The performance of three strawberry varieties on phenological period and quality in Hanyuan County

NASA Astrophysics Data System (ADS)

Che, Meng; Luo, Ya; Ge, Cong; Ling, Yajie; Mo, Qin; Luo, Shu; Tang, Haoru

2018-04-01

In this experiment, `Benihoppe' `Zhang Ji' and `Ning Yu' were used as experimental material, to observe the plant morphology, record the phenological period, investigate the disease situation and determine the quality of strawberry fruit and other indicators and related analysis. Hoping to select a good fruit- type strawberry varieties adapted to the characteristics of Han yuan climate. The result showed that the growth of Benihoppe and Zhang Ji were stronger than Ning Yu, the phenological period of Ning Yu is five days longer than the Benihoppe and Zhang Ji. Ning Yu most highly resistant to the two diseases, followed by Zhang Ji, Benihoppe is the last. In the quality of the fruit, the Benihoppe has the highest average weight and soluble solids. There was no significant difference between Zhang Ji and Ning Yu. However, consumers prefer the Benihoppe, so it is recommended to strengthen the promotion and cultivation of Benihoppe in Han yuan area.

Combined Biology and Bioinformatics Approaches to Breast Cancer

DTIC Science & Technology

2007-10-01

Figure 1-9 B. Bibliography of publications and meeting abstracts: Papers: 1). Ning Wang, Kevin Lin, Zhongxian Lu, Kaye Starr Lam, Xiaoman Xu...Oncogene， 2006, 25(20): 2920-2930. 3). Zhengquan Yu, Kevin Lin，Ambica Bhandari, Joel Spencer, Xiaoman Xu, Ning Wang，Zhongxian Lu，Gordon N Gill...and interacts functionally with LMO4. Developmental Biology, 2006, 299(1):122-36. Abstracts: 1). Zhongxian Lu, Ning Wang, Kevin K. Lin, Kaye Starr

Statistical Smoothing Methods and Image Analysis

DTIC Science & Technology

1988-12-01

83 - 111. Rosenfeld, A. and Kak, A.C. (1982). Digital Picture Processing. Academic Press,Qrlando. Serra, J. (1982). Image Analysis and Mat hematical ...hypothesis testing. IEEE Trans. Med. Imaging, MI-6, 313-319. Wicksell, S.D. (1925) The corpuscle problem. A mathematical study of a biometric problem

On the reported magnetic precursor of the 1993 guam earthquake

USGS Publications Warehouse

Thomas, J.N.; Love, J.J.; Johnston, M.J.S.; Yumoto, K.

2009-01-01

Using 1-second magnetometer data recorded 67 km from the epicenter of the 1993 Mw 7.7 Guam earthquake, Hayakawa et al. (1996) and Miyahara et al. (1999) identify anomalous precursory changes in ultra-low frequency magnetic polarization (the ratio of vertical to horizontal field components). In a check of their results, we compare their data (GAM) with 1-second data from the Kakioka observatory (KAK) in Japan and the global magnetic activity index Kp. We also examine log books kept by USGS staff working on the Guam magnetic observatory. We find (1) analysis problems with both Hayakawa et al. and Miyahara et al., (2) significant correlation between the GAM, KAK, and Kp data, and (3) an absence of identifiable localized anomalous signals occurring prior to the earthquake. The changes we do find in polarization are part of normal global magnetic activity; they are unrelated to the earthquake. Copyright 2009 by the American Geophysical Union.

Proceedings of the Annual Meeting of the Association for Education in Journalism and Mass Communication (81st, Baltimore, Maryland, August 5-8, 1998). Advertising.

ERIC Educational Resources Information Center

Association for Education in Journalism and Mass Communication.

The Advertising section of the Proceedings contains the following 18 papers: "The Birth of Adwatches: Political Advertising Becomes Front-Page News" (Jennifer Greer); "A Cross-Cultural Comparison of the Effects of Source Credibility on Attitudes and Behavioral Intentions" (Kak Yoon, Choong Hyun Kim, and Min-Sun Kim);…

Review of Army Food Related Operations in Hot Desert Environments

DTIC Science & Technology

1991-02-01

the Sahara consists of yogurt and rice pilaf containing shreds of lamb, kid or chicken , hard biscuits called kak, and, during a feast, roast sheep or...encourage fluid consumption, i.e., chicken noodle soup, cocoa, and cider should be increased and unpopular beverage items should be reduced or replaced

Chen Ning Yang, Weak Interactions, and Parity Violation

Science.gov Websites

absolute law of parity conservation had been violated." 2 "Yang overturned Paul ... Dirac's explained that symmetry laws generate the law of conservation. The law of right-left symmetry contributed to the formulation of the law of conservation of parity in 1924. Eventually, this law of conservation was

Comparative transcriptome resources of two Dysosma species (Berberidaceae) and molecular evolution of the CYP719A gene in Podophylloideae.

PubMed

Mao, Yunrui; Zhang, Yonghua; Xu, Chuan; Qiu, Yingxiong

2016-01-01

Dysosma species (Berberidaceae, Podophylloideae) are of great medicinal pharmacogenetic importance and used as model systems to study the drivers and mechanisms of species diversification of temperate plants in East Asia. Recently, we have sequenced the transcriptome of the low-elevation D. versipellis. In this study, we sequenced the transcriptome of the high-elevation D. aurantiocaulis and used comparative genomic approaches to investigate the transcriptome evolution of the two species. We retrieved 53,929 unigenes from D. aurantiocaulis by de novo transcriptome assemblies using the Illumina HiSeq 2000 platform. Comparing the transcriptomes of both species, we identified 4593 orthologs. Estimation of Ka/Ks ratios for 3126 orthologs revealed that none had a Ka/Ks significantly greater than 1, whereas 1273 (Ka/Ks < 0.5, P < 0.05) were inferred to be under purifying selection. A total of 51 primer pairs were successfully designed from 461 EST-SSRs contained in 4593 orthologs. Marker validation assay revealed that 26 (51%) and 41 (80.4%) produced clear fragments with the expected sizes in all Podophylloideae species. Specifically, 19 different sequences of CYP719A were identified from PCR-amplified genomic DNA of all 12 species of Podophylloideae using primers designed from the assembled transcripts. The data further indicated that CYP719A was likely subject to strong selective constraints maintaining only one copy per genome. In Dysosma, there was relaxed purifying selection or more positive selection for high-elevation species. Overall, this study has generated a wealth of molecular resources potentially useful for pharmacogenetic and evolutionary studies in Dysosma and allied taxa. © 2015 John Wiley & Sons Ltd.

Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

PubMed Central

2012-01-01

Background Water stress limits plant survival and production in many parts of the world. Identification of genes and alleles responding to water stress conditions is important in breeding plants better adapted to drought. Currently there are no studies examining the transcriptome wide gene and allelic expression patterns under water stress conditions. We used RNA sequencing (RNA-seq) to identify the candidate genes and alleles and to explore the evolutionary signatures of selection. Results We studied the effect of water stress on gene expression in Eucalyptus camaldulensis seedlings derived from three natural populations. We used reference-guided transcriptome mapping to study gene expression. Several genes showed differential expression between control and stress conditions. Gene ontology (GO) enrichment tests revealed up-regulation of 140 stress-related gene categories and down-regulation of 35 metabolic and cell wall organisation gene categories. More than 190,000 single nucleotide polymorphisms (SNPs) were detected and 2737 of these showed differential allelic expression. Allelic expression of 52% of these variants was correlated with differential gene expression. Signatures of selection patterns were studied by estimating the proportion of nonsynonymous to synonymous substitution rates (Ka/Ks). The average Ka/Ks ratio among the 13,719 genes was 0.39 indicating that most of the genes are under purifying selection. Among the positively selected genes (Ka/Ks > 1.5) apoptosis and cell death categories were enriched. Of the 287 positively selected genes, ninety genes showed differential expression and 27 SNPs from 17 positively selected genes showed differential allelic expression between treatments. Conclusions Correlation of allelic expression of several SNPs with total gene expression indicates that these variants may be the cis-acting variants or in linkage disequilibrium with such variants. Enrichment of apoptosis and cell death gene categories among the

Recognition of the Multi Specularity Objects using the Eigen-Window,

DTIC Science & Technology

1996-02-29

analysis to each eigen-window [21]. The basic idea is that, even if some of the windows are occluded, the remaining windows are still effective and can...K.Ikeuchi, “The Machanical Manipulation of Randomly Oriented Parts”, Scientific American, Vol.251, No.2, pp.100-111, 1984. [5] S.A.Hutchinson and A.C.Kak

Tu(r)ning weakness to strength: Mechanomutable bioinspired materials

DTIC Science & Technology

2017-04-03

into Strength,” Bio-inspired Materials, Potsdam, Germany March 2012 - “Nonlinear behaviour of silk minimizes damage and begets spider web robustness...atoms to structures – how spiders turn weakness into strength,” Society of Engineering Science Meeting, Atlanta, GA Keynote Lecture October 2012...Georgia Tech, October 19, 2015, Atlanta, GA October 2015 DISTRIBUTION A: Distribution approved for public release. 8 - "Multiscale materials by

75 FR 337 - Action Affecting Export Privileges: Ning Wen

Federal Register 2010, 2011, 2012, 2013, 2014

2010-01-05

... DEPARTMENT OF COMMERCE Bureau of Industry and Security [07-BIS-02] Action Affecting Export.... Charges 112-124: 15 CFR 764.2(h)--Taking Action With Intent To Evade the Regulations In connection with... or about September 30, 2004, Wen took actions with intent to evade the provisions of the Regulations...

Glyburide - Novel Prophylaxis and Effective Treatment for Traumatic Brain Injury

DTIC Science & Technology

2010-08-01

tested for incremental lear ning and for rapid lear ning. Incremental learning was significantly abnormal on days 14–18, as were the memory probe and...Computational biology - modeling of primary blast effects on the central nervous system. Neuroimage. 47 Suppl 2, T10-T20. MOSS,W.C., KING ,M.J., and

Evolutionary Dynamics of the Gametologous CTNNB1 Gene on the Z and W Chromosomes of Snakes.

PubMed

Laopichienpong, Nararat; Muangmai, Narongrit; Chanhome, Lawan; Suntrarachun, Sunutcha; Twilprawat, Panupon; Peyachoknagul, Surin; Srikulnath, Kornsorn

2017-03-01

Snakes exhibit genotypic sex determination with female heterogamety (ZZ males and ZW females), and the state of sex chromosome differentiation also varies among lineages. To investigate the evolutionary history of homologous genes located in the nonrecombining region of differentiated sex chromosomes in snakes, partial sequences of the gametologous CTNNB1 gene were analyzed for 12 species belonging to henophid (Cylindrophiidae, Xenopeltidae, and Pythonidae) and caenophid snakes (Viperidae, Elapidae, and Colubridae). Nonsynonymous/synonymous substitution ratios (Ka/Ks) in coding sequences were low (Ka/Ks < 1) between CTNNB1Z and CTNNB1W, suggesting that these 2 genes may have similar functional properties. However, frequencies of intron sequence substitutions and insertion–deletions were higher in CTNNB1Z than CTNNB1W, suggesting that Z-linked sequences evolved faster than W-linked sequences. Molecular phylogeny based on both intron and exon sequences showed the presence of 2 major clades: 1) Z-linked sequences of Caenophidia and 2) W-linked sequences of Caenophidia clustered with Z-linked sequences of Henophidia, which suggests that the sequence divergence between CTNNB1Z and CTNNB1W in Caenophidia may have occurred by the cessation of recombination after the split from Henophidia.

Complete chloroplast genome of Tetragonia tetragonioides: Molecular phylogenetic relationships and evolution in Caryophyllales.

PubMed

Choi, Kyoung Su; Kwak, Myounghai; Lee, Byoungyoon; Park, SeonJoo

2018-01-01

The chloroplast genome of Tetragonia tetragonioides (Aizoaceae; Caryophyllales) was sequenced to provide information for studies on phylogeny and evolution within Caryophyllales. The chloroplast genome of Tetragonia tetragonioides is 149,506 bp in length and includes a pair of inverted repeats (IRs) of 24,769 bp that separate a large single copy (LSC) region of 82,780 bp and a small single copy (SSC) region of 17,188 bp. Comparative analysis of the chloroplast genome showed that Caryphyllales species have lost many genes. In particular, the rpl2 intron and infA gene were not found in T. tetragonioides, and core Caryophyllales lack the rpl2 intron. Phylogenetic analyses were conducted using 55 genes in 16 complete chloroplast genomes. Caryophyllales was found to divide into two clades; core Caryophyllales and noncore Caryophyllales. The genus Tetragonia is closely related to Mesembryanthemum. Comparisons of the synonymous (Ks), nonsynonymous (Ka), and Ka/Ks substitution rates revealed that nonsynonymous substitution rates were lower than synonymous substitution rates and that Ka/Ks rates were less than 1. The findings of the present study suggest that most genes are a purified selection.

Enhancing Classroom Effectiveness through Social Networking Tools

ERIC Educational Resources Information Center

Kurthakoti, Raghu; Boostrom, Robert E., Jr.; Summey, John H.; Campbell, David A.

2013-01-01

To determine the usefulness of social networking Web sites such as Ning.com as a communication tool in marketing courses, a study was designed with special concern for social network use in comparison to Blackboard. Students from multiple marketing courses were surveyed. Assessments of Ning.com and Blackboard were performed both to understand how…

Legacy and currently used pesticides in the atmospheric environment of Lake Victoria, East Africa.

PubMed

Arinaitwe, Kenneth; Kiremire, Bernard T; Muir, Derek C G; Fellin, Phil; Li, Henrik; Teixeira, Camilla; Mubiru, Drake N

2016-02-01

The Lake Victoria watershed has extensive agricultural activity with a long history of pesticide use but there is limited information on historical use or on environmental levels. To address this data gap, high volume air samples were collected from two sites close to the northern shore of Lake Victoria; Kakira (KAK) and Entebbe (EBB). The samples, to be analyzed for pesticides, were collected over various periods between 1999 and 2004 inclusive (KAK 1999-2000, KAK 2003-2004, EBB 2003 and EBB 2004 sample sets) and from 2008 to 2010 inclusive (EBB 2008, EBB 2009 and EBB 2010 sample sets). The latter sample sets (which also included precipitation samples) were also analyzed for currently used pesticides (CUPs) including chlorpyrifos, chlorthalonil, metribuzin, trifluralin, malathion and dacthal. Chlorpyrifos was the predominant CUP in air samples with average concentrations of 93.5, 26.1 and 3.54 ng m(-3) for the EBB 2008, 2009, 2010 sample sets, respectively. Average concentrations of total endosulfan (ΣEndo), total DDT related compounds (ΣDDTs) and hexachlorocyclohexanes (ΣHCHs) ranged from 12.3-282, 22.8-130 and 3.72-81.8 pg m(-3), respectively, for all the sample sets. Atmospheric prevalence of residues of persistent organic pollutants (POPs) increased with fresh emissions of endosulfan, DDT and lindane. Hexachlorobenzene (HCB), pentachlorobenzene (PeCB) and dieldrin were also detected in air samples. Transformation products, pentachloroanisole, 3,4,5-trichloroveratrole and 3,4,5,6-tetrachloroveratrole, were also detected. The five most prevalent compounds in the precipitation samples were in the order chlorpyrifos>chlorothalonil>ΣEndo>ΣDDTs>ΣHCHs with average fluxes of 1123, 396, 130, 41.7 and 41.3 ng m(-2)sample(-1), respectively. PeCB exceeded HCB in precipitation samples. The reverse was true for air samples. Backward air trajectories suggested transboundary and local emission sources of the analytes. The results underscore the need for a concerted

Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum).

PubMed

Tao, Si-Qi; Cao, Bin; Tian, Cheng-Ming; Liang, Ying-Mei

2017-08-23

Rust fungi constitute the largest group of plant fungal pathogens. However, a paucity of data, including genomic sequences, transcriptome sequences, and associated molecular markers, hinders the development of inhibitory compounds and prevents their analysis from an evolutionary perspective. Gymnosporangium yamadae and G. asiaticum are two closely related rust fungal species, which are ecologically and economically important pathogens that cause apple rust and pear rust, respectively, proved to be devastating to orchards. In this study, we investigated the transcriptomes of these two Gymnosporangium species during the telial stage of their lifecycles. The aim of this study was to understand the evolutionary patterns of these two related fungi and to identify genes that developed by selection. The transcriptomes of G. yamadae and G. asiaticum were generated from a mixture of RNA from three biological replicates of each species. We obtained 49,318 and 54,742 transcripts, with N50 values of 1957 and 1664, for G. yamadae and G. asiaticum, respectively. We also identified a repertoire of candidate effectors and other gene families associated with pathogenicity. A total of 4947 pairs of putative orthologues between the two species were identified. Estimation of the non-synonymous/synonymous substitution rate ratios for these orthologues identified 116 pairs with Ka/Ks values greater than1 that are under positive selection and 170 pairs with Ka/Ks values of 1 that are under neutral selection, whereas the remaining 4661 genes are subjected to purifying selection. We estimate that the divergence time between the two species is approximately 5.2 Mya. This study constitutes a de novo assembly and comparative analysis between the transcriptomes of the two rust species G. yamadae and G. asiaticum. The results identified several orthologous genes, and many expressed genes were identified by annotation. Our analysis of Ka/Ks ratios identified orthologous genes subjected to

Social Networking Services in E-Learning

ERIC Educational Resources Information Center

Weber, Peter; Rothe, Hannes

2016-01-01

This paper is a report on the findings of a study conducted on the use of the social networking service NING in a cross-location e-learning setting named "Net Economy." We describe how we implemented NING as a fundamental part of the setting through a special phase concept and team building approach. With the help of user statistics, we…

Social Networking Services in E-Learning

ERIC Educational Resources Information Center

Weber, Peter; Rothe, Hannes

2012-01-01

This paper is a report on the findings of a study conducted on the use of the social networking service NING in a cross-location e-learning setting named "Net Economy." We describe how we implemented NING as a fundamental part of the setting through a special phase concept and team building approach. With the help of user statistics, we examine…

Latent Space Tracking from Heterogeneous Data with an Application for Anomaly Detection

DTIC Science & Technology

2015-11-01

specific, if the anomaly behaves as a sudden outlier after which the data stream goes back to normal state, then the anomalous data point should be...introduced three types of anomalies , all of them are sudden outliers . 438 J. Huang and X. Ning Table 2. Synthetic dataset: AUC and parameters method...Latent Space Tracking from Heterogeneous Data with an Application for Anomaly Detection Jiaji Huang1(B) and Xia Ning2 1 Department of Electrical

Binary Color Vision for Industrial Automation.

DTIC Science & Technology

1983-02-28

A . and Kak, A .: Digital Picture Processing. Academic Press, New York, 1976. (17) Connah, D. M . and Fishbourne, C . A .: "The...TEST CHART NATIONAL RUR AU OF STANDAR[l, A - -IA • . . ........ ......... ’ ... ’" ( ( READ INSTR C IN R REPORT DOCUMENTATION PAGE H"’FORE COMPLETN...image is defined by a function of 2-D posi , say I( m ,n), defined at chosen grid points of the image. For a achromatic grey-scale image, the function

[Antagonistic effects of cholinergic drugs on xylazine induced sedation].

PubMed

Ding, R G; Huang, S J; Yang, J S

1993-01-01

Xylazine induced sedation in mice was observed as a kind of inhibition of exploratory activity. The reversible cholinesterase inhibitor cui xing ning (0.25-1.0 m.kg-1), the precursor of acetylcholine, choline bromide (100-300 mg.kg-1), and the M-receptor agonist arecoline (1.0-5.0 mg.kg-1) were shown to significantly antagonize xylazine (5.0 mg.kg-1) induced sedation. While cui xing ning (0.25 mg.kg-1) shifted the dose-response curve of xylazine induced sedation to the right, hemicholinum-3 (3 micrograms icv), which inhibits the synthesis of acetylcholine, shifted the dose-response curve to the left. These results suggest that the xylazine induced sedation may be partly due to a reduced central cholinergic function. Cui xing ning may have some value in the treatment of xylazine overdose and antagonize the anesthesia induced by anesthetics combined with xylazine.

Pi2 Pulsations During Extremely Quiet Geomagnetic Condition: Van Allen Probe Observations

NASA Astrophysics Data System (ADS)

Ghamry, Essam

2017-06-01

A ultra low frequency (ULF) wave, Pi2, has been reported to occur during periods of extremely quiet magnetospheric and solar wind conditions. And no statistical study on the Pi2 has been performed during extremely quiet conditions, using satellite observations to the author’s knowledge. Also Pi2 pulsations in the space fluxgate magnetometers near perigee failed to attract scientist’s attention previously. In this paper, Pi2 pulsations detected by the Van Allen probe satellites (VAP-A & VAP-B) were investigated statistically. During the period from October 2012 to December 2014, ninety six Pi2 events were identified using VAP when Kp = 0 while using Kakioka (KAK, L = 1.23) as a reference ground station. Seventy five events had high coherence between VAP-Bz and H components at KAK station. As a result, it was found that 77 % of the events had power spectra between 5 and 12 mHz, which differs from the regular Pi2 band range of from 6.7 to 25 mHz. In addition, it was shown that it is possible to observe Pi2 pulsations from space fluxgate magnetometers near perigee. Twenty two clean Pi2 pulsations were found where L < 4 and four examples of Pi2 oscillations at different L shells are presented in this paper.

Improving Cancer Detection and Dose Efficiency in Dedicated Breast Cancer CT

DTIC Science & Technology

2011-02-01

17. A. E. Burgess, F. L. Jacobson, and P. F. Judy , “ Human observer detection experiments with mammograms and power-law noise,” Med. Phys., Vol. 28...Jacobson F L and Judy P F 2001 Human observer detection experiments with mammograms and power-law noise Med. Phys. 28 419–37 Crawford C R and Kak A C 1979...anthropomorphic head phantom was designed for realistically simulating human head [12], it features not only a natural human skeleton but also contrast

Optoelectronics: Continuously Spatial-Wavelength-Tunable Nanowire Lasers on a Single Chip

DTIC Science & Technology

2014-01-28

journals (N/A for none) 1. P. L. Nichols, Z. Liu, L. Yin, and C. Z. Ning, CdxPb1- xS Alloy Nanowires and Heterostructures with Simultaneous Emission in Mid...multiple-bandgap solar cells using spatially composition-graded CdxPb1- xS nanowires on a single substrate: a design study, Optics Express (07 2011...Quaternary ZnCdSSe Alloy Nanowires with Tunable Light Emission Between 350 nm and 710 nm on a Single Substrate, (11 2009) C.Z. Ning, A.L. Pan, and

Identification and Quantitation of Anthocyanins in Purple-Fleshed Sweet Potatoes Cultivated in China by UPLC-PDA and UPLC-QTOF-MS/MS.

PubMed

He, Wei; Zeng, Maomao; Chen, Jie; Jiao, Yuzhi; Niu, Fuxiang; Tao, Guanjun; Zhang, Shuang; Qin, Fang; He, Zhiyong

2016-01-13

The identification and quantitation of the anthocyanins in 12 purple-fleshed sweet potato (PFSP) cultivars ('Jihei 1', 'Xuzi 3', 'Xuzi 6', 'Zhezi 4', 'Ningzi 1', 'Ningzi 2', 'Ningzi 3', 'Ning 2-2', 'Ning 6-8', 'Guangzi 1', 'Ziluolan', and 'Qinzi 1') in China were carried out using a combination of ultraperformance liquid chromatography-photodiode array (UPLC-PDA), quadrupole-time-of-flight mass spectrometry (QTOF-MS), and tandem mass spectrometry (MS/MS) analyses. Thirteen acylated anthocyanins were tentatively characterized, including two new PFSP anthocyanins, cyanidin 3-caffeoyl-vanilloyl sophoroside-5-glucoside and peonidin 3-caffeoyl-vanilloyl sophoroside-5-glucoside. The quantitative analyses of these anthocyanins were conducted using cyanidin 3-O-glucoside as a standard. The total anthocyanin content of the PFSPs depended on the cultivar. The five PFSP cultivars with the highest content of anthocyanins were 'Jihei 1', 'Xuzi 3', 'Zhezi 4', 'Ziluolan', and 'Qinzi 1'. This is the first report of the 'Ningzi 2', 'Ningzi 3', and 'Ning 2-2' PFSP cultivars containing only diacylated anthocyanins and of the 'Xuzi 6' cultivar containing single anthocyanidin-based anthocyanins.

Development and Evaluation of Ning Social Network for Teaching Training Online Surveillance

ERIC Educational Resources Information Center

Mohd Nawi, Mohd Aliff; Jamsari, Ezad Azraai; Sulaiman, Adibah; Hamzah, Mohd Isa

2013-01-01

Supervision of teaching practice is an important aspect of training teachers in improving their teaching skills. Barriers such as distance and time factor are the constraints faced by the lecturers at the National University of Malaysia to communicate with the teacher trainees under their supervision. Therefore, this study aims to develop and…

Process Writing and the Internet: Blogs and Ning Networks in the Classroom

ERIC Educational Resources Information Center

Boas, Isabela Villas

2011-01-01

In contrast to the product approach to writing, which is based on studying and replicating textual models, the process approach involves multiple and repeated steps that compel the writer to closely consider the topic, language, purpose for writing, and social reality of an audience. In addition to discussing the benefits of the process approach…

The roles of gene duplication, gene conversion and positive selection in rodent Esp and Mup pheromone gene families with comparison to the Abp family.

PubMed

Karn, Robert C; Laukaitis, Christina M

2012-01-01

Three proteinaceous pheromone families, the androgen-binding proteins (ABPs), the exocrine-gland secreting peptides (ESPs) and the major urinary proteins (MUPs) are encoded by large gene families in the genomes of Mus musculus and Rattus norvegicus. We studied the evolutionary histories of the Mup and Esp genes and compared them with what is known about the Abp genes. Apparently gene conversion has played little if any role in the expansion of the mouse Class A and Class B Mup genes and pseudogenes, and the rat Mups. By contrast, we found evidence of extensive gene conversion in many Esp genes although not in all of them. Our studies of selection identified at least two amino acid sites in β-sheets as having evolved under positive selection in the mouse Class A and Class B MUPs and in rat MUPs. We show that selection may have acted on the ESPs by determining K(a)/K(s) for Exon 3 sequences with and without the converted sequence segment. While it appears that purifying selection acted on the ESP signal peptides, the secreted portions of the ESPs probably have undergone much more rapid evolution. When the inner gene converted fragment sequences were removed, eleven Esp paralogs were present in two or more pairs with K(a)/K(s) >1.0 and thus we propose that positive selection is detectable by this means in at least some mouse Esp paralogs. We compare and contrast the evolutionary histories of all three mouse pheromone gene families in light of their proposed functions in mouse communication.

Development of CASI (Computer Aided Speckle Interferometry) and LSS (Laser Speckle Sensor) with Application to Material Response under High Strain Rate, High Temperature, Vibration and Fatigue

DTIC Science & Technology

1991-02-10

25. 1"S. revised mcp recerved Apnil 10, 19W, thnnsmte into a VAX- 11� computer. Fringf_ spacing * acceped for puablI Al 126. 1990 This paPetis a...W.Il.Peters, W.F.llanson mtid S.WI.-MN1il, "Detcrintation of dis. placements using an improved (digit al rorrela Ii’’i ii’’ h. . 111 aad Vision Y*omput ing...experiimental mcchaniics", Experiment al Mechianics, Vol.25, No.3, pp 232-.1-1 (1985). 5.~ A.Rosenfeld and A.C.Kak, Digital Pict nre processing, Vol 1

75 FR 17693 - Certain Frozen Warmwater Shrimp from Brazil, India, and Thailand: Notice of Initiation of...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-07

... Exports Star Agro Marine Exports Private Limited Sterling Foods Sun-Bio Technology Ltd Supreme Exports... Xian-Ning Seafood Co., Ltd Yeenin Frozen Foods Co., Ltd YHS Singapore Pte ZAFCO TRDG \\3\\ In the 2007...

DRINKING WATER ARSENIC AND PERINATAL OUTCOMES

EPA Science Inventory

Drinking Water Arsenic and Perinatal Outcomes
DT Lobdell, Z Ning, RK Kwok, JL Mumford, ZY Liu, P Mendola

Many studies have documented an association between drinking water arsenic (DWA) and cancer, vascular diseases, and dermatological outcomes, but few have investigate...

Integrating UAS Flocking Operations with Formation Drag Reduction

DTIC Science & Technology

2014-03-01

20   Figure 8: Close vs . Extended Formation Flight (FF) Comparison (Ning 2011, 12)......... 24   Figure 9: Basic Guidance Control...and Near Misses vs . Flock Size... vs . Longitudinal Spacing............................ 52   Figure 21: Flock Cumulative Fuel Savings vs . Distance Between Turns

Venue Recommendation and Web Search Based on Anchor Text

DTIC Science & Technology

2014-11-01

plus . . . Food, cafes, desserts, sandwiches, coffee, ice cream, gourmet, local flavor, tea, bbq, dim sum, sushi, vege- tarian, chicken wings...golf, bowling, yoga, comedy clubs, Pilates, sports teams, Nightlife, bars, wine bars, juice bars, event plan- ning, dance clubs, gastro pub, lounges

Systemic and cerebral exposure to and pharmacokinetics of flavonols and terpene lactones after dosing standardized Ginkgo biloba leaf extracts to rats via different routes of administration

PubMed Central

Chen, Feng; Li, Li; Xu, Fang; Sun, Yan; Du, Feifei; Ma, Xutao; Zhong, Chenchun; Li, Xiuxue; Wang, Fengqing; Zhang, Nating; Li, Chuan

2013-01-01

BACKGROUND AND PURPOSE Flavonols and terpene lactones are putatively responsible for the properties of Ginkgo biloba leaf extracts that relate to prevention and treatment of cardiovascular disease and cerebral insufficiency. Here, we characterized rat systemic and cerebral exposure to these ginkgo compounds after dosing, as well as the compounds’ pharmacokinetics. EXPERIMENTAL APPROACH Rats received single or multiple doses of ShuXueNing injection (prepared from GBE50 for intravenous administration) or GBE50 (a standardized extract of G. biloba leaves for oral administration). Brain delivery of the ginkgo compounds was assessed with microdialysis. Various rat samples were analysed using liquid chromatography/mass spectrometry. KEY RESULTS Slow terminal elimination features of the flavonols counterbalanced the influence of poor oral bioavailability on their systemic exposure levels, which also resulted in significant accumulation of the compounds in plasma during the subchronic treatment with ShuXueNing injection and GBE50. Unlike the flavonols, the terpene lactones had poor enterohepatic circulation due to their rapid renal excretion and unknown metabolism. The flavonol glycosides occurred as major forms in plasma after dosing with ShuXueNing injection, while the flavonol aglycone conjugates were predominant in plasma after dosing with GBE50. Cerebral exposure was negligible for the flavonols and low for the terpene lactones. CONCLUSION AND IMPLICATIONS Unlike the significant systemic exposure levels, the levels of cerebral exposure to the flavonols and terpene lactones are low. The elimination kinetic differences between the two classes of ginkgo compounds influence their relative systemic exposure levels. The information gained is relevant to linking ginkgo administration to the medicinal effects. PMID:23808355

PREGNANCY AND PERINATAL OUTCOMES IN RELATION TO DRINKING WATER ARSENIC EXPOSURE IN BAMEN, INNER MONGOLIA, CHINA

EPA Science Inventory

Pregnancy and Perinatal Outcomes in Relation to Drinking Water Arsenic Exposure in BaMen, Inner Mongolia, China
Danelle T. Lobdell, Zhixiong Ning, Richard K. Kwok, Judy Mumford, Zhi Yi Liu, Pauline Mendola

Introduction: Close to 40 million people worldwide are exposed t...

European Scientific Notes. Volume 38, Number 7.

DTIC Science & Technology

1984-07-01

ExetSystems 41/184 Several kinds of meical aa have been represented as flowcharts and tables and used as a basis for expert systems. The data are being...Schuljahres- beginn (Controversy over School Begin- ning); Kognitive Komplexitat (Cognitive Complexity); Moralisches Verhalten NEW PUBLICATIONS FROM

Bamboo vs. crops: An integrated emergy and economic evaluation of using bamboo to replace crops in south Sichuan Province, China

EPA Science Inventory

Based on long-term monitoring conducted in Chang-ning county, a pilot site of the ‘Grain for Green Program’ (GFGP), an integrated emergy and economic method was applied to evaluate the dynamic ecological-economic performance of 3 kinds of bamboo systems planted on slo...

[Mollusks community associated to Thalassia testudinum (Bank et Köning 1805), in Mochima Bay, Venezuela].

PubMed

Díaz, Oscar Díaz; Liñero-Arana, Ildefonso

2004-01-01

To study the community of mollusks associated to Thalassia testudinum, monthly samplings were made between January and December 2002 in four localities of the Bay of Mochima. A PVC corer, of 14.8 cm of diameter, was used for sampling; eight monthly replicates were taken in each locality. Each core was sifted in a sieve of 1mm of mesh opening, the mollusks were fixed in 8% formaldehide solution in sea water. 473 mollusks were analyzed and 40 species, belonging to 29 families, were identified. Mangle Quemao displayed the greater abundance, whereas Varadero the minor. Shannon-Weaver diversity average ranged between 2.02+/-0.43 bits.ind(-1) (Mangle Quemao) and 1.42+/-0.95 bits.ind(-1) (Toporo). ANOVA analysis showed significant differences in abundances of mollusks among localities.

76 FR 18761 - Worldwide Logistics Co., Ltd.; Possible Violations of Sections 10(a)(1) and 10(b)(2) of the...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-05

... FEDERAL MARITIME COMMISSION [Docket No. 11-04] Worldwide Logistics Co., Ltd.; Possible Violations... Worldwide Logistics Co., Ltd. (Worldwide) is a company based in the People's Republic of China, providing.... 228 Ning Guo Road, Yangpu District, Shanghai, PRC 200090. It is a part of the Worldwide Logistics...

ESTIMATING RESIDENTIAL EXPOSURE TO DRINKING WATER ARSENIC IN INNER MONGOLIA, CHINA FOR EPIDEMIOLOGIC STUDIES

EPA Science Inventory

ESTIMATING RESIDENTIAL EXPOSURE TO DRINKING WATER ARSENIC IN INNER MONGOLIA, CHINA FOR EPIDEMIOLOGIC STUDIES

Richard Kwok1, Pauline Mendola1 Zhixiong Ning2, Zhiyi Liu2 and Judy Mumford1

1) Epidemiology and Biomarkers Branch, Human Studies Division, NHEERL, US EPA, R...

Journal of Special Operations Medicine, Volume 4, Edition 4, Fall 2004

DTIC Science & Technology

2004-01-01

Zaichik D, Caspi G, Kotler D, Freund HR. Evacuation priorities in mass casualty terror-related events: Implications for contingency plan- ning. Annals of...John Prados Vietnam Above The Tree Tops: A Forward Air Controller Reports John F Flanagan Vietnam in American Literature Philip H Melling Vietnam

Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors

PubMed Central

Peng, Suna; Tao, Ping; Xu, Feng; Wu, Aiping; Huo, Weige; Wang, Jinxiang

2016-01-01

Brassinosteroids (BR) play important roles in plant growth and development. Although BR receptors have been intensively studied in Arabidopsis, the BR receptors in soybean remain largely unknown. Here, in addition to the known receptor gene Glyma06g15270 (GmBRI1a), we identified five putative BR receptor genes in the soybean genome: GmBRI1b, GmBRL1a, GmBRL1b, GmBRL2a, and GmBRL2b. Analysis of their expression patterns by quantitative real-time PCR showed that they are ubiquitously expressed in primary roots, lateral roots, stems, leaves, and hypocotyls. We used rapid amplification of cDNA ends (RACE) to clone GmBRI1b (Glyma04g39160), and found that the predicted amino acid sequence of GmBRI1b showed high similarity to those of AtBRI1 and pea PsBRI1. Structural modeling of the ectodomain also demonstrated similarities between the BR receptors of soybean and Arabidopsis. GFP-fusion experiments verified that GmBRI1b localizes to the cell membrane. We also explored GmBRI1b function in Arabidopsis through complementation experiments. Ectopic over-expression of GmBRI1b in Arabidopsis BR receptor loss-of-function mutant (bri1-5 bak1-1D) restored hypocotyl growth in etiolated seedlings; increased the growth of stems, leaves, and siliques in light; and rescued the developmental defects in leaves of the bri1-6 mutant, and complemented the responses of BR biosynthesis-related genes in the bri1-5 bak1-D mutant grown in light. Bioinformatics analysis demonstrated that the six BR receptor genes in soybean resulted from three gene duplication events during evolution. Phylogenetic analysis classified the BR receptors in dicots and monocots into three subclades. Estimation of the synonymous (Ks) and the nonsynonymous substitution rate (Ka) and selection pressure (Ka/Ks) revealed that the Ka/Ks of BR receptor genes from dicots and monocots were less than 1.0, indicating that BR receptor genes in plants experienced purifying selection during evolution. PMID:27338344

Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers.

PubMed

Wang, Juan; Zhang, Li; Zhang, Qi-Lin; Zhou, Min-Qiang; Wang, Xiao-Tong; Yang, Xing-Zhuo; Yuan, Ming-Long

2017-01-01

The family Miridae is one of the most species-rich families of insects. To better understand the diversity and evolution of mirids, we determined the mitogenome of Lygus pratenszs and re-sequenced the mitogenomes of four mirids (i.e., Apolygus lucorum , Adelphocoris suturalis , Ade. fasciaticollis and Ade. lineolatus ). We performed a comparative analysis for 15 mitogenomic sequences representing 11 species of five genera within Miridae and evaluated the potential of these mitochondrial genes as molecular markers. Our results showed that the general mitogenomic features (gene content, gene arrangement, base composition and codon usage) were well conserved among these mirids. Four protein-coding genes (PCGs) ( cox1 , cox3 , nad1 and nad3 ) had no length variability, where nad5 showed the largest size variation; no intraspecific length variation was found in PCGs. Two PCGs ( nad4 and nad5 ) showed relatively high substitution rates at the nucleotide and amino acid levels, where cox1 had the lowest substitution rate. The Ka/Ks values for all PCGs were far lower than 1 (<0.59), but the Ka/Ks values of cox1 -barcode sequences were always larger than 1 (1.34 -15.20), indicating that the 658 bp sequences of cox1 may be not the appropriate marker due to positive selection or selection relaxation. Phylogenetic analyses based on two concatenated mitogenomic datasets consistently supported the relationship of Nesidiocoris + ( Trigonotylus + ( Adelphocoris + ( Apolygus + Lygus ))), as revealed by nad4 , nad5 , rrnL and the combined 22 transfer RNA genes (tRNAs), respectively. Taken sequence length, substitution rate and phylogenetic signal together, the individual genes ( nad4 , nad5 and rrnL ) and the combined 22 tRNAs could been used as potential molecular markers for Miridae at various taxonomic levels. Our results suggest that it is essential to evaluate and select suitable markers for different taxa groups when performing phylogenetic, population genetic and species

HEALTH EFFECTS OF CHRONIC EXPOSURE TO ARSENIC VIA DRINKING WATER IN INNER MONGOLIA: IV. DISTRIBUTION OF ARSENIC CONCENTRATIONS IN WELLS

EPA Science Inventory

HEALTH EFFECTS OF CHRONIC EXPOSURE TO ARSENIC VIA DRINKING WATER IN INNER MONGOLIA:
IV. DISTRIBUTION OF ARSENIC CONCENTRATIONS IN WELLS

Zhixiong Ning, B.S., Zhiyi Liu,B.S., Shiying Zhang, B.S., Chenglong Ma, B.S., Inner Mongolia Ba Men Anti-epidemic Station, Michael Ri...

Three Dimensionally Interconnected Silicon Nanomembranes for Optical Phased Array (OPA) and Optical True Time Delay (TTD) Applications

DTIC Science & Technology

2012-06-01

Nanophotonic Waveguides," J. Lightwave Technol. 25 (1), 151-156 (2007). [7-4] Yongbo Tang, Zhechao Wang, Lech Wosinski, Urban Westergren, and Sailing...Waveguides," Photonics Journal, IEEE 3 (2), 203-208 (2011). [8-25] Zhechao Wang, Ning Zhu, Yongbo Tang, Lech Wosinski, Daoxin Dai, and Sailing He

U.S. Department of Agriculture Need for Improved Workforce Planning

DTIC Science & Technology

1990-03-01

For example, op organized a task force, consisting of mostly agency personnel, on workforce plan- ning as part of a new marketing strategy aimed at...departmental policy on workforce planning. As another part of this marketing strategy , op is developing a UsDA-wide recruitment plan. The purpose of

Using Social Networking for Online Role-Plays to Develop Students' Argumentative Strategies

ERIC Educational Resources Information Center

Beach, Richard; Doerr-Stevens, Candance

2011-01-01

Social networking sites may include argumentative writing about particular issues in which participants adopt competing perspective and discourses on those issues. This study examined roles and discourses adopted by high school students participating in an online role-play conducted on a Ning platform regarding their school's Internet policies on…

Systemic and cerebral exposure to and pharmacokinetics of flavonols and terpene lactones after dosing standardized Ginkgo biloba leaf extracts to rats via different routes of administration.

PubMed

Chen, Feng; Li, Li; Xu, Fang; Sun, Yan; Du, Feifei; Ma, Xutao; Zhong, Chenchun; Li, Xiuxue; Wang, Fengqing; Zhang, Nating; Li, Chuan

2013-09-01

Flavonols and terpene lactones are putatively responsible for the properties of Ginkgo biloba leaf extracts that relate to prevention and treatment of cardiovascular disease and cerebral insufficiency. Here, we characterized rat systemic and cerebral exposure to these ginkgo compounds after dosing, as well as the compounds' pharmacokinetics. Rats received single or multiple doses of ShuXueNing injection (prepared from GBE50 for intravenous administration) or GBE50 (a standardized extract of G. biloba leaves for oral administration). Brain delivery of the ginkgo compounds was assessed with microdialysis. Various rat samples were analysed using liquid chromatography/mass spectrometry. Slow terminal elimination features of the flavonols counterbalanced the influence of poor oral bioavailability on their systemic exposure levels, which also resulted in significant accumulation of the compounds in plasma during the subchronic treatment with ShuXueNing injection and GBE50. Unlike the flavonols, the terpene lactones had poor enterohepatic circulation due to their rapid renal excretion and unknown metabolism. The flavonol glycosides occurred as major forms in plasma after dosing with ShuXueNing injection, while the flavonol aglycone conjugates were predominant in plasma after dosing with GBE50. Cerebral exposure was negligible for the flavonols and low for the terpene lactones. Unlike the significant systemic exposure levels, the levels of cerebral exposure to the flavonols and terpene lactones are low. The elimination kinetic differences between the two classes of ginkgo compounds influence their relative systemic exposure levels. The information gained is relevant to linking ginkgo administration to the medicinal effects. © 2013 The Authors. British Journal of Pharmacology published by John Wiley &. Sons Ltd on behalf of The British Pharmacological Society.

RESIDENTIAL EXPOSURE TO DRINKING WATER ARSENIC IN INNER MONGOLIA, CHINA

EPA Science Inventory

Residential exposure to drinking water arsenic in Inner Mongolia, China
Zhixiong Ning1, Richard K. Kwok2, Zhiyi Liu1, Shiying Zhang1, Chenglong Ma1, Danelle T. Lobdell2, Michael Riediker3 and Judy L. Mumford2
1) Institute of Endemic Disease for Prevention and Treatment in I...

Registration of near-isogenic winter wheat germplasm contrasting in Fhb1 for fusarium head blight resistance

USDA-ARS?s Scientific Manuscript database

The Chinese wheat Ning7840 (Triticum aestivum L.) contains Fhb1, a major quantitative trait locus (QTL) for Fusarium head blight (FHB) resistance, and has been widely used as a resistant parent in breeding programs worldwide, but due to its poor adaptation in the US, its progenies usually exhibit re...

Air and Space Power Journal. Volume 20, Number 3, Fall 2006

DTIC Science & Technology

2006-01-01

ning focus to support of the Independent Electoral Commission of Iraq and election preparations. As the corps and its major sub- ordinate commands...Definición y ámbito de aplicación del Derecho Internacional Humanitario,” Revista Nacional de Derecho Aeronáutico y Espacial 3 (1989): 19. 9

Self-Regulation during E-Learning: Using Behavioural Evidence from Navigation Log Files

ERIC Educational Resources Information Center

Jeske, D.; Backhaus, J.; Stamov Roßnagel, C.

2014-01-01

The current paper examined the relationship between perceived characteristics of the learning environment in an e-module in relation to test performance among a group of e-learners. Using structural equation modelling, the relationship between these variables is further explored in terms of the proposed double mediation as outlined by Ning and…

Patterns of HIV Prevalence and HIV Risk Behaviors among Injection Drug Users Prior to and 24 Months following Implementation of Cross-Border HIV Prevention Interventions in Northern Vietnam and Southern China

ERIC Educational Resources Information Center

Hammett, Theodore M.; Kling, Ryan; Johnston, Patrick; Liu, Wei; Ngu, Doan; Friedmann, Patricia; Binh, Kieu Thanh; Dong, Ha Viet; Van, Ly Kieu; Donghua, Meng; Chen, Yi; Des Jarlais, Don C.

2006-01-01

In 2002, we implemented a 4-year HIV prevention intervention for injection drug users (IDUs) in Lang Son Province, Vietnam, and Ning Ming County, Guangxi Province, China, a cross-border region seriously affected by inter-twined epidemics of heroin injection and HIV infection. The interventions involve peer education on HIV risk reduction and…

Using a Social Networking Site for Experiential Learning: Appropriating, Lurking, Modeling and Community Building

ERIC Educational Resources Information Center

Arnold, Nike; Paulus, Trena

2010-01-01

With social networking sites playing an increasingly important role in today's society, educators are exploring how they can be used as a teaching and learning tool. This article reports the findings of a qualitative case study about the integration of "Ning" into a blended course. The study draws on the perspectives of the students, the…

Father and I

NASA Astrophysics Data System (ADS)

Yang, Chen Ning

2013-05-01

Father (K. C. Yang (楊克純), 1896-1973) was a high school teacher in Anqing (安慶) in 1922 when I was born in Hefei (合肥). Anqing was then also called Huaining (懷寧). Father gave me the name Chen Ning, of which Chen was the name of my generation in our family, and Ning was derived from Huaining. Before I was one year old Father won an Anhui (安徽) Provincial Fellowship for studying in the USA. We had a family picture (Figure 1) taken in the courtyard outside our bedroom a few days before he left home. Father had on the traditional robe and coat, standing stiff and erect. He had probably up to that point never worn a western suit. Two years later he sent a picture (Figure 2) to Mother from the University of Chicago, in which his attire and bearing had both entered the twentieth century. Father was a handsome man. The exuberance and optimism of his youth were clearly captured in this photograph...

[Chemical Laboratory of Celje Queen (at 580th Anniversary of Bohemian coronation of Queen Barbara of Celje)].

PubMed

Južnič, Stanislav

2017-06-01

Barbara Celjska je bila gotovo najbogatejša alkimistka vseh časov. Prispevek skuša pojasniti kakšni poskusi so potekali v njenem laboratoriju in nakazati, katere tehniške kemijske naprave je utegnila pri tem uporabljati. Ker je bila večina leteh iz zlahka lomljivih snovi, bi bilo njihovo iskanje brškone brez haska, saj ni veliko upanja za njihovo ohranitev. Barbara of Cilli was certainly the richest female alchemist of all times. The article tries to explain what kind of experiments she carried out in her laboratory and indicate which technical chemical plant she likely has used. The major part of her expensive tools was made from easily breakable materials, therefore any contemporary pursuit to locate them will be probably in vain, because there is not much hope for their preservation.

Naval War College Review. Volume 65, Number 1, Winter 2012

DTIC Science & Technology

2012-01-01

be jettisoned if necessary. 42. For the new Japanese design, see Yoji Koda , “A New Carrier Race? Strategy, Force Plan- ning, and JS Hyuga,” Naval War...Yoji Koda , “The Emerging Republic of Korea Navy: A Japanese Perspective,” in the same issue (pp. 13–34). 5950_Kim.indd 74 11/30/2011 11:02:06

Edmodo: A Great Tool for School Librarians

ERIC Educational Resources Information Center

Holzweiss, Kristina

2013-01-01

School librarians are in a profession where it is easy to be isolated. Often, school districts have only one certified librarian and school librarians must create ways to connect with one another and with other educators. Social media opportunities such as Facebook, LinkedIn, blogs, wikis, and nings are powerful ways of staying connected on a…

Genetic Modifiers of Ovarian Cancer

DTIC Science & Technology

2013-06-01

Barile M, Genuardi M, Arnold N, Meindl A, Sutter C, Wappenschmidt B, Domchek SM, Pfeiler G, Friedman E, Jensen UB, Robson M, Shah S, Lazaro C, Mai PL...Peissel B, Sellers TA, Ficarazzi F, Barile M, Ziogas A, Ashworth A, Gentry-Maharaj A, Jones M, Ramus SJ, Orr N, Menon U, Pearce CL, Brüning T, Pike

Social Networking Goes to School

ERIC Educational Resources Information Center

Davis, Michelle R.

2010-01-01

Just a few years ago, social networking meant little more to educators than the headache of determining whether to penalize students for inappropriate activities captured on Facebook or MySpace. Now, teachers and students have an array of social-networking sites and tools--from Ning to VoiceThread and Second Life--to draw on for such serious uses…

Training Community Modeling and Simulation Business Plan: 2009 Edition

DTIC Science & Technology

2010-04-01

strategic information assurance 33 33 Provide crisis action procedures training 34 34 Provide the IC SOF-specific training at the operational level... information and products • Collaborative analysis processes • Dissemination of information throughout a command and to subordinates by redundant means...centric M&S capabilities will improve training for information warfare, assist with training for homeland defense operations, crisis -management plan- ning

Optical Detection System Model.

DTIC Science & Technology

1982-04-01

duration of the signal does not have to be a specific value: it can be a very large value. The ODS code will work on the signal in 1024 point...WAF:NING: 1HIS WILL SUFER ElE ANY EXILTING £EOUJENCE ,IT/Nl: Y .RUN WVINP THIS IS THE WAVE FORM SECTION. DO YOU WANT HELP? (Y/N): N ENTER WAVELENGTH (IN

The Cold Gas-Dynamic Spray and Characterization of Microcrystalline and Nanocrystalline Copper Alloys

DTIC Science & Technology

2012-12-01

cold gas-dynamic spray process are well understood, the effects of feedstock powder microstructure and composition on the deposition process remain...The Relationship between Powder Zinc Content and Porosity .....74  5.  Compositional Variability as a Side Effect of the Cold Spray Deposition Process ...to expect in cold spray deposited copper coatings based on common spray parameters. Ning et

Potentials of Advanced Database Technology for Military Information Systems

DTIC Science & Technology

2001-04-01

UNCLASSIFIED Defense Technical Information Center Compilation Part Notice ADP010866 TITLE: Potentials of Advanced Database Technology for Military... Technology for Military Information Systems Sunil Choennia Ben Bruggemanb a National Aerospace Laboratory, NLR, P.O. Box 90502, 1006 BM Amsterdam...application of advanced information tech- nology, including database technology , as underpin- actions X and Y as dangerous or not? ning is

Test research of Surface Electromagnetic Prospecting (SEP) System in Yang-jia-zhang-zi of Liao Ning province

NASA Astrophysics Data System (ADS)

Di, Q.

2013-12-01

In recent years, deep prospecting method such as magnetotelluric and controlled source audio-frequency magnetotelluric develop rapidly, but the instruments almost monopolized by several big geophysical companies from the United States, Canada and Germany. From prospecting practice, foreign equipment adaptation on complicated geological conditions in China is unsatisfactory. As increasing of national strength, electromagnetic exploration system development independently is on the agenda. In the year of 2010, the institute of geology and geophysics, Chinese academy of sciences, took on one subject of the SinoProbe project, the research of surface Electromagnetic Prospecting (SEP) System, and has achieved some achievements. SEP is an independent research instrumentation system, which is available for MT, AMT and CSAMT soundings. After laboratory testing, in order to test SEP's performance in field, the yang-jia-zhang-zi molybdenum deposit area is selected for SEP experiment. All modules and components of SEP system have been tested, and the field ability of the whole system also has been tested. The experimental results show that SEP performance has reached the level of commercial instruments.

Tailoring Pore Size of Nitrogen-Doped Hollow Carbon Nanospheres for Confi ning Sulfur in Lithium–Sulfur Batteries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, Weidong; Wang, Chong M.; Zhang, Quiglin

Three types of nitrogen-doped hollow carbon spheres with different pore sized porous shells are prepared to investigate the performance of sulfur confinement. The reason that why no sulfur is observed in previous research is determined and it is successfully demonstrated that the sulfur/polysulfide will overflow the porous carbon during the lithiation process.

Dynamic defense workshop :

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crosby, Sean Michael; Doak, Justin E.; Haas, Jason Juedes.

2013-02-01

On September 5th and 6th, 2012, the Dynamic Defense Workshop: From Research to Practice brought together researchers from academia, industry, and Sandia with the goals of increasing collaboration between Sandia National Laboratories and external organizations, de ning and un- derstanding dynamic, or moving target, defense concepts and directions, and gaining a greater understanding of the state of the art for dynamic defense. Through the workshop, we broadened and re ned our de nition and understanding, identi ed new approaches to inherent challenges, and de ned principles of dynamic defense. Half of the workshop was devoted to presentations of current state-of-the-artmore » work. Presentation topics included areas such as the failure of current defenses, threats, techniques, goals of dynamic defense, theory, foundations of dynamic defense, future directions and open research questions related to dynamic defense. The remainder of the workshop was discussion, which was broken down into sessions on de ning challenges, applications to host or mobile environments, applications to enterprise network environments, exploring research and operational taxonomies, and determining how to apply scienti c rigor to and investigating the eld of dynamic defense.« less

Nonparametric Representations for Integrated Inference, Control, and Sensing

DTIC Science & Technology

2015-10-01

Learning (ICML), 2013. [20] Jeff Donahue, Yangqing Jia, Oriol Vinyals, Judy Hoffman, Ning Zhang, Eric Tzeng, and Trevor Darrell. DeCAF: A deep ...unlimited. Multi-layer feature learning “SuperVision” Convolutional Neural Network (CNN) ImageNet Classification with Deep Convolutional Neural Networks...to develop a new framework for autonomous operations that will extend the state of the art in distributed learning and modeling from data, and

Symmetric Missile Dynamic Instabilities - A Review

DTIC Science & Technology

1980-03-01

and a Magnus side moment must be added to the total aerodynamic moment. Since statically stable missiles are usually spun to reduce the effect of...Identify by block~ numbef) Symmetric Missile Roil Moment Resonance Spin Dynamic Stability Side Moment Damxping Moment Trim Moment Magnus Moment Moving...dlamping moments for nonspin- ning re-entry vehicles, nonlinear Magnus moments for spinning missiles, and internal resonances with moving payload

The 1985 ARI Survey of Army Recruits: Tabular Description of NPS Army Reserve Accessions. Volume 1

DTIC Science & Technology

1987-04-01

4 101. NBA baketball 1 2 3 4 102. College basketball 1 2 3 4 103. N4. hckey 1 2 3 4 104. Professional wrestling 1 2 3 4 105. Car roee 1 2 3 4 106...you participate in while you were in high school? (CIRCLE ALL THAT APPLY) Football........................1 Basketball ...................... 2...ALL THAT APPLY) Football ........................ 1 Basketball ..................... 2 Swi ning ........................ 3 Baseball

A Global Space Control Strategy

DTIC Science & Technology

2014-12-01

ASAT testing and development before significant pushback is enacted. Further, a growing body of literature suggests that space-based intelligence...management process must be the foundation of plan- ning space operations and responses. Second, we must realize that in order to conduct effective space...end state where commanders considering multiple courses of action have a sensor architecture and a tasking, collection, processing , exploitation, and

A DATA ACQUISITION SYSTEM FOR THE STUDY OF TRANSIENT RADIATION EFFECTS ON ELECTRONIC DEVICES. Paper 5 of FOURTH RADIATION EFFECTS SYMPOSIUM, SEPTEMBER 15-16, 1959, CINCINNATI, OHIO. GENERAL SESSION PAPERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cochrane, D.O.; Graham, F.E.; Sauer, H.S.

1961-10-31

ning both the transient and permanent effects that an environment of the type created by a nuclear detonation or a pulsed reactor exerts on electronic devices, is described. The design of suitable test heads for containing the electronic devices is discussed. The design of a blockhouse for use near Ground Sero when evaluating components in a weapons environment is also discussed. (C.J.G.)

Precision Engineering - SRO 154.

DTIC Science & Technology

1986-01-01

Operation The principle of interferometric displacement measurement devices is that if two identical, coherent, monochromatic light beams are directed...laser interferometric feedback to enhance the accuracy and precision of a lead screw stage. The precision translation stage was designed to produce...and the deepest was 22 micrometers (875 microinches). Figures 5, 6 and 7 are Nomarsky photomicrographs showing the begin- ning, middle and end of a

Controlling HIV Epidemics among Injection Drug Users: Eight Years of Cross-Border HIV Prevention Interventions in Vietnam and China

PubMed Central

Hammett, Theodore M.; Des Jarlais, Don C.; Kling, Ryan; Kieu, Binh Thanh; McNicholl, Janet M.; Wasinrapee, Punneeporn; McDougal, J. Stephen; Liu, Wei; Chen, Yi; Meng, Donghua; Huu Nguyen, Tho; Ngoc Hoang, Quyen; Van Hoang, Tren

2012-01-01

Introduction HIV in Vietnam and Southern China is driven by injection drug use. We have implemented HIV prevention interventions for IDUs since 2002–2003 in Lang Son and Ha Giang Provinces, Vietnam and Ning Ming County (Guangxi), China. Methods Interventions provide peer education and needle/syringe distribution. Evaluation employed serial cross-sectional surveys of IDUs 26 waves from 2002 to 2011, including interviews and HIV testing. Outcomes were HIV risk behaviors, HIV prevalence and incidence. HIV incidence estimation used two methods: 1) among new injectors from prevalence data; and 2) a capture enzyme immunoassay (BED testing) on all HIV+ samples. Results We found significant declines in drug-related risk behaviors and sharp reductions in HIV prevalence among IDUs (Lang Son from 46% to 23% [p<0.001], Ning Ming: from 17% to 11% [p = 0.003], and Ha Giang: from 51% to 18% [p<0.001]), reductions not experienced in other provinces without such interventions. There were significant declines in HIV incidence to low levels among new injectors through 36–48 months, then some rebound, particularly in Ning Ming, but BED-based estimates revealed significant reductions in incidence through 96 months. Discussion This is one of the longest studies of HIV prevention among IDUs in Asia. The rebound in incidence among new injectors may reflect sexual transmission. BED-based estimates may overstate incidence (because of false-recent results in patients with long-term infection or on ARV treatment) but adjustment for false-recent results and survey responses on duration of infection generally confirm BED-based incidence trends. Combined trends from the two estimation methods show sharp declines in incidence to low levels. The significant downward trends in all primary outcome measures indicate that the Cross-Border interventions played an important role in bringing HIV epidemics among IDUs under control. The Cross-Border project offers a model of HIV prevention for IDUs

Criticality features in ULF magnetic fields prior to the 2011 Tohoku earthquake

PubMed Central

HAYAKAWA, Masashi; SCHEKOTOV, Alexander; POTIRAKIS, Stelios; EFTAXIAS, Kostas

2015-01-01

The criticality of ULF (Ultra-low-frequency) magnetic variations is investigated for the 2011 March 11 Tohoku earthquake (EQ) by natural time analysis. For this attempt, some ULF parameters were considered: (1) Fh (horizontal magnetic field), (2) Fz (vertical magnetic field), and (3) Dh (inverse of horizontal magnetic field). The first two parameters refer to the ULF radiation, while the last parameter refers to another ULF effect of ionospheric signature. Nighttime (L.T. = 3 am ± 2 hours) data at Kakioka (KAK) were used, and the power of each quantity at a particular frequency band of 0.03–0.05 Hz was averaged for nighttime hours. The analysis results indicate that Fh fulfilled all criticality conditions on March 3–5, 2011, and that the additional parameter, Dh reached also a criticality on March 6 or 7. In conclusion, criticality has reached in the pre-EQ fracture region a few days to one week before the main shock of the Tohoku EQ. PMID:25743063

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

PubMed

Salojärvi, Jarkko; Smolander, Olli-Pekka; Nieminen, Kaisa; Rajaraman, Sitaram; Safronov, Omid; Safdari, Pezhman; Lamminmäki, Airi; Immanen, Juha; Lan, Tianying; Tanskanen, Jaakko; Rastas, Pasi; Amiryousefi, Ali; Jayaprakash, Balamuralikrishna; Kammonen, Juhana I; Hagqvist, Risto; Eswaran, Gugan; Ahonen, Viivi Helena; Serra, Juan Alonso; Asiegbu, Fred O; de Dios Barajas-Lopez, Juan; Blande, Daniel; Blokhina, Olga; Blomster, Tiina; Broholm, Suvi; Brosché, Mikael; Cui, Fuqiang; Dardick, Chris; Ehonen, Sanna E; Elomaa, Paula; Escamez, Sacha; Fagerstedt, Kurt V; Fujii, Hiroaki; Gauthier, Adrien; Gollan, Peter J; Halimaa, Pauliina; Heino, Pekka I; Himanen, Kristiina; Hollender, Courtney; Kangasjärvi, Saijaliisa; Kauppinen, Leila; Kelleher, Colin T; Kontunen-Soppela, Sari; Koskinen, J Patrik; Kovalchuk, Andriy; Kärenlampi, Sirpa O; Kärkönen, Anna K; Lim, Kean-Jin; Leppälä, Johanna; Macpherson, Lee; Mikola, Juha; Mouhu, Katriina; Mähönen, Ari Pekka; Niinemets, Ülo; Oksanen, Elina; Overmyer, Kirk; Palva, E Tapio; Pazouki, Leila; Pennanen, Ville; Puhakainen, Tuula; Poczai, Péter; Possen, Boy J H M; Punkkinen, Matleena; Rahikainen, Moona M; Rousi, Matti; Ruonala, Raili; van der Schoot, Christiaan; Shapiguzov, Alexey; Sierla, Maija; Sipilä, Timo P; Sutela, Suvi; Teeri, Teemu H; Tervahauta, Arja I; Vaattovaara, Aleksia; Vahala, Jorma; Vetchinnikova, Lidia; Welling, Annikki; Wrzaczek, Michael; Xu, Enjun; Paulin, Lars G; Schulman, Alan H; Lascoux, Martin; Albert, Victor A; Auvinen, Petri; Helariutta, Ykä; Kangasjärvi, Jaakko

2017-06-01

Silver birch (Betula pendula) is a pioneer boreal tree that can be induced to flower within 1 year. Its rapid life cycle, small (440-Mb) genome, and advanced germplasm resources make birch an attractive model for forest biotechnology. We assembled and chromosomally anchored the nuclear genome of an inbred B. pendula individual. Gene duplicates from the paleohexaploid event were enriched for transcriptional regulation, whereas tandem duplicates were overrepresented by environmental responses. Population resequencing of 80 individuals showed effective population size crashes at major points of climatic upheaval. Selective sweeps were enriched among polyploid duplicates encoding key developmental and physiological triggering functions, suggesting that local adaptation has tuned the timing of and cross-talk between fundamental plant processes. Variation around the tightly-linked light response genes PHYC and FRS10 correlated with latitude and longitude and temperature, and with precipitation for PHYC. Similar associations characterized the growth-promoting cytokinin response regulator ARR1, and the wood development genes KAK and MED5A.

Several years of experience with automatic DI-flux systems: theory, validation and results

NASA Astrophysics Data System (ADS)

Poncelet, Antoine; Gonsette, Alexandre; Rasson, Jean

2017-09-01

The previous release of our automatic DI-flux instrument, called AutoDIF mk2.2, has now been running continuously since June 2012 in the absolute house of Dourbes magnetic observatory performing measurement every 30 min. A second one has been working in the tunnel of Conrad observatory (Austria) since December 2013. After this proof of concept, we improved the AutoDIF to version mk2.3, which was presented at the 16th IAGA workshop in Hyderabad. As of publication, we have successfully deployed six AutoDIFs in various environments: two in Dourbes (DOU), one in Manhay (MAB), one in Conrad (CON), one in Daejeon (South Korea) and one is used for tests. The latter was installed for 10 months in Chambon-la-Forêt (CLF) and, since 2016, has been in Kakioka (KAK). In this paper, we will compare the automatic to the human-made measurements and discuss the advantages and disadvantages of automatic measurements.

Multiple ground-based and satellite observations of global Pi 2 magnetic pulsations

NASA Technical Reports Server (NTRS)

Yumoto, K.; Takahashi, K.; Sakurai, T.; Sutcliffe, P. R.; Kokubun, S.

1990-01-01

Four Pi 2 events are examined using data obtained concurrently at the Syowa-Iceland conjugate stations, the EISCAT-Magnetometer Cross, low-latitude stations HER on the nightside and KAK on the dayside, and at AMPTE/CCE in the outer magnetosphere during the period from 2300 UT on May 22 to 0300 UT on May 23, 1985. Several characteristics of Pi 2 are established on the basis of high time resolution magnetic field data. First of all, horizontal components, H and D, of the Pi 2 oscillate nearly antiphase and in-phase, respectively, between the high- and low-altitude stations in the midnight southern hemisphere. Both H and D components of the Pi 2 have nearly in-phase relationships between the nightside and the dayside stations at low altitude. The Pi 2 amplitude is larger at the high-latitude station and decreases toward low latitudes. The dominant periods of the Pi 2 are nearly identical at all stations.

Molecular evolution of the HD-ZIP I gene family in legume genomes.

PubMed

Li, Zhen; Jiang, Haiyang; Zhou, Lingyan; Deng, Lin; Lin, Yongxiang; Peng, Xiaojian; Yan, Hanwei; Cheng, Beijiu

2014-01-01

Homeodomain leucine zipper I (HD-ZIP I) genes were used to increase the plasticity of plants by mediating external signals and regulating growth in response to environmental conditions. The way genomic histories drove the evolution of the HD-ZIP I family in legume species was described; HD-ZIP I genes were searched in Lotus japonicus, Medicago truncatula, Cajanus cajan and Phaseolus vulgaris, and then divided into five clades through phylogenetic analysis. Microsynteny analysis was made based on genomic segments containing the HD-ZIP I genes. Some pairs turned out to conform with syntenic genome regions, while others corresponded to those that were inverted, expanded, or contracted after the divergence of legumes. Besides, we dated their duplications by Ks analysis and demonstrated that all the blocks were formed after the monocot-dicot split; we observed Ka/Ks ratios representing strong purifying selections in the four legume species which might have been followed by gene loss and rearrangement. © 2014 Elsevier B.V. All rights reserved.

Study of Navy Recruiting Simulation Tool

DTIC Science & Technology

2010-03-01

thinking” (p. 205). E. ROLE-PLAY Role-play “is a technology for intensifying and accelerating learning” (Blatner, 2009, p. 18). Adapted from psychodrama ...American Society of Group Psychotherapy and Psychodrama . (n.d.). Psychodrama . Retrieved March 5, 2010, from National Coalition of Creative Arts Therapies...nl.edu: http://www.nl.edu/academics/cas/ace/facultypapers/StephenBrookfield_AdultLear ning.cfm 106 Casey, A. M. (2001). Psychodrama : Applied role

Optimal Mass Transport for Statistical Estimation, Image Analysis, Information Geometry, and Control

DTIC Science & Technology

2017-01-10

Metric Uncertainty for Spectral Estimation based on Nevanlinna-Pick Interpolation, (with J. Karlsson) Intern. Symp. on the Math . Theory of Networks and...Systems, Melbourne 2012. 22. Geometric tools for the estimation of structured covariances, (with L. Ning, X. Jiang) Intern. Symposium on the Math . Theory...estimation and the reversibility of stochastic processes, (with Y. Chen, J. Karlsson) Proc. Int. Symp. on Math . Theory of Networks and Syst., July

World Epidemiology Review, Number 91

DTIC Science & Technology

1978-02-09

50 LIBYA 53 MALAYSIA 54 MEXICO 54 MOZAMBIQUE 55 NEW ZEALAND 57 NIGERIA. 58 a - [III - INT - 134] CONTENTS (Continued) Page...Editorial: "Mass Immunization"] [Text] Afghanistan was declared a small- pox free country at the begin- ning of this year after the assessment and...Afghanistan and inter- national organisations. For eradication of small- pox mass immunisation was a major weapon and the program was implemented in most

The Super-Secret, Never-before-Revealed Guide to Web 2.0 in the Classroom

ERIC Educational Resources Information Center

Schaffhauser, Dian

2010-01-01

In spite of the fact that web 2.0-enabled tools and services are supposed to be easy to set up and simple to use, some faculty in higher education never got that memo. They don't know a tweet from a tag, identify Ning as a four-letter word for "river in China", and would probably guess that Squidoo is a friend of SpongeBob and Patrick. This guide…

Enabling Unity of Effort in Homeland Response Operations

DTIC Science & Technology

2012-04-01

deploying over 50,000 National Guards- men in response to Hurricane Katrina, the largest military response to a natural disaster in U.S. history...frequent consultant for private and government organizations on plan- ning, training, and disaster response. viii KERRY MCINTYRE currently serves as...able to bring them to bear at the right time and place, and in the right combina- tion. Disasters in our homeland have enormous con- sequences

An Introduction to Moire Methods with Applications in Composite Materials

DTIC Science & Technology

1992-08-01

including hardware and software requirements are discussed by Ranson, 19 Sciammarella , 2 0 Chanudry,2 1 Ning,2 2 and Lee. 23 Other computation techniques...variations in material fabrication processes. 9 Dynamic applications of moire were done by Armenakas and Sciammarella , 70 Epstein, Deason, and...Abdallah,71, 72 as well as Hsu, Liu, Chiang, and Anastasi. 73 Armenakas and Sciammarella examined the response of glass/epoxy specimens to high strain rates

Trusted Autonomy: Concept Development in Technology Foresight

DTIC Science & Technology

2015-09-01

executing the response . UNCLASSIFIED 19 UNCLASSIFIED DST-Group-TR-3153 UNCLASSIFIED 20 Previous models explored autonomy through the lenses of...w /users to leam to tackle complex problems Robots are able to intanalise and use world models Controllers have multiple modules based on leru.ning...technology across society. It aims to describe usage or uptake, and evolving trends, in technological development over time. Through doing so, it seeks to

Understanding and Controlling the Electronic Properties of Graphene Using Scanning Probe Microscopy

DTIC Science & Technology

2014-07-21

Dirac point in gated bilayer graphene, Applied Physics Letters, (12 2009): 243502. doi : 10.1063/1.3275755 Brian J. LeRoy, Adam T. Roberts, Rolf...of soliton motion and stacking in trilayer graphene, Nature Materials , (04 2014): 0. doi : 10.1038/nmat3965 Matthew Yankowitz, Joel I-Jan Wang...of bilayer graphene via quasiparticle scattering, APL Materials , (09 2014): 92503. doi : Matthew Yankowitz, Fenglin Wang, Chun Ning Lau, Brian J

Plan Debugging Using Approximate Domain Theories.

DTIC Science & Technology

1995-03-01

compelling suggestion that generative plan- ning systems solving large problems will need to exploit the control information implicit in uncertain...control information implicit in uncertain information may well lead the planner to expand one portion of a plan at one point, and a separate portion of...solutions that have been proposed are to abandon declarativism (as suggested in the work on situated automata theory and its variants [1, 16, 56, 72

Verifying the Rechargeability of Li-CO2 Batteries on Working Cathodes of Ni Nanoparticles Highly Dispersed on N-Doped Graphene.

PubMed

Zhang, Zhang; Wang, Xin-Gai; Zhang, Xu; Xie, Zhaojun; Chen, Ya-Nan; Ma, Lipo; Peng, Zhangquan; Zhou, Zhen

2018-02-01

Li-CO 2 batteries could skillfully combine the reduction of "greenhouse effect" with energy storage systems. However, Li-CO 2 batteries still suffer from unsatisfactory electrochemical performances and their rechargeability is challenged. Here, it is reported that a composite of Ni nanoparticles highly dispersed on N-doped graphene (Ni-NG) with 3D porous structure, exhibits a superior discharge capacity of 17 625 mA h g -1 , as the air cathode for Li-CO 2 batteries. The batteries with these highly efficient cathodes could sustain 100 cycles at a cutoff capacity of 1000 mA h g -1 with low overpotentials at the current density of 100 mA g -1 . Particularly, the Ni-NG cathodes allow to observe the appearance/disappearance of agglomerated Li 2 CO 3 particles and carbon thin films directly upon discharge/charge processes. In addition, the recycle of CO 2 is detected through in situ differential electrochemical mass spectrometry. This is a critical step to verify the electrochemical rechargeability of Li-CO 2 batteries. Also, first-principles computations further prove that Ni nanoparticles are active sites for the reaction of Li and CO 2 , which could guide to design more advantageous catalysts for rechargeable Li-CO 2 batteries.

Antioxidant effects of herbal therapies used by patients with inflammatory bowel disease: an in vitro study.

PubMed

Langmead, L; Dawson, C; Hawkins, C; Banna, N; Loo, S; Rampton, D S

2002-02-01

Herbal remedies used by patients for treatment of inflammatory bowel disease include slippery elm, fenugreek, devil's claw, Mexican yam, tormentil and wei tong ning, a traditional Chinese medicine. Reactive oxygen metabolites produced by inflamed colonic mucosa may be pathogenic. Aminosalicylates (5-ASA) are antioxidant and other such agents could be therapeutic. To assess the antioxidant effects of herbal remedies in cell-free oxidant-generating systems and inflamed human colorectal biopsies. Luminol-enhanced chemiluminescence in a xanthine/xanthine oxidase cell-free system was used to detect superoxide scavenging by herbs and 5-ASA, and fluorimetry to define peroxyl radical scavenging using a phycoerythrin degradation assay. Chemiluminescence was used to detect herbal effects on generation of oxygen radicals by mucosal biopsies from patients with active ulcerative colitis. Like 5-ASA, all herbs, except fenugreek, scavenged superoxide dose-dependently. All materials tested scavenged peroxyl dose-dependently. Oxygen radical release from biopsies was reduced after incubation in all herbs except Mexican yam, and by 5-ASA. All six herbal remedies have antioxidant effects. Fenugreek is not a superoxide scavenger, while Mexican yam did not inhibit radical generation by inflamed biopsies. Slippery elm, fenugreek, devil's claw, tormentil and wei tong ning merit formal evaluation as novel therapies in inflammatory bowel disease.

Early Development of Four Cyprinids Native to the Yangtze River, China

USGS Publications Warehouse

Chapman, Duane C.

2006-01-01

Chapter 1 -- Notes on the Translation and Use of "A Study of the Early Development of Grass Carp, Black Carp, Silver Carp, and Bighead Carp in the Yangtze River, China" By Duane C. Chapman and Ning Wang Chapter 2 -- A Study of the Early Development of Grass Carp, Black Carp, Silver Carp, and Bighead Carp in the Yangtze River, China By Bolu Yi, Zhishen Liang, Zhitang Yu, Randuan Lin, and Mingjue HeTranslated by Duane C. Chapman and Ning Wang The document A Study of the Early Development of Grass Carp, Black Carp, Silver Carp, and Bighead Carp in the Yangtze River, China (Chapter 2 of this volume) was translated from the Chinese with the approval and assistance of the living authors of that study. It contains the most detailed description available, and approximately 200 drawings, of the early development of the subject fishes. Chapter 1 provides important instructions on the use of the translation, including a description of the Chinese morphometric conventions, which differ from those used by North American scientists. Chapter 1 also provides the historical context in which Chapter 2 was developed, and information on how the larvae of the subject fishes, which have invaded the Mississippi River basin, may be distinguished from other fishes present in the basin.

Hydrological Work in Communist China

DTIC Science & Technology

1961-03-01

and Yen -ho in Kueichou Province, at Hsin - ning and Ta-yung in Hunan Province and at Ts’un-chi, Hsi Hsien and Ho- li-chi in...hydro- logical information and a control over hydrological fluctuations. Early in 1955 and 1956, in gathering data for irrigation planning, the Hsin ...organi- zation established to service the translation and research needs of the various government departments. JPRS: W27 CSO: 13iO-S/a

Japanese Aggression in Asia (1895-1930). Japan’s Dream of ’Hakko Ichuo’ (Eight Corners of the World under Japanese Rule).

DTIC Science & Technology

1980-12-01

the British Navy was also of significant value, for then Britannia still ruled the waves. The huge indemnity received from the Chinese played an...11 among the sons, the eldest took all and the second and third sons became either factory or mine workers or apprentices of a merchant. When...warehouses, spin- ning, paper and sugar mills, all based on the large profits which came from banking, mining and foreign trade. Mitsubishi had its

Sensitivity of Typhoon Track Predictions in a Regional Prediction System to Initial and Lateral Boundary Conditions

DTIC Science & Technology

2009-09-01

123, 93–109. ——, T.-H. Yen, Y.-H. Kuo, and W. Wang, 2002: Rainfall simu- lation associated with Typhoon Herb (1996) near Taiwan . Part I: The topographic...Bureau, Taipei, Taiwan MELINDA S. PENG Marine Meteorology Division, Naval Research Laboratory, Monterey, California DER-SONG CHEN, KANG-NING HUANG, AND...TIEN-CHIANG YEH Central Weather Bureau, Taipei, Taiwan (Manuscript received 13 May 2008, in final form 25 December 2008) ABSTRACT Tropical cyclone

Regionalizing East Mediterranean Gas: Energy Security, Stability, and the U.S. Role

DTIC Science & Technology

2014-12-01

Regional strategic appraisals; • The nature of land warfare; • Matters affecting the Army’s future; • The concepts, philosophy, and theory of... tendered out four more offshore blocks, which have been signed up for by consortia led by European majors ENI and Total, and is plan- ning for...followed issuance of Cyprus’s second offshore tender round in February 2012 that Turkey would “take all necessary measures to pro- tect its rights

Spatial Light Modulators and Applications. 1988 Technical Digest Series, Volume 8

DTIC Science & Technology

1988-06-01

presence of an applied field but without run- ning gratings; then the fringes are allowed to move, with a velocity that optimizes self- in which F0...Laboratories. The optimization of an MQW modulator for both phase and amplitude modulation is reported, along with preliminary structural N.J design for a...Canyon Road Malibu, California 90265 ABSTRACT The optimization of an MOW modulator for both phase and amplitude modulation is reported,along with

Energy and Process Optimization and Benchmarking of Army Industrial Processes

DTIC Science & Technology

2006-09-01

casting is a metal part formed by pouring molten iron, steel, aluminum, zinc , titanium, magnesium, copper, brass, bronze or cobalt, in nearly all...blanketing techniques. The loss of high-priced alloys is also mini- mized, while slag or dross rates are cut in half to help decrease disposal costs...fabricated of iron and steel; hot dip coating such items with aluminum, lead, or zinc ; retin- ning cans and utensils; (3) engraving, chasing and

Lead Me, Follow Me, or Get Out of My Way: Rethinking and Refining the Civil-Military Relationship

DTIC Science & Technology

2012-09-01

nearly a quarter-century ago. Dr. Shulman notes numerous social, legal , political, and technologi- cal changes in recent years that should occasion a...law, Dr. Shulman elucidates some of the important schisms between members of the Armed Forces and civil soci- ety. He explains the legal maneuvers...III asks where we go from here. These important books attribute a thin- ning of civilian control over the military to specific legal and political

Rapid, Multiplexed Microfluidic Phage Display

DTIC Science & Technology

2012-01-01

affinity phage- displayed peptides for multiple targets in just a single round and without the need for bacterial infection. The chip is shown to be able...by bacterial titer and amplification, and at least two additional rounds of selection. After the final round of biopan- ning, eluted phage are grown on...agar plates, and individual plaques are selected for DNA characterization to determine the amino acid sequence of the phage-displayed peptides. While

State of Washington, Aquatic Plant Management Program: Design Memorandum.

DTIC Science & Technology

1979-10-01

3 days after appit- cation, fed ior 90 da- fo11-nIng haorst1ing equipment catIon. Swimming shouldt oe aplication . oring narventing opa- restricted...labor, maintenance, profit, capitalization of equipment costs, and mobilization -demobilization. 2/Local administrative costs are $2,000 for 100 acres...rental of two boats at a cost of $64/day each, mobilization - demobilization of equipment, and a capability of treating 100 acres/day. 2/The treatment boat

Naval War College Review. Volume 64, Number 1, Winter 2011

DTIC Science & Technology

2011-01-01

2010, a Chinese delegation headed by Major General Li Ning, the defense counselor for the Chinese mission to the European Union , visited the...headquarters of European Union Naval Force (EU NAVFOR) Somalia in Djibouti.52 Djibouti would be an excellent choice as a place for the PLAN, and it should...France’s Base Aérienne 188 is home to the headquarters of EU NAVFOR Somalia/Operation ATALANTA, the European Union naval force tasked with

Report of the Defense Science Board Task Force on Military System Applications of Superconductors

DTIC Science & Technology

1988-10-01

sensitivity increases over current scan- ning IR sensors, # W’W Ana/&_ and U/tin- Fast Di sia$zd W Pfor radar and optical sen- sors; W’Ujh Power Motors...The electromagnetic (EM) mass accelerator concept is some 25 years old and has been ex- plored intermittently . Recently, SDIO has supported EM rail...Increased Radar Range HIS - Medium Risk (Phased-Array Antenna) WIDEBAND ANALOG AND ULTRA- FAST LTS - Low Risk (Analog) DIGITAL SIGNAL PROCESSING Medium Risk

Effect of Fatigue-Stressing Short of Failure on Some Typical Aircraft Metals

DTIC Science & Technology

1945-10-01

of the fractures .. .,. . ....:,:..;.-.,: ,: TTqm c,on~~~’~rktion of such resultb it seemed worth while ~“~arn+ning the effects of repeated strese:on...fatigue-stz’~$sed short 015:: fracture . ; Tli~ impact behavior of normalized SAE X 4130 staal was studied[’YoTlotiing” fatigue-stressing .under”a...conduc&ed in the conventional manner on a group of notched specimens t-o determine the S-N curve and the fatigue limit (tests to fracture ). Four

The Impact of Prostate Cancer Treatment-Related Symptoms on Low-Income Latino Couples

DTIC Science & Technology

2008-03-01

hacerle una pregunta sobre su salud. A1. En general, ¿Usted diría que su salud es excelente, muy buena, buena, regular, o mala? 100...hizo usted su trabajo u otras actividades con el mismo cuidado que de costumbre debido a algún problema emocional, como sentirse deprimido o...problema, si es que ha tenido problemas con esto, de gotear orina o mojarse los pantalones durante las últimas 4 semanas? 100 Ningún problema

Planificacion y registros

Treesearch

R. Kasten Dumroese; Douglass F. Jacobs; Kim M. Wilkinson

2012-01-01

El cultivo de plantines en contenedor no tiene principio ni final; es un ciclo continuo de eventos que se repiten. Todos los aspectos de la producción son importantes y ningún detalle es menos relevante que los demás. Iniciar la producción de los plantines de forma adecuada asegura la obtención de plantas saludables y de buena calidad para la plantación a campo. En...

Preparation of Hemoglobin-Containing Microcapsules.

DTIC Science & Technology

1981-06-01

were suspended in saline for storage in a refrigerator. Although in these microencapsulation experiments, the Hb was not denatured, the microcapsules ... microencapsulated Hb, l.O-ml sample of the microcapsule suspension was diluted with 10 ml 0.9% NaCI. The absorption spectrum was taken immediately after dilution...AD A135 634 PREPARATION OF HEMOGLOBIN CONTA NING MICROCAPSULES (U) I/ ,R 224 AM OS NTERNATIDNAL MENOPARKO CA REYES AUNN8 SRI-2254-1 DAMD17-80-C-01?7

The Evolution of US Army Tactical Doctrine, 1946-76 (Leavenworth Papers, Number 1)

DTIC Science & Technology

1979-08-01

different from those usedin the past. As for the offense, rhe manual noted that chemical, biological and radiological agents could be used “to...The official Army study was entitled­ “Atomic Field Army-l 1956 (,ATFA-I).” The formal field tests began in 1954with the 1st Armored Division at...Fort Hood, Texas, and the 47th Infantry Division at Fort Ben­ ning, Georgia. The extensive tests were designed to determine what changes in

PR01 - The Effects of Total Sleep Deprivation and Recovery Sleep on Cognitive Performance and Brain Function

DTIC Science & Technology

2006-08-01

characterizing brain areas using fMRI activation during parametric variations of attentional load.Neuron, 2001, 32: 737–745. Doran, S . M., Van Dongen...four nouns. Three images collected at the begin- ning of each run were omitted form the analysis. The entire task lasted 300 s . Data Analysis fMRI data...The views, opinions and/or findings contained in this report are those of the author( s ) and should not be construed as an official Department of the

Translations on Narcotics and Dangerous Drugs, Number 318

DTIC Science & Technology

1977-09-08

cent of those ar- rested for drug offences had no religious back- ground. He therefore called on ’ the Malaysian Inter-Re- , ligions...guidance teachers throughout Per- ak on matters concer- ning drug abuse; ©To screen slides ät various lecture sessions and cinema ; .•To seek cooper...illicit drugs, it would mean that 15 out of every 1,000 Malaysians have drug- tainted fingers (based on a population figure of 12 mil- lion).. An idea

Robotics: An Introduction to Today’s Robot and Future Trends.

DTIC Science & Technology

1983-07-01

trial applications." What qualities define a machine as a robot? The Robot Institute of Amer- ica defines a robot as follows: "A robot is a reprogrammable ...manufactures a robot with a spin- ning wrist. Second, and this is the key feature, robots are reprogrammable and hence versatile. An automatic lathe is not...robot spot-welds an automobile frame. In Figure 8, a single robot transferring a transmission case is shown, but a total of eight robots are

Cascading Effects of Fuel Network Interdiction

DTIC Science & Technology

2015-03-26

Agriculture, hunting, forestry and fishing C10T14 M ning and quarry ng C15T16 Food products, beverages and tobacco C17T19 Textiles, textile products...9369063 C15T16 Food products, beverages and tobacco 33278 70853 222.4224148 112593.0889 4705.413385 49.58915033 491.768614 81.36711771 1554.487224...THESIS Presented to the Faculty Department of Operational Sciences Graduate School of Engineering and Management Air Force Institute of Technology

Army Logistician. Volume 41, Issue 4, July-August 2009

DTIC Science & Technology

2009-08-01

misuse the terms associated with targeting to fit sustainment, we run the risk of misusing the original term when it is used in the context of lethal...but as the term became a “catch- all” for Army operations, the original concept lost its intended purpose. We no longer use the term because of its...the detriment of its original purpose in Army plan- ning and operations. Rather than change terminology, the sustainment community needs to focus on

JPRS Report China

DTIC Science & Technology

1988-11-29

Tsun Ning Tzu , Ken Pen Po, and Sung Ching, invited an army advisory group headed by Fu Tian Chih Liang (Pai Hung-liang) and Pen Hsiang Chien (Fan...a war to preventing the outbreak of a war . 1. Strategy is the manifestation of the course and result of the evolution of the times. The features...issue of peace and war and, two, the issue of the economy." This is, from the overall standpoint, a scientific summation of the basic charac

Liquid Crystal Airborne Display

DTIC Science & Technology

1977-08-01

Cum.nings, J. P., et al., Properties and Limitations oe Liquid Crystals for Aircraft Displays, Honeywell Corporate Researc ."I Center, Final Report HR-72...basic module could be used to build displays for both the commercial and military! 157- marhecs, and so would establi sh a broad and sizable market ... market for the display becomes a reality; therein lies, f TABLE 16 THE COURSE OF FUTURE DISPLAY DEVELOPMENT Today 1976-77 1980 1985 Display Size 2" 1 3.2

Design and Development of a Super Permeability Nanostructured Permalloy Composite

DTIC Science & Technology

2007-11-20

Oh, J.Y. Lee, W.X. Chen, “Effect of the pH Value on the Magnetic Properties of Electroplated NiFe Layers”, Materials Science Forum 437-438 (2003) 57...60. 3 H.L. Seet, X.P. Li, N.Ning, W.C. Ng, J.B. Yi, “Effect of Magnetic Coating Layer Thickness on the Magnetic Properties of Electrodeposited NiFe ...15 5. Comparison between the magnetic properties of the stripe and wire structured composites 29 6. Design, development and

A Framework for Managing the Assured Information Sharing Lifecycle

DTIC Science & Technology

2013-11-06

Mohamed Nabeel , Elisa Bertino: Privacy preserving delegated access control in the storage as a service model. IRI 2012: 645-652 • Mohamed Nabeel , Ning...2012: 67-68 • M. Nabeel , J. Zage, S. Kerr, E. Bertino, N. Athula Kulatunga, U. Sudheera Navaratne, M. Duren: Crypto- graphic Key Management for Smart...Military Communications Conf., Nov.2011. • Pramod Jagtap, Anupam Joshi, Tim Finin and Laura Zavala, Preserving Privacy in Context-Aware Sys - tems, Proc. 5th IEEE Int. Conf. on Semantic Computing, Oct. 2011.

Genetic Modifiers of Ovarian Cancer

DTIC Science & Technology

2014-08-01

Barile M, Pensotti V, Pasini B, Dolcetti R, Giannini G, Laura Putignano A, Varesco L, Radice P, Mai PL, Greene MH, Andrulis IL, Glendon G, Ozcelik H... Barile 17 M, Bernard L, Viel A, Giannini G, Varesco L, Radice P, Greene MH, Mai PL, Easton DF, Chenevix-Trench G; for kConFab investigators, Offit K...Peissel B, Sellers TA, Ficarazzi F, Barile M, Ziogas A, Ashworth A, Gentry-Maharaj A, Jones M, Ramus SJ, Orr N, Menon U, Pearce CL, Brüning T, Pike MC

High Frequency Magneto Dielectric Effects In Self Assembled Ferrite Ferroelectric Core Shell Nanoparticles

DTIC Science & Technology

2014-09-10

2008). 2 Y. Yang, S. Priya, J. Li , and D. Viehland, J. Am. Ceram. Soc. 92, 1552 (2009). 3 J. Ma, J. Hu, Z. Li , and C. W. Nan, Adv. Mater. 23, 1062...2013) 9 Yongke Yan, Yuan Zhou, and Shashank Priya, Appl. Phys. Lett. 104, 032911 (2014) 10 Gaojian Wu, Tianxiang Nan, Ru Zhang, Ning Zhang, Shandong Li ...Kim, L. T. Schelhas, S. Keller, J. L. Hockel, S. H. Tolbert, and G. P. Carman, Nano Lett. 13, 884 (2013). 13 S. Zhang, Y. G. Zhao, P. S. Li , J. J

Surface Warfare September/October 2000, Volume 25, No. 5 Maritime Dominance

DTIC Science & Technology

2000-10-01

Yet the price of supremacy remains high. High in the cost of building and maintaining the most sophisticated Fleet the world has ever seen . High in...American people expect a win- ning franchise . To deliver on this demand and field a winning ball club, we require a state-of-the-art ball field...yet with where we are. scribed to that. That’s what you’ve used to be. We still have a ways to go. We still seen in Kosovo or Iraq, where we’ve have

Plasmon Lasers: Coherent Light Source at Molecular Scales

DTIC Science & Technology

2012-01-01

Y . S . Oei, R . Nötzel, C.-Z. Ning, and M.K. Smit, Opt. Express 17, 11107–11112 (2009). [8] M.A. Noginov...Kang, C. Seassal, S .-K. Kim, P. Regreny, Y .-H. Lee, C.M. Lieber, and H.-G. Park Nano, Lett. 10, 3679–3683 (2010). [11] R.M.Ma, R . F. Oulton, V. J... R . T. Hill, J. J. Mock, Y . Urzhumov, D. S . Sebba, S . J. Olden- burg, S .- Y . Chen, A. Lazarides, A. Chilkoti, and D. R . Smith, Nano Lett. 10,

On the Asymptotic Behavior of a Log Gas in the Bulk Scaling Limit in the Presence of a Varying External Potential I

NASA Astrophysics Data System (ADS)

Bothner, Thomas; Deift, Percy; Its, Alexander; Krasovsky, Igor

2015-08-01

We study the determinant , of the integrable Fredholm operator K s acting on the interval (-1, 1) with kernel . This determinant arises in the analysis of a log-gas of interacting particles in the bulk-scaling limit, at inverse temperature , in the presence of an external potential supported on an interval of length . We evaluate, in particular, the double scaling limit of as and , in the region , for any fixed . This problem was first considered by Dyson (Chen Ning Yang: A Great Physicist of the Twentieth Century. International Press, Cambridge, pp. 131-146, 1995).

Lin Receives 2010 Natural Hazards Focus Group Award for Graduate Research

NASA Astrophysics Data System (ADS)

2010-11-01

Ning Lin has been awarded the Natural Hazards Focus Group Award for Graduate Research, given annually to a recent Ph.D. recipient for outstanding contributions to natural hazards research. Lin's thesis is entitled “Multi-hazard risk analysis related to hurricanes.” She is scheduled to present an invited talk in the Extreme Natural Events: Modeling, Prediction, and Mitigation session (NH20) during the 2010 AGU Fall Meeting, held 13-17 December in San Francisco, Calif. Lin will be formally presented with the award at the Natural Hazards focus group reception on 14 December 2010.

Transcriptome Analysis of Sarracenia, an Insectivorous Plant

PubMed Central

Srivastava, Anuj; Rogers, Willie L.; Breton, Catherine M.; Cai, Liming; Malmberg, Russell L.

2011-01-01

Sarracenia species (pitcher plants) are carnivorous plants which obtain a portion of their nutrients from insects captured in the pitchers. To investigate these plants, we sequenced the transcriptome of two species, Sarracenia psittacina and Sarracenia purpurea, using Roche 454 pyrosequencing technology. We obtained 46 275 and 36 681 contigs by de novo assembly methods for S. psittacina and S. purpurea, respectively, and further identified 16 163 orthologous contigs between them. Estimation of synonymous substitution rates between orthologous and paralogous contigs indicates the events of genome duplication and speciation within the Sarracenia genus both occurred ∼2 million years ago. The ratios of synonymous and non-synonymous substitution rates indicated that 491 contigs have been under positive selection (Ka/Ks > 1). Significant proportions of these contigs were involved in functions related to binding activity. We also found that the greatest sequence similarity for both of these species was to Vitis vinifera, which is most consistent with a non-current classification of the order Ericales as an asterid. This study has provided new insights into pitcher plants and will contribute greatly to future research on this genus and its distinctive ecological adaptations. PMID:21676972

Transcriptome analysis of sarracenia, an insectivorous plant.

PubMed

Srivastava, Anuj; Rogers, Willie L; Breton, Catherine M; Cai, Liming; Malmberg, Russell L

2011-08-01

Sarracenia species (pitcher plants) are carnivorous plants which obtain a portion of their nutrients from insects captured in the pitchers. To investigate these plants, we sequenced the transcriptome of two species, Sarracenia psittacina and Sarracenia purpurea, using Roche 454 pyrosequencing technology. We obtained 46 275 and 36 681 contigs by de novo assembly methods for S. psittacina and S. purpurea, respectively, and further identified 16 163 orthologous contigs between them. Estimation of synonymous substitution rates between orthologous and paralogous contigs indicates the events of genome duplication and speciation within the Sarracenia genus both occurred ∼2 million years ago. The ratios of synonymous and non-synonymous substitution rates indicated that 491 contigs have been under positive selection (K(a)/K(s) > 1). Significant proportions of these contigs were involved in functions related to binding activity. We also found that the greatest sequence similarity for both of these species was to Vitis vinifera, which is most consistent with a non-current classification of the order Ericales as an asterid. This study has provided new insights into pitcher plants and will contribute greatly to future research on this genus and its distinctive ecological adaptations.

Local adaptation of Gymnocypris przewalskii (Cyprinidae) on the Tibetan Plateau

PubMed Central

Zhang, Renyi; Ludwig, Arne; Zhang, Cunfang; Tong, Chao; Li, Guogang; Tang, Yongtao; Peng, Zuogang; Zhao, Kai

2015-01-01

Divergent selection among environments affects species distributions and can lead to speciation. In this article, we investigated the transcriptomes of two ecotypes of scaleless carp (Gymnocypris przewalskii przewalskii and G. p. ganzihonensis) from the Tibetan Plateau. We used a transcriptome sequencing approach to screen approximately 250,000 expressed sequence tags (ESTs) from the gill and kidney tissues of twelve individuals from the Ganzi River and Lake Qinghai to understand how this freshwater fish has adapted to an ecological niche shift from saline to freshwater. We identified 9,429 loci in the gill transcriptome and 12,034 loci in the kidney transcriptome with significant differences in their expression, of which 242 protein-coding genes exhibited strong positive selection (Ka/Ks > 1). Many of the genes are involved in ion channel functions (e.g., Ca2+-binding proteins), immune responses (e.g., nephrosin) or cellular water absorption functions (e.g., aquaporins). These results have potentially broad importance in understanding shifts from saline to freshwater habitats. Furthermore, this study provides the first transcriptome of G. przewalskii, which will facilitate future ecological genomics studies and aid in the identification of genes underlying adaptation and incipient ecological speciation. PMID:25944748

[Molecular evolution of the sulphite efflux gene SSU1 in Saccharomyces cerevisiae].

PubMed

Peng, Li-Xin; Sun, Fei-Fei; Huang, Yan-Yan; Li, Zhen-Chong

2013-11-01

The SSU1 gene encoding a membrane sulfite pump is a main facilitator invovled in sulfite efflux. In Saccharomyce cerevisiae, various range of resistance to sulfite was observed among strains. To explore the evolution traits of SSU1 gene, the population data of S. cerevisiae were collected and analyzed. The phylogenetic analysis indicated that S. cerevisiae population can be classified into three sub-populations, and the positive selection was detected in population by McDonald-Kreitman test. The anaylsis of Ka/Ks ratios further showed that S. cerevisiae sub-population was undergoing positive selection. This finding was also supported by PAML branch model. Nine potential positive selection sites were predicted by branch-site model, and four sites exclusively belong to the sub-population under positive seletion. The data from ssulp protein structure demonstrated that three sites are substitutions between polar and hydrophobic amino acids, and only one site of substitutaion from basic amino acid to basic amino acid (345R/K). Because amino acid pKa values are crucial for sulfite pump to maintain their routine function, positive selection of these amino acid substitutions might affect sulfite efflux efficient.

The phylogenetic and evolutionary history of a novel alpha-globin-type gene in orangutans (Pongo pygmaeus).

PubMed

Steiper, Michael E; Wolfe, Nathan D; Karesh, William B; Kilbourn, Annelisa M; Bosi, Edwin J; Ruvolo, Maryellen

2006-07-01

The alpha-globin genes are implicated in human resistance to malaria, a disease caused by Plasmodium parasites. This study is the first to analyze DNA sequences from a novel alpha-globin-type gene in orangutans, a species affected by Plasmodium. Phylogenetic methods show that the gene is a duplication of an alpha-globin gene and is located 5' of alpha-2 globin. The alpha-globin-type gene is notable for having four amino acid replacements relative to the orangutan's alpha-1 and alpha-2 globin genes, with no synonymous differences. Pairwise K(a)/K(s) methods and likelihood ratio tests (LRTs) revealed that the evolutionary history of the alpha-globin-type gene has been marked by either neutral or positive evolution, but not purifying selection. A comparative analysis of the amino acid replacements of the alpha-globin-type gene with human hemoglobinopathies and hemoglobin structure showed that two of the four replaced sites are members of the same molecular bond, one that is crucial to the proper functioning of the hemoglobin molecule. This suggested an adaptive evolutionary change. Functionally, this locus may result in a thalassemia-like phenotype in orangutans, possibly as an adaptation to combat Plasmodium.

Complete mitochondrial genome sequence from an endangered Indian snake, Python molurus molurus (Serpentes, Pythonidae).

PubMed

Dubey, Bhawna; Meganathan, P R; Haque, Ikramul

2012-07-01

This paper reports the complete mitochondrial genome sequence of an endangered Indian snake, Python molurus molurus (Indian Rock Python). A typical snake mitochondrial (mt) genome of 17258 bp length comprising of 37 genes including the 13 protein coding genes, 22 tRNA genes, and 2 ribosomal RNA genes along with duplicate control regions is described herein. The P. molurus molurus mt. genome is relatively similar to other snake mt. genomes with respect to gene arrangement, composition, tRNA structures and skews of AT/GC bases. The nucleotide composition of the genome shows that there are more A-C % than T-G% on the positive strand as revealed by positive AT and CG skews. Comparison of individual protein coding genes, with other snake genomes suggests that ATP8 and NADH3 genes have high divergence rates. Codon usage analysis reveals a preference of NNC codons over NNG codons in the mt. genome of P. molurus. Also, the synonymous and non-synonymous substitution rates (ka/ks) suggest that most of the protein coding genes are under purifying selection pressure. The phylogenetic analyses involving the concatenated 13 protein coding genes of P. molurus molurus conformed to the previously established snake phylogeny.

From Urey To The Ocean's Glacial Ph: News From The Boron-11 Paleo-acidimetry.

NASA Astrophysics Data System (ADS)

Zeebe, R. E.; Wolf-Gladrow, D. A.; Bijma, J.

Boron paleo-acidimetry is based on the stable boron isotope composition of foraminiferal shells which has been shown to be a function of seawater pH. It is cur- rently one of the most promising paleo-carbonate chemistry proxies. One important parameter of the proxy is the equilibrium fractionation between the dissolved boron species B(OH)3 and B(OH)- which was calculated to be 19 per mil at 25C by Kak- 4 ihana and Kotaka (1977), based on Urey's theory. The calculated equilibrium frac- tionation, however, depends on the vibrational frequencies of the molecules for which different values have been reported in the literature. We have recalculated the equilib- rium fractionation and find that it may be distinctly different from 19 per mil (this is the bad news). The good news is that - theoretically - the use of 11B as a paleo-pH indicator is not compromised through vital effects in planktonic foraminifera. We de- rive this conclusion by the use of a diffusion-reaction model that calculates pH profiles and 11B values in the vicinity of a foraminifer.

The grapevine kinome: annotation, classification and expression patterns in developmental processes and stress responses.

PubMed

Zhu, Kaikai; Wang, Xiaolong; Liu, Jinyi; Tang, Jun; Cheng, Qunkang; Chen, Jin-Gui; Cheng, Zong-Ming Max

2018-01-01

Protein kinases (PKs) have evolved as the largest family of molecular switches that regulate protein activities associated with almost all essential cellular functions. Only a fraction of plant PKs, however, have been functionally characterized even in model plant species. In the present study, the entire grapevine kinome was identified and annotated using the most recent version of the grapevine genome. A total of 1168 PK-encoding genes were identified and classified into 20 groups and 121 families, with the RLK-Pelle group being the largest, with 872 members. The 1168 kinase genes were unevenly distributed over all 19 chromosomes, and both tandem and segmental duplications contributed to the expansion of the grapevine kinome, especially of the RLK-Pelle group. Ka/Ks values indicated that most of the tandem and segmental duplication events were under purifying selection. The grapevine kinome families exhibited different expression patterns during plant development and in response to various stress treatments, with many being coexpressed. The comprehensive annotation of grapevine kinase genes, their patterns of expression and coexpression, and the related information facilitate a more complete understanding of the roles of various grapevine kinases in growth and development, responses to abiotic stress, and evolutionary history.

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes

PubMed Central

2011-01-01

Background A gene's position in regulatory, protein interaction or metabolic networks can be predictive of the strength of purifying selection acting on it, but these relationships are neither universal nor invariably strong. Following work in bacteria, fungi and invertebrate animals, we explore the relationship between selective constraint and metabolic function in mammals. Results We measure the association between selective constraint, estimated by the ratio of nonsynonymous (Ka) to synonymous (Ks) substitutions, and several, primarily metabolic, measures of gene function. We find significant differences between the selective constraints acting on enzyme-coding genes from different cellular compartments, with the nucleus showing higher constraint than genes from either the cytoplasm or the mitochondria. Among metabolic genes, the centrality of an enzyme in the metabolic network is significantly correlated with Ka/Ks. In contrast to yeasts, gene expression magnitude does not appear to be the primary predictor of selective constraint in these organisms. Conclusions Our results imply that the relationship between selective constraint and enzyme centrality is complex: the strength of selective constraint acting on mammalian genes is quite variable and does not appear to exclusively follow patterns seen in other organisms. PMID:21470417

Structure and evolution analysis of pollen receptor-like kinase in Zea mays and Arabidopsis thaliana.

PubMed

Wang, Dongxu; Wang, He; Irfan, Muhammad; Fan, Mingxia; Lin, Feng

2014-08-01

Receptor-like kinase (RLKs) is an important member in protein kinase family which is widely involved in plant growth, development and defense responses. It is significant to analyze the kinase structure and evolution of pollen RLKs in order to study their mechanisms. In our study, 64 and 73 putative pollen RLKs were chosen from maize and Arabidopsis. Phylogenetic analysis showed that the pollen RLKs were conservative and might had existed before divergence between monocot and dicot which were mainly concentrated in RLCK-VII and LRR-III two subfamilies. Chromosomal localization and gene duplication analysis showed the expansion of pollen RLKs were mainly caused by segmental duplication. By calculating Ka/Ks value of extracellular domain, intracellular domain and kinase domain in pollen RLKs, we found that the pollen RLKs duplicated genes had mainly experienced the purifying selection, while maize might have experienced weaker purifying selection. Meanwhile, extracellular domain might have experienced stronger diversifying selection than intracellular domain in both species. Estimation of duplication time showed that the duplication events of Arabidopsis have occurred approximately between 18 and 69 million years ago, compared to 0.67-170 million years ago of maize. Copyright © 2014 Elsevier Ltd. All rights reserved.

Flowfield Measurements in the Vortex Wake of a Missile at High Angle of Attack in Turbulence

DTIC Science & Technology

1988-12-01

pressure coefficient Cy: side force coefficient d: base diameter of the missile body F: blockage correction K: wind tunnel calibration factor LI : missile...and assistance in the wind tunnel apparatus and data acquisition s -;te1 m. I would like to thank Lt. Ao Chia-Ning. Republic of China Navy, Mr. Li ...axisymmetric missile configuration. 6- MO GRID + WIJS RE 1.33 E+05 z 2- Li 0- O C8 -C0 tq *tt~E I ’mtO0 E 5 , • r;.H/ 2 011USE 6 -6 x J! ’ 5SE 3 ,AHOSE

Self-Remediating Energetic Fills Based on Cyclic Dinitroureas

DTIC Science & Technology

2016-12-01

159 ° C (sample- dependent) c ,e Detonation pressure PCJ (GPa) 38.7h 46.2i - 37.98 g Detonation velocity D (km/sec) 9.07 j ~9.75 k,l 8.67 b 8.81 g...Gao, S.-L.; Zhu, C .-H.; Ning, B.-K.; Chen, P.; Luo, Y.; Song, J .- R.; Shi, Q.-Z. Chin. J . Chem. 2004, 22, 1075. TNGU was chosen to move forward...R.E.; DeSesso, J . II; Vogel, C . M. Comparison of the Relative Risks of CL-20 and RDX. Noblis Technical Report, July 2007; http://www.serdp- estcp.org

A study of the turn-up effect in the electron momentum spectroscopy

NASA Astrophysics Data System (ADS)

Dal Cappello, C.; Menas, F.; Houamer, S.; Popov, Yu V.; Roy, A. C.

2015-10-01

Recently, a number of electron momentum spectroscopy measurements for the ionization of atoms and molecules have shown that the triple differential cross section (TDCS) has an unexpected higher intensity in a low momentum regime (Brunger M J, Braidwood S W, Mc Carthy I E and Weigold E 1994 J. Phys. B: At. Mol. Opt. Phys. 27 L597, Hollebone B P, Neville J J, Zheng Y, Brion C E, Wang Y and Davidson E R 1995 Chem. Phys. 196 13, Brion C E, Zheng Y, Rolke J, Neville J J, McCarthy I E and Wang J 1998 J. Phys. B: At. Mol. Opt. Phys. 31 L223, Ren X G, Ning C G, Deng J K, Zhang S F, Su G L, Huang F and Li G Q 2005 Phys. Rev. Lett. 94 163201, Deng J K, et al 2001 J. Chem. Phys. 114 882, Ning C G, Ren X G, Deng J K, Su G L, Zhang S F and Li G Q 2006 Phys. Rev. A 73 022704). This surprising result is now called the turn-up effect. Our aim is to investigate such an effect by studying the case of the ionization of atomic hydrogen in an excited state using the 3C model (Brauner M, Briggs J S and Klar H 1989 J. Phys. B: At. Mol. Opt. Phys. 22 2265) which is able to describe all the measured results of the single ionization of atomic hydrogen in its ground state for an incident energy beyond 200 eV. A comparison is also made of the findings of the present method with those of the plane wave impulse approximation and distorted wave models.

Analysis of point source pollution and water environmental quality variation trends in the Nansi Lake basin from 2002 to 2012.

PubMed

Wang, Weiliang; Liu, Xiaohui; Wang, Yufan; Guo, Xiaochun; Lu, Shaoyong

2016-03-01

Based on the data analysis of the water environmental quality and economic development from 2002 to 2012 in the Nansi Lake basin, the correlation and change between the water environmental quality and economic development were studied. Results showed that the GDP and wastewater emissions of point source in the Nansi Lake basin had an average annual growth of 7.30 and 7.68 %, respectively, from 2002 to 2012. The emissions of chemical oxygen demand (COD) and ammonia nitrogen (NH3-N) had the average annual decrease of 7.69 and 6.79 % in 2012, respectively, compared to 2002. Basin water quality overall improved, reaching the Class III of the "Environmental quality standards for surface water (GB3838-2002)," in which the main reason was that sewage treatment rate increased gradually and was above 90 % in 2012 (an increase of 10 % compared to 2002) with the progress of pollution abatement technology and the implementation of relevant policies and regulations. The contribution of water environmental pollution was analyzed from related cities (Ji'ning, Zaozhuang, Heze). Results indicated that Ji'ning had the largest contribution to water pollution of the Nansi Lake basin, and the pollutant from domestic sources accounted for a higher percentage compared to industrial sources. The wastewater, COD, and NH3-N mainly came from mining and washing of coal, manufacture of raw chemical materials and chemical products, papermaking industry, and food processing industry. According to the water pollution characteristics of the Nansi Lake basin, the basin pollution treatment strategy and prevention and treatment system were dissected to provide a scientific basis for prevention and control of lakeside point source pollution along the Nansi Lake.

Genetic variation of coat protein gene among the isolates of Rice tungro spherical virus from tungro-endemic states of the India.

PubMed

Mangrauthia, Satendra K; Malathi, P; Agarwal, Surekha; Ramkumar, G; Krishnaveni, D; Neeraja, C N; Madhav, M Sheshu; Ladhalakshmi, D; Balachandran, S M; Viraktamath, B C

2012-06-01

Rice tungro disease, one of the major constraints to rice production in South and Southeast Asia, is caused by a combination of two viruses: Rice tungro spherical virus (RTSV) and Rice tungro bacilliform virus (RTBV). The present study was undertaken to determine the genetic variation of RTSV population present in tungro endemic states of Indian subcontinent. Phylogenetic analysis based on coat protein sequences showed distinct divergence of Indian RTSV isolates into two groups; one consisted isolates from Hyderabad (Andhra Pradesh), Cuttack (Orissa), and Puducherry and another from West Bengal, Coimbatore (Tamil Nadu), and Kanyakumari (Tamil Nadu). The results obtained from phylogenetic study were further supported with the SNPs (single nucleotide polymorphism), INDELs (insertion and deletion) and evolutionary distance analysis. In addition, sequence difference count matrix revealed 2-68 nucleotides differences among all the Indian RTSV isolates taken in this study. However, at the protein level these differences were not significant as revealed by Ka/Ks ratio calculation. Sequence identity at nucleotide and amino acid level was 92-100% and 97-100%, respectively, among Indian isolates of RTSV. Understanding of the population structure of RTSV from tungro endemic regions of India would potentially provide insights into the molecular diversification of this virus.

The complete nucleotide sequences of the 5 genetically distinct plastid genomes of Oenothera, subsection Oenothera: II. A microevolutionary view using bioinformatics and formal genetic data.

PubMed

Greiner, Stephan; Wang, Xi; Herrmann, Reinhold G; Rauwolf, Uwe; Mayer, Klaus; Haberer, Georg; Meurer, Jörg

2008-09-01

A unique combination of genetic features and a rich stock of information make the flowering plant genus Oenothera an appealing model to explore the molecular basis of speciation processes including nucleus-organelle coevolution. From representative species, we have recently reported complete nucleotide sequences of the 5 basic and genetically distinguishable plastid chromosomes of subsection Oenothera (I-V). In nature, Oenothera plastid genomes are associated with 6 distinct, either homozygous or heterozygous, diploid nuclear genotypes of the 3 basic genomes A, B, or C. Artificially produced plastome-genome combinations that do not occur naturally often display interspecific plastome-genome incompatibility (PGI). In this study, we compare formal genetic data available from all 30 plastome-genome combinations with sequence differences between the plastomes to uncover potential determinants for interspecific PGI. Consistent with an active role in speciation, a remarkable number of genes have high Ka/Ks ratios. Different from the Solanacean cybrid model Atropa/tobacco, RNA editing seems not to be relevant for PGIs in Oenothera. However, predominantly sequence polymorphisms in intergenic segments are proposed as possible sources for PGI. A single locus, the bidirectional promoter region between psbB and clpP, is suggested to contribute to compartmental PGI in the interspecific AB hybrid containing plastome I (AB-I), consistent with its perturbed photosystem II activity.

Turning gold into ‘junk’: transposable elements utilize central proteins of cellular networks

PubMed Central

Abrusán, György; Szilágyi, András; Zhang, Yang; Papp, Balázs

2013-01-01

The numerous discovered cases of domesticated transposable element (TE) proteins led to the recognition that TEs are a significant source of evolutionary innovation. However, much less is known about the reverse process, whether and to what degree the evolution of TEs is influenced by the genome of their hosts. We addressed this issue by searching for cases of incorporation of host genes into the sequence of TEs and examined the systems-level properties of these genes using the Saccharomyces cerevisiae and Drosophila melanogaster genomes. We identified 51 cases where the evolutionary scenario was the incorporation of a host gene fragment into a TE consensus sequence, and we show that both the yeast and fly homologues of the incorporated protein sequences have central positions in the cellular networks. An analysis of selective pressure (Ka/Ks ratio) detected significant selection in 37% of the cases. Recent research on retrovirus-host interactions shows that virus proteins preferentially target hubs of the host interaction networks enabling them to take over the host cell using only a few proteins. We propose that TEs face a similar evolutionary pressure to evolve proteins with high interacting capacities and take some of the necessary protein domains directly from their hosts. PMID:23341038

Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae.

PubMed

Boo, Ga Hun; Hughey, Jeffery R; Miller, Kathy Ann; Boo, Sung Min

2016-10-14

DNA sequences from type specimens provide independent, objective characters that enhance the value of type specimens and permit the correct application of species names to phylogenetic clades and specimens. We provide mitochondrial genomes (mitogenomes) from archival type specimens of ten species in agar-producing red algal genera Gelidium and Pterocladiella. The genomes contain 43-44 genes, ranging in size from 24,910 to 24,970 bp with highly conserved gene synteny. Low Ka/Ks ratios of apocytochrome b and cytochrome oxidase genes support their utility as markers. Phylogenies of mitogenomes and cox1+rbcL sequences clarified classification at the genus and species levels. Three species formerly in Gelidium and Pterocladia are transferred to Pterocladiella: P. media comb. nov., P. musciformis comb. nov., and P. luxurians comb. and stat. nov. Gelidium sinicola is merged with G. coulteri because they share identical cox1 and rbcL sequences. We describe a new species, Gelidium millariana sp. nov., previously identified as G. isabelae from Australia. We demonstrate that mitogenomes from type specimens provide a new tool for typifying species in the Gelidiales and that there is an urgent need for analyzing mitogenomes from type specimens of red algae and other morphologically simple organisms for insight into their nomenclature, taxonomy and evolution.

Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae

PubMed Central

Boo, Ga Hun; Hughey, Jeffery R.; Miller, Kathy Ann; Boo, Sung Min

2016-01-01

DNA sequences from type specimens provide independent, objective characters that enhance the value of type specimens and permit the correct application of species names to phylogenetic clades and specimens. We provide mitochondrial genomes (mitogenomes) from archival type specimens of ten species in agar-producing red algal genera Gelidium and Pterocladiella. The genomes contain 43–44 genes, ranging in size from 24,910 to 24,970 bp with highly conserved gene synteny. Low Ka/Ks ratios of apocytochrome b and cytochrome oxidase genes support their utility as markers. Phylogenies of mitogenomes and cox1+rbcL sequences clarified classification at the genus and species levels. Three species formerly in Gelidium and Pterocladia are transferred to Pterocladiella: P. media comb. nov., P. musciformis comb. nov., and P. luxurians comb. and stat. nov. Gelidium sinicola is merged with G. coulteri because they share identical cox1 and rbcL sequences. We describe a new species, Gelidium millariana sp. nov., previously identified as G. isabelae from Australia. We demonstrate that mitogenomes from type specimens provide a new tool for typifying species in the Gelidiales and that there is an urgent need for analyzing mitogenomes from type specimens of red algae and other morphologically simple organisms for insight into their nomenclature, taxonomy and evolution. PMID:27739454

The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus

PubMed Central

Keller, J.; Rousseau-Gueutin, M.; Martin, G.E.; Morice, J.; Boutte, J.; Coissac, E.; Ourari, M.; Aïnouche, M.; Salmon, A.; Cabello-Hurtado, F.

2017-01-01

Abstract The Fabaceae family is considered as a model system for understanding chloroplast genome evolution due to the presence of extensive structural rearrangements, gene losses and localized hypermutable regions. Here, we provide sequences of four chloroplast genomes from the Lupinus genus, belonging to the underinvestigated Genistoid clade. Notably, we found in Lupinus species the functional loss of the essential rps16 gene, which was most likely replaced by the nuclear rps16 gene that encodes chloroplast and mitochondrion targeted RPS16 proteins. To study the evolutionary fate of the rps16 gene, we explored all available plant chloroplast, mitochondrial and nuclear genomes. Whereas no plant mitochondrial genomes carry an rps16 gene, many plants still have a functional nuclear and chloroplast rps16 gene. Ka/Ks ratios revealed that both chloroplast and nuclear rps16 copies were under purifying selection. However, due to the dual targeting of the nuclear rps16 gene product and the absence of a mitochondrial copy, the chloroplast gene may be lost. We also performed comparative analyses of lupine plastomes (SNPs, indels and repeat elements), identified the most variable regions and examined their phylogenetic utility. The markers identified here will help to reveal the evolutionary history of lupines, Genistoids and closely related clades. PMID:28338826

Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.).

PubMed

Gu, Lijiao; Li, Libei; Wei, Hengling; Wang, Hantao; Su, Junji; Guo, Yaning; Yu, Shuxun

2018-01-01

WRKY transcription factors play important roles in plant defense, stress response, leaf senescence, and plant growth and development. Previous studies have revealed the important roles of the group IIa GhWRKY genes in cotton. To comprehensively analyze the group IIa GhWRKY genes in upland cotton, we identified 15 candidate group IIa GhWRKY genes in the Gossypium hirsutum genome. The phylogenetic tree, intron-exon structure, motif prediction and Ka/Ks analyses indicated that most group IIa GhWRKY genes shared high similarity and conservation and underwent purifying selection during evolution. In addition, we detected the expression patterns of several group IIa GhWRKY genes in individual tissues as well as during leaf senescence using public RNA sequencing data and real-time quantitative PCR. To better understand the functions of group IIa GhWRKYs in cotton, GhWRKY17 (KF669857) was isolated from upland cotton, and its sequence alignment, promoter cis-acting elements and subcellular localization were characterized. Moreover, the over-expression of GhWRKY17 in Arabidopsis up-regulated the senescence-associated genes AtWRKY53, AtSAG12 and AtSAG13, enhancing the plant's susceptibility to leaf senescence. These findings lay the foundation for further analysis and study of the functions of WRKY genes in cotton.

Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.)

PubMed Central

Gu, Lijiao; Li, Libei; Wei, Hengling; Wang, Hantao; Su, Junji; Guo, Yaning

2018-01-01

WRKY transcription factors play important roles in plant defense, stress response, leaf senescence, and plant growth and development. Previous studies have revealed the important roles of the group IIa GhWRKY genes in cotton. To comprehensively analyze the group IIa GhWRKY genes in upland cotton, we identified 15 candidate group IIa GhWRKY genes in the Gossypium hirsutum genome. The phylogenetic tree, intron-exon structure, motif prediction and Ka/Ks analyses indicated that most group IIa GhWRKY genes shared high similarity and conservation and underwent purifying selection during evolution. In addition, we detected the expression patterns of several group IIa GhWRKY genes in individual tissues as well as during leaf senescence using public RNA sequencing data and real-time quantitative PCR. To better understand the functions of group IIa GhWRKYs in cotton, GhWRKY17 (KF669857) was isolated from upland cotton, and its sequence alignment, promoter cis-acting elements and subcellular localization were characterized. Moreover, the over-expression of GhWRKY17 in Arabidopsis up-regulated the senescence-associated genes AtWRKY53, AtSAG12 and AtSAG13, enhancing the plant’s susceptibility to leaf senescence. These findings lay the foundation for further analysis and study of the functions of WRKY genes in cotton. PMID:29370286

Evolutionary characterization of hemagglutinin gene of H9N2 influenza viruses isolated from Asia.

PubMed

Shahsavandi, Shahla; Salmanian, Ali-Hatef; Ghorashi, Seyed Ali; Masoudi, Shahin; Ebrahimi, Mohammad Majid

2012-08-01

The full length hemagglutinin (HA) genes of 287 H9N2 AI strains isolated from chickens in Asia during the period 1994-2009 were genetically analyzed. Phylogenetic analysis showed that G1-like viruses circulated in the Middle East and Indian sub-continent countries, whereas other sublineages existed in Far East countries. It also revealed G1-like viruses with an average 96.7% identity clustered into two subgroups largely based on their time of isolation. The Ka/Ks ratio was calculated 0.34 for subgroup 1 and 0.57 for subgroup 2 indicates purifying/stabilizing selection, but despite this there is evidence of localized positive selection when comparing the subgroups 1 and 2 protein sequences. Five sites in HA H9N2 viruses had a posterior probability >0.5 using the Bayesian method, indicating these sites were under positive selection. These sites were found to be associated with the globular head region of HA. To identify sites under positive selection; amino acid substitution classified depends on their radicalism and neutrality. The results indicate that, although most positions in HAs were under purifying selection and can be eliminated, a few positions located in the antigenic regions and receptor binding sites were subject to positive selection. Copyright © 2011 Elsevier Ltd. All rights reserved.

Molecular evolution and expression divergence of the Populus euphratica Hsf genes provide insight into the stress acclimation of desert poplar

PubMed Central

Zhang, Jin; Jia, Huixia; Li, Jianbo; Li, Yu; Lu, Mengzhu; Hu, Jianjun

2016-01-01

Heat shock transcription factor (Hsf) family is one of the most important regulators in the plant kingdom. Hsf has been demonstrated to be involved in various processes associated with plant growth, development as well as in response to hormone and abiotic stresses. In this study, we carried out a comprehensive analysis of Hsf family in desert poplar, Populus euphratica. Total of 32 genes encoding Hsf were identified and they were classified into three main classes (A, B, and C). Gene structure and conserved motif analyses indicated that the members in each class were relatively conserved. Total of 10 paralogous pairs were identified in PeuHsf family, in which nine pairs were generated by whole genome duplication events. Ka/Ks analysis showed that PeuHsfs underwent purifying selection pressure. In addition, various cis-acting elements involved in hormone and stress responses located in the promoter regions of PeuHsfs. Gene expression analysis indicated that several PeuHsfs were tissue-specific expression. Compared to Arabidopsis, more PeuHsf genes were significantly induced by heat, drought, and salt stresses (21, 19, and 22 PeuHsfs, respectively). Our findings are helpful in understanding the distinguished adaptability of P. euphratica to extreme environment and providing a basis for functional analysis of PeuHsfs in the future. PMID:27425424

Transcriptome profile and unique genetic evolution of positively selected genes in yak lungs.

PubMed

Lan, DaoLiang; Xiong, XianRong; Ji, WenHui; Li, Jian; Mipam, Tserang-Donko; Ai, Yi; Chai, ZhiXin

2018-04-01

The yak (Bos grunniens), which is a unique bovine breed that is distributed mainly in the Qinghai-Tibetan Plateau, is considered a good model for studying plateau adaptability in mammals. The lungs are important functional organs that enable animals to adapt to their external environment. However, the genetic mechanism underlying the adaptability of yak lungs to harsh plateau environments remains unknown. To explore the unique evolutionary process and genetic mechanism of yak adaptation to plateau environments, we performed transcriptome sequencing of yak and cattle (Bos taurus) lungs using RNA-Seq technology and a subsequent comparison analysis to identify the positively selected genes in the yak. After deep sequencing, a normal transcriptome profile of yak lung that containing a total of 16,815 expressed genes was obtained, and the characteristics of yak lungs transcriptome was described by functional analysis. Furthermore, Ka/Ks comparison statistics result showed that 39 strong positively selected genes are identified from yak lungs. Further GO and KEGG analysis was conducted for the functional annotation of these genes. The results of this study provide valuable data for further explorations of the unique evolutionary process of high-altitude hypoxia adaptation in yaks in the Tibetan Plateau and the genetic mechanism at the molecular level.

Neutron-capture rates for explosive nucleosynthesis: the case of 68Ni(n, γ) 69Ni

DOE PAGES

Spyrou, Artemis; Larsen, Ann-Cecilie; Liddick, Sean N.; ...

2017-02-22

Neutron-capture reactions play an important role in heavy element nucleosynthesis, since they are the driving force for the two processes that create the vast majority of the heavy elements. When a neutron capture occurs on a short-lived nucleus, it is extremely challenging to study the reaction directly and therefore the use of indirect techniques is essential. The present work reports on such an indirect measurement that provides strong constraints on the 68Ni(n,g) 69Ni reaction rate.The commonly used reaction libraries JINA-REACLIB and BRUSLIB are in relatively good agreement with the experimental rate. The impact of the new rate on weak r-processmore » calculations is discussed.« less

Implementation Analysis of Cutting Tool Carbide with Cast Iron Material S45 C on Universal Lathe

NASA Astrophysics Data System (ADS)

Junaidi; hestukoro, Soni; yanie, Ahmad; Jumadi; Eddy

2017-12-01

Cutting tool is the tools lathe. Cutting process tool CARBIDE with Cast Iron Material Universal Lathe which is commonly found at Analysiscutting Process by some aspects numely Cutting force, Cutting Speed, Cutting Power, Cutting Indication Power, Temperature Zone 1 and Temperatur Zone 2. Purpose of this Study was to determine how big the cutting Speed, Cutting Power, electromotor Power,Temperatur Zone 1 and Temperatur Zone 2 that drives the chisel cutting CARBIDE in the Process of tur ning Cast Iron Material. Cutting force obtained from image analysis relationship between the recommended Component Cuting Force with plane of the cut and Cutting Speed obtained from image analysis of relationships between the recommended Cutting Speed Feed rate.

The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus.

PubMed

Keller, J; Rousseau-Gueutin, M; Martin, G E; Morice, J; Boutte, J; Coissac, E; Ourari, M; Aïnouche, M; Salmon, A; Cabello-Hurtado, F; Aïnouche, A

2017-08-01

The Fabaceae family is considered as a model system for understanding chloroplast genome evolution due to the presence of extensive structural rearrangements, gene losses and localized hypermutable regions. Here, we provide sequences of four chloroplast genomes from the Lupinus genus, belonging to the underinvestigated Genistoid clade. Notably, we found in Lupinus species the functional loss of the essential rps16 gene, which was most likely replaced by the nuclear rps16 gene that encodes chloroplast and mitochondrion targeted RPS16 proteins. To study the evolutionary fate of the rps16 gene, we explored all available plant chloroplast, mitochondrial and nuclear genomes. Whereas no plant mitochondrial genomes carry an rps16 gene, many plants still have a functional nuclear and chloroplast rps16 gene. Ka/Ks ratios revealed that both chloroplast and nuclear rps16 copies were under purifying selection. However, due to the dual targeting of the nuclear rps16 gene product and the absence of a mitochondrial copy, the chloroplast gene may be lost. We also performed comparative analyses of lupine plastomes (SNPs, indels and repeat elements), identified the most variable regions and examined their phylogenetic utility. The markers identified here will help to reveal the evolutionary history of lupines, Genistoids and closely related clades. © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

Transcriptome Sequencing and Positive Selected Genes Analysis of Bombyx mandarina

PubMed Central

Wu, Yuqian; Long, Renwen; Liu, Chun; Xia, Qingyou

2015-01-01

The wild silkworm Bombyx mandarina is widely believed to be an ancestor of the domesticated silkworm, Bombyx mori. Silkworms are often used as a model for studying the mechanism of species domestication. Here, we performed transcriptome sequencing of the wild silkworm using an Illumina HiSeq2000 platform. We produced 100,004,078 high-quality reads and assembled them into 50,773 contigs with an N50 length of 1764 bp and a mean length of 941.62 bp. A total of 33,759 unigenes were identified, with 12,805 annotated in the Nr database, 8273 in the Pfam database, and 9093 in the Swiss-Prot database. Expression profile analysis found significant differential expression of 1308 unigenes between the middle silk gland (MSG) and posterior silk gland (PSG). Three sericin genes (sericin 1, sericin 2, and sericin 3) were expressed specifically in the MSG and three fibroin genes (fibroin-H, fibroin-L, and fibroin/P25) were expressed specifically in the PSG. In addition, 32,297 Single-nucleotide polymorphisms (SNPs) and 361 insertion-deletions (INDELs) were detected. Comparison with the domesticated silkworm p50/Dazao identified 5,295 orthologous genes, among which 400 might have experienced or to be experiencing positive selection by Ka/Ks analysis. These data and analyses presented here provide insights into silkworm domestication and an invaluable resource for wild silkworm genomics research. PMID:25806526

Compound haplotypes at Xp11.23 and human population growth in Eurasia.

PubMed

Alonso, S; Armour, J A L

2004-09-01

To investigate patterns of diversity and the evolutionary history of Eurasians, we have sequenced a 2.8 kb region at Xp11.23 in a sample of African and Eurasian chromosomes. This region is in a long intron of CLCN5 and is immediately flanked by a highly variable minisatellite, DXS255, and a human-specific Ta0 LINE. Compared to Africans, Eurasians showed a marked reduction in sequence diversity. The main Euro-Asiatic haplotype seems to be the ancestral haplotype for the whole sample. Coalescent simulations, including recombination and exponential growth, indicate a median length of strong linkage disequilibrium, up to approximately 9 kb for this area. The Ka/Ks ratio between the coding sequence of human CLCN5 and its mouse orthologue is much less than 1. This implies that the region sequenced is unlikely to be under the strong influence of positive selective processes on CLCN5, mutations in which have been associated with disorders such as Dent's disease. In contrast, a scenario based on a population bottleneck and exponential growth seems a more likely explanation for the reduced diversity observed in Eurasians. Coalescent analysis and linked minisatellite diversity (which reaches a gene diversity value greater than 98% in Eurasians) suggest an estimated age of origin of the Euro-Asiatic diversity compatible with a recent out-of-Africa model for colonization of Eurasia by modern Homo sapiens.

Genererating a core cluster of Fasciola hepatica virulence and immunomodulation-related genes using a comparative in silico approach.

PubMed

Haçarız, Orçun; Sayers, Gearóid P

2018-04-01

A total of 71 virulence and immunomodulation-related transcripts (VIRs) of Fasciola hepatica have been previously proposed (Haçarız et al., 2015). In an attempt to further refine this cohort, an in silico meta analysis approach was carried out using publicly available sequence data of related liver flukes, Clonorchis sinensis and Opisthorchis viverrini. Data of both liver flukes were investigated in terms of sequential homology with data of non-parasitic organisms, pathogens and VIRs of F. hepatica, directional selection (Ka/Ks), and cytokine signaling relation (protein motif based). Some VIRs of F. hepatica [showing homology with immune receptors (for toll/interleukin-1, TGF-β or TNF-α), TGF-β, TNF-α, CD147, or relation with suppressors of cytokine signaling/IKBKE 1 or stimulation of TGF-β (through thrombospondin similarity)] were found to be orthologous with those of both C. sinensis and O. viverrini. The in silico analysis indicates that on the basis of genetic commonality, a total of 30 VIRs of F. hepatica are highlighted as of foremost importance in the parasite evasion strategy, through controlling of host immune system. Findings in this study could be important to further enhance our understanding of the parasitic mechanisms and develop effective control strategies against F. hepatica and other related parasites. Copyright © 2017 Elsevier Ltd. All rights reserved.

The NLP toxin family in Phytophthora sojae includes rapidly evolving groups that lack necrosis-inducing activity.

PubMed

Dong, Suomeng; Kong, Guanghui; Qutob, Dinah; Yu, Xiaoli; Tang, Junli; Kang, Jixiong; Dai, Tingting; Wang, Hai; Gijzen, Mark; Wang, Yuanchao

2012-07-01

Necrosis- and ethylene-inducing-like proteins (NLP) are widely distributed in eukaryotic and prokaryotic plant pathogens and are considered to be important virulence factors. We identified, in total, 70 potential Phytophthora sojae NLP genes but 37 were designated as pseudogenes. Sequence alignment of the remaining 33 NLP delineated six groups. Three of these groups include proteins with an intact heptapeptide (Gly-His-Arg-His-Asp-Trp-Glu) motif, which is important for necrosis-inducing activity, whereas the motif is not conserved in the other groups. In total, 19 representative NLP genes were assessed for necrosis-inducing activity by heterologous expression in Nicotiana benthamiana. Surprisingly, only eight genes triggered cell death. The expression of the NLP genes in P. sojae was examined, distinguishing 20 expressed and 13 nonexpressed NLP genes. Real-time reverse-transcriptase polymerase chain reaction results indicate that most NLP are highly expressed during cyst germination and infection stages. Amino acid substitution ratios (Ka/Ks) of 33 NLP sequences from four different P. sojae strains resulted in identification of positive selection sites in a distinct NLP group. Overall, our study indicates that expansion and pseudogenization of the P. sojae NLP family results from an ongoing birth-and-death process, and that varying patterns of expression, necrosis-inducing activity, and positive selection suggest that NLP have diversified in function.

The Current Use of Social Media in Undergraduate Nursing Education: A Review of the Literature.

PubMed

Ross, Jennifer Gunberg; Myers, Shannon Marie

2017-07-01

Social media, including blogs, Twitter, wikis, Facebook, YouTube, and Ning, provides an opportunity for nurse educators to engage undergraduate nursing students who are members of the millennial generation in active learning while enhancing knowledge and fostering communication. Despite the rise of social media usage in undergraduate nursing education, there is a significant deficiency of empirical evidence supporting the efficacy and outcomes of these teaching strategies. This article provides an overview of social media use in undergraduate nursing education and a review of the existing research related to social media use in prelicensure nursing education. Overall, undergraduate nursing students respond positively to social media use in nursing education; however, no outcome measures are available to determine the effect of these teaching strategies on student learning.

Race, exercise training, and outcomes in chronic heart failure: Findings from Heart Failure - A Controlled Trial Investigating Outcomes in Exercise TraiNing (HF-ACTION)

PubMed Central

Mentz, Robert J.; Bittner, Vera; Schulte, Phillip J.; Fleg, Jerome L.; Piña, Ileana L.; Keteyian, Steven J.; Moe, Gordon; Nigam, Anil; Swank, Ann M.; Onwuanyi, Anekwe E.; Fitz-Gerald, Meredith; Kao, Andrew; Ellis, Stephen J.; Kraus, William E.; Whellan, David J.; O'Connor, Christopher M.

2014-01-01

Background The strength of race as an independent predictor of long-term outcomes in a contemporary chronic heart failure (HF) population and its association with exercise training response have not been well established. We aimed to investigate the association between race and outcomes and to explore interactions with exercise training in patients with ambulatory HF. Methods We performed an analysis of HF-ACTION, which randomized 2331 patients with HF having an ejection fraction ≤35% to usual care with or without exercise training. We examined characteristics and outcomes (mortality/hospitalization, mortality, and cardiovascular mortality/HF hospitalization) by race using adjusted Cox models and explored an interaction with exercise training. Results There were 749 self-identified black patients (33%). Blacks were younger with significantly more hypertension and diabetes, less ischemic etiology, and lower socioeconomic status versus whites. Blacks had shorter 6-minute walk distance and lower peak VO2 at baseline. Over a median follow-up of 2.5 years, black race was associated with increased risk for all outcomes except mortality. After multivariable adjustment, black race was associated with increased mortality/hospitalization (hazard ratio [HR] 1.16, 95% CI 1.01–1.33) and cardiovascular mortality/HF hospitalization (HR 1.46, 95% CI 1.20–1.77). The hazard associated with black race was largely caused by increased HF hospitalization (HR 1.58, 95% CI 1.27–1.96), given similar cardiovascular mortality. There was no interaction between race and exercise training on outcomes (P >.5). Conclusions Black race in patients with chronic HF was associated with increased prevalence of modifiable risk factors, lower exercise performance, and increased HF hospitalization, but not increased mortality or a differential response to exercise training. PMID:24016498

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays

PubMed Central

Bernardo, Amy N; Bradbury, Peter J; Ma, Hongxiang; Hu, Shengwa; Bowden, Robert L; Buckler, Edward S; Bai, Guihua

2009-01-01

Background Wheat (Triticum aestivum L.) is a staple food crop worldwide. The wheat genome has not yet been sequenced due to its huge genome size (~17,000 Mb) and high levels of repetitive sequences; the whole genome sequence may not be expected in the near future. Available linkage maps have low marker density due to limitation in available markers; therefore new technologies that detect genome-wide polymorphisms are still needed to discover a large number of new markers for construction of high-resolution maps. A high-resolution map is a critical tool for gene isolation, molecular breeding and genomic research. Single feature polymorphism (SFP) is a new microarray-based type of marker that is detected by hybridization of DNA or cRNA to oligonucleotide probes. This study was conducted to explore the feasibility of using the Affymetrix GeneChip to discover and map SFPs in the large hexaploid wheat genome. Results Six wheat varieties of diverse origins (Ning 7840, Clark, Jagger, Encruzilhada, Chinese Spring, and Opata 85) were analyzed for significant probe by variety interactions and 396 probe sets with SFPs were identified. A subset of 164 unigenes was sequenced and 54% showed polymorphism within probes. Microarray analysis of 71 recombinant inbred lines from the cross Ning 7840/Clark identified 955 SFPs and 877 of them were mapped together with 269 simple sequence repeat markers. The SFPs were randomly distributed within a chromosome but were unevenly distributed among different genomes. The B genome had the most SFPs, and the D genome had the least. Map positions of a selected set of SFPs were validated by mapping single nucleotide polymorphism using SNaPshot and comparing with expressed sequence tags mapping data. Conclusion The Affymetrix array is a cost-effective platform for SFP discovery and SFP mapping in wheat. The new high-density map constructed in this study will be a useful tool for genetic and genomic research in wheat. PMID:19480702

Nursing competency and organizational climate as perceived by staff nurses in a Chinese university hospital.

PubMed

Ying, Liu; Kunaviktikul, Wipada; Tonmukayakal, Ouyporn

2007-09-01

Nursing competency is important to ensure patient safety and improve the quality of nursing care. Based on competency-based human resource management strategies, the organizational climate can positively influence nursing competency. However, a review of the literature indicated that there were no studies about the relationship between nursing competency and organizational climate in the People's Republic of China. This descriptive, correlational study examined the relationship between nursing competency and the organizational climate. The sample consisted of 243 staff nurses who completed the questionnaire worked at one university hospital in Liao Ning Province. The findings showed that there was a significantly moderate positive relationship between nursing competency and organizational climate. The study results suggested that Chinese nurse managers should maintain and provide a positive organizational climate to improve nursing competency.

[Study on origin of meridians and collaterals through pain relieving effect of muscle regions].

PubMed

Dong, Bao-Qiang; Li, Chun-Ri; Huang, Feng-Yun; Zhang, Shu-Jian; Xue, Li-Gong

2011-08-01

Through analysis on sequencing of meridians and their muscle regions, their pertaining organs, run ning courses, linking and indications described in Zubi Shiyimai (Eleven Meridian of Foot and Hand), Yinyang Shiyimai (Eleven Meridian of Yinyang), Lingshu: Jingmai (Miraculous Pivot: Meridian) and Lingshu: Jinjing (Miraculous Pivot: Muscle Meridian), it is found that most of the indications of acupuncture in ancient time are symptoms of the muscle regions. 62.59% points of the national standard acupoints location close to tender points of the muscle regions, which indicates that the origin of early acupoints are tender points along the running courses of the muscle regions. Thus, it is concluded that meridians and their muscle regions have the same origin, which provides new train of thinking for a better comprehension of origin of meridians and collaterals.

Les infections à Pseudomonas aeruginosa au service des maladies infectieuses du CHU YO, Burkina Faso: à propos deux cas

PubMed Central

Mamoudou, Savadogo; Lassina, Dao; Fla, Koueta

2015-01-01

Nous rapportons deux cas d'infection à Pseudomonas aeruginosa: un cas de méningite et un cas d'infection urinaire. Les auteurs rappellent qu’à côté des étiologies classiques des méningites et des infections urinaires, des germes résistants comme Pseudomonas aeruginosa peuvent être responsables d'infections à localisation méningées et urinaires et dont il faut connaître pour une bonne prise en charge. Le traitement de ces infections requiert un antibiogramme au regard de la grande capacité de résistance de Pseudomonas aeruginosa en milieu hospitalier. La limitation des gestes invasifs et l'application rigoureuse des mesures de prévention des infections en milieu hospitalier contribueront à lutter efficacement contre ces infections en milieu de soins. PMID:26491521

Comparative genomics of chemosensory protein genes (CSPs) in twenty-two mosquito species (Diptera: Culicidae): Identification, characterization, and evolution

PubMed Central

Fu, Wen-Bo; Li, Bo; He, Zheng-Bo

2018-01-01

Chemosensory proteins (CSP) are soluble carrier proteins that may function in odorant reception in insects. CSPs have not been thoroughly studied at whole-genome level, despite the availability of insect genomes. Here, we identified/reidentified 283 CSP genes in the genomes of 22 mosquitoes. All 283 CSP genes possess a highly conserved OS-D domain. We comprehensively analyzed these CSP genes and determined their conserved domains, structure, genomic distribution, phylogeny, and evolutionary patterns. We found an average of seven CSP genes in each of 19 Anopheles genomes, 27 CSP genes in Cx. quinquefasciatus, 43 in Ae. aegypti, and 83 in Ae. albopictus. The Anopheles CSP genes had a simple genomic organization with a relatively consistent gene distribution, while most of the Culicinae CSP genes were distributed in clusters on the scaffolds. Our phylogenetic analysis clustered the CSPs into two major groups: CSP1-8 and CSE1-3. The CSP1-8 groups were all monophyletic with good bootstrap support. The CSE1-3 groups were an expansion of the CSP family of genes specific to the three Culicinae species. The Ka/Ks ratios indicated that the CSP genes had been subject to purifying selection with relatively slow evolution. Our results provide a comprehensive framework for the study of the CSP gene family in these 22 mosquito species, laying a foundation for future work on CSP function in the detection of chemical cues in the surrounding environment. PMID:29304168

Comparative genomics of chemosensory protein genes (CSPs) in twenty-two mosquito species (Diptera: Culicidae): Identification, characterization, and evolution.

PubMed

Mei, Ting; Fu, Wen-Bo; Li, Bo; He, Zheng-Bo; Chen, Bin

2018-01-01

Chemosensory proteins (CSP) are soluble carrier proteins that may function in odorant reception in insects. CSPs have not been thoroughly studied at whole-genome level, despite the availability of insect genomes. Here, we identified/reidentified 283 CSP genes in the genomes of 22 mosquitoes. All 283 CSP genes possess a highly conserved OS-D domain. We comprehensively analyzed these CSP genes and determined their conserved domains, structure, genomic distribution, phylogeny, and evolutionary patterns. We found an average of seven CSP genes in each of 19 Anopheles genomes, 27 CSP genes in Cx. quinquefasciatus, 43 in Ae. aegypti, and 83 in Ae. albopictus. The Anopheles CSP genes had a simple genomic organization with a relatively consistent gene distribution, while most of the Culicinae CSP genes were distributed in clusters on the scaffolds. Our phylogenetic analysis clustered the CSPs into two major groups: CSP1-8 and CSE1-3. The CSP1-8 groups were all monophyletic with good bootstrap support. The CSE1-3 groups were an expansion of the CSP family of genes specific to the three Culicinae species. The Ka/Ks ratios indicated that the CSP genes had been subject to purifying selection with relatively slow evolution. Our results provide a comprehensive framework for the study of the CSP gene family in these 22 mosquito species, laying a foundation for future work on CSP function in the detection of chemical cues in the surrounding environment.

Evolutionary Pattern of the FAE1 Gene in Brassicaceae and Its Correlation with the Erucic Acid Trait

PubMed Central

Li, Mimi; Peng, Bin; Guo, Haisong; Yan, Qinqin; Hang, Yueyu

2013-01-01

The fatty acid elongase 1 (FAE1) gene catalyzes the initial condensation step in the elongation pathway of VLCFA (very long chain fatty acid) biosynthesis and is thus a key gene in erucic acid biosynthesis. Based on a worldwide collection of 62 accessions representing 14 tribes, 31 genera, 51 species, 4 subspecies and 7 varieties, we conducted a phylogenetic reconstruction and correlation analysis between genetic variations in the FAE1 gene and the erucic acid trait, attempting to gain insight into the evolutionary patterns and the correlations between genetic variations in FAE1 and trait variations. The five clear, deeply diverged clades detected in the phylogenetic reconstruction are largely congruent with a previous multiple gene-derived phylogeny. The Ka/Ks ratio (<1) and overall low level of nucleotide diversity in the FAE1 gene suggest that purifying selection is the major evolutionary force acting on this gene. Sequence variations in FAE1 show a strong correlation with the content of erucic acid in seeds, suggesting a causal link between the two. Furthermore, we detected 16 mutations that were fixed between the low and high phenotypes of the FAE1 gene, which constitute candidate active sites in this gene for altering the content of erucic acid in seeds. Our findings begin to shed light on the evolutionary pattern of this important gene and represent the first step in elucidating how the sequence variations impact the production of erucic acid in plants. PMID:24358289

Finds in Belize document Late Classic Maya salt making and canoe transport

PubMed Central

McKillop, Heather

2005-01-01

How did people in preIndustrial ancient civilizations produce and distribute bulk items, such as salt, needed for everyday use by their large urban populations? This report focuses on the ancient Maya who obtained quantities of salt at cities in the interior of the Yucatan peninsula of Mexico, Belize, and Guatemala in an area where salt is scarce. I report the discovery of 41 Late Classic Maya saltworks (anno Domini 600–900) in Punta Ycacos Lagoon on the south coast of Belize, including one with the first-known ancient Maya canoe paddle. The discoveries add important empirical information for evaluating the extent of surplus salt production and river transport during the height of Late Classic civilization in the southern Maya lowlands. The discovery of the saltworks indicates that there was extensive production and distribution of goods and resources outside the cities in the interior of the Yucatan. The discovery of a wooden canoe paddle from one of the Punta Ycacos saltworks, Ka'k' Naab', ties the production of salt to its inland transport by rivers and documents the importance of canoe trade between the coast and the interior during the Late Classic. Archaeological discovery of multiple saltworks on the Belizean coast represents surplus production of salt destined largely for the inland Peten Maya during their Late Classic peak, underscoring the importance of non-state-controlled workshop production in preIndustrial societies. PMID:15809426

Accelerated Evolution of the ASPM Gene Controlling Brain Size Begins Prior to Human Brain Expansion

PubMed Central

Solomon, Gregory; Gersch, William; Yoon, Young-Ho; Collura, Randall; Ruvolo, Maryellen; Barrett, J. Carl; Woods, C. Geoffrey; Walsh, Christopher A

2004-01-01

Primary microcephaly (MCPH) is a neurodevelopmental disorder characterized by global reduction in cerebral cortical volume. The microcephalic brain has a volume comparable to that of early hominids, raising the possibility that some MCPH genes may have been evolutionary targets in the expansion of the cerebral cortex in mammals and especially primates. Mutations in ASPM, which encodes the human homologue of a fly protein essential for spindle function, are the most common known cause of MCPH. Here we have isolated large genomic clones containing the complete ASPM gene, including promoter regions and introns, from chimpanzee, gorilla, orangutan, and rhesus macaque by transformation-associated recombination cloning in yeast. We have sequenced these clones and show that whereas much of the sequence of ASPM is substantially conserved among primates, specific segments are subject to high Ka/Ks ratios (nonsynonymous/synonymous DNA changes) consistent with strong positive selection for evolutionary change. The ASPM gene sequence shows accelerated evolution in the African hominoid clade, and this precedes hominid brain expansion by several million years. Gorilla and human lineages show particularly accelerated evolution in the IQ domain of ASPM. Moreover, ASPM regions under positive selection in primates are also the most highly diverged regions between primates and nonprimate mammals. We report the first direct application of TAR cloning technology to the study of human evolution. Our data suggest that evolutionary selection of specific segments of the ASPM sequence strongly relates to differences in cerebral cortical size. PMID:15045028

Coltiviruses and Seadornaviruses in North America, Europe, and Asia

PubMed Central

Jaafar, Fauziah Mohd; de Micco, Philippe; de Lamballerie, Xavier

2005-01-01

Coltiviruses are tickborne viruses of the genus Coltivirus. The type species, Colorado tick fever virus (from North America), has been isolated from patients with flulike syndromes, meningitis, encephalitis, and other severe complications. Another coltivirus, Eyach virus, has been isolated from ticks in France and Germany and incriminated in febrile illnesses and neurologic syndromes. Seadornaviruses are endemic in Southeast Asia, particularly Indonesia and China. The prototype virus of the genus, Banna virus (BAV), has been isolated from many mosquito species, humans with encephalitis, pigs, and cattle. Two other seadornaviruses, Kadipiro and Liao Ning, were isolated only from mosquitoes. The epidemiology of seadornaviruses remains poorly documented. Evidence suggests that BAV is responsible for encephalitis in humans. Infection with BAV may be underreported because it circulates in regions with a high incidence of Japanese encephalitis and could be misdiagnosed as this disease. PMID:16318717

Spectroscopie résolue en temps par continuum femtoseconde Applications en neurobiologie

NASA Astrophysics Data System (ADS)

Ramstein, S.; Mottin, S.

2003-06-01

La spectroscopie résolue en temps utilisant un laser blanc femtoseconde est appliquée à la mesure in vivo des principaux absorbeurs du cerveau. Après génération adéquate du continuum de lumière blanche femtoseconde (50mW/[580-756nm] à 1Hz), cette source se propage dans la calvaria, les méninges et le cortex chez le rat anesthésié. La transmission est étudiée sur 7mm de distance entre l'impact laser et la fibre optique de collection. Le signal transmis est analysé dans la fenêtre 580-760nm, par un spectromètre couplé à une caméra à balayage de fente permettant la décorrélation de l'absorption et de la diffusion.

New contributions to physics by Prof. C. N. Yang: 2009-2011

NASA Astrophysics Data System (ADS)

Ma, Zhong-Qi

2016-01-01

In a seminal paper of 1967, Professor Chen Ning Yang found the full solution of the one-dimensional Fermi gas with a repulsive delta function interaction by using the Bethe ansatz and group theory. This work with a brilliant discovery of the Yang-Baxter equation has been inspiring new developments in mathematical physics, statistical physics, and many-body physics. Based on experimental developments in simulating many-body physics of one-dimensional systems of ultracold atoms, during a period from 2009 to 2011, Prof. Yang published seven papers on the exact properties of the ground state of bosonic and fermionic atoms with the repulsive delta function interaction and a confined potential to one dimension. Here I would like to share my experience in doing research work fortunately under the direct supervision of Prof. Yang in that period.

New Contributions to Physics by Prof. C. N. Yang: 2009-2011

NASA Astrophysics Data System (ADS)

Ma, Zhong-Qi

In a seminal paper of 1967, Professor Chen Ning Yang found the full solution of the one-dimensional Fermi gas with a repulsive delta function interaction by using the Bethe ansatz and group theory. This work with a brilliant discovery of the Yang-Baxter equation has been inspiring new developments in mathematical physics, statistical physics, and many-body physics. Based on experimental developments in simulating many-body physics of one-dimensional systems of ultracold atoms, during a period from 2009 to 2011, Prof. Yang published seven papers on the exact properties of the ground state of bosonic and fermionic atoms with the repulsive delta function interaction and a confined potential to one dimension. Here I would like to share my experience in doing research work fortunately under the direct supervision of Prof. Yang in that period.

Documentation for the MODFLOW 6 Groundwater Flow Model

USGS Publications Warehouse

Langevin, Christian D.; Hughes, Joseph D.; Banta, Edward R.; Niswonger, Richard G.; Panday, Sorab; Provost, Alden M.

2017-08-10

This report documents the Groundwater Flow (GWF) Model for a new version of MODFLOW called MODFLOW 6. The GWF Model for MODFLOW 6 is based on a generalized control-volume finite-difference approach in which a cell can be hydraulically connected to any number of surrounding cells. Users can define the model grid using one of three discretization packages, including (1) a structured discretization package for defining regular MODFLOW grids consisting of layers, rows, and columns, (2) a discretization by ver­tices package for defining layered unstructured grids consisting of layers and cells, and (3) a general unstruc­tured discretization package for defining flexible grids comprised of cells and their connection properties. For layered grids, a new capability is available for removing thin cells and vertically connecting cells overlying and underlying the thin cells. For complex problems involving water-table conditions, an optional Newton-Raphson formulation, based on the formulations in MODFLOW-NWT and MODFLOW-USG, can be acti­vated. Use of the Newton-Raphson formulation will often improve model convergence and allow solutions to be obtained for difficult problems that cannot be solved using the traditional wetting and drying approach. The GWF Model is divided into “packages,” as was done in previous MODFLOW versions. A package is the part of the model that deals with a single aspect of simulation. Packages included with the GWF Model include those related to internal calculations of groundwater flow (discretization, initial conditions, hydraulic conduc­tance, and storage), stress packages (constant heads, wells, recharge, rivers, general head boundaries, drains, and evapotranspiration), and advanced stress packages (streamflow routing, lakes, multi-aquifer wells, and unsaturated zone flow). An additional package is also available for moving water available in one package into the individual features of the advanced stress packages. The GWF Model

The human papillomavirus type 16 E6 oncoprotein activates mTORC1 signaling and increases protein synthesis.

PubMed

Spangle, Jennifer M; Münger, Karl

2010-09-01

The mammalian target of rapamycin (mTOR) kinase acts as a cellular rheostat that integrates signals from a variety of cellular signal transduction pathways that sense growth factor and nutrient availability as well as intracellular energy status. It was previously reported that the human papillomavirus type 16 (HPV16) E6 oncoprotein may activate the S6 protein kinase (S6K) through binding and E6AP-mediated degradation of the mTOR inhibitor tuberous sclerosis complex 2 (TSC2) (Z. Lu, X. Hu, Y. Li, L. Zheng, Y. Zhou, H. Jiang, T. Ning, Z. Basang, C. Zhang, and Y. Ke, J. Biol. Chem. 279:35664-35670, 2004; L. Zheng, H. Ding, Z. Lu, Y. Li, Y. Pan, T. Ning, and Y. Ke, Genes Cells 13:285-294, 2008). Our results confirmed that HPV16 E6 expression causes an increase in mTORC1 activity through enhanced phosphorylation of mTOR and activation of downstream signaling pathways S6K and eukaryotic initiation factor binding protein 1 (4E-BP1). However, we did not detect a decrease in TSC2 levels in HPV16 E6-expressing cells. We discovered, however, that HPV16 E6 expression causes AKT activation through the upstream kinases PDK1 and mTORC2 under conditions of nutrient deprivation. We show that HPV16 E6 expression causes an increase in protein synthesis by enhancing translation initiation complex assembly at the 5' mRNA cap and an increase in cap-dependent translation. The increase in cap-dependent translation likely results from HPV16 E6-induced AKT/mTORC1 activation, as the assembly of the translation initiation complex and cap-dependent translation are rapamycin sensitive. Lastly, coexpression of the HPV16 E6 and E7 oncoproteins does not affect HPV16 E6-induced activation of mTORC1 and cap-dependent translation. HPV16 E6-mediated activation of mTORC1 signaling and cap-dependent translation may be a mechanism to promote viral replication under conditions of limited nutrient supply in differentiated, HPV oncoprotein-expressing proliferating cells.

High genetic diversities between isolates of the fish parasite Cryptocaryon irritans (Ciliophora) suggest multiple cryptic species.

PubMed

Chi, Hongshu; Taik, Patricia; Foley, Emily J; Racicot, Alycia C; Gray, Hilary M; Guzzetta, Katherine E; Lin, Hsin-Yun; Song, Yen-Ling; Tung, Che-Huang; Zenke, Kosuke; Yoshinaga, Tomoyoshi; Cheng, Chao-Yin; Chang, Wei-Jen; Gong, Hui

2017-07-01

The ciliate protozoan Cryptocaryon irritans parasitizes marine fish and causes lethal white spot disease. Sporadic infections as well as large-scale outbreaks have been reported globally and the parasite's broad host range poses particular threat to the aquaculture and ornamental fish markets. In order to better understand C. irritans' population structure, we sequenced and compared mitochondrial cox-1, SSU rRNA, and ITS-1 sequences from 8 new isolates of C. irritans collected in China, Japan, and Taiwan. We detected two SSU rRNA haplotypes, which differ at three positions, separating the isolates into two main groups (I and II). Cox-1 sequences also support the division into two groups, and the cox-1 divergence between these two groups is unexpectedly high (9.28% for 1582 nucleotide positions). The divergence is much greater than that detected in Ichthyophthirius multifiliis, the ciliate protozoan causing freshwater white spot disease in fish, where intraspecies divergence on cox-1 sequence is only 1.95%. ITS-1 sequences derived from these eight isolates and from all other C. irritans isolates (deposited in the GenBank) not only support the two groups, but further suggest the presence of a third group with even greater sequence divergence. Finally, a small Ka/Ks ratio estimated from cox-1 sequences suggests that this gene in C. irritans remains under strong purifying selection. Taken together, the C. irritans species may consists of many subspecies and/or syngens. Further work is needed to determine if there is reproductive isolation between the groups we have defined. Copyright © 2017 Elsevier Inc. All rights reserved.

The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae).

PubMed

Zhuang, Yongbin; Tripp, Erin A

2017-04-01

The genus Ruellia (Wild Petunias; Acanthaceae) is characterized by an enormous diversity of floral shapes and colours manifested among closely related species. Using Illumina platform, we reconstructed the draft genome of Ruellia speciosa, with a scaffold size of 1,021 Mb (or ∼1.02 Gb) and an N50 size of 17,908 bp, spanning ∼93% of the estimated genome (∼1.1 Gb). The draft assembly predicted 40,124 gene models and phylogenetic analyses of four key enzymes involved in anthocyanin colour production [flavanone 3-hydroxylase (F3H), flavonoid 3'-hydroxylase (F3'H), flavonoid 3',5'-hydroxylase (F3'5'H), and dihydroflavonol 4-reductase (DFR)] found that most angiosperms here sampled harboured at least one copy of F3H, F3'H, and DFR. In contrast, fewer than one-half (but including R. speciosa) harboured a copy of F3'5'H, supporting observations that blue flowers and/or fruits, which this enzyme is required for, are less common among flowering plants. Ka/Ks analyses of duplicated copies of F3'H and DFR in R. speciosa suggested purifying selection in the former but detected evidence of positive selection in the latter. The genome sequence and annotation of R. speciosa represents only one of only four families sequenced in the large and important Asterid clade of flowering plants and, as such, will facilitate extensive future research on this diverse group, particularly with respect to floral evolution. © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae)

PubMed Central

Zhuang, Yongbin

2017-01-01

Abstract The genus Ruellia (Wild Petunias; Acanthaceae) is characterized by an enormous diversity of floral shapes and colours manifested among closely related species. Using Illumina platform, we reconstructed the draft genome of Ruellia speciosa, with a scaffold size of 1,021 Mb (or ∼1.02 Gb) and an N50 size of 17,908 bp, spanning ∼93% of the estimated genome (∼1.1 Gb). The draft assembly predicted 40,124 gene models and phylogenetic analyses of four key enzymes involved in anthocyanin colour production [flavanone 3-hydroxylase (F3H), flavonoid 3′-hydroxylase (F3′H), flavonoid 3′,5′-hydroxylase (F3′5′H), and dihydroflavonol 4-reductase (DFR)] found that most angiosperms here sampled harboured at least one copy of F3H, F3′H, and DFR. In contrast, fewer than one-half (but including R. speciosa) harboured a copy of F3′5′H, supporting observations that blue flowers and/or fruits, which this enzyme is required for, are less common among flowering plants. Ka/Ks analyses of duplicated copies of F3′H and DFR in R. speciosa suggested purifying selection in the former but detected evidence of positive selection in the latter. The genome sequence and annotation of R. speciosa represents only one of only four families sequenced in the large and important Asterid clade of flowering plants and, as such, will facilitate extensive future research on this diverse group, particularly with respect to floral evolution. PMID:28431014

Comparative transcriptome analysis between aquatic and aerial breathing organs of Channa argus to reveal the genetic basis underlying bimodal respiration.

PubMed

Jiang, Yanliang; Feng, Shuaisheng; Xu, Jian; Zhang, Songhao; Li, Shangqi; Sun, Xiaoqing; Xu, Peng

2016-10-01

Aerial breathing in fish was an important adaption for successful survival in hypoxic water. All aerial breathing fish are bimodal breathers. It is intriguing that they can obtain oxygen from both air and water. However, the genetic basis underlying bimodal breathing has not been extensively studied. In this study, we performed next-generation sequencing on a bimodal breathing fish, the Northern snakehead, Channa argus, and generated a transcriptome profiling of C. argus. A total of 53,591 microsatellites and 26,378 SNPs were identified and classified. A Ka/Ks analysis of the unigenes indicated that 63 genes were under strong positive selection. Furthermore, the transcriptomes from the aquatic breathing organ (gill) and the aerial breathing organ (suprabranchial chamber) were sequenced and compared, and the results showed 1,966 genes up-regulated in the gill and 2,727 genes up-regulated in the suprabranchial chamber. A gene pathway analysis concluded that four functional categories were significant, of which angiogenesis and elastic fibre formation were up-regulated in the suprabranchial chamber, indicating that the aerial breathing organ may be more efficient for gas exchange due to its highly vascularized and elastic structure. In contrast, ion uptake and transport and acid-base balance were up-regulated in the gill, indicating that the aquatic breathing organ functions in ion homeostasis and acid-base balance, in addition to breathing. Understanding the genetic mechanism underlying bimodal breathing will shed light on the initiation and importance of aerial breathing in the evolution of vertebrates. Copyright © 2016 Elsevier B.V. All rights reserved.

EST-derived SNP discovery and selective pressure analysis in Pacific white shrimp ( Litopenaeus vannamei)

NASA Astrophysics Data System (ADS)

Liu, Chengzhang; Wang, Xia; Xiang, Jianhai; Li, Fuhua

2012-09-01

Pacific white shrimp has become a major aquaculture and fishery species worldwide. Although a large scale EST resource has been publicly available since 2008, the data have not yet been widely used for SNP discovery or transcriptome-wide assessment of selective pressure. In this study, a set of 155 411 expressed sequence tags (ESTs) from the NCBI database were computationally analyzed and 17 225 single nucleotide polymorphisms (SNPs) were predicted, including 9 546 transitions, 5 124 transversions and 2 481 indels. Among the 7 298 SNP substitutions located in functionally annotated contigs, 58.4% (4 262) are non-synonymous SNPs capable of introducing amino acid mutations. Two hundred and fifty nonsynonymous SNPs in genes associated with economic traits have been identified as candidates for markers in selective breeding. Diversity estimates among the synonymous nucleotides were on average 3.49 times greater than those in non-synonymous, suggesting negative selection. Distribution of non-synonymous to synonymous substitutions (Ka/Ks) ratio ranges from 0 to 4.01, (average 0.42, median 0.26), suggesting that the majority of the affected genes are under purifying selection. Enrichment analysis identified multiple gene ontology categories under positive or negative selection. Categories involved in innate immune response and male gamete generation are rich in positively selected genes, which is similar to reports in Drosophila and primates. This work is the first transcriptome-wide assessment of selective pressure in a Penaeid shrimp species. The functionally annotated SNPs provide a valuable resource of potential molecular markers for selective breeding.

Increased Transparency and Consumer Protections for 2016 Marketplace Plans.

PubMed

Brooks-LaSure, Chiquita

2015-12-01

The open enrollment period that ends in December 2015 for coverage begin­ning January 2016 marks the third year of the health care exchanges or marketplaces and of coverage through new qualified health plans. This issue brief investigates several key changes to the qualified health plans, with a focus on increased transparency and consumer protections. A new out-of-pocket costs calculator, requirements regarding provider networks, and prescription drug cost-sharing requirements should serve to better inform and improve consumer selection. In addition, several policy changes will help individuals with more severe health needs. These include: improved prescription drug coverage for HIV/ AIDS and other conditions, allowing prescription drugs that are obtained through the "exceptions" process to count toward the out-of-pocket spending cap, more comprehensive and consistent habilitative coverage, and an individual out-of-pocket spending cap within the family out-of-pocket maximum.

Fistules carotido-caverneuses post-traumatiques à propos d'un cas et revue de la littérature

PubMed Central

Oumellal, Jamal; Bekaert, Olivier; Gallas, Sophie; Leguerinel, Caroline; Palfi, Stéphane; Derkaoui, Fahd; Fatemi, Nizar El; Gana, Rachid; Elmaquili, Moulay Rachid; Elabbadi, Najia

2015-01-01

Les auteurs rapportent une observation clinique d'une fistule carotidocaverneuse survenue à la suite d'un traumatisme craniofaciale grave. Une exophtalmie unilatérale pulsatile et asymétrie des 2 sinus caverneux au scanner ont permis de suspecter le diagnostic. Une artériographie a permis de confirmer ce diagnostic, avec embolisation couronnée de succès chez ce malade, mais l’évolution est défavorable sur le plan neurologique avec apparition d'une HTIC réfractaire au traitement médical maximal. La fistule carotido-caverneuse est une complication rare mais grave pouvant engager le pronostic fonctionnel (cécité) et vital (hémorragie méningée et intracérébrale).L'artériographie et l'embolisation en un seul temps ont considérablement amélioré le pronostic. PMID:26587139

Unification and new particles at the LHC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arkani-Hamed, Nima; D’Agnolo, Raffaele Tito; Low, Matthew

Precision gauge coupling uni cation is one of the primary quantitative successes of low energy or split supersymmetry. Preserving this success puts severe restrictions on possible matter and gauge sectors that might appear at collider-accessible energies. In this study we enumerate new gauge sectors which are compatible with uni cation, consisting of horizontal gauge groups acting on vector-like matter charged under the Standard Model. Interestingly, almost all of these theories are in the supersymmetric conformal window at high energies and con ne quickly after the superpartners are decoupled. For a range of scalar masses compatible with both moderately tuned andmore » minimally split supersymmetry, the con ning dynamics happen at the multi-TeV scale, leading to a spectrum of multiple spin-0 and spin-1 resonances accessible to the LHC, with unusual quantum numbers and striking decay patterns.« less

Unification and new particles at the LHC

DOE PAGES

Arkani-Hamed, Nima; D’Agnolo, Raffaele Tito; Low, Matthew; ...

2016-11-14

Precision gauge coupling uni cation is one of the primary quantitative successes of low energy or split supersymmetry. Preserving this success puts severe restrictions on possible matter and gauge sectors that might appear at collider-accessible energies. In this study we enumerate new gauge sectors which are compatible with uni cation, consisting of horizontal gauge groups acting on vector-like matter charged under the Standard Model. Interestingly, almost all of these theories are in the supersymmetric conformal window at high energies and con ne quickly after the superpartners are decoupled. For a range of scalar masses compatible with both moderately tuned andmore » minimally split supersymmetry, the con ning dynamics happen at the multi-TeV scale, leading to a spectrum of multiple spin-0 and spin-1 resonances accessible to the LHC, with unusual quantum numbers and striking decay patterns.« less

The Cosmic Habitat for Earth-Life and the Issue of Sustainable Development

NASA Astrophysics Data System (ADS)

Piątek, Zdzisława

2017-12-01

The subjects under consideration here are the philosophical consequences arising as the cosmic dimension to ecology is taken into account. If the habitat for Earthlife is a part of the cosmic environment, then cosmology and astrophysics become a part of ecology. The human species is furthermore a participant in a vast process of cosmic evolution, with sustainable-development strategy thus defi ning the conditions for - and time needed to achieve - a technological civilisation allowing Earth-life to be evacuated to another part of the galaxy as and when the further existence of life on this planet becomes (or threatens to become) an impossibility. In the context of such a cosmic perspective, the value ascribable to our scientifi c and technological civilisation (and future versions thereof) changes, given that only this kind of civilisation offers a chance for Earth-life to persist in an extra-terrestrial environment.

Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes.

PubMed

Coffey, Lark L; Page, Brady L; Greninger, Alexander L; Herring, Belinda L; Russell, Richard C; Doggett, Stephen L; Haniotis, John; Wang, Chunlin; Deng, Xutao; Delwart, Eric L

2014-01-05

Viral metagenomics characterizes known and identifies unknown viruses based on sequence similarities to any previously sequenced viral genomes. A metagenomics approach was used to identify virus sequences in Australian mosquitoes causing cytopathic effects in inoculated mammalian cell cultures. Sequence comparisons revealed strains of Liao Ning virus (Reovirus, Seadornavirus), previously detected only in China, livestock-infecting Stretch Lagoon virus (Reovirus, Orbivirus), two novel dimarhabdoviruses, named Beaumont and North Creek viruses, and two novel orthobunyaviruses, named Murrumbidgee and Salt Ash viruses. The novel virus proteomes diverged by ≥ 50% relative to their closest previously genetically characterized viral relatives. Deep sequencing also generated genomes of Warrego and Wallal viruses, orbiviruses linked to kangaroo blindness, whose genomes had not been fully characterized. This study highlights viral metagenomics in concert with traditional arbovirus surveillance to characterize known and new arboviruses in field-collected mosquitoes. Follow-up epidemiological studies are required to determine whether the novel viruses infect humans. © 2013 Elsevier Inc. All rights reserved.

Climate Impacts on Tropospheric Ozone and Hydroxyl

NASA Technical Reports Server (NTRS)

Shindell, Drew T.; Bell, N.; Faluvegi, G.

2003-01-01

Climate change may influence tropospheric ozone and OH via several main pathways: (1) altering chemistry via temperature and humidity changes, (2) changing ozone and precursor sources via surface emissions, stratosphere-troposphere exchange, and light- ning, and (3) affecting trace gas sinks via the hydrological cycle and dry deposition. We report results from a set of coupled chemistry-climate model simulations designed to systematically study these effects. We compare the various effects with one another and with past and projected future changes in anthropogenic and natural emissions of ozone precursors. We find that white the overall impact of climate on ozone is probably small compared to emission changes, some significant seasonal and regional effects are apparent. The global effect on hydroxyl is quite large, however, similar in size to the effect of emission changes. Additionally, we show that many of the chemistry-climate links that are not yet adequately modeled are potentially important.

Polyarnye siyaniya sistemy avroral'nogo ovala kak kosmoloficheskij obraz drevnej mifologii %t The northern light of the auroral oval system as a cosmological concept of the archaic mythology

NASA Astrophysics Data System (ADS)

Alekseeva, L. M.

Since archaic epochs people attentively observe the sky. They used to associate the sky phenomena with gods, heroes, spirits, etc. People interpreted the regularities in the motion of celestial objects in terms of their mythological model of the Universe. These observations and interpretations were first steps of the archaeoastronomy. Many remarkable features are inherent in the patterns of northern lights of the auroral oval system. Their manifestations are fairly regular. Did the ancients observe and some how classify these northern light phenomena? If yes, with which mythological personages were they associated? When were studies of the polar lights initiated? The present work is an attempt to answer these questions. We shall see that the ancient people assumed the spirit-world to be situated on the North. If so, it should manifest itself in spectacular polar aurorae. The specifically northern mythic cosmology formed the basis for Slavic fairy tales (theme of the Serpent and Serpent Fighter) and folk-beliefs. Other inhabitants of snowy latitudes should also manifest similar views. Studying the mythological reflections of typical auroral phenomena, it is possible to trace up long-standing ideological trends from the late glaciation epoch to the present time. Our results can help geophysicists in studying paleoauroral phenomena.

Acidic-basic properties of three alanine-based peptides containing acidic and basic side chains: comparison between theory and experiment.

PubMed

Makowska, Joanna; Bagińska, Katarzyna; Liwo, Adam; Chmurzyński, Lech; Scheraga, Harold A

2008-01-01

The purpose of this work was to evaluate the effect of the nature of the ionizable end groups, and the solvent, on their acid-base properties in alanine-based peptides. Hence, the acid-base properties of three alanine-based peptides: Ac-KK-(A)(7)-KK-NH(2) (KAK), Ac-OO-(A)(7)-DD-NH(2) (OAD), Ac-KK-(A)(7)-EE-NH(2) (KAE), where A, D, E, K, and O denote alanine, aspartic acid, glutamic acid, lysine, and ornithine, respectively, were determined in water and in methanol by potentiometry. With the availability of these data, the ability of two theoretical methods to simulate pH-metric titration of those peptides was assessed: (i) the electrostatically driven Monte Carlo method with the ECEPP/3 force field and the Poisson-Boltzmann approach to compute solvation energy (EDMC/PB/pH), and (ii) the molecular dynamics method with the AMBER force field and the Generalized Born model (MD/GB/pH). For OAD and KAE, pK(a1) and pK(a2) correspond to the acidic side chains. For all three compounds in both solvents, the pK(a1) value is remarkably lower than the pK(a) of a compound modeling the respective isolated side chain, which can be explained by the influence of the electrostatic field from positively charged ornithine or lysine side chains. The experimental titration curves are reproduced well by the MD/GB/pH approach, the agreement being better if restraints derived from NMR measurements are incorporated in the conformational search. Poorer agreement is achieved by the EDMC/PB/pH method.

Comprehensive transcriptome analysis reveals accelerated genic evolution in a Tibet fish, Gymnodiptychus pachycheilus.

PubMed

Yang, Liandong; Wang, Ying; Zhang, Zhaolei; He, Shunping

2014-12-26

Elucidating the genetic mechanisms of organismal adaptation to the Tibetan Plateau at a genomic scale can provide insights into the process of adaptive evolution. Many highland species have been investigated and various candidate genes that may be responsible for highland adaptation have been identified. However, we know little about the genomic basis of adaptation to Tibet in fishes. Here, we performed transcriptome sequencing of a schizothoracine fish (Gymnodiptychus pachycheilus) and used it to identify potential genetic mechanisms of highland adaptation. We obtained totally 66,105 assembled unigenes, of which 7,232 were assigned as putative one-to-one orthologs in zebrafish. Comparative gene annotations from several species indicated that at least 350 genes lost and 41 gained since the divergence between G. pachycheilus and zebrafish. An analysis of 6,324 orthologs among zebrafish, fugu, medaka, and spotted gar identified consistent evidence for genome-wide accelerated evolution in G. pachycheilus and only the terminal branch of G. pachycheilus had an elevated Ka/Ks ratio than the ancestral branch. Many functional categories related to hypoxia and energy metabolism exhibited rapid evolution in G. pachycheilus relative to zebrafish. Genes showing signature of rapid evolution and positive selection in the G. pachycheilus lineage were also enriched in functions associated with energy metabolism and hypoxia. The first genomic resources for fish in the Tibetan Plateau and evolutionary analyses provided some novel insights into highland adaptation in fishes and served as a foundation for future studies aiming to identify candidate genes underlying the genetic bases of adaptation to Tibet in fishes. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

A Continuous Long-Term Record of Magnetic-Storm Occurrence and Intensity

NASA Astrophysics Data System (ADS)

Love, J. J.

2007-05-01

Hourly magnetometer data have been produced by ground-based magnetic observatories for over a century. These data are used for a wide variety of applications, including many for space physics. In particular, hourly data from a longitudinal necklace of mid-latitude observatories can be used to construct a time series recording the storm-time disturbance index Dst, one of the most useful scalar summaries of magnetic storm intensity which is generally interpreted in terms of an equivalent equatorial magnetospheric ring current. Dst has been routinely calculated in a temporally piece-wise fashion since the IGY using a subset of the available observatories: four or five stations, typically including Honolulu (HON), San Juan (SJG), Kakioka Japan (KAK), Hermanus South Africa (HER), and Alibag India (ABG). In this presentation we discuss a single continuous Dst time series made using a denser and more uniform distribution of observatories than that which is standard: including, additionally, Watheroo Australia (WAT), Apia Samoa (API), and Vassouras Brazil (VSS). Starting first with the data from each individual observatory, we subtract the geomagnetic secular variation, caused primarily by the core dynamo, and the solar-quiet (Sq) variation, caused primarily by the ionospheric dynamo. The latter requires careful spectral analysis, and those intermediate results are, themselves, of scientific interest. Following this, we combine the disturbance residuals from each station to form the continuous Dst time series. Statistics deduced from this model allow us to quantify the likelihood of storm occurrence and intensity, both of which are modulated in time by the solar cycle. This analysis is accomplished using a 50 year Dst time series. The prospects for constructing a longer continuous Dst time series are discussed.

[Relationship between leaf anatomical structure and heat resistance of 15 Rhododendron cultivars].

PubMed

Shen, Hui Fei; Zhao, Bing; Xu, Jing Jing

2016-12-01

In this study, 17 anatomical structure indexes of 15 Rhododendron cultivars were mea-sured by scanning electron microscope (SEM). Leaf anatomical structure indexes were screened via coefficient of variation, analysis of correlation and hierarchical cluster analysis, and comprehensive evaluation on heat resistance for each cultivar was conducted by the subordinate function. The results showed that the leaves of Rhododendron cultivars were typical bifacial leaf and the epidermal anticlinal walls showed slightly sinuate. The stomata only distributed in the lower epidermis and the shape was ruleless. The anatomical structure indexes all reached a significant level difference among 15 cultivars (P<0.01), except for lower epidermis thickness (P<0.05). Thickness of lamina corneum, stomatal density, stomatal width, the thickness palisade tissue and looseness of leaf spongy tissue were the main factors related to the hardness, while other indexes, such as stomatal length, stoma aperture, stomatal opening, length and thickness of upper epidermis, length and thickness of lower epidermis, thickness of spongy tissue, the ratio of the palisade tissue to spongy tissue, tightness of leaf palisade tissue, leaf thickness and media thickness didn't show much effect on heat resistance. There were some differences among 15 cultivars in heat resistance, and the order was Rhododendron 'Song Jiang Da Tao Hong' > Rhododendron 'Zhuang Yuan Hong' > Rhododendron 'Lv Se Guang Hui' > Rhododendron 'Fen Zhen Zhu' > Rhododendron 'Wai Guo Hong' > Rhododendron 'Lan Yin' > Rhododendron 'Bi Zhi' >Rhododendron 'Da He Zhi Chun' > Rhododendron 'Guo Qi Hong' > Rhododendron 'Yu Ling Long' > Rhododendron 'Hong Shan Hu' > Rhododendron 'Ning Bo Hong' > Rhododendron 'Tao Ban Zhu Sha' > Rhododendron 'Ai Ding Bao' > Rhododendron 'Liu Qiu Hong'. According to the heat hardiness, the cultivars could be divided into 4 groups: R. 'Song Jiang Da Tao Hong', R. 'Zhuang Yuan Hong' and R. 'Lv Se Guang Hui' with high heat

Development and application of a generic CFD toolkit covering the heat flows in combined solid-liquid systems with emphasis on the thermal design of HiLumi superconducting magnets

NASA Astrophysics Data System (ADS)

Bozza, Gennaro; Malecha, Ziemowit M.; Van Weelderen, Rob

2016-12-01

The main objective of this work is to develop a robust multi-region numerical toolkit for the modeling of heat flows in combined solid-liquid systems. Specifically heat transfer in complex cryogenic system geometries involving super-fluid helium. The incentive originates from the need to support the design of superconductive magnets in the framework of the HiLumi-LHC project (Brüning and Rossi, 2015) [1]. The intent is, instead of solving heat flows in restricted domains, to be able to model a full magnet section in one go including all relevant construction details as accurately as possible. The toolkit was applied to the so-called MQXF quadrupole magnet design. Parametrisation studies were used to find a compromise in thermal design and electro-mechanical construction constraints. The cooling performance is evaluated in terms of temperature margin of the magnets under full steady state heat load conditions and in terms of maximal sustainable load. We also present transient response to pulse heat loads of varying duration and power and the system response to time-varying cold source temperatures.

Anticholinesterase activity of potential therapeutic 5-(1,3,3-trimethylindolinyl) carbamates. (Reannouncement with new availability information)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lieske, C.N.; Gepp, R.T.; Clark, J.H.

1991-12-31

Six N-alkyl and N-aryl 5-(1,3,3-trimethylindolinyl) carbamates were synthesized and studied for their structure-activity relationships in inhibiting eel acetylcholinesterase (AChE). The carbamates were 5-(1,3,3,trimethylindolinyl) N,N-dimethylcarbamate (Cui Xing Ning) (I), 5-(1,3,3-trimethylindolinyl) N-methylcarbamate (II), 5-(1,3,3-trimethylindolinyl) N-ethylcarbamate (III), 5-(1,3,3-trimethylindolinyl) N,Ndiethylcarbamate (IV), 5-(1,3,3-trimethylindolinyl) N-heptylcarbamate (V), and 5-(1,3,3-trimethylindolinyl) N-(3-cholorophenyl)carbamate (VI). The inhibition studies were carried out at 25.0 deg C at pH 7.60. The rank order of the ki values for eel AChE inhibition is 11 > V > I > Ill > Vi > IV. Compound 11 has a greater affinity for the enzyme than any irreversible inhibitor cited in the literature (Kd = 7.14more » x 10(-8)M). Our findings should aid in the application of these carbamates (1) for counteracting the cholinergic problems associated with various diseases,and (2) for developing potential pretreatment compounds for organophosphate poisoning. Acetylcholinesterase, carbamates, inhibition« less

Influence of nuclear basic data on the calculation of production cross sections of superheavy nuclei

NASA Astrophysics Data System (ADS)

Bao, X. J.; Gao, Y.; Li, J. Q.; Zhang, H. F.

2015-07-01

The center of the predicted island of stability of superheavy nuclei (SHN) has not yet been observed experimentally. Many theories are being developed to understand the synthesizing mechanism of superheavy nuclei. However, all of them have to use some basic nuclear data. Three data tables, FRDM1995 [P. Möller et al., At. Data Nucl. Data Tables 59, 185 (1995), 10.1006/adnd.1995.1002], KTUY2005 [H. Koura et al., Prog. Theor. Phys. 113, 305 (2005), 10.1143/PTP.113.305], and WS2010 [Ning Wang et al., Phys. Rev. C 82, 044304 (2010), 10.1103/PhysRevC.82.044304], are used to investigate the SHN production. Based on the dinuclear system concept, the evaporation residue cross sections of SHN for Z =112-118 are calculated for the 48Ca -induced hot fusion reactions. It turns out that unlike the predictions made with the KTUY2005 and WS2010 data, the magic numbers Z =114 and N =184 predicted with the FRDM1995 data do not contradict the experimental data obtained so far.

[Evidence of facial palsy and facial malformations in pottery from Peruvian Moche and Lambayeque pre-Columbian cultures].

PubMed

Carod-Artal, F J; Vázquez Cabrera, C B

2006-01-01

Moche (100-700 AD) and Lambayeque-Sicán (750-1100 AD) are pre-Columbian cultures from Regional States Period, developed in Northern Peru. Information about daily life, religion and medicine has been obtained through the study of Moche ceramics found in lords and priests tombs, pyramids and temples. To analyze archeological evidences of Moche Medicine and neurological diseases through ceramics. Representations of diseases in Moche and Lambayeque iconography and Moche pottery collections exposed in Casinelli museum from Trujillo, and Brüning National Archeological museum from Lambayeque, Peru, were studied. The most representative cases were analyzed and photographed, previous authorization from authorities and curators of the museums. The following pathologies were observed in ceramic collections: peripheral facial palsy, facial malformations such as cleft lip, hemifacial spasm, legs and arm amputations, scoliosis and Siamese patients. Male and females Moche doctors were also observed in the ceramics in ritual ceremonies treating patients. The main pathologies observed in Moche and Lambayeque pottery are facial palsy and cleft lip. These are one of the earliest registries of these pathologies in pre-Columbian cultures in South-America.

New insights on the evolution of Leafy cotyledon1 (LEC1) type genes in vascular plants.

PubMed

Cagliari, Alexandro; Turchetto-Zolet, Andreia Carina; Korbes, Ana Paula; Maraschin, Felipe Dos Santos; Margis, Rogerio; Margis-Pinheiro, Marcia

2014-01-01

NF-Y is a conserved oligomeric transcription factor found in all eukaryotes. In plants, this regulator evolved with a broad diversification of the genes coding for its three subunits (NF-YA, NF-YB and NF-YC). The NF-YB members can be divided into Leafy Cotyledon1 (LEC1) and non-LEC1 types. Here we presented a comparative genomic study using phylogenetic analyses to validate an evolutionary model for the origin of LEC-type genes in plants and their emergence from non-LEC1-type genes. We identified LEC1-type members in all vascular plant genomes, but not in amoebozoa, algae, fungi, metazoa and non-vascular plant representatives, which present exclusively non-LEC1-type genes as constituents of their NF-YB subunits. The non-synonymous to synonymous nucleotide substitution rates (Ka/Ks) between LEC1 and non-LEC1-type genes indicate the presence of positive selection acting on LEC1-type members to the fixation of LEC1-specific amino acid residues. The phylogenetic analyses demonstrated that plant LEC1-type genes are evolutionary divergent from the non-LEC1-type genes of plants, fungi, amoebozoa, algae and animals. Our results point to a scenario in which LEC1-type genes have originated in vascular plants after gene expansion in plants. We suggest that processes of neofunctionalization and/or subfunctionalization were responsible for the emergence of a versatile role for LEC1-type genes in vascular plants, especially in seed plants. LEC1-type genes besides being phylogenetic divergent also present different expression profile when compared with non-LEC1-type genes. Altogether, our data provide new insights about the LEC1 and non-LEC1 evolutionary relationship during the vascular plant evolution. Copyright © 2014 Elsevier Inc. All rights reserved.

Function of the evolutionarily conserved plant methionine-S-sulfoxide reductase without the catalytic residue.

PubMed

Le, Dung Tien; Nguyen, Kim-Lien; Chu, Ha Duc; Vu, Nam Tuan; Pham, Thu Thi Ly; Tran, Lam-Son Phan

2018-05-28

In plants, two types of methionine sulfoxide reductase (MSR) exist, namely methionine-S-sulfoxide reductase (MSRA) and methionine-R-sulfoxide reductase (MSRB). These enzymes catalyze the reduction of methionine sulfoxides (MetO) back to methionine (Met) by a catalytic cysteine (Cys) and one or two resolving Cys residues. Interestingly, a group of MSRA encoded by plant genomes does not have a catalytic residue. We asked that if this group of MSRA did not have any function (as fitness), why it was not lost during the evolutionary process. To challenge this question, we analyzed the gene family encoding MSRA in soybean (GmMSRAs). We found seven genes encoding GmMSRAs, which included three segmental duplicated pairs. Among them, a pair of duplicated genes, namely GmMSRA1 and GmMSRA6, was without a catalytic Cys residue. Pseudogenes were ruled out as their transcripts were detected in various tissues and their Ka/Ks ratio indicated a negative selection pressure. In vivo analysis in Δ3MSR yeast strain indicated that the GmMSRA6 did not have activity toward MetO, contrasting to GmMSRA3 which had catalytic Cys and had activity. When exposed to H 2 O 2 -induced oxidative stress, GmMSRA6 did not confer any protection to the Δ3MSR yeast strain. Overexpression of GmMSRA6 in Arabidopsis thaliana did not alter the plant's phenotype under physiological conditions. However, the transgenic plants exhibited slightly higher sensitivity toward salinity-induced stress. Taken together, this data suggested that the plant MSRAs without the catalytic Cys are not enzymatically active and their existence may be explained by a role in regulating plant MSR activity via dominant-negative substrate competition mechanism.

Analysis of S-RNase alleles of almond (Prunus dulcis): characterization of new sequences, resolution of synonyms and evidence of intragenic recombination.

PubMed

Ortega, Encarnación; Bosković, Radovan I; Sargent, Daniel J; Tobutt, Kenneth R

2006-11-01

Cross-compatibility relationships in almond are controlled by a gametophytically expressed incompatibility system partly mediated by stylar RNases, of which 29 have been reported. To resolve possible synonyms and to provide data for phylogenetic analysis, 21 almond S-RNase alleles were cloned and sequenced from SP (signal peptide region) or C1 (first conserved region) to C5, except for the S29 allele, which could be cloned only from SP to C1. Nineteen sequences (S4, S6, S11-S22, S25-S29)) were potentially new whereas S10 and S24 had previously been published but with different labels. The sequences for S16 and S17 were identical to that for S1, published previously; likewise, S15 was identical to S5. In addition, S4 and S20 were identical, as were S13 and S19. A revised version of the standard table of almond incompatibility genotypes is presented. Several alleles had AT or GA tandem repeats in their introns. Sequences of the 23 distinct newly cloned or already published alleles were aligned. Sliding windows analysis of Ka/Ks identified regions where positive selection may operate; in contrast to the Maloideae, most of the region from the beginning of C3 to the beginning of RC4 appeared not to be under positive selection. Phylogenetic analysis indicated four pairs of alleles had "bootstrap" support > 80%: S5/S10, S4/S8, S11/S24, and S3/S6. Various motifs up to 19 residues long occurred in at least two alleles, and their distributions were consistent with intragenic recombination, as were separate phylogenetic analyses of the 5' and 3' sections. Sequence comparison of phylogenetically related alleles indicated the significance of the region between RC4 and C5 in defining specificity.

Interspecific variability of class II hydrophobin GEO1 in the genus Geosmithia.

PubMed

Frascella, Arcangela; Bettini, Priscilla P; Kolařík, Miroslav; Comparini, Cecilia; Pazzagli, Luigia; Luti, Simone; Scala, Felice; Scala, Aniello

2014-11-01

The genus Geosmithia Pitt (Ascomycota: Hypocreales) comprises cosmopolite fungi living in the galleries built by phloeophagous insects. Following the characterization in Geosmithia species 5 of the class II hydrophobin GEO1 and of the corresponding gene, the presence of the geo1 gene was investigated in 26 strains derived from different host plants and geographic locations and representing the whole phylogenetic diversity of the genus. The geo1 gene was detected in all the species tested where it maintained the general organization shown in Geosmithia species 5, comprising three exons and two introns. Size variations were found in both introns and in the first exon, the latter being due to the presence of an intragenic tandem repeat sequence corresponding to a stretch of glycine residues in the deduced proteins. At the amino acid level the deduced proteins had 44.6 % identity and no major differences in the biochemical parameters (pI, GRAVY index, hydropathy plots) were found. GEO1 release in the fungal culture medium was also assessed by turbidimetric assay and SDS-PAGE, and showed high variability between species. The phylogeny based on the geo1 sequences did not correspond to that generated from a neutral marker (ITS rDNA), suggesting that sequence similarities could be influenced by other factors than phylogenetic relatedness, such as the intimacy of the symbiosis with insect vectors. The hypothesis of a strong selection pressure on the geo1 gene was sustained by the low values (<1) of non synonymous to synonymous nucleotide substitutions ratios (Ka/Ks), which suggest that purifying selection might act on this gene. These results are compatible with either a birth-and-death evolution scenario or horizontal transfer of the gene between Geosmithia species. Copyright © 2014 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Identification and characterization of insect-specific proteins by genome data analysis

PubMed Central

Zhang, Guojie; Wang, Hongsheng; Shi, Junjie; Wang, Xiaoling; Zheng, Hongkun; Wong, Gane Ka-Shu; Clark, Terry; Wang, Wen; Wang, Jun; Kang, Le

2007-01-01

Background Insects constitute the vast majority of known species with their importance including biodiversity, agricultural, and human health concerns. It is likely that the successful adaptation of the Insecta clade depends on specific components in its proteome that give rise to specialized features. However, proteome determination is an intensive undertaking. Here we present results from a computational method that uses genome analysis to characterize insect and eukaryote proteomes as an approximation complementary to experimental approaches. Results Homologs in common to Drosophila melanogaster, Anopheles gambiae, Bombyx mori, Tribolium castaneum, and Apis mellifera were compared to the complete genomes of three non-insect eukaryotes (opisthokonts) Homo sapiens, Caenorhabditis elegans and Saccharomyces cerevisiae. This operation yielded 154 groups of orthologous proteins in Drosophila to be insect-specific homologs; 466 groups were determined to be common to eukaryotes (represented by three opisthokonts). ESTs from the hemimetabolous insect Locust migratoria were also considered in order to approximate their corresponding genes in the insect-specific homologs. Stress and stimulus response proteins were found to constitute a higher fraction in the insect-specific homologs than in the homologs common to eukaryotes. Conclusion The significant representation of stress response and stimulus response proteins in proteins determined to be insect-specific, along with specific cuticle and pheromone/odorant binding proteins, suggest that communication and adaptation to environments may distinguish insect evolution relative to other eukaryotes. The tendency for low Ka/Ks ratios in the insect-specific protein set suggests purifying selection pressure. The generally larger number of paralogs in the insect-specific proteins may indicate adaptation to environment changes. Instances in our insect-specific protein set have been arrived at through experiments reported in the

Selective Loss of Cysteine Residues and Disulphide Bonds in a Potato Proteinase Inhibitor II Family

PubMed Central

Li, Xiu-Qing; Zhang, Tieling; Donnelly, Danielle

2011-01-01

Disulphide bonds between cysteine residues in proteins play a key role in protein folding, stability, and function. Loss of a disulphide bond is often associated with functional differentiation of the protein. The evolution of disulphide bonds is still actively debated; analysis of naturally occurring variants can promote understanding of the protein evolutionary process. One of the disulphide bond-containing protein families is the potato proteinase inhibitor II (PI-II, or Pin2, for short) superfamily, which is found in most solanaceous plants and participates in plant development, stress response, and defence. Each PI-II domain contains eight cysteine residues (8C), and two similar PI-II domains form a functional protein that has eight disulphide bonds and two non-identical reaction centres. It is still unclear which patterns and processes affect cysteine residue loss in PI-II. Through cDNA sequencing and data mining, we found six natural variants missing cysteine residues involved in one or two disulphide bonds at the first reaction centre. We named these variants Pi7C and Pi6C for the proteins missing one or two pairs of cysteine residues, respectively. This PI-II-7C/6C family was found exclusively in potato. The missing cysteine residues were in bonding pairs but distant from one another at the nucleotide/protein sequence level. The non-synonymous/synonymous substitution (Ka/Ks) ratio analysis suggested a positive evolutionary gene selection for Pi6C and various Pi7C. The selective deletion of the first reaction centre cysteine residues that are structure-level-paired but sequence-level-distant in PI-II illustrates the flexibility of PI-II domains and suggests the functionality of their transient gene versions during evolution. PMID:21494600

The planetary biology of cytochrome P450 aromatases.

PubMed

Gaucher, Eric A; Graddy, Logan G; Li, Tang; Simmen, Rosalia C M; Simmen, Frank A; Schreiber, David R; Liberles, David A; Janis, Christine M; Benner, Steven A

2004-08-17

Joining a model for the molecular evolution of a protein family to the paleontological and geological records (geobiology), and then to the chemical structures of substrates, products, and protein folds, is emerging as a broad strategy for generating hypotheses concerning function in a post-genomic world. This strategy expands systems biology to a planetary context, necessary for a notion of fitness to underlie (as it must) any discussion of function within a biomolecular system. Here, we report an example of such an expansion, where tools from planetary biology were used to analyze three genes from the pig Sus scrofa that encode cytochrome P450 aromatases-enzymes that convert androgens into estrogens. The evolutionary history of the vertebrate aromatase gene family was reconstructed. Transition redundant exchange silent substitution metrics were used to interpolate dates for the divergence of family members, the paleontological record was consulted to identify changes in physiology that correlated in time with the change in molecular behavior, and new aromatase sequences from peccary were obtained. Metrics that detect changing function in proteins were then applied, including KA/KS values and those that exploit structural biology. These identified specific amino acid replacements that were associated with changing substrate and product specificity during the time of presumed adaptive change. The combined analysis suggests that aromatase paralogs arose in pigs as a result of selection for Suoidea with larger litters than their ancestors, and permitted the Suoidea to survive the global climatic trauma that began in the Eocene. This combination of bioinformatics analysis, molecular evolution, paleontology, cladistics, global climatology, structural biology, and organic chemistry serves as a paradigm in planetary biology. As the geological, paleontological, and genomic records improve, this approach should become widely useful to make systems biology statements about

The planetary biology of cytochrome P450 aromatases

PubMed Central

Gaucher, Eric A; Graddy, Logan G; Li, Tang; Simmen, Rosalia CM; Simmen, Frank A; Schreiber, David R; Liberles, David A; Janis, Christine M; Benner, Steven A

2004-01-01

Background Joining a model for the molecular evolution of a protein family to the paleontological and geological records (geobiology), and then to the chemical structures of substrates, products, and protein folds, is emerging as a broad strategy for generating hypotheses concerning function in a post-genomic world. This strategy expands systems biology to a planetary context, necessary for a notion of fitness to underlie (as it must) any discussion of function within a biomolecular system. Results Here, we report an example of such an expansion, where tools from planetary biology were used to analyze three genes from the pig Sus scrofa that encode cytochrome P450 aromatases–enzymes that convert androgens into estrogens. The evolutionary history of the vertebrate aromatase gene family was reconstructed. Transition redundant exchange silent substitution metrics were used to interpolate dates for the divergence of family members, the paleontological record was consulted to identify changes in physiology that correlated in time with the change in molecular behavior, and new aromatase sequences from peccary were obtained. Metrics that detect changing function in proteins were then applied, including KA/KS values and those that exploit structural biology. These identified specific amino acid replacements that were associated with changing substrate and product specificity during the time of presumed adaptive change. The combined analysis suggests that aromatase paralogs arose in pigs as a result of selection for Suoidea with larger litters than their ancestors, and permitted the Suoidea to survive the global climatic trauma that began in the Eocene. Conclusions This combination of bioinformatics analysis, molecular evolution, paleontology, cladistics, global climatology, structural biology, and organic chemistry serves as a paradigm in planetary biology. As the geological, paleontological, and genomic records improve, this approach should become widely useful to make

Genomic Survey, Characterization, and Expression Profile Analysis of the SBP Genes in Pineapple (Ananas comosus L.).

PubMed

Ali, Hina; Liu, Yanhui; Azam, Syed Muhammad; Rahman, Zia Ur; Priyadarshani, S V G N; Li, Weimin; Huang, Xinyu; Hu, Bingyan; Xiong, Junjie; Ali, Umair; Qin, Yuan

2017-01-01

Gene expression is regulated by transcription factors, which play many significant developmental processes. SQUAMOSA promoter-binding proteins (SBP) perform a variety of regulatory functions in leaf, flower, and fruit development, plant architecture, and sporogenesis. 16 SBP genes were identified in pineapple and were divided into four groups on basis of phylogenetic analysis. Five paralogs in pineapple for SBP genes were identified with Ka/Ks ratio varied from 0.20 for AcSBP14 and AcSBP15 to 0.36 for AcSBP6 and AcSBP16 , respectively. 16 SBP genes were located on 12 chromosomes out of 25 pineapple chromosomes with highly conserved protein sequence structures. The isoionic points of SBP ranged from 6.05 to 9.57, while molecular weight varied from 22.7 to 121.9 kD. Expression profiles of SBP genes revealed that AcSBP7 and AcSBP15 (leaf), AcSBP13 , AcSBP12 , AcSBP8 , AcSBP16 , AcSBP9 , and AcSBP11 (sepal), AcSBP6 , AcSBP4 , and AcSBP10 (stamen), AcSBP14 , AcSBP1 , and AcSBP5 (fruit) while the rest of genes showed low expression in studied tissues. Four genes, that is, AcSBP11 , AcSBP6 , AcSBP4 , and AcSBP12 , were highly expressed at 4°C, while AcSBP16 were upregulated at 45°C. RNA-Seq was validated through qRT-PCR for some genes. Salt stress-induced expression of two genes, that is, AcSBP7 and AcSBP14 , while in drought stress, AcSBP12 and AcSBP15 were highly expressed. Our study lays a foundation for further gene function and expression studies of SBP genes in pineapple.

Genomic Survey, Characterization, and Expression Profile Analysis of the SBP Genes in Pineapple (Ananas comosus L.)

PubMed Central

Ali, Hina; Liu, Yanhui; Azam, Syed Muhammad; Rahman, Zia ur; Priyadarshani, S. V. G. N.; Li, Weimin; Huang, Xinyu; Hu, Bingyan; Xiong, Junjie; Ali, Umair

2017-01-01

Gene expression is regulated by transcription factors, which play many significant developmental processes. SQUAMOSA promoter-binding proteins (SBP) perform a variety of regulatory functions in leaf, flower, and fruit development, plant architecture, and sporogenesis. 16 SBP genes were identified in pineapple and were divided into four groups on basis of phylogenetic analysis. Five paralogs in pineapple for SBP genes were identified with Ka/Ks ratio varied from 0.20 for AcSBP14 and AcSBP15 to 0.36 for AcSBP6 and AcSBP16, respectively. 16 SBP genes were located on 12 chromosomes out of 25 pineapple chromosomes with highly conserved protein sequence structures. The isoionic points of SBP ranged from 6.05 to 9.57, while molecular weight varied from 22.7 to 121.9 kD. Expression profiles of SBP genes revealed that AcSBP7 and AcSBP15 (leaf), AcSBP13, AcSBP12, AcSBP8, AcSBP16, AcSBP9, and AcSBP11 (sepal), AcSBP6, AcSBP4, and AcSBP10 (stamen), AcSBP14, AcSBP1, and AcSBP5 (fruit) while the rest of genes showed low expression in studied tissues. Four genes, that is, AcSBP11, AcSBP6, AcSBP4, and AcSBP12, were highly expressed at 4°C, while AcSBP16 were upregulated at 45°C. RNA-Seq was validated through qRT-PCR for some genes. Salt stress-induced expression of two genes, that is, AcSBP7 and AcSBP14, while in drought stress, AcSBP12 and AcSBP15 were highly expressed. Our study lays a foundation for further gene function and expression studies of SBP genes in pineapple. PMID:29104869

Genome-wide analysis of soybean HD-Zip gene family and expression profiling under salinity and drought treatments.

PubMed

Chen, Xue; Chen, Zhu; Zhao, Hualin; Zhao, Yang; Cheng, Beijiu; Xiang, Yan

2014-01-01

Homeodomain-leucine zipper (HD-Zip) proteins, a group of homeobox transcription factors, participate in various aspects of normal plant growth and developmental processes as well as environmental responses. To date, no overall analysis or expression profiling of the HD-Zip gene family in soybean (Glycine max) has been reported. An investigation of the soybean genome revealed 88 putative HD-Zip genes. These genes were classified into four subfamilies, I to IV, based on phylogenetic analysis. In each subfamily, the constituent parts of gene structure and motif were relatively conserved. A total of 87 out of 88 genes were distributed unequally on 20 chromosomes with 36 segmental duplication events, indicating that segmental duplication is important for the expansion of the HD-Zip family. Analysis of the Ka/Ks ratios showed that the duplicated genes of the HD-Zip family basically underwent purifying selection with restrictive functional divergence after the duplication events. Analysis of expression profiles showed that 80 genes differentially expressed across 14 tissues, and 59 HD-Zip genes are differentially expressed under salinity and drought stress, with 20 paralogous pairs showing nearly identical expression patterns and three paralogous pairs diversifying significantly under drought stress. Quantitative real-time RT-PCR (qRT-PCR) analysis of six paralogous pairs of 12 selected soybean HD-Zip genes under both drought and salinity stress confirmed their stress-inducible expression patterns. This study presents a thorough overview of the soybean HD-Zip gene family and provides a new perspective on the evolution of this gene family. The results indicate that HD-Zip family genes may be involved in many plant responses to stress conditions. Additionally, this study provides a solid foundation for uncovering the biological roles of HD-Zip genes in soybean growth and development.

Genome-Wide Analysis of Soybean HD-Zip Gene Family and Expression Profiling under Salinity and Drought Treatments

PubMed Central

Chen, Xue; Chen, Zhu; Zhao, Hualin; Zhao, Yang; Cheng, Beijiu; Xiang, Yan

2014-01-01

Background Homeodomain-leucine zipper (HD-Zip) proteins, a group of homeobox transcription factors, participate in various aspects of normal plant growth and developmental processes as well as environmental responses. To date, no overall analysis or expression profiling of the HD-Zip gene family in soybean (Glycine max) has been reported. Methods and Findings An investigation of the soybean genome revealed 88 putative HD-Zip genes. These genes were classified into four subfamilies, I to IV, based on phylogenetic analysis. In each subfamily, the constituent parts of gene structure and motif were relatively conserved. A total of 87 out of 88 genes were distributed unequally on 20 chromosomes with 36 segmental duplication events, indicating that segmental duplication is important for the expansion of the HD-Zip family. Analysis of the Ka/Ks ratios showed that the duplicated genes of the HD-Zip family basically underwent purifying selection with restrictive functional divergence after the duplication events. Analysis of expression profiles showed that 80 genes differentially expressed across 14 tissues, and 59 HD-Zip genes are differentially expressed under salinity and drought stress, with 20 paralogous pairs showing nearly identical expression patterns and three paralogous pairs diversifying significantly under drought stress. Quantitative real-time RT-PCR (qRT-PCR) analysis of six paralogous pairs of 12 selected soybean HD-Zip genes under both drought and salinity stress confirmed their stress-inducible expression patterns. Conclusions This study presents a thorough overview of the soybean HD-Zip gene family and provides a new perspective on the evolution of this gene family. The results indicate that HD-Zip family genes may be involved in many plant responses to stress conditions. Additionally, this study provides a solid foundation for uncovering the biological roles of HD-Zip genes in soybean growth and development. PMID:24498296

A novel dromedary camel enterovirus in the family Picornaviridae from dromedaries in the Middle East.

PubMed

Woo, Patrick C Y; Lau, Susanna K P; Li, Tong; Jose, Shanty; Yip, Cyril C Y; Huang, Yi; Wong, Emily Y M; Fan, Rachel Y Y; Cai, Jian-Piao; Wernery, Ulrich; Yuen, Kwok-Yung

2015-07-01

The recent emergence of Middle East respiratory syndrome coronavirus from the Middle East and the discovery of the virus from dromedary camels have boosted interest in the search for novel viruses in dromedaries. Whilst picornaviruses are known to infect various animals, their existence in dromedaries was unknown. We describe the discovery of a novel picornavirus, dromedary camel enterovirus (DcEV), from dromedaries in Dubai. Among 215 dromedaries, DcEV was detected in faecal samples of four (1.9 %) dromedaries [one (0.5 %) adult dromedary and three (25 %) dromedary calves] by reverse transcription PCR. Analysis of two DcEV genomes showed that DcEV was clustered with other species of the genus Enterovirus and was most closely related to and possessed highest amino acid identities to the species Enterovirus E and Enterovirus F found in cattle. The G+C content of DcEV was 45 mol%, which differed from that of Enterovirus E and Enterovirus F (49-50 mol%) by 4-5 %. Similar to other members of the genus Enterovirus, the 5' UTR of DcEV possessed a putative type I internal ribosome entry site. The low ratios of the number of nonsynonymous substitutions per non-synonymous site to the number of synonymous substitutions per synonymous site (Ka/Ks) of various coding regions suggested that dromedaries are the natural reservoir in which DcEV has been stably evolving. These results suggest that DcEV is a novel species of the genus Enterovirus in the family Picornaviridae. Western blot analysis using recombinant DcEV VP1 polypeptide showed a high seroprevalence of 52 % among serum samples from 172 dromedaries for IgG, concurring with its much higher infection rates in dromedary calves than in adults. Further studies are important to understand the pathogenicity, epidemiology and genetic evolution of DcEV in this unique group of animals.

Comparative genomic analysis of the Lipase3 gene family in five plant species reveals distinct evolutionary origins.

PubMed

Wang, Dan; Zhang, Lin; Hu, JunFeng; Gao, Dianshuai; Liu, Xin; Sha, Yan

2018-04-01

Lipases are physiologically important and ubiquitous enzymes that share a conserved domain and are classified into eight different families based on their amino acid sequences and fundamental biological properties. The Lipase3 family of lipases was reported to possess a canonical fold typical of α/β hydrolases and a typical catalytic triad, suggesting a distinct evolutionary origin for this family. Genes in the Lipase3 family do not have the same functions, but maintain the conserved Lipase3 domain. There have been extensive studies of Lipase3 structures and functions, but little is known about their evolutionary histories. In this study, all lipases within five plant species were identified, and their phylogenetic relationships and genetic properties were analyzed and used to group them into distinct evolutionary families. Each identified lipase family contained at least one dicot and monocot Lipase3 protein, indicating that the gene family was established before the split of dicots and monocots. Similar intron/exon numbers and predicted protein sequence lengths were found within individual groups. Twenty-four tandem Lipase3 gene duplications were identified, implying that the distinctive function of Lipase3 genes appears to be a consequence of translocation and neofunctionalization after gene duplication. The functional genes EDS1, PAD4, and SAG101 that are reportedly involved in pathogen response were all located in the same group. The nucleotide diversity (Dxy) and the ratio of nonsynonymous to synonymous nucleotide substitutions rates (Ka/Ks) of the three genes were significantly greater than the average across the genomes. We further observed evidence for selection maintaining diversity on three genes in the Toll-Interleukin-1 receptor type of nucleotide binding/leucine-rich repeat immune receptor (TIR-NBS LRR) immunity-response signaling pathway, indicating that they could be vulnerable to pathogen effectors.

Kak Amerikantsy iskali vetra v pole, a nashli radiatsionnyj poyas i kak Russkie iskali radiatsionnyj poyas, a nashli solnechnyj veter Chast' I %t How Americans looked for "a wind in a field" but found a radiation belt, and how Russians looked for a radiation belt but found a solar wind or physical experiments on the first artificial Earth's satellites and a discovery of radiation belts

NASA Astrophysics Data System (ADS)

Zavidonov, I. V.

The history of the most important scientific discovery of the early space era - the discovery of the inner and outer radiation belts of the Earth in 1958 is reconstructed. The paper uses archival records to bring to light the relative contributions of Soviet and American reseachers to the complex process of discovery. It also shows how misuses of science in mass-media political propaganda led to misrepresentations of the real historical portrayal of early space research.

PRECISION TIME-DELAY GENERATOR

DOEpatents

Carr, B.J.; Peckham, V.D.

1959-06-16

A precision time-delay generator circuit with low jitter is described. The first thyratron has a series resonant circuit and a diode which is connected to the second thyratron. The first thyratron is triggered at the begin-ning of a time delay and a capacitor is discharged through the first thyratron and the diode, thereby, triggering the second thyratron. (T.R.H.) l6l9O The instrument described can measure pressures between sea level and 300,000 ft. The pressure- sensing transducer of the instrument is a small cylindrical tube with a thin foil of titanium-tritium fastened around the inside of the tube. Output is a digital signal which can be used for storage or telemetering more conveniently than an analog signal. (W.D.M.) l6l9l An experimental study was made on rolling contacts in the temperature range of 550 to 1000 deg F. Variables such as material composition, hardness, and operating conditions were investigated in a rolling test stand. Ball bearing tests were run to determine the effect of design parameters, bearing materials, lubricants, and operating conditions. (auth)

Social networking in nursing education: integrative literature review.

PubMed

Kakushi, Luciana Emi; Évora, Yolanda Dora Martinez

2016-01-01

to identify the use of social networking in nursing education. integrative literature review in the databases: LILACS, IBECS, Cochrane, BDENF, SciELO, CINAHL, Scopus, PubMed, CAPES Periodicals Portal and Web of Science, using the descriptors: social networking and nursing education and the keywords: social networking sites and nursing education, carried out in April 2015. of the 489 articles found, only 14 met the inclusion and exclusion criteria. Most studies were published after 2013 (57%), originating from the United States and United Kingdom (77.8%). It was observed the use of social networking among nursing students, postgraduate students, mentors and nurses, in undergraduate programmes, hybrid education (blended-learning) and in interprofessional education. The social networking sites used in the teaching and learning process were Facebook (42.8%), Ning (28.5%), Twitter (21.4%) and MySpace (7.1%), by means of audios, videos, quizzes, animations, forums, guidance, support, discussions and research group. few experiences of the use of social networking in nursing education were found and their contributions show the numerous benefits and difficulties faced, providing resourses for the improvement and revaluation of their use in the teaching and learning process.

Social networking in nursing education: integrative literature review

PubMed Central

Kakushi, Luciana Emi; Évora, Yolanda Dora Martinez

2016-01-01

Abstract Objective: to identify the use of social networking in nursing education. Method: integrative literature review in the databases: LILACS, IBECS, Cochrane, BDENF, SciELO, CINAHL, Scopus, PubMed, CAPES Periodicals Portal and Web of Science, using the descriptors: social networking and nursing education and the keywords: social networking sites and nursing education, carried out in April 2015. Results: of the 489 articles found, only 14 met the inclusion and exclusion criteria. Most studies were published after 2013 (57%), originating from the United States and United Kingdom (77.8%). It was observed the use of social networking among nursing students, postgraduate students, mentors and nurses, in undergraduate programmes, hybrid education (blended-learning) and in interprofessional education. The social networking sites used in the teaching and learning process were Facebook (42.8%), Ning (28.5%), Twitter (21.4%) and MySpace (7.1%), by means of audios, videos, quizzes, animations, forums, guidance, support, discussions and research group. Conclusion: few experiences of the use of social networking in nursing education were found and their contributions show the numerous benefits and difficulties faced, providing resourses for the improvement and revaluation of their use in the teaching and learning process. PMID:27384465

[High fidelity simulation : a new tool for learning and research in pediatrics].

PubMed

Bragard, I; Farhat, N; Seghaye, M-C; Schumacher, K

2016-10-01

Caring for a sick child represents a high risk activity that requires technical and non-technical skills related to several factors such as the rarity of certain events or the stress of caring for a child. As regard these conditions, medi¬cal simulation provides a learning environment without risk, the control of variables, the reproducibility of situations, and the confrontation with rare events. In this article, we des¬cribe the steps of a simulation session and outline the current knowledge of the use of simulation in paediatrics. A session of simulation includes seven phases following the model of Peter Dieckmann, particularly the scenario and the debriefing that form the heart of the learning experience. Several studies have shown the advantages of simulation for paediatric trai¬ning in terms of changes in attitudes, skills and knowledge. Some studies have demonstrated a beneficial transfer to prac¬tice. In conclusion, simulation provides great potential for training and research in paediatrics. The establishment of a collaborative research program by the whole simulation com¬munity would help ensure that this type of training improves the quality of care.

Sports cardiology: lessons from the past and perspectives for the future.

PubMed

Leischik, Roman

2015-01-01

The possibility of myocardial damage as a result of endurance sport has been known about since ancient times. According to a leg-end, a soldier named Pheidippides (more likely Philippides) dropped dead after run-ning from war-torn Marathon to Athens with the news of victory. Millennia later, we do not know whether he was a soldier or a courier, or whether he really ran the entire 240 km from Athens to Sparta and then back from Marathon to Athens. What is clear however, is that his death went down in history as the first documented exercise-related death and provides a tangible starting-point for the discipline of sport cardiology. Sports cardiology today covers a broad range of areas; from patients with cardiomyopathies, coronary disease and metabolic syndrome through to fitness fans, high-performance athletes and those with physically demanding professions. The following editorial introduces the primary topics for discussion to be included in the F1000Research channel Sports cardiology with the hope that this will evoke open, controversial and broad discourse in the form of reviews and original research papers in this important field.

Traditional Chinese and Indian medicine in the treatment of opioid-dependence: a review

PubMed Central

Doosti, Fatemeh; Dashti, Saeedeh; Tabatabai, Seyed Meghdad; Hosseinzadeh, Hossein

2013-01-01

Objective: In this study, the current literatures on the use of herbs and herbal preparations of Traditional Chinese and Indian Medicine for the treatment of opioid addiction were reviewed. Matherials and Methods: Search was done in databases such as Pub Med, Science Direct, Scopus, Springer Link, and Google Scholar. Results: Among 18 retrieved studies, 3 studies were about asafetida extract, an approved preparation for ameliorating drug abstinence in China. Chinese preparations including Composite Dong Yuan Gao, Qingjunyin and TJ-97 (a water extract of dai-bofu-to) as well as Indian ones, Mentate and Shilajit, were reported to have positive effects against opioid withdrawal, dependence, and tolerance. Moreover, Levo-tetrahydropalmatine and L-Stepholidine, in addition to extracts of Caulis Sinomenii and Sinomenium acutum showed similar effects. Banxia Houpu Decoction, Fu-Yuan pellet, Jinniu capsules, Qingjunyin, Tai-Kang-Ning capsule, and Xuan Xia Qudu Jiaonang (WeiniCom) from Chinese preparations, showed anti-addiction effects in randomized, double-blind and, in some studies, multicenter clinical trials. Conclusion : Traditional herbal preparations of China and India have anti-addiction effects with less adverse effects than alpha2-adrenergic or opioid agonists. PMID:25050276

Traditional Chinese and Indian medicine in the treatment of opioid-dependence: a review.

PubMed

Doosti, Fatemeh; Dashti, Saeedeh; Tabatabai, Seyed Meghdad; Hosseinzadeh, Hossein

2013-01-01

In this study, the current literatures on the use of herbs and herbal preparations of Traditional Chinese and Indian Medicine for the treatment of opioid addiction were reviewed. Matherials and Methods: Search was done in databases such as Pub Med, Science Direct, Scopus, Springer Link, and Google Scholar. Among 18 retrieved studies, 3 studies were about asafetida extract, an approved preparation for ameliorating drug abstinence in China. Chinese preparations including Composite Dong Yuan Gao, Qingjunyin and TJ-97 (a water extract of dai-bofu-to) as well as Indian ones, Mentate and Shilajit, were reported to have positive effects against opioid withdrawal, dependence, and tolerance. Moreover, Levo-tetrahydropalmatine and L-Stepholidine, in addition to extracts of Caulis Sinomenii and Sinomenium acutum showed similar effects. Banxia Houpu Decoction, Fu-Yuan pellet, Jinniu capsules, Qingjunyin, Tai-Kang-Ning capsule, and Xuan Xia Qudu Jiaonang (WeiniCom) from Chinese preparations, showed anti-addiction effects in randomized, double-blind and, in some studies, multicenter clinical trials. Conclusion : Traditional herbal preparations of China and India have anti-addiction effects with less adverse effects than alpha2-adrenergic or opioid agonists.

Chemical Profiling of Re-Du-Ning Injection by Ultra-Performance Liquid Chromatography Coupled with Electrospray Ionization Tandem Quadrupole Time-of-Flight Mass Spectrometry through the Screening of Diagnostic Ions in MSE Mode

PubMed Central

Wang, Zhenzhong; Geng, Jianliang; Dai, Yi; Xiao, Wei; Yao, Xinsheng

2015-01-01

The broad applications and mechanism explorations of traditional Chinese medicine prescriptions (TCMPs) require a clear understanding of TCMP chemical constituents. In the present study, we describe an efficient and universally applicable analytical approach based on ultra-performance liquid chromatography coupled to electrospray ionization tandem quadrupole time-of-flight mass spectrometry (UPLC-ESI-Q/TOF-MS) with the MSE (E denotes collision energy) data acquisition mode, which allowed the rapid separation and reliable determination of TCMP chemical constituents. By monitoring diagnostic ions in the high energy function of MSE, target peaks of analogous compounds in TCMPs could be rapidly screened and identified. “Re-Du-Ning” injection (RDN), a eutherapeutic traditional Chinese medicine injection (TCMI) that has been widely used to reduce fever caused by viral infections in clinical practice, was studied as an example. In total, 90 compounds, including five new iridoids and one new sesquiterpene, were identified or tentatively characterized by accurate mass measurements within 5 ppm error. This analysis was accompanied by MS fragmentation and reference standard comparison analyses. Furthermore, the herbal sources of these compounds were unambiguously confirmed by comparing the extracted ion chromatograms (EICs) of RDN and ingredient herbal extracts. Our work provides a certain foundation for further studies of RDN. Moreover, the analytical approach developed herein has proven to be generally applicable for profiling the chemical constituents in TCMPs and other complicated mixtures. PMID:25875968

Comparative analysis of CDPK family in maize, Arabidopsis, rice and sorghum revealed potential targets for drought tolerance improvement

NASA Astrophysics Data System (ADS)

Mittal, Shikha; Mallikarjuna, Mallana Gowdra; Rao, Atmakuri R.; Jain, Prashant A.; Dash, Prasanta K.; Thirunavukkarasu, Nepolean

2017-12-01

Calcium dependent protein kinases (CDPKs) play major role in regulation of plant growth and development in response to various stresses including drought. A set of 32 CDPK genes identified in maize were further used for searching of orthologs in the model plant Arabidopsis (72) and major food crops such as rice (78) and sorghum (91). We comprehensively investigated the phylogenetic relationship, annotations, gene duplications, gene structure, divergence time, 3-D protein structures and tissue-specific drought induced expression of CDPK genes in all four species. Variation in intron frequency among these species likely contributed to the functional diversity of CDPK genes to various stress responses. Protein kinase and protein kinase C phosphorylation site domains were the most conserved motifs identified in all species. Four groups were identified from the sequence-based phylogenetic analysis, in which maize CDPKs were clustered in group III. The time of divergence (Ka/Ks) analysis revealed that the CDPKs were evolved through stabilizing selection. Expression data showed that the CDPK genes were highly expressed in leaf of maize, rice, and sorghum whereas in Arabidopsis the maximum expression was observed in root. 3-D protein structure were predicted for the nine genes (Arabidopsis: 2, maize: 2, rice: 3 and sorghum: 2) showing differential expression in at least three species. The predicted 3-D structures were further evaluated and validated by Ramachandran plot, ANOLEA, ProSA and Verify-3D. The superimposed 3-D structure of drought-related orthologous proteins retained similar folding pattern owing to their conserved nature. Functional annotation revealed the involvement of CDPK genes in various pathways such as osmotic homeostasis, cell protection and root growth. The interactions of CDPK genes in various pathways play crucial role in imparting drought tolerance through different ABA and MAPK signalling cascades. Our studies suggest that these selected candidate

Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.).

PubMed

Vatansever, Recep; Koc, Ibrahim; Ozyigit, Ibrahim Ilker; Sen, Ugur; Uras, Mehmet Emin; Anjum, Naser A; Pereira, Eduarda; Filiz, Ertugrul

2016-12-01

Solanum tuberosum genome analysis revealed 12 StSULTR genes encoding 18 transcripts. Among genes annotated at group level ( StSULTR I-IV), group III members formed the largest SULTRs-cluster and were potentially involved in biotic/abiotic stress responses via various regulatory factors, and stress and signaling proteins. Employing bioinformatics tools, this study performed genome-wide identification and expression analysis of SULTR (StSULTR) genes in potato (Solanum tuberosum L.). Very strict homology search and subsequent domain verification with Hidden Markov Model revealed 12 StSULTR genes encoding 18 transcripts. StSULTR genes were mapped on seven S. tuberosum chromosomes. Annotation of StSULTR genes was also done as StSULTR I-IV at group level based mainly on the phylogenetic distribution with Arabidopsis SULTRs. Several tandem and segmental duplications were identified between StSULTR genes. Among these duplications, Ka/Ks ratios indicated neutral nature of mutations that might not be causing any selection. Two segmental and one-tandem duplications were calculated to occur around 147.69, 180.80 and 191.00 million years ago (MYA), approximately corresponding to the time of monocot/dicot divergence. Two other segmental duplications were found to occur around 61.23 and 67.83 MYA, which is very close to the origination of monocotyledons. Most cis-regulatory elements in StSULTRs were found associated with major hormones (such as abscisic acid and methyl jasmonate), and defense and stress responsiveness. The cis-element distribution in duplicated gene pairs indicated the contribution of duplication events in conferring the neofunctionalization/s in StSULTR genes. Notably, RNAseq data analyses unveiled expression profiles of StSULTR genes under different stress conditions. In particular, expression profiles of StSULTR III members suggested their involvement in plant stress responses. Additionally, gene co-expression networks of these group members included various

Genomic organization, phylogenetic comparison, and expression profiles of the SPL family genes and their regulation in soybean.

PubMed

Tripathi, Rajiv K; Goel, Ridhi; Kumari, Sweta; Dahuja, Anil

2017-03-01

SQUAMOSA Promoter-Binding Protein-Like (SPL) genes form a major family of plant-specific transcription factors and play an important role in plant growth and development. In this study, we report the identification of 41 SPL genes (GmSPLs) in the soybean genome. Phylogenetic analysis revealed that these genes were divided into five groups (groups 1-5). Further, exon/intron structure and motif composition revealed that the GmSPL genes are conserved within their same group. The N-terminal zinc finger 1 (Zn1) of the SBP domain was a CCCH (Cys3His1) and the C terminus zinc finger 2 (Zn2) was a CCHC (Cys2HisCys) type. The 41 GmSPL genes were distributed unevenly on 17 of the 20 chromosomes, with tandem and segmental duplication events. We found that segmental duplication has made an important contribution to soybean SPL gene family expansion. The Ka/Ks ratios revealed that the duplicated GmSPL genes evolved under the effect of purifying selection. In addition, 17 of the 41 GmSPLs were found as targets of miR156; these might be involved in their posttranscriptional regulation through miR156. Importantly, RLM-RACE analysis confirmed the GmmiR156-mediated cleavage of GmSPL2a transcript in 2-4 mm stage of soybean seed. Alternative splicing events in 9 GmSPLs were detected which produces transcripts and proteins of different lengths that may modulate protein signaling, binding, localization, stability, and other properties. Expression analysis of the soybean SPL genes in various tissues and different developmental stages of seed suggested distinct spatiotemporal patterns. Differences in the expression patterns of miR156-targeted and miR156-non-targeted soybean SPL genes suggest that miR156 plays key functions in soybean development. Our results provide an important foundation for further uncovering the crucial roles of GmSPLs in the development of soybean and other biological processes.

Insights into the Indian Peanut Genotypes for ahFAD2 Gene Polymorphism Regulating Its Oleic and Linoleic Acid Fluxes

PubMed Central

Nawade, Bhagwat; Bosamia, Tejas C.; Thankappan, Radhakrishnan; Rathnakumar, Arulthambi L.; Kumar, Abhay; Dobaria, Jentilal R.; Kundu, Rahul; Mishra, Gyan P.

2016-01-01

In peanut (Arachis hypogaea L.), the customization of fatty acid profile is an evolving area to fulfill the nutritional needs in the modern market. A total of 174 peanut genotypes, including 167 Indian cultivars, 6 advanced breeding lines and “SunOleic95R”—a double mutant line, were investigated using AS-PCRs, CAPS and gene sequencing for the ahFAD2 allele polymorphism, along with its fatty acid compositions. Of these, 80 genotypes were found having substitution (448G>A) mutation only in ahFAD2A gene, while none recorded 1-bp insertion (441_442insA) mutation in ahFAD2B gene. Moreover, 22 wild peanut accessions found lacking both the mutations. Among botanical types, the ahFAD2A mutation was more frequent in ssp. hypogaea (89%) than in ssp. fastigiata (17%). This single allele mutation, found affecting not only oleic to linoleic acid fluxes, but also the composition of other fatty acids in the genotypes studied. Repeated use of a few selected genotypes in the Indian varietal development programs were also eminently reflected in its ahFAD2 allele polymorphism. Absence of known mutations in the wild-relatives indicated the possible origin of these mutations, after the allotetraploidization of cultivated peanut. The SNP analysis of both ahFAD2A and ahFAD2B genes, revealed haplotype diversity of 1.05% and 0.95%, while Ka/Ks ratio of 0.36 and 0.39, respectively, indicating strong purifying selection pressure on these genes. Cluster analysis, using ahFAD2 gene SNPs, showed presence of both mutant and non-mutant genotypes in the same cluster, which might be due the presence of ahFAD2 gene families. This investigation provided insights into the large number of Indian peanut genotypes, covering various aspects related to O/L flux regulation and ahFAD2 gene polymorphism. PMID:27610115

Context-specific requirements of functional domains of the Spectraplakin Short stop in vivo.

PubMed

Bottenberg, Wolfgang; Sanchez-Soriano, Natalia; Alves-Silva, Juliana; Hahn, Ines; Mende, Michael; Prokop, Andreas

2009-07-01

Spectraplakins are large multifunctional cytoskeletal interacting molecules implicated in various processes, including gastrulation, wound healing, skin blistering and neuronal degeneration. It has been speculated that the various functional domains and regions found in Spectraplakins are used in context-specific manners, a model which would provide a crucial explanation for the multifunctional nature of Spectraplakins. Here we tested this possibility by studying domain requirements of the Drosophila Spectraplakin Short stop (Shot) in three different cellular contexts in vivo: (1) neuronal growth, which requires dynamic actin-microtubule interaction; (2) formation and maintenance of tendon cells, which depends on highly stabilised arrays of actin filaments and microtubules, and (3) compartmentalisation in neurons, which is likely to involve cortical F-actin networks. Using these cellular contexts for rescue experiments with Shot deletion constructs in shot mutant background, a number of differential domain requirements were uncovered. First, binding of Shot to F-actin through the first Calponin domain is essential in neuronal contexts but dispensable in tendon cells. This finding is supported by our analyses of shot(kakP2) mutant embryos, which produce only endogenous isoforms lacking the first Calponin domain. Thus, our data demonstrate a functional relevance for these isoforms in vivo. Second, we provide the first functional role for the Plakin domain of Shot, which has a strong requirement for compartmentalisation in neurons and axonal growth, demonstrating that Plakin domains of long Spectraplakin isoforms are of functional relevance. Like the Calponin domain, also the Plakin domain is dispensable in tendon cells, and the currently assumed role of Shot as a linker of microtubules to the tendon cell surface may have to be reconsidered. Third, we demonstrate a function of Shot as an actin-microtubule linker in dendritic growth, thus shedding new light into

Complete chloroplast DNA sequence from a Korean endemic genus, Megaleranthis saniculifolia, and its evolutionary implications.

PubMed

Kim, Young-Kyu; Park, Chong-wook; Kim, Ki-Joong

2009-03-31

The chloroplast DNA sequences of Megaleranthis saniculifolia, an endemic and monotypic endangered plant species, were completed in this study (GenBank FJ597983). The genome is 159,924 bp in length. It harbors a pair of IR regions consisting of 26,608 bp each. The lengths of the LSC and SSC regions are 88,326 bp and 18,382 bp, respectively. The structural organizations, gene and intron contents, gene orders, AT contents, codon usages, and transcription units of the Megaleranthis chloroplast genome are similar to those of typical land plant cp DNAs. However, the detailed features of Megaleranthis chloroplast genomes are substantially different from that of Ranunculus, which belongs to the same family, the Ranunculaceae. First, the Megaleranthis cp DNA was 4,797 bp longer than that of Ranunculus due to an expanded IR region into the SSC region and duplicated sequence elements in several spacer regions of the Megaleranthis cp genome. Second, the chloroplast genomes of Megaleranthis and Ranunculus evidence 5.6% sequence divergence in the coding regions, 8.9% sequence divergence in the intron regions, and 18.7% sequence divergence in the intergenic spacer regions, respectively. In both the coding and noncoding regions, average nucleotide substitution rates differed markedly, depending on the genome position. Our data strongly implicate the positional effects of the evolutionary modes of chloroplast genes. The genes evidencing higher levels of base substitutions also have higher incidences of indel mutations and low Ka/Ks ratios. A total of 54 simple sequence repeat loci were identified from the Megaleranthis cp genome. The existence of rich cp SSR loci in the Megaleranthis cp genome provides a rare opportunity to study the population genetic structures of this endangered species. Our phylogenetic trees based on the two independent markers, the nuclear ITS and chloroplast matK sequences, strongly support the inclusion of the Megaleranthis to the Trollius. Therefore, our

Discovery of a novel bottlenose dolphin coronavirus reveals a distinct species of marine mammal coronavirus in Gammacoronavirus.

PubMed

Woo, Patrick C Y; Lau, Susanna K P; Lam, Carol S F; Tsang, Alan K L; Hui, Suk-Wai; Fan, Rachel Y Y; Martelli, Paolo; Yuen, Kwok-Yung

2014-01-01

While gammacoronaviruses mainly comprise infectious bronchitis virus (IBV) and its closely related bird coronaviruses (CoVs), the only mammalian gammacoronavirus was discovered from a white beluga whale (beluga whale CoV [BWCoV] SW1) in 2008. In this study, we discovered a novel gammacoronavirus from fecal samples from three Indo-Pacific bottlenose dolphins (Tursiops aduncus), which we named bottlenose dolphin CoV (BdCoV) HKU22. All the three BdCoV HKU22-positive samples were collected on the same date, suggesting a cluster of infection, with viral loads of 1 × 10(3) to 1 × 10(5) copies per ml. Clearance of virus was associated with a specific antibody response against the nucleocapsid of BdCoV HKU22. Complete genome sequencing and comparative genome analysis showed that BdCoV HKU22 and BWCoV SW1 have similar genome characteristics and structures. Their genome size is about 32,000 nucleotides, the largest among all CoVs, as a result of multiple unique open reading frames (NS5a, NS5b, NS5c, NS6, NS7, NS8, NS9, and NS10) between their membrane (M) and nucleocapsid (N) protein genes. Although comparative genome analysis showed that BdCoV HKU22 and BWCoV SW1 should belong to the same species, a major difference was observed in the proteins encoded by their spike (S) genes, which showed only 74.3 to 74.7% amino acid identities. The high ratios of the number of synonymous substitutions per synonymous site (Ks) to the number of nonsynonymous substitutions per nonsynonymous site (Ka) in multiple regions of the genome, especially the S gene (Ka/Ks ratio, 2.5), indicated that BdCoV HKU22 may be evolving rapidly, supporting a recent transmission event to the bottlenose dolphins. We propose a distinct species, Cetacean coronavirus, in Gammacoronavirus, to include BdCoV HKU22 and BWCoV SW1, whereas IBV and its closely related bird CoVs represent another species, Avian coronavirus, in Gammacoronavirus.

Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

PubMed Central

Pavy, Nathalie; Parsons, Lee S; Paule, Charles; MacKay, John; Bousquet, Jean

2006-01-01

Background High-throughput genotyping technologies represent a highly efficient way to accelerate genetic mapping and enable association studies. As a first step toward this goal, we aimed to develop a resource of candidate Single Nucleotide Polymorphisms (SNP) in white spruce (Picea glauca [Moench] Voss), a softwood tree of major economic importance. Results A white spruce SNP resource encompassing 12,264 SNPs was constructed from a set of 6,459 contigs derived from Expressed Sequence Tags (EST) and by using the bayesian-based statistical software PolyBayes. Several parameters influencing the SNP prediction were analysed including the a priori expected polymorphism, the probability score (PSNP), and the contig depth and length. SNP detection in 3' and 5' reads from the same clones revealed a level of inconsistency between overlapping sequences as low as 1%. A subset of 245 predicted SNPs were verified through the independent resequencing of genomic DNA of a genotype also used to prepare cDNA libraries. The validation rate reached a maximum of 85% for SNPs predicted with either PSNP ≥ 0.95 or ≥ 0.99. A total of 9,310 SNPs were detected by using PSNP ≥ 0.95 as a criterion. The SNPs were distributed among 3,590 contigs encompassing an array of broad functional categories, with an overall frequency of 1 SNP per 700 nucleotide sites. Experimental and statistical approaches were used to evaluate the proportion of paralogous SNPs, with estimates in the range of 8 to 12%. The 3,789 coding SNPs identified through coding region annotation and ORF prediction, were distributed into 39% nonsynonymous and 61% synonymous substitutions. Overall, there were 0.9 SNP per 1,000 nonsynonymous sites and 5.2 SNPs per 1,000 synonymous sites, for a genome-wide nonsynonymous to synonymous substitution rate ratio (Ka/Ks) of 0.17. Conclusion We integrated the SNP data in the ForestTreeDB database along with functional annotations to provide a tool facilitating the choice of candidate

Characterization of two forms of mouse salivary androgen-binding protein (ABP): implications for evolutionary relationships and ligand-binding function.

PubMed

Karn, Robert C; Laukaitis, Christina M

2003-06-17

Mouse salivary androgen-binding protein (ABP) is a member of the secretoglobin family produced in the submaxillary glands of house mice (Mus musculus). We report the cDNA sequences and amino acid sequences of the beta and gamma subunits of ABP from a mouse cDNA library, identifying the two subunits by their pIs and molecular weights. An anomalously high molecular weight of the alpha subunit is likely due to glycosylation at a single site. A phylogenetic comparison of the three subunits of ABP with the chains of other mammalian secretoglobins shows that ABP is most closely related to mouse lachrymal protein and to the major cat allergen Fel dI. An evaluation of the most conserved residues in ABP and the other secretoglobins, in light of structural data reported by others [Callebaut, I., Poupon, A., Bally, R., Demaret, J.-P., Housset, D., Delettre, J., Hossenlopp, P., and Mornon, J.-P. (2000) Ann. N.Y. Acad. Sci. 923, 90-112; Pattabiraman, N., Matthews, J., Ward, K., Mantile-Selvaggi, G., Miele, L., and Mukherjee, A. (2000) Ann. N.Y. Acad. Sci. 923, 113-127], allows us to draw conclusions about the critical residues important in ligand binding by the two different ABP dimers and to assess the importance of ligand binding in the function of the molecule. In addition to the cDNAs, which represent those of the musculus subspecies of Mus musculus, we also report the coding regions of the beta and gamma subunit cDNAs from two other mouse inbred strains which represent the other two subspecies: M. musculus domesticus and M. musculus castaneus. The high nonsynonymous/synonymous substitution rate ratios (K(a)/K(s)) for both the beta and gamma subunits suggest that these two proteins are evolving under strong directional selection, as has been reported for the alpha subunit [Hwang, J., Hofstetter, J., Bonhomme, F., and Karn, R. (1997) J. Hered. 88, 93-97; Karn, R., and Clements, M. (1999) Biochem. Genet. 37, 187-199].

Meta-analysis of cancer gene expression signatures reveals new cancer genes, SAGE tags and tumor associated regions of co-regulation

PubMed Central

Kavak, Erşen; Ünlü, Mustafa; Nistér, Monica; Koman, Ahmet

2010-01-01

Cancer is among the major causes of human death and its mechanism(s) are not fully understood. We applied a novel meta-analysis approach to multiple sets of merged serial analysis of gene expression and microarray cancer data in order to analyze transcriptome alterations in human cancer. Our methodology, which we denote ‘COgnate Gene Expression patterNing in tumours’ (COGENT), unmasked numerous genes that were differentially expressed in multiple cancers. COGENT detected well-known tumor-associated (TA) genes such as TP53, EGFR and VEGF, as well as many multi-cancer, but not-yet-tumor-associated genes. In addition, we identified 81 co-regulated regions on the human genome (RIDGEs) by using expression data from all cancers. Some RIDGEs (28%) consist of paralog genes while another subset (30%) are specifically dysregulated in tumors but not in normal tissues. Furthermore, a significant number of RIDGEs are associated with GC-rich regions on the genome. All assembled data is freely available online (www.oncoreveal.org) as a tool implementing COGENT analysis of multi-cancer genes and RIDGEs. These findings engender a deeper understanding of cancer biology by demonstrating the existence of a pool of under-studied multi-cancer genes and by highlighting the cancer-specificity of some TA-RIDGEs. PMID:20621981

Anomaly formulas for the complex-valued analytic torsion on compact bordisms

PubMed Central

Maldonado Molina, Osmar

2013-01-01

We extend the complex-valued analytic torsion, introduced by Burghelea and Haller on closed manifolds, to compact Riemannian bordisms. We do so by considering a flat complex vector bundle over a compact Riemannian manifold, endowed with a fiberwise nondegenerate symmetric bilinear form. The Riemmanian metric and the bilinear form are used to define non-selfadjoint Laplacians acting on vector-valued smooth forms under absolute and relative boundary conditions. In order to define the complex-valued analytic torsion in this situation, we study spectral properties of these generalized Laplacians. Then, as main results, we obtain so-called anomaly formulas for this torsion. Our reasoning takes into account that the coefficients in the heat trace asymptotic expansion associated to the boundary value problem under consideration, are locally computable. The anomaly formulas for the complex-valued Ray–Singer torsion are derived first by using the corresponding ones for the Ray–Singer metric, obtained by Brüning and Ma on manifolds with boundary, and then an argument of analytic continuation. In odd dimensions, our anomaly formulas are in accord with the corresponding results of Su, without requiring the variations of the Riemannian metric and bilinear structures to be supported in the interior of the manifold. PMID:27087744

Expanding NASA Science Cooperation with New Partners

NASA Astrophysics Data System (ADS)

Allen, Marc; Bress, Kent

Expanding NASA Science Cooperation with New Partners When NASA was created in 1958, it was given a goal of "cooperation by the United States with other nations and groups of nations in work done pursuant to this Act and in the peaceful application of the results." As science has become increasingly globalized during the past 50 years, NASA and its many partners in space and Earth science research have benefited enormously from pooling ideas, skills, and resources for joint undertakings. The discoveries made have powerfully advanced public awareness of science and its importance all over the world. Today, the U.S. Administra-tion is encouraging NASA to expand its cooperation with new and emerging partners. NASA space and Earth science cooperation is founded on scientist-to-scientist research collaboration. Space missions are very costly and technically challenging, but there are many other important areas for international cooperation. Areas ripe for expansion with new partners include space data sharing, scientist-to-scientist collaborative research, international research program plan-ning and coordination, Earth applications for societal benefit, ground-based measurements for Earth system science, and education and public outreach. This presentation lays out NASA's general principles for international science cooperation, briefly describes each of these opportu-nity areas, and suggests avenues for initiating new cooperative relationships.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirby, Carolyn L; Lord, Anna C. Snider

The Bryan Mound caprock was subjected to extens ive sulphur mining prior to the development of the Strategic Petroleum Reserve. Undoubtedl y, the mining has modified the caprock integrity. Cavern wells at Bryan Mound have been subject to a host of well integr ity concerns with many likely compromised by the cavernous capro ck, surrounding corrosive environment (H 2 SO 4 ), and associated elevated residual temperatures al l of which are a product of the mining activities. The intent of this study was to understand the sulphur mining process and how the mining has affected the stability of themore » caprock and how the compromised caprock has influenced the integrity of the cavern wells. After an extensiv e search to collect pert inent information through state agencies, literature sear ches, and the Sandia SPR librar y, a better understanding of the caprock can be inferred from the knowledge gaine d. Specifically, the discovery of the original ore reserve map goes a long way towards modeling caprock stability. In addition the gained knowledge of sulphur mining - subs idence, superheated corrosive wa ters, and caprock collapse - helps to better predict the post mi ning effects on wellbore integrity. This page intentionally left blank« less

Reducing HIV infection among new injecting drug users in the China-Vietnam Cross Border Project.

PubMed

Des Jarlais, Don C; Kling, Ryan; Hammett, Theodore M; Ngu, Doan; Liu, Wei; Chen, Yi; Binh, Kieu Thanh; Friedmann, Patricia

2007-12-01

To assess an HIV prevention programme for injecting drug users (IDU) in the crossborder area between China and Vietnam. Serial cross-sectional surveys (0, 6, 12, 18, 24 and 36 months) of community-recruited current IDU. The project included peer educator outreach and the large-scale distribution of sterile injection equipment. Serial cross-sectional surveys with HIV testing of community recruited IDU were conducted at baseline (before implementation) and 6, 12, 18, 24 and 36 months post-baseline. HIV prevalence and estimated HIV incidence among new injectors (individuals injecting drugs for < 3 years) in each survey wave were the primary outcome measures. The percentages of new injectors among all subjects declined across each survey waves in both Ning Ming and Lang Son. HIV prevalence and estimated incidence fell by approximately half at the 24-month survey and by approximately three quarters at the 36-month survey in both areas (all P < 0.01). The implementation of large-scale outreach and syringe access programmes was followed by substantial reductions in HIV infection among new injectors, with no evidence of any increase in individuals beginning to inject drugs. This project may serve as a model for large-scale HIV prevention programming for IDU in China, Vietnam, and other developing/transitional countries.

LabData database sub-systems for post-processing and quality control of stable isotope and gas chromatography measurements

NASA Astrophysics Data System (ADS)

Suckow, A. O.

2013-12-01

Measurements need post-processing to obtain results that are comparable between laboratories. Raw data may need to be corrected for blank, memory, drift (change of reference values with time), linearity (dependence of reference on signal height) and normalized to international reference materials. Post-processing parameters need to be stored for traceability of results. State of the art stable isotope correction schemes are available based on MS Excel (Geldern and Barth, 2012; Gröning, 2011) or MS Access (Coplen, 1998). These are specialized to stable isotope measurements only, often only to the post-processing of a special run. Embedding of algorithms into a multipurpose database system was missing. This is necessary to combine results of different tracers (3H, 3He, 2H, 18O, CFCs, SF6...) or geochronological tools (Sediment dating e.g. with 210Pb, 137Cs), to relate to attribute data (submitter, batch, project, geographical origin, depth in core, well information etc.) and for further interpretation tools (e.g. lumped parameter modelling). Database sub-systems to the LabData laboratory management system (Suckow and Dumke, 2001) are presented for stable isotopes and for gas chromatographic CFC and SF6 measurements. The sub-system for stable isotopes allows the following post-processing: 1. automated import from measurement software (Isodat, Picarro, LGR), 2. correction for sample-to sample memory, linearity, drift, and renormalization of the raw data. The sub-system for gas chromatography covers: 1. storage of all raw data 2. storage of peak integration parameters 3. correction for blank, efficiency and linearity The user interface allows interactive and graphical control of the post-processing and all corrections by export to and plot in MS Excel and is a valuable tool for quality control. The sub-databases are integrated into LabData, a multi-user client server architecture using MS SQL server as back-end and an MS Access front-end and installed in four

Evolution of a Subduction Zone

NASA Astrophysics Data System (ADS)

Noack, Lena; Van Hoolst, Tim; Dehant, Veronique

2014-05-01

the subduction of the oceanic crust in terms of subduction velocity and subduction angle over time. We develop scaling laws combining the subduction velocity and angle depending on the mantle environment (and thus time). These laws can then be applied to continental growth simulations with 1D parameterized models (Höning et al., in press) or 2D/3D subduction zone simulations at specific geological times (using the correct subduction zone setting). References: Quinquis, M. et al. (in preparation). A comparison of thermo-mechanical subduction models. In preparation for G3. Noack, L., Van Hoolst, T., Dehant, V., and Breuer, D. (2013). Relevance of continents for habitability and self-consistent formation of continents on early Earth. XIII International Workshop on Modelling of Mantle and Lithosphere Dynamics, Hønefoss, Norway, 31. Aug. - 5. Sept. 2013. Höning, D., Hansen-Goos, H., Airo, A., and Spohn, T. (in press). Biotic vs. abiotic Earth: A model for mantle hydration and continental coverage. Planetary and Space Science.

Moya moya: étiologie rare d’accident vasculaire cérébral ischémique chez l’enfant: à propos d’un cas

PubMed Central

Chibli, Radia; Omor, Youssef; Sebbouba, Nadir Slimani; Hassani, Moulay Rachid El; Jiddane, Mohamed; Fikri, Meriem

2017-01-01

La maladie de Moya Moya est une maladie angiogénique, caractérisée par un rétrécissement de l'artère carotide interne distale qui s'étend aux segments proximaux des artères cérébrales moyennes et antérieures, induisant la formation de vaisseaux de suppléance. Ces derniers proviennent des collatérales parenchymateuses, perforantes, leptoméningées et autres anastomoses transdurales. Ces vaisseaux collatéraux ont un aspect caractéristique à l'angiographie formant un nuage de fumée : réseau Moya Moya. Son étiologie reste encore mal élucidée et représente 10 à 15% des causes d'accidents vasculaires cérébraux (AVC), avec 2 pics d'âge où l'atteinte est plus fréquente: les enfants autour de 5 ans et les adultes autour de 40 ans. Son évolution peut être lente avec des symptômes intermittents ou être fulminante avec un déclin neurologique rapide. Les données actuelles montrent l'importance du traitement chirurgical comme méthode de référence pour la prise en charge du syndrome de Moya en particulier chez les patients avec des symptômes progressifs et récidivants. PMID:29599890

Optical system for tablet variety discrimination using visible/near-infrared spectroscopy

NASA Astrophysics Data System (ADS)

Shao, Yongni; He, Yong; Hu, Xingyue

2007-12-01

An optical system based on visible/near-infrared spectroscopy (Vis/NIRS) for variety discrimination of ginkgo (Ginkgo biloba L.) tablets was developed. This system consisted of a light source, beam splitter system, sample chamber, optical detector (diffuse reflection detector), and data collection. The tablet varieties used in the research include Da na kang, Xin bang, Tian bao ning, Yi kang, Hua na xing, Dou le, Lv yuan, Hai wang, and Ji yao. All samples (n=270) were scanned in the Vis/NIR region between 325 and 1075 nm using a spectrograph. The chemometrics method of principal component artificial neural network (PC-ANN) was used to establish discrimination models of them. In PC-ANN models, the scores of the principal components were chosen as the input nodes for the input layer of ANN, and the best discrimination rate of 91.1% was reached. Principal component analysis was also executed to select several optimal wavelengths based on loading values. Wavelengths at 481, 458, 466, 570, 1000, 662, and 400 nm were then used as the input data of stepwise multiple linear regression, the regression equation of ginkgo tablets was obtained, and the discrimination rate was researched 84.4%. The results indicated that this optical system could be applied to discriminating ginkgo (Ginkgo biloba L.) tablets, and it supplied a new method for fast ginkgo tablet variety discrimination.

Rough spacecraft surfaces -a threat to Planetary Protection issues

NASA Astrophysics Data System (ADS)

Probst, Alexander; Facius, Rainer; Wirth, Reinhard; Moissl-Eichinger, Christine

Inadvertent introduction of terrestrial microorganisms to foreign solar bodies could compromise the integrity of present and future life detection missions. For Planetary Protection purposes space agencies measure the aerobic, mesophilic spore load of a spacecraft as a proxy indicator in order to determine its bioload. Emerging novel hardware in space science implicates novel surface structures and materials that need to be controlled with regard to contaminations. For instance (roughened) carbon fiber reinforced plastic and Vectran fabric for construction of landing platforms and airbags, respectively, have been used in some Mars exploration missions. These materials have different levels of roughness and their potential risk to retain spores for insufficient sampling success has never been in scope of investigation. In this comprehensive study we evaluated ESA's novel nylon flocked swab protocol on stainless steel and other tech-nical surfaces with regard to Bacillus spore recovery. Low recovery efficiencies of the ESA standard wipe assay for large surface sampling were demonstrated with regard to Bacillus at-rophaeus spore detection. Therefore another protocol designed for rough surface sampling was evaluated on Vectran fabric and (roughened) carbon fiber reinforced plastic. Moreover, scan-ning electron micrographs of the technical surfaces studied allowed a more detailed view on their properties. The evaluated sampling protocols and the corresponding results are of high interest for future life detection missions in order to preserve their scientific integrity throughout spacecraft assembly.

Westinghouse Cementation Facility of Solid Waste Treatment System - 13503

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jacobs, Torsten; Aign, Joerg

2013-07-01

During NPP operation, several waste streams are generated, caused by different technical and physical processes. Besides others, liquid waste represents one of the major types of waste. Depending on national regulation for storage and disposal of radioactive waste, solidification can be one specific requirement. To accommodate the global request for waste treatment systems Westinghouse developed several specific treatment processes for the different types of waste. In the period of 2006 to 2008 Westinghouse awarded several contracts for the design and delivery of waste treatment systems related to the latest CPR-1000 nuclear power plants. One of these contracts contains the deliverymore » of four Cementation Facilities for waste treatment, s.c. 'Follow on Cementations' dedicated to three locations, HongYanHe, NingDe and YangJiang, of new CPR-1000 nuclear power stations in the People's Republic of China. Previously, Westinghouse delivered a similar cementation facility to the CPR-1000 plant LingAo II, in Daya Bay, PR China. This plant already passed the hot functioning tests successfully in June 2012 and is now ready and released for regular operation. The 'Follow on plants' are designed to package three 'typical' kind of radioactive waste: evaporator concentrates, spent resins and filter cartridges. The purpose of this paper is to provide an overview on the Westinghouse experience to design and execution of cementation facilities. (authors)« less

The complete chloroplast genome sequence of strawberry (Fragaria  × ananassa Duch.) and comparison with related species of Rosaceae

PubMed Central

Cheng, Hui; Li, Jinfeng; Zhang, Hong; Cai, Binhua; Gao, Zhihong

2017-01-01

Compared with other members of the family Rosaceae, the chloroplast genomes of Fragaria species exhibit low variation, and this situation has limited phylogenetic analyses; thus, complete chloroplast genome sequencing of Fragaria species is needed. In this study, we sequenced the complete chloroplast genome of F. × ananassa ‘Benihoppe’ using the Illumina HiSeq 2500-PE150 platform and then performed a combination of de novo assembly and reference-guided mapping of contigs to generate complete chloroplast genome sequences. The chloroplast genome exhibits a typical quadripartite structure with a pair of inverted repeats (IRs, 25,936 bp) separated by large (LSC, 85,531 bp) and small (SSC, 18,146 bp) single-copy (SC) regions. The length of the F. × ananassa ‘Benihoppe’ chloroplast genome is 155,549 bp, representing the smallest Fragaria chloroplast genome observed to date. The genome encodes 112 unique genes, comprising 78 protein-coding genes, 30 tRNA genes and four rRNA genes. Comparative analysis of the overall nucleotide sequence identity among ten complete chloroplast genomes confirmed that for both coding and non-coding regions in Rosaceae, SC regions exhibit higher sequence variation than IRs. The Ka/Ks ratio of most genes was less than 1, suggesting that most genes are under purifying selection. Moreover, the mVISTA results also showed a high degree of conservation in genome structure, gene order and gene content in Fragaria, particularly among three octoploid strawberries which were F. × ananassa ‘Benihoppe’, F. chiloensis (GP33) and F. virginiana (O477). However, when the sequences of the coding and non-coding regions of F. × ananassa ‘Benihoppe’ were compared in detail with those of F. chiloensis (GP33) and F. virginiana (O477), a number of SNPs and InDels were revealed by MEGA 7. Six non-coding regions (trnK-matK, trnS-trnG, atpF-atpH, trnC-petN, trnT-psbD and trnP-psaJ) with a percentage of variable sites greater than 1% and no less

Identification of the critical sites of NNRTI-resistance in reverse transcriptase of HIV-1 CRF_BC strains.

PubMed

Huang, Yang; Li, Zhenpeng; Xing, Hui; Jiao, Yang; Ouyang, Yabo; Liao, Lingjie; Jiang, Shibo; Armstrong, Rebecca; Shao, Yiming; Ma, Liying

2014-01-01

The polymorphisms involved in drug resistance to non-nucleoside reverse transcriptase inhibitors (NNRTIs) in HIV-1 CRF_BC, the most prevalent HIV-1 strain in China, have been poorly characterized. To reveal the drug resistance mutations, we compared the gene sequences of pol region of HIV-1 CRF_BC from 631 treatment-naïve and 363 treatment-experienced patients using the selection pressure-based method. We calculated an individual Ka/Ks value for each specific amino acid mutation. Result showed that eight polymorphic mutations (W88C, K101Q, I132L, R135L, T139K/R, H221Y and L228R) in RT for treatment-experienced patients were identified, while they, except for R135L, were completely absent in those from treatment-naïve patients. The I132L and T139K/R mutants exhibited high-level resistance to DLV and NVP and moderate resistance to TMC-125 and EFV, while the K101Q and H221Y mutants exhibited an increased resistance to all four NNRTIs tested. The W88C, R135L, and L228R may be RTI-induced adaptive mutations. Y181C+K101Q mutant showed a 2.5-, 4.4-, and 4.7-fold higher resistance to TMC-125, NVP and EFV, respectively, than Y181C alone mutant, while Y181C+H221Y or K103N+H221Y mutants had significantly higher resistance to all four NNRTIs than Y181C or K103N mutants. K103N+T139K and G190A+T139K mutant induce higher resistance (2.0∼14.2-fold and 1.5∼7.2-fold, respectively) to all four NNRTIs than K103N or G190A alone mutation. I132L and T139K/R are rare but critical mutations associated with NNRTI-resistance for some NNRTIs. K101Q, H221Y and T139K can enhance K103N/Y181C/G190A-assocated NNRTI-resistance. Monitoring these mutations will provide useful information for rational design of the NNRTI-based antiretroviral regimen for HIV-1 CRF_BC-infected patients.

Molecular evolution of the plastid genome during diversification of the cotton genus.

PubMed

Chen, Zhiwen; Grover, Corrinne E; Li, Pengbo; Wang, Yumei; Nie, Hushuai; Zhao, Yanpeng; Wang, Meiyan; Liu, Fang; Zhou, Zhongli; Wang, Xingxing; Cai, Xiaoyan; Wang, Kunbo; Wendel, Jonathan F; Hua, Jinping

2017-07-01

Cotton (Gossypium spp.) is commonly grouped into eight diploid genomic groups, designated A-G and K, and one tetraploid genomic group, namely AD. To gain insight into the phylogeny of Gossypium and molecular evolution of the chloroplast genome duringdiversification, chloroplast genomes (cpDNA) from 6 D-genome and 2 G-genome species of Gossypium (G. armourianum D 2-1 , G. harknessii D 2-2 , G. davidsonii D 3-d , G. klotzschianum D 3-k , G. aridum D 4 , G. trilobum D 8 , and G. australe G 2 , G. nelsonii G 3 ) were newly reported here. In combination with the 26 previously released cpDNA sequences, we performed comparative phylogenetic analyses of 34 Gossypium chloroplast genomes that collectively represent most of the diversity in the genus. Gossypium chloroplasts span a small range in size that is mostly attributable to indels that occur in the large single copy (LSC) region of the genome. Phylogenetic analysis using a concatenation of all genes provides robust support for six major Gossypium clades, largely supporting earlier inferences but also revealing new information on intrageneric relationships. Using Theobroma cacao as an outgroup, diversification of the genus was dated, yielding results that are in accord with previous estimates of divergence times, but also offering new perspectives on the basal, early radiation of all major clades within the genus as well as gaps in the record indicative of extinctions. Like most higher-plant chloroplast genomes, all cotton species exhibit a conserved quadripartite structure, i.e., two large inverted repeats (IR) containing most of the ribosomal RNA genes, and two unique regions, LSC (large single sequence) and SSC (small single sequence). Within Gossypium, the IR-single copy region junctions are both variable and homoplasious among species. Two genes, accD and psaJ, exhibited greater rates of synonymous and non-synonymous substitutions than did other genes. Most genes exhibited Ka/Ks ratios suggestive of neutral

The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids.

PubMed

Yi, Dong-Keun; Lee, Hae-Lim; Sun, Byung-Yun; Chung, Mi Yoon; Kim, Ki-Joong

2012-05-01

This study reports the complete chloroplast (cp) DNA sequence of Eleutherococcus senticosus (GenBank: JN 637765), an endangered endemic species. The genome is 156,768 bp in length, and contains a pair of inverted repeat (IR) regions of 25,930 bp each, a large single copy (LSC) region of 86,755 bp and a small single copy (SSC) region of 18,153 bp. The structural organization, gene and intron contents, gene order, AT content, codon usage, and transcription units of the E. senticosus chloroplast genome are similar to that of typical land plant cp DNA. We aligned and analyzed the sequences of 86 coding genes, 19 introns and 113 intergenic spacers (IGS) in three different taxonomic hierarchies; Eleutherococcus vs. Panax, Eleutherococcus vs. Daucus, and Eleutherococcus vs. Nicotiana. The distribution of indels, the number of polymorphic sites and nucleotide diversity indicate that positional constraint is more important than functional constraint for the evolution of cp genome sequences in Asterids. For example, the intron sequences in the LSC region exhibited base substitution rates 5-11-times higher than that of the IR regions, while the intron sequences in the SSC region evolved 7-14-times faster than those in the IR region. Furthermore, the Ka/Ks ratio of the gene coding sequences supports a stronger evolutionary constraint in the IR region than in the LSC or SSC regions. Therefore, our data suggest that selective sweeps by base collection mechanisms more frequently eliminate polymorphisms in the IR region than in other regions. Chloroplast genome regions that have high levels of base substitutions also show higher incidences of indels. Thirty-five simple sequence repeat (SSR) loci were identified in the Eleutherococcus chloroplast genome. Of these, 27 are homopolymers, while six are di-polymers and two are tri-polymers. In addition to the SSR loci, we also identified 18 medium size repeat units ranging from 22 to 79 bp, 11 of which are distributed in the IGS or

Evidence of accelerated evolution and ectodermal-specific expression of presumptive BDS toxin cDNAs from Anemonia viridis.

PubMed

Nicosia, Aldo; Maggio, Teresa; Mazzola, Salvatore; Cuttitta, Angela

2013-10-30

Anemonia viridis is a widespread and extensively studied Mediterranean species of sea anemone from which a large number of polypeptide toxins, such as blood depressing substances (BDS) peptides, have been isolated. The first members of this class, BDS-1 and BDS-2, are polypeptides belonging to the β-defensin fold family and were initially described for their antihypertensive and antiviral activities. BDS-1 and BDS-2 are 43 amino acid peptides characterised by three disulfide bonds that act as neurotoxins affecting Kv3.1, Kv3.2 and Kv3.4 channel gating kinetics. In addition, BDS-1 inactivates the Nav1.7 and Nav1.3 channels. The development of a large dataset of A. viridis expressed sequence tags (ESTs) and the identification of 13 putative BDS-like cDNA sequences has attracted interest, especially as scientific and diagnostic tools. A comparison of BDS cDNA sequences showed that the untranslated regions are more conserved than the protein-coding regions. Moreover, the KA/KS ratios calculated for all pairwise comparisons showed values greater than 1, suggesting mechanisms of accelerated evolution. The structures of the BDS homologs were predicted by molecular modelling. All toxins possess similar 3D structures that consist of a triple-stranded antiparallel β-sheet and an additional small antiparallel β-sheet located downstream of the cleavage/maturation site; however, the orientation of the triple-stranded β-sheet appears to differ among the toxins. To characterise the spatial expression profile of the putative BDS cDNA sequences, tissue-specific cDNA libraries, enriched for BDS transcripts, were constructed. In addition, the proper amplification of ectodermal or endodermal markers ensured the tissue specificity of each library. Sequencing randomly selected clones from each library revealed ectodermal-specific expression of ten BDS transcripts, while transcripts of BDS-8, BDS-13, BDS-14 and BDS-15 failed to be retrieved, likely due to under-representation in our

Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China

PubMed Central

Chen, Yanping; Wu, Jirong; Meng, Qingchang; Han, Xiaohua; Hao, Zhuanfang; Li, Mingshun; Yong, Hongjun; Zhang, Degui; Zhang, Shihuang; Li, Xinhai

2015-01-01

Rice black-streaked dwarf virus (RBSDV) causes maize rough dwarf disease or rice black-streaked dwarf disease and can lead to severe yield losses in maize and rice. To analyse RBSDV evolution, codon usage bias and genetic structure were investigated in 111 maize and rice RBSDV isolates from eight geographic locations in 2013 and 2014. The linear dsRNA S7 is A+U rich, with overall codon usage biased toward codons ending with A (A3s, S7-1: 32.64%, S7-2: 29.95%) or U (U3s, S7-1: 44.18%, S7-2: 46.06%). Effective number of codons (Nc) values of 45.63 in S7-1 (the first open reading frame of S7) and 39.96 in S7-2 (the second open reading frame of S7) indicate low degrees of RBSDV-S7 codon usage bias, likely driven by mutational bias regardless of year, host, or geographical origin. Twelve optimal codons were detected in S7. The nucleotide diversity (π) of S7 sequences in 2013 isolates (0.0307) was significantly higher than in 2014 isolates (0.0244, P = 0.0226). The nucleotide diversity (π) of S7 sequences in isolates from Jinan (0.0391) was higher than that from the other seven locations (P < 0.01). Only one S7 recombinant was detected in Baoding. RBSDV isolates could be phylogenetically classified into two groups according to S7 sequences, and further classified into two subgroups. S7-1 and S7-2 were under negative and purifying selection, with respective Ka/Ks ratios of 0.0179 and 0.0537. These RBSDV populations were expanding (P < 0.01) as indicated by negative values for Tajima's D, Fu and Li's D, and Fu and Li's F. Genetic differentiation was detected in six RBSDV subpopulations (P < 0.05). Absolute Fst (0.0790) and Nm (65.12) between 2013 and 2014, absolute Fst (0.1720) and Nm (38.49) between maize and rice, and absolute Fst values of 0.0085-0.3069 and Nm values of 0.56-29.61 among these eight geographic locations revealed frequent gene flow between subpopulations. Gene flow between 2013 and 2014 was the most frequent. PMID:26121638

Trait contributions to fish community assembly emerge from trophicinteractions in an individual-based model

USGS Publications Warehouse

Giacomini, Henrique C.; DeAngelis, Donald; Trexler, Joel C.; Petrere, Miguel

2013-01-01

Community ecology seeks to understand and predict the characteristics of communities that can develop under different environmental conditions, but most theory has been built on analytical models that are limited in the diversity of species traits that can be considered simultaneously. We address that limitation with an individual-based model to simulate assembly of fish communities characterized by life history and trophic interactions with multiple physiological tradeoffs as constraints on species performance. Simulation experiments were carried out to evaluate the distribution of 6 life history and 4 feeding traits along gradients of resource productivity and prey accessibility. These experiments revealed that traits differ greatly in importance for species sorting along the gradients. Body growth rate emerged as a key factor distinguishing community types and defining patterns of community stability and coexistence, followed by egg size and maximum body size. Dominance by fast-growing, relatively large, and fecund species occurred more frequently in cases where functional responses were saturated (i.e. high productivity and/or prey accessibility). Such dominance was associated with large biomass fluctuations and priority effects, which prevented richness from increasing with productivity and may have limited selection on secondary traits, such as spawning strategies and relative size at maturation. Our results illustrate that the distribution of species traits and the consequences for community dynamics are intimately linked and strictly dependent on how the benefits and costs of these traits are balanced across different conditions.

Probing the Vibrational Spectroscopy of the Deprotonated Thymine Radical by Photodetachment and State-Selective Autodetachment Photoelectron Spectroscopy via Dipole-Bound States

NASA Astrophysics Data System (ADS)

Huang, Dao-Ling; Zhu, Guo-Zhu; Wang, Lai-Sheng

2016-06-01

Deprotonated thymine can exist in two different forms, depending on which of its two N sites is deprotonated: N1[T-H]^- or N3[T-H]^-. Here we report a photodetachment study of the N1[T-H]^- isomer cooled in a cryogenic ion trap and the observation of an excited dipole-bound state. Eighteen vibrational levels of the dipole-bound state are observed, and its vibrational ground state is found to be 238 ± 5 wn below the detachment threshold of N1[T-H]^-. The electron affinity of the deprotonated thymine radical (N1[T-H]^.) is measured accruately to be 26 322 ± 5 wn (3.2635 ± 0.0006 eV). By tuning the detachment laser to the sixteen vibrational levels of the dipole-bound state that are above the detachment threshold, highly non-Franck-Condon resonant-enhanced photoelectron spectra are obtained due to state- and mode-selective vibrational autodetachment. Much richer vibrational information is obtained for the deprotonated thymine radical from the photodetachment and resonant-enhanced photoelectron spectroscopy. Eleven fundamental vibrational frequencies in the low-frequency regime are obtained for the N1[T-H]^. radical, including the two lowest-frequency internal rotational modes of the methyl group at 70 ± 8 wn and 92 ± 5 wn. D. L. Huang, H. T. Liu, C. G. Ning, G. Z. Zhu and L. S. Wang, Chem. Sci., 6, 3129-3138 (2015)

The Onsala Twin Telescope Project

NASA Astrophysics Data System (ADS)

Haas, R.

2013-08-01

This paper described the Onsala Twin Telescope project. The project aims at the construction of two new radio telescopes at the Onsala Space Observatory, following the VLBI2010 concept. The project starts in 2013 and is expected to be finalized within 4 years. Z% O. Rydbeck. Chalmers Tekniska Högskola, Göteborg, ISBN 91-7032-621-5, 407-823, 1991. B. Petrachenko, A. Niell, D. Behrend, B. Corey, J. Böhm, P. Charlot, A. Collioud, J. Gipson, R. Haas, Th. Hobiger, Y. Koyama, D. MacMillan, Z. Malkin, T. Nilsson, A. Pany, G. Tuccari, A. Whitney, and J. Wresnik. Design Aspects of the VLBI2010 System. NASA/TM-2009-214180, 58 pp., 2009. R. Haas, G. Elgered, J. Löfgren, T. Ning, and H.-G. Scherneck. Onsala Space Observatory - IVS Network Station. In K. D. Baver and D. Behrend, editors, International VLBI Service for Geodesy and Astrometry 2011 Annual Report, NASA/TP-2012-217505, 88-91, 2012. H.-G. Scherneck, G. Elgered, J. M. Johansson, and B. O. Rönnäng. Phys. Chem. Earth, Vol. 23, No. 7-8, 811-823, 1998. A. R. Whitney. Ph.D. thesis, Dept. of Electrical engineering, MIT Cambridge, MA., 1974. B. A. Harper, J. D. Kepert, and J. D. Ginger. Guidelines for converting between various wind averaging periods in tropical cyclone conditions. WMO/TD-No. 1555, 64 pp., 2010 (available at \\url{http://www.wmo.int/pages/prog/www/tcp/documents/WMO_TD_1555_en.pdf})

Numerical Simulation of Floating Bodies in Extreme Free Surface Waves

NASA Astrophysics Data System (ADS)

Hu, Zheng Zheng; Causon, Derek; Mingham, Clive; Qiang, Ling

2010-05-01

A task of the EPSRC funded research project 'Extreme Wave loading on Offshore Wave Energy Devices: a Hierarchical Team Approach' is to investigate the survivability of two wave energy converter (WEC) devices Pelamis and the Manchester Bobber using different CFD approaches. Both devices float on the water surface, generating the electricity from the motion of the waves. In this paper, we describe developments of the AMAZON-SC 3D numerical wave tank (NWT) to study extreme wave loading of a fixed or floating (in Heave motion) structure. The extreme wave formulation as an inlet condition is due to Dalzell (1999) and Ning et. al. (2009) in which a first or second-order Stokes focused wave can be prescribed. The AMAZON-SC 3D code (see e.g. Hu et al. (2009)) uses a cell centred finite volume method of the Godunov-type for the space discretization of the Euler and Navier Stokes equations. The computational domain includes both air and water regions with the air/water boundary captured as a discontinuity in the density field thereby admitting the break up and recombination of the free surface. Temporal discretisation uses the artificial compressibility method and a dual time stepping strategy to maintain a divergence free velocity field. Cartesian cut cells are used to provide a fully boundary-fitted gridding capability on an regular background Cartesian grid. Solid objects are cut out of the background mesh leaving a set of irregularly shaped cells fitted to the boundary. The advantages of the cut cell approach have been outlined previously by Causon et al. (2000, 2001) including its flexibility for dealing with complex geometries whether stationary or in relative motion. The field grid does not need to be recomputed globally or even locally for moving body cases; all that is necessary is to update the local cut cell data at the body contour for as long as the motion continues. The handing of numerical wave paddles and device motion in a NWT is therefore straightforward

Double Mantle Plume Upwelling—A Possible Formation Mechanism of Beta Plateau and Devana Chasma,Venus

NASA Astrophysics Data System (ADS)

Ding, N.

2009-12-01

Ning Ding,Zuoxun Zeng,China University of Geosciences,Wuhan,430074,China NingDing.eagle@gmail.com Introduction:Venus represents a‘one plate planet’[1],and the uplift,fractures and volcanism in Beta Regio on Venus are considered to be formed by lithosphere uplift driven by a hot plume[2]. Based on the double peaking saddle landform,we suggest the tectonic pattern of double mantle plume upwelling to interpret the formation mechanism of Beta Plateau and Devana Chasma.We take a physical modeling to validate this possibility. Model:There is no ductile shear in Venus[3],so we use quartz sands to simulate the crust of Venus.We use two wood stickes 1.5cm in diameter rising from the rubber canvas slowly and straight till about half of the model,then falling down slowly and straight.The base is a hard rubber plate,in the center of which,there are two holes 3cm in diameter,and the distance between them is 5cm.The holes are covered by rubber canvas.We use the quartz sands in colours of white, red and black with particle size of 70 mess as the model materials. Result:Fig.1:At the beginning of the wood stickes upwelling,only fine radial cracks are formed above the upwelling from central to outside.With the upwelling continue,surface energy of the fine radial cracks increase and make the cracks unstable,finally,the fine radial cracks connect each other and form a fracture zone.And then the two mantle plume downwelling,the fracture zone is developed to form a chasma at the end. Fig.2:The four profiles all form reverse faults outside and normal faults inside.But the difference is the faults in the middle of the chasma goes deeper than others.It is the pattern of Beta Plateau where the tectonic rising is cut by Devana Chasma zone in the topographic features. Fig.3:From the tow fig., we can see two points similar:a.the elevation is high and distribution area is large around the area of two upwelling and it is high around the area of chasma,but the distribution area is small

An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

PubMed Central

2011-01-01

Background Coffee is one of the world's most important crops; it is consumed worldwide and plays a significant role in the economy of producing countries. Coffea arabica and C. canephora are responsible for 70 and 30% of commercial production, respectively. C. arabica is an allotetraploid from a recent hybridization of the diploid species, C. canephora and C. eugenioides. C. arabica has lower genetic diversity and results in a higher quality beverage than C. canephora. Research initiatives have been launched to produce genomic and transcriptomic data about Coffea spp. as a strategy to improve breeding efficiency. Results Assembling the expressed sequence tags (ESTs) of C. arabica and C. canephora produced by the Brazilian Coffee Genome Project and the Nestlé-Cornell Consortium revealed 32,007 clusters of C. arabica and 16,665 clusters of C. canephora. We detected different GC3 profiles between these species that are related to their genome structure and mating system. BLAST analysis revealed similarities between coffee and grape (Vitis vinifera) genes. Using KA/KS analysis, we identified coffee genes under purifying and positive selection. Protein domain and gene ontology analyses suggested differences between Coffea spp. data, mainly in relation to complex sugar synthases and nucleotide binding proteins. OrthoMCL was used to identify specific and prevalent coffee protein families when compared to five other plant species. Among the interesting families annotated are new cystatins, glycine-rich proteins and RALF-like peptides. Hierarchical clustering was used to independently group C. arabica and C. canephora expression clusters according to expression data extracted from EST libraries, resulting in the identification of differentially expressed genes. Based on these results, we emphasize gene annotation and discuss plant defenses, abiotic stress and cup quality-related functional categories. Conclusion We present the first comprehensive genome-wide transcript

Landscape genomics: natural selection drives the evolution of mitogenome in penguins.

PubMed

Ramos, Barbara; González-Acuña, Daniel; Loyola, David E; Johnson, Warren E; Parker, Patricia G; Massaro, Melanie; Dantas, Gisele P M; Miranda, Marcelo D; Vianna, Juliana A

2018-01-16

all penguins. In contrast, COX1 had a signature of strong negative selection. ND4 Ka/Ks ratios were highly correlated with SST (Mantel, p-value: 0.0001; GLM, p-value: 0.00001) and thus may be related to climate adaptation throughout penguin speciation. These results identify mtDNA candidate genes under selection which could be involved in broad-scale adaptations of penguins to their environment. Such knowledge may be particularly useful for developing predictive models of how these species may respond to severe climatic changes in the future.

Functional and evolutionary correlates of gene constellations in the Drosophila melanogaster genome that deviate from the stereotypical gene architecture

PubMed Central

2010-01-01

Background The biological dimensions of genes are manifold. These include genomic properties, (e.g., X/autosomal linkage, recombination) and functional properties (e.g., expression level, tissue specificity). Multiple properties, each generally of subtle influence individually, may affect the evolution of genes or merely be (auto-)correlates. Results of multidimensional analyses may reveal the relative importance of these properties on the evolution of genes, and therefore help evaluate whether these properties should be considered during analyses. While numerous properties are now considered during studies, most work still assumes the stereotypical solitary gene as commonly depicted in textbooks. Here, we investigate the Drosophila melanogaster genome to determine whether deviations from the stereotypical gene architecture correlate with other properties of genes. Results Deviations from the stereotypical gene architecture were classified as the following gene constellations: Overlapping genes were defined as those that overlap in the 5-prime, exonic, or intronic regions. Chromatin co-clustering genes were defined as genes that co-clustered within 20 kb of transcriptional territories. If this scheme is applied the stereotypical gene emerges as a rare occurrence (7.5%), slightly varied schemes yielded between ~1%-50%. Moreover, when following our scheme, paired-overlapping genes and chromatin co-clustering genes accounted for 50.1 and 42.4% of the genes analyzed, respectively. Gene constellation was a correlate of a number of functional and evolutionary properties of genes, but its statistical effect was ~1-2 orders of magnitude lower than the effects of recombination, chromosome linkage and protein function. Analysis of datasets on male reproductive proteins showed these were biased in their representation of gene constellations and evolutionary rate Ka/Ks estimates, but these biases did not overwhelm the biologically meaningful observation of high evolutionary

Second harmonic Pi2 pulsation observed near the plasmapause by the Asian-Oceanian SuperDARN radars and THEMIS satellites

NASA Astrophysics Data System (ADS)

Teramoto, M.; Nishitani, N.; Hori, T.; Devlin, J. C.; Angelopoulos, V.; Glassmeier, K.; Clausen, L.; Baumjohann, W.; Bonnell, J. W.; Mozer, F.

2012-12-01

Pi2 pulsations appear on the nightside at substorm onsets. Several studies suggested that transient Alfven waves might contribute to the excitation of Pi2 pulsations at nightside mid and high latitudes. On the other hand, fast mode waves trapped between the ionosphere and plasmapause are responsible for Pi2 pulsations at mid and low latitudes on the nightside. Using the Sweden And Britain auroral Radar Experiment (SABRE) coherent radar at auroral and sub-auroral latitudes, Yeoman et al. [1991] found that the radar could distinguish between these two types of Pi2 pulsations and suggested that the mid latitude region is the transition region of these two types of Pi2 pulsations. We report on one event of Pi2 pulsation starting at 09:12 UT on 19 August 2010 observed simultaneously by the Hokkaido (HOK), Tiger (TIG), and Unwin (UNW) SuperDARN radars and THEMIS-A, -D, -E satellites when they were located in the premidnight sector. The THEMIS satellites observed Pi2 pulsations at 13 mHz predominantly in the compressional and radial components of the magnetic field and the azimuthal component of the electric field when satellites were located at L < 5 inside the plasmasphere. These pulsations had high coherence (~1) with the H-component Pi2 pulsations at a low-latitude ground station, Kakioka (KAK: magnetic latitude 27.47; magnetic longitude 209.2 degrees). The Poynting flux indicates earthward and duskward flux of Pi2 energy. The radars observed oscillations of Doppler velocities at mid latitude while operating in themisscan mode, during which beam 4 of HOK, beam 4 of TIG, and beam 14 of UNW provide 8-s sampling data. These oscillations corresponded to approximately the east-west component of electric field in the ionosphere. Oscillations backscattered form the lower-latitude ionosphere had a predominant frequency at 13 mHz while Pi2 pulsations observed at higher latitude by the radars had predominant frequencies at both 13 and 25 mHz. The power of Doppler velocity

Detection and characterization of chicken anemia virus from commercial broiler breeder chickens

PubMed Central

Hailemariam, Zerihun; Omar, Abdul Rahman; Hair-Bejo, Mohd; Giap, Tan Ching

2008-01-01

Background Chicken anemia virus (CAV) is the causative agent of chicken infectious anemia (CIA). Study on the type of CAV isolates present and their genetic diversity, transmission to their progeny and level of protection afforded in the breeder farms is lacking in Malaysia. Hence, the present study was aimed to detect CAV from commercial broiler breeder farms and characterize CAV positive samples based on sequence and phylogenetic analysis of partial VP1 gene. Results A total of 12 CAV isolates from different commercial broiler breeder farms were isolated and characterized. Detection of CAV positive embryos by the PCR assay in the range of 40 to 100% for different farms indicated high level of occurrence of vertical transmission of viral DNA to the progeny. CAV antigen was detected in the thymus and in the bone marrow but not in spleen, liver, duodenum, ovary and oviduct by indirect immunoperoxidase staining. The 12 CAV isolates were characterized based on partial sequences of VP1 gene. Six isolates (MF1A, MF3C, M3B5, NF4A, P12B and P24A) were found to have maximum homology with previously characterized Malaysian isolate SMSC-1, four isolates (M1B1, NF3A, PYT4 and PPW4) with isolate BL-5 and the remaining two (NF1D and NF2C) have maximum homology both with isolates 3-1 and BL-5. Meanwhile, seven of the isolates with amino acid profile of 75-I, 97-L, 139-Q and 144-Q were clustered together in cluster I together with other isolates from different geographical places. The remaining five isolates with amino acid profile of 75-V, 97-M, 139-K and 144-E were grouped under cluster II. All the CAV isolates demonstrated omega values (Ka/Ks) of less than one (the values ranging from 0.07 to 0.5) suggesting the occurrence of purifying (negative) selection in all the studied isolates. Conclusion The present study showed that CAV is widespread in the studied commercial broiler breeder farms. The result also indicated the occurrence of genetic variability in local CAV isolates

Detection and characterization of chicken anemia virus from commercial broiler breeder chickens.

PubMed

Hailemariam, Zerihun; Omar, Abdul Rahman; Hair-Bejo, Mohd; Giap, Tan Ching

2008-10-27

Chicken anemia virus (CAV) is the causative agent of chicken infectious anemia (CIA). Study on the type of CAV isolates present and their genetic diversity, transmission to their progeny and level of protection afforded in the breeder farms is lacking in Malaysia. Hence, the present study was aimed to detect CAV from commercial broiler breeder farms and characterize CAV positive samples based on sequence and phylogenetic analysis of partial VP1 gene. A total of 12 CAV isolates from different commercial broiler breeder farms were isolated and characterized. Detection of CAV positive embryos by the PCR assay in the range of 40 to 100% for different farms indicated high level of occurrence of vertical transmission of viral DNA to the progeny. CAV antigen was detected in the thymus and in the bone marrow but not in spleen, liver, duodenum, ovary and oviduct by indirect immunoperoxidase staining. The 12 CAV isolates were characterized based on partial sequences of VP1 gene. Six isolates (MF1A, MF3C, M3B5, NF4A, P12B and P24A) were found to have maximum homology with previously characterized Malaysian isolate SMSC-1, four isolates (M1B1, NF3A, PYT4 and PPW4) with isolate BL-5 and the remaining two (NF1D and NF2C) have maximum homology both with isolates 3-1 and BL-5. Meanwhile, seven of the isolates with amino acid profile of 75-I, 97-L, 139-Q and 144-Q were clustered together in cluster I together with other isolates from different geographical places. The remaining five isolates with amino acid profile of 75-V, 97-M, 139-K and 144-E were grouped under cluster II. All the CAV isolates demonstrated omega values (Ka/Ks) of less than one (the values ranging from 0.07 to 0.5) suggesting the occurrence of purifying (negative) selection in all the studied isolates. The present study showed that CAV is widespread in the studied commercial broiler breeder farms. The result also indicated the occurrence of genetic variability in local CAV isolates that can be divided at least

Genome-wide characterization of JASMONATE-ZIM DOMAIN transcription repressors in wheat (Triticum aestivum L.).

PubMed

Wang, Yukun; Qiao, Linyi; Bai, Jianfang; Wang, Peng; Duan, Wenjing; Yuan, Shaohua; Yuan, Guoliang; Zhang, Fengting; Zhang, Liping; Zhao, Changping

2017-02-13

The JASMONATE-ZIM DOMAIN (JAZ) repressor family proteins are jasmonate co-receptors and transcriptional repressor in jasmonic acid (JA) signaling pathway, and they play important roles in regulating the growth and development of plants. Recently, more and more researches on JAZ gene family are reported in many plants. Although the genome sequencing of common wheat (Triticum aestivum L.) and its relatives is complete, our knowledge about this gene family remains vacant. Fourteen JAZ genes were identified in the wheat genome. Structural analysis revealed that the TaJAZ proteins in wheat were as conserved as those in other plants, but had structural characteristics. By phylogenetic analysis, all JAZ proteins from wheat and other plants were clustered into 11 sub-groups (G1-G11), and TaJAZ proteins shared a high degree of similarity with some JAZ proteins from Aegliops tauschii, Brachypodium distachyon and Oryza sativa. The Ka/Ks ratios of TaJAZ genes ranged from 0.0016 to 0.6973, suggesting that the TaJAZ family had undergone purifying selection in wheat. Gene expression patterns obtained by quantitative real-time PCR (qRT-PCR) revealed differential temporal and spatial regulation of TaJAZ genes under multifarious abiotic stress treatments of high salinity, drought, cold and phytohormone. Among these, TaJAZ7, 8 and 12 were specifically expressed in the anther tissues of the thermosensitive genic male sterile (TGMS) wheat line BS366 and normal control wheat line Jing411. Compared with the gene expression patterns in the normal wheat line Jing411, TaJAZ7, 8 and 12 had different expression patterns in abnormally dehiscent anthers of BS366 at the heading stage 6, suggesting that specific up- or down-regulation of these genes might be associated with the abnormal anther dehiscence in TGMS wheat line. This study analyzed the size and composition of the JAZ gene family in wheat, and investigated stress responsive and differential tissue-specific expression profiles of each

[Low-temperature response and cold tolerance at spike differentiation stage of winter wheat varieties sowed in spring].

PubMed

Xu, Lan; Gao, Zhi-fiang; An, Wei; Yuan, Ya-qi; Li, Yan-liang

2015-06-01

A total of 10 winter wheat varieties were imported from the middle and lower reaches of the Yangtze River region in China. Those varieties were sowed in spring in Xinding basin area of Shanxi Province, and the field trials were performed for two years (2013-2014). The traits and physiological characteristics under low temperature stress including grain yield, total content of chlorophyll, osmotic adjustment, membrane system, ion leakage rate, contents of soluble sugar and soluble protein were investigated, and the cold tolerance levels of the wheat varieties were assessed. The results showed that low temperature stress led to increases in wheat leaf ion leakage rate, soluble sugar and protein contents, but obvious reduction of chlorophyll content. According to principal component analysis and cold tolerance (D value) , Yumai 10, Yangmai 20, and Yunmai 42 were classed as cold sensitive wheat varieties. Yangmai 13, Yumai 12, and Ningmai 13 were classed as stronger cold-resistant wheat genotypes, and showed stability through two-year field trials, with the D values being 0.665-0.659, 0.493-0.495, and 0.471-0.583, respectively, while the D values for the controls Ning 2038 and Xinchun 30 were 0.368-0.397, and 0.328-0.330, respectively. The grain yields of the cold resistant wheat varieties were significantly higher than that of the other varieties tested. Therefore, Yangmai 13, Yumai 12 and Ningmai 13 could be imported and used as the cold tolerant wheat varieties for North Plain of China.

Association Analysis of Grain-setting Rates in Apical and Basal Spikelets in Bread Wheat (Triticum aestivum L.).

PubMed

Guo, Jie; Zhang, Yong; Shi, Weiping; Zhang, Boqiao; Zhang, Jingjuan; Xu, Yanhao; Cheng, Xiaoming; Cheng, Kai; Zhang, Xueyong; Hao, Chenyang; Cheng, Shunhe

2015-01-01

The rates of grain-setting in apical and basal spikelets in wheat directly affect the kernel number per spike (KNPS). In this study, 220 wheat lines from 18 Chinese provinces and five foreign countries were used as a natural population. Phenotypic analysis showed differences in grain-setting rates between apical and basal spikelets. The broad-sense heritability of grain-setting rate in apical spikelets (18.7-21.0%) was higher than that for basal spikelets (9.4-16.4%). Significant correlations were found between KNPS and grain numbers in apical (R (2) = 0.40-0.45, P < 0.01) and basal (R (2) = 0.41-0.56, P < 0.01) spikelets. Seventy two of 106 SSR markers were associated with grain setting, 32 for apical spikelets, and 34 for basal spikelets. The SSR loci were located on 17 chromosomes, except 3A, 3D, 4A, and 7D, and explained 3.7-22.9% of the phenotypic variance. Four markers, Xcfa2153-1A 202 , Xgwm186-5A 118 , Xgwm156-3B 319 , and Xgwm537-7B 210 , showed the largest effects on grain numbers in apical and basal spikelets. High grain numbers in apical and basal spikelets were associated with elite alleles. Ningmai 9, Ning 0569, and Yangmai 18 with high grain-setting rates carried larger numbers of favorable alleles. Comparison of grain numbers in basal and apical spikelets of 35 Yangmai and Ningmai lines indicated that the Ningmai lines had better grain-setting rates (mean 21.4) than the Yangmai lines (16.5).

Planning and Analysis of Fractured Rock Injection Tests in the Cerro Brillador Underground Laboratory, Northern Chile

NASA Astrophysics Data System (ADS)

Fairley, J. P., Jr.; Oyarzún L, R.; Villegas, G.

2015-12-01

Early theories of fluid migration in unsaturated fractured rock hypothesized that matrix suction would dominate flow up to the point of matrix saturation. However, experiments in underground laboratories such as the ESF (Yucca Mountain, NV) have demonstrated that liquid water can migrate significant distances through fractures in an unsaturated porous medium, suggesting limited interaction between fractures and unsaturated matrix blocks and potentially rapid transmission of recharge to the sat- urated zone. Determining the conditions under which this rapid recharge may take place is an important factor in understanding deep percolation processes in arid areas with thick unsaturated zones. As part of an on-going, Fondecyt-funded project (award 11150587) to study mountain block hydrological processes in arid regions, we are plan- ning a series of in-situ fracture flow injection tests in the Cerro Brillador/Mina Escuela, an underground laboratory and teaching facility belonging to the Universidad la Serena, Chile. Planning for the tests is based on an analytical model and curve-matching method, originally developed to evaluate data from injection tests at Yucca Mountain (Fairley, J.P., 2010, WRR 46:W08542), that uses a known rate of liquid injection to a fracture (for example, from a packed-off section of borehole) and the observed rate of seepage discharging from the fracture to estimate effective fracture aperture, matrix sorptivity, fracture/matrix flow partitioning, and the wetted fracture/matrix interac- tion area between the injection and recovery points. We briefly review the analytical approach and its application to test planning and analysis, and describe the proposed tests and their goals.

Study on differentiation during embryonic development across selective and ancestral breeds.

PubMed

An, Fengli; Wang, Jianlin

2017-06-01

In order to explore the effect of strain on diverging post-hatch muscle properties, muscle regulation during embryo development was investigated in selected and unselected breeds. Four broiler strains were used: JingNing (JN) chicken (a Chinese native chicken), HuangYu (HY) broiler, BaiYu (BY) broiler and Hyline layer (commercial crossbred chickens). Results showed that the four breeds had almost the same characteristic during different incubation periods. BY broilers moved more than JN and Hyline layers from Hamburger & Hamilton stage (HH)24 to HH31 (P < 0.05). HY broilers moved more than JN and Hyline layers from HH27 to HH31 (P < 0.01). All the embryos were heavier daily from HH24 to ED18 (P < 0.05); broilers presented greater body weights than JN and hyline layers (P > 0.05); broilers presented smaller fiber diameter than JN chickens before HH31 (P > 0.05). From then on, JN chicken exhibited smaller fiber diameter compared to the broilers (P > 0.05). Western blotting indicated all the breeds had continuous insulin-like growth factor-I (IGF-I) expression, with the highest expression level in broilers from HH19 to HH24 and highest expression level in JN chicks from HH27 to HH31. The results indicated that the diverging growth among breeds was already shown in embryonic stages; the different expression patterns of IGF-I may be involved in cell proliferation and differentiation. © 2016 Japanese Society of Animal Science.

Accrual and recruitment practices at Clinical and Translational Science Award (CTSA) institutions: a call for expectations, expertise, and evaluation.

PubMed

Kost, Rhonda G; Mervin-Blake, Sabrena; Hallarn, Rose; Rathmann, Charles; Kolb, H Robert; Himmelfarb, Cheryl Dennison; D'Agostino, Toni; Rubinstein, Eric P; Dozier, Ann M; Schuff, Kathryn G

2014-08-01

To respond to increased public and programmatic demand to address underenrollment of clinical translational research studies, the authors examined participant recruitment practices at Clinical and Translational Science Award (CTSA) sites and make recommendations for performance metrics and accountability. The CTSA Recruitment and Retention taskforce in 2010 invited representatives at 46 CTSAs to complete an online 48-question survey querying accrual and recruitment outcomes, practices, evaluation methods, policies, and perceived gaps in related knowledge/practice. Descriptive statistical and thematic analyses were conducted. Forty-six respondents representing 44 CTSAs completed the survey. Recruitment conducted by study teams was the most common practice reported (78%-91%, by study type); 39% reported their institution offered recruitment services to investigators. Respondents valued study feasibility assessment as a successful practice (39%); desired additional resources included feasibility assessments (49%) and participant registries (44%). None reported their institution systematically required justification of feasibility; some indicated relevant information was considered prior to institutional review board (IRB) review (30%) or contract approval (22%). All respondents' IRBs tracked study progress, but only 10% of respondents could report outcome data for timely accrual. Few reported written policies addressing poor accrual or provided data to support recruitment practice effectiveness. Many CTSAs lack the necessary frame work to support study accrual. Recom men dations to enhance accrual include articulating institutional expectations and policy for routine recruitment plan ning; providing recruitment expertise to inform feasibility assessment and recruit ment planning; and developing interdepartmental coordination and integrated informatics infrastructure to drive the conduct, evaluation, and improvement of recruitment practices.

Evaluation of the safety performance of highway alignments based on fault tree analysis and safety boundaries.

PubMed

Chen, Yikai; Wang, Kai; Xu, Chengcheng; Shi, Qin; He, Jie; Li, Peiqing; Shi, Ting

2018-05-19

To overcome the limitations of previous highway alignment safety evaluation methods, this article presents a highway alignment safety evaluation method based on fault tree analysis (FTA) and the characteristics of vehicle safety boundaries, within the framework of dynamic modeling of the driver-vehicle-road system. Approaches for categorizing the vehicle failure modes while driving on highways and the corresponding safety boundaries were comprehensively investigated based on vehicle system dynamics theory. Then, an overall crash probability model was formulated based on FTA considering the risks of 3 failure modes: losing steering capability, losing track-holding capability, and rear-end collision. The proposed method was implemented on a highway segment between Bengbu and Nanjing in China. A driver-vehicle-road multibody dynamics model was developed based on the 3D alignments of the Bengbu to Nanjing section of Ning-Luo expressway using Carsim, and the dynamics indices, such as sideslip angle and, yaw rate were obtained. Then, the average crash probability of each road section was calculated with a fixed-length method. Finally, the average crash probability was validated against the crash frequency per kilometer to demonstrate the accuracy of the proposed method. The results of the regression analysis and correlation analysis indicated good consistency between the results of the safety evaluation and the crash data and that it outperformed the safety evaluation methods used in previous studies. The proposed method has the potential to be used in practical engineering applications to identify crash-prone locations and alignment deficiencies on highways in the planning and design phases, as well as those in service.

Comparing dried and liquid blood serum samples of depressed patients: An analysis by Raman and infrared spectroscopy methods.

PubMed

Depciuch, J; Parlinska-Wojtan, M

2018-02-20

Depression is a serious mental illness. To study the mechanism of depression and search for new, more effective therapies, animal models are often used. Unfortunately, none of the available models reflects all the symptoms of depression. Therefore researchers are looking for new tools to diagnose depression. Unfortunately, the nowadays-available depression diagnosis methods are only psychological tests. However, it is known, that the amount of phospholipids, proteins and lipids decreases during depression. Raman and FTIR (Fourier Transform Infra Red) spectroscopies provide information on the chemical compounds in the measured sample e.g. blood serum. These spectroscopic techniques may thus become reliable and accurate tools for evaluating changes in the amount of phospholipids and proteins in depression disease. In this study differences between dried and liquid blood serum samples of healthy and depressed individuals measured by Raman (range 0-3000cm -1 ) and FTIR (Fourier Transform Infrared) (range 900-3000cm -1 ) spectroscopy were evaluated. The resulting spectra and accurate analysis led to the conclusion that an appropriate measurement of the background and the elimination of peaks from water had the greatest impact on the reliability of the results. Furthermore, after detailed studies of FTIR and Raman spectra of dried and liquid blood serum samples, including a complete analysis of peaks after Kramers-Kröning (KK) transformation, it was found that the sample preparation did not affect the results obtained by Raman spectroscopy. In FTIR measurements only a minimal effect on peak intensity was observed. Copyright © 2017 Elsevier B.V. All rights reserved.

Areal and Temporal Analysis of Precipitation Patterns In Slovakia Using Spectral Analysis

NASA Astrophysics Data System (ADS)

Pishvaei, M. R.

Harmonic analysis as an objective method of precipitation seasonality studying is ap- plied to the 1901-2000 monthly precipitation averages at five stations in the low-land part of Slovakia with elevation less than 800 m a.s.l. The significant harmonics of long-term precipitation series have been separately computed for eight 30-year peri- ods, which cover the 20th century and some properties and the variations are com- pared to 100-year monthly precipitation averages. The selected results show that the first and the second harmonics pre-dominantly influence on the annual distribution and climatic seasonal regimes of pre-cipitation that contribute to the precipitation am- plitude/pattern with about 20% and 10%, respectively. These indicate annual and half year variations. The rest harmon-ics often have each less than 5% contribution on the Fourier interpolation course. Maximum in yearly precipitation course, which oc- curs approximately at the begin-ning of July, because of phase changing shifts then to the middle of June. Some probable reasons regarding to Fourier components are discussed. In addition, a tem-poral analysis over precipitation time series belonging to the Hurbanovo Observa-tory as the longest observational series on the territory of Slovakia (with 130-year precipitation records) has been individually performed and possible meteorological factors responsible for the observed patterns are suggested. A comparison of annual precipitation course obtained from daily precipitation totals analysis and polynomial trends with Fourier interpolation has been done too. Daily precipitation data in the latest period are compared for some stations in Slovakia as well. Only selected results are pre-sented in the poster.

Crosstalk between immune cells and mesenchymal stromal cells in a 3D bioreactor system.

PubMed

Seifert, Martina; Lubitz, Annika; Trommer, Jeanne; Könnig, Darja; Korus, Gabriela; Marx, Uwe; Volk, Hans-Dieter; Duda, Georg; Kasper, Grit; Lehmann, Kerstin; Stolk, Meaghan; Giese, Christoph

2012-11-01

Mesenchymal stromal cells (MSC), known for their high immune modulatory capacity are promising tools for several cell-based therapies. To better mimic the in vivo situation of MSC interactions with immune cells, we applied an artificial lymph node (ALN)-bioreactor culture system combining a miniaturized perfusion bioreactor with a 3D matrix-based cell culture of immune competent cells forming micro-organoids. Rat lymph node cells and allogeneic bone marrow-derived MSCs were seeded in a 20:1 ratio within the agarose matrix of the ALN-reactor. Lymphocytes were pre-incubated with Concanavalin A (ConA) and then co-cultured with MSC in the matrix with additional ConA in the perfusing medium. Live/dead staining showed survival of the co-cultures during the 8-day ALN-reactor run. Paraffin sections of bioreactor matrices were analyzed by proliferating cell nuclear antigen (PCNA)-specific stai-ning to determine MSC proliferation. Immune modulatory capacity was defined by daily analysis of cytokine secretion profiles (TNFa, IFNy, IL-1a, IL-1ß, IL-2, IL-4, IL-6, IL-10, IL-12p40/p70, GM-CSF). Cytokine peak secretion at day 2 was significantly inhibited by MSCs for TNFa (96.8 ± 4.8%) and IFNy (88.7 ± 12.0%) in 3D co-cultures. In contrast, other cytokines (IL-1, IL-6, IL-12) were induced. Furthermore, we detected a significantly higher (58.8%) fraction of proliferating MSCs in the presence of immune cells compared to control bioreactors loaded with MSCs only. In the future, this system might be an excellent tool to investigate the mechanisms of MSC-mediated immune modulation during simulated in vivo conditions.

Climate change effects on extreme flows of water supply area in Istanbul: utility of regional climate models and downscaling method.

PubMed

Kara, Fatih; Yucel, Ismail

2015-09-01

This study investigates the climate change impact on the changes of mean and extreme flows under current and future climate conditions in the Omerli Basin of Istanbul, Turkey. The 15 regional climate model output from the EU-ENSEMBLES project and a downscaling method based on local implications from geophysical variables were used for the comparative analyses. Automated calibration algorithm is used to optimize the parameters of Hydrologiska Byråns Vattenbalansavdel-ning (HBV) model for the study catchment using observed daily temperature and precipitation. The calibrated HBV model was implemented to simulate daily flows using precipitation and temperature data from climate models with and without downscaling method for reference (1960-1990) and scenario (2071-2100) periods. Flood indices were derived from daily flows, and their changes throughout the four seasons and year were evaluated by comparing their values derived from simulations corresponding to the current and future climate. All climate models strongly underestimate precipitation while downscaling improves their underestimation feature particularly for extreme events. Depending on precipitation input from climate models with and without downscaling the HBV also significantly underestimates daily mean and extreme flows through all seasons. However, this underestimation feature is importantly improved for all seasons especially for spring and winter through the use of downscaled inputs. Changes in extreme flows from reference to future increased for the winter and spring and decreased for the fall and summer seasons. These changes were more significant with downscaling inputs. With respect to current time, higher flow magnitudes for given return periods will be experienced in the future and hence, in the planning of the Omerli reservoir, the effective storage and water use should be sustained.

Cigarette smoke-induced Egr-1 upregulates proinflammatory cytokines in pulmonary epithelial cells.

PubMed

Reynolds, Paul R; Cosio, Manuel G; Hoidal, John R

2006-09-01

Chronic obstructive pulmonary disease (COPD) is the fourth leading cause of death worldwide and is a progressive and irreversible disorder. Cigarette smoking is associated with 80-90% of COPD cases; however, the genes involved in COPD-associated emphysema and chronic inflammation are poorly understood. It was recently demonstrated that early growth response gene 1 (Egr-1) is significantly upregulated in the lungs of smokers with COPD (Ning W and coworkers, Proc Natl Acad Sci 2004;101:14895-14900). We hypothesized that Egr-1 is activated in pulmonary epithelial cells during exposure to cigarette smoke extract (CSE). Using immunohistochemistry, we demonstrated that pulmonary adenocarcinoma cells (A-549) and primary epithelial cells lacking basal Egr-1 markedly induce Egr-1 expression after CSE exposure. To evaluate Egr-1-specific effects, we used antisense (alphaS) oligodeoxynucleotides (ODN) to knock down Egr-1 expression. Incorporation of Egr-1 alphaS ODN significantly decreased CSE-induced Egr-1 mRNA and protein, while sense ODN had no effect. Via Egr-1-mediated mechanisms, IL-1beta and TNF-alpha were significantly upregulated in pulmonary epithelial cells exposed to CSE or transfected with Egr-1. To investigate the relationship between Egr-1 induction by smoking and susceptibility to emphysema, we determined Egr-1 expression in strains of mice with different susceptibilities for the development of smoking-induced emphysema. Egr-1 was markedly increased in the lungs of emphysema-susceptible AKR/J mice chronically exposed to cigarette smoke, but only minimally increased in resistant NZWLac/J mice. In conclusion, Egr-1 is induced by cigarette smoke and functions in proinflammatory mechanisms that likely contribute to the development of COPD in the lungs of smokers.

Observational Study of Particle Acceleration in the 2006 December 13 Flare

NASA Astrophysics Data System (ADS)

Minoshima, T.; Morimoto, T.; Kawate, T.; Imada, S.; Koshiishi, H.; Masuda, S.; Kubo, M.; Inoue, S.; Isobe, H.; Krucker, S.; Yokoyama, T.

2008-12-01

We study the particle acceleration in a flare on 2006 December 13, by using the Hinode, RHESSI, Nobeyama Radio Polarimeters (NoRP) and Nobeyama Radioheliograph (NoRH) observations. For technical reasons, both RHESSI and NoRH have a problem in imaging in this flare. Since we have succeeded in solving the problem, it is now possible to discuss the particle acceleration mechanism from an image analysis. This flare shows very long-lasting (1 hour) non-thermal emissions, consisting of many spikes. We focus on the second major spike at 02:29 UT, because the RHESSI image is available only in this period. The RHESSI 35-100 keV HXR image shows double sources located at the footpoints of the western soft X-ray (SXR) loop seen by the Hinode/XRT. The non-linear force-free (NLFF) modeling based on a magnetogram data by Inoue et al. shows the NLFF to potential magnetic transition of the loop, which would induce the electric field and then accelerate particles. Overlaying the HXR image on the photospheric three-dimensional magnetic field map taken by the Hinode Spectro-Polarimeter, we find that the HXR sources are located at the region where the horizontal magnetic fields invert. The NoRH 34 GHz microwave images show the loop structure connecting the HXR sources. The microwave peaks do not located at the top of the loop but between the loop top and the footpoints. The NoRP microwave spectrum shows the soft-hard-soft pattern in the period, same as the HXR spectrum (Ning 2008). From these observational results we suggest that the electrons were accelerated parallel to the magnetic field line near the magnetic separatrix.

Bamboo vs. crops: an integrated emergy and economic evaluation of using bamboo to replace crops in south Sichuan Province, China.

PubMed

Lu, Hong-Fang; Cai, Chun-Ju; Zeng, Xian-Shu; Campbell, Daniel E; Fan, Shao-Hui; Liu, Guang-Lu

2018-03-10

Based on long-term monitoring conducted in Chang-ning county, a pilot site of the 'Grain for Green Program' (GFGP), an integrated emergy and economic method was applied to evaluate the dynamic ecological-economic performance of 3 kinds of bamboo systems planted on sloping farmland. The results confirmed the positive effects of all 3 kinds of bamboo systems on water conservation and soil erosion control. The benefits gained progressively increased during the first 8 years after conversion, going from 4639 to 16127 EMyuan/ha/yr on average. All three bamboo plantations were much more sustainable than common agricultural crops planted on sloping land (CP) on both the short and long-term scales with their Emergy Sustainability Index (ESI) and Emergy Index for Sustainable Development (EISD), respectively, being 14.07-325.71 and 80.35-265.80 times that of CP. However, all 3 bamboo plantations had a Net Economic Benefit (NEB) less than that of CP during the first 8 years after conversion. Even with the government-mandated ecological compensation applied, the annual NEB EC s of the Bambusa rigida (BR) and Phyllostachys pubescense (PP) plantations were, respectively, 3922.03 and 7422.77 yuan/ha/yr lower than the NEB of CP. Emergy-based evaluation of ecosystem services provides an objective reference for applying ecological compensation in strategy-making, but it cannot wholly solve the economic viability problem faced by all bamboo plantations. Inter-planting annual herbs or edible fungus, such as Dictyophora echinovolvata , within bamboo forests, especially in young bamboo plantations, might be a direction for optimizing bamboo cultivation that would improve its economic viability.

Perceived family perceptions of breastfeeding and Chinese new mothers' breastfeeding behaviors.

PubMed

Lu, Hong; Li, Hongyan; Ma, Shuqin; Xia, Lijuan; Christensson, Kyllike

2011-11-01

To provide an understanding of Chinese new mothers' breastfeeding behaviors and especially to explore the relationship between the mothers perceived family perception about breastfeeding and the new mothers' breastfeeding behaviors. A cross-sectional questionnaire survey was conducted in Beijing and Yinchuan, the capital of Ning Xia Province, China. 214 new mothers with a baby at the age of 4 months were recruited to the study. The family perception of breastfeeding scale and the new mothers' breastfeeding behavior record were used. The response rate was n=200, 94%. Most of the new mothers perceived positive family perceptions about breastfeeding with an average score of 23.13 using the family perception of breastfeeding scale. Nearly half of the respondents reported that they exclusively breastfed their infants (n=94, 47%). The main reason for breastfeeding difficulty was inadequate lactation (n=56, 69%). The new mothers who breastfed their infants mentioned significantly stronger family perceptions/support compared to those who used mixed feeding or artificial feeding (p<0.001). There were no significant differences (p>0.05) in the types of mothers' feeding behaviors across the different age group, occupation, ethnicity, educational level, mode of delivery, the time of the baby's first suck, bottle feeding before the baby's first suck and the time of having colostrums. It is suggested to develop some strategies, such as family-centered antenatal and postnatal education programmes, to increase the rate of exclusive breastfeeding by influencing new mothers' families about breastfeeding. Further research is needed to explore socio-demographic variables associated with new-mothers' breastfeeding behaviors. Copyright © 2011 Elsevier B.V. All rights reserved.

Effect of Duration of Irrigation with Sodium Hypochlorite in Clinical Protocol of MTAD on Removal of Smear Layer and Creating Dentinal Erosion

PubMed Central

Lotfi, Mehrdad; Moghaddam, Negar; Vosoughhosseini, Sepideh; Zand, Vahid; Saghiri, Mohammad Ali

2012-01-01

Background and aims The aim of the present study was to compare 1.3% sodium hypochlorite (NaOCl) in MTAD (mixture of tetracycline isomer, acid, and detergent) for the removal of the smear layer and induction of canal erosion. Materials and methods 38 maxillary incisors were divided in three experimental groups of 10 and two positive and negative control groups of each 4 teeth, and prepared using rotary files. In test groups, 1.3% NaOCl was used for 5, 10 and 20 minutes during preparation followed by MTAD as the final rinse. In negative control group, 5.25% NaOCl was used for 10 minutes followed by 17% Ethylenediamine Tetra-Acetic Acid (EDTA) as the final rinse. In positive control group, dis-tilled water was used for 10 minutes during preparation and then as the final rinse. The samples were examined under scan-ning electron microscope, and the smear layer and dentinal erosion scores were recorded. Results Five and 10 min groups had significant differences with 20 min group (p < 0.05). In apical third, 5 and 10 min groups had also significant differences with 20 min (p < 0.05). In the coronal thirds, when the time of irrigation with 1.3% NaOCl increased from 5 min to 20 min, erosion also increased significantly. However, 5 and 10 min groups had no signifi-cant differences with negative control group. Conclusion The use of 1.3% sodium hypochlorite for 5 and 10 minutes in the MTAD protocol removes the smear layer in the coronal and middle thirds but does not induce erosion. PMID:22991642

Kinetics and mechanism of S-nitrosothiol acid-catalyzed hydrolysis: sulfur activation promotes facile NO+ release.

PubMed

Moran, Ernesto E; Timerghazin, Qadir K; Kwong, Elizabeth; English, Ann M

2011-03-31

The denitrosation of three primary S-nitrosothiols (RSNO; S-nitrosocysteine, S-nitroso-N-acetylcysteine, and S-nitrosoglutathione) and two tertiary RSNOs (S-nitrosopenicillamine and S-nitroso-N-acetylpenicillamine) was investigated in 3.75 M H(2)SO(4) to probe the mechanism of acid-catalyzed RSNO hydrolysis and its dependence on RSNO structure. This reversible reaction was forced to proceed in the denitrosation direction by trapping the nitrosating agent with HN(3). The primary RSNOs exhibited hydrolysis k(obs) values of ∼2 × 10(-4) s(-1), and the tertiary RSNO k(obs) values were an order of magnitude higher. Product analysis by HPLC revealed that the parent thiols (RSHs) were formed in 90-100% yield on 79-99% RSNO denitrosation. Possible hydrolysis mechanisms were studied computationally at the CBS-QB3 level using S-nitrosomethanethiol (MeSNO) as a model RSNO. Consideration of RSNOs as a combination of conventional R-S-N═O, zwitterionic R-S(+)═N-O(-), and RS(-)/NO(+) ion-pair resonance structures was key in understanding the mechanistic details of acid-catalyzed hydrolysis. Protonation of the S-nitroso oxygen or nitrogen activates the sulfur and nucleophilic attack by H(2)O at this atom leads to the formation of the sulfoxide-protonated N-hydroxysulfinamide, MeS(+)(OH)NHOH, with barriers of 19 and 29 kcal/mol, respectively. Proton loss and reprotonation at the nitrogen lead to secondary hydrolysis that produces the sulfinic acid MeS(═O)OH and NH(2)OH. Notably, no low-energy RSNO hydrolysis pathway for HNO release was found in the computational analysis. Protonation of the S-nitroso sulfur gives rise to NO(+) release with a low activation barrier (ΔH(double dagger)(calc) ≈ 6 kcal/mol) and the formation of MeSH in agreement with experiment. The experimental k(obs) can be expressed as K(a)k(1), where K(a) is the acid dissociation constant for protonation of the S-nitroso sulfur and k(1) the pseudo-first-order hydrolysis rate constant. Given the low �

Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae.

PubMed

Redwan, R M; Saidin, A; Kumar, S V

2015-08-12

Pineapple (Ananas comosus var. comosus) is known as the king of fruits for its crown and is the third most important tropical fruit after banana and citrus. The plant, which is indigenous to South America, is the most important species in the Bromeliaceae family and is largely traded for fresh fruit consumption. Here, we report the complete chloroplast sequence of the MD-2 pineapple that was sequenced using the PacBio sequencing technology. In this study, the high error rate of PacBio long sequence reads of A. comosus's total genomic DNA were improved by leveraging on the high accuracy but short Illumina reads for error-correction via the latest error correction module from Novocraft. Error corrected long PacBio reads were assembled by using a single tool to produce a contig representing the pineapple chloroplast genome. The genome of 159,636 bp in length is featured with the conserved quadripartite structure of chloroplast containing a large single copy region (LSC) with a size of 87,482 bp, a small single copy region (SSC) with a size of 18,622 bp and two inverted repeat regions (IRA and IRB) each with the size of 26,766 bp. Overall, the genome contained 117 unique coding regions and 30 were repeated in the IR region with its genes contents, structure and arrangement similar to its sister taxon, Typha latifolia. A total of 35 repeats structure were detected in both the coding and non-coding regions with a majority being tandem repeats. In addition, 205 SSRs were detected in the genome with six protein-coding genes contained more than two SSRs. Comparative chloroplast genomes from the subclass Commelinidae revealed a conservative protein coding gene albeit located in a highly divergence region. Analysis of selection pressure on protein-coding genes using Ka/Ks ratio showed significant positive selection exerted on the rps7 gene of the pineapple chloroplast with P less than 0.05. Phylogenetic analysis confirmed the recent taxonomical relation among the member of

Unidata Workshop: Demonstrating Democratization of Numerical Weather Prediction Capabilities Using Linked Environments for Atmospheric Discovery (LEAD) Capabilities

NASA Astrophysics Data System (ADS)

Baltzer, T.; Wilson, A.; Marru, S.; Rossi, A.; Christi, M.; Hampton, S.; Gannon, D.; Alameda, J.; Ramamurthy, M.; Droegemeier, K.

2006-12-01

On July 13th 2006 during the triannual Unidata Workshop, members of the Unidata community got their first experience with capabilities being developed under the Linked Environments for Atmospheric Discovery (LEAD) project (see: http://lead.ou.edu). The key LEAD goal demonstrated during the workshop was that of "Democratization," that is, providing capabilities that typically have a high barrier to entry to the larger meteorological community. At the workshop, participants worked with software that demonstrated the specific concepts of: 1) Lowering the barrier to entry by making it easy for users to: - Experiment using meteorological tools - Create meteorological forecasts - Perform mesoscale modeling and forecasting - Access data (source and product) - Make use of large scale cyberinfrastructure (E.g. TeraGrid) 2) Giving users the freedom from technological issues such as: - Hassle-free access to supercomputing resources - Hassle-free execution of forecast models and related tools - Data format independence This talk will overview the capabilities presented to the Unidata workshop participants as well as capabilities developed since the workshop. There will also be a lessons-learned section. This overview will be accomplished with a live demonstration of some of the capabilities. Capabilities that will be discussed and demonstrated have applicability across many disciplines e.g. discovering, acquiring and using data and orchestrating of complex workflow. Acknowledgement: The LEAD project involves the work of nearly 100 individuals whose dedication has resulted in the capabilities that will be shown here. The authors would like to recognize all of them, but in particular we'd like to recognize: John Caron, Rich Clark, Ethan Davis, Charles Hart, Yuan Ho, Scott Jenson, Rob Kambic, Brian Kelly, Ning Liu, Jeff McWhirter, Don Murray, Beth Plale, Rahul Ramachandran, Yogesh Simmhan, Kevin Thomas, Nithya Vijayakumar, Yunheng Wang, Dan Weber, and Bob Wilhelmson.

Indirect Coupling of Magnetic Layers via Domain Wall Fringing fields

NASA Astrophysics Data System (ADS)

Parkin, Stuart

2001-03-01

Ferromagnetic films separated by thin metallic spacer layers are usually coupled through an indirect exchange interaction which oscillates in sign between ferro and antiferromagnetic coupling as a function of the spacer layer thickness^1. For both such metallic systems, and for multilayered systems in which the ferromagnetic films are separated by thin insulating layers, correlated roughness of the magnetic layers gives rise to a weak ferromagnetic coupling via dipole fields. Another type of dipolar coupling mechanism, which has largely been ignored, is that arising from domain wall fringing fields. These fields can be locally very large^2 and can result in the demagnetization of ferromagnetic films which are nominally highly coercive ("hard") in sandwiches comprised of "hard" and "soft" ferromagnetic layers. When the moment of the soft layer is reversed back and forth in small magnetic fields, much too small to affect the moment of the hard layer, substantial local fringing fields from domain walls created in the soft film gradually result in the demagnetization of the hard film. In some cases the moment of the hard layer decays in an oscillatory manner as it is successively partially demagnetized and remagnetized. This process has been observed on both macroscopic and microscopic length scales using SQUID magnetometry and high resolution photoemission electron microscopy, respectively^3. Magnetic interactions from domain wall fringing fields may be very important for magnetic devices, especially, magnetoresistance sensors and memory elements. [1] S.S.P. Parkin, N. More and K.P. Roche, Phys. Rev. Lett. 64, 2304 (1990); S.S.P. Parkin, Phys. Rev. Lett., 67, 3598 (1991). [2] L. Thomas, M. Samant and S.S.P. Parkin, Phys. Rev. Lett. 84, 1816 (2000). [3] L. Thomas, J Lüning, A. Scholl, F. Nolting, S. Anders, J. Stöhr and S.S.P. Parkin, Phys. Rev. Lett. 84, 3462 (2000).

Volume-wise destruction of the antiferromagnetic Mott insulating state through quantum tuning.

NASA Astrophysics Data System (ADS)

Uemura, Yasutomo

RENiO3 (RE = rare-earth element) and V2O3 are archetypal Mott insulator systems. When tuned by chemical substitution (RENiO3) or hydrostatic pressure (V2O3) , they exhibit a quantum phase transition (QPT) between an antiferromagnetic Mott insulating state and a paramagnetic metallic state. We demonstrate through muon spin relaxation/rotation (μSR) experiments that the QPT in RENiO3 and V2O3 is first order: the magnetically ordered volume fraction decreases to zero at the QPT, resulting in a broad region of intrinsic phase separation, while the ordered magnetic moment retains its full value until it is suddenly destroyed at the QPT. These two cases correspond to the band-width tuning of Mott transitions, and also associated with structural phase transitions, Volume evolutions of antiferromagnetic transition from μSR will be compared to those of structure by x-ray and metallicity by nano optics, in first-order thermal Mott transition in a V2O3 film at ambient pressure. These results will be compared to the process of destruction of magnetic order in another Mott transition system Ba(Co,Ni)S2 in ``filling control'' without structural transition, and in parent compounds of high-Tc cuprates and Fe-based superconductors. We will also discuss roles of first-order quantum transition in generating soft modes relevant to magnetic resonance mode in unconventional superconductors. Work performed in collaboration with the groups of: J.A. Alonso (Madrid), H. Kageyama (Kyoto). E. Morenzoni (PSI), G.M. Luke (McMaster), C.Q. Jin (IOP Beijing), F.L. Ning (Zhejian), S.J.L. Billinge (Columbia), S. Shamoto, W. Higemoto (JAEA), A. Fujimori (Tokyo), A. Gauzzi (Paris), R. de Renzi (Parma), G. Kotliar (Rutgers), M. Imada (Tokyo), D. Basov (UCSD), I, Schuller (UCSD). supported by NSF DMR-1610633 and DMR-1436095 (DMREF).

Soft-collinear supersymmetry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cohen, Timothy; Elor, Gilly; Larkoski, Andrew J.

Soft-Collinear E ective Theory (SCET) is a framework for modeling the infrared structure of theories whose long distance behavior is dominated by soft and collinear divergences. This paper demonstrates that SCET can be made compatible with supersymmetry (SUSY). Explicitly, the e ective Lagrangian for N = 1 SUSY Yang-Mills is constructed and shown to be a complete description for the infrared of this model. For contrast, we also construct the e ective Lagrangian for chiral SUSY theories with Yukawa couplings, speci cally the single avor Wess-Zumino model. Only a subset of the infrared divergences are reproduced by the Lagrangian |more » to account for the complete low energy description requires the inclusion of local operators. SCET is formulated by expanding elds along a light-like direction and then subsequently integrating out degrees-of-freedom that are away from the light-cone. De ning the theory with respect to a speci c frame obfuscates Lorentz invariance | given that SUSY is a space-time symmetry, this presents a possible obstruction. The cleanest language with which to expose the congruence between SUSY and SCET requires exploring two novel formalisms: collinear fermions as two-component Weyl spinors, and SCET in light-cone gauge. By expressing SUSY Yang- Mills in \\collinear superspace", a slice of superspace derived by integrating out half the fermionic coordinates, the light-cone gauge SUSY SCET theory can be written in terms of super elds. As a byproduct, bootstrapping up to the full theory yields the rst algorithmic approach for determining the SUSY Yang-Mills on-shell superspace action. As a result, this work paves the way toward discovering the e ective theory for the collinear limit of N = 4 SUSY Yang-Mills.« less

Neutron Monitor Observations and Space Weather, 1. Automatically Search of Great Solar Energetic Particle Event Beginning.

NASA Astrophysics Data System (ADS)

Dorman, L. I.; Pustil'Nik, L. A.; Sternlieb, A.; Zukerman, I. G.

It is well known that in periods of great SEP fluxes of energetic particles can be so big that memory of computers and other electronics in space may be destroyed, satellites and spacecrafts became dead: according to NOAA Space Weather Scales are danger- ous Solar Radiation Storms S5-extreme (flux level of particles with energy > 10 MeV more than 10^5), S4-severe (flux more than 10^4) and S3-strong (flux more than 10^3). In these periods is necessary to switch off some part of electronics for few hours to protect computer memories. These periods are also dangerous for astronauts on space- ships, and passengers and crew in commercial jets (especially during S5 storms). The problem is how to forecast exactly these dangerous phenomena. We show that exact forecast can be made by using high-energy particles (few GeV/nucleon and higher) which transportation from the Sun is characterized by much bigger diffusion coeffi- cient than for small and middle energy particles. Therefore high energy particles came from the Sun much more early (8-20 minutes after acceleration and escaping into so- lar wind) than main part of smaller energy particles caused dangerous situation for electronics (about 30-60 minutes later). We describe here principles and experience of automatically working of program "FEP-Search". The positive result which shows the exact beginning of FEP event on the Emilio Segre' Observatory (2025 m above sea level, Rc=10.8 GV), is determined now automatically by simultaneously increas- ing on 2.5 St. Dev. in two sections of neutron supermonitor. The next 1-min data the program "FEP-Search" uses for checking that the observed increase reflects the begin- ning of real great FEP or not. If yes, automatically starts to work on line the programs "FEP-Research".

Cirugía transnasal endoscópica para tumores de hipófisis

PubMed Central

Ajler, Pablo; Hem, Santiago; Goldschmidt, Ezequiel; Landriel, Federico; Campero, Alvaro; Yampolsky, Claudio; Carrizo, Antonio

2012-01-01

Introducción: Exponer la técnica utilizada y los resultados obtenidos en los primeros 52 pacientes portadores de tumores hipofisarios tratados por la vía endoscópica transnasal en el Hospital Italiano de Buenos Aires Métodos: Se llevó a cabo un análisis retrospectivo de 52 cirugías endoscópicas transnasales utilizadas en el tratamiento de tumores hipofisários. Las mismas fueron realizadas en el Hospital Italiano de Buenos Aires durante el período junio del 2011 a junio del 2012. Se analizaron las características demográficas de los pacientes, la patología de base y la morbimortalidad asociada a la cirugía. Resultados: La edad media de los pacientes fue de 41,52 años con un rango de 18-79. La distribución fue similar entre hombres y mujeres. Las patologías más frecuentes fueron: adenomas no funcionantes (40.4%), tumores productores de GH/Acromegalia (25%) y tumores productores de ACTH/Enfermedad de Cushing (23.1%). Aproximadamente el 70 % correspondieron a macroadenomas. Sólo un paciente presentó complicaciones. No se registro ningún óbito. Conclusión: Si bien podremos objetivar fehacientemente resultados más concluyentes en futuros trabajos, podemos decir a priori que, en la endoscopía el detalle anatómico es claramente superior al microscópico y que la posibilidad de la introducción del endoscopio en la silla turca permite la visualización directa de remanentes tumorales, de sitios de fístula y como así también de la glándula normal, ventajas que potencialmente podrían permitir obtener mejores resultados quirúrgicos, en términos de control de la enfermedad y tasa de complicaciones. PMID:23596553

Reconciling top-down and bottom-up estimates of CO2 fluxes to understand increased seasonal exchange in Northern ecosystems

NASA Astrophysics Data System (ADS)

Bastos, A.; Ciais, P.; Zhu, D.; Maignan, F.; Wang, X.; Chevallier, F.; Ballantyne, A.

2017-12-01

Continuous atmospheric CO2 monitoring data indicate enhanced seasonal exchange in the high-latitudes in the Northern Hemisphere (above 40oN), mainly attributed to terrestrial ecosystems. Whether this enhancement is mostly explained by increased vegetation growth due to CO2 fertilization and warming, or by changes in land-use and land-management practices is still an unsettled question (e.g. Forkel et al. (2016) and Zeng et al. (2013)). Previous studies have shown that models present variable performance in capturing trends in CO2 amplitude at CO2 monitoring sites, and that Earth System Models present large spread in their estimates of such trends. Here we integrate data of atmospheric CO2 exchange in terrestrial ecosystems by a set of atmospheric CO2 inversions and a range of land-surface models to evaluate the ability of models to reproduce changes in CO2 seasonal exchange within the observation uncertainty. We then analyze the factors that explain the model spread to understand if the trend in seasonal CO2 amplitude may indeed be a useful metric to constrain future changes in terrestrial photosynthesis (Wenzel et al., 2016). We then compare model simulations with satellite and other observation-based datasets of vegetation productivity, biomass stocks and land-cover change to test the contribution of natural (CO2 fertilization, climate) and human (land-use change) factors to the increasing trend in seasonal CO2 amplitude. Forkel, Matthias, et al. "Enhanced seasonal CO2 exchange caused by amplified plant productivity in northern ecosystems." Science 351.6274 (2016): 696-699. Wenzel, Sabrina, et al. "Projected land photosynthesis constrained by changes in the seasonal cycle of atmospheric CO2." Nature 538, no. 7626 (2016): 499-501.Zeng, Ning, et al. "Agricultural Green Revolution as a driver of increasing atmospheric CO2 seasonal amplitude." Nature 515.7527 (2014): 394.

Soft-collinear supersymmetry

DOE PAGES

Cohen, Timothy; Elor, Gilly; Larkoski, Andrew J.

2017-03-03

Soft-Collinear E ective Theory (SCET) is a framework for modeling the infrared structure of theories whose long distance behavior is dominated by soft and collinear divergences. This paper demonstrates that SCET can be made compatible with supersymmetry (SUSY). Explicitly, the e ective Lagrangian for N = 1 SUSY Yang-Mills is constructed and shown to be a complete description for the infrared of this model. For contrast, we also construct the e ective Lagrangian for chiral SUSY theories with Yukawa couplings, speci cally the single avor Wess-Zumino model. Only a subset of the infrared divergences are reproduced by the Lagrangian |more » to account for the complete low energy description requires the inclusion of local operators. SCET is formulated by expanding elds along a light-like direction and then subsequently integrating out degrees-of-freedom that are away from the light-cone. De ning the theory with respect to a speci c frame obfuscates Lorentz invariance | given that SUSY is a space-time symmetry, this presents a possible obstruction. The cleanest language with which to expose the congruence between SUSY and SCET requires exploring two novel formalisms: collinear fermions as two-component Weyl spinors, and SCET in light-cone gauge. By expressing SUSY Yang- Mills in \\collinear superspace", a slice of superspace derived by integrating out half the fermionic coordinates, the light-cone gauge SUSY SCET theory can be written in terms of super elds. As a byproduct, bootstrapping up to the full theory yields the rst algorithmic approach for determining the SUSY Yang-Mills on-shell superspace action. As a result, this work paves the way toward discovering the e ective theory for the collinear limit of N = 4 SUSY Yang-Mills.« less

Automated Information Extraction on Treatment and Prognosis for Non-Small Cell Lung Cancer Radiotherapy Patients: Clinical Study.

PubMed

Zheng, Shuai; Jabbour, Salma K; O'Reilly, Shannon E; Lu, James J; Dong, Lihua; Ding, Lijuan; Xiao, Ying; Yue, Ning; Wang, Fusheng; Zou, Wei

2018-02-01

In outcome studies of oncology patients undergoing radiation, researchers extract valuable information from medical records generated before, during, and after radiotherapy visits, such as survival data, toxicities, and complications. Clinical studies rely heavily on these data to correlate the treatment regimen with the prognosis to develop evidence-based radiation therapy paradigms. These data are available mainly in forms of narrative texts or table formats with heterogeneous vocabularies. Manual extraction of the related information from these data can be time consuming and labor intensive, which is not ideal for large studies. The objective of this study was to adapt the interactive information extraction platform Information and Data Extraction using Adaptive Learning (IDEAL-X) to extract treatment and prognosis data for patients with locally advanced or inoperable non-small cell lung cancer (NSCLC). We transformed patient treatment and prognosis documents into normalized structured forms using the IDEAL-X system for easy data navigation. The adaptive learning and user-customized controlled toxicity vocabularies were applied to extract categorized treatment and prognosis data, so as to generate structured output. In total, we extracted data from 261 treatment and prognosis documents relating to 50 patients, with overall precision and recall more than 93% and 83%, respectively. For toxicity information extractions, which are important to study patient posttreatment side effects and quality of life, the precision and recall achieved 95.7% and 94.5% respectively. The IDEAL-X system is capable of extracting study data regarding NSCLC chemoradiation patients with significant accuracy and effectiveness, and therefore can be used in large-scale radiotherapy clinical data studies. ©Shuai Zheng, Salma K Jabbour, Shannon E O'Reilly, James J Lu, Lihua Dong, Lijuan Ding, Ying Xiao, Ning Yue, Fusheng Wang, Wei Zou. Originally published in JMIR Medical Informatics (http

Comparing paraffined and deparaffinized breast cancer tissue samples and an analysis of Raman spectroscopy and infrared methods

NASA Astrophysics Data System (ADS)

Depciuch, J.; Kaznowska, E.; Szmuc, K.; Zawlik, I.; Cholewa, M.; Heraud, P.; Cebulski, J.

2016-05-01

Breast cancer makes up a quarter of all cancer in women, which is why research into new diagnostic methods and sample preparations need to be developed at an accelerated pace. Researchers are looking for diagnostic tools to detect when an individual has cancer cells and use that information to see what measurements and approaches can be used to take further diagnostic steps. The most common method of sample preparation is the imbibing of tumor tissue in paraffin, which can produce a background for spectroscopic measurements in the range of 500-3500 cm-1. In this study we demonstrated that proper preparation of paraffin-embedded specimens and the measurement methodology can eliminate paraffin vibration, as was done in the work Depciuch et al. 2015. Thanks to this spectroscopic technique there may become a reliable and accurate method of diagnosing breast cancer based on the evidence found from the prepared samples. The study compared the results obtained through Raman spectroscopy and FTIR (Fourier Transform Infrared) measurements of healthy and cancerous breast tissues that were either embedded in paraffin or deparaffinized. The resulting spectrum and accurate analysis led to the conclusion that the appropriate measurement of the background and the elimination of peaks from the paraffin had the greatest impact on the reliability of results. Furthermore, after the accurate, detailed studies FTIR and Raman spectroscopy on samples of breast tissue that were deparaffinized or embedded in paraffin, including a complete analysis of the peak after transformation Kramers-Kröning (KK), it was found that sample preparation did not affect the result obtained by measuring the reflectance in the mid-infrared range, and that this only had a minimal effect relating to the intensity obtained by the measurement of the Raman peak. Only in special cases, when Raman spectroscopic methods are used for research to find the peculiarities of the spectra, are deparaffinization recommended

Migration and spawning of radio-tagged zulega Prochilodus argenteus in a dammed Brazilian river

USGS Publications Warehouse

Godinho, Alexandre L.; Kynard, B.

2006-01-01

It is difficult for agencies to evaluate the impacts of the many planned dams on Sa??o Francisco River, Brazil, migratory fishes because fish migrations are poorly known. We conducted a study on zulega Prochilodus argenteus, an important commercial and recreational fish in the Sa??o Francisco River, to identify migrations and spawning areas and to determine linear home range. During two spawning seasons (2001-2003), we radio-tagged fish in three main-stem reaches downstream of Tre??s Marias Dam (TMD), located at river kilometer (rkm) 2,109. We tagged 10 fish at Tre??s Marias (TM), which is 5 km downstream of TMD; 12 fish at Pontal, which is 28 km downstream of TMD and which includes the mouth of the Abaete?? River, and 10 fish at Cilga, which is 45 km downstream of TMD. Late-stage (ripe) adults tagged in each area during the spawning season remained at or near the tagging site, except for four Cilga fish that went to Pontal and probably spawned. The Pontal area at the Abaete?? River mouth was the most important spawning site we found. Prespawning fish moved back and forth between main-stem staging areas upstream of the Abaete?? River mouth and Pontal for short visits. These multiple visits were probably needed as ripe fish waited for spawning cues from a flooding Abaete?? River. Some fish homed to prespaw ning staging areas, spawning areas, and nonspawning areas. The migratory style of zulega was dualistic, with resident and migratory fish. Total linear home range was also dualistic, with small (<26-km) and large (53-127-km) ranges. The locations of spawning areas and home ranges suggest that the Pontal group (which includes Cilga fish) is one population that occupies about 110 km. The Pontal population overlaps a short distance with a population located downstream of Cilga. Movements of late-stage TM adults suggest that the TM group is a separate population, possibly with connections to populations upstream of TMD. ?? Copyright by the American Fisheries Society

Characterization of W-Ti-O thin films for application in photovoltaics

NASA Astrophysics Data System (ADS)

Christmas, Amanda P.

Photovoltaic (PV) devices consist of the conversion of light energy into electricity. Nearly all PV technologies employ transparent conducting oxides (TCO) as an integral part of the de-vice structure so that the light can reach the semiconductor. The predominant transparent conducting oxide (TCO) that is currently being used in industry is indium tin oxide (ITO). However, Indium (In) is high in cost and becoming scarce in the world. This work is focused towards Titanium doped Tungsten oxide (WO3) for TCO application. The ultimate goal is making novel, cheaper, and efficient TCOs based on W-Ti-O films. Titanium will enhance the conductivity of the film. In addition, Ti is more abundant than In thus leading to low-cost TCO. Ti-doped WO3 (W-Ti-O) films were grown by co-sputter deposition onto silicon, Si (100), and optical grade quartz wafers. Co-sputtering of Ti and W metal targets was per-formed in a wide growth temperature range (room temperature (RT)-500 °C). The Ti sputter-ing power varied from 50 watts-100 watts in order to gain an understanding of the Ti effect. The structure and optical properties were characterized by the X-ray diffraction (XRD), scan-ning electron microscopy (SEM) and the spectrophotometry measurements. The films are op-tically transparent and a correlation between the growth conditions and optical properties is derived. The XRD results show W-Ti-O films grown at RT are amorphous and the films crys-tallize at 200°C. A decrease in the peak intensity implies that the crystallinity decreases with an increase in titanium (Ti) along with a phase change at higher substrate growth tempera-tures. The optical results show the transparency of the films is well above 80%. The energy band gap decreases from 4.0 eV to 3.9 eV with an increase in substrate temperature and in-creases from 3.85 eV to 3.95 eV with an increase of Ti. These results meet the criteria of two essential TCO parameters.

Low-frequency variability of the Atlantic MOC in the eddying regime : the intrinsic component.

NASA Astrophysics Data System (ADS)

Gregorio, S.; Penduff, T.; Barnier, B.; Molines, J.-M.; Le Sommer, J.

2012-04-01

A 327-year 1/4° global ocean/sea-ice simulation has been produced by the DRAKKAR ocean modeling consortium. This simulation is forced by a repeated seasonal atmospheric forcing but nevertheless exhibits a substantial low-frequency variability (at interannual and longer timescales), which is therefore of intrinsic origin. This nonlinearly-generated intrinsic variability is almost absent from the coarse-resolution (2°) version of this simulation. Comparing the 1/4° simulation with its fully-forced counterpart, Penduff et al. (2011) have shown that the low-frequency variability of local sea-level is largely generated by the ocean itself in eddying areas, rather than directly forced by the atmosphere. Using the same simulations, the present study quantifies the imprint of the intrinsic low-frequency variability on the Meridional Overturning Circulation (MOC) at interannual-to-decadal timescales in the Atlantic. We first compare the intrinsic and atmospherically-forced interannual variances of the Atlantic MOC calculated in geopotential coordinates. This analysis reveals substantial sources of intrinsic MOC variability in the South Atlantic (driven by the Agulhas mesoscale activity according to Biastoch et al. (2008)), but also in the North Atlantic. We extend our investigation to the MOC calculated in isopycnal coordinates, and identify regions in the basin where the water mass transformation exhibits low-frequency intrinsic variability. In this eddy-permitting regime, intrinsic processes are shown to generate about half the total (geopotential and isopycnal) MOC interannual variance in certain key regions of the Atlantic. This intrinsic variability is absent from 2° simulations. Penduff, T., Juza, M., Barnier, B., Zika, J., Dewar, W.K., Treguier, A.-M., Molines, J.-M., Audiffren, N., 2011: Sea-level expression of intrinsic and forced ocean variabilities at interannual time scales. J. Climate, 24, 5652-5670. doi: 10.1175/JCLI-D-11-00077.1. Biastoch, A., Böning, C

Topographic correction realization based on the CBERS-02B image

NASA Astrophysics Data System (ADS)

Qin, Hui-ping; Yi, Wei-ning; Fang, Yong-hua

2011-08-01

The special topography of mountain terrain will induce the retrieval distortion in same species and surface spectral lines. In order to improve the research accuracy of topographic surface characteristic, many researchers have focused on topographic correction. Topographic correction methods can be statistical-empirical model or physical model, in which the methods based on the digital elevation model data are most popular. Restricted by spatial resolution, previous model mostly corrected topographic effect based on Landsat TM image, whose spatial resolution is 30 meter that can be easily achieved from internet or calculated from digital map. Some researchers have also done topographic correction based on high spatial resolution images, such as Quickbird and Ikonos, but there is little correlative research on the topographic correction of CBERS-02B image. In this study, liao-ning mountain terrain was taken as the objective. The digital elevation model data was interpolated to 2.36 meter by 15 meter original digital elevation model one meter by one meter. The C correction, SCS+C correction, Minnaert correction and Ekstrand-r were executed to correct the topographic effect. Then the corrected results were achieved and compared. The images corrected with C correction, SCS+C correction, Minnaert correction and Ekstrand-r were compared, and the scatter diagrams between image digital number and cosine of solar incidence angel with respect to surface normal were shown. The mean value, standard variance, slope of scatter diagram, and separation factor were statistically calculated. The analysed result shows that the shadow is weakened in corrected images than the original images, and the three-dimensional affect is removed. The absolute slope of fitting lines in scatter diagram is minished. Minnaert correction method has the most effective result. These demonstrate that the former correction methods can be successfully adapted to CBERS-02B images. The DEM data can be

Switching of the substrate specificity of protein tyrosine phosphatase N12 by cyclin-dependent kinase 2 phosphorylation orchestrating 2 oncogenic pathways.

PubMed

Li, Hui; Yang, Duxiao; Ning, Shanglei; Xu, Yinghui; Yang, Fan; Yin, Rusha; Feng, Taihu; Han, Shouqing; Guo, Lu; Zhang, Pengju; Qu, Wenjie; Guo, Renbo; Song, Chen; Xiao, Peng; Zhou, Chengjun; Xu, Zhigang; Sun, Jin-Peng; Yu, Xiao

2018-01-01

The protein tyrosine phosphatase nonreceptor type 12 (PTPN12) is a multifunctional protein and has elicited much research attention because its decreased protein level has been associated with poor prognosis of several types of cancers. Recently, we have solved the crystal structure of the phosphatase domain of PTPN12, which disclosed a specific PTPN12-insert-loop harboring a cyclin-dependent kinase 2 (CDK2) phosphorylation site. However, the functional significance of this phosphorylation is undefined. In the present study, we found that S19 site phosphorylation of PTPN12 by CDK2 discharged its antitumor activity by down-regulation of its inhibitory role in cell migration, but not affecting its other regulatory functions. Phosphorylation of PTPN12 at the S19 site changed its substrate interface, and by doing so, selectively decreased its activity toward the human epidermal growth factor receptor 2 (HER2)- pY 1196 site, but not other HER2 phosphorylation sites or other known PTPN12 substrates. A further in-depth mechanism study revealed that the phosphorylation of PTPN12 by CDK2 impaired recruitment of the serine/threonine-protein kinase 1 (PAK1) to HER2, resulted in the blockade of the HER2-pY 1196 -PAK1-T 423 signaling pathway, thus increased tumor cell motility. Taken together, our results identified a new phosphorylation-based substrate recognition mechanism of PTPN12 by CDK2, which orchestrated signaling crosstalk between the oncogenic CDK2 and HER2 pathways. The newly identified governing mechanism of the substrate selectivity of a particular phosphatase was previously unappreciated and exemplifies how a phospho-network is precisely controlled in different cellular contexts.-Li, H., Yang, D., Ning, S., Xu, Y., Yang, F., Yin, R., Feng, T., Han, S., Guo, L., Zhang, P., Qu, W., Guo, R., Song, C., Xiao, P., Zhou, C., Xu, Z., Sun, J.-P., Yu, X. Switching of the substrate specificity of protein tyrosine phosphatase N12 by cyclin-dependent kinase 2 phosphorylation

The Operational Role of the Belgian User Support and Operations Centre for the Atmosphere-Space Interactions Monitor (ASIM) on-board the International Space Station.

NASA Astrophysics Data System (ADS)

Muller, C.; Moreau, D., Sr.; Pandey, P. K.; Crosby, N. B.

2014-12-01

The Belgian User Support and Operations Centre (B.USOC) is an operational centre managing technological and scientific payloads on the International Space Station (ISS). B.USOC is the Facility Responsible Centre (FRC) for the European Space Agency's (ESA) Atmosphere-Space Interactions Monitor (ASIM) payload and also manages the Scientific Mission Centre of the Centre National d'Etudes Spatiales (CNES) PICARD satellite that monitors solar activity, among various other space missions. In this respect, B.USOC is ideally positioned to manage possible synergies between ASIM, the satellite TARANIS (Tool for the Analysis of RAdiation from lightNIng and Sprites), other space missions and ground-based networks. The ASIM mission (Neubert, 2009) consists of a package of two nadir instruments: one for the visible spectrum and another for X-ray and gamma-ray frequencies. In the normal operating mode "trigger mode" both instruments continuously measure, but, do not record data below certain thresholds. Another mode is a "timed mode", where, during a certain time the observations are recorded even in the absence of triggers. The "timed mode" demands a lot of flexibility from both scientific teams and B.USOC, as, ASIM's main targets of investigation (sprites and elves) are related to intense thunderstorms and thus, require reliable meteorological forecasts in the entire range of ISS latitudes. Moreover, ASIM is sensitive to a large number of phenomena of which most have a direct relationship with solar activity and therefore would probably need support from the ESA SSA (Space Situational Awareness) Space Weather Coordination Centre (SSCC) that shares the same campus with B.USOC. Local cooperation between the two centres, together with other space payloads such as TARANIS and ground-based networks will greatly optimize ASIM payload operations as well as scientific return. Neubert, T., and the ASIM Team, ASIM - an Instrument Suite for the International Space Station, Corte Workshop

MicroCameras and Photometers (MCP) on board the TARANIS satellite

NASA Astrophysics Data System (ADS)

Farges, T.; Hébert, P.; Le Mer-Dachard, F.; Ravel, K.; Gaillac, S.

2017-12-01

TARANIS (Tool for the Analysis of Radiations from lightNing and Sprites) is a CNES micro satellite. Its main objective is to study impulsive transfers of energy between the Earth atmosphere and the space environment. It will be sun-synchronous at an altitude of 700 km. It will be launched in 2019 for at least 2 years. Its payload is composed of several electromagnetic instruments in different wavelengths (from gamma-rays to radio waves including optical). TARANIS instruments are currently in calibration and qualification phase. The purpose is to present the MicroCameras and Photometers (MCP) design, to show its performances after its recent characterization and at last to discuss the scientific objectives and how we want to answer it with the MCP observations. The MicroCameras, developed by Sodern, are dedicated to the spatial description of TLEs and their parent lightning. They are able to differentiate sprite and lightning thanks to two narrow bands ([757-767 nm] and [772-782 nm]) that provide simultaneous pairs of images of an Event. Simulation results of the differentiation method will be shown. After calibration and tests, the MicroCameras are now delivered to the CNES for integration on the payload. The Photometers, developed by Bertin Technologies, will provide temporal measurements and spectral characteristics of TLEs and lightning. There are key instrument because of their capability to detect on-board TLEs and then switch all the instruments of the scientific payload in their high resolution acquisition mode. Photometers use four spectral bands in the [170-260 nm], [332-342 nm], [757-767 nm] and [600-900 nm] and have the same field of view as cameras. The on-board TLE detection algorithm remote-controlled parameters have been tuned before launch using the electronic board and simulated or real events waveforms. After calibration, the Photometers are now going through the environmental tests. They will be delivered to the CNES for integration on the

Foraminotomia cervical posterior en el tratamiento de conflictos foraminales

PubMed Central

Campero, Álvaro; Barrera, Ramiro; Ajler, Pablo

2012-01-01

Introducción: La foraminomotima cervical posterior es un procedimiento utilizado para la descompresion radicular por via posterior y constituye una alternativa a la via clásica anterior. En este trabajo evaluamos nuestra serie de pacientes tratados por esta via. Método: Desde enero de 2008 a diciembre de 2011, 17 pacientes (18 foraminotomías) fueron operados por presentar cervicobraquialgia a causa de un conflicto foraminal, realizando un foraminotomía cervical posterior. Los pacientes fueron evaluados en el postoperatorio inmediato, al mes y a los 3 meses de la cirugía. Los parámetros para valorar los resultados fueron la Escala Análoga del Dolor (VAS), la Neck Disability Index y los criterios de Odom. Resultados: El dolor radicular por conflicto foraminal secundario a hernia de disco cervical fue el síntoma y la patología predominante. El nivel más afectado fue C5-C6. La resolución completa del dolor radicular se observó en casi todos los pacientes. La VAS preoperatoria en promedio fue de 8.8 (mínimo 8 – máximo 10), con una franca mejoría en todos los casos (0.4 en el último control). La media en la Neck Disability Index al inicio fue de 35.3 (mínimo 32 – máximo 45), con una evolución favorable en la evaluación final (0.6). Los Criterios de Odom para la evaluación de pacientes operados de columna cervical fueron satisfactorios con un promedio de 1.17. Se observaron complicaciones en 4 pacientes (23%), todas tuvieron una evolución favorable. No hubo infecciones, discitis ni empeoramiento de los síntomas preexistentes en ningún paciente. Conclusión: La foraminotomía cervical posterior es un procedimiento efectivo para el tratamiento del dolor radicular en los conflictos foraminales PMID:23596556

Variables Measured during Cardiopulmonary Exercise Testing as Predictors of Mortality in Chronic Systolic Heart Failure

PubMed Central

Keteyian, Steven J.; Patel, Mahesh; Kraus, William E.; Brawner, Clinton A.; McConnell, Timothy R.; Piña, Ileana L.; Leifer, Eric S.; Fleg, Jerome L.; Blackburn, Gordon; Fonarow, Gregg C.; Chase, Paul J.; Piner, Lucy; Vest, Marianne; O’Connor, Christopher M.; Ehrman, Jonathan K.; Walsh, Mary N.; Ewald, Gregory; Bensimhon, Dan; Russell, Stuart D.

2015-01-01

BACKGROUND Data from a cardiopulmonary exercise (CPX) test are used to determine prognosis in patients with chronic heart failure (HF). However, few published studies have simultaneously compared the relative prognostic strength of multiple CPX variables. OBJECTIVES We sought to describe the strength of the association among variables measured during a CPX test and all-cause mortality in patients with HF with reduced ejection fraction (HFrEF), including the influence of sex and patient effort, as measured by respiratory exchange ratio (RER). METHODS Among patients (n = 2,100, 29% women) enrolled in the HF-ACTION (HF-A Controlled Trial Investigating Outcomes of exercise traiNing) trial, 10 CPX test variables measured at baseline (e.g., peak oxygen uptake [VO2], exercise duration, percent predicted peak VO2 [%ppVO2], ventilatory efficiency) were examined. RESULTS Over a median follow-up of 32 months, there were 357 deaths. All CPX variables, except RER, were related to all-cause mortality (all p < 0.0001). Both %ppVO2 and exercise duration were equally able to predict (Wald χ2: ~141) and discriminate (c-index: 0.69) mortality. Peak VO2 (mL·kg−1·min−1) was the strongest predictor of mortality among men (Wald χ2: 129) and exercise duration among women (Wald χ2: 41). Multivariable analyses showed that %ppVO2, exercise duration, and peak VO2 (mL·kg−1·min−1) were similarly able to predict and discriminate mortality. In men, a 10% 1-year mortality rate corresponded to a peak VO2 of 10.9 mL·kg−1·min−1 versus 5.3 mlkg−1/min−1 in women. CONCLUSIONS Peak VO2, exercise duration, and % ppVO2 carried the strongest ability to predict and discriminate the likelihood of death in patients with HFrEF. The prognosis associated with a given peak V2 differed by sex. PMID:26892413

TRAF6 and the Three C-Terminal Lysine Sites on IRF7 Are Required for Its Ubiquitination-Mediated Activation by the Tumor Necrosis Factor Receptor Family Member Latent Membrane Protein 1▿

PubMed Central

Ning, Shunbin; Campos, Alex D.; Darnay, Bryant G.; Bentz, Gretchen L.; Pagano, Joseph S.

2008-01-01

We have recently shown that interferon regulatory factor 7 (IRF7) is activated by Epstein-Barr virus latent membrane protein 1 (LMP1), a member of the tumor necrosis factor receptor (TNFR) superfamily, through receptor-interacting protein-dependent K63-linked ubiquitination (L. E. Huye, S. Ning, M. Kelliher, and J. S. Pagano, Mol. Cell. Biol. 27:2910-2918, 2007). In this study, with the use of small interfering RNA and TNFR-associated factor 6 (TRAF6) knockout cells, we first show that TRAF6 and its E3 ligase activity are required for LMP1-stimulated IRF7 ubiquitination. In Raji cells which are latently infected and express high levels of LMP1 and IRF7 endogenously, expression of a TRAF6 small hairpin RNA construct reduces endogenous ubiquitination and endogenous activity of IRF7. In TRAF6−/− mouse embryonic fibroblasts, reconstitution with TRAF6 expression, but not with TRAF6(C70A), which lacks the E3 ligase activity, recovers LMP1's ability to stimulate K63-linked ubiquitination of IRF7. Further, we identify IRF7 as a substrate for TRAF6 E3 ligase and show that IRF7 is ubiquitinated by TRAF6 at multiple sites both in vitro and in vivo. Most important, we determine that the last three C-terminal lysine sites (positions 444, 446, and 452) of human IRF7 variant A are essential for activation of IRF7; these are the first such sites identified. A ubiquitination-deficient mutant of IRF7 with these sites mutated to arginines completely loses transactivational ability in response not only to LMP1 but also to the IRF7 kinase IκB kinase ɛ. In addition, we find that K63-linked ubiquitination of IRF7 occurs independently of its C-terminal functional phosphorylation sites. These data support our hypothesis that regulatory ubiquitination of IRF7 is a prerequisite for its phosphorylation. This is the first evidence to imply that ubiquitination is required for phosphorylation and activation of a transcription factor. PMID:18710948

Magnetotelluric investigation of the geothermal anomaly in Hailin, Mudanjiang, northeastern China

NASA Astrophysics Data System (ADS)

Zhang, Lili; Hao, Tianyao; Xiao, Qibin; Wang, Jie; Zhou, Liang; Qi, Min; Cui, Xiangpan; Cai, Ningxiao

2015-07-01

To study the occurrence conditions and locations of geothermal bodies in Hailin, Mudanjiang, northeastern China, we conducted a magnetotelluric investigation to delineate the electrical conductivity structure of the area on three parallel profiles. The area to the west of the Mudanjiang Fault lies in the Hailang sag of the Ning'an Basin. The data were processed using the mutual reference technique, static shift correction, and structural strike and dimensionality analysis based on tensor decomposition. Moreover, a modified anisotropic-diffusion-based method was used to suppress noise for the magnetotelluric time series data. This method retains the advantages of conventional anisotropic diffusion and is superior in its discrimination ability. The method is characteristic not only of the inherited features such as intra-region smoothing and edge preservation, but also of the adaptive selection of the diffusion coefficient. Data analysis revealed that the electrical resistivity structure can be approximated by a two-dimensional characterization. Two-dimensional inversion and rendering visualization show that a highly resistive granite basement is covered with conductive sedimentary layers and that a relatively low-resistivity anomalous structure with a resistivity of approximately 100-600 Ω·m is imbedded in the high-resistivity background. The anomalous structure has a narrow top and a wide bottom (the bottom depth is at least 3500 m). The shape and electrical features of the structure indicate favorable storage space for hot subsurface water. Fault activities and magma intrusion may result in the fractures of the basement, which are filled with hot water and thus produce the relatively low resistivity. Based on a comprehensive analysis, we infer that the structure is indicative of a geothermal reservoir. An exploratory well drilled near the structure confirms the occurrence of high temperatures. Several geological factors (cap rock, basement, and major faults

Dietary genistein supplementation in laying broiler breeder hens alters the development and metabolism of offspring embryos as revealed by hepatic transcriptome analysis.

PubMed

Lv, Zengpeng; Fan, Hao; Zhang, Beibei; Ning, Chao; Xing, Kun; Guo, Yuming

2018-03-08

capacity, as a result of maternal GEN effects, was conducive to embryonic development. In conclusion, the addition of GEN to the diet of laying broiler breeder hens significantly promoted the development and metabolism of chick embryos.-Lv, Z., Fan, H., Zhang, B., Ning, C., Xing, K., Guo, Y. Dietary genistein supplementation in laying broiler breeder hens alters the development and metabolism of offspring embryos as revealed by hepatic transcriptome analysis.

[Not Available].

PubMed

Corella Aznar, Elena Guadalupe; Ayerza Casas, Ariadna; Samper Villagrasa, Pilar; Rodríguez Vigil, Carmen; Jiménez Montañés, Lorenzo; Calvo Escribano, Carlota; Labarta Aizpun, José Ignacio

2016-06-30

Introducción: los supervivientes de leucemia aguda (LA) infantil presentan un riesgo incrementado de alteraciones metabólicas y cardiovasculares que aumentan su morbimortalidad a largo plazo.Objetivo: estimar la prevalencia de obesidad, resistencia a la insulina, dislipemia e hipertensión arterial como factores de riesgo cardiometabólico (FRCM) en un grupo de supervivientes de LA infantil, y analizar las posibles causas asociadas a su desarrollo.Material y métodos: estudio observacional retrospectivo en 47 supervivientes de LA tratados en un periodo de 4 años, que recibieron seguimiento durante 10 años.Resultados: el 40% de los participantes presentaron al menos un FRCM durante el seguimiento, siendo la dislipemia (aumento LDL) el más frecuente (38,3%), seguido de obesidad/sobrepeso (31,9%) y HTA sistólica (23,4%). El sexo femenino se estableció como factor de riesgo parael desarrollo de todos ellos (RR 1,6; RR 3,16; RR 1,69; p < 0,05). Ningún superviviente desarrolló diabetes mellitus, pero sí resistencia a la insulina el 19,4%. Los pacientes con leucemias de peor pronóstico presentaron mayor riesgo de desarrollar obesidad, resistencia a la insulina y aumento de LDL (RR 3,56; RR 4,08; RR 2,53; p < 0,05). Los pacientes tratados con trasplante de progenitores hematopoyéticos presentaron mayor riesgo de obesidad, aumento de LDL e HTA sistólica (RR 2,86; RR 2,39; RR 3,12; p<0,05). La radioterapia se asoció de igual modo con un incremento de resistencia a la insulina e hipertensión arterial sistólica (RR 2,47; RR 2,53; p < 0,05).Conclusiones: existe un aumento en la prevalencia de obesidad/sobrepeso, dislipemia, resistencia a la insulina y alteración de la tensión arterial sistólica en supervivientes de leucemia aguda infantil a lo largo del tiempo, especialmente en aquellos con enfermedades y tratamientos más agresivos.

cAMP and in vivo hypoxia induce tob, ifr1, and fos expression in erythroid cells of the chick embryo.

PubMed

Dragon, Stefanie; Offenhäuser, Nina; Baumann, Rosemarie

2002-04-01

During avian embryonic development, terminal erythroid differentiation occurs in the circulation. Some of the key events, such as the induction of erythroid 2,3-bisphosphoglycerate (2,3-BPG), carbonic anhydrase (CAII), and pyrimidine 5'-nucleotidase (P5N) synthesis are oxygen dependent (Baumann R, Haller EA, Schöning U, and Weber M, Dev Biol 116: 548-551, 1986; Dragon S and Baumann R, Am J Physiol Regulatory Integrative Comp Physiol 280: R870-R878, 2001; Dragon S, Carey C, Martin K, and Baumann R, J Exp Biol 202: 2787-2795, 1999; Dragon S, Glombitza S, Götz R, and Baumann R, Am J Physiol Regulatory Integrative Comp Physiol 271: R982-R989, 1996; Dragon S, Hille R, Götz R, and Baumann R, Blood 91: 3052-3058, 1998; Million D, Zillner P, and Baumann R, Am J Physiol Regulatory Integrative Comp Physiol 261: R1188-R1196, 1991) in an indirect way: hypoxia stimulates the release of norepinephrine (NE)/adenosine into the circulation (Dragon et al., J Exp Biol 202: 2787-2795, 1999; Dragon et al., Am J Physiol Regulatory Integrative Comp Physiol 271: R982-R989, 1996). This leads via erythroid beta-adrenergic/adenosine A(2) receptor activation to a cAMP signal inducing several proteins in a transcription-dependent manner (Dragon et al., Am J Physiol Regulatory Integrative Comp Physiol 271: R982-R989, 1996; Dragon et al., Blood 91: 3052-3058, 1998; Glombitza S, Dragon S, Berghammer M, Pannermayr M, and Baumann R, Am J Physiol Regulatory Integrative Comp Physiol 271: R973-R981, 1996). To understand how the cAMP-dependent processes are initiated, we screened an erythroid cDNA library for cAMP-regulated genes. We detected three genes that were strongly upregulated (>5-fold) by cAMP in definitive and primitive red blood cells. They are homologous to the mammalian Tob, Ifr1, and Fos proteins. In addition, the genes are induced in the intact embryo during short-term hypoxia. Because the genes are regulators of proliferation and differentiation in other cell types, we suggest that c

Sun-Earth Day: Reaching the Education Audience by Informal Means

NASA Technical Reports Server (NTRS)

Thieman, J.; Lewis, E.; Cline, T.

2010-01-01

For ten years the Sun-Earth Day program has promoted Heliophysics education to ever larger audiences through events centered on attractive annual themes. What originally started out as a one day event quickly evolved into a series of programs and events that occur throughout the year culminating with a celebration on or near the Spring Equinox. The events are often formal broadcasts or webcasts seeking to convey the science behind the latest solar-terrestrial mission discoveries. This has been quite successful, but it is clear that the younger generation increasingly depends on social networking approaches and informal news transmission for learning what is happening in the world around them. For 2010, the Sun-Earth Day team put emphasis on using informal approaches to bring the theme to the audience. The main event, a webcast from the NASA booth at the National Science Teachers Association (NSTA) annual meeting by the NASA EDGE group, took a lighthearted and offbeat approach to interviewing scientists and educators about Heliophysics news. NASA EDGE programs are unscripted and unpredictable, and that represents a different approach to getting the message across. The webcast was supplemented by a number of social networking avenues. The Sun-Earth Day program explored a wide range of social media applications including Facebook, Twitter, NING, podcasting, iPhone apps, etc. Each of these offers unique and effective methods to promote Heliophysics content and mission related highlights. The facebook site was quite popular and message posting there told the Sun-Earth Day story piece by piece. The same could be said of twittering and the tweetup held at the NSTA site. Has all of this been effective? Results are still being gathered, but anecdotal responses from the world seem very positive. What other methods might be used in the future to bring the science to a personal hands-on, interactive experience? Outcomes: Participants will: (1) Be introduced to the Sun

A Study of Energy Management Systems and its Failure Modes in Smart Grid Power Distribution

NASA Astrophysics Data System (ADS)

Musani, Aatif

The subject of this thesis is distribution level load management using a pricing signal in a smart grid infrastructure. The project relates to energy management in a spe-cialized distribution system known as the Future Renewable Electric Energy Delivery and Management (FREEDM) system. Energy management through demand response is one of the key applications of smart grid. Demand response today is envisioned as a method in which the price could be communicated to the consumers and they may shift their loads from high price periods to the low price periods. The development and deployment of the FREEDM system necessitates controls of energy and power at the point of end use. In this thesis, the main objective is to develop the control model of the Energy Management System (EMS). The energy and power management in the FREEDM system is digitally controlled therefore all signals containing system states are discrete. The EMS is modeled as a discrete closed loop transfer function in the z-domain. A breakdown of power and energy control devices such as EMS components may result in energy con-sumption error. This leads to one of the main focuses of the thesis which is to identify and study component failures of the designed control system. Moreover, H-infinity ro-bust control method is applied to ensure effectiveness of the control architecture. A focus of the study is cyber security attack, specifically bad data detection in price. Test cases are used to illustrate the performance of the EMS control design, the effect of failure modes and the application of robust control technique. The EMS was represented by a linear z-domain model. The transfer function be-tween the pricing signal and the demand response was designed and used as a test bed. EMS potential failure modes were identified and studied. Three bad data detection meth-odologies were implemented and a voting policy was used to declare bad data. The run-ning mean and standard deviation analysis method proves to be

A vision for, and progress towards EarthCube

NASA Astrophysics Data System (ADS)

Jacobs, C.

2012-04-01

range of geosciences data collections and collectors, establish sustainable partnerships with other entities that collect data (e.g. other Federal and international agencies), the integrate simulations and observations, and foster symbiotic relationships with industry. Two realize this vision, NSF posted open letters to the community, had several WebEx session, established a social network website to stimulate community dialog (EarthCube.ning.com), held a Charrette with broad community participation, and is accepting expression of interests from the community for the early development efforts of all or part the EarthCube framework.

Facteurs associés à la tuberculose chez l'enfant au Centre Hospitalier Universitaire Mère-Enfant de Tsaralalàna, Antananarivo: une étude cas-témoins

PubMed Central

Randriatsarafara, Fidiniaina Mamy; Vololonarivelo, Barbara Elyan Edwige; Rabemananjara, Nambinina Nirina Gaby; Randrianasolo, Jean Baptiste Olivier; Rakotomanga, Jean de Dieu Marie; Randrianarimanana, Vahiniarison Dieudonné

2014-01-01

Introduction A Madagascar, la tuberculose reste un problème de santé publique majeur, l'incidence s’élevant à 16% depuis 2009. Le présent travail a pour objet d'identifier les facteurs de risque de tuberculose chez l'enfant. Méthodes Nous avons mené une étude rétrospective de type cas-témoins sur les facteurs de risque de la tuberculose chez les enfants de 0 à 15 ans au Centre Hospitalier Universitaire Mère-Enfant de Tsaralalàna, de Janvier 2009 à Décembre 2011. Les enfants diagnostiqués de tuberculose dont le diagnostic a été retenu par des éléments de certitude ou par le score pédiatrique de la tuberculose représentent les cas. Les enfants hospitalisés durant la même période, non tuberculeux et de même âge, sont classés témoins. L'Odds Ratio quantifie les associations. Résultats Au total, 91 cas et 173 témoins ont été inclus. Parmi les cas, 73,62% présentent une malnutrition. De fortes associations sont démontrées avec: la malnutrition sévère (OR=6 (IC95% 2,43-15,61 (p<10-5))); le contage tuberculeux (OR=4,71 (IC95% 1,76-12,7 (p=0,003))); la non vaccination par le BCG (OR=4,21 (IC95% 1,99-8,99 (p < 2.10-5))); le niveau intellectuel maternel bas (OR=4,17 (IC95% 0,67-28,14 (p=0,06))); la taille de la fratrie à partir de 5 (OR=4,5). Des associations faibles sont retrouvées pour les autres facteurs étudiés. Les cas présentent une létalité de 18,7% contre 6,3% chez les témoins (p<10-5); 64,7 % des décès sont dus aux formes méningées. Conclusion La tuberculose reste un fléau chez les enfants, avec une lourde responsabilité de la pauvreté rassemblant presque tous les facteurs sus-cités. PMID:25838852

On-road emission factors of PM pollutants for light-duty vehicles (LDVs) based on urban street driving conditions

NASA Astrophysics Data System (ADS)

Kam, Winnie; Liacos, James W.; Schauer, James J.; Delfino, Ralph J.; Sioutas, Constantinos

2012-12-01

An on-road sampling campaign was conducted on two major surface streets (Wilshire and Sunset Boulevards) in Los Angeles, CA, to characterize PM components including metals, trace elements, and organic species for three PM size fractions (PM10-2.5, PM2.5-0.25, and PM0.25). Fuel-based emission factors (mass of pollutant per kg of fuel) were calculated to assess the emissions profile of a light-duty vehicle (LDV) traffic fleet characterized by stop-and-go driving conditions that are reflective of urban street driving. Emission factors for metals and trace elements were highest in PM10-2.5 while emission factors for PAHs and hopanes and steranes were highest in PM0.25. PM2.5 emission factors were also compared to previous freeway, roadway tunnel, and dynamometer studies based on an LDV fleet to determine how various environments and driving conditions may influence concentrations of PM components. The on-road sampling methodology deployed in the current study captured substantially higher levels of metals and trace elements associated with vehicular abrasion (Fe, Ca, Cu, and Ba) and crustal origins (Mg and Al) than previous LDV studies. The semi-volatile nature of PAHs resulted in higher levels of PAHs in the particulate phase for LDV tunnel studies (Phuleria et al., 2006) and lower levels of PAHs in the particulate phase for freeway studies (Ning et al., 2008). With the exception of a few high molecular weight PAHs, the current study's emission factors were in between the LDV tunnel and LDV freeway studies. In contrast, hopane and sterane emission factors were generally comparable between the current study, the LDV tunnel, and LDV freeway, as expected given the greater atmospheric stability of these organic compounds. Overall, the emission factors from the dynamometer studies for metals, trace elements, and organic species are lower than the current study. Lastly, n-alkanes (C19-C40) were quantified and alkane carbon preference indices (CPIs) were determined to be in

Where should the upper boundary of the earth's critical zone be?

NASA Astrophysics Data System (ADS)

Liu, W.; Zhang, X. J.

2017-12-01

Recently increasing attention has been paid to the study of the critical zone (CZ) of the earth. The upper boundary of the CZ is generally defined as the top of plant canopy, and the lower boundary at the bottom of deep groundwater. The question is whether the ecological, biogeochemical and hydrological processes that are the focuses of CZ research occur within the scope of such boundaries. The role of water is central in these processes as is shown by the current studies as follows. First, there exist water vapor transport strips or pathways with higher flux strength than the surrounding areas in the troposphere, known as "tropospheric rivers" or "atmospheric rivers" (Newell, et al, 1992; Zhu, et al, 1998), specially dubbed as "sky rivers" (Wang, et al, 2016). The sky rivers are connected with the surface and underground rivers by precipitation and evapotranspiration processes, forming a complete water cycle system of the earth. Second, changes in atmospheric composition, such as aerosol increases, the formation of smog, CO2 concentration rising, directly or indirectly affected solar radiation and plant growth, which to a large extent determine potential evapotranspiration and vegetation cover change. Based on the Budyko model, annual water balance at a catchment is closely related to these changes (Zhang, et al., 2001; Ning, et al., 2017). Third, the theory of evaporation complementarity holds that surface evapotranspiration can be completely determined and calculated by meteorological data. Based on the eddy covariance observation for water and heat flux in the Loess Plateau (Brutsaert, et al., 2017), the relationship between calculated and observed ET values becomes stronger from 2m to 32m, which may be related to the existence of a blending height at higher elevations above the ground. Therefore, we deem that the CZ upper boundary should be selected at the tropopause of the atmosphere. The troposphere, directly affected by the earth surface, contains 3/4 of

Learning from concurrent Lightning Imaging Sensor and Lightning Mapping Array observations in preparation for the MTG-LI mission

NASA Astrophysics Data System (ADS)

Defer, Eric; Bovalo, Christophe; Coquillat, Sylvain; Pinty, Jean-Pierre; Farges, Thomas; Krehbiel, Paul; Rison, William

2016-04-01

The upcoming decade will see the deployment and the operation of French, European and American space-based missions dedicated to the detection and the characterization of the lightning activity on Earth. For instance the Tool for the Analysis of Radiation from lightNIng and Sprites (TARANIS) mission, with an expected launch in 2018, is a CNES mission dedicated to the study of impulsive energy transfers between the atmosphere of the Earth and the space environment. It will carry a package of Micro Cameras and Photometers (MCP) to detect and locate lightning flashes and triggered Transient Luminous Events (TLEs). At the European level, the Meteosat Third Generation Imager (MTG-I) satellites will carry in 2019 the Lightning Imager (LI) aimed at detecting and locating the lightning activity over almost the full disk of Earth as usually observed with Meteosat geostationary infrared/visible imagers. The American community plans to operate a similar instrument on the GOES-R mission for an effective operation in early 2016. In addition NASA will install in 2016 on the International Space Station the spare version of the Lightning Imaging Sensor (LIS) that has proved its capability to optically detect the tropical lightning activity from the Tropical Rainfall Measuring Mission (TRMM) spacecraft. We will present concurrent observations recorded by the optical space-borne Lightning Imaging Sensor (LIS) and the ground-based Very High Frequency (VHF) Lightning Mapping Array (LMA) for different types of lightning flashes. The properties of the cloud environment will also be considered in the analysis thanks to coincident observations of the different TRMM cloud sensors. The characteristics of the optical signal will be discussed according to the nature of the parent flash components and the cloud properties. This study should provide some insights not only on the expected optical signal that will be recorded by LI, but also on the definition of the validation strategy of LI, and

A Thermal Evolution Model of the Earth Including the Biosphere, Continental Growth and Mantle Hydration

NASA Astrophysics Data System (ADS)

Höning, D.; Spohn, T.

2014-12-01

By harvesting solar energy and converting it to chemical energy, photosynthetic life plays an important role in the energy budget of Earth [2]. This leads to alterations of chemical reservoirs eventually affecting the Earth's interior [4]. It further has been speculated [3] that the formation of continents may be a consequence of the evolution life. A steady state model [1] suggests that the Earth without its biosphere would evolve to a steady state with a smaller continent coverage and a dryer mantle than is observed today. We present a model including (i) parameterized thermal evolution, (ii) continental growth and destruction, and (iii) mantle water regassing and outgassing. The biosphere enhances the production rate of sediments which eventually are subducted. These sediments are assumed to (i) carry water to depth bound in stable mineral phases and (ii) have the potential to suppress shallow dewatering of the underlying sediments and crust due to their low permeability. We run a Monte Carlo simulation for various initial conditions and treat all those parameter combinations as success which result in the fraction of continental crust coverage observed for present day Earth. Finally, we simulate the evolution of an abiotic Earth using the same set of parameters but a reduced rate of continental weathering and erosion. Our results suggest that the origin and evolution of life could have stabilized the large continental surface area of the Earth and its wet mantle, leading to the relatively low mantle viscosity we observe at present. Without photosynthetic life on our planet, the Earth would be geodynamical less active due to a dryer mantle, and would have a smaller fraction of continental coverage than observed today. References[1] Höning, D., Hansen-Goos, H., Airo, A., Spohn, T., 2014. Biotic vs. abiotic Earth: A model for mantle hydration and continental coverage. Planetary and Space Science 98, 5-13. [2] Kleidon, A., 2010. Life, hierarchy, and the

Nontargeted diagnostic ion network analysis (NINA): A software to streamline the analytical workflow for untargeted characterization of natural medicines.

PubMed

Ye, Hui; Zhu, Lin; Sun, Di; Luo, Xiaozhuo; Lu, Gaoyuan; Wang, Hong; Wang, Jing; Cao, Guoxiu; Xiao, Wei; Wang, Zhenzhong; Wang, Guangji; Hao, Haiping

2016-11-30

The characterization of herbal prescriptions serves as a foundation for quality control and regulation of herbal medicines. Previously, the characterization of herbal chemicals from natural medicines often relied on the analysis of signature fragment ions from the acquired tandem mass spectrometry (MS/MS) spectra with prior knowledge of the herbal species present in the herbal prescriptions of interest. Nevertheless, such an approach is often limited to target components, and it risks missing the critical components that we have no prior knowledge of. We previously reported a "diagnostic ion-guided network bridging" strategy. It is a generally applicable and robust approach to analyze unknown substances from complex mixtures in an untargeted manner. In this study, we have developed a standalone software named "Nontargeted Diagnostic Ion Network Analysis (NINA)" with a graphical user interface based on a strategy for post-acquisition data analysis. NINA allows one to rapidly determine the nontargeted diagnostic ions (NIs) by summarizing all of the fragment ions shared by the precursors from the acquired MS/MS spectra. A NI-guided network using bridging components that possess two or more NIs can then be established via NINA. With such a network, we could sequentially identify the structures of all the NIs once a single compound has been identified de novo. The structures of NIs can then be used as "priori" knowledge to narrow the candidates containing the sub-structure of the corresponding NI from the database hits. Subsequently, we applied the NINA software to the characterization of a model herbal prescription, Re-Du-Ning injection, and rapidly identified 56 herbal chemicals from the prescription using an ultra-performance liquid chromatography quadrupole time-of-flight system in the negative mode with no knowledge of the herbal species or herbal chemicals in the mixture. Therefore, we believe the applications of NINA will greatly facilitate the characterization

Quantifying The Effects of Initial Soil Moisture On Seasonal Streamflow Forecasts In The Columbia River Basin

NASA Astrophysics Data System (ADS)

Hamlet, A. F.; Wood, A.; Lettenmaier, D. P.

The role of soil moisture storage in the hydrologic cycle is well understood at a funda- mental level. Antecedent conditions are known to have potentially significant effects on streamflow forecasts, especially for short (e.g., flood) lead times. For this reason, the U.S. Geological Survey defines its "water year" as extending from October through September, a time period selected because over most of the U.S., soil moisture is at a seasonal low at summer's end. The effects of carryover soil moisture storage in the Columbia River basin have usually been considered to be minimal when forecasts are made on a water year or seasonal basis. Our study demonstrates that the role of carry- over soil moisture storage can be important. Absent direct observations of ET and soil moisture that would permit a closing of the water balance from observations, we use a physically based hydrologic model to estimate the soil moisture state at the begin- ning of the forecast period (Oct 1). We then evaluate, in a self-consistent manner, the subsequent effects of interannual variations in fall soil moisture on streamflow during the subsequent spring and summer snowmelt season (April-September). We analyze the period from 1950-1999, and the subsequent effects to the seasonal water balance at The Dalles, OR for representative high, medium, and low water years. The effects of initial soil state in fall are remarkably persistent, with significant effects occurring in the summer of the following water year. For a representative low flow year (1992), the simulated variability of the soil moisture state in September produces a range of summer streamflows (April-September mean) equivalent to about 16 percent of the mean summer flows for all initial soil conditions, with analogous, but smaller, relative changes for medium and high flow years. Winter flows are also affected, and the rel- ative intensity of effects in winter and summer is variable, an effect that is probably attributable to the

Providing the Persistent Data Storage in a Software Engineering Environment Using Java/COBRA and a DBMS

NASA Technical Reports Server (NTRS)

Dhaliwal, Swarn S.

1997-01-01

object providing the persistent data server is implemented using the Java progranu-ning language. It uses the JRB to store/retrieve data in/from a relational database server. The persistent data management system provides transaction and user management facilities which allow multi-user, distributed access to the stored data in a secure manner.

A Governance Roadmap and Framework for EarthCube

NASA Astrophysics Data System (ADS)

Governance Steering Committee, EarthCube

2013-04-01

more effectively, by providing a community endorsed Governance Framework, released in September of 2012. The Framework, and corresponding community outreach, maximizes engagement of the broader EarthCube community, which in turn minimizes the risks that the community will not adopt EarthCube in its development and final states. The target stakeholder community includes academia, government, and the private-sector, both nationally and internationally. http://earthcube.ning.com/group/governance

Planning for the Future of Geo-Cybereducation: Outcomes of the Workshop, Challenges, and Future Directions

NASA Astrophysics Data System (ADS)

Ryan, J. G.; Eriksson, S. C.

2010-12-01

Inspired by the recommendations of the NSF report “Fostering Learning in the Networked World: The Cyberlearning Opportunity and Challenge” (NSF08204), the NSF National STEM Digital Learning program funded “Planning for the Future of Geocybereducation” Workshop sought to bring together leaders from the geoscience education community, from major geoscience research initiatives, and from the growing public- and private-sector geoscience information community. The objectives of the workshop were to begin conversations aimed at identifying best practices and tools for geoscience cyber-education, in the context of both the changing nature of learners and of rapidly evolving geo-information platforms, and to provide guidance to the NSF as to necessary future directions and needs for funding. 65 participants met and interacted live for the two-day workshop, with ongoing post-meeting virtual interactions via a collaborative workspace (www.geocybered.ning.com). Topics addressed included the rapidly changing character of learners, the growing capabilities of geoscience information systems and their affiliated tools, and effective models for collaboration among educators, researchers and geoinformation specialists. Discussions at the meeting focused on the implications of changing learners on the educational process, the challenges for teachers and administrators in keeping pace, and on the challenges of communication among these divergent professional communities. Ongoing virtual discussions and collaborations have produced a draft workshop document, and the workshop conveners are maintaining the workshop site as a venue for ongoing discussion and interaction. Several key challenges were evident from the workshop discussions and subsequent interactions: a) the development of most of the large geoinformatics and geoscience research efforts were not pursued with education as a significant objective, resulting in limited financial support for such activities after the

Severe Acute Respiratory Syndrome (SARS) Coronavirus ORF8 Protein Is Acquired from SARS-Related Coronavirus from Greater Horseshoe Bats through Recombination

PubMed Central

Lau, Susanna K. P.; Feng, Yun; Chen, Honglin; Luk, Hayes K. H.; Yang, Wei-Hong; Li, Kenneth S. M.; Zhang, Yu-Zhen; Huang, Yi; Song, Zhi-Zhong; Chow, Wang-Ngai; Fan, Rachel Y. Y.; Ahmed, Syed Shakeel; Yeung, Hazel C.; Lam, Carol S. F.; Cai, Jian-Piao; Wong, Samson S. Y.; Chan, Jasper F. W.; Yuen, Kwok-Yung

2015-01-01

ABSTRACT Despite the identification of horseshoe bats as the reservoir of severe acute respiratory syndrome (SARS)-related coronaviruses (SARSr-CoVs), the origin of SARS-CoV ORF8, which contains the 29-nucleotide signature deletion among human strains, remains obscure. Although two SARS-related Rhinolophus sinicus bat CoVs (SARSr-Rs-BatCoVs) previously detected in Chinese horseshoe bats (Rhinolophus sinicus) in Yunnan, RsSHC014 and Rs3367, possessed 95% genome identities to human and civet SARSr-CoVs, their ORF8 protein exhibited only 32.2 to 33% amino acid identities to that of human/civet SARSr-CoVs. To elucidate the origin of SARS-CoV ORF8, we sampled 348 bats of various species in Yunnan, among which diverse alphacoronaviruses and betacoronaviruses, including potentially novel CoVs, were identified, with some showing potential interspecies transmission. The genomes of two betacoronaviruses, SARSr-Rf-BatCoV YNLF_31C and YNLF_34C, from greater horseshoe bats (Rhinolophus ferrumequinum), possessed 93% nucleotide identities to human/civet SARSr-CoV genomes. Although these two betacoronaviruses displayed lower similarities than SARSr-Rs-BatCoV RsSHC014 and Rs3367 in S protein to civet SARSr-CoVs, their ORF8 proteins demonstrated exceptionally high (80.4 to 81.3%) amino acid identities to that of human/civet SARSr-CoVs, compared to SARSr-BatCoVs from other horseshoe bats (23.2 to 37.3%). Potential recombination events were identified around ORF8 between SARSr-Rf-BatCoVs and SARSr-Rs-BatCoVs, leading to the generation of civet SARSr-CoVs. The expression of ORF8 subgenomic mRNA suggested that the ORF8 protein may be functional in SARSr-Rf-BatCoVs. The high Ka/Ks ratio among human SARS-CoVs compared to that among SARSr-BatCoVs supported that ORF8 is under strong positive selection during animal-to-human transmission. Molecular clock analysis using ORF1ab showed that SARSr-Rf-BatCoV YNLF_31C and YNLF_34C diverged from civet/human SARSr-CoVs in approximately 1990. SARS

Severe Acute Respiratory Syndrome (SARS) Coronavirus ORF8 Protein Is Acquired from SARS-Related Coronavirus from Greater Horseshoe Bats through Recombination.

PubMed

Lau, Susanna K P; Feng, Yun; Chen, Honglin; Luk, Hayes K H; Yang, Wei-Hong; Li, Kenneth S M; Zhang, Yu-Zhen; Huang, Yi; Song, Zhi-Zhong; Chow, Wang-Ngai; Fan, Rachel Y Y; Ahmed, Syed Shakeel; Yeung, Hazel C; Lam, Carol S F; Cai, Jian-Piao; Wong, Samson S Y; Chan, Jasper F W; Yuen, Kwok-Yung; Zhang, Hai-Lin; Woo, Patrick C Y

2015-10-01

Despite the identification of horseshoe bats as the reservoir of severe acute respiratory syndrome (SARS)-related coronaviruses (SARSr-CoVs), the origin of SARS-CoV ORF8, which contains the 29-nucleotide signature deletion among human strains, remains obscure. Although two SARS-related Rhinolophus sinicus bat CoVs (SARSr-Rs-BatCoVs) previously detected in Chinese horseshoe bats (Rhinolophus sinicus) in Yunnan, RsSHC014 and Rs3367, possessed 95% genome identities to human and civet SARSr-CoVs, their ORF8 protein exhibited only 32.2 to 33% amino acid identities to that of human/civet SARSr-CoVs. To elucidate the origin of SARS-CoV ORF8, we sampled 348 bats of various species in Yunnan, among which diverse alphacoronaviruses and betacoronaviruses, including potentially novel CoVs, were identified, with some showing potential interspecies transmission. The genomes of two betacoronaviruses, SARSr-Rf-BatCoV YNLF_31C and YNLF_34C, from greater horseshoe bats (Rhinolophus ferrumequinum), possessed 93% nucleotide identities to human/civet SARSr-CoV genomes. Although these two betacoronaviruses displayed lower similarities than SARSr-Rs-BatCoV RsSHC014 and Rs3367 in S protein to civet SARSr-CoVs, their ORF8 proteins demonstrated exceptionally high (80.4 to 81.3%) amino acid identities to that of human/civet SARSr-CoVs, compared to SARSr-BatCoVs from other horseshoe bats (23.2 to 37.3%). Potential recombination events were identified around ORF8 between SARSr-Rf-BatCoVs and SARSr-Rs-BatCoVs, leading to the generation of civet SARSr-CoVs. The expression of ORF8 subgenomic mRNA suggested that the ORF8 protein may be functional in SARSr-Rf-BatCoVs. The high Ka/Ks ratio among human SARS-CoVs compared to that among SARSr-BatCoVs supported that ORF8 is under strong positive selection during animal-to-human transmission. Molecular clock analysis using ORF1ab showed that SARSr-Rf-BatCoV YNLF_31C and YNLF_34C diverged from civet/human SARSr-CoVs in approximately 1990. SARS-CoV ORF8

Development Status of Optical and Electromagnetic Instruments onboard JEM-GLIMS

NASA Astrophysics Data System (ADS)

Sato, Mitsuteru; Ushio, Tomoo; Morimoto, Takeshi; Suzuki, Makoto; Yamazaki, Atsushi; Ishida, Ryohei; Takahashi, Yukihiro; Hobara, Yasuhide; Sakamoto, Yuji; Yoshita, Kengo

In order to study the generation mechanism of Transient Luminous Events (TLEs), global oc-currence rates and distributions of lightning and TLEs, and the relationship between lightning, TLEs and Terrestrial Gamma-ray Flashes (TGFs), we will carry out the lightning and TLE observation at Exposed Facility of Japanese Experiment Module (JEM-EF) of International Space Station (ISS). In this mission named JEM-GLIMS (Global Lightning and sprIte Mea-surementS on JEM-EF) two kinds of optical instruments and two sets of radio receivers will be integrated into the Multi mission Consolidated Equipment (MCE) which is the bus system and will be installed at JEM-EF. The optical instruments consist of two wide FOV CMOS cameras and six wide FOV photometers, and all these optical instruments are pointed to the nadir direction. CMOS cameras named LSI (Lightning and Sprite Imager) use the STAR-250 device as a detector, which has 512x512 pixels and 25x25 µm pixel size, and have 28.3x28.3 deg. FOV. One CMOS camera with a wide band filter (730-830 nm) mainly measures lightning emission, while another camera with a narrowband filter (766+/-6 nm) mainly measures TLE emission. Five of six photometers named as PH have 42.7 deg. FOV and use photomultiplier tube (PMT) as a photon detector. They equip band-pass filters (150-280 nm, 316+/-5 nm, 337+/-5 nm, 392+/-5 nm, and 762+/-5 nm) for the absolute intensity measurement of the TLE emission. One of six photometers equips a wide-band filter (600-900 nm) to detect light-ning occurring within 86.8 deg. FOV. These output signals will be recorded with the sampling frequency of 20 kHz with a 12-bit resolution. One of two electromagnetic instruments is a VLF receiver (VLFR), which measures electromagnetic waves in the frequency range of 1-40 kHz with 16-bit resolution. Another instrument is VHF interferometer (VITF), which measures VHF pulses generated lightning discharge in the frequency range of 70-100 MHz. JEM-GIMS will be launched in 2011. We

Nonadherence with Employer-Mandated Sleep Apnea Treatment and Increased Risk of Serious Truck Crashes

PubMed Central

Burks, Stephen V.; Anderson, Jon E.; Bombyk, Matthew; Haider, Rebecca; Ganzhorn, Derek; Jiao, Xueyang; Lewis, Connor; Lexvold, Andrew; Liu, Hong; Ning, Jiachen; Toll, Alice; Hickman, Jeffrey S.; Mabry, Erin; Berger, Mark; Malhotra, Atul; Czeisler, Charles A.; Kales, Stefanos N.

2016-01-01

private. Commentary: A commentary on this article appears in this issue on page 961. Citation: Burks SV, Anderson JE, Bombyk M, Haider R, Ganzhorn D, Jiao X, Lewis C, Lexvold A, Liu H, Ning J, Toll A, Hickman JS, Mabry E, Berger M, Malhotra A, Czeisler CA, Kales SN. Nonadherence with employer-mandated sleep apnea treatment and increased risk of serious truck crashes. SLEEP 2016;39(5):967–975. PMID:27070139

Observations of Jupiter From Cassini, Galileo and Hst

NASA Astrophysics Data System (ADS)

West, R. A.

This report summarizes recent scientific results for JupiterSs atmosphere from instru- ments sensing ultraviolet and visible wavelengths (to the CCD sensitivity limit near 1000 nm) on the Hubble Space Telescope and the Galileo and Cassini spacecraft. Most prominent among these have been images of the aurora which show the morphology and temporal behavior of the main oval as well as active regions inside the oval and Galilean satellite flux tube and wake interactions. Galileo and especially Cassini ul- traviolet spectrometers added to this picture by revealing auroral brightenings and, along with in situ plasma instruments establish a link between solar wind events and jovian auroral activity. Cassini spectra of the quiescent day and night glow provide compelling evidence for a dominating influence of soft electron excitation (probably secondary electrons) at high altitude and limit the possible contribution of fluores- cence to about 15 percent of the short-wave UV flux. Although fluorescence does not dominate the emission process sunlight is the ultimate source of the emission via photo excitation of vibrationally excited H2. Energetic H2 molecules can be excited by more abundant longer wavelength solar photons. This new insight goes a long way toward resolving the mystery of how the abundant UV flux is produced. At longer wave- lengths (200-300 nm) images by HST and by the Cassini ISS instrument reveal haze morphology and motions in the polar stratosphere. The most striking new discovery in that realm proved to be the formation and evolution of a large dark oval near latitude +60, about the same size and shape as JupiterSs Great Red Spot but ephemeral and invisible at longer wavelengths. Galileo and Cassini made new observations of light- ning. Lightning on the night side can be mapped to cloud features seen on the day side and illuminated by light from Io on the night side. High spatial resolution images in methane bands made by Galileo and Cassini are

Les traumatismes de l’étage antérieur de la base du crane: à propos d'une série de 136 cas

PubMed Central

Bouchaouch, Abdelali; Hassani, Fahd Derkaoui; Abboud, Hilal; Mukengeshay, Jeff Ntalaja; El Fatemi, Nizare; Gana, Rachid; El Maaqili, Moulay Rchid; El Abbadi, Najia; Bellakhdar, Fouad

2015-01-01

Les traumatismes de l’étage antérieur de la base du crâne représentent 15 à 20% des traumatismes crâniens en général. Ils menacent les structures neuro-encéphaliques sus jacentes et sont très souvent responsables de brèches ostéo-méningées exposant au risque infectieux. Notre travail a concerné 136 dossiers exploitables de traumatisme de l’étage antérieur de la base du crâne colligés sur une période de 10 ans entre janvier 2003 et décembre 2012. Le diagnostic a été suspecté devant les signes cliniques évocateurs (ecchymose péri-orbitaire, rhinorrhée…) et a été confirmé dans la plupart des cas par la TDM. Le traitement idéal est la fermeture chirurgicale de la brèche en association aux moyens médicaux (vaccination, anti-épileptiques, mesures de réanimation…) Le moment idéal de la réparation est au-delà de la 72ème heure après la diminution de l'oedème cérébral en cas d'absence d'une lésion intracrânienne nécessitant une intervention en urgence. Notre équipe ne pratiquant pas la voie endoscopique, l'abord frontal est souvent indiqué. Le pronostic dépend des lésions cérébrales associées et surtout de la présence d'une brèche dont le diagnostic et la réparation doivent être les plus rapides et les plus précis possibles. Ainsi toute rhinorrhée post-traumatique nécessite une exploration systématique, le timing idéal: c'est la disparition de l'oedème cérébral pour faciliter l'exploration, ceci est en général possible à partir de la 72ème heure sauf dans les cas associés à une autre lésion intra crânienne nécessitant une exploration en urgence. PMID:26327992

The European Water Framework Directive: Challenges For A New Type of Social and Policy Analysis

NASA Astrophysics Data System (ADS)

Pahl-Wostl, C.

Water resources managment is facing increasing uncertainties in all areas. Socio- economic boundary conditions change quickly and require more flexible management strategies. Climate change, for example results in an increase in uncertainties, in par- ticular extreme events. Given the fact that current management practices deal with extreme events by designing the technical systems to manage the most extreme of all cases (e.g. higher dams for the protection against extreme floods, larger water reser- voirs for droughts and to meet daily peak demand) a serious problem is posed for long-term planning and risk management. Engineering planning has perceived the hu- man dimension as exogenous boundary conditions. Legislation focused largely on the environmental and technological dimensions that set limits and prescribe new tech- nologies without taking the importance of institutional change into account. However, technology is only the "hardware" and it is becoming increasingly obvious that the "software", the social dimension, has to become part of planning and management processes. Hence, the inclusion of the human dimension into integrated models and processes will be valuable in supporting the introduction of new elements into plan- ning processes in water resources management. With the European Water Framework Directive environmental policy enters a new era. The traditional approach to solving isolated environmental problems with technological fixes and end-of-pipe solutions has started to shift towards a more thoughtful attitude which involves the development of integrated approaches to problem solving. The WFD introduces the river basin as the management unit, thus following the experience of some European countries (e.g. France) and the example of the management of some international rivers (e.g. the Rhine). Overall the WFD represents a general shift towards a polycentric understand- ing of policy making that requires the involvement of stakeholders as active

LLE Review 83, Quarterly Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2000-12-01

This volume of the LLE Review, covering April-June 2000, features an article by F. J. Marshall, T. Ohki, D. McInnis, Z. Ninkov, and J. Carbone, who detail the conversion of the OMEGA time-integrated x-ray diagnostics to electronic readout using direct-detection x-ray cameras [charge-injection devices (CID's)]. Pinhole and x-ray microscope images are shown along with inferred calibration measurements of the CID cameras. Currently, the same cameras are being used to obtain x-ray spectra in a TIM-based spectrometer, extending their use to all time-integrated imaging and spectroscopic x-ray instruments used on OMEGA. Additional highlights of the research presented in this issue are:more » (1) V. A. Smalyuk, B. Yaakobi, F. J. Marshall, and D. D. Meyerhofer investigate the spatial structure of the temperature and density of target-shell plasmas at peak compression (stagnation). This is accomplished by examining the energy dependence of the x-ray emission using narrow-band x-ray filters and the known absorption properties of the shell dopant (Ti). (2) F. Sequin, C. K. Ll, D. G. Hicks, J. A. Frenje, K. M. Green, R. D. Petrasso, J. M. Soures, V. Yu. Glebov, C. Stoeckl, P. B. Radha, D. D. Meyerhofer, S. Roberts, C. Sorce, T. C. Sangster, M. D. Cable, S. Padalino, and K. Fletcher detail the physics and instrumentation used to obtain and interpret secondary D-{sup 3}He proton spectra from current gas-filled-target and future cryogenic-target experiments. Through a novel extension of existing charged-particle detection techniques with track detectors, the authors demonstrate the ability to obtain secondary proton spectra with increased sensitivity. (3) M. Guardelben, L. Ning, N. Jain, D. Battaglia, and K. Marshall compare the utility of a novel liquid-crystal-based, point-diffraction interferometer (LCPDI) with the commercial standard phase-shifting interferometer and conclude that the LCPDI is a viable low-cost alternative. (4) A. B. Shorey, S. D. Jacobs, W. I. Kordonski

Patients' Acceptance of Smartphone Health Technology for Chronic Disease Management: A Theoretical Model and Empirical Test.

PubMed

Dou, Kaili; Yu, Ping; Deng, Ning; Liu, Fang; Guan, YingPing; Li, Zhenye; Ji, Yumeng; Du, Ningkai; Lu, Xudong; Duan, Huilong

2017-12-06

and actual use of smartphone health apps for chronic disease management. This study developed a theoretical model to predict patients' acceptance of smartphone health technology for chronic disease management. Although resistance to change is a significant barrier to technology acceptance, careful management of doctor-patient relationship, and raising patients' awareness of the negative effect of chronic disease can negate the effect of resistance and encourage acceptance and use of smartphone health technology to support chronic disease management for patients in the community. ©Kaili Dou, Ping Yu, Ning Deng, Fang Liu, YingPing Guan, Zhenye Li, Yumeng Ji, Ningkai Du, Xudong Lu, Huilong Duan. Originally published in JMIR Mhealth and Uhealth (http://mhealth.jmir.org), 06.12.2017.

Rayleigh-wave phase-velocity maps and three-dimensional shear velocity structure of the western US from local non-plane surface wave tomography

USGS Publications Warehouse

Pollitz, F.F.; Snoke, J. Arthur

2010-01-01

We utilize two-and-three-quarter years of vertical-component recordings made by the Transportable Array (TA) component of Earthscope to constrain three-dimensional (3-D) seismic shear wave velocity structure in the upper 200 km of the western United States. Single-taper spectral estimation is used to compile measurements of complex spectral amplitudes from 44 317 seismograms generated by 123 teleseismic events. In the first step employed to determine the Rayleigh-wave phase-velocity structure, we implement a new tomographic method, which is simpler and more robust than scattering-based methods (e.g. multi-plane surface wave tomography). The TA is effectively implemented as a large number of local arrays by defining a horizontal Gaussian smoothing distance that weights observations near a given target point. The complex spectral-amplitude measurements are interpreted with the spherical Helmholtz equation using local observations about a succession of target points, resulting in Rayleigh-wave phase-velocity maps at periods over the range of 18–125 s. The derived maps depend on the form of local fits to the Helmholtz equation, which generally involve the nonplane-wave solutions of Friederich et al. In a second step, the phase-velocity maps are used to derive 3-D shear velocity structure. The 3-D velocity images confirm details witnessed in prior body-wave and surface-wave studies and reveal new structures, including a deep (>100 km deep) high-velocity lineament, of width ∼200 km, stretching from the southern Great Valley to northern Utah that may be a relic of plate subduction or, alternatively, either a remnant of the Mojave Precambrian Province or a mantle downwelling. Mantle seismic velocity is highly correlated with heat flow, Holocene volcanism, elastic plate thickness and seismicity. This suggests that shallow mantle structure provides the heat source for associated magmatism, as well as thinning of the thermal lithosphere, leading to relatively high

Monitoring lightning from space with TARANIS

NASA Astrophysics Data System (ADS)

Farges, T.; Blanc, E.; Pinçon, J.

2010-12-01

Some recent space experiments, e.g. OTD, LIS, show the large interest of lightning monitoring from space and the efficiency of optical measurement. Future instrumentations are now defined for the next generation of geostationary meteorology satellites. Calibration of these instruments requires ground truth events provided by lightning location networks, as NLDN in US, and EUCLID or LINET in Europe, using electromagnetic observations at a regional scale. One of the most challenging objectives is the continuous monitoring of the lightning activity over the tropical zone (Africa, America, and Indonesia). However, one difficulty is the lack of lightning location networks at regional scale in these areas to validate the data quality. TARANIS (Tool for the Analysis of Radiations from lightNings and Sprites) is a CNES micro satellite project. It is dedicated to the study of impulsive transfers of energy, between the Earth atmosphere and the space environment, from nadir observations of Transient Luminous Events (TLEs), Terrestrial Gamma ray Flashes (TGFs) and other possible associated emissions. Its orbit will be sun-synchronous at 10:30 local time; its altitude will be 700 km. Its lifetime will be nominally 2 years. Its payload is composed of several electromagnetic instruments in different wavelengths: X and gamma-ray detectors, optical cameras and photometers, electromagnetic wave sensors from DC to 30 MHz completed by high energy electron detectors. The optical instrument includes 2 cameras and 4 photometers. All sensors are equipped with filters for sprite and lightning differentiation. The filters of cameras are designed for sprite and lightning observations at 762 nm and 777 nm respectively. However, differently from OTD or LIS instruments, the filter bandwidth and the exposure time (respectively 10 nm and 91 ms) prevent lightning optical observations during daytime. The camera field of view is a square of 500 km at ground level with a spatial sampling frequency of

Eolian and riverine contributions to central-Mediterranean sediments: a high-resolution Holocene record

NASA Astrophysics Data System (ADS)

Wu, Jiawang; Böning, Philipp; Pahnke, Katharina; Tachikawa, Kazuyo; De Lange, Gert

2017-04-01

proxies (Ti/Al, K/Al, Y/Sc, Ce/Ni, and Zr/Cr) reflect concordant changes in the three endmembers at high resolution. These indicate that enhanced precipitation and associated detrital fluxes must have occurred not only from North Africa but also from the northern EMS borderlands. Changes in the Libyan-Tunisian riverine contribution show a close correspondence with hydroclimate evolution of NW Libya on the one hand, and with prominent riverine contribution from the northern EMS borderlands on the other (Wu et al., 2016). Wu, J., Böning, P., Pahnke, K., Tachikawa, K., De Lange, G.J., 2016. Unraveling North-African riverine and eolian contributions to central Mediterranean sediments during Holocene sapropel S1 formation. Quaternary Science reviews 152, 31-48.

Causes de décès des patients infectés par le VIH dans le Centre tunisien

PubMed Central

Chelli, Jihène; Bellazreg, Foued; Aouem, Abir; Hattab, Zouhour; Mesmia, Hèla; Lasfar, Nadia Ben; Hachfi, Wissem; Masmoudi, Tasnim; Chakroun, Mohamed; Letaief, Amel

2016-01-01

La trithérapie antirétrovirale a contribué à une baisse considérable de la mortalité liée au VIH. Les causes de décès sont dominées par les infections opportunistes dans les pays en voie de développement et par les maladies cardiovasculaires et les cancers dans les pays développés. L’objectif était de déterminer les causes et les facteurs de risque de décès des patients infectés par le VIH dans le Centre Tunisien. Une étude transversale auprès des patients infectés par le VIH âgés de plus de 15 ans suivis à Sousse et à Monastir entre 2000 et 2014. Le décès était considéré lié au VIH si la cause était un évènement classant SIDA ou s’il était la conséquence d’une infection opportuniste d’étiologie indéterminée avec des CD4 < 50/mm3, non lié au VIH si la cause n’était pas un évènement classant SIDA, et de cause inconnue si aucune information n’était disponible. Deux cents treize patients, 130 hommes (61%) et 83 femmes (39%), d’âge moyen 40±11 ans ont été inclus. Cinquante quatre patients sont décédés, avec une mortalité de 5,4/100 patients-années. La mortalité annuelle a baissé de 5,8% en 2000-2003 à 2,3% en 2012-2014. La survie était de 72% à 5 ans et de 67% à 10 ans. Les décès étaient liés au VIH dans 70,4% des cas. Les causes de décès les plus fréquentes étaient la pneumocystose pulmonaire et la cryptococcose neuroméningée dans 6 cas (11%) chacune. Les facteurs de risque de décès étaient les antécédents d’infections opportunistes, la durée de la trithérapie antirétrovirale < 12 mois et le tabagisme. Le renforcement du dépistage, l’initiation précoce de la trithérapie antirétrovirale, et la lutte contre le tabagisme sont nécessaires afin de réduire la mortalité chez les patients infectés par le VIH en Tunisie. PMID:28292068

Voting Systems for Environmental Decisions

PubMed Central

BURGMAN, MARK A; REGAN, HELEN M; MAGUIRE, LYNN A; COLYVAN, MARK; JUSTUS, JAMES; MARTIN, TARA G; ROTHLEY, KRIS

2014-01-01

Voting systems aggregate preferences efficiently and are often used for deciding conservation priorities. Desirable characteristics of voting systems include transitivity, completeness, and Pareto optimality, among others. Voting systems that are common and potentially useful for environmental decision making include simple majority, approval, and preferential voting. Unfortunately, no voting system can guarantee an outcome, while also satisfying a range of very reasonable performance criteria. Furthermore, voting methods may be manipulated by decision makers and strategic voters if they have knowledge of the voting patterns and alliances of others in the voting populations. The difficult properties of voting systems arise in routine decision making when there are multiple criteria and management alternatives. Because each method has flaws, we do not endorse one method. Instead, we urge organizers to be transparent about the properties of proposed voting systems and to offer participants the opportunity to approve the voting system as part of the ground rules for operation of a group. Sistemas de Votación para Decisiones Ambientales Resumen Los sistemas de votación agregan preferencias eficientemente y muy seguido se usan para decidir prioridades de conservación. Las características deseables de un sistema de votación incluyen la transitividad, lo completo que sean y la optimalidad de Pareto, entre otras. Los sistemas de votación que son comunes y potencialmente útiles para la toma de decisiones ambientales incluyen simple mayoría, aprobación y votación preferencial. Desafortunadamente, ningún sistema de votación puede garantizar un resultado y a la vez satisfacer un rango de criterios de desempeño muy razonable. Además, los métodos de votación pueden manipularse por los que toman las decisiones y votantes estratégicos si tienen el conocimiento de los patrones de votación y de las alianzas entre miembros dentro de las poblaciones votantes. Las

[2000 year history of tonsillectomy. Images from the history of otorhinolaryngology, highlighted by instruments from the collection of the German Medical History Museum in Ingolstadt].

PubMed

Feldmann, H

1997-12-01

The etymology of the anatomical terms and their use in history are elucidated: "Tonsil" (from Latin tonsa = the oar) in use since Celsus (about 40 AD). The Greek terms of that time, "antiádes", "paristhmia", were not adopted in later medical terminology. "Amygdala" (Greek/Latin = the almond) was introduced by Vesalius in 1543. Vesalius was also the first to depict the tonsils in a specimen of the whole human body; Duverney (1761) gives the first exact depiction of the pharyngeal region. Special anatomical and histological studies of the tonsils were carried out in the 19 century. Cornelius Celsus in Rome (about 40 AD) described the blunt removal of the tonsils by use of the finger. This method was favoured anew by numerous laryngologists at the beginning of the 20th century when it had been realised that a gentle enucleation of the entire tonsil including its capsule was advisable against cutting off a slice, but before long this procedure was discarded again for hygienic reasons. Precursors of special instruments for tonsillectomy were instruments designed for shortening the uvula: uvulotomy. Paré (1564) and Scultetus (1655) devised instruments that permitted placing a thread shaped like a snare around the uvula and cutting it off by strangulation. Hildanus (1646), Scultetus (1655) and Heister (1763) presented an instrument of the guillotine-type for uvulotomy. This instrument was modified by P. S. Physick (USA 1828) and used for tonsillotomy. It became the prototype for a number of similar instruments which were to follow: W. M. F. Fahnestock (USA 1832). M. Mackenzie (London 1880), G. Sluder (USA 1911). Besides these guillotines snares were also perfected and used for tonsillotomy, e.g. by W. Brünings (1908). The concentration on tonsillotomy aimed at performing the operation as quickly as possible, especially in children, as it was not yet possible to sustain general anaesthesia for a longer period of time while doing surgery in the pharynx. The operation of

Numerical simulation of vertical transport and oxidation of methane in Arctic Ocean

NASA Astrophysics Data System (ADS)

Stepanenko, Victor; Iakovlev, Nikolai

2013-04-01

available in situ measurements. The components of methane budget in water column are calculated, and the ratio of bubble flux to turbulent one inter alia. A number of additional experiments are performed to assess the sensitivity of methane budget components to variation of uncertain parameters of the model (such as initial bubble radius). References 1) Shakhova, N., I.Semiletov, A.Salyuk, V.Yusupov, D.Kosmach, and Ö.Gustafsson. Extensive Methane Venting to the Atmosphere from Sediments of the East Siberian Arctic Shelf. Science 5 March 2010: Vol. 327 no. 5970 pp. 1246-1250 DOI: 10.1126/science.1182221. 2) Biastoch, A., T. Treude, L. H. Rüpke, U. Riebesell, C. Roth, E. B. Burwicz, W. Park, M. Latif, C. W. Büning, G. Madec, and K. Wallmann. Rising Arctic Ocean temperatures cause gas hydrate destabilization and ocean acidification. Geophysical Research Letters, Vol. 38, L08602, doi:10.1029/2011GL047222,2011.

Hydrological survey and modeling of a landslide in Borgata Gros (Bussoleno, Italy)

NASA Astrophysics Data System (ADS)

Pognant, Davide; Canone, Davide; Previati, Maurizio; Bevilacqua, Ivan

2010-05-01

The instability of the slopes is a problem of major concern in the mountain areas. The aim of this work is the individuation of the depth of soil layers with low safety coefficient (Fs), through the evaluation of the Infinity slope stability under steady unsaturated seepage conditions model proposed by Ning Lu and Jonathan Godt (2008), employing an experimental dataset. The infinite slope stability under steady unsaturated conditions proposed by Lu and Godt, (2008) is a model that simulates the soil behavior during precipitations in function of hydrological and physical parameters of soil, such as porosity, texture, bulk density and hydraulic conductivity. The data were collected on a landslide in Borgata Gros (Bussoleno, Torino) originated during the flood occurred in Northern Italy in the Autumn 2000. The intense and abundant precipitations caused the erosion of a big part of the top soil and the detachment of a landslide in correspondence of the change of inclination in a meadow facing Borgata Gros. The land slide interested an area of 10000 m2, with a volume of material estimated in 8000-9000 m3. Field infiltration tests were performed on 15 stations and soil samples were collected for the determination of the physical properties of the soil. Furthermore a campaign of water contents measurements by TDR (Time Domain Reflectometry) was performed from May to October 2008. A total of 45 TDR probes were installed on the land slide area. Each station is composed by three vertically installed probes with length of 15 cm, 30 cm and 60 cm. The hydraulic conductivity was calculated fitting the measured infiltrations rates and water content data on the Green and Ampt (1911) infiltration model. The Lu and Godt, (2008) model has been programmed to show the trend of Fs for five values of steady infiltration. Four of them were referred to precipitations of different intensity taken by the meteorological station of Bussoleno, and the fifth value was imposed equal to a

Cross Sections of P-Induced Reactions up to 100 MeV for the Interpretation of Solar Cosmic Ray Produced Nuclides

NASA Astrophysics Data System (ADS)

Schiekel, T.; Rosel, R.; Herpers, U.; Bodemann, R.; Michel, R.; Dittrich, B.; Hofmann, H. J.; Suter, M.; Wolfli, W.; Holmqvist, B.; Conde, H.; Malmborg, P.

1992-07-01

Integral excitation functions for the production of residual nuclides by proton-induced reactions are the basic data for an accurate modelling of the interactions of solar cosmic ray (SCR) particles with extraterrestrial matter. Due to the relatively low energies (<200 MeV/A) of SCR particles the production of nuclear active secondary particles can be widely neglected and theoretical production rate depth profiles can be calculated by simply folding the depth dependent SCR spectra with thin target cross sections of the underlying nuclear reactions. The accuracy of such calculations exclusively depends on the quality of the available cross sections. For many nuclides, in particular for long-lived radionuclides and stable rare gas isotopes, the exis- ting cross section database is neither comprehensive nor reliable. Therefore, we started a series of experiments to improve this situation. Eighteen elements (C, N as Si3N4, O as SiO2, Mg, Al, Si, Ti, V, Mn as Mn/Ni-alloy, Fe, Co, Ni, Cu, Zr, Nb, Rh, Ba as Ba-contai- ning glass, and Au) were irradiated with 94 and 99 MeV protons at the external beam of the TSL-cyclotron at Uppsala. Cross sections were determined using the stacked foil technique. Beam monitoring was done by investigating the production of ^22Na from Al, for which evaluated cross sections exist. Residual nuclides were measured by X-, gamma- and accelerator-mass spectrometry. In order to check the quality of our experimental procedure some target elements (22 <= Z <= 28) were included in the new exper- iments, which had been formerly irradiated at Julich, at Louvain La Neuve, and at IPN Orsay. Comparisons between the earlier measurements (1,2) and the new cross sections showed excellent agreement. Up to now, cross sections were measured for more than 120 different reactions. Here, we report on the results obtained for the target elements C, N, O, Mg, Al, and Si. The status of experimental excitation functions for the production of some radionuclides

Quality and Dose Optimized CT Trauma Protocol - Recommendation from a University Level-I Trauma Center.

PubMed

Kahn, Johannes; Kaul, David; Böning, Georg; Rotzinger, Roman; Freyhardt, Patrick; Schwabe, Philipp; Maurer, Martin H; Renz, Diane Miriam; Streitparth, Florian

2017-09-01

) according to the examined body region (head, lung, body, bone) combined with a split bolus CA injection protocol allows for a high-quality CT examination and a relevant reduction of radiation exposure in the examination of polytraumatized patients Key Points   · Dedicated adaption of the CT trauma protocol allows for an optimized examination.. · Different levels of iterative reconstruction, tube voltage and the CA injection protocol are crucial.. · A reduction of radiation exposure of more than 40 % with good image quality is possible.. Citation Format · Kahn J, Kaul D, Böning G et al. Quality and Dose Optimized CT Trauma Protocol - Recommendation from a University Level-I Trauma Center. Fortschr Röntgenstr 2017; 189: 844 - 854. © Georg Thieme Verlag KG Stuttgart · New York.

[The method of tonifying kidneys and activating blood circulation increases testosterone secretion index in late-onset hypogonadism males with kidney deficiency].

PubMed

Zhou, Shao-Hu; Weng, Zhi-Wei; Li, Tang-Lin

2013-07-01

To investigate the effect of the method of tonifying the kidney and activating blood circulation on the testosterone secretion index (TSI) in late-onset hypogonadism (LOH) male patients with kidney deficiency and its possible mechanisms. We screened 60 LOH male patients with kidney deficiency based on the scores on Partial Androgen Deficiency in Aging Males (PADAM), the levels of serum total testosterone (TT) and luteinizing hormone (LH), and TSI (TT/LH). We randomly divided the patients into a Nan Geng Ning (NGN) group (n = 40, aged 55.02 +/- 11.37 years) and a control group (n = 20, aged 54.56 +/- 12.12 years) to be treated orally with NGN decoction and testosterone undecanoate capsules, respectively, both for 12 consecutive weeks. We obtained the scores on psychological status, physical status and sexual function and observed the changes in serum TT, LH and TSI after 4, 8 and 12 weeks of treatment. Compared with the baseline, both the NGN and control groups showed a significant reduction after 12 weeks of medication in the LH level ([5.32 +/- 2.08] vs [4.89 +/- 1.46] IU/L and [5.36 +/- 2.07] vs [4.81 +/- 1.75] IU/L, P < 0.05), psychological status score (5.2 +/- 1.3 vs 2.7 +/- 1.4 and 4.8 +/- 2.2 vs 2.9 +/- 1.2, P < 0.05), physical status score (6.9 +/- 2.5 vs 2.9 +/- 1.6 and 7.1 +/- 2.7 vs 3.1 +/- 1.5, P < 0.05) and sexual function score (10.2 +/- 3.3 vs 4.5 +/- 2.9 and 9.8 +/- 3.1 vs 4.8 +/- 3.0, P < 0.05), but a remarkable increase in the TT level ([11.13 +/- 0.69] vs [14.55 +/- 0.75] nmol/L and [10.99 +/- 0.74] vs [14.74 +/- 0.83] nmol/L, P < 0.05) and TSI ([2.14 +/- 0.65] vs [2.99 +/- 0.72] nmol/IU and ([2.05 +/- 0.73] vs [3.11 +/- 0.65] nmol/IU, P < 0.05). However, no significant differences were found between the NGN and control groups at 12 weeks in LH ([4.89 +/- 1.46] vs [4.81 +/- 1.75] IU/L, P > 0.05), TT ([14.55 +/- 0.75] vs [14.74 +/- 0.83] nmol/L, P > 0.05), TSI ([2.99 +/- 0.72] vs [3.11 +/- 0.65] nmol/IU, P > 0.05), psychological status score (2

Development of Whole Slide Imaging on Smartphones and Evaluation With ThinPrep Cytology Test Samples: Follow-Up Study.

PubMed

Huang, Yu-Ning; Peng, Xing-Chun; Ma, Shuoxin; Yu, Hong; Jin, Yu-Biao; Zheng, Jun; Fu, Guo-Hui

2018-04-04

demonstrated a positive relationship with the central processing unit frequency but to a smaller degree than expected and was highly model-dependent. The virtual slides produced by sWSI on Android and iOS of ThinPrep cytology test samples achieved similar high quality. Using optical microscopy as the ground truth, pathologists made a correct diagnosis on 87.5% (175/200) of the cases with sWSI virtual slides. Depending on the sWSI version and the pathologist in charge, the kappa value varied between .70 and .82. All participating pathologists considered the quality of the sWSI virtual slides in the experiment to be adequate for routine usage. Limited by hardware and operating system support, the performance of sWSI on mainstream Android smartphones did not fully match the iOS version. However, in practice, this difference was not significant, and both were adequate for digitizing most of the sample types for telepathology consultation. ©Yu-Ning Huang, Xing-Chun Peng, Shuoxin Ma, Hong Yu, Yu-Biao Jin, Jun Zheng, Guo-Hui Fu. Originally published in JMIR Mhealth and Uhealth (http://mhealth.jmir.org), 04.04.2018.

A Global Modeling Framework for Plasma Kinetics: Development and Applications

NASA Astrophysics Data System (ADS)

Parsey, Guy Morland

The modern study of plasmas, and applications thereof, has developed synchronously with com- puter capabilities since the mid-1950s. Complexities inherent to these charged-particle, many- body, systems have resulted in the development of multiple simulation methods (particle-in-cell, fluid, global modeling, etc.) in order to both explain observed phenomena and predict outcomes of plasma applications. Recognizing that different algorithms are chosen to best address specific topics of interest, this thesis centers around the development of an open-source global model frame- work for the focused study of non-equilibrium plasma kinetics. After verification and validation of the framework, it was used to study two physical phenomena: plasma-assisted combustion and the recently proposed optically-pumped rare gas metastable laser. Global models permeate chemistry and plasma science, relying on spatial averaging to focus attention on the dynamics of reaction networks. Defined by a set of species continuity and energy conservation equations, the required data and constructed systems are conceptually similar across most applications, providing a light platform for exploratory and result-search parameter scan- ning. Unfortunately, it is common practice for custom code to be developed for each application-- an enormous duplication of effort which negatively affects the quality of the software produced. Presented herein, the Python-based Kinetic Global Modeling framework (KGMf) was designed to support all modeling phases: collection and analysis of reaction data, construction of an exportable system of model ODEs, and a platform for interactive evaluation and post-processing analysis. A symbolic ODE system is constructed for interactive manipulation and generation of a Jacobian, both of which are compiled as operation-optimized C-code. Plasma-assisted combustion and ignition (PAC/PAI) embody the modernization of burning fuel by opening up new avenues of control and optimization

Use of the SAR (Synthetic Aperture Radar) P band for detection of the Moche and Lambayeque canal networks in the Apurlec region, Perù

NASA Astrophysics Data System (ADS)

Ilaria Pannaccione Apa, Maria; Santovito, Maria Rosaria; Pica, Giulia; Catapano, Ilaria; Fornaro, Gianfranco; Lanari, Riccardo; Soldovieri, Francesco; Wester La Torre, Carlos; Fernandez Manayalle, Marco Antonio; Longo, Francesco; Facchinetti, Claudia; Formaro, Roberto

2016-04-01

, glaciers investigation, biomass monitoring, detection of buried targets. Its extension to non-civil application concerns sub-surface target detection and foliage penetration (FOPEN). In order to achieve the flexibility to face all the above mentioned fields of application, the CORISTA system has been designed as a multi-mode and multi-frequency radar. Multimode stands for the functionality of the system both as Sounder and Imager. In addition, P-band radar is a multi-frequency instrument, since it is designed to work in three different frequency bands, as mentioned above: lower frequency band is used in sounder operative mode, higher frequency in imager operative mode. In the Imager operative mode, low resolution and high resolution capabilities are implemented. The data collected by the radar system have been processed using a model-based microwave tomographic approach, recently developed by IREA-CNR, with the aim to enhance the interpretability of the raw-data radar images. Currently, the non-invasive SAR P band application is under evaluation for testing in the Northern Coast of Perù, in collaboration with the Museo Arqueológico Nacional Brüning. The project will aim to recognize the subsurface ancient Moche (100-700 d.C.) and Lambayeque (700-1375 d.C.) canal networks, whose water supply comes from the Canal Taymi, started to be dug by the Mochicas, still in use by local communities.

Decoding recent mud-volcano activity in the westernmost Mediterranean: Evidence from sediment/porewater data and geochemical modeling

NASA Astrophysics Data System (ADS)

López-Rodríguez, Carmina; Martínez-Ruíz, Francisca; Mogollón, José M.; Comas, Menchu; Nieto, Fernando; Böning, Philipp; Pahnke, Katharina; Sapart, Célia; De Lange, Gert J.

2017-04-01

-like pore water composition in the uppermost part of the mud breccia together with the abrupt transition to the interval with typical deep-source fluid composition, all point to a very recent mud and associated gas-expulsion. Such outburst leads to the downward intrusion of seawater coincident with the episode of gas-bubble expulsion. A numerical transport-reaction model has been applied to the distinctively kink-shaped pore water Cl, SO42-CH4, and other profiles in core GP05PC, to derive the very recent timing for this eruption event (López-Rodríguez et al., 2017). References: Jurado, M. J. and Comas, M. C. (1992). Well log interpretation and seismic character of the Cenozoic sequence in the Northern Alboran Sea, Geo-Marine Letters, 12, 129-136. López-Rodríguez, C., Martínez-Ruíz, F., Mogollón, J.M., Comas, M. Nieto, F, Böning P.H., Pahnke, K., Sapart, C. and De Lange, G.J. (2017). Evidence for a 2000 AD +/- 3 yr mud/methane discharge event in the westernmost Mediterranean (based on sediment/pore water data and modelling). Manuscript submitted for publication.

The design of Janus, the visible camera for the ESA JUICE mission

NASA Astrophysics Data System (ADS)

Della Corte, Vincenzo; Schmitz, Nicole; Castro, José Maria; Leese, Mark; Debei, Stefano; Magrin, Demetrio; Michalik, Harald

2014-05-01

The JUICE (JUpiter ICy moons Explorer) mission was selected in May 2012 as the first Large mission in the frame of the ESA Cosmic Vision 2015-2025 program. The mission is aimed at an in-depth characterization of the Jovian system, with an operational phase of about 3.5 years. During the whole operational phase, JANUS (Jovis, Amorum ac Natorum Undique Scrutator) will acquire panchromatic and narrow-band images in the visible - NIR range of many targets within the Jovian system: the Galilean satellites surfaces and exospheres, Jupiter atmosphere, minor and irregular satellites, the ring system. After a long trade-off between different design solutions, based on performance requirements, mission design and constraints, the present JANUS design has been based on the following architectural choices detailed below. A catoptric telescope with excellent optical quality is coupled with a framing CMOS detector, avoiding any scan-ning mechanism or operational requirement on the S/C. The three mirror anastigmatic (TMA) off-axis design with F#=4.67 allows an MTF between 62% and 72% at Nyquist, with good straylight rejection. The detector is the CIS115 from e2v; it is a CMOS with a squared 7 micron pixel pitch and image format of 2000x1504. It performs a high readout rate of up to 40 Mpixel/s, high quantum efficiency and low readout noise and dark signal. Fine tuning of instrument parameters allows to perform both high resolution targeted observations and lower resolution global coverage of targets, as required to meet science objectives. The IFoV (Fieldo of View per pixel) is 15 microrad, al-lowing sampling of 7.5 m/pixel from 500 km and 15 km/pixel from 10E6 km, while the FoV is 1.72x1.29 deg. The acquisition parameters allow to cope with the many different observation requirements and conditions that JANUS will face. Design of the two electronics units (a proximity electronics controlling the detector and a main electronics controlling the instrument and the interfaces with

Ionospheric Anomalies of the 2011 Tohoku Earthquake with Multiple Observations during Magnetic Storm Phase

NASA Astrophysics Data System (ADS)

Liu, Yang

2017-04-01

days. Associated with geomagnetic storm at similar time, radio occultation data provided by COSMIC were deeply investigated within the whole month. It's quite different that the storm or earthquake didn't trigger scintillation burst. This is probably due to the storm occurrence local time was in noon sector, which has little impact on ionospheric irregularities increase, but help to enhance the effect of westward electricity, which on the other hand diminishes scintillation bubbles (Li et al 2008). A small geomagnetic disturbance was also found almost a week prior to the earthquake, the relationship of this event to the major earthquake is worth further discussion. Similar analysis of GNSS TECs have been done, the results indicated that it can be also referred as precursor to the major earthquake. Li G, Ning B, Zhao B, et al. Effects of geomagnetic storm on GPS ionospheric scintillations at Sanya[J]. Journal of Atmospheric and Solar-Terrestrial Physics, 2008, 70(7):1034-1045. Liu J Y, Chen Y I, Chuo Y J, et al. A statistical investigation of pre-earthquake ionospheric anomaly[J]. Journal of Geophysical Research Atmospheres, 2006, 111(A5). Liu J Y, Sun Y Y. Seismo-traveling ionospheric disturbances of ionograms observed during the 2011 Mw 9.0 Tohoku Earthquake[J]. Earth, Planets and Space, 2011, 63(7):897-902. Zhao B, Wang M, Yu T, et al. Is an unusual large enhancement of ionospheric electron density linked with the 2008 great Wenchuan earthquake?[J]. Journal of Geophysical Research Atmospheres, 2008, 113(A11):A11304. Pulinets S A. Seismic activity as a source of the ionospheric variability [J]. Advances in Space Research, 1998, 22(6):903-906.

Habitability constraints on water-rich exoplanets

NASA Astrophysics Data System (ADS)

Noack, Lena; Höning, Dennis; Rivoldini, Attilio; Heistracher, Clemens; Zimov, Nastasia; Journaux, Baptiste; Lammer, Helmut; Van Hoolst, Tim; Hendrik Bredehöft, Jan

2016-04-01

appear episodically at the water-mantle boundary (WMB). We also investigated the main paramters influencing the existence of volcanic activity and silicate crust formation. Under deep water layers, the high pressure from the overlying water layer can inhibit melting in the mantle. The main parameters influencing the maximal water layer depth, for which melting is still possible, are indeed the parameters influencing the mantle energy budget, which are the amount of radioactive heat sources and the initial upper mantle temperature. Plate tectonics also has a strong influence on the existence of volcanism. Crustal parameters (initial thickness or heat sources enrichment factor) as well as the ice rheology (i.e. the isolating effect of the ice shell on the mantle) have only a small influence on melting processes in the interior and the formation of crust. [1] L. Noack, A. Rivoldini and T. Van Hoolst 2015: CHIC - Coupling Habitability, Interior and Crust: A new Code for Modeling the Thermal Evolution of Planets and Moons. INFOCOMP 2015, ISSN 2308-3484, ISBN 978-1-61208-416-9, pp. 84-90, IARIA, 2015. [2] L. Noack, D. Höning, A. Rivoldini, C. Heistracher, N. Zimov, B. Journaux, H. Lammer, T. Van Hoolst and J.H. Bredehöft: Water-rich planets: how habitable is a water layer deeper than on Earth? Submitted to Icarus.

Hydrothermal processes above the Yellowstone magma chamber: Large hydrothermal systems and large hydrothermal explosions

USGS Publications Warehouse

Morgan, L.A.; Shanks, W.C. Pat; Pierce, K.L.

2009-01-01

Hydrothermal explosions are violent and dramatic events resulting in the rapid ejection of boiling water, steam, mud, and rock fragments from source craters that range from a few meters up to more than 2 km in diameter; associated breccia can be emplaced as much as 3 to 4 km from the largest craters. Hydrothermal explosions occur where shallow interconnected reservoirs of steam- and liquid-saturated fluids with temperatures at or near the boiling curve underlie thermal fields. Sudden reduction in confi ning pressure causes fluids to fl ash to steam, resulting in signifi cant expansion, rock fragmentation, and debris ejection. In Yellowstone, hydrothermal explosions are a potentially signifi cant hazard for visitors and facilities and can damage or even destroy thermal features. The breccia deposits and associated craters formed from hydrothermal explosions are mapped as mostly Holocene (the Mary Bay deposit is older) units throughout Yellowstone National Park (YNP) and are spatially related to within the 0.64-Ma Yellowstone caldera and along the active Norris-Mammoth tectonic corridor. In Yellowstone, at least 20 large (>100 m in diameter) hydrothermal explosion craters have been identifi ed; the scale of the individual associated events dwarfs similar features in geothermal areas elsewhere in the world. Large hydrothermal explosions in Yellowstone have occurred over the past 16 ka averaging ??1 every 700 yr; similar events are likely in the future. Our studies of large hydrothermal explosion events indicate: (1) none are directly associated with eruptive volcanic or shallow intrusive events; (2) several historical explosions have been triggered by seismic events; (3) lithic clasts and comingled matrix material that form hydrothermal explosion deposits are extensively altered, indicating that explosions occur in areas subjected to intense hydrothermal processes; (4) many lithic clasts contained in explosion breccia deposits preserve evidence of repeated fracturing

The impact of the use of different types of gloves and bare hands for preparation of clean surgical instruments.

PubMed

Bruna, Camila Quartim de Moraes; Souza, Rafael Queiroz de; Massaia, Irineu Francisco Silva; Cruz, Áurea Silveira; Graziano, Kazuko Uchikawa

2016-10-10

implica em aumento dos custos do processo e da geração de resíduos, além do potencial risco alergênico ao látex. determinar si existen diferencias en la seguridad de la preparación del instrumental quirúrgico relacionadas con el uso de diferentes tipos de guantes y de las manos desnudas y evaluar la carga microbiológica de estos preparados sin guantes. experimento de laboratorio con enfoque pragmático, en el que las muestras fueron manejadas con diferentes tipos de guantes y las manos desnudas. Además, un ensayo de citotoxicidad se llevó a cabo mediante el método de difusión en agar. Otras muestras fueron sometidas a análisis microbiológico después de haber sido manipuladas sin guantes. ninguna de las muestras presentó efecto citotóxico. Todos los cultivos microbiológicos mostraron crecimiento de microorganismos, pero ningún microorganismo ha sido recuperado después de la esterilización en autoclave. no hubo diferencias en las respuestas citotóxicas con respecto al uso de diferentes tipos de guantes y de las manos desnudas en el manejo del instrumental quirúrgico limpio, lo que podría conllevar riesgo de yatrogenia. Es de destacar que el uso de guantes implica un aumento de los costos del proceso y la generación de residuos, además del potencial riesgo alergénico al látex.

New Organic Stable Isotope Reference Materials for Distribution through the USGS and the IAEA

NASA Astrophysics Data System (ADS)

Schimmelmann, Arndt; Qi, Haiping

2014-05-01

the 10 laboratories. Successfully calibrated organic RMs could become available as early as 2015. - n-Hexadecane (C16 n-alkane), three H, C-isotopic varieties; - Glycine (amino acid), three H, C, N-isotopic varieties; - L-valine (amino acid), three H, C, N-isotopic varieties; - Methyl n-heptadecanoate (methyl ester of C17 n-alkanoic fatty acid); - Methyl icosanoate (methyl ester of C20 n-alkanoic fatty acid), three H, C-isotopic varieties; - Caffeine, three H, C, N-isotopic varieties; - Hydrocarbon vacuum pump oils, two H-isotopic varieties; - Polyethylene powder, and possibly a 2H and 13C-enriched polyethylene string. [1] Qi H., Coplen T.B., Geilmann H., Brand W.A., Böhlke J.K. (2003) Two new organic reference materials for δ13C and δ15N measurements and a new value for the δ13C of NBS 22 oil. Rapid Communications in Mass Spectrometry 17, 2483-2487. [2] Coplen T.B. (1996) New guidelines for reporting stable hydrogen, carbon, and oxygen isotope-ratio data. Geochimica et Cosmochimica Acta 60, 3359-3360. [3] Coplen T.B., Brand W.A., Gehre M., Gröning M., Meijer H.A.J., Toman B., Verkouteren R.M. (2006) New guidelines for δ13C measurements. Analytical Chemistry 78 (7), 2439-2441. [4] Werner R.A., Brand W.A. (2001) Referencing strategies and techniques in stable isotope ratio analysis. Rapid Communications in Mass Spectrometry 15, 501-519.

Feasibility of Gamified Mobile Service Aimed at Physical Activation in Young Men: Population-Based Randomized Controlled Study (MOPO).

PubMed

Leinonen, Anna-Maiju; Pyky, Riitta; Ahola, Riikka; Kangas, Maarit; Siirtola, Pekka; Luoto, Tim; Enwald, Heidi; Ikäheimo, Tiina M; Röning, Juha; Keinänen-Kiukaanniemi, Sirkka; Mäntysaari, Matti; Korpelainen, Raija; Jämsä, Timo

2017-10-10

fitness from baseline between the groups, whereas waist circumference was reduced in the most inactive men within the intervention group (P=.01). Among completers with valid physical activity data (n=167), there was a borderline difference in the change in mean daily time spent in moderate to vigorous physical activity between the groups (11.9 min vs -9.1 min, P=.055, linear mixed model). Within the intervention group (n=87), baseline vigorous physical activity was inversely associated with change in moderate to vigorous physical activity during the trial (R=-.382, P=.01). The various functionalities related to physical activity of the gamified tailored mobile service were considered important. However, the compliance was limited. Within the current setup, the mobile service had no effect on anthropometry or fitness, except reduced waist circumference in the most inactive men. Among completers with valid physical activity data, the trial had a borderline positive effect on moderate to vigorous physical activity. Further development is needed to improve the feasibility and adherence of an integrated multifunctional service. Clinicaltrials.gov NCT01376986; http://clinicaltrials.gov/ct2/show/NCT01376986 (Archived by WebCite at http://www.webcitation.org/6tjdmIroA). ©Anna-Maiju Leinonen, Riitta Pyky, Riikka Ahola, Maarit Kangas, Pekka Siirtola, Tim Luoto, Heidi Enwald, Tiina M Ikäheimo, Juha Röning, Sirkka Keinänen-Kiukaanniemi, Matti Mäntysaari, Raija Korpelainen, Timo Jämsä. Originally published in JMIR Mhealth and Uhealth (http://mhealth.jmir.org), 10.10.2017.

Gravito-electrodynamics, Ehd and Their Applications To Natural Hazards and Laboratory Devices

NASA Astrophysics Data System (ADS)

Kikuchi, H.

For the past two decades, theory of dusty and dirty plasmas in space and in the labo - ratory has been developed on the basis of both unconventional gravito-electrody- nam ics and a new EHD (electrohydrodynamics) with novel concepts of electric re- connection and critical ionization velocity as well as modern concepts of self-organ- ization and chaos and has been applied to explanations of a variety of new dust-re- lated and meteorologyico-electric phenomena such as planetary (Saturn's and Jupi- ter's) dust layer or ring formation, terrestrial dust layer formation, terrestrial light - ning including winter thunderstorms, rocket and tower triggered lightning, planetary (Saturn's, Jupiter's, and Io's) lightning, nebular lightning, ball lightning, tornadic thunderstorms, whirlwinds, cloud-to-ionosphere discharges, pre-earthquake atmo- sphereic and ionospheric effects, and new laboratory devices such as electric undu - lators, a universal electric-cusp type plasma reactor for basic laboratory studies, sim- ulations of atmospheric phenomena and pollution control and gas cleaning, plasma processing and new material production for industrial applications, and new devices such as towards cancer treatment for biological and medical applications. Reference H. Kikuchi, Electrohydrodynamics in Dusty and Dirty plasmas, Kluwer Academic Publishers, Dordrecht/The Netherlands, 2001. For describing any plasmas, particle dynamics plays always fundamental and impor - tant roles in understanding all of plasma behaviors. A variety of descriptions in a magnetic field such as a guiding center approach have well been developed as a test-particle approach particularly for a base of MHD. This is still true for EHD or EMHD, but additional factors become significant due to the existence of space charges and electric fields for EHD or EMHD in dielectric or semiconducting fluids. In cosmic plasmas, the existence of double layers, electric and magnetic dipoles or quadru-poles often affects the

Inner-ear decompression sickness: 'hubble-bubble' without brain trouble?

PubMed

Tremolizzo, Lucio; Malpieri, Massimo; Ferrarese, Carlo; Appollonio, Ildebrando

2015-06-01

Inner-ear decompression sickness (DCS) is an incompletely understood and increasingly recognized condition in compressed-air divers. Previous reports show a high association of inner-ear DCS with persistent foramen ovale (PFO), suggesting that a moderate-to-severe right-to-left shunt might represent a major predisposing factor, and more properly defining it as an event from arterial gas embolism (AGE). However, other conditions characterized by bubbles entering the arterial circulation, such as open-chamber cardiac surgery, do not produce inner-ear involvement, while sometimes damaging the brain extensively. Moreover, in other sites, such as the spinal cord, the prevailing mechanism for DCS is not AGE, but more likely local bubble formation with subsequent compression of venules and capillaries. Thus, AGE might be, more properly, a predisposing condition, neither sufficient, nor possibly even strictly necessary for inner-ear DCS. A 'two-hit hypothesis' has been proposed, implying a locally selective vulnerability of the inner ear to AGE. Modelled kinetics for gas removal are slower in the inner ear compared to the brain, leading to a supersaturated environment which allows bubbles to grow until they eventually obstruct the labyrinthine artery. Since this artery is relatively small, there is a low probability for a bubble to enter it; this might explain the disproportion between the high prevalence of PFO in the general population (25-30%) and the very low incidence of inner-ear DCS in compressed-air diving (approximately 0.005%). Furthermore, given that the labyrinthine artery usually originates either from the anterior inferior cerebellar artery, or directly from the basilar artery, shunting bubbles will more frequently swarm through the entire brain. In this case, however, the brain's much faster gas removal kinetics might allow for them to be reabsorbed without damaging brain tissue. In line with this scenario is the low probability (approx. 15%) of inner

Pions to Quarks

NASA Astrophysics Data System (ADS)

Brown, Laurie Mark; Dresden, Max; Hoddeson, Lillian

2009-01-01

Part I. Introduction; 1. Pions to quarks: particle physics in the 1950s Laurie M Brown, Max Dresden and Lillian Hoddeson; 2. Particle physics in the early 1950s Chen Ning Yang; 3. An historian's interest in particle physics J. L. Heilbron; Part II. Particle discoveries in cosmic rays; 4. Cosmic-ray cloud-chamber contributions to the discovery of the strange particles in the decade 1947-1957 George D. Rochester; 5. Cosmic-ray work with emulsions in the 1940s and 1950s Donald H. Perkins; Part III. High-energy nuclear physics; Learning about nucleon resonances with pion photoproduction Robert L. Walker; 7. A personal view of nucleon structure as revealed by electron scattering Robert Hofstadter; 8. Comments on electromagnetic form factors of the nucleon Robert G. Sachs and Kameshwar C. Wali; Part IV. The new laboratory; 9. The making of an accelerator physicist Matthew Sands; 10. Accelerator design and construction in the 1950s John P. Blewett; 11. Early history of the Cosmotron and AGS Ernest D. Courant; 12. Panel on accelerators and detectors in the 1950s Lawrence W. Jones, Luis W. Alvarez, Ugo Amaldi, Robert Hofstadter, Donald W. Kerst, Robert R. Wilson; 13. Accelerators and the Midwestern Universities Research Association in the 1950s Donald W. Kerst; 14. Bubbles, sparks and the postwar laboratory Peter Galison; 15. Development of the discharge (spark) chamber in Japan in the 1950s Shuji Fukui; 16. Early work at the Bevatron: a personal account Gerson Goldhaber; 17. The discovery of the antiproton Owen Chamberlain; 18. On the antiproton discovery Oreste Piccioni; Part V. The Strange Particles; 19. The hydrogen bubble chamber and the strange resonances Luis W. Alvarez; 20. A particular view of particle physics in the fifties Jack Steinberger; 21. Strange particles William Chinowsky; 22. Strange particles: production by Cosmotron beams as observed in diffusion cloud chambers William B. Fowler; 23. From the 1940s into the 1950s Abraham Pais; Part VI. Detection of the

Tanque Loma, a new late-Pleistocene megafaunal tar seep locality from southwest Ecuador

NASA Astrophysics Data System (ADS)

Lindsey, Emily L.; Lopez R., Eric X.

2015-01-01

, geologic context, and sedimentology of Tanque Loma suggest that this site represents a bone bed assemblage in a heavily vegetated, low-energy riparian environment with secondary infiltration of asphalt that helped to preserve the bones. The predominance of Eremotherium fossils at this site indicate that it may have been an area where these animals congregated, suggesting possible gregarious behavior in this taxon. The radiocarbon dates so far obtained on extinct taxa at Tanque Loma are consistent with a model positing earlier extinctions of megafauna in tropical South America than of related taxa further south on the continent, although this pattern may be an artifact of low sampling in the region. xml:lang="es" Aunque más de 1.000 huesos de megafauna han sido identificados en los estratos del Pleistoceno en Tanque Loma, más del 85% de esos mismos pertenecen a una sola especie, el perezoso gigante Eremotherium laurillardi. Sin embargo, otros cinco taxones de megafauna han sido recuperados de este sitio, los cuales son: Glossotherium cf. G. tropicorum, Holmesina occidentalis, cf. Notiomastodon platensis, Equus (Amerhippus) c.f. santaelenae y un cérvido identificado tentativamente en base a tamaño y geografía como cf. Odocoileus salinae. Ningún carnívoro ha sido identificado aún en Tanque Loma, y los restos de microvertebrados son muy raros en los estratos del Pleistoceno, aunque las conchas de caracol terrestre y los restos fragmentados de invertebrados marinos son encontrados ocasionalmente dentro de esas capas. Los fechados de radiocarbono por espectrómetro de acelerador de masas (AMS) en huesos de Eremotherium y cf. Notiomastodon de la capa de asfalto y por encima de esta resultaron en ˜17,000-23,500 años radiocarbónicos AP. En conjunto, la tafonomía, la composición taxonómica, el contexto geológico, y la sedimentolgía del sitio Tanque Loma surgieren que esta localidad representa un yacimiento depositado en un ambiente ribereño con bajo flujo y vegetaci

Factors associated with the risk of fall in adults in the postoperative period: a cross-sectional study.

PubMed

Mata, Luciana Regina Ferreira da; Azevedo, Cissa; Policarpo, Aryanne Gabrielle; Moraes, Juliano Teixeira

2017-06-08

to assess the factors associated with the risk of fall in patients undergoing surgical procedures. quantitative and cross-sectional study carried out with 257 adult patients in a hospital in the state of Minas Gerais, Brazil. Data were collected using the sociodemographic and clinical questionnaire, the Morse Fall Scale, and the Quality of Recovery Score. Data were submitted to descriptive statistical analysis and multinomial logistic regression. The level of significance was set at 0.05. 35.4% of patients had high risk of falls, 38.9% had moderate risk and 25.7% had low risk. The mean value in the surgical recovery scale was 175.37 points and no patient presented poor surgical recovery. Regarding the results of the bivariate analysis, it was found that age (p<0.001), SAH (p<0.001) and diabetes (p=0.017) were positively associated with high risk of fall, whereas cancer (p=0.004) was positively associated with moderate risk of fall. Surgical recovery (p=0,008) was inversely associated with high risk of fall. the results of this study allowed the identification of five factors associated with the risk of fall in adults in the postoperative hospital stay. These findings may support the planning of nursing actions aimed at preventing the risk of fall in the postoperative period. evaluar los factores asociados al riesgo de caída en pacientes sometidos a procedimientos quirúrgicos. estudio cuantitativo, transversal, realizado en 257 pacientes adultos en un hospital de Minas Gerais, Brasil. La recolección de datos se realizó por medio de un cuestionario sociodemográfico y clínico, Morse Fall Scale Quality of Recovery Score. Los datos fueron sometidos al análisis estadístico descriptivo y regresión logística multinomial. El nivel de significación adoptado fue de 0,05. 35,4% de los pacientes presentaron elevado riesgo de caídas, 38,9% moderado riesgo y 25,7% bajo riesgo. La escala de recuperación quirúrgica indicó valor promedio de 175,37 puntos y ning

EDITORIAL: 'Best article' prize for the 5th anniversary of Environmental Research Letters 'Best article' prize for the 5th anniversary of Environmental Research Letters

NASA Astrophysics Data System (ADS)

Kammen, Dan; Wright, Guillaume

2011-12-01

To celebrate the 5th anniversary of Environmental Research Letters (ERL) the publishers of the journal, IOP Publishing, have awarded a prize for the five best articles published in ERL since the journal began in 2006. The procedure for deciding the winning articles was as thorough as possible to ensure that the most outstanding articles would win the prize. A shortlist of 25 nominated research articles, five for each year since ERL was launched, which were chosen based on a range of criteria including novelty, scientific impact, readership, broad appeal and wider media coverage, was selected. The ERL Editorial Board then assessed and rated these 25 articles in order to choose a winning article for each year. We would like to announce that the following articles have been awarded ERL's 5th anniversary best article prize: 2006/7 The Bodélé depression: a single spot in the Sahara that provides most of the mineral dust to the Amazon forest Ilan Koren, Yoram J Kaufman, Richard Washington, Martin C Todd, Yinon Rudich, J Vanderlei Martins and Daniel Rosenfeld 2006 Environ. Res. Lett. 1 014005 2008 Causes and impacts of the 2005 Amazon drought Ning Zeng, Jin-Ho Yoon, Jose A Marengo, Ajit Subramaniam, Carlos A Nobre, Annarita Mariotti and J David Neelin 2008 Environ. Res. Lett. 3 014002 2009 How difficult is it to recover from dangerous levels of global warming? J A Lowe, C Huntingford, S C B Raper, C D Jones, S K Liddicoat and L K Gohar 2009 Environ. Res. Lett. 4 014012 2010 Is physical water scarcity a new phenomenon? Global assessment of water shortage over the last two millennia Matti Kummu, Philip J Ward, Hans de Moel and Olli Varis 2010 Environ. Res. Lett. 5 034006 2011 Implications of urban structure on carbon consumption in metropolitan areas Jukka Heinonen and Seppo Junnila 2011 Environ. Res. Lett. 6 014018 Our congratulations go to these authors. In recognition of their outstanding work, we are delighted to offer all of the authors of the winning articles free

A review of eating disorders research in Mexico.

PubMed

Unikel, Claudia; Bojorquez, Ietza

2007-02-01

indizadas y tesis de grado, mediante los descriptores "trastorno alimentario," anorexia nervosa," bulimia nervosa," "imagen corporal," "atracones," "restricción alimentaria," "preocupación por el peso y la figura," y "conducta de dieta." Éstos se combinaron con el operador Booleano "AND" con "México" y "América Latina." Se presentan los hallazgos para la epidemiología, la validez de los instrumentos de medición, comorbilidad, y factores de riesgo. Una encuesta nacional representativa encontró una prevalencia de 1.8% para la bulimia nervosa, y ningún caso de anorexia nervosa. No obstante, la carencia de estudios con una entrevista clínica confirmatoria y de otras muestras nacionales o regionales dificulta el arribo a conclusiones acerca de la prevalencia real. Varios instrumentos para la detección de los trastornos alimentarios y de la alimentación desordenada se han validado en población mexicana. La comorbilidad de los trastornos alimentarios en México incluye el uso y abuso de alcohol, la obesidad y el trastorno de personalidad limítrofe. Los factores de riesgo referidos incluyen el peso corporal y la presión cultural para estar delgado. Las líneas de investigación futuras deberán incluir estudios epidemiológicos con muestras representativas y la confirmación del diagnóstico, estudios longitudinales, y la exploración de factores de riesgo y protectores específicos a esta población. L'objectif de cet article est de résumer les résultats de recherche et l'état actuel des connaissances sur les troubles alimentaires au Mexique. Les articles publiés dans des revues indexées et les thèses de doctorat ont été recensés en utilisant les mots-clés « eating disorders », « anorexia nervosa », « bulimia nervosa », « body image », « binge eating », « restrained eating », « weight and shape concern » et « dieting ». Ceux-ci furent combinés, en utilisant la conjonction « AND », avec les termes « Mexico » et « Latin America ». Les

Assortative mating and directional or stabilizing selection for a non-linear function of traits in Tribolium.

PubMed

Campo, J L; Gil, M G

1993-01-12

significativa para el valor agregado y sus dos caracteres componentes. Había una ventaja consistente aunque no significativa para el apareamiento clasificado, siendo la respuesta media para valor agregado y longitud de pupa 1.15 veces mayor en la línea A. En el experimento 2, el criterio de selección era el cuadrado de la desviación con respecto a la media de longitud de pupa (selección estabilizante); ambas líneas no mostraron ningún cambio significativo en longitud de pupa. La varianza fenotípica tuvo una disminución significativa debida a una reducción de la varianza genética, siendo estos cambios similares en ambas líneas. ZUSAMMENFASSUNG: Assortative Paarung, gerichtete oder stabilisierende Selektion für nicht-lineare Funktion von Merkmalen in Triboleum Assortative oder Zufallspaarung nach gerichteter Selektion in beiden Richtungen für nicht-lineare Merkmale (Versuch 1) oder stabilisierende für Puppenlänge (Versuch 2) wurden über 5 Generationen bei Triboleum castaneum (A bzw. R), mit je 3 Wiederholungen und 25% Remonte, durchgeführt. In Versuch 1 sollten adultes Gewicht und 1. und 2. Potenz der Puppenlänge gesteigert werden. A und R Linien ergaben signifikante Selektionserfolge für Gesamtwert (184 ± 6 bezw. 161 ± 14), Puppenlänge (0,74 ± 02, 0.64 ± 05) und adultes Gewicht (0.74 ± 03 und 0.78 ± 0.12). Obwohl Linie A nicht statistisch signifikant überlegen war, zeigte sich durchgehend überlegenheit gegenüber R Linien, im Durchschnitt 1,15 mal. In Versuch 2 zeigte keine der beiden Linien Veränderungen der Puppenlänge, aber die Varianz nahm signifikant ab wegen Verminderung der Varianz zwischen Familien, deren Abnahme in der zufalls- und in der assortativ gepaarten Linie gleich groß war. RÉSUMÉ: Accouplement classé et sélection directionelle o stabilisant pour une fonction no lineal chez Tribolium Deux lingnées de Tribolium castaneum on été soumis a sélection directionelle par un index no lineal (Expérience 1) o stabilisant pour la

EDITORIAL: Focus on Quantum Correlations in Tailored Matter

NASA Astrophysics Data System (ADS)

Muramatsu, Alejandro; Pfau, Tilman

2008-04-01

different experimental realizations leading to the two routes mentioned above, they share a common goal, namely achieving a deep understanding of quantum correlations that will ultimately allow to control them and possibly realize new forms of matter. They also share the flexibility that allows to increase the complexity in quantum correlations by joining in a controlled manner well understood building units and/or by regulating their coupling to the environment. It is under the common goal of understanding and controlling quantum correlations that we see the topics presented in this focus issue of New Journal of Physics, where both lines of development, that is on solid-state substrates or with quantum gases, give a timely view of the advances towards the above mentioned common goal. Focus on Quantum Correlations in Tailored Matter Contents Temperature changes when adiabatically ramping up an optical lattice Lode Pollet, Corinna Kollath, Kris Van Houcke and Matthias Troyer Numerical study of two-body correlation in a 1D lattice with perfect blockade B Sun and F Robicheaux Kinetic Monte Carlo modeling of dipole blockade in Rydberg excitation experiment Amodsen Chotia, Matthieu Viteau, Thibault Vogt, Daniel Comparat and Pierre Pillet Motion of Rydberg atoms induced by resonant dipole-dipole interactions C Ates, A Eisfeld and J M Rost Quantum coherence due to Bose-Einstein condensation of parametrically driven magnons S O Demokritov, V E Demidov, O Dzyapko, G A Melkov and A N Slavin Chaotic dynamics in spinor Bose-Einstein condensates J Kronjäger, K Sengstock and K Bongs Damped Bloch oscillations of Bose-Einstein condensates in disordered potential gradients S Drenkelforth, G Kleine Büning, J Will, T Schulte, N Murray, W Ertmer, L Santos and J J Arlt Rabi oscillations between ground and Rydberg states and van der Waals blockade in a mesoscopic frozen Rydberg gas M Reetz-Lamour, J Deiglmayr, T Amthor and M Weidemüller Excitations in two-component Bose gases A Kleine, C

EDITORIAL: Special Issue on advanced and emerging light sources Special Issue on advanced and emerging light sources

NASA Astrophysics Data System (ADS)

Haverlag, Marco; Kroesen, Gerrit; Ferguson, Ian

2011-06-01

' discharge light sources and (O)LED sources, and new concepts are still being added to the range of technologies that are being used in practice. A truly classic aspect of lamp operation is lumen maintenance, and despite being in use for almost 50 years, Na/Sc quartz metal halide lamps until recently still suffered from a strong lumen depreciation over life. This issue has been resolved to a large extent with the introduction of high-frequency operation. In the paper of Van Erk et al, indications are given as to why this mode of operation is so successful. Another classic theme in the area of discharge lamp sources is ignition, still a major issue. In two consecutive papers by Sobota et al, several aspects of the cold ignition of ceramic metal halide lamps are discussed, including statistical delay effects, the role of the driving voltage, and ignition aids. The ignition becomes more complex when mercury is left out of a metal halide lamp and this is clearly shown in the paper by Estupiñán et al. When not buffered by mercury, water impurities will give rise to the formation of hydrogen iodide, which is very volatile and a strongly electronegative species, thereby hampering the ignition process. Mercury-free metal halide lamps will potentially show very different spectral properties. This is shown in the paper by Käning et al, where use has been made of the ongoing improvements in ceramic lamp technology to make lamps with a high rare-earth iodide content. It was found that in such lamps the contribution of molecular lines can become so important that some lines even become self-reversed. This opens new possibilities for making high-quality white light sources without mercury while retaining the use of electrodes. High rare-earth content also changes the behaviour of electrodes as a result of the lowering of the work function due to gas-phase emitter effects. In the paper by Reinelt et al some clear examples of this effect are investigated as well as their dependence on

A pilot study of the efficacy of wipes containing chlorhexidine 0.3%, climbazole 0.5% and Tris-EDTA to reduce Malassezia pachydermatis populations on canine skin

PubMed Central

Cavana, Paola; Peano, Andrea; Petit, Jean-Yanique; Tizzani, Paolo; Perrot, Sébastien; Bensignor, Emmanuel; Guillot, Jacques

2015-01-01

-EDTA contre Malassezia pachydermatis. Sujets Cinq colonies de shar-pei de recherche. Méthodes Les lingettes ont été appliquées une fois par jour au niveau du pli axillaire gauche, le pli inguinal droit et de la zone périanale(protocole A) et deux fois par joursur le pli axillaire droit, le inguinal droit et l'ombilic (protocole B) pendant 3 jours. L'activité in vivo a été évaluée par quantification des colonies de Malassezia par disques de contact sur les zones corporelles choisies avant et après application des lingettes. L'activité de la solution d'imprégnation des lingettes a été testée in vitro par tests de contact suivant les recommandations de l'European Standard UNI EN 1275. Résultats Les échantillons prélevés après application ont montré une diminution importante et rapide des CFU des levures Malassezia. Aucune différence significative dans la diminution des Malassezia n'a été mise en évidence entre les protocoles A et B. Des tests in vitro ont montré 100% d'activité contre les Malassezia après un temps de contact de 15 minutes avec la solution des lingettes. Conclusions et importance Clinique Les lingettes contenant la chlorhexidine, le climbazole et le Tris-EDTA réduisent substantiellement la population de M. pachydermatis sur la peau des chiens. Les résultats, bien qu'il s'agisse d'une étude non contrôlée réalisée sur un faible nombre de chiens, suggère que ces lingettes peuvent être utiles en traitement local de la dermatite à Malassezia des lèvres, des pattes, du périnée et des plis cutanés. Resumen Introducción las gasas que contienen clorhexidina y derivados de azol son recomendadas para uso veterinario. No se ha publicado ningún estudio acerca su actividad contra Malassezia paquidermatis. Hipótesis/Objetivos evaluar la actividad in vivo e in vitro de las gasas con clorhexidina, climbazol y soluciónb Tris-EDTA frente a Malassezia pachydermatis Animales cinco colonias de investigación de perros Sharpei. M�

Advanced Materials and Processing 2010

NASA Astrophysics Data System (ADS)

Zhang, Yunfeng; Su, Chun Wei; Xia, Hui; Xiao, Pengfei

2011-06-01

Strain sensors made from MWNT/polymer nanocomposites / Gang Yin, Ning Hu and Yuan Li -- Shear band evolution and nanostructure formation in titanium by cold rolling / Dengke Yang, Peter D. Hodgson and Cuie Wen -- Biodegradable Mg-Zr-Ca alloys for bone implant materials / Yuncang Li ... [et al.] -- Hydroxyapatite synthesized from nanosized calcium carbonate via hydrothermal method / Yu-Shiang Wu, Wen-Ku Chang and Min Jou -- Modeling of the magnetization process and orthogonal fluxgate sensitivity of ferromagnetic micro-wire arrays / Fan Jie ... [et al.] -- Fabrication of silicon oxide nanowires on Ni coated silicon substrate by simple heating process / Bo Peng and Kwon-Koo Cho -- Deposition of TiOxNy thin films with various nitrogen flow rate: growth behavior and structural properties / S.-J. Cho ... [et al.] -- Observation on photoluminescence evolution in 300 KeV self-ion implanted and annealed silicon / Yu Yang ... [et al.] -- Facile synthesis of lithium niobate from a novel precursor H[symbol] / Meinan Liu ... [et al.] -- Effects of the buffer layers on the adhesion and antimicrobial properties of the amorphous ZrAlNiCuSi films / Pai-Tsung Chiang ... [et al.] -- Fabrication of ZnO nanorods by electrochemical deposition process and its photovoltaic properties / Jin-Hwa Kim ... [et al.] -- Cryogenic resistivities of NbTiAlVTaLax, CoCrFeNiCu and CoCrFeNiAl high entropy alloys / Xiao Yang and Yong Zhang -- Modeling of centrifugal force field and the effect on filling and solidification in centrifugal casting / Wenbin Sheng, Chunxue Ma and Wanli Gu -- Electrochemical properties of TiO[symbol] nanotube arrays film prepared by anodic oxidation / Young-Jin Choi ... [et al.] -- Effect of Ce additions on high temperature properties of Mg-5Sn-3Al-1Zn alloy / Byoung Soo Kang ... [et al.] -- Sono-electroless plating of Ni-Mo-P film / Atsushi Chiba, Masato Kanou and Wen-Chang Wu -- Diameter dependence of giant magneto-impedance effect in co-based melt extracted amorphous

Poster Session B

PubMed Central

2014-01-01

proteins which are fundamental regulators of PPARg and the fat cell commitment decision. B.6 Application of Quantitative and Functional Phosphoproteomics In Study of Ethylene Signaling Ning Li 1 1The Hong Kong University of Science and Technology, Hong Kong, China Ethylene is a major plant hormone that regulates a diverse aspect of plant growth and development. The regulatory roles of ethylene in plants include promotion of leaf and flower petal senescence, yellowing and abscission, as well as promotion of fruit abscission and ripening. This key hormone is also involved in regulation of a number of plant biotic and abiotic stress responses. A dramatic effect of ethylene on tropic response is the dual-and-opposing effect of ethylene on stem negative gravitropic response, in which short-term ethylene treatment (0.5 hour) appears to inhibit stem bending up following re-orientation of inflorescence of Arabidopsis. In contrast, a long-term treatment (12 hours) stimulates gravitropic response and promote stem curve up faster. This time-dependent and dose- independent dual-and-opposing effect of ethylene on stem gravitropism may involve multiple signaling pathways. Stable isotope metabolic labeling-based quantitative phosphoproteomics performed on ein2–5, ctr1–1 and rcn1–1 ethylene signaling mutants indeed confirmed the time-dependent protein phosphorylation changes and some of phosphorylation events are independent to ein2 loss-of- function gene in response to ethylene treatment. Functional studies on the phosphorylated transcription factor ERF110 isoform suggest that it is required for the control of flowering time via multiple ethylene signaling pathways. B.7 Intact N- and O-linked Glycopeptide Identification from HCD Data Using Byonic Katalin F. Medzihradszky1, Jason Maynard1, Krista Kaasik1, Marshall Bern2 1University of California, San Francisco, CA, USA; 2Protein Metrics, San Carlos, CA, USA The importance of high quality analysis of glycosylated proteins is steadily