctuations (noise) in the concentrations of different molecular constituents inside and outside the cell. Single cell in vivo monitoring reveals that individual cells generate autonomous circadian rhythms in protein abundance. In multi-cellular organisms, the individual cell rhythms appear to be noisy with drifting phases and frequencies. However, the whole organism is significantly more accurate, the temporal precision being achieved most probably via intercellular coupling of the individual noisy oscillators. In cyanobacteria, we have shown that single cell oscillators are impressively stable and a first estimation rules out strong intercellular coupling. Interestingly, these prokaryotes also have the simplest molecular mechanism at the heart of their circadian clock. In the absence of transcriptional activity in vivo, as well alone in vitro, the three clock proteins KaiA, KaiB and KaiC generate a self-sustained circadian oscillation of autophosphorylation and dephosphorylation. Recent chemical kinetics models provide a possible understanding of the three-protein oscillator, but the measured in vivo stability remains yet unexplained. Is the clock stability a built-in property for each bacterium or does a weak intercellular coupling, make them appear like that? To address this question we first theoretically designed our experiment to be able to distinguish coupling, even weak, from phase diffusion. As the precision of our evaluation increases with the length of the experiments, we continuously monitor, for a couple of weeks, mixtures of cell populations with different initial phases. The inherent experimental noise contribution, initially dominant, is reduced by enhanced statistics. In addition, in situ entrainment experiments confirm our ability to detect a coupling of the circadian oscillator to an external force and to describe explicitly the dynamic change of the mean phase. We report a value

  10. Application of δ18O, δD, 3H-3He and CFCs to characterize the nitrate contamination of groundwater in Eumsung, Korea

    NASA Astrophysics Data System (ADS)

    Ju, Y. J.; Kaown, D.; Hahm, D.; Kim, I.; Lee, S. S.; Koh, E. H.; Kim, M.; Yoon, Y. Y.; Lee, K. K.

    2015-12-01

    We measured the major ions, stable oxygen and hydrogen isotopes, 3H-3He and CFCs concentration in groundwater to identify the characteristics of nitrate contamination and to understand the groundwater recharge patterns. In this study, 17 groundwater samples were collected for 5days (from March 3rd to 7th, 2015) in Eumseong, Korea. In the study area, NO3- concentrations in some groundwater samples (16 of 17) ranged from 5.7 to 103.7 mg/L (avg. 43.3 mg/L), which were substantially higher than the drinking water quality standard (10 mg/L). These excess NO3- inputs in groundwater seem to be originated from the agricultural use of chemical fertilizers because major ions associated with fertilizers were significantly correlated with NO3-. It seems that major groundwater recharge event during monsoon season is highly probable from the analysis of δ18O and δD. The apparent groundwater age using 3H-3He and CFCs varies from 5 to 40 yrs although the study area is small (1 km2). For the samples showed large deficiency of 3He, the sensitivity analysis was performed using NOBLE 90 in an effort to quantify the degassed amount. Since nitrate sources are quite evenly distributed through the field site, groundwater ages from shallow aquifer is inversely correlated with the nitrate concentrations. Our result implies that the 3H-3He ratio can be a useful indicator of tracing the recharge pattern of groundwater but also the nitrate loading characteristic in a small scale agricultural area. Acknowlegments: Financial support was provided by the "R&D Project on Environmental Management of Geologic CO2 Storage" from the KEITI (Project Number: 2014001810003) and the research project of "Advanced Technology for Groundwater Development and Application in Riversides (Geowater+)" in "Water Resources Management Program (code 11 Technology Innovation C05)" of the MOLIT and the KAIA in Korea.

  11. An Integrated Approach on Groundwater Flow and Heat/Solute Transport for Sustainable Groundwater Source Heat Pump (GWHP) System Operation

    NASA Astrophysics Data System (ADS)

    Park, D. K.; Bae, G. O.; Joun, W.; Park, B. H.; Park, J.; Park, I.; Lee, K. K.

    2015-12-01

    for the sustainable GWHP system operation. Acknowledgment: This work was supported by the research project of "Advanced Technology for Groundwater Development and Application in Riversides (Geowater+)" in "Water Resources Management Program (code 11 Technology Innovation C05)" of the MOLIT and the KAIA in Korea.

  12. Architecture and mechanism of the central gear in an ancient molecular timer.

    PubMed

    Egli, Martin

    2017-03-01

    Molecular clocks are the product of natural selection in organisms from bacteria to human and their appearance early in evolution such as in the prokaryotic cyanobacterium Synechococcus elongatus suggests that these timers served a crucial role in genetic fitness. Thus, a clock allows cyanobacteria relying on photosynthesis and nitrogen fixation to temporally space the two processes and avoid exposure of nitrogenase carrying out fixation to high levels of oxygen produced during photosynthesis. Fascinating properties of molecular clocks are the long time constant, their precision and temperature compensation. Although these are hallmarks of all circadian oscillators, the actual cogs and gears that control clocks vary widely between organisms, indicating that circadian timers evolved convergently multiple times, owing to the selective pressure of an environment with a daily light/dark cycle. In S. elongatus , the three proteins KaiA, KaiB and KaiC in the presence of ATP constitute a so-called post-translational oscillator (PTO). The KaiABC PTO can be reconstituted in an Eppendorf tube and keeps time in a temperature-compensated manner. The ease by which the KaiABC clock can be studied in vitro has made it the best-investigated molecular clock system. Over the last decade, structures of all three Kai proteins and some of their complexes have emerged and mechanistic aspects have been analysed in considerable detail. This review focuses on the central gear of the S. elongatus clock and only enzyme among the three proteins: KaiC. Our determination of the three-dimensional structure of KaiC early in the quest for a better understanding of the inner workings of the cyanobacterial timer revealed its unusual architecture and conformational differences and unique features of the two RecA-like domains constituting KaiC. The structure also pinpointed phosphorylation sites and differential interactions with ATP molecules at subunit interfaces, and helped guide experiments to

  13. Operational Characteristics Identification and Simulation Model Verification for Incheon International Airport

    NASA Technical Reports Server (NTRS)

    Eun, Yeonju; Jeon, Daekeun; Lee, Hanbong; Zhu, Zhifan; Jung, Yoon C.; Jeong, Myeongsook; Kim, Hyounkyong; Oh, Eunmi; Hong, Sungkwon; Lee, Junwon

    2016-01-01

    NASA's Airspace Technology Demonstration - 2 (ATD-2) project for technology demonstration of Integrated Arrival/Departure/Surface (ADS) operations at CLT. This study is a part of the international research collaboration between KAIA (Korea Agency for Infrastructure Technology Advancement)/KARI (Korea Aerospace Research Institute) and NASA, which is being conducted to validate the effectiveness of SARDA concept as a controller decision support tool for departure and surface management of ICN. This paper presents the preliminary results of the collaboration effort. It includes investigation of the operational environment of ICN, data analysis for identification of the operational characteristics of the airport, construction and verification of airport simulation model using Surface Operations Simulator and Scheduler (SOSS), NASA's fast-time simulation tool.

  14. Operational Characteristics Identification and Simulation Model Verification for Incheon International Airport

    NASA Technical Reports Server (NTRS)

    Eun, Yeonju; Jeon, Daekeun; Lee, Hanbong; Zhu, Zhifan; Jung, Yoon C.; Jeong, Myeongsook; Kim, Hyounkyong; Oh, Eunmi; Hong, Sungkwon; Lee, Junwon

    2016-01-01

    integrated into NASA's Airspace Technology Demonstration-2 (ATD-2) project for technology demonstration of Integrated Arrival-Departure-Surface (IADS) operations at CLT. This study is a part of the international research collaboration between KAIA (Korea Agency for Infrastructure Technology Advancement), KARI (Korea Aerospace Research Institute) and NASA, which is being conducted to validate the effectiveness of SARDA concept as a controller decision support tool for departure and surface management of ICN. This paper presents the preliminary results of the collaboration effort. It includes investigation of the operational environment of ICN, data analysis for identification of the operational characteristics of the airport, construction and verification of airport simulation model using Surface Operations Simulator and Scheduler (SOSS), NASA's fast-time simulation tool.

  15. Dephosphorylation of the Core Clock Protein KaiC in the Cyanobacterial KaiABC Circadian Oscillator Proceeds via an ATP Synthase Mechanism

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Egli, Martin; Mori, Tetsuya; Pattanayek, Rekha

    The circadian clock of the cyanobacterium Synechococcus elongatus can be reconstituted in vitro from three proteins, KaiA, KaiB, and KaiC in the presence of ATP, to tick in a temperature-compensated manner. KaiC, the central cog of this oscillator, forms a homohexamer with 12 ATP molecules bound between its N- and C-terminal domains and exhibits unusual properties. Both the N-terminal (CI) and C-terminal (CII) domains harbor ATPase activity, and the subunit interfaces between CII domains are the sites of autokinase and autophosphatase activities. Hydrolysis of ATP correlates with phosphorylation at threonine and serine sites across subunits in an orchestrated manner, suchmore » that first T432 and then S431 are phosphorylated, followed by dephosphorylation of these residues in the same order. Although structural work has provided insight into the mechanisms of ATPase and kinase, the location and mechanism of the phosphatase have remained enigmatic. From the available experimental data based on a range of approaches, including KaiC crystal structures and small-angle X-ray scattering models, metal ion dependence, site-directed mutagenesis (i.e., E318, the general base), and measurements of the associated clock periods, phosphorylation patterns, and dephosphorylation courses as well as a lack of sequence motifs in KaiC that are typically associated with known phosphatases, we hypothesized that KaiCII makes use of the same active site for phosphorylation and dephosphorlyation. We observed that wild-type KaiC (wt-KaiC) exhibits an ATP synthase activity that is significantly reduced in the T432A/S431A mutant. We interpret the first observation as evidence that KaiCII is a phosphotransferase instead of a phosphatase and the second that the enzyme is capable of generating ATP, both from ADP and P{sub i} (in a reversal of the ATPase reaction) and from ADP and P-T432/P-S431 (dephosphorylation). This new concept regarding the mechanism of dephosphorylation is also supported

  16. Stirring Astronomy into Theology: Sir Isaac Newton on the Date of the Passion of Christ

    NASA Astrophysics Data System (ADS)

    Belenkiy, Ari; Echagüe, Eduardo Vila

    2007-08-01

    It is known that Sir Isaac Newton suggested a date for the Passion of Christ in the posthumously published Observations upon the Prophecies of Daniel and the Apocalypse of St. John (1733). [This fact was revived recently in Quarterly Journal of the Royal Astronomical Society, 32, Sept 1991]. What was not known is that the first attempts to find that date were made during the early period of his life. The Jewish National and University Library in Jerusalem contains two drafts in Latin, grouped as Yahuda MS 24E under the same title, Rules for the Determination of Easter, which cast some light on Newton's life in the late 1660s - early 1670s. The earlier draft contains multiple references to the virtually forgotten De Annis Christi (1649), written by Villem Lange, the 17th century Danish astronomer and theologian, who might have been Newton's first mentor on the Jewish calendar tradition. The second draft shows not only Newton's close acquaintance with Maimonides' theory of lunar visibility, but also his attempts to simplify the latter's criteria by introducing different parameters. These “astronomical exercises”, announced in a 1673 book, were intended to appear as an appendix to Nicholas Mercator's 1676 book. Both of Yahuda 24E's drafts carry an astronomical table with the solar and lunar positions for the years 30-37 AD, which Newton used to decide on the date of the Passion. The Ordinary Least Squares regression method sends a dubious message; applied to the table's lunar data, OLS strongly suggests a pre-Tychonic origin. The table shows little correlation with solar data coming from Ptolemy, al-Battani, Tycho Brahe, Johannes Kepler, Philip van Lansbergen, Thomas Streete, John Flamsteed, or Newton's own 1702 lunar theory; however, its lunar positions display very high correlations with the Prutenic tables, which were based on Copernicus' De Revolutionibus. Surprisingly, the solar table comes from either 1651 Harmonicon Coeleste or 1669 Astronomia Britannica by

  17. A deep scar in the flank of Tenerife (Canary Islands): Geophysical contribution to tsunami hazard assessment

    NASA Astrophysics Data System (ADS)

    Coppo, Nicolas P.; Schnegg, Pierre-André; Falco, Pierik; Costa, Roberto

    2009-05-01

    Among the high-intensity on-Earth tsunami generating events, seismicity, submarine landslides, and volcano lateral collapses are the most important [Ward, S.H., 2001. Landslide tsunami. J. Geophy. Res. 106, 11201-11215; Holcomb, R.T., Searle, R.C., 1991. Large landslides from oceanic volcanoes. Mar. Geotech. 10, 19-32; Tinti, S., Bortolucci, E., Romagnoli, C., 2000. Computer simulations of tsunamis due to the sector collapse ar Stromboli, Italy. J. Volcano. Geotherm. Res. 96, 103-128; Ward, S.N., Day, S., 2003. Ritter Island Volcano — lateral collapse and the tsunami of 1888. Geophys. J. Int. 154, 891-902; MacGuire, W.J., 2003. Volcano instability and lateral collapse. Revista 1, 33-45]. Offshore bathymetry studies highlighted huge accumulations of large mass-waste flows (up to thousands cubic kilometres) inherited from past lateral collapses or submarine landslides [ Le Friant, A., Boudon, G., Deplus, C., Villemant, B., 2003. Large-scale flank collapse events during the activity of Montagne Pelée, Martinique, Lesser Antilles. J. Geophys. Res. 108, ECV13; Moore, J.G. et al., 1989. Prodigious submarine Landslides on the Hawaiian ridge. J. Geophys. Res. 94, 17465-17484] which spread over more than 100 km off the northern Tenerife (Canary Islands) coastline [Watts, A.B., Masson, D.G., 1995. A giant landslide on the north flank of Tenerife, Canary Islands. J. Geophys. Res. 100, 24487-24498]. Although mechanics and dynamics triggering such catastrophic events follow from combined complex processes and interactions [Hürlimann, M., Garcia-Piera, J.-O., Ledesma, A., 2000. Causes and mobility of large volcanic landslides: application to Tenerife, Canary Islands. J. Volcano. Geotherm. Res. 103, 121-134; Masson, D.G. et al., 2002. Slope failures on the flanks of the western Canary Islands. Earth-Sci. Rev. 57, 1-35; Reid, M.E., Sisson, T.W., Brien, D.L., 2001. Volcano collapse promoted by hydrothermal alteration and edifice shape, Mount Rainier, Washington. Geology 29, 779

  18. Active faulting induced by the slip partitioning in the Lesser Antilles arc

    NASA Astrophysics Data System (ADS)

    Leclerc, Frédérique; Feuillet, Nathalie

    2010-05-01

    ée. Some faults, located between Guadeloupe and Montserrat have throws up to thousand meters. Between St Lucia and Martinique, the St Lucia channel is crosscut by several normal faults with scarps up to 100m-high. These faults extend onshore and cut the southern shore of Martinique. Given their length (~20km), they could produce magnitude 6 or more earthquakes in the most tourist towns of the island (St Anne, St Lucie). Recent coseismic offsets could be identified along most faults in the chirp profiles. Turbidite deposits recognized in the Küllenberg cores could be related to damaging earthquakes. High resolution SAR imagery (25 cm) reveals several coseismic scarps in Les Saintes channel along the faults that ruptured in 2004. References: Feuillet, N., I. Manighetti, and P. Tapponnier, Arc parallel extension and localization of volcanic complexes in guadeloupe, lesser antilles, Journal of Geophysical Research, 107, 2002. Feuillet, N., P. Tapponnier, I. Manighetti, B. Villemant, and G. C. P. King, Differential uplift and tilt of pleistocene reef platforms and quaternary slip Lopez, A.M., S. Stein, T. Dixon, G. Sella, E. Calais, P. Jansma, J. Weber, and P. La Femina, Is there a northern lesser antilles forearc block ?, Geophysical Research Letters, 33, 2006.