Karyotype and identification of sex in two endangered crane species

USGS Publications Warehouse

Goodpasture, C.; Seluja, G.; Gee, G.; Wood, Don A.

1992-01-01

A laboratory procedure for sex identification of monomorphic birds was developed using modern cytological methods of detecting chromosome abnormalities in human amniotic fluid samples. A pin feather is taken from a pre-fledging bird for tissue culture and karyotype analysis. Through this method, the sex was identified and the karyotype described of the whooping crane (Grus americana) and the Mississippi sandhill crane (G. canadensis pulla). Giemsa-stained karyotypes of these species showed an identical chromosome constitution with 2n = 78 + 2. However, differences in the amount of centromeric heterochromatin were observed in the Mississippi sandhill crane when compared to the whooping crane C-banded karyotype.

Molecular phylogeny and karyotype differentiation in Paratelmatobius and Scythrophrys (Anura, Leptodactylidae).

PubMed

Lourenço, L B; Bacci-Júnior, M; Martins, V G; Recco-Pimentel, S M; Haddad, C F B

2008-03-01

Paratelmatobius and Scythrophrys are leptodactylid frogs endemic to the Brazilian Atlantic forest and their close phylogenetic relationship was recently inferred in an analysis that included Paratelmatobius sp. and S. sawayae. To investigate the interspecific relationships among Paratelmatobius and Scythrophrys species, we analyzed a mitochondrial region (approximately 2.4 kb) that included the ribosomal genes 12S and 16S and the tRNAval in representatives of all known localities of these genera and in 54 other species. Maximum parsimony inferences were done using PAUP* and support for the clades was evaluated by bootstrapping. A cytogenetic analysis using Giemsa staining, C-banding and silver staining was also done for those populations of Paratelmatobius not included in previous cytogenetic studies of this genus in order to assess their karyotype differentiation. Our results suggested Paratelmatobius and Scythrophrys formed a clade strongly supported by bootstrapping, which corroborated their very close phylogenetic relationship. Among the Paratelmatobius species, two clades were identified and corroborated the groups P. mantiqueira and P. cardosoi previously proposed based on morphological characters. The karyotypes of Paratelmatobius sp. 2 and Paratelmatobius sp. 3 described here had diploid chromosome number 2n = 24 and showed many similarities with karyotypes of other Paratelmatobius representatives. The cytogenetic data and the phylogenetic analysis allowed the proposal/corroboration of several hypotheses for the karyotype differentiation within Paratelmatobius and Scythrophrys. Namely the telocentric pair No. 4 represented a synapomorphy of P. cardosoi and Paratelmatobius sp. 2, while chromosome pair No. 5 with interstitial C-bands could be interpreted as a synapomorphy of the P. cardosoi group. The NOR-bearing chromosome No. 10 in the karyotype of P. poecilogaster was considered homeologous to chromosome No. 10 in the karyotype of Scythrophrys sp

Application of bacterial artificial chromosome array-based comparative genomic hybridization and spectral karyotyping to the analysis of glioblastoma multiforme.

PubMed

Cowell, John K; Matsui, Sei-Ichi; Wang, Yong D; LaDuca, Jeffrey; Conroy, Jeffrey; McQuaid, Devin; Nowak, Norma J

2004-05-01

Identification of genetic losses and gains is valuable in analysis of brain tumors. Locus-by-locus analyses have revealed correlations between prognosis and response to chemotherapy and loss or gain of specific genes and loci. These approaches are labor intensive and do not provide a global view of the genetic changes within the tumor cells. Bacterial artificial chromosome (BAC) arrays, which cover the genome with an average resolution of less than 1 MbP, allow defining the sum total of these genetic changes in a single comparative genomic hybridization (CGH) experiment. These changes are directly overlaid on the human genome sequence, thus providing the extent of the amplification or deletion, reflected by a megabase position, and gene content of the abnormal region. Although this array-based CGH approach (CGHa) seems to detect the extent of the genetic changes in tumors reliably, it has not been robustly tested. We compared genetic changes in four newly derived, early-passage glioma cell lines, using spectral karyotyping (SKY) and CGHa. Chromosome changes seen in cell lines under SKY analysis were also detected with CGHa. In addition, CGHa detected cryptic genetic gains and losses and resolved the nature of subtle marker chromosomes that could not be resolved with SKY, thus providing distinct advantages over previous technologies. There was remarkable general concordance between the CGHa results comparing the cell lines to the original tumor, except that the magnitude of the changes seen in the tumor sample was generally suppressed compared with the cell lines, a consequence of normal cells contaminating the tumor sample. CGHa revealed changes in cell lines that were not present in the original tumors and vice versa, even when analyzed at the earliest passage possible, which highlights the adaptation of the cells to in vitro culture. CGHa proved to be highly accurate and efficient for identifying genetic changes in tumor cells. This approach can accurately

Karyotype description and comparative analysis in Ringed Kingfisher and Green Kingfisher (Coraciiformes, Alcedinidae)

PubMed Central

Degrandi, Tiago Marafiga; de Oliveira, Jean Carlo Pedroso; Soares, Amanda de Araújo; Ledesma, Mario Angel; Hass, Iris; Garnero, Analía del Valle; Gunski, Ricardo José

2018-01-01

Abstract Kingfishers comprise about 115 species of the family Alcedinidae, and are an interesting group for cytogenetic studies, for they are among birds with most heterogeneous karyotypes. However, cytogenetics knowledge in Kingfishers is extremely limited. Thus, the aim of this study was to describe the karyotype structure of the Ringed Kingfisher (Megaceryle torquata Linnaeus, 1766) and Green Kingfisher (Chloroceryle americana Gmelin, 1788) and also compare them with related species in order to identify chromosomal rearrangements. The Ringed Kingfisher presented 2n = 84 and the Green Kingfisher had 2n = 94. The increase of the chromosome number in the Green Kingfisher possibly originated by centric fissions in macrochromosomes. In addition, karyotype comparisons in Alcedinidae show a heterogeneity in the size and morphology of macrochromosomes, and chromosome numbers ranging from 2n = 76 to 132. Thus, it is possible chromosomal fissions in macrochromosomes resulted in the increase of the diploid number, whereas chromosome fusions have originated the karyotypes with low diploid number. PMID:29780444

Design Analysis of Corridors-in-the-Sky

NASA Technical Reports Server (NTRS)

Xue, Min

2008-01-01

Corridors-in-the-sky or tubes is one of new concepts in dynamic airspace configuration. It accommodates high density traffic, which has similar trajectories. Less air traffic controllers workload is expected than classic airspaces, thus, corridors-in-the-sky may increase national airspace capacity and reduce flight delays. To design corridors-in-the-sky, besides identifying their locations, their utilization, altitudes, and impacts on remaining system need to be analyzed. This paper chooses one tube candidate and presents analyses of spatial and temporal utilization of the tube, the impact on the remaining traffic, and the potential benefit caused by off-loading the traffic from underlying sectors. Fundamental issues regarding to the benefits have been also clarified. Methods developed to assist the analysis are described. Analysis results suggest dynamic tubes in terms of varied utilizations during different time periods. And it is found that combined lane options would be a good choice to lower the impact on non-tube users. Finally, it shows significant reduction of peak aircraft count in underlying sectors with only one tube enabled.

Molecular karyotyping of the 2La inversion in Anopheles gambiae.

PubMed

White, Bradley J; Santolamazza, Federica; Kamau, Luna; Pombi, Marco; Grushko, Olga; Mouline, Karine; Brengues, Cecile; Guelbeogo, Wamdaogo; Coulibaly, Mamadou; Kayondo, Jonathan K; Sharakhov, Igor; Simard, Frederic; Petrarca, Vincenzo; Della Torre, Alessandra; Besansky, Nora J

2007-02-01

The African malaria vector Anopheles gambiae is polymorphic for alternative arrangements on the left arm of chromosome 2 (2La and 2L+(a)) that are non-randomly distributed with respect to degree of aridity. Detailed studies on the ecological role of inversion 2La have been hindered by the technical demands of traditional karyotype analysis and by sex- and stage-specific limitations on the availability of polytene chromosomes favorable for analysis. Recent molecular characterization of both inversion breakpoints presented the opportunity to develop a polymerase chain reaction (PCR)-based method for karyotype analysis. Here we report the development of this molecular diagnostic assay and the results of extensive field validation. When tested on 765 An. gambiae specimens sampled across Africa, the molecular approach compared favorably with traditional cytologic methods, correctly scoring > 94% of these specimens. By providing ready access to the 2La karyotype, this tool lays groundwork for future studies of the ecological genomics of this medically important species.

Detecting Mechanisms of Karyotype Evolution in Heterotaxis (Orchidaceae)

PubMed Central

Olmos Simões, André; Ojeda Alayon, Dario Isidro; de Barros, Fábio; Forni-Martins, Eliana Regina

2016-01-01

The karyotype is shaped by different chromosome rearrangements during species evolution. However, determining which rearrangements are responsible for karyotype changes is a challenging task and the combination of a robust phylogeny with refined karyotype characterization, GS measurements and bioinformatic modelling is necessary. Here, this approach was applied in Heterotaxis to determine what chromosome rearrangements were responsible for the dysploidy variation. We used two datasets (nrDNA and cpDNA, both under MP and BI) to infer the phylogenetic relationships among Heterotaxis species and the closely related genera Nitidobulbon and Ornithidium. Such phylogenies were used as framework to infer how karyotype evolution occurred using statistical methods. The nrDNA recovered Ornithidium, Nitidobulbon and Heterotaxis as monophyletic under both MP and BI; while cpDNA could not completely separate the three genera under both methods. Based on the GS, we recovered two groups within Heterotaxis: (1) "small GS", corresponding to the Sessilis grade, composed of plants with smaller genomes and smaller morphological structure, and (2) "large GS", corresponding to the Discolor clade, composed of plants with large genomes and robust morphological structures. The robust karyotype modeling, using both nrDNA phylogenies, allowed us to infer that the ancestral Heterotaxis karyotype presented 2n = 40, probably with a proximal 45S rDNA on a metacentric chromosome pair. The chromosome number variation was caused by ascending dysploidy (chromosome fission involving the proximal 45S rDNA site resulting in two acrocentric chromosome pairs holding a terminal 45S rDNA), with subsequent descending dysploidy (fusion) in two species, H. maleolens and H. sessilis. However, besides dysploidy, our analysis detected another important chromosome rearrangement in the Orchidaceae: chromosome inversion, that promoted 5S rDNA site duplication and relocation. PMID:27832130

Karyotype analysis of anuran trypanosomes by pulsed-field gradient gel electrophoresis.

PubMed

Lun, Z R; Desser, S S

1995-12-01

The chromosomes of 12 species and isolates of anuran trypanosomes were investigated by pulsed-field gradient gel electrophoresis. Twelve to 16 chromosomes ranging from 0.45 to 2.2 megabase pairs were found in each of these trypanosomes. Minichromosomes were not observed in any of the examined isolates. Results indicate that different species of anuran trypanosomes display distinct karyotype patterns, and that isolates from the same region are similar. Our findings also reveal that most chromosome profiles of these trypanosomes are in accordance with isoenzyme and random amplified polymorphic DNA analysis data.

Karyotype analysis and sex determination in Australian Brush-turkeys (Alectura lathami).

PubMed

Ortega, Madison T; Foote, Dustin J; Nees, Nicholas; Erdmann, Jason C; Bangs, Charles D; Rosenfeld, Cheryl S

2017-01-01

Sexual differentiation across taxa may be due to genetic sex determination (GSD) and/or temperature sex determination (TSD). In many mammals, males are heterogametic (XY); whereas females are homogametic (XX). In most birds, the opposite is the case with females being heterogametic (ZW) and males the homogametic sex (ZZ). Many reptile species lack sex chromosomes, and instead, sexual differentiation is influenced by temperature with specific temperatures promoting males or females varying across species possessing this form of sexual differentiation, although TSD has recently been shown to override GSD in Australian central beaded dragons (Pogona vitticeps). There has been speculation that Australian Brush-turkeys (Alectura lathami) exhibit TSD alone and/or in combination with GSD. Thus, we sought to determine if this species possesses sex chromosomes. Blood was collected from one sexually mature female and two sexually mature males residing at Sylvan Heights Bird Park (SHBP) and shipped for karyotype analysis. Karyotype analysis revealed that contrary to speculation, Australian Brush-turkeys possess the classic avian ZW/ZZ sex chromosomes. It remains a possibility that a biased primary sex ratio of Australian Brush-turkeys might be influenced by maternal condition prior to ovulation that result in her laying predominantly Z- or W-bearing eggs and/or sex-biased mortality due to higher sensitivity of one sex in environmental conditions. A better understanding of how maternal and extrinsic factors might differentially modulate ovulation of Z- or W-bearing eggs and hatching of developing chicks possessing ZW or ZZ sex chromosomes could be essential in conservation strategies used to save endangered members of Megapodiidae.

Karyotype analysis and sex determination in Australian Brush-turkeys (Alectura lathami)

PubMed Central

Ortega, Madison T.; Foote, Dustin J.; Nees, Nicholas; Erdmann, Jason C.; Bangs, Charles D.

2017-01-01

Sexual differentiation across taxa may be due to genetic sex determination (GSD) and/or temperature sex determination (TSD). In many mammals, males are heterogametic (XY); whereas females are homogametic (XX). In most birds, the opposite is the case with females being heterogametic (ZW) and males the homogametic sex (ZZ). Many reptile species lack sex chromosomes, and instead, sexual differentiation is influenced by temperature with specific temperatures promoting males or females varying across species possessing this form of sexual differentiation, although TSD has recently been shown to override GSD in Australian central beaded dragons (Pogona vitticeps). There has been speculation that Australian Brush-turkeys (Alectura lathami) exhibit TSD alone and/or in combination with GSD. Thus, we sought to determine if this species possesses sex chromosomes. Blood was collected from one sexually mature female and two sexually mature males residing at Sylvan Heights Bird Park (SHBP) and shipped for karyotype analysis. Karyotype analysis revealed that contrary to speculation, Australian Brush-turkeys possess the classic avian ZW/ZZ sex chromosomes. It remains a possibility that a biased primary sex ratio of Australian Brush-turkeys might be influenced by maternal condition prior to ovulation that result in her laying predominantly Z- or W-bearing eggs and/or sex-biased mortality due to higher sensitivity of one sex in environmental conditions. A better understanding of how maternal and extrinsic factors might differentially modulate ovulation of Z- or W-bearing eggs and hatching of developing chicks possessing ZW or ZZ sex chromosomes could be essential in conservation strategies used to save endangered members of Megapodiidae. PMID:28910392

Routine conventional karyotyping of lymphoma staging bone marrow samples does not contribute clinically relevant information.

PubMed

Nardi, Valentina; Pulluqi, Olja; Abramson, Jeremy S; Dal Cin, Paola; Hasserjian, Robert P

2015-06-01

Bone marrow (BM) evaluation is an important part of lymphoma staging, which guides patient management. Although positive staging marrow is defined as morphologically identifiable disease, such samples often also include flow cytometric analysis and conventional karyotyping. Cytogenetic analysis is a labor-intensive and costly procedure and its utility in this setting is uncertain. We retrospectively reviewed pathological reports of 526 staging marrow specimens in which conventional karyotyping had been performed. All samples originated from a single institution from patients with previously untreated Hodgkin and non-Hodgkin lymphomas presenting in an extramedullary site. Cytogenetic analysis revealed clonal abnormalities in only eight marrow samples (1.5%), all of which were positive for lymphoma by morphologic evaluation. Flow cytometry showed a small clonal lymphoid population in three of the 443 morphologically negative marrow samples (0.7%). Conventional karyotyping is rarely positive in lymphoma staging marrow samples and, in our cohort, the BM karyotype did not contribute clinically relevant information in the vast majority of cases. Our findings suggest that karyotyping should not be performed routinely on BM samples taken to stage previously diagnosed extramedullary lymphomas unless there is pathological evidence of BM involvement by lymphoma. © 2015 Wiley Periodicals, Inc.

Traditional karyotyping vs copy number variation sequencing for detection of chromosomal abnormalities associated with spontaneous miscarriage.

PubMed

Liu, S; Song, L; Cram, D S; Xiong, L; Wang, K; Wu, R; Liu, J; Deng, K; Jia, B; Zhong, M; Yang, F

2015-10-01

To compare the performance of traditional G-banding karyotyping with that of copy number variation sequencing (CNV-Seq) for detection of chromosomal abnormalities associated with miscarriage. Products of conception (POC) were collected from spontaneous miscarriages. Chromosomal abnormalities were detected using high-resolution G-banding karyotyping and CNV sequencing. Quantitative fluorescent polymerase chain reaction analysis of maternal and POC DNA for short tandem repeat (STR) markers was used to both monitor maternal cell contamination and confirm the chromosomal status and sex of the miscarriage tissue. A total of 64 samples of POC, comprising 16 with an abnormal and 48 with a normal karyotype, were selected and coded for analysis by CNV-Seq. CNV-Seq results were concordant for 14 (87.5%) of the 16 gross chromosomal abnormalities identified by karyotyping, including 11 autosomal trisomies and three sex chromosomal aneuploidies (45,X). Of the two discordant results, a 69,XXX polyploidy was missed by CNV-Seq, although supporting STR marker analysis confirmed the triploidy. In contrast, CNV-Seq identified a sample with 45,X karyotype as a 45,X/46,XY mosaic. In the remaining 48 samples of POC with a normal karyotype, CNV-Seq detected a 2.58-Mb 22q deletion associated with DiGeorge syndrome and nine different smaller CNVs of no apparent clinical significance. CNV-Seq used in parallel with STR profiling is a reliable and accurate alternative to karyotyping for identifying chromosome copy number abnormalities associated with spontaneous miscarriage. Copyright © 2015 ISUOG. Published by John Wiley & Sons Ltd.

Karyotype analysis in octoploid and decaploid wild strawberries, Fragaria (Rosaceae)

USDA-ARS?s Scientific Manuscript database

The 20 wild species of strawberries in the genus Fragaria (Rosaceae), have a euploid series including diploid (2n = 2x = 14) through decaploid (2n = 10x = 70) members. Karyotyping has not been thoroughly examined. The objective of this research was to determine the chromosomal morphology and karyoty...

The karyotype of Adenomera diptyx (Boettger 1885) (Anura, Leptodactylidae) from northeastern Argentina

PubMed Central

Zaracho, Víctor Hugo; Hernando, Alejandra Beatriz

2011-01-01

In this work we analyzed the karyotype of five populations of Adenomera diptyx from Argentina after conventional staining, Ag-NOR and C-banding. All specimens presented 2n = 26 and FN = 34. The karyotype was formed by three submetacentric, one metacentric and nine telocentric pairs. Silver staining revealed that the NOR was located on a secondary constriction in pair 7. C- banding evidenced constitutive heterochromatin at the pericentromeric region of all chromosomes. The karyotype of A. diptyx was similar to that of A. hylaedactyla (2n = 26, FN = 34) and different from that of A. andreae (2n = 26, FN = 40) in the fundamental number and secondary constriction position. It also differed from the karyotypes of A. marmorata (2n = 24, FN = 34 and 36) and of A. aff. bokermanni (2n = 23, FN = 34) in diploid number. Until a comprehensive cytogenetic analysis of all the species of the genus is performed, their chromosome evolution will remain poorly understood. PMID:21637549

The karyotype of Adenomera diptyx (Boettger 1885) (Anura, Leptodactylidae) from northeastern Argentina.

PubMed

Zaracho, Víctor Hugo; Hernando, Alejandra Beatriz

2011-01-01

In this work we analyzed the karyotype of five populations of Adenomera diptyx from Argentina after conventional staining, Ag-NOR and C-banding. All specimens presented 2n = 26 and FN = 34. The karyotype was formed by three submetacentric, one metacentric and nine telocentric pairs. Silver staining revealed that the NOR was located on a secondary constriction in pair 7. C- banding evidenced constitutive heterochromatin at the pericentromeric region of all chromosomes. The karyotype of A. diptyx was similar to that of A. hylaedactyla (2n = 26, FN = 34) and different from that of A. andreae (2n = 26, FN = 40) in the fundamental number and secondary constriction position. It also differed from the karyotypes of A. marmorata (2n = 24, FN = 34 and 36) and of A. aff. bokermanni (2n = 23, FN = 34) in diploid number. Until a comprehensive cytogenetic analysis of all the species of the genus is performed, their chromosome evolution will remain poorly understood.

Flow karyotyping and sorting of human chromosomes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gray, J.W.; Lucas, J.; Peters, D.

1986-07-16

Flow cytometry and sorting are becoming increasingly useful as tools for chromosome classfication and for the detection of numerical and structural chromosome aberrations. Chromosomes of a single type can be purified with these tools to facilitate gene mapping or production of chromosome specific recombinant DNA libraries. For analysis of chromosomes with flow cytometry, the chromosomes are extracted from mitotic cells, stained with one or more fluorescent dyes and classified one-by-one according to their dye content(s). Thus, the flow approach is fundamentally different than conventional karyotyping where chromosomes are classified within the context of a metaphase spread. Flow sorting allows purificationmore » of chromosomes that can be distinguished flow cytometrically. The authors describe the basic principles of flow cytometric chromosome classification i.e. flow karyotyping, and chromosome sorting and describe several applications. 30 refs., 8 figs.« less

Karyomorphology and karyotype asymmetry in the South American Caesalpinia species (Leguminosae and Caesalpinioideae).

PubMed

Rodrigues, P S; Souza, M M; Corrêa, R X

2014-10-20

With the purpose of addressing the pattern of karyotype evolution in Caesalpinia species, chromosome morphology was characterized in five species from Brazil, and karyotypic asymmetry was analyzed in 14 species from South America. All accessions had the chromosome number 2n = 24, which was first described here for Caesalpinia laxiflora Tul. and Cenostigma macrophyllum Tul. The karyotype formula of C. laxiflora, Caesalpinia pyramidalis Tul., and C. macrophyllum was 12 m. The formula varies amongst the populations of Caesalpinia bracteosa Tul. (11 m + 1 sm) and Caesalpinia echinata Lam. (10 m + 2 sm and 9 m + 3 sm). The intra- and interspecific variations in chromosome length were significant (analysis of variance, P < 0.05). Analyzing the asymmetry index (AI), revealed that Caesalpinia calycina Benth. had the most asymmetrical karyotype (AI = 10.52), whereas Caesalpinia paraguarienses (D. Parodi) Burkat. and Caesalpinia gilliesii (Hook.) Benth. had the most symmetrical karyotypes (AI = 0.91 and 1.10, respectively). There has been a trend to lower AI values for the Caesalpinia s.l. species assigned in Libidibia and intermediate values for those combined into Poincianella. On the other hand, the karyotypes of Erythrostemon species had extremely different AI values. This study confirms the existence of karyotype variability in Caesalpinia s.l. while revealing a possible uniformity of this trait in some of the new genera that are being divided from Caesalpinia s.l. More broadly, the 2n = 24 chromosome number is conserved. Metacentric chromosomes and low AI values predominate among Caesalpinia s.l. and Cenostigma.

Congenital heart disease and chromossomopathies detected by the karyotype

PubMed Central

Trevisan, Patrícia; Rosa, Rafael Fabiano M.; Koshiyama, Dayane Bohn; Zen, Tatiana Diehl; Paskulin, Giorgio Adriano; Zen, Paulo Ricardo G.

2014-01-01

OBJECTIVE: To review the relationship between congenital heart defects and chromosomal abnormalities detected by the karyotype. DATA SOURCES: Scientific articles were searched in MEDLINE database, using the descriptors "karyotype" OR "chromosomal" OR "chromosome" AND "heart defects, congenital". The research was limited to articles published in English from 1980 on. DATA SYNTHESIS: Congenital heart disease is characterized by an etiologically heterogeneous and not well understood group of lesions. Several researchers have evaluated the presence of chromosomal abnormalities detected by the karyotype in patients with congenital heart disease. However, most of the articles were retrospective studies developed in Europe and only some of the studied patients had a karyotype exam. In this review, only one study was conducted in Latin America, in Brazil. It is known that chromosomal abnormalities are frequent, being present in about one in every ten patients with congenital heart disease. Among the karyotype alterations in these patients, the most important is the trisomy 21 (Down syndrome). These patients often have associated extra-cardiac malformations, with a higher risk of morbidity and mortality, which makes heart surgery even more risky. CONCLUSIONS: Despite all the progress made in recent decades in the field of cytogenetic, the karyotype remains an essential tool in order to evaluate patients with congenital heart disease. The detailed dysmorphological physical examination is of great importance to indicate the need of a karyotype. PMID:25119760

Evidence of hexaploid karyotype in shortnose sturgeon.

PubMed

Fontana, Francesco; Congiu, Leonardo; Mudrak, Vincent A; Quattro, Joseph M; Smith, Theodore I J; Ware, Kent; Doroshov, Serge I

2008-02-01

A karyotype analysis by several staining techniques was carried out on triplicate samples of the shortnose sturgeon, Acipenser brevirostrum. The chromosome number was found to be 2n = 372 +/- 6. A representative karyotype of 374 chromosomes was composed of 178 metacentrics/submetacentrics and 196 telocentrics/acrocentrics and microchromosomes. The signals of fluorescent in situ hybridization (FISH) with a HindIII satellite DNA probe were visible on 14 chromosomes. The signals obtained with a PstI satellite DNA probe appeared on 12 chromosomes. The FISH with a 5S rDNA probe revealed fluorescent signals on 6 chromosomes. These last results, compared with 2 signals in species with about 120 chromosomes and 4 in species with 240, support the hypothesis that A. brevirostrum is a hexaploid species, probably of hybrid origin. Based on these results, we propose a model explaining speciation events occurring in sturgeons by hybridization, genome duplication, and diploidization.

An extensive molecular cytogenetic characterization in high-risk chronic lymphocytic leukemia identifies karyotype aberrations and TP53 disruption as predictors of outcome and chemorefractoriness

PubMed Central

Cavallari, Maurizio; Quaglia, Francesca Maria; Lista, Enrico; Urso, Antonio; Guardalben, Emanuele; Martinelli, Sara; Saccenti, Elena; Bassi, Cristian; Lupini, Laura; Bardi, Maria Antonella; Volta, Eleonora; Tammiso, Elisa; Melandri, Aurora; Negrini, Massimo

2017-01-01

We investigated whether karyotype analysis and mutational screening by next generation sequencing could predict outcome in 101 newly diagnosed chronic lymphocytic leukemia patients with high-risk features, as defined by the presence of unmutated IGHV gene and/or 11q22/17p13 deletion by FISH and/or TP53 mutations. Cytogenetic analysis showed favorable findings (normal karyotype and isolated 13q14 deletion) in 30 patients, unfavorable (complex karyotype and/or 17p13/11q22 deletion) in 34 cases and intermediate (all other abnormalities) in 36 cases. A complex karyotype was present in 21 patients. Mutations were detected in 56 cases and were associated with unmutated IGHV status (p = 0.040) and complex karyotype (p = 0.047). TP53 disruption (i.e. TP53 mutations and/or 17p13 deletion by FISH) correlated with the presence of ≥ 2 mutations (p = 0.001) and a complex karyotype (p = 0.012). By multivariate analysis, an advanced Binet stage (p < 0.001) and an unfavorable karyotype (p = 0.001) predicted a shorter time to first treatment. TP53 disruption (p = 0.019) and the unfavorable karyotype (p = 0.028) predicted a worse overall survival. A shorter time to chemorefractoriness was associated with TP53 disruption (p = 0.001) and unfavorable karyotype (p = 0.025). Patients with both unfavorable karyotype and TP53 disruption presented a dismal outcome (median overall survival and time to chemorefractoriness of 28.7 and 15.0 months, respectively). In conclusion, karyotype analysis refines risk stratification in high-risk CLL patients and could identify a subset of patients with highly unfavorable outcome requiring alternative treatments. PMID:28427204

Flat-Sky Pseudo-Cls Analysis for Weak Gravitational Lensing

NASA Astrophysics Data System (ADS)

Asgari, Marika; Taylor, Andy; Joachimi, Benjamin; Kitching, Thomas D.

2018-05-01

We investigate the use of estimators of weak lensing power spectra based on a flat-sky implementation of the 'Pseudo-CI' (PCl) technique, where the masked shear field is transformed without regard for masked regions of sky. This masking mixes power, and 'E'-convergence and 'B'-modes. To study the accuracy of forward-modelling and full-sky power spectrum recovery we consider both large-area survey geometries, and small-scale masking due to stars and a checkerboard model for field-of-view gaps. The power spectrum for the large-area survey geometry is sparsely-sampled and highly oscillatory, which makes modelling problematic. Instead, we derive an overall calibration for large-area mask bias using simulated fields. The effects of small-area star masks can be accurately corrected for, while the checkerboard mask has oscillatory and spiky behaviour which leads to percent biases. Apodisation of the masked fields leads to increased biases and a loss of information. We find that we can construct an unbiased forward-model of the raw PCls, and recover the full-sky convergence power to within a few percent accuracy for both Gaussian and lognormal-distributed shear fields. Propagating this through to cosmological parameters using a Fisher-Matrix formalism, we find we can make unbiased estimates of parameters for surveys up to 1,200 deg2 with 30 galaxies per arcmin2, beyond which the percent biases become larger than the statistical accuracy. This implies a flat-sky PCl analysis is accurate for current surveys but a Euclid-like survey will require higher accuracy.

Molecular analysis in true hermaphrodites with different karyotypes and similar phenotypes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Torres, L.; Cervantes, A.; Kofman-Alfaro, S.

1996-05-17

True hermaphroditism is characterized by the development of ovarian and testicular tissue in the same individual. Muellerian and Wolffian structures are usually present, and external genitalia are often ambiguous. The most frequent karyotype in these patients is 46,XX or various forms of mosaicism, whereas 46,XY is very rarely found. The phenotype in all these subjects is similar. We studied 10 true hermaphrodites. Six of them had a 46,XX chromosomal complement: 3 had been reared as males and 3 as females. The other 4 patients were mosaics: 3 were 46,XX/46,XY and one had a 46,XX/47,XXY karyotype. One of the 46,XX/46,XY mosaicsmore » was reared as a female, whereas the other 3 mosaics were reared as males. The sex of assignment in the 10 patients depended only on labio-scrotal differentiation. Molecular studies in 46,XX subjects documented the absence of Y centromeric sequences in all cases, arguing against hidden mosaicism. One patient presented Yp sequences (ZFY+, SRY+), which contrast with South African black 46,XX true hermaphrodites in whom no Y sequences were found. Molecular analysis in the subjects with mosaicism demonstrated the presence of Y centromeric and Yp sequences confirming the presence of a Y chromosome. Gonadal development, endocrine function, and phenotype in the 10 patients did not correlate with the presence of a Y chromosome or Y-derived sequences in the genome, confirming that true hermaphroditism is a heterogeneous condition. Both Mexican and non-South African 46,XX true hermaphrodites may be SRY positive. 51 refs., 3 figs., 2 tabs.« less

Karyotype Analysis in Wild Diploid, Tetraploid, and Hexaploid Strawberries, Fragaria (Rosaceae)

USDA-ARS?s Scientific Manuscript database

The Strawberry, genus Fragaria (Rosaceae) has a basic chromosome count of x = 7, and is comprised of 20 wild species having an euploid series from diploid (2n = 2x = 14) through decaploid (2n = 10x = 70). Few karyotypes of species in this genus have been reported. The objective of this research was ...

Zernike analysis of all-sky night brightness maps.

PubMed

Bará, Salvador; Nievas, Miguel; Sánchez de Miguel, Alejandro; Zamorano, Jaime

2014-04-20

All-sky night brightness maps (calibrated images of the night sky with hemispherical field-of-view (FOV) taken at standard photometric bands) provide useful data to assess the light pollution levels at any ground site. We show that these maps can be efficiently described and analyzed using Zernike circle polynomials. The relevant image information can be compressed into a low-dimensional coefficients vector, giving an analytical expression for the sky brightness and alleviating the effects of noise. Moreover, the Zernike expansions allow us to quantify in a straightforward way the average and zenithal sky brightness and its variation across the FOV, providing a convenient framework to study the time course of these magnitudes. We apply this framework to analyze the results of a one-year campaign of night sky brightness measurements made at the UCM observatory in Madrid.

Updating the maize karyotype by chromosome DNA sizing.

PubMed

Silva, Jéssica Coutinho; Carvalho, Carlos Roberto; Clarindo, Wellington Ronildo

2018-01-01

The karyotype is a basic concept regarding the genome, fundamentally described by the number and morphological features of all chromosomes. Chromosome class, centromeric index, intra- and interchromosomal asymmetry index, and constriction localization are important in clinical, systematic and evolutionary approaches. In spite of the advances in karyotype characterization made over the last years, new data about the chromosomes can be generated from quantitative methods, such as image cytometry. Therefore, using Zea mays L., this study aimed to update the species' karyotype by supplementing information on chromosome DNA sizing. After adjustment of the procedures, chromosome morphometry and class as well as knob localization enabled describing the Z. mays karyotype. In addition, applying image cytometry, DNA sizing was unprecedentedly measured for the arms and satellite of all chromosomes. This way, unambiguous identification of the chromosome pairs, and hence the assembly of 51 karyograms, were only possible after the DNA sizing of each chromosome, their arms and satellite portions. These accurate, quantitative and reproducible data also enabled determining the distribution and variation of DNA content in each chromosome. From this, a correlation between DNA amount and total chromosome length evidenced that the mean DNA content of chromosome 9 was higher than that of chromosome 8. The chromosomal DNA sizing updated the Z. mays karyotype, providing insights into its dynamic genome with regards to the organization of the ten chromosomes and their respective portions. Considering the results and the relevance of cytogenetics in the current scenario of comparative sequencing and genomics, chromosomal DNA sizing should be incorporated as an additional parameter for karyotype definition. Based on this study, it can be affirmed that cytogenetic approaches go beyond the simple morphological description of chromosomes.

Karyotype and genome size in Euterpe Mart. (Arecaceae) species.

PubMed

Oliveira, Ludmila Cristina; de Oliveira, Maria do Socorro Padilha; Davide, Lisete Chamma; Torres, Giovana Augusta

2016-01-01

Euterpe (Martius, 1823), a genus from Central and South America, has species with high economic importance in Brazil, because of their palm heart and fruits, known as açaí berries. Breeding programs have been conducted to increase yield and establish cultivation systems to replace the extraction of wild material. These programs need basic information about the genome of these species to better explore the available genetic variability. The aim of this study was to compare Euterpe edulis (Martius, 1824), Euterpe oleracea (Martius, 1824) and Euterpe precatoria (Martius, 1842), with regard to karyotype, type of interphase nucleus and nuclear DNA amount. Metaphase chromosomes and interphase nuclei from root tip meristematic cells were obtained by the squashing technique and solid stained for microscope analysis. The DNA amount was estimated by flow cytometry. There were previous reports on the chromosome number of Euterpe edulis and Euterpe oleracea, but chromosome morphology of these two species and the whole karyotype of Euterpe precatoria are reported for the first time. The species have 2n=36, a number considered as a pleisomorphic feature in Arecoideae since the modern species, according to floral morphology, have the lowest chromosome number (2n=28 and 2n=30). The three Euterpe species also have the same type of interphase nuclei, classified as semi-reticulate. The species differed on karyotypic formulas, on localization of secondary constriction and genome size. The data suggest that the main forces driving Euterpe karyotype evolution were structural rearrangements, such as inversions and translocations that alter chromosome morphology, and either deletion or amplification that led to changes in chromosome size.

Karyotype and genome size in Euterpe Mart. (Arecaceae) species

PubMed Central

Oliveira, Ludmila Cristina; de Oliveira, Maria do Socorro Padilha; Davide, Lisete Chamma; Torres, Giovana Augusta

2016-01-01

Abstract Euterpe (Martius, 1823), a genus from Central and South America, has species with high economic importance in Brazil, because of their palm heart and fruits, known as açaí berries. Breeding programs have been conducted to increase yield and establish cultivation systems to replace the extraction of wild material. These programs need basic information about the genome of these species to better explore the available genetic variability. The aim of this study was to compare Euterpe edulis (Martius, 1824), Euterpe oleracea (Martius, 1824) and Euterpe precatoria (Martius, 1842), with regard to karyotype, type of interphase nucleus and nuclear DNA amount. Metaphase chromosomes and interphase nuclei from root tip meristematic cells were obtained by the squashing technique and solid stained for microscope analysis. The DNA amount was estimated by flow cytometry. There were previous reports on the chromosome number of Euterpe edulis and Euterpe oleracea, but chromosome morphology of these two species and the whole karyotype of Euterpe precatoria are reported for the first time. The species have 2n=36, a number considered as a pleisomorphic feature in Arecoideae since the modern species, according to floral morphology, have the lowest chromosome number (2n=28 and 2n=30). The three Euterpe species also have the same type of interphase nuclei, classified as semi-reticulate. The species differed on karyotypic formulas, on localization of secondary constriction and genome size. The data suggest that the main forces driving Euterpe karyotype evolution were structural rearrangements, such as inversions and translocations that alter chromosome morphology, and either deletion or amplification that led to changes in chromosome size. PMID:27186334

Chromosome heteromorphism quantified by high-resolution bivariate flow karyotyping.

PubMed Central

Trask, B; van den Engh, G; Mayall, B; Gray, J W

1989-01-01

Maternal and paternal homologues of many chromosome types can be differentiated on the basis of their peak position in Hoechst 33258 versus chromomycin A3 bivariate flow karyotypes. We demonstrate here the magnitude of DNA content differences among normal chromosomes of the same type. Significant peak-position differences between homologues were observed for an average of four chromosome types in each of the karyotypes of 98 different individuals. The frequency of individuals with differences in homologue peak positions varied among chromosome types: e.g., chromosome 15, 61%; chromosome 3, 4%. Flow karyotypes of 33 unrelated individuals were compared to determine the range of peak position among normal chromosomes. Chromosomes Y, 21, 22, 15, 16, 13, 14, and 19 were most heteromorphic, and chromosomes 2-8 and X were least heteromorphic. The largest chromosome 21 was 45% larger than the smallest 21 chromosome observed. The base composition of the variable regions differed among chromosome types. DNA contents of chromosome variants determined from flow karyotypes were closely correlated to measurements of DNA content made of gallocyanin chrome alum-stained metaphase chromosomes on slides. Fluorescence in situ hybridization with chromosome-specific repetitive sequences indicated that variability in their copy number is partly responsible for peak-position variability in some chromosomes. Heteromorphic chromosomes are identified for which parental flow karyotype information will be essential if de novo rearrangements resulting in small DNA content changes are to be detected with flow karyotyping. Images Figure 5 PMID:2479266

Karyotype analysis in large sample cases from Shenyang Women's and Children's hospital: a study of 16,294 male infertility patients.

PubMed

Gao, M; Pang, H; Zhao, Y-H; Hua, J; Tong, D; Zhao, H; Liu, Y; Zhao, Y; Zhang, M; Yan, X-J; Chen, H; Ma, H-P; Jin, T-Y; Dong, S-L

2017-05-01

To explore that it is necessary to routinely detect chromosomes in infertile patients, we investigated peripheral blood lymphocyte karyotype in 16,294 male infertile patients in the north-east of China and analysed the incidence and type of chromosomal anomaly and polymorphism. G-banding karyotype analysis of peripheral blood lymphocytes was performed in 16,294 cases. Semen analysis was performed three times in all the men. PCR and FISH confirmed the presence of the SRY gene. The rate of chromosomal anomaly in the 16,294 male infertile patients was 4.15% (677/16,294). The rates of chromosomal anomaly were 0.24% in normal semen group, 12.6% in light oligoasthenospermia group, 4.7% in moderate-to-severe oligoasthenospermia group and 9.59% in azoospermia group. There are two male infertile patients with 45,X chromosome karyotype. One X male patient had confirmed the presence of the SRY gene and FISH analysis demonstrated its location on the p arm of chromosome 13. The other X male patient had not found SRY gene in its whole-genome DNA. Meanwhile, sperm motility is slightly oligo-asthenozoospermic at the age of 35-39 and nearly azoospermic at the age of 40-45. As the rates of chromosomal anomaly are 0.24% and 12.6% even in normal semen group and light oligoasthenospermia group, the rates of chromosomal polymorphism are 5.36% and 25.51% in normal semen group and light oligoasthenospermia group, respectively; it is necessary to explore peripheral blood lymphocyte karyotype in all infertile couples. We mentioned that Y, 1, 2, 9 and 12 chromosomes were quite important about male infertility. These findings demonstrate that autosomal retention of SRY can be submicroscopic and emphasise the importance of PCR and FISH in the genetic workup of the monosomic X male. At the same time, it suggested that male infertility might be related to meiotic disturbances with spermatogenetic arrest in Y-autosome translocations, which could result in infertility by reduction of sperm

Updating the maize karyotype by chromosome DNA sizing

PubMed Central

2018-01-01

The karyotype is a basic concept regarding the genome, fundamentally described by the number and morphological features of all chromosomes. Chromosome class, centromeric index, intra- and interchromosomal asymmetry index, and constriction localization are important in clinical, systematic and evolutionary approaches. In spite of the advances in karyotype characterization made over the last years, new data about the chromosomes can be generated from quantitative methods, such as image cytometry. Therefore, using Zea mays L., this study aimed to update the species’ karyotype by supplementing information on chromosome DNA sizing. After adjustment of the procedures, chromosome morphometry and class as well as knob localization enabled describing the Z. mays karyotype. In addition, applying image cytometry, DNA sizing was unprecedentedly measured for the arms and satellite of all chromosomes. This way, unambiguous identification of the chromosome pairs, and hence the assembly of 51 karyograms, were only possible after the DNA sizing of each chromosome, their arms and satellite portions. These accurate, quantitative and reproducible data also enabled determining the distribution and variation of DNA content in each chromosome. From this, a correlation between DNA amount and total chromosome length evidenced that the mean DNA content of chromosome 9 was higher than that of chromosome 8. The chromosomal DNA sizing updated the Z. mays karyotype, providing insights into its dynamic genome with regards to the organization of the ten chromosomes and their respective portions. Considering the results and the relevance of cytogenetics in the current scenario of comparative sequencing and genomics, chromosomal DNA sizing should be incorporated as an additional parameter for karyotype definition. Based on this study, it can be affirmed that cytogenetic approaches go beyond the simple morphological description of chromosomes. PMID:29293613

Karyotype diversity and genome size variation in Neotropical Maxillariinae orchids.

PubMed

Moraes, A P; Koehler, S; Cabral, J S; Gomes, S S L; Viccini, L F; Barros, F; Felix, L P; Guerra, M; Forni-Martins, E R

2017-03-01

Orchidaceae is a widely distributed plant family with very diverse vegetative and floral morphology, and such variability is also reflected in their karyotypes. However, since only a low proportion of Orchidaceae has been analysed for chromosome data, greater diversity may await to be unveiled. Here we analyse both genome size (GS) and karyotype in two subtribes recently included in the broadened Maxillariinea to detect how much chromosome and GS variation there is in these groups and to evaluate which genome rearrangements are involved in the species evolution. To do so, the GS (14 species), the karyotype - based on chromosome number, heterochromatic banding and 5S and 45S rDNA localisation (18 species) - was characterised and analysed along with published data using phylogenetic approaches. The GS presented a high phylogenetic correlation and it was related to morphological groups in Bifrenaria (larger plants - higher GS). The two largest GS found among genera were caused by different mechanisms: polyploidy in Bifrenaria tyrianthina and accumulation of repetitive DNA in Scuticaria hadwenii. The chromosome number variability was caused mainly through descending dysploidy, and x=20 was estimated as the base chromosome number. Combining GS and karyotype data with molecular phylogeny, our data provide a more complete scenario of the karyotype evolution in Maxillariinae orchids, allowing us to suggest, besides dysploidy, that inversions and transposable elements as two mechanisms involved in the karyotype evolution. Such karyotype modifications could be associated with niche changes that occurred during species evolution. © 2016 German Botanical Society and The Royal Botanical Society of the Netherlands.

Molecular Cytogenetic Analysis of One African and Five Asian Macaque Species Reveals Identical Karyotypes as in Mandrill.

PubMed

Sangpakdee, Wiwat; Tanomtong, Alongkoad; Chaveerach, Arunrat; Pinthong, Krit; Trifonov, Vladimir; Loth, Kristina; Hensel, Christiana; Liehr, Thomas; Weise, Anja; Fan, Xiaobo

2018-04-01

The question how evolution and speciation work is one of the major interests of biology. Especially, genetic including karyotypic evolution within primates is of special interest due to the close phylogenetic position of Macaca and Homo sapiens and the role as in vivo models in medical research, neuroscience, behavior, pharmacology, reproduction and Acquired Immune Deficiency Syndrome (AIDS). Karyotypes of five macaque species from South East Asia and of one macaque species as well as mandrill from Africa were analyzed by high resolution molecular cytogenetics to obtain new insights into karyotypic evolution of old world monkeys. Molecular cytogenetics applying human probes and probe sets was applied in chromosomes of Macaca arctoides, M. fascicularis, M. nemestrina, M. assamensis, M. sylvanus, M. mulatta and Mandrillus sphinx. Established two- to multicolor-fluorescence in situ hybridization (FISH) approaches were applied. Locus-specific probes, whole and partial chromosome paint probes were hybridized. Especially the FISH-banding approach multicolor-banding (MCB) as well as probes oriented towards heterochromatin turned out to be highly efficient for interspecies comparison. Karyotypes of all seven studied species could be characterized in detail. Surprisingly, no evolutionary conserved differences were found among macaques, including mandrill. Between the seven here studied and phenotypically so different species we expected several via FISH detectable karyoypic and submicroscopic changes and were surprised to find none of them on a molecular cytogenetic level. Spatial separation, may explain the speciation and different evolution for some of them, like African M. sylvanus, Mandrillus sphinx and the South Asian macaques. However, for the partially or completely overlapping habitats of the five studied South Asian macaques the species separation process can also not be deduced to karyotypic separation.

Karyotype Analysis of Four Vicia Species using In Situ Hybridization with Repetitive Sequences

PubMed Central

NAVRÁTILOVÁ, ALICE; NEUMANN, PAVEL; MACAS, JIŘÍ

2003-01-01

Mitotic chromosomes of four Vicia species (V. sativa, V. grandiflora, V. pannonica and V. narbonensis) were subjected to in situ hybridization with probes derived from conserved plant repetitive DNA sequences (18S–25S and 5S rDNA, telomeres) and genus‐specific satellite repeats (VicTR‐A and VicTR‐B). Numbers and positions of hybridization signals provided cytogenetic landmarks suitable for unambiguous identification of all chromosomes, and establishment of the karyotypes. The VicTR‐A and ‐B sequences, in particular, produced highly informative banding patterns that alone were sufficient for discrimination of all chromosomes. However, these patterns were not conserved among species and thus could not be employed for identification of homologous chromosomes. This fact, together with observed variations in positions and numbers of rDNA loci, suggests considerable divergence between karyotypes of the species studied. PMID:12770847

Global horizontal irradiance clear sky models : implementation and analysis.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stein, Joshua S.; Hansen, Clifford W.; Reno, Matthew J.

2012-03-01

Clear sky models estimate the terrestrial solar radiation under a cloudless sky as a function of the solar elevation angle, site altitude, aerosol concentration, water vapor, and various atmospheric conditions. This report provides an overview of a number of global horizontal irradiance (GHI) clear sky models from very simple to complex. Validation of clear-sky models requires comparison of model results to measured irradiance during clear-sky periods. To facilitate validation, we present a new algorithm for automatically identifying clear-sky periods in a time series of GHI measurements. We evaluate the performance of selected clear-sky models using measured data from 30 differentmore » sites, totaling about 300 site-years of data. We analyze the variation of these errors across time and location. In terms of error averaged over all locations and times, we found that complex models that correctly account for all the atmospheric parameters are slightly more accurate than other models, but, primarily at low elevations, comparable accuracy can be obtained from some simpler models. However, simpler models often exhibit errors that vary with time of day and season, whereas the errors for complex models vary less over time.« less

CFHT's SkyProbe: a real-time sky-transparency monitor

NASA Astrophysics Data System (ADS)

Cuillandre, Jean-Charles; Magnier, Eugene A.; Isani, Sidik; Sabin, Daniel; Knight, Wiley; Kras, Simon; Lai, Kamson

2002-12-01

We have developed a system at the Canada-France-Hawaii Telescope (CFHT), SkyProbe, which allows for the direct measurement of the true attenuation by clouds once per minute, within a percent, directly on the field pointed by the telescope. It has been possible to make this system relatively inexpensively due to the low-cost CCD cameras from the amateur market. A crucial addition to this hardware is the quite recent availability of a full-sky photometry catalog at the appropriate depth: the Tycho catalog, from the Hipparcos mission. The central element is the automatic data analysis pipeline developed at CFHT, Elixir, for the improved operation of the CFHT wide-field imagers, CFH12K and MegaCam. SkyProbe"s FITS images are processed in real-time and the pipeline output (a zero point attenuation) provides the current sky transmission to the observers and helps immediate decision making. These measurements are also attached to the archived data, adding a key criteria for future use by other astronomers.

Karyotyping human chromosomes by optical and x-ray ptychography methods

DOE PAGES

Shemilt, Laura; Verbanis, Ephanielle; Schwenke, Joerg; ...

2015-02-01

Sorting and identifying chromosomes, a process known as karyotyping, is widely used to detect changes in chromosome shapes and gene positions. In a karyotype the chromosomes are identified by their size and therefore this process can be performed by measuring macroscopic structural variables. Chromosomes contain a specific number of basepairs that linearly correlate with their size; therefore, it is possible to perform a karyotype on chromosomes using their mass as an identifying factor. Here, we obtain the first images, to our knowledge, of chromosomes using the novel imaging method of ptychography. We can use the images to measure the massmore » of chromosomes and perform a partial karyotype from the results. Lastly, we also obtain high spatial resolution using this technique with synchrotron source x-rays.« less

Karyotyping human chromosomes by optical and x-ray ptychography methods

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shemilt, Laura; Verbanis, Ephanielle; Schwenke, Joerg

Sorting and identifying chromosomes, a process known as karyotyping, is widely used to detect changes in chromosome shapes and gene positions. In a karyotype the chromosomes are identified by their size and therefore this process can be performed by measuring macroscopic structural variables. Chromosomes contain a specific number of basepairs that linearly correlate with their size; therefore, it is possible to perform a karyotype on chromosomes using their mass as an identifying factor. Here, we obtain the first images, to our knowledge, of chromosomes using the novel imaging method of ptychography. We can use the images to measure the massmore » of chromosomes and perform a partial karyotype from the results. Lastly, we also obtain high spatial resolution using this technique with synchrotron source x-rays.« less

Is the Karyotype of Neotropical Boid Snakes Really Conserved? Cytotaxonomy, Chromosomal Rearrangements and Karyotype Organization in the Boidae Family

PubMed Central

Viana, Patrik F.; Ribeiro, Leila B.; Souza, George Myller; Chalkidis, Hipócrates de Menezes; Gross, Maria Claudia; Feldberg, Eliana

2016-01-01

Boids are primitive snakes from a basal lineage that is widely distributed in Neotropical region. Many of these species are both morphologically and biogeographically divergent, and the relationship among some species remains uncertain even with evolutionary and phylogenetic studies being proposed for the group. For a better understanding of the evolutionary relationship between these snakes, we cytogenetically analysed 7 species and 3 subspecies of Neotropical snakes from the Boidae family using different chromosomal markers. The karyotypes of Boa constrictor occidentalis, Corallus hortulanus, Eunectes notaeus, Epicrates cenchria and Epicrates assisi are presented here for the first time with the redescriptions of the karyotypes of Boa constrictor constrictor, B. c. amarali, Eunectes murinus and Epicrates crassus. The three subspecies of Boa, two species of Eunectes and three species of Epicrates exhibit 2n = 36 chromosomes. In contrast, C. hortulanus presented a totally different karyotype composition for the Boidae family, showing 2n = 40 chromosomes with a greater number of macrochromosomes. Furthermore, chromosomal mapping of telomeric sequences revealed the presence of interstitial telomeric sites (ITSs) on many chromosomes in addition to the terminal markings on all chromosomes of all taxa analysed, with the exception of E. notaeus. Thus, we demonstrate that the karyotypes of these snakes are not as highly conserved as previously thought. Moreover, we provide an overview of the current cytotaxonomy of the group. PMID:27494409

Is the Karyotype of Neotropical Boid Snakes Really Conserved? Cytotaxonomy, Chromosomal Rearrangements and Karyotype Organization in the Boidae Family.

PubMed

Viana, Patrik F; Ribeiro, Leila B; Souza, George Myller; Chalkidis, Hipócrates de Menezes; Gross, Maria Claudia; Feldberg, Eliana

2016-01-01

Boids are primitive snakes from a basal lineage that is widely distributed in Neotropical region. Many of these species are both morphologically and biogeographically divergent, and the relationship among some species remains uncertain even with evolutionary and phylogenetic studies being proposed for the group. For a better understanding of the evolutionary relationship between these snakes, we cytogenetically analysed 7 species and 3 subspecies of Neotropical snakes from the Boidae family using different chromosomal markers. The karyotypes of Boa constrictor occidentalis, Corallus hortulanus, Eunectes notaeus, Epicrates cenchria and Epicrates assisi are presented here for the first time with the redescriptions of the karyotypes of Boa constrictor constrictor, B. c. amarali, Eunectes murinus and Epicrates crassus. The three subspecies of Boa, two species of Eunectes and three species of Epicrates exhibit 2n = 36 chromosomes. In contrast, C. hortulanus presented a totally different karyotype composition for the Boidae family, showing 2n = 40 chromosomes with a greater number of macrochromosomes. Furthermore, chromosomal mapping of telomeric sequences revealed the presence of interstitial telomeric sites (ITSs) on many chromosomes in addition to the terminal markings on all chromosomes of all taxa analysed, with the exception of E. notaeus. Thus, we demonstrate that the karyotypes of these snakes are not as highly conserved as previously thought. Moreover, we provide an overview of the current cytotaxonomy of the group.

Exploring karyotype diversity of Argentinian Guaraní maize landraces: Relationship among South American maize

PubMed Central

Poggio, Lidia

2018-01-01

In Argentina there are two different centers of maize diversity, the Northeastern (NEA) and the Northwestern (NWA) regions of the country. In NEA, morphological studies identified 15 landraces cultivated by the Guaraní communities in Misiones Province. In the present study we analyzed the karyotype diversity of 20 populations of Guaraní maize landraces through classical and molecular cytogenetic analyses. Our results demonstrate significant intra and inter-populational variation in the percentage, number, size, chromosome position and frequencies of the heterochromatic blocks, which are called knobs. Knob sequence analysis (180-bp and TR-1) did not show significant differences among Guaraní populations. B chromosomes were not detected, and abnormal 10 (AB10) chromosomes were found with low frequency (0.1≥f ≤0.40) in six populations. Our results allowed karyotypic characterization of each analyzed population, defining for the first time the chromosomal constitution of maize germplasm from NEA. The multivariate analysis (PCoA and UPGMA) of karyotype parameters allowed the distinction between two populations groups: the Popcorn and the Floury maize populations. These results are in agreement with previously published microsatellite and morphological/phenological studies. Finally, we compared our karyotype results with those previously reported for NWA and Central Region of South America maize. Our data suggest that there are important differences between maize from NEA and NWA at the karyotype level, supporting the hypothesis that there are two pathways of input of South America maize. Our results also confirm the existence of two centers of diversification of Argentinian native maize, NWA and NEA. This work contributes new knowledge about maize diversity, which is relevant for future plans to improve commercial maize, and for conservation of agrobiodiversity. PMID:29879173

Exploring karyotype diversity of Argentinian Guaraní maize landraces: Relationship among South American maize.

PubMed

Realini, María Florencia; Poggio, Lidia; Cámara Hernández, Julián; González, Graciela Esther

2018-01-01

In Argentina there are two different centers of maize diversity, the Northeastern (NEA) and the Northwestern (NWA) regions of the country. In NEA, morphological studies identified 15 landraces cultivated by the Guaraní communities in Misiones Province. In the present study we analyzed the karyotype diversity of 20 populations of Guaraní maize landraces through classical and molecular cytogenetic analyses. Our results demonstrate significant intra and inter-populational variation in the percentage, number, size, chromosome position and frequencies of the heterochromatic blocks, which are called knobs. Knob sequence analysis (180-bp and TR-1) did not show significant differences among Guaraní populations. B chromosomes were not detected, and abnormal 10 (AB10) chromosomes were found with low frequency (0.1≥f ≤0.40) in six populations. Our results allowed karyotypic characterization of each analyzed population, defining for the first time the chromosomal constitution of maize germplasm from NEA. The multivariate analysis (PCoA and UPGMA) of karyotype parameters allowed the distinction between two populations groups: the Popcorn and the Floury maize populations. These results are in agreement with previously published microsatellite and morphological/phenological studies. Finally, we compared our karyotype results with those previously reported for NWA and Central Region of South America maize. Our data suggest that there are important differences between maize from NEA and NWA at the karyotype level, supporting the hypothesis that there are two pathways of input of South America maize. Our results also confirm the existence of two centers of diversification of Argentinian native maize, NWA and NEA. This work contributes new knowledge about maize diversity, which is relevant for future plans to improve commercial maize, and for conservation of agrobiodiversity.

The karyotype of Nothoscordum arenarium Herter (Gilliesioideae, Alliaceae): A populational and cytomolecular analysis

PubMed Central

2009-01-01

The genus Nothoscordum Kunth comprises approximately 20 species native to South America. Karyologically, the genus is remarkable for its large chromosomes and Robertsonian translocations. Variation in chromosome number has been recorded in a few polyploid species and it is unknown among diploids. This study presents the chromosome number and morphology of 53 individuals of seven populations of N. arenarium Herter (2n = 10). In addition, karyotype analyses after C-banding, staining with CMA and DAPI, and in situ hybridization with 5S and 45S rDNA probes were performed in six individuals from one population. All individuals exhibited 2n = 10 (6M + 4A), except for one tetraploid (2n = 20, 12M + 8A) and one triploid (2n = 15, 9M + 6A) plant. C-banding revealed the presence of CMA+ /DAPI - heterochromatin in the short arm and in the proximal region of the long arm of all acrocentric chromosomes. The 45S rDNA sites co-localized with the CMA + regions of the acrocentrics short arms, while the 5S rDNA probe only hybridized with the subterminal region of a pair of metacentric chromosomes. A change in the pattern of CMA bands and rDNA sites was observed in only one individual bearing a reciprocal translocation involving the long arm of a metacentric and the long arm of an acrocentric chromosome. These data suggest that, despite isolated cases of polyploidy and translocation, the karyotype of N. arenarium is very stable and the karyotypic instability described for other species may be associated with their polyploid condition. PMID:21637654

Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies.

PubMed

Bakker, Bjorn; Taudt, Aaron; Belderbos, Mirjam E; Porubsky, David; Spierings, Diana C J; de Jong, Tristan V; Halsema, Nancy; Kazemier, Hinke G; Hoekstra-Wakker, Karina; Bradley, Allan; de Bont, Eveline S J M; van den Berg, Anke; Guryev, Victor; Lansdorp, Peter M; Colomé-Tatché, Maria; Foijer, Floris

2016-05-31

Chromosome instability leads to aneuploidy, a state in which cells have abnormal numbers of chromosomes, and is found in two out of three cancers. In a chromosomal instable p53 deficient mouse model with accelerated lymphomagenesis, we previously observed whole chromosome copy number changes affecting all lymphoma cells. This suggests that chromosome instability is somehow suppressed in the aneuploid lymphomas or that selection for frequently lost/gained chromosomes out-competes the CIN-imposed mis-segregation. To distinguish between these explanations and to examine karyotype dynamics in chromosome instable lymphoma, we use a newly developed single-cell whole genome sequencing (scWGS) platform that provides a complete and unbiased overview of copy number variations (CNV) in individual cells. To analyse these scWGS data, we develop AneuFinder, which allows annotation of copy number changes in a fully automated fashion and quantification of CNV heterogeneity between cells. Single-cell sequencing and AneuFinder analysis reveals high levels of copy number heterogeneity in chromosome instability-driven murine T-cell lymphoma samples, indicating ongoing chromosome instability. Application of this technology to human B cell leukaemias reveals different levels of karyotype heterogeneity in these cancers. Our data show that even though aneuploid tumours select for particular and recurring chromosome combinations, single-cell analysis using AneuFinder reveals copy number heterogeneity. This suggests ongoing chromosome instability that other platforms fail to detect. As chromosome instability might drive tumour evolution, karyotype analysis using single-cell sequencing technology could become an essential tool for cancer treatment stratification.

The genome diversity and karyotype evolution of mammals

PubMed Central

2011-01-01

The past decade has witnessed an explosion of genome sequencing and mapping in evolutionary diverse species. While full genome sequencing of mammals is rapidly progressing, the ability to assemble and align orthologous whole chromosome regions from more than a few species is still not possible. The intense focus on building of comparative maps for companion (dog and cat), laboratory (mice and rat) and agricultural (cattle, pig, and horse) animals has traditionally been used as a means to understand the underlying basis of disease-related or economically important phenotypes. However, these maps also provide an unprecedented opportunity to use multispecies analysis as a tool for inferring karyotype evolution. Comparative chromosome painting and related techniques are now considered to be the most powerful approaches in comparative genome studies. Homologies can be identified with high accuracy using molecularly defined DNA probes for fluorescence in situ hybridization (FISH) on chromosomes of different species. Chromosome painting data are now available for members of nearly all mammalian orders. In most orders, there are species with rates of chromosome evolution that can be considered as 'default' rates. The number of rearrangements that have become fixed in evolutionary history seems comparatively low, bearing in mind the 180 million years of the mammalian radiation. Comparative chromosome maps record the history of karyotype changes that have occurred during evolution. The aim of this review is to provide an overview of these recent advances in our endeavor to decipher the karyotype evolution of mammals by integrating the published results together with some of our latest unpublished results. PMID:21992653

Extensive Karyotype Reorganization in the Fish Gymnotus arapaima (Gymnotiformes, Gymnotidae) Highlighted by Zoo-FISH Analysis.

PubMed

Machado, Milla de Andrade; Pieczarka, Julio C; Silva, Fernando H R; O'Brien, Patricia C M; Ferguson-Smith, Malcolm A; Nagamachi, Cleusa Y

2018-01-01

The genus Gymnotus (Gymnotiformes) contains over 40 species of freshwater electric fishes exhibiting a wide distribution throughout Central and South America, and being particularly prevalent in the Amazon basin. Cytogenetics has been an important tool in the cytotaxonomy and elucidation of evolutionary processes in this genus, including the unraveling the variety of diploid chromosome number (2 n = from 34 to 54), the high karyotype diversity among species with a shared diploid number, different sex chromosome systems, and variation in the distribution of several Repetitive DNAs and colocation and association between those sequences. Recently whole chromosome painting (WCP) has been used for tracking the chromosomal evolution of the genus, showing highly reorganized karyotypes and the conserved synteny of the NOR bearing par within the clade G. carapo . In this study, painting probes derived from the chromosomes of G. carapo (GCA, 2 n = 42, 30 m/sm + 12 st/a) were hybridized to the mitotic metaphases of G. arapaima (GAR, 2 n = 44, 24 m/sm + 20 st/a). Our results uncovered chromosomal rearrangements and a high number of repetitive DNA regions. From the 12 chromosome pairs of G. carapo that can be individually differentiated (GCA1-3, 6, 7, 9, 14, 16, and 18-21), six pairs (GCA 1, 9, 14, 18, 20, 21) show conserved homology with GAR, five pairs (GCA 1, 9, 14, 20, 21) are also shared with cryptic species G. carapo 2 n = 40 (34 m/sm + 6 st/a) and only the NOR bearing pair (GCA 20) is shared with G. capanema (GCP 2 n = 34, 20 m/sm + 14 st/a). The remaining chromosomes are reorganized in the karyotype of GAR. Despite the close phylogenetic relationships of these species, our chromosome painting studies demonstrate an extensive reorganization of their karyotypes.

Extensive Karyotype Reorganization in the Fish Gymnotus arapaima (Gymnotiformes, Gymnotidae) Highlighted by Zoo-FISH Analysis

PubMed Central

Machado, Milla de Andrade; Pieczarka, Julio C.; Silva, Fernando H. R.; O'Brien, Patricia C. M.; Ferguson-Smith, Malcolm A.; Nagamachi, Cleusa Y.

2018-01-01

The genus Gymnotus (Gymnotiformes) contains over 40 species of freshwater electric fishes exhibiting a wide distribution throughout Central and South America, and being particularly prevalent in the Amazon basin. Cytogenetics has been an important tool in the cytotaxonomy and elucidation of evolutionary processes in this genus, including the unraveling the variety of diploid chromosome number (2n = from 34 to 54), the high karyotype diversity among species with a shared diploid number, different sex chromosome systems, and variation in the distribution of several Repetitive DNAs and colocation and association between those sequences. Recently whole chromosome painting (WCP) has been used for tracking the chromosomal evolution of the genus, showing highly reorganized karyotypes and the conserved synteny of the NOR bearing par within the clade G. carapo. In this study, painting probes derived from the chromosomes of G. carapo (GCA, 2n = 42, 30 m/sm + 12 st/a) were hybridized to the mitotic metaphases of G. arapaima (GAR, 2n = 44, 24 m/sm + 20 st/a). Our results uncovered chromosomal rearrangements and a high number of repetitive DNA regions. From the 12 chromosome pairs of G. carapo that can be individually differentiated (GCA1–3, 6, 7, 9, 14, 16, and 18–21), six pairs (GCA 1, 9, 14, 18, 20, 21) show conserved homology with GAR, five pairs (GCA 1, 9, 14, 20, 21) are also shared with cryptic species G. carapo 2n = 40 (34 m/sm + 6 st/a) and only the NOR bearing pair (GCA 20) is shared with G. capanema (GCP 2n = 34, 20 m/sm + 14 st/a). The remaining chromosomes are reorganized in the karyotype of GAR. Despite the close phylogenetic relationships of these species, our chromosome painting studies demonstrate an extensive reorganization of their karyotypes. PMID:29434621

A new karyotype for Rhipidomys (Rodentia, Cricetidae) from Southeastern Brazil

PubMed Central

de Carvalho, Ana Heloisa; Lopes, Maria Olímpia Garcia; Svartman, Marta

2012-01-01

Abstract In this work we present a new karyotype for Rhipidomys Tschudi, 1845 (Cricetidae, Rodentia) from Brazil. Our chromosome analyses included GTG- and CBG-banding patterns, the localization of the nucleolus organizer regions after silver staining (Ag-NORs) and fluorescence in situ hybridization (FISH) with a telomere probe. The new karyotype is composed of 44 chromosomes and has a fundamental number (number of autosomal arms) of 48. Most Rhipidomys species already karyotyped presented similar complements with 2n=44, but their fundamental numbers varied from FN=46 to 80, a variation that has been mainly attributed to pericentric inversions. The comparison of this new karyotype to those of other Rhipidomys already reported allowed us to conclude that it is a distinctive chromosome complement, which can be of great use as a tool for the very complicated taxonomic identification in this genus. PMID:24260664

Ovotesticular disorder of sexual development and a rare 46,XX/47,XXY karyotype.

PubMed

Ozsu, Elif; Mutlu, Gul Yesiltepe; Cizmecioglu, Filiz M; Ekingen, Gülsen; Muezzinoglu, Bahar; Hatun, Sukru

2013-01-01

Ovotesticular disorder of sexual development (DSD) is characterized by the presence of both ovarian and testicular tissues in the same individual. The most common karyotype is 46,XX. Here, we report the case of a boy with a 46,XX/47,XXY karyotype diagnosed as ovotesticular DSD by gonadal biopsy. A 5-month-old boy presented with hypospadias, unilateral cryptorchidism, and a micropenis. Pelvic magnetic resonance imaging revealed a suspicious gonad tissue that is solid in structure in the right scrotum and a suspicious gonad that is cystic in structure in the left inguinal canal. He underwent a diagnostic laparoscopy. Cytogenetic analysis of peripheral blood revealed a 46,XX/47,XXY karyotype. Histopathologic examination of the left gonad showed ovarian tissue containing primordial follicles with ipsilateral undifferentiated tuba uterina. The right gonad showed immature testis tissue. He underwent left gonadectomy and hypospadias repair, and was raised as a male. Through this rare case, we highlight the importance of histological and cytogenetic investigation in DSD.

Sequential karyotyping in Burkitt lymphoma reveals a linear clonal evolution with increase in karyotype complexity and a high frequency of recurrent secondary aberrations.

PubMed

Aukema, Sietse M; Theil, Laura; Rohde, Marius; Bauer, Benedikt; Bradtke, Jutta; Burkhardt, Birgit; Bonn, Bettina R; Claviez, Alexander; Gattenlöhner, Stefan; Makarova, Olga; Nagel, Inga; Oschlies, Ilske; Pott, Christiane; Szczepanowski, Monika; Traulsen, Arne; Kluin, Philip M; Klapper, Wolfram; Siebert, Reiner; Murga Penas, Eva M

2015-09-01

Typical Burkitt lymphoma is characterized by an IG-MYC translocation and overall low genomic complexity. Clinically, Burkitt lymphoma has a favourable prognosis with very few relapses. However, the few patients experiencing disease progression and/or relapse have a dismal outcome. Here we report cytogenetic findings of seven cases of Burkitt lymphoma in which sequential karyotyping was performed at time of diagnosis and/or disease progression/relapse(s). After case selection, karyotype re-review and additional molecular analyses were performed in six paediatric cases, treated in Berlin-Frankfurt-Münster-Non-Hodgkin lymphoma study group trials, and one additional adult patient. Moreover, we analysed 18 cases of Burkitt lymphoma from the Mitelman database in which sequential karyotyping was performed. Our findings show secondary karyotypes to have a significant increase in load of cytogenetic aberrations with a mean number of 2, 5 and 8 aberrations for primary, secondary and third investigations. Importantly, this increase in karyotype complexity seemed to result from recurrent secondary chromosomal changes involving mainly trisomy 21, gains of 1q and 7q, losses of 6q, 11q, 13q, and 17p. In addition, our findings indicate a linear clonal evolution to be the predominant manner of cytogenetic evolution. Our data may provide a biological framework for the dismal outcome of progressive and relapsing Burkitt lymphoma. © 2015 John Wiley & Sons Ltd.

Molecular cytogenetic analysis of monoecious hemp (Cannabis sativa L.) cultivars reveals its karyotype variations and sex chromosomes constitution.

PubMed

Razumova, Olga V; Alexandrov, Oleg S; Divashuk, Mikhail G; Sukhorada, Tatiana I; Karlov, Gennady I

2016-05-01

Hemp (Cannabis sativa L., 2n = 20) is a dioecious plant. Sex expression is controlled by an X-to-autosome balance system consisting of the heteromorphic sex chromosomes XY for males and XX for females. Genetically monoecious hemp offers several agronomic advantages compared to the dioecious cultivars that are widely used in hemp cultivation. The male or female origin of monoecious maternal plants is unknown. Additionally, the sex chromosome composition of monoecious hemp forms remains unknown. In this study, we examine the sex chromosome makeup in monoecious hemp using a cytogenetic approach. Eight monoecious and two dioecious cultivars were used. The DNA of 210 monoecious plants was used for PCR analysis with the male-associated markers MADC2 and SCAR323. All monoecious plants showed female amplification patterns. Fluorescence in situ hybridization (FISH) with the subtelomeric CS-1 probe to chromosomes plates and karyotyping revealed a lack of Y chromosome and presence of XX sex chromosomes in monoecious cultivars with the chromosome number 2n = 20. There was a high level of intra- and intercultivar karyotype variation detected. The results of this study can be used for further analysis of the genetic basis of sex expression in plants.

Karyotype of canine soft tissue sarcomas: a multi-colour, multi-species approach to canine chromosome painting.

PubMed

Milne, Bruce S; Hoather, Tess; O'Brien, Patricia C M; Yang, Fengtang; Ferguson-Smith, Malcolm A; Dobson, Jane; Sargan, David

2004-01-01

Many canine tumour types represent useful models for tumours also found in humans. Studies of chromosomal abnormalities in canine tumours have been impeded by the complexity of the canine karyotype (2n = 78), which has made accurate identification of rearranged chromosomes difficult and laborious. To overcome this difficulty we have developed a seven-colour paint system for canine chromosomes, with six sets of chromosome paints covering all chromosomes except Y. Several pairs of canine autosomes co-locate in the flow karyotype. To distinguish these autosomes from each other, paint sets were supplemented with chromosomes of red fox and Japanese raccoon dog. Paints were used in fluorescence in-situ hybridization to analyse karyotypes in fourteen canine soft tissue sarcomas. Rearranged karyotypes were observed in seven tumours, but there was evidence for loss of rearrangement during tissue culture. Five tumours had rearrangements involving four chromosomes or fewer; one, a chondrosarcoma, had lost seven chromosomes whilst the last, a spindle cell sarcoma, had rearrangements involving eighteen chromosome pairs. The paint sets described here facilitate the complete cytogenetic analysis of balanced translocations and other inter-chromosomal rearrangements in canine tumours. We believe that this is the first canine tumour series to be subjected to this level of analysis.

Karyotype rearrangements and telomere analysis in Myzus persicae (Hemiptera, Aphididae) strains collected on Lavandula sp. plants

PubMed Central

Mandrioli, Mauro; Zanasi, Federica; Manicardi, Gian Carlo

2014-01-01

Abstract Karyotype analysis of nine strains of the peach-potato aphid Myzus persicae (Sulzer, 1776), collected on Lavandula sp. plants, evidenced showed that five of them had a standard 2n = 12 karyotype, one possessed a fragmentation of the X chromosome occurring at the telomere opposite to the NOR-bearing one and three strains had a chromosome number 2n = 11 due to a non-reciprocal translocation of an autosome A3 onto an A1 chromosome. Interestingly, the terminal portion of the autosome A1 involved in the translocation was the same in all the three strains, as evidenced by FISH with the histone cluster as a probe. The study of telomeres in the Myzus persicae strain with the X fission evidenced that telomerase synthesised de novo telomeres at the breakpoints resulting in the stabilization of the chromosomal fragments. Lastly, despite the presence of a conserved telomerase, aphid genome is devoid of genes coding for shelterin, a complex of proteins involved in telomere functioning frequently reported as conserved in eukaryotes. The absence of this complex, also confirmed in the genome of other arthropods, suggests that the shift in the sequence of the telomeric repeats has been accompanied by other changes in the telomere components in arthropods in respect to other metazoans. PMID:25610541

Comparisons of molecular karyotype and RAPD patterns of anuran trypanosome isolates during long-term in vitro cultivation.

PubMed

Lun, Z R; Desser, S S

1996-01-01

The patterns of random amplified fragments and molecular karyotypes of 12 isolates of anuran trypanosomes continuously cultured in vitro were compared by random amplified polymorphic DNA (RAPD) analysis and pulsed field gradient gel electrophoresis (PFGE). The time interval between preparation of two series of samples was one year. Changes were not observed in the number and size of sharp, amplified fragments of DNA samples from both series examined with the ten primers used. Likewise, changes in the molecular karyotypes were not detected between the two samples of these isolates. These results suggest that the molecular karyotype and the RAPD patterns of the anuran trypanosomes remain stable after being cultured continuously in vitro for one year.

Karyotype asymmetry in Cynodon Rich. (Poaceae) accessions.

PubMed

Chiavegatto, R B; Paula, C M P; Souza Sobrinho, F; Benites, F R G; Techio, V H

2016-12-02

Cynodon is a genus of plants with forage potential that has attracted the interest of breeders. These species have high morphological variability in a large number of varieties and cytotypes, hampering identification. This study aimed to determine the karyotype asymmetry index among accessions of Cynodon to discriminate between them. Karyotype symmetry was based on three estimates, which were compared. The basic number for the genus is x = 9. The results of the chromosome count and DNA quantification, respectively, were as follows: two diploid accessions (2n = 2x = 18 and 1.08 ± 0.094 to 1.17 ± 0.036 pg DNA and ± standard deviation), one triploid accession (2n = 3x = 27 and 1.63 ± 0.017 pg DNA), four tetraploid accessions (2n = 4x = 36 and 1.88 ± 0.069 to 2.10 ± 0.07 pg DNA), and one pentaploid accession (2n = 5x = 45 and 2.55 ± 0.098 pg DNA). C. incompletus var. hirsutus had the longest total length of the haploid lot (29.05 µm), with chromosomes that ranged from 1.7 to 6.2 µm in length. On the basis of the karyotype asymmetry indices, the accessions were divided into two groups: 1) C. dactylon var. dactylon, C. transvaalensis, C. dactylon var. polevansii, three accessions of Cynodon sp, and C. nlemfuensis; and 2) C. incompletus var. hirsutus. This is the first description of tetraploidy in C. transvaalensis. The karyotypic data facilitated a determination of the degree of proximity between the accessions.

Exploring Contemporary Issues in Genetics & Society: Karyotyping, Biological Sex, & Gender

ERIC Educational Resources Information Center

Brown, Julie C.

2013-01-01

In this two-part activity, high school biology students examine human karyotyping, sex-chromosome-linked disorders, and the relationship between biological sex and gender. Through interactive simulations and a structured discussion lab, students create a human karyotype and diagnose chromosomal disorders in hypothetical patients, as well as…

Karyotype variation in cultivars and spontaneous cocoa mutants (Theobroma cacao L.).

PubMed

Figueiredo, G S F; Melo, C A F; Souza, M M; Araújo, I S; Zaidan, H A; Pires, J L; Ahnert, D

2013-10-18

Four mutant cocoa accessions with morphological changes and a cultivar sample were karyomorphologically characterized. Slides were prepared by enzymatic digestion of the root meristem and squashed in 45% acetic acid, followed by 2% Giemsa staining. The chromosome number of 2n = 20 was seen in all accessions. The karyotype formula for Cacau Comum and Cacau Rui was 2n = 20m. Submetacentric chromosomes were observed in Cacau Pucala and Cacau Jaca, both with 2n = 18m + 2sm, but the karyotype formula for Cacau Sem Vidro was 2n = 16m + 4sm. Satellites were located on the long arm of the 1st and 2nd chromosome pairs of Cacau Comum, whereas Cacau Pucala had satellites on the 6th chromosome pair. Greater karyotypic variation in Cacau Sem Vidro was found, whose 1st and 2nd chromosome pairs had satellites on the long arm and 6th and 10th pairs had satellites on the short arm. Analysis revealed a lower average chromosome length in Cacau Comum (1.53 ± 0.026 µm) and a higher length in Cacau Sem Vidro (2.26 ± 0.038 µm). ANOVA revealed significant difference (P < 0.01) for the average chromosome length and the length of chromosome pairs within and between accessions. The average chromosome lengths of mutants of Cacau Rui and Cacau Jaca were not statistically different by the Tukey test at 5% probability. The karyotypic diversity observed in this study is not necessarily associated with the changing character of the accessions analyzed, but may reflect the genetic variation observed in Theobroma cacao.

A Reader-Response Analysis of "A Book from the Sky."

ERIC Educational Resources Information Center

Ma, Yan

This study applies reader-response criticism to investigate subject positions of gender, age, ethnicity, and profession through the poststructural analysis of an art work entitled "A Book from the Sky," and examines the relationship among viewer, text (the art work), and artist. A description of the art work is provided as an…

Noctilucent cloud particle size determination based on multi-wavelength all-sky analysis

NASA Astrophysics Data System (ADS)

Ugolnikov, Oleg S.; Galkin, Alexey A.; Pilgaev, Sergey V.; Roldugin, Alexey V.

2017-10-01

The article deals with the analysis of color distribution in noctilucent clouds (NLC) in the sky based on multi-wavelength (RGB) CCD-photometry provided with the all-sky camera in Lovozero in the north of Russia (68.0°N, 35.1°E) during the bright expanded NLC performance in the night of August 12, 2016. Small changes in the NLC color across the sky are interpreted as the atmospheric absorption and extinction effects combined with the difference in the Mie scattering functions of NLC particles for the three color channels of the camera. The method described in this paper is used to find the effective monodisperse radius of particles about 55 nm. The result of these simple and cost-effective measurements is in good agreement with previous estimations of comparable accuracy. Non-spherical particles, Gaussian and lognormal distribution of the particle size are also considered.

Google Sky: A Digital View of the Night Sky

NASA Astrophysics Data System (ADS)

Connolly, A. Scranton, R.; Ornduff, T.

2008-11-01

From its inception Astronomy has been a visual science, from careful observations of the sky using the naked eye, to the use of telescopes and photographs to map the distribution of stars and galaxies, to the current era of digital cameras that can image the sky over many decades of the electromagnetic spectrum. Sky in Google Earth (http://earth.google.com) and Google Sky (http://www.google.com/sky) continue this tradition, providing an intuitive visual interface to some of the largest astronomical imaging surveys of the sky. Streaming multi-color imagery, catalogs, time domain data, as well as annotating interesting astronomical sources and events with placemarks, podcasts and videos, Sky provides a panchromatic view of the universe accessible to anyone with a computer. Beyond a simple exploration of the sky Google Sky enables users to create and share content with others around the world. With an open interface available on Linux, Mac OS X and Windows, and translations of the content into over 20 different languages we present Sky as the embodiment of a virtual telescope for discovery and sharing the excitement of astronomy and science as a whole.

Karyotypic similarities between two species of Rhamphichthys (Rhamphichthyidae, Gymnotiformes) from the Amazon basin

PubMed Central

da Silva, Patrícia Corrêa; Nagamachi, Cleusa Yoshiko; Silva, Danillo dos Santos; Milhomem, Susana Suely Rodrigues; Cardoso, Adauto Lima; de Oliveira, Jonas Alves; Pieczarka, Julio Cesar

2013-01-01

Abstract The family Rhamphichthyidae includes three genera: Rhamphichthys Müller et Troschel, 1846, Gymnorhamphichthys M. M. Ellis, 1912 and Iracema Triques, 1996. From this family, only the species Rhamphichthys hanni Meinken, 1937 has had its karyotype described. Here, we describe the karyotypes of two additional Rhamphichthys species: Rhamphichthys marmoratus Castelnau, 1855 from the Reserva de Desenvolvimento Sustentável Mamirauá, Amazonas state and Rhamphichthys prope rostratus Linnaeus, 1766 from Pará state, both in Brazil. Our karyotypic analyses demonstrated that the diploid number is conserved for the genus (2n = 50), but the karyotypic formulas (KFs) differed between Rhamphichthys marmoratus (44m/sm+6a) and Rhamphichthys prope rostratus (42m/sm+8a). In both species, the constitutive heterochromatin (CH) was located in the centromeric region of most chromosomes. Large heterochromatic blocks were found on the long arms of pairs 4 and 14 in Rhamphichthys marmoratus and on chromosomes 3, 4 and 19 in Rhamphichthys prope rostratus, which also has a heteromorphism in chromosome pair 1. The CH was DAPI positive, indicating that it is rich in AT base pairs. The Nucleolus Organizer Region (NOR) showed staining at a single location in both species: the long arm of pair 1 in Rhamphichthys marmoratus and the long arm of pair 12 in Rhamphichthys prope rostratus, where it showed a size heteromorphism. CMA3 staining coincided with that of Ag-NOR, indicating that the ribosomal genes contain interspaced GC-rich sequences. FISH with an 18S rDNA probe confirmed that there is only one NOR site in each species. These results can be used as potential cytogenetic markers for fish populations, and comparative analysis of the karyotypes of Hypopygus Hoedman, 1962, Rhamphichthys and Steatogenys Boulenger, 1898 suggests that the first two genera diverged later that the third. PMID:24455102

Sex Determination, Sex Chromosomes, and Karyotype Evolution in Insects.

PubMed

Blackmon, Heath; Ross, Laura; Bachtrog, Doris

2017-01-01

Insects harbor a tremendous diversity of sex determining mechanisms both within and between groups. For example, in some orders such as Hymenoptera, all members are haplodiploid, whereas Diptera contain species with homomorphic as well as male and female heterogametic sex chromosome systems or paternal genome elimination. We have established a large database on karyotypes and sex chromosomes in insects, containing information on over 13000 species covering 29 orders of insects. This database constitutes a unique starting point to report phylogenetic patterns on the distribution of sex determination mechanisms, sex chromosomes, and karyotypes among insects and allows us to test general theories on the evolutionary dynamics of karyotypes, sex chromosomes, and sex determination systems in a comparative framework. Phylogenetic analysis reveals that male heterogamety is the ancestral mode of sex determination in insects, and transitions to female heterogamety are extremely rare. Many insect orders harbor species with complex sex chromosomes, and gains and losses of the sex-limited chromosome are frequent in some groups. Haplodiploidy originated several times within insects, and parthenogenesis is rare but evolves frequently. Providing a single source to electronically access data previously distributed among more than 500 articles and books will not only accelerate analyses of the assembled data, but also provide a unique resource to guide research on which taxa are likely to be informative to address specific questions, for example, for genome sequencing projects or large-scale comparative studies. © The American Genetic Association 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Amphibian and Avian Karyotype Evolution: Insights from Lampbrush Chromosome Studies

PubMed Central

Zlotina, Anna; Dedukh, Dmitry; Krasikova, Alla

2017-01-01

Amphibian and bird karyotypes typically have a complex organization, which makes them difficult for standard cytogenetic analysis. That is, amphibian chromosomes are generally large, enriched with repetitive elements, and characterized by the absence of informative banding patterns. The majority of avian karyotypes comprise a small number of relatively large macrochromosomes and numerous tiny morphologically undistinguishable microchromosomes. A good progress in investigation of amphibian and avian chromosome evolution became possible with the usage of giant lampbrush chromosomes typical for growing oocytes. Due to the giant size, peculiarities of organization and enrichment with cytological markers, lampbrush chromosomes can serve as an opportune model for comprehensive high-resolution cytogenetic and cytological investigations. Here, we review the main findings on chromosome evolution in amphibians and birds that were obtained using lampbrush chromosomes. In particular, we discuss the data on evolutionary chromosomal rearrangements, accumulation of polymorphisms, evolution of sex chromosomes as well as chromosomal changes during clonal reproduction of interspecies hybrids. PMID:29117127

The GRB All-sky Spectrometer Experiment II: Data Collection and Analysis

NASA Astrophysics Data System (ADS)

Voigt, Elana; Martinot, Zachary; Banks, Zachary; Pober, Jonathan; Morales, Miguel F.

2015-01-01

The GRB All-sky Spectrometer Experiment (GASE) is a widefield interferometer radio telescope designed to look for Gamma Ray Bursts in the 30 to 50 MHz range. It is based and operated as a wholly undergraduate experiment at the University of Washington. This poster will focus on data analysis and the relation of data analysis to the commissioning process of our 8 element GASE array.

Multipole Vector Anomalies in the First-Year WMAP Data: A Cut-Sky Analysis

NASA Astrophysics Data System (ADS)

Bielewicz, P.; Eriksen, H. K.; Banday, A. J.; Górski, K. M.; Lilje, P. B.

2005-12-01

We apply the recently defined multipole vector framework to the frequency-specific first-year WMAP sky maps, estimating the low-l multipole coefficients from the high-latitude sky by means of a power equalization filter. While most previous analyses of this type have considered only heavily processed (and foreground-contaminated) full-sky maps, the present approach allows for greater control of residual foregrounds and therefore potentially also for cosmologically important conclusions. The low-l spherical harmonic coefficients and corresponding multipole vectors are tabulated for easy reference. Using this formalism, we reassess a set of earlier claims of both cosmological and noncosmological low-l correlations on the basis of multipole vectors. First, we show that the apparent l=3 and 8 correlation claimed by Copi and coworkers is present only in the heavily processed map produced by Tegmark and coworkers and must therefore be considered an artifact of that map. Second, the well-known quadrupole-octopole correlation is confirmed at the 99% significance level and shown to be robust with respect to frequency and sky cut. Previous claims are thus supported by our analysis. Finally, the low-l alignment with respect to the ecliptic claimed by Schwarz and coworkers is nominally confirmed in this analysis, but also shown to be very dependent on severe a posteriori choices. Indeed, we show that given the peculiar quadrupole-octopole arrangement, finding such a strong alignment with the ecliptic is not unusual.

Chromosomal study of lettuce and its allied species (Lactuca spp., Asteraceae) by means of karyotype analysis and fluorescence in situ hybridization.

PubMed

Matoba, Hideyuki; Mizutani, Takayuki; Nagano, Katsuya; Hoshi, Yoshikazu; Uchiyama, Hiroshi

2007-12-01

In this study, in addition to the karyotype analysis, the chromosomal distributions of 5 S and 18 S rDNAs, and the Arabidopsis-type (T3AG3) telomeric sequences were detected by means of fluorescence in situ hybridization (FISH) to promote the information of chromosomal organization and evolution in the cultivated lettuce and its wild relatives, L. sativa, L. serriola, L. saligna and L. virosa. The karyotype analysis revealed the dissimilarity between L. virosa and the remaining species. In all four Lactuca species studied, one 5 S rDNA and two 18 S rDNA loci were detected. The simultaneous FISH of 5 S and 18 S rDNAs revealed that both rDNA loci of L. sativa, L. serriola and L. saligna were identical, however, that of L. virosa was different from the other species. These analyses indicate the closer relationships between L. sativa/L. serriola and L. saligna rather than L. virosa. Arabidopsis-type telomeric sequences were detected at both ends of their chromatids of all chromosomes not in the other regions. This observation suggests the lack of telomere-mediated chromosomal rearrangements among the Lactuca chromosomes.

A simplified model of all-sky artificial sky glow derived from VIIRS Day/Night band data

NASA Astrophysics Data System (ADS)

Duriscoe, Dan M.; Anderson, Sharolyn J.; Luginbuhl, Christian B.; Baugh, Kimberly E.

2018-07-01

We present a simplified method using geographic analysis tools to predict the average artificial luminance over the hemisphere of the night sky, expressed as a ratio to the natural condition. The VIIRS Day/Night Band upward radiance data from the Suomi NPP orbiting satellite was used for input to the model. The method is based upon a relation between sky glow brightness and the distance from the observer to the source of upward radiance. This relationship was developed using a Garstang radiative transfer model with Day/Night Band data as input, then refined and calibrated with ground-based all-sky V-band photometric data taken under cloudless and low atmospheric aerosol conditions. An excellent correlation was found between observed sky quality and the predicted values from the remotely sensed data. Thematic maps of large regions of the earth showing predicted artificial V-band sky brightness may be quickly generated with modest computing resources. We have found a fast and accurate method based on previous work to model all-sky quality. We provide limitations to this method. The proposed model meets requirements needed by decision makers and land managers of an easy to interpret and understand metric of sky quality.

Weather and atmosphere observation with the ATOM all-sky camera

NASA Astrophysics Data System (ADS)

Jankowsky, Felix; Wagner, Stefan

2015-03-01

The Automatic Telescope for Optical Monitoring (ATOM) for H.E.S.S. is an 75 cm optical telescope which operates fully automated. As there is no observer present during observation, an auxiliary all-sky camera serves as weather monitoring system. This device takes an all-sky image of the whole sky every three minutes. The gathered data then undergoes live-analysis by performing astrometric comparison with a theoretical night sky model, interpreting the absence of stars as cloud coverage. The sky monitor also serves as tool for a meteorological analysis of the observation site of the the upcoming Cherenkov Telescope Array. This overview covers design and benefits of the all-sky camera and additionally gives an introduction into current efforts to integrate the device into the atmosphere analysis programme of H.E.S.S.

Transformation of Sordaria macrospora to hygromycin B resistance: characterization of transformants by electrophoretic karyotyping and tetrad analysis.

PubMed

Walz, M; Kück, U

1995-12-01

The ascomycete Sordaria macrospora was transformed using different plasmid molecules containing the bacterial hygromycin B resistance gene (hph) under the control of different expression signals. The highest transformation frequency was obtained with vector pMW1. On this plasmid molecule, expression of the hph gene is directed by the upstream region of the isopenicillin N synthetase gene (pcbC) from the deuteromycete Acremonium chrysogenum. Southern analysis suggests that the vector copies are integrated as tandem repeats into the S. macrospora chromosomes and that duplicated sequences are most probably not inactivated by methylation during meiosis. Furthermore, the hygromycin B resistance (hygR) is not correlated with the number of integrated vector molecules. Electrophoretic karyotyping was used to further characterize S. macrospora transformants. Five chromosomal bands were separated by pulsed-field gel electrophoresis (PFGE) representing seven chromosomes with a total genome size of 39.5Mb. Hybridization analysis revealed ectopic integration of vector DNA into different chromosomes. In a few transformants, major rearrangements were detected. Transformants were sexually propagated to analyze the fate of the heterologous vector DNA. Although the hygR phenotype is stably maintained during mitosis, about a third of all lines tested showed loss of the resistance marker gene after meiosis. However, as was concluded from electrophoretic karyotyping, the resistant spores showed a Mendelian segregation of the integrated vector molecules in at least three consecutive generations. Our data indicate that heterologous marker genes can be used for transformation tagging, or the molecular mapping of chromosomal loci in S. macrospora.

Karyotypes of some medium-sized Dytiscidae (Agabinae and Colymbetinae) (Coleoptera)

PubMed Central

Angus, Robert B.; Clery, Molly J.; Carter, Jodie C.; Wenczek, Daniel E.

2013-01-01

Abstract An account is given of the karyotypes of 29 species of medium sized Dytiscidae (Coleoptera). Of the 20 species of Agabus Leach, 1817, 18 have karyotypes comprising 21 pairs of autosomes and sex chromosomes which are either X0(♂) or XX (♀). These species are Agabus serricornis (Paykull, 1799), Agabus labiatus (Brahm, 1791), Agabus congener (Thunberg, 1794), Agabus lapponicus (Thomson, 1867), Agabus thomsoni (J. Sahlberg, 1871), Agabus confinis (Gyllenhal, 1808), Agabus sturmii (Gyllenhal, 1808), Agabus bipustulatus (Linnaeus, 1767), Agabus nevadensis Håkan Lindberg, 1939, Agabus wollastoni Sharp, 1882, Agabus melanarius Aubé, 1837, Agabus biguttatus (Olivier, 1795), Agabus binotatus Aubé, 1837, Agabus affinis (Paykull, 1798), Agabus unguicularis (Thomson, 1867), Agabus ramblae Millan & Ribera, 2001, Agabus conspersus (Marsham, 1802) and Agabus nebulosus (Forster, 1771). However two species, Agabus infuscatus Aubé, 1838 and Agabus adpressus Aubé, 1837, have developed a neo-XY system, with karyotypes comprising 21 pairs of autosomes and XY sex chromosomes (♂). No chromosomal differences have been detected between typical Agabus bipustulatus and Agabus bipustulatus var. solieri Aubé, 1837, nor have any been found between the three species of the Agabus bipustulatus complex (Agabus bipustulatus, Agabus nevadensis and Agabus wollastoni). The four species of Colymbetes Clairville, 1806, Colymbetes fuscus (Linnaeus, 1758), Colymbetes paykulli Erichson, 1837, Colymbetes piceus Klug, 1834 and Colymbetes striatus (Linnaeus, 1758) have karyotypes comprising 20 pairs of autosomes and sex chromosomes which are X0 (♂), XX (♀). Two of the species of Rhantus Dejean, 1833, Rhantus exsoletus (Forster, 1771) and Rhantus suturellus (Harris, 1828) have karyotypes comprising 20 pairs of autosomes and X0/XX sex chromosomes, but the other three species, Rhantus grapii (Gyllenhal, 1808), Rhantus frontalis (Marsham, 1802) and Rhantus suturalis (Macleay, 1825) have 22

yourSky: Custom Sky-Image Mosaics via the Internet

NASA Technical Reports Server (NTRS)

Jacob, Joseph

2003-01-01

yourSky (http://yourSky.jpl.nasa.gov) is a computer program that supplies custom astronomical image mosaics of sky regions specified by requesters using client computers connected to the Internet. [yourSky is an upgraded version of the software reported in Software for Generating Mosaics of Astronomical Images (NPO-21121), NASA Tech Briefs, Vol. 25, No. 4 (April 2001), page 16a.] A requester no longer has to engage in the tedious process of determining what subset of images is needed, nor even to know how the images are indexed in image archives. Instead, in response to a requester s specification of the size and location of the sky area, (and optionally of the desired set and type of data, resolution, coordinate system, projection, and image format), yourSky automatically retrieves the component image data from archives totaling tens of terabytes stored on computer tape and disk drives at multiple sites and assembles the component images into a mosaic image by use of a high-performance parallel code. yourSky runs on the server computer where the mosaics are assembled. Because yourSky includes a Web-interface component, no special client software is needed: ordinary Web browser software is sufficient.

Fragment length analysis screening for detection of CEBPA mutations in intermediate-risk karyotype acute myeloid leukemia.

PubMed

Fuster, Oscar; Barragán, Eva; Bolufer, Pascual; Such, Esperanza; Valencia, Ana; Ibáñez, Mariam; Dolz, Sandra; de Juan, Inmaculada; Jiménez, Antonio; Gómez, Maria Teresa; Buño, Ismael; Martínez, Joaquín; Cervera, José; Montesinos, Pau; Moscardó, Federico; Sanz, Miguel Ángel

2012-01-01

During last years, molecular markers have been increased as prognostic factors routinely screened in acute myeloid leukemia (AML). Recently, an increasing interest has been reported in introducing to clinical practice screening for mutations in the CCAAT/enhancer-binding protein α (CEBPA) gene in AML, as it seems to be a good prognostic factor. However, there is no reliable established method for assessing CEBPA mutations during the diagnostic work-up of AMLs. We describe here a straightforward and reliable fragment analysis method based in PCR capillary electrophoresis (PCR-CE) for screening of CEBPA mutations; moreover, we present the results obtained in 151 intermediate-risk karyotype AML patients (aged 16-80 years). The method gave a specificity of 100% and sensitivity of 93% with a lower detection limit of 1-5% for CEBPA mutations. The series found 19 mutations and four polymorphisms in 12 patients, seven of whom (58%) presented two mutations. The overall frequency of CEBPA mutations in AML was 8% (n = 12). CEBPA mutations showed no coincidence with FLT3-ITD or NPM1 mutations. CEBPA mutation predicted better disease-free survival in the group of patients without FLT3-ITD, NPM, or both genes mutated (HR 3.6, IC 95%; 1.0-13.2, p = 0.05) and better overall survival in patients younger than 65 of this group without molecular markers (HR 4.0, IC 95%; 1.0-17.4, p = 0.05). In conclusion, the fragment analysis method based in PCR-CE is a rapid, specific, and sensitive method for CEBPA mutation screening and our results confirm that CEBPA mutations can identify a subgroup of patients with favorable prognosis in AML with intermediate-risk karyotype.

CD19-positive acute myeloblastic leukemia with trisomy 21 as a sole acquired karyotypic abnormality

PubMed Central

Wang, Hua-feng; Cheng, Yi-zhi; Wang, Huan-ping; Chen, Zhi-mei; Lou, Ji-yu; Jin, Jie

2009-01-01

We report that a 63-year-old Chinese female had acute myeloblastic leukemia (AML) in which trisomy 21 (+21) was found as the sole acquired karyotypic abnormality. The blasts were positive for myeloperoxidase, and the immunophenotype was positive for cluster of differentiation 19 (CD19), CD33, CD34, and human leukocyte antigens (HLA)-DR. The chromosomal analysis of bone marrow showed 47,XX,+21[2]/46,XX[18]. Fluorescent in situ hybridization (FISH) showed that three copies of AML1 were situated in separate chromosomes, and that t(8;21) was negative. The patient did not have any features of Down syndrome. A diagnosis of CD19-positive AML-M5 was established with trisomy 21 as a sole acquired karyotypic abnormality. The patient did not respond well to chemotherapy and died three months after the diagnosis. This is the first reported case of CD19-positive AML with trisomy 21 as the sole cytogenetic abnormality. The possible prognostic significance of the finding in AML with +21 as the sole acquired karyotypic abnormality was discussed. PMID:19882758

Gamma-sky.net: Portal to the gamma-ray sky

NASA Astrophysics Data System (ADS)

Voruganti, Arjun; Deil, Christoph; Donath, Axel; King, Johannes

2017-01-01

http://gamma-sky.net is a novel interactive website designed for exploring the gamma-ray sky. The Map View portion of the site is powered by the Aladin Lite sky atlas, providing a scalable survey image tesselated onto a three-dimensional sphere. The map allows for interactive pan and zoom navigation as well as search queries by sky position or object name. The default image overlay shows the gamma-ray sky observed by the Fermi-LAT gamma-ray space telescope. Other survey images (e.g. Planck microwave images in low/high frequency bands, ROSAT X-ray image) are available for comparison with the gamma-ray data. Sources from major gamma-ray source catalogs of interest (Fermi-LAT 2FHL, 3FGL and a TeV source catalog) are overlaid over the sky map as markers. Clicking on a given source shows basic information in a popup, and detailed pages for every source are available via the Catalog View component of the website, including information such as source classification, spectrum and light-curve plots, and literature references. We intend for gamma-sky.net to be applicable for both professional astronomers as well as the general public. The website started in early June 2016 and is being developed as an open-source, open data project on GitHub (https://github.com/gammapy/gamma-sky). We plan to extend it to display more gamma-ray and multi-wavelength data. Feedback and contributions are very welcome!

Karyotypes versus Genomes: The Nymphalid Butterflies Melitaea cinxia, Danaus plexippus, and D. chrysippus.

PubMed

Traut, Walther; Ahola, Virpi; Smith, David A S; Gordon, Ian J; Ffrench-Constant, Richard H

2017-01-01

The number of sequenced lepidopteran genomes is increasing rapidly. However, the corresponding assemblies rarely represent whole chromosomes and generally also lack the highly repetitive W sex chromosome. Knowledge of the karyotypes can facilitate genome assembly and further our understanding of sex chromosome evolution in Lepidoptera. Here, we describe the karyotypes of the Glanville fritillary Melitaea cinxia (n = 31), the monarch Danaus plexippus (n = 30), and the African queen D. chrysippus (2n = 60 or 59, depending on the source population). We show by FISH that the telomeres are of the (TTAGG)n type, as found in most insects. M. cinxia and D. plexippus have "conventional" W chromosomes which are heterochromatic in meiotic and somatic cells. In D. chrysippus, the W is inconspicuous. Neither telomeres nor W chromosomes are represented in the published genomes of M. cinxia and D. plexippus. Representation analysis in sequenced female and male D. chrysippus genomes detected an evolutionarily old autosome-Z chromosome fusion in Danaus. Conserved synteny of whole chromosomes, so called "macro synteny", in Lepidoptera permitted us to identify the chromosomes involved in this fusion. An additional and more recent sex chromosome fusion was found in D. chrysippus by karyotype analysis and classical genetics. In a hybrid population between 2 subspecies, D. c. chrysippus and D. c. dorippus, the W chromosome was fused to an autosome that carries a wing colour locus. Thus, cytogenetics and the present state of genome data complement one another to reveal the evolutionary history of the species. © 2017 S. Karger AG, Basel.

A chromosome painting test of the basal eutherian karyotype.

PubMed

Svartman, Marta; Stone, Gary; Page, John E; Stanyon, Roscoe

2004-01-01

We studied the chromosomes of an Afrotherian species, the short-eared elephant shrew Macroscelides proboscideus with traditional banding techniques and mapped the homology to human chromosomes by in-situ hybridization of human chromosome paints. Here we present for the first time the karyotype of this species, including banding patterns. The chromosome painting allowed us to test various hypotheses of the ancestral Eutherian karyotype, the validity of the radical taxonomic assemblage known as Afrotheria and the phylogenetic position of the elephant shrew within the Afrotheria. Current hypotheses concerning the Eutherian ancestral karyotype include diploid numbers ranging from 2n = 44 to 50 while molecular studies have proposed a new superordinal grouping of extant Eutherians. In particular, the Afrotheria is hotly debated, as it appears to be an odd mixture of species from Ungulata, Tubulidentata, Macroscelidea and Lipotyphla, which have no apparent morphological traits to unite them. The hybridization pattern delimited a total of 37 segments in the elephant shrew genome and revealed 21 different associations of human chromosome segments. Associations 1/19 and 5/21 link all Afrotheria so far studied and support the Afrotheria assemblage. Associations 2/8, 3/20, and 10/17 strongly link aardvarks and elephant shrews after the divergence of the line leading to elephants. The most likely ancestral Eutherian karyotype would be 2n = 48 chromosomes. However, the lack of comparative chromosome painting data between Eutherians and an appropriate outgroup is a severe limitation on attempts to delineate the ancestral genome of Eutherians. Current attempts lack legitimacy until this situation is corrected.

Acute monocytic leukemia and multiple abnormalities in a child with duplication of 1q detected by GTG-banding and SKY.

PubMed

Scrideli, Carlos A; Baruffi, Marcelo R; Squire, Jeremy A; Ramos, Ester S; Karaskova, Jana; Heck, Benjamin; Tone, Luiz G

2005-12-01

Patients with 1q duplication have demonstrated a wide range of multiple congenital abnormalities. Alterations involving this chromosomal region have being described in hematopoietic malignancies and a series of candidate genes that may be associated with neoplasias have been mapped in this region. We describe a case of partial trisomy 1q "syndrome" and acute monocytic leukemia. Cytogenetic study of the bone marrow cells by GTG-banding and spectral karyotyping (SKY) showed dup(1)(q23q44) in all cells analyzed. The dismorphological features with the dup(1q) suggest a constitutional chromosome alteration and the first, in our knowledge, association of a trisomy 1q "syndrome" with AML.

Evaluating the spatio-temporal performance of sky-imager-based solar irradiance analysis and forecasts

NASA Astrophysics Data System (ADS)

Schmidt, Thomas; Kalisch, John; Lorenz, Elke; Heinemann, Detlev

2016-03-01

Clouds are the dominant source of small-scale variability in surface solar radiation and uncertainty in its prediction. However, the increasing share of solar energy in the worldwide electric power supply increases the need for accurate solar radiation forecasts. In this work, we present results of a very short term global horizontal irradiance (GHI) forecast experiment based on hemispheric sky images. A 2-month data set with images from one sky imager and high-resolution GHI measurements from 99 pyranometers distributed over 10 km by 12 km is used for validation. We developed a multi-step model and processed GHI forecasts up to 25 min with an update interval of 15 s. A cloud type classification is used to separate the time series into different cloud scenarios. Overall, the sky-imager-based forecasts do not outperform the reference persistence forecasts. Nevertheless, we find that analysis and forecast performance depends strongly on the predominant cloud conditions. Especially convective type clouds lead to high temporal and spatial GHI variability. For cumulus cloud conditions, the analysis error is found to be lower than that introduced by a single pyranometer if it is used representatively for the whole area in distances from the camera larger than 1-2 km. Moreover, forecast skill is much higher for these conditions compared to overcast or clear sky situations causing low GHI variability, which is easier to predict by persistence. In order to generalize the cloud-induced forecast error, we identify a variability threshold indicating conditions with positive forecast skill.

Evaluating the spatio-temporal performance of sky imager based solar irradiance analysis and forecasts

NASA Astrophysics Data System (ADS)

Schmidt, T.; Kalisch, J.; Lorenz, E.; Heinemann, D.

2015-10-01

Clouds are the dominant source of variability in surface solar radiation and uncertainty in its prediction. However, the increasing share of solar energy in the world-wide electric power supply increases the need for accurate solar radiation forecasts. In this work, we present results of a shortest-term global horizontal irradiance (GHI) forecast experiment based on hemispheric sky images. A two month dataset with images from one sky imager and high resolutive GHI measurements from 99 pyranometers distributed over 10 km by 12 km is used for validation. We developed a multi-step model and processed GHI forecasts up to 25 min with an update interval of 15 s. A cloud type classification is used to separate the time series in different cloud scenarios. Overall, the sky imager based forecasts do not outperform the reference persistence forecasts. Nevertheless, we find that analysis and forecast performance depend strongly on the predominant cloud conditions. Especially convective type clouds lead to high temporal and spatial GHI variability. For cumulus cloud conditions, the analysis error is found to be lower than that introduced by a single pyranometer if it is used representatively for the whole area in distances from the camera larger than 1-2 km. Moreover, forecast skill is much higher for these conditions compared to overcast or clear sky situations causing low GHI variability which is easier to predict by persistence. In order to generalize the cloud-induced forecast error, we identify a variability threshold indicating conditions with positive forecast skill.

A Rare Case of Klinefelter Syndrome Patient with Quintuple Mosaic Karyotype, Diagnosed by GTG-Banding and FISH

PubMed Central

Karimi, Hamideh; Sabbaghian, Marjan; Haratian, Kaveh; Vaziri Nasab, Hamed; Farrahi, Faramarz; Moradi, Shabnam Zari; Tavakolzadeh, Tayebeh; Beheshti, Zahra; Gourabi, Hamid; Meybodi, Anahita Mohseni

2014-01-01

Klinefelter syndrome (KS) is the most common sex chromosomal disorder in men. Most of these patients show the 47,XXY karyotype, whereas approximately 15% of them are mosaics with variable phenotype. A 39-year-old male investigated for primary infertility, was clinically normal with small firm testes and elevated levels of FSH, LH and low level of testosterone. Total azoospermia was confirmed on semen analysis. Testicular histopathology revealed no spermatogenesis and absence of germ cells. Karyotype from whole blood culture showed cells with 47,XXY/46,XX/ 45,X/48,XXXY/ 46,XY mosaicism. The predominant cell line was 47,XXY (83.67%). This was confirmed by fluorescence in situ hybridization (FISH). Also the presence of a small population of cells with the 48,XXXY and 45,X karyotypes was detected by FISH. This case illustrates the utility of FISH as an adjunct to conventional cytogenetics in assess the chromosome copy number in each cell line of a mosaic. PMID:25083188

A Rare Case of Klinefelter Syndrome Patient with Quintuple Mosaic Karyotype, Diagnosed by GTG-Banding and FISH.

PubMed

Karimi, Hamideh; Sabbaghian, Marjan; Haratian, Kaveh; Vaziri Nasab, Hamed; Farrahi, Faramarz; Moradi, Shabnam Zari; Tavakolzadeh, Tayebeh; Beheshti, Zahra; Gourabi, Hamid; Meybodi, Anahita Mohseni

2014-07-01

Klinefelter syndrome (KS) is the most common sex chromosomal disorder in men. Most of these patients show the 47,XXY karyotype, whereas approximately 15% of them are mosaics with variable phenotype. A 39-year-old male investigated for primary infertility, was clinically normal with small firm testes and elevated levels of FSH, LH and low level of testosterone. Total azoospermia was confirmed on semen analysis. Testicular histopathology revealed no spermatogenesis and absence of germ cells. Karyotype from whole blood culture showed cells with 47,XXY/46,XX/ 45,X/48,XXXY/ 46,XY mosaicism. The predominant cell line was 47,XXY (83.67%). This was confirmed by fluorescence in situ hybridization (FISH). Also the presence of a small population of cells with the 48,XXXY and 45,X karyotypes was detected by FISH. This case illustrates the utility of FISH as an adjunct to conventional cytogenetics in assess the chromosome copy number in each cell line of a mosaic.

Holokinetic centromeres and efficient telomere healing enable rapid karyotype evolution.

PubMed

Jankowska, Maja; Fuchs, Jörg; Klocke, Evelyn; Fojtová, Miloslava; Polanská, Pavla; Fajkus, Jiří; Schubert, Veit; Houben, Andreas

2015-12-01

Species with holocentric chromosomes are often characterized by a rapid karyotype evolution. In contrast to species with monocentric chromosomes where acentric fragments are lost during cell division, breakage of holocentric chromosomes creates fragments with normal centromere activity. To decipher the mechanism that allows holocentric species an accelerated karyotype evolution via chromosome breakage, we analyzed the chromosome complements of irradiated Luzula elegans plants. The resulting chromosomal fragments and rearranged chromosomes revealed holocentromere-typical CENH3 and histone H2AThr120ph signals as well as the same mitotic mobility like unfragmented chromosomes. Newly synthesized telomeres at break points become detectable 3 weeks after irradiation. The presence of active telomerase suggests a telomerase-based mechanism of chromosome healing. A successful transmission of holocentric chromosome fragments across different generations was found for most offspring of irradiated plants. Hence, a combination of holokinetic centromere activity and the fast formation of new telomeres at break points enables holocentric species a rapid karyotype evolution involving chromosome fissions and rearrangements.

Immunostimulation by cytosine-phosphate-guanine oligodeoxynucleotides in combination with IL-2 can improve the success rate of karyotype analysis in chronic lymphocytic leukaemia.

PubMed

Lin, Xiaolan; Chen, Jiadi; Huang, Huifang

2016-07-01

To assess whether immunostimulatory cytosine-phosphate-guanine oligodeoxynucleotides (CpG-ODN) combined with interleukin-2 (IL-2) improves the number of mitotic metaphases and the detection rate of chromosomal abnormalities in chronic lymphocytic leukaemia (CLL). Bone marrow specimens were collected from 36 patients with CLL. CLL cells were cultured with CpG-ODN type DSP30 plus IL-2 for 72 h, following which R-banding analysis was conducted. Conventional culture without the immunostimulant served as the control group. The incidence of genetic abnormalities was measured by fluorescence in situ hybridisation (FISH) using a panel of five specific probes: D13S25 (13q14.3), RB1 (13q14), P53 (17p13), ATM (11q22.3) and CSP12 (trisomy 12, +12). In the control group, chromosome analysis achieved a success rate of only 22.2, and 11.1% of abnormal karyotypes were detected. After immunostimulation with DSP30 plus IL-2, chromosome analysis achieved a success rate of up to 91.6, and 41.6% of abnormal karyotypes were detected. FISH analysis detected 77.7% of abnormalities. FISH combined with CpG-ODN DSP30 plus IL-2 improved the detection rate of chromosomal abnormalities in CLL to 83.3%. CpG-ODN DSP30 combined with IL-2 is effective in improving the detection rate of chromosomal abnormalities in CLL cells. This combination with FISH analysis is conducive to increasing the detection rate of genetic abnormalities in CLL.

Digital all-sky polarization imaging of partly cloudy skies.

PubMed

Pust, Nathan J; Shaw, Joseph A

2008-12-01

Clouds reduce the degree of linear polarization (DOLP) of skylight relative to that of a clear sky. Even thin subvisual clouds in the "twilight zone" between clouds and aerosols produce a drop in skylight DOLP long before clouds become visible in the sky. In contrast, the angle of polarization (AOP) of light scattered by a cloud in a partly cloudy sky remains the same as in the clear sky for most cases. In unique instances, though, select clouds display AOP signatures that are oriented 90 degrees from the clear-sky AOP. For these clouds, scattered light oriented parallel to the scattering plane dominates the perpendicularly polarized Rayleigh-scattered light between the instrument and the cloud. For liquid clouds, this effect may assist cloud particle size identification because it occurs only over a relatively limited range of particle radii that will scatter parallel polarized light. Images are shown from a digital all-sky-polarization imager to illustrate these effects. Images are also shown that provide validation of previously published theories for weak (approximately 2%) polarization parallel to the scattering plane for a 22 degrees halo.

[CpG-oligodeoxynucleotide stimulation improves the success for karyotypic analysis of chronic lymphocytic leukemia cells].

PubMed

Liu, Qiong; Xu, Wei; Qiu, Hai-rong; Wang, Rong; Yu, Hui; Fan, Lei; Miao, Kou-rong; Li, Jian-yong

2009-09-01

To explore the effect of CpG-oligodeoxynucleotides (ODN) in chromosome study of chronic lymphocytic leukemia (CLL). Blood or bone marrow cells of 70 CLL patients were cultured for 72 h with PHA, CpG-ODN and CpG-ODN combined with IL-2, respectively. Routine karyotype analysis with R banding technique and interphase fluorescence in situ hybridization (FISH) were performed. The metaphase number>or=20 was considered as successful stimulation, which in PHA, CpG-ODN and CpG-ODN combined IL-2 groups were 90.0%, 68.6% and 68.6%, respectively, and the detection rates of chromosome aberrations were 3.2%, 43.6% and 43.6%, respectively. The aberrations rates detected by interphase FISH with a panel of probes was 64.3%. CpG-ODN DSP30 can effectively raise the detection rate of chromosome aberrations in CLL patients.

A Fluorescence in Situ Hybridization System for Karyotyping Soybean

PubMed Central

Findley, Seth D.; Cannon, Steven; Varala, Kranthi; Du, Jianchang; Ma, Jianxin; Hudson, Matthew E.; Birchler, James A.; Stacey, Gary

2010-01-01

The development of a universal soybean (Glycine max [L.] Merr.) cytogenetic map that associates classical genetic linkage groups, molecular linkage groups, and a sequence-based physical map with the karyotype has been impeded due to the soybean chromosomes themselves, which are small and morphologically homogeneous. To overcome this obstacle, we screened soybean repetitive DNA to develop a cocktail of fluorescent in situ hybridization (FISH) probes that could differentially label mitotic chromosomes in root tip preparations. We used genetically anchored BAC clones both to identify individual chromosomes in metaphase spreads and to complete a FISH-based karyotyping cocktail that permitted simultaneous identification of all 20 chromosome pairs. We applied these karyotyping tools to wild soybean, G. soja Sieb. and Zucc., which represents a large gene pool of potentially agronomically valuable traits. These studies led to the identification and characterization of a reciprocal chromosome translocation between chromosomes 11 and 13 in two accessions of wild soybean. The data confirm that this translocation is widespread in G. soja accessions and likely accounts for the semi-sterility found in some G. soja by G. max crosses. PMID:20421607

[Comparative chromosome painting shows the red panda (Ailurus fulgens) has a highly conserved karyotype].

PubMed

Tian, Ying; Nie, Wen-Hui; Wang, Jin-Huan; Yang, Yun-Fei; Yang, Feng-Tang

2002-02-01

We have established a comparative chromosome map between red panda (Ailurus fulgens, 2n = 36) and dog by chromosome painting with biotin-labelled chromosome-specific probes of the dog. Dog probes specific for the 38 automates delineated 71 homologous segments in the metaphase chromosomes of red panda. Of the 38 autosomal paints, 18 probes each delineated one homologous segment in red panda genome, while the other 20 ones each detected two to five homologous segments. The dog X chromosome-specific paint delineated the whole X chromosome of the red panda. The results indicate that at least 28 fissions (breaks), 49 fusions and 4 inversions were needed to "convert" the dog karyotype to that of the red panda, suggesting that extensive chromosome rearrangements differentiate the karyotypes of red panda and dog. Based on the established comparative chromosome homologies of dog and domestic cat, we could infer that there were 26 segments of conserved synteny between red panda and domestic cat. Comparative analysis of the distribution patterns of conserved segments defined by dog paints in red panda and domestic cat genomes revealed at least 2 cryptic inversions in two large chromosomal regions of conserved synteny between red panda and domestic cat. The karyotype of red panda shows high degree of homology with that of domestic cat.

Dark Skies as a Universal Resource: Citizen Scientists Measuring Sky Brightness

NASA Astrophysics Data System (ADS)

Walker, C. E.; Isbell, D.; Pompea, S. M.

2007-12-01

The international star-hunting event known as GLOBE at Night returned March 8-21, 2007 in two flavors: the classic GLOBE at Night activity incorporating unaided-eye observations which debuted last year, and a new effort to obtain precise measurements of urban dark skies using digital sky-brightness meters. Both flavors of the program were designed to aid in heightening the awareness about the impact of artificial lighting on local environments, and the ongoing loss of a dark night sky as a natural resource for much of the world's population. To make possible the digital GLOBE at Night program, NSF funded 135 low-cost, digital sky-quality meter (manufactured by Unihedron). With these, citizen-scientists took direct measurements of the integrated sky brightness across a wide swath of night sky. Along with related materials developed by the National Optical Astronomy Observatory (NOAO), the meters were distributed to citizen-scientists in 21 U.S. states plus Washington DC, and in 5 other countries, including Chile, where NOAO has a major observatory. The citizen- scientists were selected from teachers, their students, astronomers at mountain-top observatories, International Dark-Sky Association members and staff from 19 small science centers. Most sites had a coordinator, who instructed local educators in the proper use of the meters and develop a plan to share them as widely as possible during the 2-week window. The local teams pooled their data for regional analysis and in some cases shared the results with their schools and local policymakers. Building upon the worldwide participation sparked by the first GLOBE at Night campaign in March 2006, the observations this year approached 8500 (from 60 countries), 85% higher than the number from last year. The success of GLOBE at Night 2007 is a major step toward the International Year of Astronomy in 2009, when one goal is to make the digital data collection into a worldwide activity. In this presentation, we will outline

Insights into the karyotype evolution and speciation of the beetle Euchroma gigantea (Coleoptera: Buprestidae).

PubMed

Xavier, Crislaine; Soares, Rógean Vinícius Santos; Amorim, Igor Costa; Cabral-de-Mello, Diogo Cavalcanti; de Cássia de Moura, Rita

2018-03-09

Euchroma Dejean, 1833 (Buprestidae: Coleoptera) is a monotypic genus comprising the species Euchroma gigantea, with populations presenting a degree of karyotypic variation/polymorphism rarely found within a single taxonomic (specific) unit, as well as drastically incompatible meiotic configurations in populations from extremes of the species range. To better understand the complex karyotypic evolution of E. gigantea, the karyotypes of specimens from five populations in Brazil were investigated using molecular cytogenetics and phylogenetic approaches. Herein, we used FISH with histone genes as well as sequencing of the COI to determine differential distribution of markers and relationships among populations. The analyses revealed new karyotypes, with variability for chromosome number and morphology of multiple sex chromosome mechanisms, occurrence of B chromosome variants (punctiform and large ones), and high dispersion of histone genes in different karyotypes. These data indicate that chromosomal polymorphism in E. gigantea is greater than previously reported, and that the species can be a valuable model for cytogenetic studies. The COI phylogenetic and haplotype analyses highlighted the formation of three groups with chromosomally polymorphic individuals. Finally, we compared the different karyotypes and proposed a model for the chromosomal evolution of this species. The species E. gigantea includes at least three cytogenetically polymorphic lineages. Moreover, in each of these lineages, different chromosomal rearrangements have been fixed. Dispersion of repetitive sequences may have favored the high frequency of these rearrangements, which could be related to both adaptation of the species to different habitats and the speciation process.

Evaluation of Clear Sky Models for Satellite-Based Irradiance Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sengupta, Manajit; Gotseff, Peter

2013-12-01

This report describes an intercomparison of three popular broadband clear sky solar irradiance model results with measured data, as well as satellite-based model clear sky results compared to measured clear sky data. The authors conclude that one of the popular clear sky models (the Bird clear sky model developed by Richard Bird and Roland Hulstrom) could serve as a more accurate replacement for current satellite-model clear sky estimations. Additionally, the analysis of the model results with respect to model input parameters indicates that rather than climatological, annual, or monthly mean input data, higher-time-resolution input parameters improve the general clear skymore » model performance.« less

The Infrared Astronomical Satellite /IRAS/ Scientific Data Analysis System /SDAS/ sky flux subsystem

NASA Technical Reports Server (NTRS)

Stagner, J. R.; Girard, M. A.

1980-01-01

The sky flux subsystem of the Infrared Astronomical Satellite Scientific Data Analysis System is described. Its major output capabilities are (1) the all-sky lune maps (8-arcminute pixel size), (2) galactic plane maps (2-arcminute pixel size) and (3) regional maps of small areas such as extended sources greater than 1-degree in extent. The major processing functions are to (1) merge the CRDD and pointing data, (2) phase the detector streams, (3) compress the detector streams in the in-scan and cross-scan directions, and (4) extract data. Functional diagrams of the various capabilities of the subsystem are given. Although this device is inherently nonimaging, various calibrated and geometrically controlled imaging products are created, suitable for quantitative and qualitative scientific interpretation.

Sun and Sky Radiance Measurements and Data Analysis Protocols. Chapter 5

NASA Technical Reports Server (NTRS)

Frouin, Robert; Holben, Brent; Miller, Mark; Pietras, Christophe; Porter, John; Voss, Ken

2001-01-01

This chapter is concerned with two types of radiometric measurements essential to verify atmospheric correction algorithms and to calibrate vicariously satellite ocean color sensors. The first type is a photometric measurement of the direct solar beam to determine the optical thickness of the atmosphere. The intensity of the solar beam can be measured directly, or obtained indirectly from measurements of diffuse global upper hemispheric irradiance. The second type is a measurement of the solar aureole and sky radiance distribution using a CCD camera, or a scanning radiometer viewing in and perpendicular to the solar principal plane. From the two types of measurements, the optical properties of aerosols, highly variable in space and time, can be derived. Because of the high variability, the aerosol properties should be known at the time of satellite overpass. Atmospheric optics measurements, however, are not easy to perform at sea, from a ship or any platform. This complicates the measurement protocols and data analysis. Some instrumentation cannot be deployed at sea, and is limited to island and coastal sites. In the following, measurement protocols are described for radiometers commonly used to measure direct atmospheric transmittance and sky radiance, namely standard sun photometers, fast-rotating shadow-band radiometers, automated sky scanning systems, and CCD cameras. Methods and procedures to analyze and quality control the data are discussed, as well as proper measurement strategies for evaluation of atmospheric correction algorithms and satellite-derived ocean color.

Dark Sky Protection and Education - Izera Dark Sky Park

NASA Astrophysics Data System (ADS)

Berlicki, Arkadiusz; Kolomanski, Sylwester; Mrozek, Tomasz; Zakowicz, Grzegorz

2015-08-01

Darkness of the night sky is a natural component of our environment and should be protected against negative effects of human activities. The night darkness is necessary for balanced life of plants, animals and people. Unfortunately, development of human civilization and technology has led to the substantial increase of the night-sky brightness and to situation where nights are no more dark in many areas of the World. This phenomenon is called "light pollution" and it can be rank among such problems as chemical pollution of air, water and soil. Besides the environment, the light pollution can also affect e.g. the scientific activities of astronomers - many observatories built in the past began to be located within the glow of city lights making the night observations difficult, or even impossible.In order to protect the natural darkness of nights many so-called "dark sky parks" were established, where the darkness is preserved, similar to typical nature reserves. The role of these parks is not only conservation but also education, supporting to make society aware of how serious the problem of the light pollution is.History of the dark sky areas in Europe began on November 4, 2009 in Jizerka - a small village situated in the Izera Mountains, when Izera Dark Sky Park (IDSP) was established - it was the first transboundary dark sky park in the World. The idea of establishing that dark sky park in the Izera Mountains originated from a need to give to the society in Poland and Czech Republic the knowledge about the light pollution. Izera Dark Sky Park is a part of the astro-tourism project "Astro Izery" that combines tourist attraction of Izera Valley and astronomical education under the wonderful starry Izera sky. Besides the IDSP, the project Astro Izery consists of the set of simple astronomical instruments (gnomon, sundial), natural educational trail "Solar System Model", and astronomical events for the public. In addition, twice a year we organize a 3-4 days

Dedicated cytogenetics factor is critical for improving karyotyping results for childhood leukaemias - experience in the National University Hospital, Singapore 1989-2006.

PubMed

Heng, J L; Chen, Y C; Quah, T C; Liu, T C; Yeoh, A E J

2010-02-01

Childhood leukaemia accounts for more than 40% of new childhood cancer cases. Karyotyping of cytogenetic abnormalities in such cases continues to provide critical prognostic information which allows the delivery of an appropriate intensity of treatment. Unfortunately, karyotyping of childhood leukaemia is difficult, laborious and often unsuccessful. Banding resolution tends to be poor unlike routine antenatal cytogenetics. The aim of the study is to highlight the benefit of dedicated cytogenetics in improving karyotyping results. We analysed the impact of setting up a team of cytogeneticists in the National University Hospital (NUH) on the success of karyotyping, evaluating cytogenetic data collected from 1989 to 2006. From 1989 to 2006, 4789 cases have been processed. Among them, 369 newly diagnosed and relapsed childhood acute leukaemia cases [281 acute lymphoblastic leukaemia (ALL) and 88 acute myeloid leukaemia (AML)] have been diagnosed at NUH. A dedicated cytogenetics laboratory with clearly defined standard operating procedures and quality control was set up in 2002. It used the established recommendation of a complete analysis of at least 20 metaphases per analysis. Overall, the frequency of successful karyotyping was significantly higher (P = 0.002) at 90.7% (185/204) from 2002-2006 compared to 79.4% (131/165) from 1989-2001. For ALL cases, the success rate improved from 77.6% (97/125) in 1989 to 2001 to 89.1% (139/156) in the 2002 to 2006 cohort. For AML, the success rate also was significantly improved (P = 0.04) from 85% (34/40) to 95.8% (46/48). Significantly, this high rate of success is still maintained despite a yearly increase in volume. The establishment of a dedicated cytogenetics service leads to an improvement in results.

Phenotypes and Karyotypes of Human Malignant Mesothelioma Cell Lines

PubMed Central

Relan, Vandana; Morrison, Leanne; Parsonson, Kylie; Clarke, Belinda E.; Duhig, Edwina E.; Windsor, Morgan N.; Matar, Kevin S.; Naidoo, Rishendran; Passmore, Linda; McCaul, Elizabeth; Courtney, Deborah; Yang, Ian A.; Fong, Kwun M.; Bowman, Rayleen V.

2013-01-01

Background Malignant mesothelioma is an aggressive tumour of serosal surfaces most commonly pleura. Characterised cell lines represent a valuable tool to study the biology of mesothelioma. The aim of this study was to develop and biologically characterise six malignant mesothelioma cell lines to evaluate their potential as models of human malignant mesothelioma. Methods Five lines were initiated from pleural biopsies, and one from pleural effusion of patients with histologically proven malignant mesothelioma. Mesothelial origin was assessed by standard morphology, Transmission Electron Microscopy (TEM) and immunocytochemistry. Growth characteristics were assayed using population doubling times. Spectral karyotyping was performed to assess chromosomal abnormalities. Authentication of donor specific derivation was undertaken by DNA fingerprinting using a panel of SNPs. Results Most of cell lines exhibited spindle cell shape, with some retaining stellate shapes. At passage 2 to 6 all lines stained positively for calretinin and cytokeratin 19, and demonstrated capacity for anchorage-independent growth. At passage 4 to 16, doubling times ranged from 30–72 hours, and on spectral karyotyping all lines exhibited numerical chromosomal abnormalities ranging from 41 to 113. Monosomy of chromosomes 8, 14, 22 or 17 was observed in three lines. One line displayed four different karyotypes at passage 8, but only one karyotype at passage 42, and another displayed polyploidy at passage 40 which was not present at early passages. At passages 5–17, TEM showed characteristic features of mesothelioma ultrastructure in all lines including microvilli and tight intercellular junctions. Conclusion These six cell lines exhibit varying cell morphology, a range of doubling times, and show diverse passage-dependent structural chromosomal changes observed in malignant tumours. However they retain characteristic immunocytochemical protein expression profiles of mesothelioma during

Karyotypic Diversity and Evolution in a Sympatric Assemblage of Neotropical Electric Knifefish.

PubMed

Cardoso, Adauto L; Pieczarka, Julio C; Crampton, William G R; Ready, Jonathan S; de Figueiredo Ready, Wilsea M B; Waddell, Joseph C; de Oliveira, Jonas A; Nagamachi, Cleusa Y

2018-01-01

Chromosome changes can perform an important role in speciation by acting as post-zygotic reproductive barriers. The Neotropical electric fish genus Brachyhypopomus (Gymnotiformes, Hypopomidae) has 28 described species, but cytogenetic data are hitherto available only for four of them. To understand karyotype evolution and investigate the possible role of chromosome changes in the diversification of this genus, we describe here the karyotype of eight species of Brachyhypopomus from a sympatric assemblage in the central Amazon basin. We analyzed cytogenetic data in the context of a phylogenetic reconstruction of the genus and known patterns of geographical distribution. We found a strong phylogenetic signal for chromosome number and noted that sympatric species have exclusive karyotypes. Additional insights into the role of chromosome changes in the diversification of Brachyhypopomus are discussed.

Karyotypic Diversity and Evolution in a Sympatric Assemblage of Neotropical Electric Knifefish

PubMed Central

Cardoso, Adauto L.; Pieczarka, Julio C.; Crampton, William G. R.; Ready, Jonathan S.; de Figueiredo Ready, Wilsea M. B.; Waddell, Joseph C.; de Oliveira, Jonas A.; Nagamachi, Cleusa Y.

2018-01-01

Chromosome changes can perform an important role in speciation by acting as post-zygotic reproductive barriers. The Neotropical electric fish genus Brachyhypopomus (Gymnotiformes, Hypopomidae) has 28 described species, but cytogenetic data are hitherto available only for four of them. To understand karyotype evolution and investigate the possible role of chromosome changes in the diversification of this genus, we describe here the karyotype of eight species of Brachyhypopomus from a sympatric assemblage in the central Amazon basin. We analyzed cytogenetic data in the context of a phylogenetic reconstruction of the genus and known patterns of geographical distribution. We found a strong phylogenetic signal for chromosome number and noted that sympatric species have exclusive karyotypes. Additional insights into the role of chromosome changes in the diversification of Brachyhypopomus are discussed. PMID:29616077

Citizen Sky, IYA 2009 and What's To Come

NASA Astrophysics Data System (ADS)

Turner, Rebecca; Price, A.; Henden, A.

2010-01-01

Citizen Sky is a multi-year, NSF funded citizen science project involving the bright and mysterious variable star eps Aur. The project was conceived by the IYA 2009 working group on Research Experiences for Students, Teachers, and Citizen-Scientists. Citizen Sky is going beyond simple observing to include a major data analysis component. The goal is to introduce the participant to the full scientific process from background research to paper writing for a peer-reviewed journal. During IYA 2009 the Citizen Sky team was fully assembled, the website was developed and put online, and the first of two participant workshops was held. However, Citizen Sky does not stop or even slow down with the conclusion of IYA 2009. The project will continue to grow in the coming years. New participants are being recruited and trained as the observing phase of the project continues, a second participant workshop is planned for 2010, and the data analysis phase of the project will begin in earnest.

Analysis of photosynthetically active radiation under various sky conditions in Wuhan, Central China.

PubMed

Wang, Lunche; Gong, Wei; Lin, Aiwen; Hu, Bo

2014-10-01

Observations of photosynthetically active radiation (PAR) and global solar radiation (G) at Wuhan, Central China during 2005-2012 were first reported to investigate PAR variability at different time scales and its PAR fraction (F(p)) under different sky conditions. Both G irradiances (I(g)) and PAR irradiances (I(p)) showed similar seasonal features that peaked in values at noon during summer and reached their lower values in winter. F(p) reached higher values during either sunrise or sunset; lower values of F p appeared at local noon because of the absorption effects of water vapor and clouds on long-wave radiation. There was an inverse relationship between clearness index (K(t)) and F(p); the maximum I(p) decreased by 22.3 % (39.7 %) when sky conditions changed from overcast to cloudless in summer (winter); solar radiation was more affected by cloudiness than the seasonal variation in cloudy skies when compared with that in clear skies. The maximum daily PAR irradiation (R(p)) was 11.89 MJ m⁻² day⁻¹ with an annual average of 4.85 MJ m⁻² day⁻¹. F p was in the range of 29-61.5 % with annual daily average value being about 42 %. Meanwhile, hourly, daily, and monthly relationships between R p and G irradiation (R g) under different sky conditions were investigated. It was discovered that cloudy skies were the dominated sky condition in this region. Finally, a clear-sky PAR model was developed by analyzing the dependence of PAR irradiances on optical air mass under various sky conditions for the whole study period in Central China, which will lay foundations for ecological process study in the near future.

Which Observatories have the Clearest Skies? A Comparative Analysis of 2004 as Seen by the Night Sky Live Global Network of CONCAMs

NASA Astrophysics Data System (ADS)

Pereira, W. E.; Muzzin, V.; Merlo, M.; Shamir, L.; Nemiroff, R. J.; Night Sky Live Collaboration

2004-12-01

Nearly identical fisheye CONCAMs are now deployed at many major observatories as part of the Night Sky Live (NSL) global network and return real-time data to http://NightSkyLive.net . Combined, these images create a unique ability to assess and compare the relative ground-truth clarity of the skies above these observatories every few minutes. To this end, data and images from CONCAMs are used to estimate the fraction of time that stars are detectable in at least half the sky for each month of 2004. This preliminary comparison was done by visual inspection of on-line archived CONCAM images. Sites involved include Mauna Kea (Hawaii), Haleakala (Hawaii), Siding Spring (Australia), Canary Islands (Spain), Kitt Peak (Arizona), Cerro Pachon (Chile), Wise (Israel), and Sutherland (South Africa).

Dark Skies are a Universal Resource: IYA Programs on Dark Skies Awareness

NASA Astrophysics Data System (ADS)

Walker, Constance E.; Bueter, C.; Pompea, S. M.; Berglund, K.; Mann, T.; Gay, P.; Crelin, B.; Collins, D.; Sparks, R.

2008-05-01

The loss of a dark night sky as a natural resource is a growing concern. It impacts not only astronomical research, but also health, ecology, safety, economics and energy conservation. Because of its relevance, "Dark Skies” is a theme of the US Node for the International Year of Astronomy (IYA). Its goal is to raise public awareness of the impact of artificial lighting on local environments by getting people involved in a variety of dark skies-related programs. To reach this goal, the ASP session will immerse participants in hands-on, minds-on activities, events and resources on dark skies awareness. These include a planetarium show on DVD, podcasting, social networking, a digital photography contest, The Great Switch Out, Earth Hour, National Dark Skies Week, a traveling exhibit, a 6-minute video tutorial, Dark Skies Teaching Sites, Astronomy Nights in the (National) Parks, Sidewalk Astronomy Nights, and unaided-eye and digital-meter star counting programs like GLOBE at Night. The ASP "Dark Skies” session is offered to provide IYA dark skies-related programs to a variety of attendees. Participants include professional or amateur astronomers, education and public outreach professionals, science center/museum/planetarium staff and educators who want to lead activities involving dark skies awareness in conjunction with IYA. During the session, each participant will be given a package of educational materials on the various dark skies programs. We will provide the "know-how” and the means for session attendees to become community leaders in promoting these dark skies programs as public events at their home institutions during IYA. Participants will be able to jump-start their education programs through the use of well-developed instructional materials and kits sent later if they commit to leading IYA dark skies activities. For more information about the IYA Dark Skies theme, visit http://astronomy2009.us/darkskies/.

Chorionic villus sampling for abnormal screening compared to historical indications: prevalence of abnormal karyotypes.

PubMed

Marshall, Nicole E; Fraley, Gwen; Feist, Cori; Burns, Michael J; Pereira, Leonardo

2012-08-01

To determine the prevalence of abnormal karyotype results in women undergoing chorionic villus sampling (CVS) for abnormal first trimester screening compared to CVS for historical indications (advanced maternal age (AMA) or prior aneuploidy). Retrospective cohort of all patients undergoing CVS at Oregon Health & Science University from January 2006 to June 2010. Patients were separated based on CVS indication: (1) positive ultrasound (U/S) or serum screening; or (2) AMA or prior aneuploidy with normal or no screening. Prevalence of abnormal karyotype results were compared between groups. Fetal karyotyping was successful in 500 of 506 CVS procedures performed. 203 CVS were performed for positive screening with 69 abnormal karyotypes (34.0%). 264 CVS were performed for historical indications with 11 abnormal karyotypes (4.2%). This difference was statistically significant (χ(2) 71.9, p < 0.001; OR 11.8 [95% CI 5.8, 24.6]). There were two age-related aneuplodies in AMA women without positive screening. 42 out of 44 AMA women diagnosed with aneuploidy (95.5%) had abnormal U/S and/or serum screening (35 U/S, 4 serum, 3 U/S and serum). Combined ultrasound and serum screening should be recommended to all women, including AMA women, prior to undergoing invasive testing to improve risk-based counseling and minimize morbidity.

Centromere strength provides the cell biological basis for meiotic drive and karyotype evolution in mice.

PubMed

Chmátal, Lukáš; Gabriel, Sofia I; Mitsainas, George P; Martínez-Vargas, Jessica; Ventura, Jacint; Searle, Jeremy B; Schultz, Richard M; Lampson, Michael A

2014-10-06

Mammalian karyotypes (number and structure of chromosomes) can vary dramatically over short evolutionary time frames. There are examples of massive karyotype conversion, from mostly telocentric (centromere terminal) to mostly metacentric (centromere internal), in 10(2)-10(5) years. These changes typically reflect rapid fixation of Robertsonian (Rb) fusions, a common chromosomal rearrangement that joins two telocentric chromosomes at their centromeres to create one metacentric. Fixation of Rb fusions can be explained by meiotic drive: biased chromosome segregation during female meiosis in violation of Mendel's first law. However, there is no mechanistic explanation of why fusions would preferentially segregate to the egg in some populations, leading to fixation and karyotype change, while other populations preferentially eliminate the fusions and maintain a telocentric karyotype. Here we show, using both laboratory models and wild mice, that differences in centromere strength predict the direction of drive. Stronger centromeres, manifested by increased kinetochore protein levels and altered interactions with spindle microtubules, are preferentially retained in the egg. We find that fusions preferentially segregate to the polar body in laboratory mouse strains when the fusion centromeres are weaker than those of telocentrics. Conversely, fusion centromeres are stronger relative to telocentrics in natural house mouse populations that have changed karyotype by accumulating metacentric fusions. Our findings suggest that natural variation in centromere strength explains how the direction of drive can switch between populations. They also provide a cell biological basis of centromere drive and karyotype evolution. Copyright © 2014 Elsevier Ltd. All rights reserved.

Variability of adjacency effects in sky reflectance measurements.

PubMed

Groetsch, Philipp M M; Gege, Peter; Simis, Stefan G H; Eleveld, Marieke A; Peters, Steef W M

2017-09-01

Sky reflectance R sky (λ) is used to correct in situ reflectance measurements in the remote detection of water color. We analyzed the directional and spectral variability in R sky (λ) due to adjacency effects against an atmospheric radiance model. The analysis is based on one year of semi-continuous R sky (λ) observations that were recorded in two azimuth directions. Adjacency effects contributed to R sky (λ) dependence on season and viewing angle and predominantly in the near-infrared (NIR). For our test area, adjacency effects spectrally resembled a generic vegetation spectrum. The adjacency effect was weakly dependent on the magnitude of Rayleigh- and aerosol-scattered radiance. The reflectance differed between viewing directions 5.4±6.3% for adjacency effects and 21.0±19.8% for Rayleigh- and aerosol-scattered R sky (λ) in the NIR. Under which conditions in situ water reflectance observations require dedicated correction for adjacency effects is discussed. We provide an open source implementation of our method to aid identification of such conditions.

Dynamic karyotype evolution and unique sex determination systems in Leptidea wood white butterflies.

PubMed

Šíchová, Jindra; Voleníková, Anna; Dincă, Vlad; Nguyen, Petr; Vila, Roger; Sahara, Ken; Marec, František

2015-05-19

Chromosomal rearrangements have the potential to limit the rate and pattern of gene flow within and between species and thus play a direct role in promoting and maintaining speciation. Wood white butterflies of the genus Leptidea are excellent models to study the role of chromosome rearrangements in speciation because they show karyotype variability not only among but also within species. In this work, we investigated genome architecture of three cryptic Leptidea species (L. juvernica, L. sinapis and L. reali) by standard and molecular cytogenetic techniques in order to reveal causes of the karyotype variability. Chromosome numbers ranged from 2n = 85 to 91 in L. juvernica and 2n = 69 to 73 in L. sinapis (both from Czech populations) to 2n = 51 to 55 in L. reali (Spanish population). We observed significant differences in chromosome numbers and localization of cytogenetic markers (rDNA and H3 histone genes) within the offspring of individual females. Using FISH with the (TTAGG) n telomeric probe we also documented the presence of multiple chromosome fusions and/or fissions and other complex rearrangements. Thus, the intraspecific karyotype variability is likely due to irregular chromosome segregation of multivalent meiotic configurations. The analysis of female meiotic chromosomes by GISH and CGH revealed multiple sex chromosomes: W1W2W3Z1Z2Z3Z4 in L. juvernica, W1W2W3Z1Z2Z3 in L. sinapis and W1W2W3W4Z1Z2Z3Z4 in L. reali. Our results suggest a dynamic karyotype evolution and point to the role of chromosomal rearrangements in the speciation of Leptidea butterflies. Moreover, our study revealed a curious sex determination system with 3-4 W and 3-4 Z chromosomes, which is unique in the Lepidoptera and which could also have played a role in the speciation process of the three Leptidea species.

Mining the SDSS SkyServer SQL queries log

NASA Astrophysics Data System (ADS)

Hirota, Vitor M.; Santos, Rafael; Raddick, Jordan; Thakar, Ani

2016-05-01

SkyServer, the Internet portal for the Sloan Digital Sky Survey (SDSS) astronomic catalog, provides a set of tools that allows data access for astronomers and scientific education. One of SkyServer data access interfaces allows users to enter ad-hoc SQL statements to query the catalog. SkyServer also presents some template queries that can be used as basis for more complex queries. This interface has logged over 330 million queries submitted since 2001. It is expected that analysis of this data can be used to investigate usage patterns, identify potential new classes of queries, find similar queries, etc. and to shed some light on how users interact with the Sloan Digital Sky Survey data and how scientists have adopted the new paradigm of e-Science, which could in turn lead to enhancements on the user interfaces and experience in general. In this paper we review some approaches to SQL query mining, apply the traditional techniques used in the literature and present lessons learned, namely, that the general text mining approach for feature extraction and clustering does not seem to be adequate for this type of data, and, most importantly, we find that this type of analysis can result in very different queries being clustered together.

[Combined G-banded karyotyping and multiplex ligation-dependent probe amplification for the detection of chromosomal abnormalities in fetuses with congenital heart defects].

PubMed

Liu, Yang; Xie, Jiansheng; Geng, Qian; Xu, Zhiyong; Wu, Weiqin; Luo, Fuwei; Li, Suli; Wang, Qin; Chen, Wubin; Tan, Hongxi; Zhang, Hu

2017-02-10

To assess the value of G-banded karyotyping in combination with multiplex ligation-dependent probe amplification (MLPA) as a tool for the detection of chromosomal abnormalities in fetuses with congenital heart defects. The combined method was used to analyze 104 fetuses with heart malformations identified by ultrasonography. Abnormal findings were confirmed with chromosomal microarray analysis (CMA). Nineteen (18%) fetuses were found to harbor chromosomal aberrations by G-banded karyotyping and MLPA. For 93 cases, CMA has detected abnormalities in 14 cases including 10 pathogenic copy number variations (CNVs) and 4 CNVs of uncertain significance (VOUS). MLPA was able to detect all of the pathogenic CNVs and 1 VOUS CNV. Combined use of G-banded karyotyping and MLPA is a rapid, low-cost and effective method to detect chromosomal abnormalities in fetuses with various heart malformations.

For Spacious Skies Activity Guide. An Interdisciplinary Approach to the Sky.

ERIC Educational Resources Information Center

Ward, C. Whitney; Borden, Jack

Despite the fact that the sky is the most dominant feature of our surroundings, it plays the role of an unseen background for may objects. It is the intent of this guide to bring about an awareness of the sky to young people. Topics for activities include: (1) "Sky Awareness"; (2) "Compass"; (3) "Hand Lens"; (4) "Prism"; (5) "Binoculars"; (6)…

PePSS - A portable sky scanner for measuring extremely low night-sky brightness

NASA Astrophysics Data System (ADS)

Kocifaj, Miroslav; Kómar, Ladislav; Kundracik, František

2018-05-01

A new portable sky scanner designed for low-light-level detection at night is developed and employed in night sky brightness measurements in a rural region. The fast readout, adjustable sensitivity and linear response guaranteed in 5-6 orders of magnitude makes the device well suited for narrow-band photometry in both dark areas and bright urban and suburban environments. Quasi-monochromatic night-sky brightness data are advantageous in the accurate characterization of spectral power distribution of scattered and emitted light and, also allows for the possibility to retrieve light output patterns from whole-city light sources. The sky scanner can operate in both night and day regimes, taking advantage of the complementarity of both radiance data types. Due to its inherent very high sensitivity the photomultiplier tube could be used in night sky radiometry, while the spectrometer-equipped system component capable of detecting elevated intensities is used in daylight monitoring. Daylight is a source of information on atmospheric optical properties that in turn are necessary in processing night sky radiances. We believe that the sky scanner has the potential to revolutionize night-sky monitoring systems.

Openness to Experience and Night-Sky Watching Interest as Predictors of Reading for Pleasure: Path Analysis of a Mediation Model

ERIC Educational Resources Information Center

Kelly, William E.

2010-01-01

The relation between reading for pleasure, night-sky watching interest, and openness to experience were examined in a sample of 129 college students. Results of a path analysis examining a mediation model indicated that the influence of night-sky interest on reading for pleasure was not mediated by the broad personality domain openness to…

Analysis of the Best-Fit Sky Model Produced Through Redundant Calibration of Interferometers

NASA Astrophysics Data System (ADS)

Storer, Dara; Pober, Jonathan

2018-01-01

21 cm cosmology provides unique insights into the formation of stars and galaxies in the early universe, and particularly the Epoch of Reionization. Detection of the 21 cm line is challenging because it is generally 4-5 magnitudes weaker than the emission from foreground sources, and therefore the instruments used for detection must be carefully designed and calibrated. 21 cm cosmology is primarily conducted using interferometers, which are difficult to calibrate because of their complex structure. Here I explore the relationship between sky-based calibration, which relies on an accurate and comprehensive sky model, and redundancy-based calibration, which makes use of redundancies in the orientation of the interferometer's dishes. In addition to producing calibration parameters, redundant calibration also produces a best fit model of the sky. In this work I examine that sky model and explore the possibility of using that best fit model as an additional input to improve on sky-based calibration.

Pituitary tumor in a woman with a 47,XXX karyotype--case report.

PubMed

Witek, A; Skałba, P; Zieba, M

2001-01-01

The 47,XXX karyotype is a rare sex chromosome anomaly. This karyotype is usually not associated with a characteristic physical phenotype. In presented case a 47 triple X women with pituitary tumor and premature ovarian failure is identified. Diagnosis of a 47,XXX individual remains difficult because specific clinical criteria used to identify this condition are not available. The case described should attract attention to how difficult it is to diagnose properly a genetic disease in young women with correct phenotype.

Clinical aspects of 49 infertile males with 45,X/46,XY mosaicism karyotype: A case series.

PubMed

Mohammadpour Lashkari, F; Sadighi Gilani, M A; Ghaheri, A; Zamanian, M R; Borjian Boroujeni, P; Mohseni Meybodi, A; Sabbaghian, M

2018-06-01

Disorders of sex development (DSD) are congenital abnormalities as an atypical development process in either gonadal or chromosomal structure. It is the cause of the abnormality in phenotype and characteristics. Chromosomal analysis plays an important role in the DSD determination. 45,X/46,XY mosaicism is a rare karyotype, and its prevalence is about 1.5 in 10,000 newborns. It affects the growth, hormonal balance, gonad development and histology. All data such as height, male general appearance, testis size and volume, external genitalia, spermogram and hormonal levels, testis pathology, Y chromosome microdeletion and karyotype, and assisted reproductive technology (ART) outcome were recorded based on patients profile and history. We investigated 64 infertile males with 45,X/46,XY mosaicism. Fifteen cases who had structural abnormalities in Y chromosome were excluded. From 49 available spermogram, 21 cases reported as azoospermic men, while 28 of them classified as nonazoospermic patients in which four of them displayed normal spermogram. According to hormonal evaluation, there were no significant differences between azoospermic and nonazoospermic groups. In azoospermia, only three couples underwent an ART cycle in which all of them failed. From 14 nonazoospermic cases who entered into the ART cycle, three cases experienced a successful pregnancy that one of the prosperous outcomes was twins. In 45,X/46,XY cases, both 45,X and 46,XY cell lines are seen. Various distributions of both cell lines can reflect a wide range of phenotypes that may be the most comprehensive evaluation in infertile males with 45,X/46,XY karyotype. It assumes that karyotyping as a main diagnostic test can enable us to find these rare cases. © 2018 Blackwell Verlag GmbH.

Human ESCs predisposition to karyotypic instability: Is a matter of culture adaptation or differential vulnerability among hESC lines due to inherent properties?

PubMed

Catalina, Puri; Montes, Rosa; Ligero, Gertru; Sanchez, Laura; de la Cueva, Teresa; Bueno, Clara; Leone, Paola E; Menendez, Pablo

2008-10-03

The use of human embryonic stem cells (hESCs) in research is increasing and hESCs hold the promise for many biological, clinical and toxicological studies. Human ESCs are expected to be chromosomally stable since karyotypic changes represent a pitfall for potential future applications. Recently, several studies have analysed the genomic stability of several hESC lines maintained after prolonged in vitro culture but controversial data has been reported. Here, we prompted to compare the chromosomal stability of three hESC lines maintained in the same laboratory using identical culture conditions and passaging methods. Molecular cytogenetic analyses performed in three different hESC lines maintained in parallel in identical culture conditions revealed significant differences among them in regard to their chromosomal integrity. In feeders, the HS181, SHEF-1 and SHEF-3 hESC lines were chromosomally stable up to 185 passages using either mechanical or enzymatic dissection methods. Despite the three hESC lines were maintained under identical conditions, each hESC line behaved differently upon being transferred to a feeder-free culture system. The two younger hESC lines, HS181 (71 passages) and SHEF-3 (51 passages) became chromosomally unstable shortly after being cultured in feeder-free conditions. The HS181 line gained a chromosome 12 by passage 17 and a marker by passage 21, characterized as a gain of chromosome 20 by SKY. Importantly, the mosaicism for trisomy 12 gradually increased up to 89% by passage 30, suggesting that this karyotypic abnormality provides a selective advantage. Similarly, the SHEF-3 line also acquired a trisomy of chromosome 14 as early as passage 10. However, this karyotypic aberration did not confer selective advantage to the genetically abnormal cells within the bulk culture and the level of mosaicism for the trisomy 14 remained overtime between 15%-36%. Strikingly, however, a much older hESC line, SHEF-1, which was maintained for 185 passages

Sky Detection in Hazy Image.

PubMed

Song, Yingchao; Luo, Haibo; Ma, Junkai; Hui, Bin; Chang, Zheng

2018-04-01

Sky detection plays an essential role in various computer vision applications. Most existing sky detection approaches, being trained on ideal dataset, may lose efficacy when facing unfavorable conditions like the effects of weather and lighting conditions. In this paper, a novel algorithm for sky detection in hazy images is proposed from the perspective of probing the density of haze. We address the problem by an image segmentation and a region-level classification. To characterize the sky of hazy scenes, we unprecedentedly introduce several haze-relevant features that reflect the perceptual hazy density and the scene depth. Based on these features, the sky is separated by two imbalance SVM classifiers and a similarity measurement. Moreover, a sky dataset (named HazySky) with 500 annotated hazy images is built for model training and performance evaluation. To evaluate the performance of our method, we conducted extensive experiments both on our HazySky dataset and the SkyFinder dataset. The results demonstrate that our method performs better on the detection accuracy than previous methods, not only under hazy scenes, but also under other weather conditions.

Sky Detection in Hazy Image

PubMed Central

Song, Yingchao; Luo, Haibo; Ma, Junkai; Hui, Bin; Chang, Zheng

2018-01-01

Sky detection plays an essential role in various computer vision applications. Most existing sky detection approaches, being trained on ideal dataset, may lose efficacy when facing unfavorable conditions like the effects of weather and lighting conditions. In this paper, a novel algorithm for sky detection in hazy images is proposed from the perspective of probing the density of haze. We address the problem by an image segmentation and a region-level classification. To characterize the sky of hazy scenes, we unprecedentedly introduce several haze-relevant features that reflect the perceptual hazy density and the scene depth. Based on these features, the sky is separated by two imbalance SVM classifiers and a similarity measurement. Moreover, a sky dataset (named HazySky) with 500 annotated hazy images is built for model training and performance evaluation. To evaluate the performance of our method, we conducted extensive experiments both on our HazySky dataset and the SkyFinder dataset. The results demonstrate that our method performs better on the detection accuracy than previous methods, not only under hazy scenes, but also under other weather conditions. PMID:29614778

Airborne photography of chemical releases and analysis of twilight sky brightness data, phases 1 and 2

NASA Technical Reports Server (NTRS)

Bedinger, J. F.; Constantinides, E.

1976-01-01

The photography from aboard an aircraft of chemical releases is reported. The equipment installation on the aircraft is described, and photographs of the releases are included. An extensive analysis of twilight sky photographs is presented.

For Spacious Skies: A Teacher's Guide. An Interdisciplinary Approach to the Sky.

ERIC Educational Resources Information Center

For Spacious Skies, Inc., Lexington, MA.

Despite the fact that the sky is the most dominant feature of our surroundings, it plays the role of an unseen background for many objects. It is the intent of this guide to bring about an awareness of the sky to young people. Topics for activities include: (1) "Sky Awareness"; (2) "Compass"; (3) "Hand Lens"; (4)…

Advances in cytogenetics of Brazilian rodents: cytotaxonomy, chromosome evolution and new karyotypic data

PubMed Central

Di-Nizo, Camilla Bruno; Banci, Karina Rodrigues da Silva; Sato-Kuwabara, Yukie; Silva, Maria José de J.

2017-01-01

Abstract Rodents constitute one of the most diversified mammalian orders. Due to the morphological similarity in many of the groups, their taxonomy is controversial. Karyotype information proved to be an important tool for distinguishing some species because some of them are species-specific. Additionally, rodents can be an excellent model for chromosome evolution studies since many rearrangements have been described in this group.This work brings a review of cytogenetic data of Brazilian rodents, with information about diploid and fundamental numbers, polymorphisms, and geographical distribution. We point out that, even with the recent efforts on cytogenetic studies in this group, many species lack karyotypic data. Moreover, we describe for the first time the karyotype of Carterodon sulcidens (Lund, 1838) (Family Echimyidae), a new fundamental number for an undescribed species of Neacomys Thomas, 1900 (Family Cricetidae, Subfamily Sigmodontinae), and illustrate the karyotype of a Brazilian specimen of Mus musculus Linnaeus, 1758 (Family Muridae). This review compiles the cytogenetic data on Brazilian rodents reported in the last three decades, after the last revision published in 1984, including synonyms, chromosomal variations, and geographic distribution. Additionally, it also reinforces that Brazilian biodiversity is still poorly known, considering the new data reported here. PMID:29362668

Open Skies Project Computational Fluid Dynamic Analysis

DTIC Science & Technology

1994-03-01

109 -. -_ _ 9 . CONCLUSIONSI1 f 10. LIST OF REFERENCES _________ ___________112 APPENDIX A: Transition Prediction __________________116 B...Behind the Open Skies Plate 20 8. VSAERO Results on the Alternate Fairing 21 9 . Centerline Cp Comparisons 22 10. VSAERO Wing Effects Study Centerline C...problems. The assistance Mrs. Mary Ann Mages, at Kirtland Supercomputer Center ( PL /SCPR) gave by setting a precedent for supercomputer account

Comparative Chromosome Map and Heterochromatin Features of the Gray Whale Karyotype (Cetacea).

PubMed

Kulemzina, Anastasia I; Proskuryakova, Anastasia A; Beklemisheva, Violetta R; Lemskaya, Natalia A; Perelman, Polina L; Graphodatsky, Alexander S

2016-01-01

Cetacean karyotypes possess exceptionally stable diploid numbers and highly conserved chromosomes. To date, only toothed whales (Odontoceti) have been analyzed by comparative chromosome painting. Here, we studied the karyotype of a representative of baleen whales, the gray whale (Eschrichtius robustus, Mysticeti), by Zoo-FISH with dromedary camel and human chromosome-specific probes. We confirmed a high degree of karyotype conservation and found an identical order of syntenic segments in both branches of cetaceans. Yet, whale chromosomes harbor variable heterochromatic regions constituting up to a third of the genome due to the presence of several types of repeats. To investigate the cause of this variability, several classes of repeated DNA sequences were mapped onto chromosomes of whale species from both Mysticeti and Odontoceti. We uncovered extensive intrapopulation variability in the size of heterochromatic blocks present in homologous chromosomes among 3 individuals of the gray whale by 2-step differential chromosome staining. We show that some of the heteromorphisms observed in the gray whale karyotype are due to distinct amplification of a complex of common cetacean repeat and heavy satellite repeat on homologous autosomes. Furthermore, we demonstrate localization of the telomeric repeat in the heterochromatin of both gray and pilot whale (Globicephala melas, Odontoceti). Heterochromatic blocks in the pilot whale represent a composite of telomeric and common repeats, while heavy satellite repeat is lacking in the toothed whale consistent with previous studies. © 2016 S. Karger AG, Basel.

Rescue karyotyping: a case series of array-based comparative genomic hybridization evaluation of archival conceptual tissue

PubMed Central

2014-01-01

Background Determination of fetal aneuploidy is central to evaluation of recurrent pregnancy loss (RPL). However, obtaining this information at the time of a miscarriage is not always possible or may not have been ordered. Here we report on “rescue karyotyping”, wherein DNA extracted from archived paraffin-embedded pregnancy loss tissue from a prior dilation and curettage (D&C) is evaluated by array-based comparative genomic hybridization (aCGH). Methods A retrospective case series was conducted at an academic medical center. Patients included had unexplained RPL and a prior pregnancy loss for which karyotype information would be clinically informative but was unavailable. After extracting DNA from slides of archived tissue, aCGH with a reduced stringency approach was performed, allowing for analysis of partially degraded DNA. Statistics were computed using STATA v12.1 (College Station, TX). Results Rescue karyotyping was attempted on 20 specimens from 17 women. DNA was successfully extracted in 16 samples (80.0%), enabling analysis at either high or low resolution. The longest interval from tissue collection to DNA extraction was 4.2 years. There was no significant difference in specimen sufficiency for analysis in the collection-to-extraction interval (p = 0.14) or gestational age at pregnancy loss (p = 0.32). Eight specimens showed copy number variants: 3 trisomies, 2 partial chromosomal deletions, 1 mosaic abnormality and 2 unclassified variants. Conclusions Rescue karyotyping using aCGH on DNA extracted from paraffin-embedded tissue provides the opportunity to obtain critical fetal cytogenetic information from a prior loss, even if it occurred years earlier. Given the ubiquitous archiving of paraffin embedded tissue obtained during a D&C and the ease of obtaining results despite long loss-to-testing intervals or early gestational age at time of fetal demise, this may provide a useful technique in the evaluation of couples with recurrent pregnancy

[Lymphocyte culture and partial karyotype of the marine turtle Caretta caretta (Testudines: Cheloniidae) in Santa Marta, Colombian Caribbean].

PubMed

López, Ellie Ann; Hernández-Fernández, Javier; Bernal-Villegas, Jaime

2008-09-01

Over the past few years an important reduction in the number of nesting marine turtle Caretta caretta individuals has been registered in the Colombian Caribbean, raising the question of a possible extinction in the medium-term. A conservation plan is needed. We studied the culture requirements for C. caretta lymphocytes and preliminary karyotype analysis for cytogenetic identification, immunological study and toxicology without the need to kill individuals. Peripheral blood samples were obtained from 47 individuals in Santa Marta, Colombia and tests were made until optimal conditions were established for lymphocyte culture. The karyotype had 56 chromosomes, 32 macrochromosomes and 24 micro-chromosomes. An ideogram showed that C. caretta has four groups of chromosomes. Sexual chromosomes were not observed. These results do not coincide with the karyotype described from the Pacific (Japan). The present study is the first to include a complete description of the chromosome morphology of turtles from the Atlantic Ocean. It is possible that one of the adaptive strategies of this species is genetic interchange with other species of the family, producing viable hybrids. Individuals in this study might be viable hybrids of C. caretta and further molecular studies are needed.

Northern Sky Variability Survey: Public Data Release

NASA Astrophysics Data System (ADS)

Woźniak, P. R.; Vestrand, W. T.; Akerlof, C. W.; Balsano, R.; Bloch, J.; Casperson, D.; Fletcher, S.; Gisler, G.; Kehoe, R.; Kinemuchi, K.; Lee, B. C.; Marshall, S.; McGowan, K. E.; McKay, T. A.; Rykoff, E. S.; Smith, D. A.; Szymanski, J.; Wren, J.

2004-04-01

The Northern Sky Variability Survey (NSVS) is a temporal record of the sky over the optical magnitude range from 8 to 15.5. It was conducted in the course of the first-generation Robotic Optical Transient Search Experiment (ROTSE-I) using a robotic system of four comounted unfiltered telephoto lenses equipped with CCD cameras. The survey was conducted from Los Alamos, New Mexico, and primarily covers the entire northern sky. Some data in southern fields between declinations 0° and -38° are also available, although with fewer epochs and noticeably lesser quality. The NSVS contains light curves for approximately 14 million objects. With a 1 yr baseline and typically 100-500 measurements per object, the NSVS is the most extensive record of stellar variability across the bright sky available today. In a median field, bright unsaturated stars attain a point-to-point photometric scatter of ~0.02 mag and position errors within 2". At Galactic latitudes |b|<20deg, the data quality is limited by severe blending due to the ~14" pixel size. We present basic characteristics of the data set and describe data collection, analysis, and distribution. All NSVS photometric measurements are available for on-line public access from the Sky Database for Objects in Time-Domain (SkyDOT) at Los Alamos National Laboratory. Copies of the full survey photometry may also be requested on tape. Based on observations obtained with the ROTSE-I robotic telescope, which was operated at Los Alamos National Laboratory.

Interpreting aCGH-defined karyotypic changes in gliomas using copy number status, loss of heterozygosity and allelic ratios

PubMed Central

Cowell, John K; Lo, Ken C; Luce, Jesse; Hawthorn, Lesleyann

2009-01-01

We have used SNP mapping arrays to simultaneously record copy number changes, loss of heterozygosity and allele ratios (ploidy) in a series of 13 gliomas. This combined analysis has defined novel amplification events in this tumor type involving chr1:241544532-243005121 and chr18:54716681-54917277 which contain the AKT3 and ZNF532 genes respectively. The high resolution of this analysis has also identified homozygous deletions involving chr17:25600031-26490848 and Chr19:53883612-55061878. Throughout the karyotypes of these tumors, the combined analysis revealed counter intuitive relationships between copy number and LOH that requires reinterpretation of the significance of copy number gains and losses. It was not uncommon to observe copy number gains that were associated with loss of heterozygosity as well as copy number losses that were not. These events appeared to be related to ploidy status in the tumors as determined using allelic ratio calculations. Overall, this analysis of gliomas provides evidence for the need to perform more comprehensive interpretation of the CGH data beyond copy number analysis alone to evaluate the significance of individual events in the karyotypes. PMID:19818351

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing

PubMed Central

Nguyen, Nga Thi Thuy; Vincens, Pierre

2018-01-01

Abstract Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from extant species, as well as ancestral gene content and gene order for vertebrates and flowering plants, in an integrated evolutionary context. New analyses and visualization tools have recently been implemented in Genomicus Vertebrate. Karyotype structures from several genomes can now be compared along an evolutionary pathway (Multi-KaryotypeView), and synteny blocks can be computed and visualized between any two genomes (PhylDiagView). PMID:29087490

FISH with whole chromosome and telomeric probes demonstrates huge karyotypic reorganization with ITS between two species of Oryzomyini (Sigmodontinae, Rodentia): Hylaeamys megacephalus probes on Cerradomys langguthi karyotype.

PubMed

Nagamachi, Cleusa Yoshiko; Pieczarka, Julio Cesar; O'Brien, Patricia Caroline Mary; Pinto, Jamilly Amaral; Malcher, Stella Miranda; Pereira, Adenilson Leão; Rissino, Jorge das Dores; Mendes-Oliveira, Ana Cristina; Rossi, Rogério Vieira; Ferguson-Smith, Malcolm Andrew

2013-04-01

Rodentia comprises 42 % of living mammalian species. The taxonomic identification can be difficult, the number of species currently known probably being underestimated, since many species show only slight morphological variations. Few studies surveyed the biodiversity of species, especially in the Amazon region. Cytogenetic studies show great chromosomal variability in rodents, with diploid numbers ranging from 10 to 102, making it difficult to find chromosomal homologies by comparative G banding. Chromosome painting is useful, but only a few species of rodents have been studied by this technique. In this study, we sorted whole chromosome probes by fluorescence-activated cell sorting from two Hylaeamys megacephalus individuals, an adult female (2n = 54) and a fetus (2n = 50). We made reciprocal chromosome painting between these karyotypes and cross-species hybridization on Cerradomys langguthi (2n = 46). Both species belong to the tribe Oryzomyini (Sigmodontinae), which is restricted to South America and were collected in the Amazon region. Twenty-four chromosome-specific probes from the female and 25 from the fetus were sorted. Reciprocal chromosome painting shows that the karyotype of the fetus does not represent a new cytotype, but an unbalanced karyotype with multiple rearrangements. Cross-species hybridization of H. megacephalus probes on metaphases of C. langguthi shows that 11 chromosomes of H. megacephalus revealed conserved synteny, 10 H. megacephalus probes hybridized to two chromosomal regions and three hybridized to three regions. Associations were observed on chromosomes pairs 1-4 and 11. Fluorescence in situ hybridization with a telomeric probe revealed interstitial regions in three pairs (1, 3, and 4) of C. langguthi chromosomes. We discuss the genomic reorganization of the C. langguthi karyotype.

Selected clinical features of the head and neck in women with Turner syndrome and the 45,X/46,XY karyotype.

PubMed

Frelich, Agnieszka; Frelich, Jakub; Jeż, Wacław; Irzyniec, Tomasz

2017-01-01

A 45,X/46,XY karyotype in women with Turner syndrome (TS) is very rare. The presence of a Y chromosome in the karyotype causes phenotypic differences and increased risk for neoplastic disease, compared to TS-women with other karyotypes. Our study addresses an issue: non-genital phenotypic differences between TS-patients with a Y-chromosome of their karyotype and TS-women without it. Results from patient history/physical examinations of the head and neck of eight TS-women and the 45,X/46,XY karyotype were compared with those observed in 164 TS-women and 30 controls. The heights of TS-groups: 142.5 ± 7.2 and 144.9 ± 7.2 cm were lower than controls (165.2 ± 6.6 cm). Participants were examined from 1995 to 2014. Among 28 study parameters, 15 were more frequently observed in TS women with the 45,X/46,XY karyotype compared to controls. Only abnormalities in the oral cavity and a history of childhood lymphoedema, differed significantly in the TS groups. With respect to the head and neck, the patient history and physical examination results of TS-women and the 45,X/46,XY karyotype and TS and other karyotypes revealed similar differences compared to controls. Compared to others TS patients, 45,X/46,XY individuals might more frequently have oral cavity soft tissue abnormalities and more rarely a history of childhood lymphoedema. (Endokrynol Pol 2017; 68 (1): 47-52).

Fluorescence In Situ Hybridization–Based Karyotyping of Soybean Translocation Lines

PubMed Central

Findley, Seth D.; Pappas, Allison L.; Cui, Yaya; Birchler, James A.; Palmer, Reid G.; Stacey, Gary

2011-01-01

Soybean (Glycine max [L.] Merr.) is a major crop species and, therefore, a major target of genomic and genetic research. However, in contrast to other plant species, relatively few chromosomal aberrations have been identified and characterized in soybean. This is due in part to the difficulty of cytogenetic analysis of its small, morphologically homogeneous chromosomes. The recent development of a fluorescence in situ hybridization –based karyotyping system for soybean has enabled our characterization of most of the chromosomal translocation lines identified to date. Utilizing genetic data from existing translocation studies in soybean, we identified the chromosomes and approximate breakpoints involved in five translocation lines. PMID:22384324

Imaging spectropolarimetry of cloudy skies

NASA Astrophysics Data System (ADS)

Pust, Nathan; Shaw, Joseph A.

2006-05-01

The polarization state of atmospheric radiance varies with cloudiness and cloud type. We have developed a dual-field-of-view imaging spectro-polarimeter for measuring atmospheric polarization in five spectral bands from 450 to 700 nm. This instrument improves the acquisition time of past full-sky digital camera designs to 400 ms using liquid crystal variable retarders (LCVRs). The system can be used to measure polarization with either fisheye or telephoto optics, allowing studies of all-sky and target polarization. We present and describe measurements of sky polarization with clear and variably cloudy sky conditions. In clear skies, we observe a slight upward trend of the degree of polarization with wavelength, in agreement with previous observations. Presence of clouds generally reduces both cloudy sky and surrounding clear sky degree of polarization. The polarization measured from a cloud often reflects only the Rayleigh scattering between the instrument and the cloud, but some of our recent data shows partially polarized cloud scattering.

Sky coverage modeling for the whole sky for laser guide star multiconjugate adaptive optics.

PubMed

Wang, Lianqi; Andersen, David; Ellerbroek, Brent

2012-06-01

The scientific productivity of laser guide star adaptive optics systems strongly depends on the sky coverage, which describes the probability of finding natural guide stars for the tip/tilt wavefront sensor(s) to achieve a certain performance. Knowledge of the sky coverage is also important for astronomers planning their observations. In this paper, we present an efficient method to compute the sky coverage for the laser guide star multiconjugate adaptive optics system, the Narrow Field Infrared Adaptive Optics System (NFIRAOS), being designed for the Thirty Meter Telescope project. We show that NFIRAOS can achieve more than 70% sky coverage over most of the accessible sky with the requirement of 191 nm total rms wavefront.

Karyotype of cryopreserved bone marrow cells.

PubMed

Chauffaille, M L L F; Pinheiro, R F; Stefano, J T; Kerbauy, J

2003-07-01

The analysis of chromosomal abnormalities is important for the study of hematological neoplastic disorders since it facilitates classification of the disease. The ability to perform chromosome analysis of cryopreserved malignant marrow or peripheral blast cells is important for retrospective studies. In the present study, we compared the karyotype of fresh bone marrow cells (20 metaphases) to that of cells stored with a simplified cryopreservation method, evaluated the effect of the use of granulocyte-macrophage colony-stimulating factor (GM-CSF) as an in vitro mitotic index stimulator, and compared the cell viability and chromosome morphology of fresh and cryopreserved cells whenever possible (sufficient metaphases for analysis). Twenty-five bone marrow samples from 24 patients with hematological disorders such as acute myeloid leukemia, acute lymphoblastic leukemia, myelodysplastic syndrome, chronic myeloid leukemia, megaloblastic anemia and lymphoma (8, 3, 3, 8, 1, and 1 patients, respectively) were selected at diagnosis, at relapse or during routine follow-up and one sample was obtained from a bone marrow donor after informed consent. Average cell viability before and after freezing was 98.8 and 78.5%, respectively (P < 0.05). Cytogenetic analysis was successful in 76% of fresh cell cultures, as opposed to 52% of cryopreserved samples (P < 0.05). GM-CSF had no proliferative effect before or after freezing. The morphological aspects of the chromosomes in fresh and cryopreserved cells were subjectively the same. The present study shows that cytogenetic analysis of cryopreserved bone marrow cells can be a reliable alternative when fresh cell analysis cannot be done, notwithstanding the reduced viability and lower percent of successful analysis that are associated with freezing.

Association of electrophoretic karyotype of Candida stellatoidea with virulence for mice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kwon-Chung, K.J.; Wickes, B.L.; Merz, W.G.

1988-07-01

Seven isolates of Candida stellatoidea were studied for their electrophoretic karyotype, virulence for mice, sensitivity to UV radiation, growth rate in vitro, reaction on cycloheximide-indicator medium, and proteinase activity. The isolates exhibited one of two distinct electrophoretic karyotypes as determined by orthogonal field alternating gel electrophoresis (OFAGE). Four isolates, including the type culture of C. stellatoidea, belonged to electrophoretic karyotype type I by OFAGE, showing eight to nine bands of which at least two bands were less than 1,000 kilobases in size as estimated by comparison with the DNA bands of Saccharomyces cerevisiae. These isolates failed to produce fatal infectionmore » in mice within 20 days when 5 X 10(5) cells were injected intravenously. The yeasts were cleared from the kidneys of two of three mice tested by day 30. Type I showed proteinase activity on bovine serum albumin agar at pH 3.8 and produced a negative reaction on cycloheximide-bromcresol green medium within 48 h. The three grouped in type II by OFAGE showed banding patterns similar to those of a well-characterized isolate of Candida albicans. The isolates of type II had an electrophoretic karyotype of six to seven bands approximately 1,200 kilobases or greater in size. All three type II isolates were highly virulent for mice, producing fatality curves similar to those of a previously studied C. albicans isolate. From 80 to 90% of the mice injected with 5 X 10(5) cells intravenously died within 20 days. The type II isolates produced a positive reaction on cycloheximide-bromcresol green agar and showed no proteinase activity on bovine serum albumin agar at the low pH. In addition, the type II isolates grew faster and were significantly more resistant to UV irradiation than the type I isolates.« less

First Description of the Karyotype and Sex Chromosomes in the Komodo Dragon (Varanus komodoensis).

PubMed

Johnson Pokorná, Martina; Altmanová, Marie; Rovatsos, Michail; Velenský, Petr; Vodička, Roman; Rehák, Ivan; Kratochvíl, Lukáš

2016-01-01

The Komodo dragon (Varanus komodoensis) is the largest lizard in the world. Surprisingly, it has not yet been cytogenetically examined. Here, we present the very first description of its karyotype and sex chromosomes. The karyotype consists of 2n = 40 chromosomes, 16 macrochromosomes and 24 microchromosomes. Although the chromosome number is constant for all species of monitor lizards (family Varanidae) with the currently reported karyotype, variability in the morphology of the macrochromosomes has been previously documented within the group. We uncovered highly differentiated ZZ/ZW sex microchromosomes with a heterochromatic W chromosome in the Komodo dragon. Sex chromosomes have so far only been described in a few species of varanids including V. varius, the sister species to Komodo dragon, whose W chromosome is notably larger than that of the Komodo dragon. Accumulations of several microsatellite sequences in the W chromosome have recently been detected in 3 species of monitor lizards; however, these accumulations are absent from the W chromosome of the Komodo dragon. In conclusion, although varanids are rather conservative in karyotypes, their W chromosomes exhibit substantial variability at the sequence level, adding further evidence that degenerated sex chromosomes may represent the most dynamic genome part. © 2016 S. Karger AG, Basel.

Improving precision of Pi of the Sky photometric measurements

NASA Astrophysics Data System (ADS)

Siudek, M.; Małek, K.; Mankiewicz, L.; Opiela, R.; Sokołowski, M.; Źarnecki, A. F.

Pi of the Sky is a system of robotic telescopes designed for observations of short timescale astrophysical phenomena, like prompt optical GRB emission. The apparatus is designed to monitor a large fraction of the sky with 12^{m} - 13^{m} range and time resolution of the order of 1, 10 seconds. All measurements taken by the Pi of the Sky detector located in Las Campanas Observatory (LCO) in Chile are available on the Pi of the Sky website through a dedicated interface which also allows to download the selected data. Pi of the Sky database from period 2006 - 2009 contains more than 2 billions measurements of almost 17 millions of objects. In order to facilitate analysis of variable stars we have developed a system of dedicated filters to remove bad measurements or frames. They are needed to remove measurements affected by detector imperfections (hot pixels, measurement close to CCD edge, background due to opened shutter) or observation conditions (planet or planetoid passage, moon halo). With approximate color calibration algorithm taking into account appropriate corrections based on the spectral type of reference stars the photometry algorithm can be improved further. This process is illustrated by the analysis of the BG Ind system where we have been able to reduce the total systematic uncertainty to about 0.05 magnitudes.

Dark Skies are a Universal Resource. So are Quiet Skies!

NASA Astrophysics Data System (ADS)

Maddalena, Ronald J.; Heatherly, S.

2008-05-01

You've just purchased your first telescope. But where to set it up? Certainly not a WalMart parking lot. Too much light pollution! In the same way that man-made light obscures our night sky and blinds ground-based optical telescopes, man-made radio signals blind radio telescopes as well. NRAO developed the Quiet Skies project to increase awareness of radio frequency interference (RFI) and radio astronomy in general by engaging students in local studies of RFI. To do that we created a sensitive detector which measures RFI. We produced 20 of these, and assembled kits containing detectors and supplementary materials for loan to schools. Students conduct experiments to measure the properties of RFI in their area, and input their measurements into a web-based data base. The Quiet Skies project is a perfect complement to the IYA Dark Skies Awareness initiative. We hope to place 500 Quiet Skies detectors into the field through outreach to museums and schools around the world. Should we be successful, we will sustain this global initiative via a continuing loan program. One day we hope to have a publicly generated image of the Earth which shows RFI much as the Earth at Night image illustrates light pollution. The poster will present the components of the project in detail, including our plans for IYA, and various low-cost alternative strategies for introducing RFI and radio astronomy to the public. We will share the results of some of the experiments already being performed by high school students. Development of the Quiet Skies project was funded by a NASA IDEAS grant. The National Radio Astronomy Observatory is a facility of the National Science Foundation, operated under cooperative agreement by Associated Universities, Inc.

Infrared Sky Imager (IRSI) Instrument Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morris, Victor R.

2016-04-01

The Infrared Sky Imager (IRSI) deployed at the Atmospheric Radiation Measurement (ARM) Climate Research Facility is a Solmirus Corp. All Sky Infrared Visible Analyzer. The IRSI is an automatic, continuously operating, digital imaging and software system designed to capture hemispheric sky images and provide time series retrievals of fractional sky cover during both the day and night. The instrument provides diurnal, radiometrically calibrated sky imagery in the mid-infrared atmospheric window and imagery in the visible wavelengths for cloud retrievals during daylight hours. The software automatically identifies cloudy and clear regions at user-defined intervals and calculates fractional sky cover, providing amore » real-time display of sky conditions.« less

[X tetrasomy (48,XXXX karyotype) in a girl with altered behavior].

PubMed

Rodado, Maria José; Manchón Trives, Irene; Lledó Bosch, Belén; Galán Sánchez, Francisco

2010-07-01

We report the case of a 14-year-old girl with mental retardation and dysmorphic features referred to child psychiatry because of altered behavior at school. Karyotyping (GTG banding), in situ fluorescent hybridization (FISH) and molecular study of parental origin by polymorphic STS were performed. Genetic study revealed a 48,XXXX karyotype with a maternal origin of the X-tetrasomy. The mechanism was successive non-dysjunction at meiosis I and II. The interest of this case lies in the rarity of the chromosomal anomaly and its late diagnosis, leading to a failure to adapt the girl's education to her needs, with consequences for her psyche. Copyright © 2010 SEP y SEPB. Published by Elsevier Espana. All rights reserved.

All Sky Cloud Coverage Monitoring for SONG-China Project

NASA Astrophysics Data System (ADS)

Tian, J. F.; Deng, L. C.; Yan, Z. Z.; Wang, K.; Wu, Y.

2016-05-01

In order to monitor the cloud distributions at Qinghai station, a site selected for SONG (Stellar Observations Network Group)-China node, the design of the proto-type of all sky camera (ASC) applied in Xinglong station is adopted. Both hardware and software improvements have been made in order to be more precise and deliver quantitative measurements. The ARM (Advanced Reduced Instruction Set Computer Machine) MCU (Microcontroller Unit) instead of PC is used to control the upgraded version of ASC. A much higher reliability has been realized in the current scheme. Independent of the positions of the Sun and Moon, the weather conditions are constantly changing, therefore it is difficult to get proper exposure parameters using only the temporal information of the major light sources. A realistic exposure parameters for the ASC can actually be defined using a real-time sky brightness monitor that is also installed at the same site. The night sky brightness value is a very sensitive function of the cloud coverage, and can be accurately measured by the sky quality monitor. We study the correlation between the exposure parameter and night sky brightness value, and give the mathematical relation. The images of the all sky camera are inserted into database directly. All sky quality images are archived in FITS format which can be used for further analysis.

OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.

PubMed

Vidal, Enrique; le Dily, François; Quilez, Javier; Stadhouders, Ralph; Cuartero, Yasmina; Graf, Thomas; Marti-Renom, Marc A; Beato, Miguel; Filion, Guillaume J

2018-05-04

The three-dimensional conformation of genomes is an essential component of their biological activity. The advent of the Hi-C technology enabled an unprecedented progress in our understanding of genome structures. However, Hi-C is subject to systematic biases that can compromise downstream analyses. Several strategies have been proposed to remove those biases, but the issue of abnormal karyotypes received little attention. Many experiments are performed in cancer cell lines, which typically harbor large-scale copy number variations that create visible defects on the raw Hi-C maps. The consequences of these widespread artifacts on the normalized maps are mostly unexplored. We observed that current normalization methods are not robust to the presence of large-scale copy number variations, potentially obscuring biological differences and enhancing batch effects. To address this issue, we developed an alternative approach designed to take into account chromosomal abnormalities. The method, called OneD, increases reproducibility among replicates of Hi-C samples with abnormal karyotype, outperforming previous methods significantly. On normal karyotypes, OneD fared equally well as state-of-the-art methods, making it a safe choice for Hi-C normalization. OneD is fast and scales well in terms of computing resources for resolutions up to 5 kb.

Solar Resource Assessment with Sky Imagery and a Virtual Testbed for Sky Imager Solar Forecasting

NASA Astrophysics Data System (ADS)

Kurtz, Benjamin Bernard

In recent years, ground-based sky imagers have emerged as a promising tool for forecasting solar energy on short time scales (0 to 30 minutes ahead). Following the development of sky imager hardware and algorithms at UC San Diego, we present three new or improved algorithms for sky imager forecasting and forecast evaluation. First, we present an algorithm for measuring irradiance with a sky imager. Sky imager forecasts are often used in conjunction with other instruments for measuring irradiance, so this has the potential to decrease instrumentation costs and logistical complexity. In particular, the forecast algorithm itself often relies on knowledge of the current irradiance which can now be provided directly from the sky images. Irradiance measurements are accurate to within about 10%. Second, we demonstrate a virtual sky imager testbed that can be used for validating and enhancing the forecast algorithm. The testbed uses high-quality (but slow) simulations to produce virtual clouds and sky images. Because virtual cloud locations are known, much more advanced validation procedures are possible with the virtual testbed than with measured data. In this way, we are able to determine that camera geometry and non-uniform evolution of the cloud field are the two largest sources of forecast error. Finally, with the assistance of the virtual sky imager testbed, we develop improvements to the cloud advection model used for forecasting. The new advection schemes are 10-20% better at short time horizons.

Dynamics of Tumor Heterogeneity Derived from Clonal Karyotypic Evolution.

PubMed

Laughney, Ashley M; Elizalde, Sergi; Genovese, Giulio; Bakhoum, Samuel F

2015-08-04

Numerical chromosomal instability is a ubiquitous feature of human neoplasms. Due to experimental limitations, fundamental characteristics of karyotypic changes in cancer are poorly understood. Using an experimentally inspired stochastic model, based on the potency and chromosomal distribution of oncogenes and tumor suppressor genes, we show that cancer cells have evolved to exist within a narrow range of chromosome missegregation rates that optimizes phenotypic heterogeneity and clonal survival. Departure from this range reduces clonal fitness and limits subclonal diversity. Mapping of the aneuploid fitness landscape reveals a highly favorable, commonly observed, near-triploid state onto which evolving diploid- and tetraploid-derived populations spontaneously converge, albeit at a much lower fitness cost for the latter. Finally, by analyzing 1,368 chromosomal translocation events in five human cancers, we find that karyotypic evolution also shapes chromosomal translocation patterns by selecting for more oncogenic derivative chromosomes. Thus, chromosomal instability can generate the heterogeneity required for Darwinian tumor evolution. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Computer analysis of digital sky surveys using citizen science and manual classification

NASA Astrophysics Data System (ADS)

Kuminski, Evan; Shamir, Lior

2015-01-01

As current and future digital sky surveys such as SDSS, LSST, DES, Pan-STARRS and Gaia create increasingly massive databases containing millions of galaxies, there is a growing need to be able to efficiently analyze these data. An effective way to do this is through manual analysis, however, this may be insufficient considering the extremely vast pipelines of astronomical images generated by the present and future surveys. Some efforts have been made to use citizen science to classify galaxies by their morphology on a larger scale than individual or small groups of scientists can. While these citizen science efforts such as Zooniverse have helped obtain reasonably accurate morphological information about large numbers of galaxies, they cannot scale to provide complete analysis of billions of galaxy images that will be collected by future ventures such as LSST. Since current forms of manual classification cannot scale to the masses of data collected by digital sky surveys, it is clear that in order to keep up with the growing databases some form of automation of the data analysis will be required, and will work either independently or in combination with human analysis such as citizen science. Here we describe a computer vision method that can automatically analyze galaxy images and deduce galaxy morphology. Experiments using Galaxy Zoo 2 data show that the performance of the method increases as the degree of agreement between the citizen scientists gets higher, providing a cleaner dataset. For several morphological features, such as the spirality of the galaxy, the algorithm agreed with the citizen scientists on around 95% of the samples. However, the method failed to analyze some of the morphological features such as the number of spiral arms, and provided accuracy of just ~36%.

Correlation of karyotype and immunophenotype in childhood acute lymphoblastic leukemia; experience at the National Cancer Institute, Cairo University, Egypt.

PubMed

Hamouda, Faiza; El-Sissy, Azza H; Radwan, Ashraf K; Hussein, Hany; Gadallah, Farida H; Al-Sharkawy, Nahla; Sedhom, Eman; Ebeid, Emad; Salem, Shereen I

2007-06-01

To identify chromosomal pattern among the major immunophenotypic subgroups in Egyptian children with ALL, and its correlation with clinical presentation and disease free survival. Cytogenetic and immunophenotypic analysis were done for all patients. Patients received ALL-PNCI-III/98 chemotherapy protocol used at NCI, Cairo University. The frequency of pseudodiploidy and normal karyotype in the whole group was 42.9% and 33.3% respectively. The frequency of pseudodiploidy was 36.8% in CALLA positive early pre B, 30.7% in pre B cases, 71.4% in T cell cases and 100% in mature B cell cases. At 12 months, DFS was 50% for pseudodiploid group having pre B phenotype, compared to 16.6% for pseudodiploid group with CALLA positive early pre B ALL. Sixteen percent of the studied cases showed T cell phenotype, 71.4% of them showed pseudodiploid karyotype, all of them had high risk features. Hyperdiploidy was found in 31.5% of CALLA positive early pre B cases and was associated with favorable prognostic features and DFS of 66.6% at 12 months. Hyperdiploidy of >50 chromosome represented 62.5% of hyperdipoid cases, 80% of them were CALLA positive early pre B ALL carrying good risk features. Fifty percent of normal karyotypic patients showed pre B phenotype, while 42.8% showed CALLA positive early pre B ALL. Their age, TLC, DFS, were almost comparable. CALLA early pre B phenotype has a positive impact on chromosomal pattern having best outcome among patients with hyperdiploidy. The Pseudodiploid karyotype carries a better outcome with pre B phenotype.

[The influence of immobilized fibronectin on karyotypic variability of two rat kangaroo kidney cell lines].

PubMed

Polianskaia, G G; Goriachaia, T S; Pinaev, G P

2007-01-01

The numerical and structural karyotypic variability has been investigated in "markerless" Rat kangaroo kidney cell lines NBL-3-17 and NBL-3-11 when cultivating on a fibronectin-coated surface. In cell line NBL-3-17, cultivated on the fibronectin-coated surface for 1, 2, 4 and 8 days, the character of cell distribution for the chromosome number has changed. These changes involve a significant decrease in frequency of cells with modal number of chromosomes, and an increase in frequency of cells with lower chromosomal number. Many new additional structural variants of the karyotype (SVK) appear. The observed alterations seem to be due preference adhesion of cells with lower chromosome number, disturbances of mitotic apparatus and selection of SVK, which are more adopted to changes in culture conditions. Detachment of cells from the fibronectin-coated surface, followed by 5 days cultivation on a hydrophilic surface restored control distribution. In cell line NBL-3-11, cultivated on the fibronectin-coated surface for 1, 2, 4 and 8 days, the character of numerical karyotypic variability did not change compared to control variants. In cell line NBL-3-17 the frequency of chromosomal aberrations under cultivation on the fibronectin-coated surface for 1, 2, 4 and 8 days did not change relative to control variants. In cell line NBL-3-11 the frequency of chromosomal aberrations under the same conditions significantly increases, mainly at the expence of chromosomal, chromatid breaks and dicentrics (telomeric association) relative to control variants. We discuss possible reasons of differences in the character of numerical and structural karyotypic variability between cell lines NBL-3-17 (hypotriploid) and NBL-3-11 (hypodiploid) under cultivation on fibronectin. The reasons of the observed interline karyotypic differences possibly consist in peculiarity of karyotypic structure of cell line NBL-3-11 and in the change of gene expression, namely in a dose of certain functioning

PCR-based karyotyping of Anopheles gambiae inversion 2Rj identifies the BAMAKO chromosomal form.

PubMed

Coulibaly, Mamadou B; Pombi, Marco; Caputo, Beniamino; Nwakanma, Davis; Jawara, Musa; Konate, Lassana; Dia, Ibrahima; Fofana, Abdrahamane; Kern, Marcia; Simard, Frédéric; Conway, David J; Petrarca, Vincenzo; della Torre, Alessandra; Traoré, Sékou; Besansky, Nora J

2007-10-01

The malaria vector Anopheles gambiae is polymorphic for chromosomal inversions on the right arm of chromosome 2 that segregate nonrandomly between assortatively mating populations in West Africa. One such inversion, 2Rj, is associated with the BAMAKO chromosomal form endemic to southern Mali and northern Guinea Conakry near the Niger River. Although it exploits a unique ecology and both molecular and chromosomal data suggest reduced gene flow between BAMAKO and other A. gambiae populations, no molecular markers exist to identify this form. To facilitate study of the BAMAKO form, a PCR assay for molecular karyotyping of 2Rj was developed based on sequences at the breakpoint junctions. The assay was extensively validated using more than 700 field specimens whose karyotypes were determined in parallel by cytogenetic and molecular methods. As inversion 2Rj also occurs in SAVANNA populations outside the geographic range of BAMAKO, samples were tested from Senegal, Cameroon and western Guinea Conakry as well as from Mali. In southern Mali, where 2Rj polymorphism in SAVANNA populations was very low and most of the 2Rj homozygotes were found in BAMAKO karyotypes, the molecular and cytogenetic methods were almost perfectly congruent. Elsewhere agreement between the methods was much poorer, as the molecular assay frequently misclassified 2Rj heterozygotes as 2R+j standard homozygotes. Molecular karyotyping of 2Rj is robust and accurate on 2R+j standard and 2Rj inverted homozygotes. Therefore, the proposed approach overcomes the lack of a rapid tool for identifying the BAMAKO form across developmental stages and sexes, and opens new perspectives for the study of BAMAKO ecology and behaviour. On the other hand, the method should not be applied for molecular karyotyping of j-carriers within the SAVANNA chromosomal form.

Nightscape Photography Reclaims the Natural Sky

NASA Astrophysics Data System (ADS)

Tafreshi, Babak

2015-08-01

Nightscape photos and timelapse videos, where the Earth & sky are framed together with an astronomical purpose, support the dark skies activities by improving public awareness. TWAN or The World at Night program (www.twanight.org) presents the world's best collection of such landscape astrophotos and aims to introduce the night sky as a part of nature, an essential element of our living environment besides being the astronomers lab. The nightscape images also present views of our civilizations landmarks, both natural and historic sites, against the night-time backdrop of stars, planets, and celestial events. In this context TWAN is a bridge between art, science and culture.TWAN images contribute to programs such as the Dark Sky Parks by the International Dark Sky Association or Starlight reserves by assisting local efforts in better illustrating their dark skies and by producing stunning images that not only educate the local people on their night sky heritage also communicate with the governments that are responsible to support the dark sky area.Since 2009 TWAN organizes the world's largest annual photo contest on nightscape imaging, in collaboration with the Dark Skies Awareness, National Optical Astronomy Observatory, and Astronomers Without Borders. The International Earth & Sky Photo Contest promotes the photography that documents the beauty of natural skies against the problem of light pollution. In 2014 the entries received from about 50 countries and the contest result news was widely published in the most popular sources internationally.*Babak A. Tafreshi is a photographer and science communicator. He is the creator of The World At Night program, and a contributing photographer to the National Geographic, Sky&Telescope magazine, and the European Southern Observatory. http://twanight.org/tafreshi

Diversity of chromosomal karyotypes in maize and its relatives.

PubMed

Albert, P S; Gao, Z; Danilova, T V; Birchler, J A

2010-07-01

Maize is a highly diverse species on the gene sequence level. With the recent development of methods to distinguish each of the 10 pairs of homologues in somatic root tip spreads, a wide collection of maize lines was subjected to karyotype analysis to serve as a reference for the community and to examine the spectrum of chromosomal features in the species. The core nested association mapping progenitor collection and additional selections of diversity lines were examined. Commonly used inbred lines were included in the analysis. The centromere 4 specific repeat and ribosomal RNA loci were invariant. The CentC centromere repeat exhibited extensive differences in quantity on any particular chromosome across lines. Knob heterochromatin was highly variable with locations at many sites in the genome. Lastly, representative examples from other species in the genus Zea (teosintes) were examined, which provide information on the evolution of chromosomal features. Copyright 2010 S. Karger AG, Basel.

The Aquarius Simulator and Cold-Sky Calibration

NASA Technical Reports Server (NTRS)

Le Vine, David M.; Dinnat, Emmanuel P.; Abraham, Saji; deMatthaeis, Paolo; Wentz, Frank J.

2011-01-01

A numerical simulator has been developed to study remote sensing from space in the spectral window at 1.413 GHz (L-band), and it has been used to optimize the cold-sky calibration (CSC) for the Aquarius radiometers. The celestial sky is a common cold reference in microwave radiometry. It is currently being used by the Soil Moisture and Ocean Salinity satellite, and it is planned that, after launch, the Aquarius/SAC-D observatory will periodically rotate to view "cold sky" as part of the calibration plan. Although radiation from the celestial sky is stable and relatively well known, it varies with location. In addition, radiation from the Earth below contributes to the measured signal through the antenna back lobes and also varies along the orbit. Both effects must be taken into account for a careful calibration. The numerical simulator has been used with the Aquarius configuration (antennas and orbit) to investigate these issues and determine optimum conditions for performing a CSC. This paper provides an overview of the simulator and the analysis leading to the selection of the optimum locations for a CSC.

A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity

PubMed Central

Brown, William R. A.; Liti, Gianni; Rosa, Carlos; James, Steve; Roberts, Ian; Robert, Vincent; Jolly, Neil; Tang, Wen; Baumann, Peter; Green, Carter; Schlegel, Kristina; Young, Jonathan; Hirchaud, Fabienne; Leek, Spencer; Thomas, Geraint; Blomberg, Anders; Warringer, Jonas

2011-01-01

The fission yeast Schizosaccharomyces pombe has been widely used to study eukaryotic cell biology, but almost all of this work has used derivatives of a single strain. We have studied 81 independent natural isolates and 3 designated laboratory strains of Schizosaccharomyces pombe. Schizosaccharomyces pombe varies significantly in size but shows only limited variation in proliferation in different environments compared with Saccharomyces cerevisiae. Nucleotide diversity, π, at a near neutral site, the central core of the centromere of chromosome II is approximately 0.7%. Approximately 20% of the isolates showed karyotypic rearrangements as detected by pulsed field gel electrophoresis and filter hybridization analysis. One translocation, found in 6 different isolates, including the type strain, has a geographically widespread distribution and a unique haplotype and may be a marker of an incipient speciation event. All of the other translocations are unique. Exploitation of this karyotypic diversity may cast new light on both the biology of telomeres and centromeres and on isolating mechanisms in single-celled eukaryotes. PMID:22384373

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing.

PubMed

Nguyen, Nga Thi Thuy; Vincens, Pierre; Roest Crollius, Hugues; Louis, Alexandra

2018-01-04

Since 2010, the Genomicus web server is available online at http://genomicus.biologie.ens.fr/genomicus. This graphical browser provides access to comparative genomic analyses in four different phyla (Vertebrate, Plants, Fungi, and non vertebrate Metazoans). Users can analyse genomic information from extant species, as well as ancestral gene content and gene order for vertebrates and flowering plants, in an integrated evolutionary context. New analyses and visualization tools have recently been implemented in Genomicus Vertebrate. Karyotype structures from several genomes can now be compared along an evolutionary pathway (Multi-KaryotypeView), and synteny blocks can be computed and visualized between any two genomes (PhylDiagView). © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Fetal karyotyping for chromosome abnormalities after an unexplained elevated maternal serum alpha-fetoprotein screening.

PubMed

Feuchtbaum, L B; Cunningham, G; Waller, D K; Lustig, L S; Tompkinson, D G; Hook, E B

1995-08-01

To study the chromosome abnormality rate among women with elevated levels of maternal serum alpha-fetoprotein (MSAFP) and the types of chromosome abnormalities in this population, and to compare this rate with reports in the literature and the rate observed in the general population. We studied 8097 women who chose to undergo amniocentesis and fetal karyotyping after having an elevated MSAFP test of 2.5 multiples of the median (MOM) or higher. All abnormal karyotypes were reviewed and grouped according to whether the elevated MSAFP value could be explained by a ventral wall or neural tube defect. The overall chromosome abnormality rate was 13.83 per 1000 amniocenteses. The rate in the "unexplained" group was 10.92 per 1000 amniocenteses. Just over half (53%) of the abnormal karyotypes were autosomal anomalies, and 47% were sex chromosome abnormalities. The autosomal aneuploidies observed most frequently were triploidy and trisomy 13. The sex chromosome abnormalities observed most frequently were the XXY and XYY karyotypes. Women who have unexplained elevated MSAFP values of 2.5 MOM or greater have a twofold increase in the rate of chromosome abnormalities in their fetuses compared with the general population (P < or = .001). This rate is consistent with other studies that used a 2.5 MOM cutoff. Studies that used a 2.0 MOM cutoff have reported chromosome abnormality rates that do not vary from general population estimates.

Karyotype differentiation of four Cestrum species (Solanaceae) revealed by fluorescent chromosome banding and FISH

PubMed Central

2009-01-01

The karyotypes of four South American species of Cestrum (C. capsulare,C. corymbosum,C. laevigatum and C. megalophylum) were studied using conventional staining, C-CMA/DAPI chromosome banding and FISH with 45S and 5S rDNA probes. The karyotypes showed a chromosome number of 2n = 2x = 16, with metacentric chromosomes, except for the eighth submeta- to acrocentric pair. Several types of heterochromatin were detected, which varied in size, number, distribution and base composition. The C-CMA+ bands and 45S rDNA were located predominantly in terminal regions. The C-CMA + /DAPI + bands appeared in interstitial and terminal regions, and the C-DAPI + bands were found in all chromosome regions. The 5S rDNA sites were observed on the long arm of pair 8 in all species except C. capsulare, where they were found in the paracentromeric region of the long arm of pair 4. The differences in band patterns among the species studied here, along with data from other nine species reported in the literature, suggest that the bands are dispersed in an equilocal and non-equilocal manner and that structural rearrangements can be responsible for internal karyotype diversification. However, it is important to point out that the structural changes involving repetitive segments did not culminate in substantial changes in the general karyotype structure concerning chromosome size and morphology. PMID:21637687

Acrania/encephalocele sequence (exencephaly) associated with 92,XXXX karyotype: early prenatal diagnosis at 9(+5) weeks by 3D transvaginal ultrasound and coelocentesis.

PubMed

Tonni, Gabriele; Ventura, Alessandro; Bonasoni, Maria Paola

2009-09-01

A 27-year-old pregnant woman was diagnosed by 3D transvaginal ultrasound as carrying a fetus of 9(+5) weeks gestation affected by acrania/encephalocele (exencephaly) sequence. A 2D transvaginal ultrasound-guided aspiration of 5 mL of extra-coelomic fluid was performed under cervical block before uterine suction. Conventional cytogenetic analysis demonstrated a 92,XXXX karyotype. Transvaginal 2D ultrasound-guided coelocentesis for rapid karyotyping can be proposed to women who are near to miscarriage or in cases where a prenatal ultrasound diagnosis of congenital anomaly is performed at an early stage of development. Genetic analysis can be performed using traditional cytogenetic analysis or can be aided by fluorescence in situ hybridization (FISH). Coelocentesis may become an integral part of first trimester armamentarium and may be clinically useful in the understanding of the pathogenesis of early prenatally diagnosed congenital anomalies.

eGSM: A extended Sky Model of Diffuse Radio Emission

NASA Astrophysics Data System (ADS)

Kim, Doyeon; Liu, Adrian; Switzer, Eric

2018-01-01

Both cosmic microwave background and 21cm cosmology observations must contend with astrophysical foreground contaminants in the form of diffuse radio emission. For precise cosmological measurements, these foregrounds must be accurately modeled over the entire sky Ideally, such full-sky models ought to be primarily motivated by observations. Yet in practice, these observations are limited, with data sets that are observed not only in a heterogenous fashion, but also over limited frequency ranges. Previously, the Global Sky Model (GSM) took some steps towards solving the problem of incomplete observational data by interpolating over multi-frequency maps using principal component analysis (PCA).In this poster, we present an extended version of GSM (called eGSM) that includes the following improvements: 1) better zero-level calibration 2) incorporation of non-uniform survey resolutions and sky coverage 3) the ability to quantify uncertainties in sky models 4) the ability to optimally select spectral models using Bayesian Evidence techniques.

Central neural coding of sky polarization in insects.

PubMed

Homberg, Uwe; Heinze, Stanley; Pfeiffer, Keram; Kinoshita, Michiyo; el Jundi, Basil

2011-03-12

Many animals rely on a sun compass for spatial orientation and long-range navigation. In addition to the Sun, insects also exploit the polarization pattern and chromatic gradient of the sky for estimating navigational directions. Analysis of polarization-vision pathways in locusts and crickets has shed first light on brain areas involved in sky compass orientation. Detection of sky polarization relies on specialized photoreceptor cells in a small dorsal rim area of the compound eye. Brain areas involved in polarization processing include parts of the lamina, medulla and lobula of the optic lobe and, in the central brain, the anterior optic tubercle, the lateral accessory lobe and the central complex. In the optic lobe, polarization sensitivity and contrast are enhanced through convergence and opponency. In the anterior optic tubercle, polarized-light signals are integrated with information on the chromatic contrast of the sky. Tubercle neurons combine responses to the UV/green contrast and e-vector orientation of the sky and compensate for diurnal changes of the celestial polarization pattern associated with changes in solar elevation. In the central complex, a topographic representation of e-vector tunings underlies the columnar organization and suggests that this brain area serves as an internal compass coding for spatial directions.

Central neural coding of sky polarization in insects

PubMed Central

Homberg, Uwe; Heinze, Stanley; Pfeiffer, Keram; Kinoshita, Michiyo; el Jundi, Basil

2011-01-01

Many animals rely on a sun compass for spatial orientation and long-range navigation. In addition to the Sun, insects also exploit the polarization pattern and chromatic gradient of the sky for estimating navigational directions. Analysis of polarization–vision pathways in locusts and crickets has shed first light on brain areas involved in sky compass orientation. Detection of sky polarization relies on specialized photoreceptor cells in a small dorsal rim area of the compound eye. Brain areas involved in polarization processing include parts of the lamina, medulla and lobula of the optic lobe and, in the central brain, the anterior optic tubercle, the lateral accessory lobe and the central complex. In the optic lobe, polarization sensitivity and contrast are enhanced through convergence and opponency. In the anterior optic tubercle, polarized-light signals are integrated with information on the chromatic contrast of the sky. Tubercle neurons combine responses to the UV/green contrast and e-vector orientation of the sky and compensate for diurnal changes of the celestial polarization pattern associated with changes in solar elevation. In the central complex, a topographic representation of e-vector tunings underlies the columnar organization and suggests that this brain area serves as an internal compass coding for spatial directions. PMID:21282171

Chromosome aberrations detected by conventional karyotyping using novel mitogens in chronic lymphocytic leukemia with "normal" FISH: correlations with clinicobiologic parameters.

PubMed

Rigolin, Gian Matteo; Cibien, Francesca; Martinelli, Sara; Formigaro, Luca; Rizzotto, Lara; Tammiso, Elisa; Saccenti, Elena; Bardi, Antonella; Cavazzini, Francesco; Ciccone, Maria; Nichele, Ilaria; Pizzolo, Giovanni; Zaja, Francesco; Fanin, Renato; Galieni, Piero; Dalsass, Alessia; Mestichelli, Francesca; Testa, Nicoletta; Negrini, Massimo; Cuneo, Antonio

2012-03-08

It is unclear whether karyotype aberrations that occur in regions uncovered by the standard fluorescence in situ hybridization (FISH) panel have prognostic relevance in chronic lymphocytic leukemia (CLL). We evaluated the significance of karyotypic aberrations in a learning cohort (LC; n = 64) and a validation cohort (VC; n = 84) of patients with chronic lymphocytic leukemia with "normal" FISH. An abnormal karyotype was found in 21.5% and 35.7% of cases in the LC and VC, respectively, and was associated with a lower immunophenotypic score (P = .030 in the LC, P = .035 in the VC), advanced stage (P = .040 in the VC), and need for treatment (P = .002 in the LC, P = < .0001 in the VC). The abnormal karyotype correlated with shorter time to first treatment and shorter survival in both the LC and the VC, representing the strongest prognostic parameter. In patients with chronic lymphocytic leukemia with normal FISH, karyotypic aberrations by conventional cytogenetics with novel mitogens identify a subset of cases with adverse prognostic features.

The Fermi All-Sky Variability Analysis: A List of Flaring Gamma-Ray Sources and the Search for Transients in our Galaxy

NASA Technical Reports Server (NTRS)

Ackermann, M.; Ajello, M.; Albert, A.; Allafort, A.; Antolini, E.; Baldini, L.; Ballet, J.; Barbiellini, G; Bastieri, D.; Bechtol, K.;

Tropical rainforest response to marine sky brightening climate engineering

NASA Astrophysics Data System (ADS)

Muri, Helene; Niemeier, Ulrike; Kristjánsson, Jón Egill

2015-04-01

Tropical forests represent a major atmospheric carbon dioxide sink. Here the gross primary productivity (GPP) response of tropical rainforests to climate engineering via marine sky brightening under a future scenario is investigated in three Earth system models. The model response is diverse, and in two of the three models, the tropical GPP shows a decrease from the marine sky brightening climate engineering. Partial correlation analysis indicates precipitation to be important in one of those models, while precipitation and temperature are limiting factors in the other. One model experiences a reversal of its Amazon dieback under marine sky brightening. There, the strongest partial correlation of GPP is to temperature and incoming solar radiation at the surface. Carbon fertilization provides a higher future tropical rainforest GPP overall, both with and without climate engineering. Salt damage to plants and soils could be an important aspect of marine sky brightening.

Under Summer Skies

ERIC Educational Resources Information Center

Texley, Juliana

2009-01-01

There's no better way to celebrate 2009, the International Year of Astronomy, than by curling up with a good book under summer skies. To every civilization, in every age, the skies inspired imagination and scientific inquiry. There's no better place to start your summer reading than under their influence. Here are a few selections identified by…

The LWA1 Low Frequency Sky Survey

NASA Astrophysics Data System (ADS)

Dowell, Jayce; Taylor, Gregory B.; LWA Collaboration

2015-01-01

The LWA1 Low Frequency Sky Survey is a survey of the sky visible from the first station of the Long Wavelength Array (LWA1) across the frequency range of 35 to 80 MHz. The primary motivation behind this effort is to improve our understanding of the sky at these frequencies. In particular, an understanding of the low frequency foreground emission is necessary for work on detecting the epoch of reionization and the cosmic dark ages where the foreground signal dwarfs the expected redshifted HI signal by many orders of magnitude (Pritchard & Loeb 2012, Rep. Prog. Phys., 75, 086901). The leading model for the sky in the frequency range of 20 to 200 MHz is the Global Sky Model (GSM) by de Oliveria-Costas et al. (2008, MNRAS, 288, 247). This model is based upon a principle component analysis of 11 sky maps ranging in frequency from 10 MHz to 94 GHz. Of these 11 maps, only four are below 1 GHz; 10 MHz from Caswell (1976, MNRAS, 177, 601), 22 MHz from Roger et al. (1999, A&AS, 137, 7), 45 MHz from Alvarez et al. (1997, A&AS, 124, 315) and Maeda et al. (1999, A&AS, 140, 145), and 408 MHz from Haslam et al. (1982, A&AS, 47, 1). Thus, within this model, the region of interest to both cosmic dawn and the epoch of reionization is largely unconstrained based on the available survey data, and are also limited in terms of the spatial coverage and calibration. A self-consistent collection of maps is necessary for both our understanding of the sky and the removal of the foregrounds that mask the redshifted 21-cm signal.We present the current state of the survey and discuss the imaging and calibration challenges faced by dipole arrays that are capable of imaging nearly 2π steradians of sky simultaneously over a large fractional bandwidth.Construction of the LWA has been supported by the Office of Naval Research under Contract N00014-07-C-0147. Support for operations and continuing development of the LWA1 is provided by the National Science Foundation under grants AST-1139963 and AST

Subchromosomal karyotype evolution in Equidae.

PubMed

Musilova, P; Kubickova, S; Vahala, J; Rubes, J

2013-04-01

Equidae is a small family which comprises horses, African and Asiatic asses, and zebras. Despite equids having diverged quite recently, their karyotypes underwent rapid evolution which resulted in extensive differences among chromosome complements in respective species. Comparative mapping using whole-chromosome painting probes delineated genome-wide chromosome homologies among extant equids, enabling us to trace chromosome rearrangements that occurred during evolution. In the present study, we performed subchromosomal comparative mapping among seven Equidae species, representing the whole family. Region-specific painting and bacterial artificial chromosome probes were used to determine the orientation of evolutionarily conserved segments with respect to centromere positions. This allowed assessment of the configuration of all fusions occurring during the evolution of Equidae, as well as revealing discrepancies in centromere location caused by centromere repositioning or inversions. Our results indicate that the prevailing type of fusion in Equidae is centric fusion. Tandem fusions of the type telomere-telomere occur almost exclusively in the karyotype of Hartmann's zebra and are characteristic of this species' evolution. We revealed inversions in segments homologous to horse chromosomes 3p/10p and 13 in zebras and confirmed inversions in segments 4/31 in African ass, 7 in horse and 8p/20 in zebras. Furthermore, our mapping results suggested that centromere repositioning events occurred in segments homologous to horse chromosomes 7, 8q, 10p and 19 in the African ass and an element homologous to horse chromosome 16 in Asiatic asses. Centromere repositioning in chromosome 1 resulted in three different chromosome types occurring in extant species. Heterozygosity of the centromere position of this chromosome was observed in the kiang. Other subtle changes in centromere position were described in several evolutionary conserved chromosomal segments, suggesting that tiny

Karyotype Plasticity in Crickets: Numerical, Morphological, and Nucleolar Organizer Region Distribution Pattern of Anurogryllus sp.

PubMed Central

Cristina Schneider, Marielle; Ariza Zacaro, Adilson; Ferreira, Amilton; Maria Cella, Doralice

2010-01-01

Within the Orthopteran species, those of the suborder Ensifera have been rarely studied from the cytogenetic point of view, mainly due to the difficulties for taxonomic identification of its species. The Gryllidae is the second largest family of this suborder and possesses some genera, such as Anurogryllus, that occur only on the American continents. The aim of this work was to determine the karyotype characteristics, the meiotic chromosome behaviour, and the nucleolar organizer region (NOR) pattern of Anurogryllus sp (Orthoptera: Gryllidae). In the analyzed sample, high levels of numerical, morphological, and NORs polymorphisms were detected. Within five distinct karyotypes that were found, the basic karyotype of Anurogryllus sp. showed 2n(♂) = 22 + X0 with acrocentric autosomes and a metacentric X sex chromosome; furthermore, a conspicuous secondary constriction related to the NOR was present along the entire short arm on pair 5. The other four types of karyotypes arose from centric fusions between elements of pairs 1/3, 2/6, 4/7 and a NOR partial translocation from pair 5 onto the long arm terminal region of one element of the fused pair 2/6. Such intraspecific variability and the consequences of high levels of polymorphism are discussed, leading to conjectures about the mechanisms that led to these chromosome rearrangements. PMID:20673072

Chromosome Mis-segregation Generates Cell-Cycle-Arrested Cells with Complex Karyotypes that Are Eliminated by the Immune System.

PubMed

Santaguida, Stefano; Richardson, Amelia; Iyer, Divya Ramalingam; M'Saad, Ons; Zasadil, Lauren; Knouse, Kristin A; Wong, Yao Liang; Rhind, Nicholas; Desai, Arshad; Amon, Angelika

2017-06-19

Aneuploidy, a state of karyotype imbalance, is a hallmark of cancer. Changes in chromosome copy number have been proposed to drive disease by modulating the dosage of cancer driver genes and by promoting cancer genome evolution. Given the potential of cells with abnormal karyotypes to become cancerous, do pathways that limit the prevalence of such cells exist? By investigating the immediate consequences of aneuploidy on cell physiology, we identified mechanisms that eliminate aneuploid cells. We find that chromosome mis-segregation leads to further genomic instability that ultimately causes cell-cycle arrest. We further show that cells with complex karyotypes exhibit features of senescence and produce pro-inflammatory signals that promote their clearance by the immune system. We propose that cells with abnormal karyotypes generate a signal for their own elimination that may serve as a means for cancer cell immunosurveillance. Copyright © 2017 Elsevier Inc. All rights reserved.

Predicting the sky from 30 MHz to 800 GHz: the extended Global Sky Model

NASA Astrophysics Data System (ADS)

Liu, Adrian

We propose to construct the extended Global Sky Model (eGSM), a software package and associated data products that are capable of generating maps of the sky at any frequency within a broad range (30 MHz to 800 GHz). The eGSM is constructed from archival data, and its outputs will include not only "best estimate" sky maps, but also accurate error bars and the ability to generate random realizations of missing modes in the input data. Such views of the sky are crucial in the practice of precision cosmology, where our ability to constrain cosmological parameters and detect new phenomena (such as B-mode signatures from primordial gravitational waves, or spectral distortions of the Cosmic Microwave Background; CMB) rests crucially on our ability to remove systematic foreground contamination. Doing so requires empirical measurements of the foreground sky brightness (such as that arising from Galactic synchrotron radiation, among other sources), which are typically performed only at select narrow wavelength ranges. We aim to transcend traditional wavelength limits by optimally combining existing data to provide a comprehensive view of the foreground sky at any frequency within the broad range of 30 MHz to 800 GHz. Previous efforts to interpolate between multi-frequency maps resulted in the Global Sky Model (GSM) of de Oliveira-Costa et al. (2008), a software package that outputs foreground maps at any frequency of the user's choosing between 10 MHz and 100 GHz. However, the GSM has a number of shortcomings. First and foremost, the GSM does not include the latest archival data from the Planck satellite. Multi-frequency models depend crucially on data from Planck, WMAP, and COBE to provide high-frequency "anchor" maps. Another crucial shortcoming is the lack of error bars in the output maps. Finally, the GSM is only able to predict temperature (i.e., total intensity) maps, and not polarization information. With the recent release of Planck's polarized data products, the

The Mitochondrial Genome of the Guanaco Louse, Microthoracius praelongiceps: Insights into the Ancestral Mitochondrial Karyotype of Sucking Lice (Anoplura, Insecta)

PubMed Central

Li, Hu; Barker, Stephen C.

2017-01-01

Fragmented mitochondrial (mt) genomes have been reported in 11 species of sucking lice (suborder Anoplura) that infest humans, chimpanzees, pigs, horses, and rodents. There is substantial variation among these lice in mt karyotype: the number of minichromosomes of a species ranges from 9 to 20; the number of genes in a minichromosome ranges from 1 to 8; gene arrangement in a minichromosome differs between species, even in the same genus. We sequenced the mt genome of the guanaco louse, Microthoracius praelongiceps, to help establish the ancestral mt karyotype for sucking lice and understand how fragmented mt genomes evolved. The guanaco louse has 12 mt minichromosomes; each minichromosome has 2–5 genes and a non-coding region. The guanaco louse shares many features with rodent lice in mt karyotype, more than with other sucking lice. The guanaco louse, however, is more closely related phylogenetically to human lice, chimpanzee lice, pig lice, and horse lice than to rodent lice. By parsimony analysis of shared features in mt karyotype, we infer that the most recent common ancestor of sucking lice, which lived ∼75 Ma, had 11 minichromosomes; each minichromosome had 1–6 genes and a non-coding region. As sucking lice diverged, split of mt minichromosomes occurred many times in the lineages leading to the lice of humans, chimpanzees, and rodents whereas merger of minichromosomes occurred in the lineage leading to the lice of pigs and horses. Together, splits and mergers of minichromosomes created a very complex and dynamic mt genome organization in the sucking lice. PMID:28164215

Sky Subtraction with Fiber-Fed Spectrograph

NASA Astrophysics Data System (ADS)

Rodrigues, Myriam

2017-09-01

"Historically, fiber-fed spectrographs had been deemed inadequate for the observation of faint targets, mainly because of the difficulty to achieve high accuracy on the sky subtraction. The impossibility to sample the sky in the immediate vicinity of the target in fiber instruments has led to a commonly held view that a multi-object fibre spectrograph cannot achieve an accurate sky subtraction under 1% contrary to their slit counterpart. The next generation of multi-objects spectrograph at the VLT (MOONS) and the planed MOS for the E-ELT (MOSAIC) are fiber-fed instruments, and are aimed to observed targets fainter than the sky continuum level. In this talk, I will present the state-of-art on sky subtraction strategies and data reduction algorithm specifically developed for fiber-fed spectrographs. I will also present the main results of an observational campaign to better characterise the sky spatial and temporal variations ( in particular the continuum and faint sky lines)."

Adnyamathanha Night Skies

NASA Astrophysics Data System (ADS)

Curnow, Paul

2009-06-01

Aboriginal Australians have been viewing the night skies of Australia for some 45,000 years and possibly much longer. During this time they have been able to develop a complex knowledge of the night sky, the terrestrial environment in addition to seasonal changes. However, few of us in contemporary society have an in-depth knowledge of the nightly waltz of stars above.

Karyotypic evolution of ribosomal sites in buffalo subspecies and their crossbreed

PubMed Central

Degrandi, Tiago Marafiga; Pita, Sebastian; Panzera, Yanina; de Oliveira, Edivaldo Herculano C.; Marques, José Ribamar Felipe; Figueiró, Marivaldo Rodrigues; Marques, Larissa Coêlho; Vinadé, Lucia; Gunski, Ricardo José; Garnero, Analía Del Valle

2014-01-01

Domestic buffaloes are divided into two group based on cytogenetic characteristics and habitats: the “river buffaloes” with 2n = 50 and the “swamp buffaloes”, 2n = 48. Nevertheless, their hybrids are viable, fertile and identified by a 2n = 49. In order to have a better characterization of these different cytotypes of buffaloes, and considering that NOR-bearing chromosomes are involved in the rearrangements responsible for the karyotypic differences, we applied silver staining (Ag-NOR) and performed fluorescent in situ hybridization (FISH) experiments using 18S rDNA as probe. Metaphases were obtained through blood lymphocyte culture of 21 individuals, including river, swamp and hybrid cytotypes. Ag-NOR staining revealed active NORs on six chromosome pairs (3p, 4p, 6, 21, 23, 24) in the river buffaloes, whereas the swamp buffaloes presented only five NOR-bearing pairs (4p, 6, 20, 22, 23). The F1 cross-breed had 11 chromosomes with active NORs, indicating expression of both parental chromosomes. FISH analysis confirmed the numerical divergence identified with Ag-NOR. This result is explained by the loss of the NOR located on chromosome 4p in the river buffalo, which is involved in the tandem fusion with chromosome 9 in this subspecies. A comparison with the ancestral cattle karyotype suggests that the NOR found on the 3p of the river buffalo may have originated from a duplication of ribosomal genes, resulting in the formation of new NOR sites in this subspecies. PMID:25071402

Far infrared all-sky survey

NASA Technical Reports Server (NTRS)

Richards, Paul L.

1991-01-01

An all-sky survey at submillimeter waves is examined. Far-infrared all-sky surveys were performed using high-thoroughput bolometric detectors from a one-meter balloon telescope. Based on the large-bodied experience obtained with the original all-sky survey telescope, a number of radically different approaches were implemented. Continued balloon measurements of the spectrum of the cosmic microwave background were performed.

All-Sky Infrared Survey

NASA Image and Video Library

2009-11-17

This infrared view of the whole sky highlights the flat plane of our Milky Way galaxy line across middle of image. NASA WISE, will take a similar infrared census of the whole sky, only with much improved resolution and sensitivity.

THE FERMI ALL-SKY VARIABILITY ANALYSIS: A LIST OF FLARING GAMMA-RAY SOURCES AND THE SEARCH FOR TRANSIENTS IN OUR GALAXY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ackermann, M.; Ajello, M.; Albert, A.

2013-07-01

In this paper, we present the Fermi All-sky Variability Analysis (FAVA), a tool to systematically study the variability of the gamma-ray sky measured by the Large Area Telescope on board the Fermi Gamma-ray Space Telescope. For each direction on the sky, FAVA compares the number of gamma-rays observed in a given time window to the number of gamma-rays expected for the average emission detected from that direction. This method is used in weekly time intervals to derive a list of 215 flaring gamma-ray sources. We proceed to discuss the 27 sources found at Galactic latitudes smaller than 10 Degree-Sign andmore » show that, despite their low latitudes, most of them are likely of extragalactic origin.« less

Chromosome evolution in kangaroos (Marsupialia: Macropodidae): cross species chromosome painting between the tammar wallaby and rock wallaby spp. with the 2n = 22 ancestral macropodid karyotype.

PubMed

O'Neill, R J; Eldridge, M D; Toder, R; Ferguson-Smith, M A; O'Brien, P C; Graves, J A

1999-06-01

Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is exceptional. We used cross species chromosome painting to examine the chromosome evolution between the tammar wallaby (2n = 16) and three 2n = 22 rock wallaby species groups with the putative ancestral karyotype. Hybridization of chromosome paints prepared from flow sorted chromosomes of the tammar wallaby to Petrogale spp., showed that this ancestral karyotype is largely conserved among 2n = 22 rock wallaby species, and confirmed the identity of ancestral chromosomes which fused to produce the bi-armed chromosomes of the 2n = 16 tammar wallaby. These results illustrate the fission-fusion process of karyotype evolution characteristic of the kangaroo group.

Achondroplasia with 47, XXY karyotype: a case report of the neonatal diagnosis of an extremely unusual association.

PubMed

Ros-Pérez, Purificación; Regidor, Francisco J; Colino, Esmeralda; Martínez-Payo, Cristina; Barroso, Eva; Heath, Karen E

2012-06-29

The association of achondroplasia and Klinefelter syndrome is extremely rare. To date, five cases have been previously reported, all of them diagnosed beyond the postnatal period, and only one was molecularly characterized. We describe the first case of this unusual association diagnosed in the neonatal period, the clinical findings and the molecular studies undertaken. The boy was born at term with clinical and radiological features indicating the diagnosis of achondroplasia or hypochondroplasia combined with the prenatal karyotype of Klinefelter syndrome (47,XXY). Neonatal FGFR3 mutation screening showed that the newborn was heterozygous for the classic achondroplasia G340R mutation. Microsatellite marker analysis showed that the sex chromosome aneuploidy had arisen from a non-disjunction error in paternal meiosis I, with a recombination event in the pseudoautosomal region 1 (PAR1). Specific mutation analysis is appropriate to confirm the clinical diagnosis of achondroplasia for appropriate diagnosis, prognosis, and genetic counseling, especially when the karyotype does not explain the abnormal prenatal sonographic findings. In the present case, a recombination event was observed in the PAR1 region, although recombinational events in paternally derived Klinefelter syndrome cases are much rarer than expected.

Achondroplasia with 47, xxy karyotype: a case report of the neonatal diagnosis of an extremely unusual association

PubMed Central

2012-01-01

Background The association of achondroplasia and Klinefelter syndrome is extremely rare. To date, five cases have been previously reported, all of them diagnosed beyond the postnatal period, and only one was molecularly characterized. We describe the first case of this unusual association diagnosed in the neonatal period, the clinical findings and the molecular studies undertaken. Case presentation The boy was born at term with clinical and radiological features indicating the diagnosis of achondroplasia or hypochondroplasia combined with the prenatal karyotype of Klinefelter syndrome (47,XXY). Neonatal FGFR3 mutation screening showed that the newborn was heterozygous for the classic achondroplasia G340R mutation. Microsatellite marker analysis showed that the sex chromosome aneuploidy had arisen from a non-disjunction error in paternal meiosis I, with a recombination event in the pseudoautosomal region 1 (PAR1). Conclusion Specific mutation analysis is appropriate to confirm the clinical diagnosis of achondroplasia for appropriate diagnosis, prognosis, and genetic counseling, especially when the karyotype does not explain the abnormal prenatal sonographic findings. In the present case, a recombination event was observed in the PAR1 region, although recombinational events in paternally derived Klinefelter syndrome cases are much rarer than expected. PMID:22747519

Dark-Skies Awareness

NASA Astrophysics Data System (ADS)

Walker, Constance E.

2009-05-01

The arc of the Milky Way seen from a truly dark location is part of our planet's natural heritage. More than one fifth of the world population, two thirds of the United States population and one half of the European Union population have already lost naked eye visibility of the Milky Way. This loss, caused by light pollution, is a serious and growing issue that impacts astronomical research, the economy, ecology, energy conservation, human health, public safety and our shared ability to see the night sky. For this reason, "Dark Skies” is a cornerstone project of the International Year of Astronomy. Its goal is to raise public awareness of the impact of artificial lighting on local environments by getting people worldwide involved in a variety of programs that: 1. Teach about dark skies using new technology (e.g., an activity-based planetarium show on DVD, podcasting, social networking on Facebook and MySpace, a Second Life presence) 2. Provide thematic events on light pollution at star parties and observatory open houses (Dark Skies Discovery Sites, Nights in the (National) Parks, Sidewalk Astronomy) 3. Organize events in the arts (e.g., a photography contest) 4. Involve citizen-scientists in naked-eye and digital-meter star hunting programs (e.g., GLOBE at Night, "How Many Stars?", the Great World Wide Star Count and the radio frequency interference equivalent: "Quiet Skies") and 5. Raise awareness about the link between light pollution and public health, economic issues, ecological consequences, energy conservation, safety and security, and astronomy (e.g., The Starlight Initiative, World Night in Defense of Starlight, International Dark Sky Week, International Dark-Sky Communities, Earth Hour, The Great Switch Out, a traveling exhibit, downloadable posters and brochures). The presentation will provide an update, describe how people can become involved and take a look ahead at the program's sustainability. For more information, visit www.darkskiesawareness.org.

The Mugil curema species complex (Pisces, Mugilidae): a new karyotype for the Pacific white mullet mitochondrial lineage

PubMed Central

Nirchio, Mauro; Oliveira, Claudio; Siccha-Ramirez, Zoila R.; de Sene, Viviani F.; Sola, Luciana; Milana, Valentina; Rossi, Anna Rita

2017-01-01

Abstract Recent molecular phylogenetic analyses have shown that the Mugil curema Valenciennes, 1836 species complex includes M. incilis Hancock, 1830, M. thoburni (Jordan & Starks, 1896) and at least four “M. curema” mitochondrial lineages, considered as cryptic species. The cytogenetic data on some representatives of the species complex have shown a high cytogenetic diversity. This research reports the results of cytogenetic and molecular analyses of white mullet collected in Ecuador. The analyzed specimens were molecularly assigned to the Mugil sp. O, the putative cryptic species present in the Pacific Ocean and showed a 2n = 46 karyotype, which is composed of 2 metacentric and 44 subtelocentric/acrocentric chromosomes. This karyotype is different from the one described for M. incilis (2n = 48) and from those of the two western Atlantic lineages Mugil curema (2n = 28), and Mugil margaritae (2n = 24). Data suggest the need for a morphological analysis to assign a species name to this Pacific lineage. PMID:28919961

The Mugil curema species complex (Pisces, Mugilidae): a new karyotype for the Pacific white mullet mitochondrial lineage.

PubMed

Nirchio, Mauro; Oliveira, Claudio; Siccha-Ramirez, Zoila R; de Sene, Viviani F; Sola, Luciana; Milana, Valentina; Rossi, Anna Rita

2017-01-01

Recent molecular phylogenetic analyses have shown that the Mugil curema Valenciennes, 1836 species complex includes M. incilis Hancock, 1830, M. thoburni (Jordan & Starks, 1896) and at least four " M. curema " mitochondrial lineages, considered as cryptic species. The cytogenetic data on some representatives of the species complex have shown a high cytogenetic diversity. This research reports the results of cytogenetic and molecular analyses of white mullet collected in Ecuador. The analyzed specimens were molecularly assigned to the Mugil sp. O, the putative cryptic species present in the Pacific Ocean and showed a 2n = 46 karyotype, which is composed of 2 metacentric and 44 subtelocentric/acrocentric chromosomes. This karyotype is different from the one described for M. incilis (2n = 48) and from those of the two western Atlantic lineages Mugil curema (2n = 28), and Mugil margaritae (2n = 24). Data suggest the need for a morphological analysis to assign a species name to this Pacific lineage.

Uncertainties of parameterized surface downward clear-sky shortwave and all-sky longwave radiation.

NASA Astrophysics Data System (ADS)

Gubler, S.; Gruber, S.; Purves, R. S.

2012-06-01

As many environmental models rely on simulating the energy balance at the Earth's surface based on parameterized radiative fluxes, knowledge of the inherent model uncertainties is important. In this study we evaluate one parameterization of clear-sky direct, diffuse and global shortwave downward radiation (SDR) and diverse parameterizations of clear-sky and all-sky longwave downward radiation (LDR). In a first step, SDR is estimated based on measured input variables and estimated atmospheric parameters for hourly time steps during the years 1996 to 2008. Model behaviour is validated using the high quality measurements of six Alpine Surface Radiation Budget (ASRB) stations in Switzerland covering different elevations, and measurements of the Swiss Alpine Climate Radiation Monitoring network (SACRaM) in Payerne. In a next step, twelve clear-sky LDR parameterizations are calibrated using the ASRB measurements. One of the best performing parameterizations is elected to estimate all-sky LDR, where cloud transmissivity is estimated using measured and modeled global SDR during daytime. In a last step, the performance of several interpolation methods is evaluated to determine the cloud transmissivity in the night. We show that clear-sky direct, diffuse and global SDR is adequately represented by the model when using measurements of the atmospheric parameters precipitable water and aerosol content at Payerne. If the atmospheric parameters are estimated and used as a fix value, the relative mean bias deviance (MBD) and the relative root mean squared deviance (RMSD) of the clear-sky global SDR scatter between between -2 and 5%, and 7 and 13% within the six locations. The small errors in clear-sky global SDR can be attributed to compensating effects of modeled direct and diffuse SDR since an overestimation of aerosol content in the atmosphere results in underestimating the direct, but overestimating the diffuse SDR. Calibration of LDR parameterizations to local conditions

Karyotype Evolution in Birds: From Conventional Staining to Chromosome Painting.

PubMed

Kretschmer, Rafael; Ferguson-Smith, Malcolm A; de Oliveira, Edivaldo Herculano Correa

2018-03-27

In the last few decades, there have been great efforts to reconstruct the phylogeny of Neoaves based mainly on DNA sequencing. Despite the importance of karyotype data in phylogenetic studies, especially with the advent of fluorescence in situ hybridization (FISH) techniques using different types of probes, the use of chromosomal data to clarify phylogenetic proposals is still minimal. Additionally, comparative chromosome painting in birds is restricted to a few orders, while in mammals, for example, virtually all orders have already been analyzed using this method. Most reports are based on comparisons using Gallus gallus probes, and only a small number of species have been analyzed with more informative sets of probes, such as those from Leucopternis albicollis and Gyps fulvus , which show ancestral macrochromosomes rearranged in alternative patterns. Despite this, it is appropriate to review the available cytogenetic information and possible phylogenetic conclusions. In this report, the authors gather both classical and molecular cytogenetic data and describe some interesting and unique characteristics of karyotype evolution in birds.

Molecular Karyotype of the White Rot Fungus Pleurotus ostreatus

PubMed Central

Larraya, Luis M.; Pérez, Gumer; Peñas, María M.; Baars, Johan J. P.; Mikosch, Thomas S. P.; Pisabarro, Antonio G.; Ramírez, Lucía

1999-01-01

The white rot fungus Pleurotus ostreatus is an edible basidiomycete with increasing agricultural and biotechnological importance. Genetic manipulation and breeding of this organism are restricted because of the lack of knowledge about its genomic structure. In this study, we analyzed the genomic constitution of P. ostreatus by using pulsed-field gel electrophoresis optimized for the separation of its chromosomes. We have determined that it contains 11 pairs of chromosomes with sizes ranging from 1.4 to 4.7 Mbp. In addition to chromosome separation, the use of single-copy DNA probes allowed us to resolve the ambiguities caused by chromosome comigration. When the two nuclei present in the dikaryon were separated by protoplasting, analysis of their karyotypes revealed length polymorphisms affecting various chromosomes. This is, to our knowledge, the clearest chromosome separation available for this species. PMID:10427028

Light pollution: Assessment of sky glow on two dark sky regions of Portugal.

PubMed

Lima, Raul Cerveira; Pinto da Cunha, José; Peixinho, Nuno

2016-01-01

Artificial light at night (ALAN), producing light pollution (LP), is not a matter restricted to astronomy anymore. Light is part of modern societies and, as a consequence, the natural cycle day-night (bright-dark) has been interrupted in a large segment of the global population. There is increasing evidence that exposure to certain types of light at night and beyond threshold levels may produce hazardous effects to humans and the environment. The concept of "dark skies reserves" is a step forward in order to preserve the night sky and a means of enhancing public awareness of the problem of spread of light pollution worldwide. The aim of this study was to assess the skyglow at two sites in Portugal, the Peneda-Gerês National Park (PNPG) and the region now known as Dark Sky Alqueva Reserve. The latter site was classified as a "Starlight Tourism Destination" by the Starlight Foundation (the first in the world to achieve this classification) following a series of night sky measurements in situ described herein. The measurements at PNPG also contributed to the new set of regulations concerning light pollution at this national park. This study presents the first in situ systematic measurements of night sky brightness, showing that at the two sites the skies are mostly in levels 3 to 4 of the Bortle 9-level scale (with level 1 being the best achievable). The results indicate that the sources of light pollution and skyglow can be attributed predominantly to contamination from nearby urban regions.

Chapter 28: Theory SkyNode

NASA Astrophysics Data System (ADS)

Wagner, R.; Norman, M. L.

Here we present a working example of a Basic SkyNode serving theoretical data. The data is taken from the Simulated Cluster Archive (SCA), a set of simulated X-ray clusters, where each cluster was computed using four different physics models. The LCA Theory SkyNode (LCATheory) tables contain columns of the integrated physical properties of the clusters at various redshifts. The ease of setting up a Theory SkyNode is an important result, because it represents a clear way to present theory data to the Virtual Observatory. Also, our Theory SkyNode provides a prototype for additional simulated object catalogs, which will be created from other simulations by our group, and hopefully others.

The Color of the Sky

NASA Astrophysics Data System (ADS)

Zagury, Frederic

2012-10-01

The color of the sky in day-time and at twilight is studied by means of spectroscopy, which provides an unambiguous way to understand and quantify why a sky is blue, pink, or red. The colors a daylight sky can take primarily owe to Rayleigh extinction and ozone absorption. Spectra of the sky illuminated by the sun can generally be represented by a generic analytical expression which involves the Rayleigh function R ≈ 1/λ^4 e(?a/λ^4), ozone absorption, and, to a lesser extend, aerosol extinction. This study is based on a representative sample of spectra selected from a few hundred observations taken in different places, times, and dates, with a portable fiber spectrometer.

Karyotypic variation in Rhinophylla pumilio Peters, 1865 and comparative analysis with representatives of two subfamilies of Phyllostomidae (Chiroptera)

PubMed Central

Gomes, Anderson José Baia; Nagamachi, Cleusa Yoshiko; Rodrigues, Luís Reginaldo Ribeiro; Farias, Solange Gomes; Rissino, Jorge Dores; Pieczarka, Julio Cesar

2012-01-01

Abstract The family Phyllostomidae belongs to the most abundant and diverse group of bats in the Neotropics with more morphological traits variation at the family level than any other group within mammals. In this work, we present data of chromosome banding (G, C and Ag-NOR) and Fluorescence In Situ Hybridization (FISH) for representatives of Rhinophylla pumilio Peters, 1865 collected in four states of Brazil (Amazonas, Bahia, Mato Grosso and Pará). Two karyomorphs were found in this species: 2n=34, FN=64 in populations from western Pará and Mato Grosso states and 2n=34, FN=62 from Amazonas, Bahia, and northeastern Pará and Marajó Island (northern). Difference in the Fundamental Number is determined by variation in the size of the Nucleolar Organizer Region (NOR) accompanied with heterochromatin on chromosomes of pair 16 or, alternatively, a pericentric inversion. The C-banding technique detected constitutive heterochromatin in the centromeric regions of all chromosomes and on the distal part of the long arm of pair 15 of specimens from all localities. FISH with a DNA telomeric probe did not show any interstitial sequence, and an 18S rDNA probe and silver staining revealed the presence of NOR in the long arm of the pair 15, associated with heterochromatin, and in the short arm of the pair 16 for all specimens. The intra-specific analysis using chromosome banding did not show any significant difference between the samples. The comparative analyses using G-banding have shown that nearly all chromosomes of Rhinophylla pumilio were conserved in the chromosome complements of Glossophaga soricina Pallas, 1766, Phyllostomus hastatus Pallas, 1767, Phyllostomus discolor Wagner, 1843 and Mimon crenulatum Geoffroy, 1801, with a single chromosomal pair unique to Rhinophylla pumilio (pair 15). However, two chromosomes of Mimon crenulatum are polymorphic for two independent pericentric inversions. The karyotype with 2n=34, NF=62 is probably the ancestral one for the other

Education for Life in the Sky.

ERIC Educational Resources Information Center

Roth, Charles E.

1981-01-01

The need to educate people about the sky as both a psychological and physical environment is discussed, including a formal curriculum schema (sky as habitat, sky as transport, influence on culture) and informal curriculum, with such topics as recreation, pollution, mythology, and clouds. (DC)

The FERMI All-Sky Variability Analysis: A List of Flaring Gamma-Ray Sources and the Search for Transients in Our Galaxy

DOE PAGES

Ackermann, M.; Ajello, M.; Albert, A.; ...

2013-06-17

In this paper, we present the Fermi All-sky Variability Analysis (FAVA), a tool to systematically study the variability of the gamma-ray sky measured by the Large Area Telescope on board the Fermi Gamma-ray Space Telescope. In addition, for each direction on the sky, FAVA compares the number of gamma-rays observed in a given time window to the number of gamma-rays expected for the average emission detected from that direction. This method is used in weekly time intervals to derive a list of 215 flaring gamma-ray sources. Finally, we proceed to discuss the 27 sources found at Galactic latitudes smaller thanmore » 10° and show that, despite their low latitudes, most of them are likely of extragalactic origin.« less

MSDS sky reference and preamplifier study

NASA Technical Reports Server (NTRS)

Larsen, L.; Stewart, S.; Lambeck, P.

1974-01-01

The major goals in re-designing the Multispectral Scanner and Data System (MSDS) sky reference are: (1) to remove the sun-elevation angle and aircraft-attitude angle dependence from the solar-sky illumination measurement, and (2) to obtain data on the optical state of the atmosphere. The present sky reference is dependent on solar elevation and provides essentially no information on important atmospheric parameters. Two sky reference designs were tested. One system is built around a hyperbolic mirror and the reflection approach. A second approach to a sky reference utilizes a fish-eye lens to obtain a 180 deg field of view. A detailed re-design of the present sky reference around the fish-eye approach, even with its limitations, is recommended for the MSDS system. A preamplifier study was undertaken to find ways of improving the noise-equivalent reflectance by reducing the noise level for silicon detector channels on the MSDS.

Differential Expression of Secretory Aspartyl Proteinase Genes (SAP1-10) in Oral Candida albicans Isolates with Distinct Karyotypes

PubMed Central

Tavanti, Arianna; Pardini, Giacomo; Campa, Daniele; Davini, Paola; Lupetti, Antonella; Senesi, Sonia

2004-01-01

Two karyotypes of oral Candida albicans isolates, named b and c, constituted >80% of a collection from healthy carriers (22 b and 16 c isolates) and oral candidiasis patients who were either infected (31 b and 16 c isolates) or uninfected (13 b and 38 c isolates) with human immunodeficiency virus (HIV). The prevalence of the b and c karyotypes within HIV-positive and HIV-negative patients, respectively, who were suffering from oral candidiasis (P ≤ 0.0001) suggested that these two types possessed different virulence potentials. Since C. albicans proteinases (Saps) are virulence factors in oral candidiasis, we evaluated whether the b and c karyotypes secreted different levels of Saps and expressed different patterns of Sap-encoding genes (SAP1-10). We found that the mean value of Sap activity was significantly lower (P = 0.003) in the commensal type than in the infectious b karyotype, whereas Sap activity in the commensal c type was as high as that registered for the infectious c strains. Marked differences in SAP mRNA expression were observed in commensal strains under non-Sap-inducing conditions, with all SAP genes being expressed only by strains with the c karyotype; interestingly, none of the commensal b strains expressed SAP2. In addition, while all of the SAP1-10 genes were detectable under Sap-inducing conditions, the timing of their expression during growth differed significantly, with mRNAs of SAP1-10 genes detected at 8 and 24 h postinoculation in c and b commensal strains, respectively. This provides the first evidence that commensal oral C. albicans isolates with distinct karyotypes are characterized by different patterns of SAP1-10 gene expression and different levels of Sap secretion. PMID:15472333

Map of low-frequency electromagnetic noise in the sky

NASA Astrophysics Data System (ADS)

Füllekrug, Martin; Mezentsev, Andrew; Watson, Robert; Gaffet, Stéphane; Astin, Ivan; Smith, Nathan; Evans, Adrian

2015-06-01

The Earth's natural electromagnetic environment is disturbed by anthropogenic electromagnetic noise. Here we report the first results from an electromagnetic noise survey of the sky. The locations of electromagnetic noise sources are mapped on the hemisphere above a distributed array of wideband receivers that operate in a small aperture configuration. It is found that the noise sources can be localized at elevation angles up to ˜60° in the sky, well above the horizon. The sky also exhibits zones with little or no noise that are found toward the local zenith and the southwest of the array. These results are obtained by a rigorous analysis of the residuals from the classic dispersion relation for electromagnetic waves using an array analysis of electric field measurements in the frequency range from ˜20 to 250 kHz. The observed locations of the noise sources enable detailed observations of ionospheric modification, for example, caused by particle precipitation and lightning discharges, while the observed exclusion zones enable the detection of weak natural electromagnetic emissions, for example, from streamers in transient luminous events above thunderclouds.

Phenotype in girls and women with Turner syndrome: Association between dysmorphic features, karyotype and cardio-aortic malformations.

PubMed

Noordman, Iris; Duijnhouwer, Anthonie; Kapusta, Livia; Kempers, Marlies; Roeleveld, Nel; Schokking, Michiel; Smeets, Dominique; Freriks, Kim; Timmers, Henri; van Alfen-van der Velden, Janiëlle

2018-06-01

Turner syndrome (TS) is a genetic disorder characterized by the (partial) absence or a structural aberration of the second sex chromosome and is associated with a variety of phenotypes with specific physical features and cardio-aortic malformations. The objective of this study was to gain a better insight into the differences in dysmorphic features between girls and women with TS and to explore the association between these features, karyotype and cardio-aortic malformations. This prospective study investigated 14 dysmorphic features of TS girls and women using a checklist. Three major phenotypic patterns were recognized (severe phenotype, lymphatic phenotype and skeletal phenotype). Patient data including karyotype and cardio-aortic malformations (bicuspid aortic valve (BAV) and aortic coarctation (COA)) were collected. Associations between the prevalence of dysmorphic features, karyotype and cardio-aortic malformations were analysed using chi 2 -test and odds ratios. A total of 202 patients (84 girls and 118 women) were analysed prospectively. Differences in prevalence of dysmorphic features were found between girls and women. A strong association was found between monosomy 45,X and the phenotypic patterns. Furthermore, an association was found between COA and lymphatic phenotype, but no association was found between karyotype and cardio-aortic malformations. This study uncovered a difference in dysmorphic features between girls and women. Monosomy 45,X is associated with a more severe phenotype, lymphatic phenotype and skeletal phenotype. All patients with TS should be screened for cardio-aortic malformations, because in contrast to previous reports, karyotype and cardio-aortic malformations showed no significant association. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

The SkyMapper Transient Survey

NASA Astrophysics Data System (ADS)

Scalzo, R. A.; Yuan, F.; Childress, M. J.; Möller, A.; Schmidt, B. P.; Tucker, B. E.; Zhang, B. R.; Onken, C. A.; Wolf, C.; Astier, P.; Betoule, M.; Regnault, N.

2017-07-01

The SkyMapper 1.3 m telescope at Siding Spring Observatory has now begun regular operations. Alongside the Southern Sky Survey, a comprehensive digital survey of the entire southern sky, SkyMapper will carry out a search for supernovae and other transients. The search strategy, covering a total footprint area of 2 000 deg2 with a cadence of ⩽5 d, is optimised for discovery and follow-up of low-redshift type Ia supernovae to constrain cosmic expansion and peculiar velocities. We describe the search operations and infrastructure, including a parallelised software pipeline to discover variable objects in difference imaging; simulations of the performance of the survey over its lifetime; public access to discovered transients; and some first results from the Science Verification data.

QF-PCR as a substitute for karyotyping of cytotrophoblast for the analysis of chorionic villi: advantages and limitations from a cytogenetic retrospective audit of 44,727 first-trimester prenatal diagnoses.

PubMed

Grati, Francesca R; Malvestiti, Francesca; Grimi, Beatrice; Gaetani, Elisa; Di Meco, Anna Maria; Trotta, Anna; Liuti, Rosaria; Chinetti, Sara; Dulcetti, Francesca; Ruggeri, Anna Maria; Agrati, Cristina; Frascoli, Giuditta; Milani, Silvia; De Toffol, Simona; Martinoni, Lorenza; Paganini, Silvia; Marcato, Livia; Maggi, Federico; Simoni, Giuseppe

2013-05-01

Karyotyping on chorionic villous samples (CVS) includes the analysis of both cytotrophoblast (STC) and mesenchyme (LTC). This approach requires complex laboratory organization and trained technicians. The introduction of quantitative fluorescent polymerase chain reaction (QF-PCR) instead of conventional karyotyping in low-risk pregnancies opened its application in CVS analysis. Discordant QF-PCR and CVS cytogenetic results were reported, and strategies for CVS analysis were introduced to minimize this risk. The possibility to substitute the STC with QF-PCR was reported. The aim of this study is to evaluate benefits and limitations of the approach QF-PCR + LTC compared with the traditional method STC + LTC and to quantify the associated risks of false results. This study is based on a retrospective cytogenetic audit of CVS results (n = 44 727) generated by the STC + LTC analytic approach. False-negative risks related to true fetal mosaicism type IV, imprinting syndromes and maternal contamination in LTC were calculated. Compared with STC + LTC, QF-PCR + LTC approach is associated with a cumulative false-negative risk of ~1/3100-1/4400. Costs and reporting time of STC in a high-throughput cytogenetic lab are similar to a CE-IVD marked QF-PCR analysis. These results should be clearly highlighted in the pre-test counseling and extensively discussed with the couple prior to testing for informed consent. © 2013 John Wiley & Sons, Ltd.

Measuring night sky brightness: methods and challenges

NASA Astrophysics Data System (ADS)

Hänel, Andreas; Posch, Thomas; Ribas, Salvador J.; Aubé, Martin; Duriscoe, Dan; Jechow, Andreas; Kollath, Zoltán; Lolkema, Dorien E.; Moore, Chadwick; Schmidt, Norbert; Spoelstra, Henk; Wuchterl, Günther; Kyba, Christopher C. M.

2018-01-01

Measuring the brightness of the night sky has become an increasingly important topic in recent years, as artificial lights and their scattering by the Earth's atmosphere continue spreading around the globe. Several instruments and techniques have been developed for this task. We give an overview of these, and discuss their strengths and limitations. The different quantities that can and should be derived when measuring the night sky brightness are discussed, as well as the procedures that have been and still need to be defined in this context. We conclude that in many situations, calibrated consumer digital cameras with fisheye lenses provide the best relation between ease-of-use and wealth of obtainable information on the night sky. While they do not obtain full spectral information, they are able to sample the complete sky in a period of minutes, with colour information in three bands. This is important, as given the current global changes in lamp spectra, changes in sky radiance observed only with single band devices may lead to incorrect conclusions regarding long term changes in sky brightness. The acquisition of all-sky information is desirable, as zenith-only information does not provide an adequate characterization of a site. Nevertheless, zenith-only single-band one-channel devices such as the "Sky Quality Meter" continue to be a viable option for long-term studies of night sky brightness and for studies conducted from a moving platform. Accurate interpretation of such data requires some understanding of the colour composition of the sky light. We recommend supplementing long-term time series derived with such devices with periodic all-sky sampling by a calibrated camera system and calibrated luxmeters or luminance meters.

Dark Skies Rangers - Fighting light pollution and simulating dark skies

NASA Astrophysics Data System (ADS)

Doran, Rosa; Correia, Nelson; Guerra, Rita; Costa, Ana

2015-03-01

Dark Skies Rangers is an awareness program aimed at students of all ages to stimulate them to make an audit of light pollution in their school/district. The young light pollution fighters evaluate the level of light pollution, how much energy is being wasted, and produce a report to be delivered to the local authorities. They are also advised to promote a light pollution awareness campaign to the local community targeting not only the dark skies but also other implications such as effects in our health, to the flora and fauna, etc.

Fireballs in the Sky

NASA Astrophysics Data System (ADS)

Day, B. H.; Bland, P.

2016-12-01

Fireballs in the Sky is an innovative Australian citizen science program that connects the public with the research of the Desert Fireball Network (DFN). This research aims to understand the early workings of the solar system, and Fireballs in the Sky invites people around the world to learn about this science, contributing fireball sightings via a user-friendly app. To date, more than 23,000 people have downloaded the app world-wide and participated in planetary science. The Fireballs in the Sky app allows users to get involved with the Desert Fireball Network research, supplementing DFN observations and providing enhanced coverage by reporting their own meteor sightings to DFN scientists. Fireballs in the Sky reports are used to track the trajectories of meteors - from their orbit in space to where they might have landed on Earth. Led by Phil Bland at Curtin University in Australia, the Desert Fireball Network (DFN) uses automated observatories across Australia to triangulate trajectories of meteorites entering the atmosphere, determine pre-entry orbits, and pinpoint their fall positions. Each observatory is an autonomous intelligent imaging system, taking 1000×36Megapixel all-sky images throughout the night, using neural network algorithms to recognize events. They are capable of operating for 12 months in a harsh environment, and store all imagery collected. We developed a completely automated software pipeline for data reduction, and built a supercomputer database for storage, allowing us to process our entire archive. The DFN currently stands at 50 stations distributed across the Australian continent, covering an area of 2.5 million km^2. Working with DFN's partners at NASA's Solar System Exploration Research Virtual Institute, the team is expanding the network beyond Australia to locations around the world. Fireballs in the Sky allows a growing public base to learn about and participate in this exciting research.

Molecular cytogenetic analysis consistently identifies translocations involving chromosomes 1, 2 and 15 in five embryonal rhabdomyosarcoma cell lines and a PAX-FOXO1A fusion gene negative alveolar rhabdomyosarcoma cell line.

PubMed

Roberts, I; Gordon, A; Wang, R; Pritchard-Jones, K; Shipley, J; Coleman, N

2001-01-01

Rhabdomyosarcoma in children is a "small round blue cell tumour" that displays skeletal muscle differentiation. Two main histological variants are recognised, alveolar (ARMS) and embryonal (ERMS) rhabdomyosarcoma. Whereas consistent chromosome translocations characteristic of ARMS have been reported, no such cytogenetic abnormality has yet been described in ERMS. We have used multiple colour chromosome painting to obtain composite karyotypes for five ERMS cell lines and one PAX-FOXO1A fusion gene negative ARMS. The cell lines were assessed by spectral karyotyping (SKY), tailored multi-fluorophore fluorescence in situ hybridisation (M-FISH) using series of seven colour paint sets generated to examine specific abnormalities, and comparative genomic hybridisation (CGH). This approach enabled us to obtain karyotypes of the cell lines in greater detail than previously possible. Several recurring cytogenetic abnormalities were demonstrated, including translocations involving chromosomes 1 and 15 and chromosomes 2 and 15, in 4/6 and 2/6 cell lines respectively. All six cell lines demonstrated abnormalities of chromosome 15. Translocations between chromosomes 1 and 15 have previously been recorded in two primary cases of ERMS by conventional cytogenetics. Analysis of the translocation breakpoints may suggest mechanisms of ERMS tumourigenesis and may enable the development of novel approaches to the clinical management of this tumour. Copyright 2002 S. Karger AG, Basel

Full-Sky Maps of the VHF Radio Sky with the Owens Valley Radio Observatory Long Wavelength Array

NASA Astrophysics Data System (ADS)

Eastwood, Michael W.; Hallinan, Gregg

2018-05-01

21-cm cosmology is a powerful new probe of the intergalactic medium at redshifts 20 >~ z >~ 6 corresponding to the Cosmic Dawn and Epoch of Reionization. Current observations of the highly-redshifted 21-cm transition are limited by the dynamic range they can achieve against foreground sources of low-frequency (<200 MHz) of radio emission. We used the Owens Valley Radio Observatory Long Wavelength Array (OVRO-LWA) to generate a series of new modern high-fidelity sky maps that capture emission on angular scales ranging from tens of degrees to ~15 arcmin, and frequencies between 36 and 73 MHz. These sky maps were generated from the application of Tikhonov-regularized m-mode analysis imaging, which is a new interferometric imaging technique that is uniquely suited for low-frequency, wide-field, drift-scanning interferometers.

Reference karyotype and cytomolecular map for loblolly pine (Pinus taeda L.)

Treesearch

M. Nurul Islam-faridi; C. Dana Nelson; Thomas L. Kubisiak

2007-01-01

A reference karyotype is presented for loblolly pine (Pinus taeda L., subgenus Pinus , section Pinus, subsection Australes), based on fluorescent in situ hybridization (FISH), using 18s-28s rDNA, 5s rDNA, and Arabidopsis-type telomere repeat sequence (A-type TRS). Well...

Providing Diurnal Sky Cover Data at ARM Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Klebe, Dimitri I.

2015-03-06

The Solmirus Corporation was awarded two-year funding to perform a comprehensive data analysis of observations made during Solmirus’ 2009 field campaign (conducted from May 21 to July 27, 2009 at the ARM SGP site) using their All Sky Infrared Visible Analyzer (ASIVA) instrument. The objective was to develop a suite of cloud property data products for the ASIVA instrument that could be implemented in real time and tailored for cloud modelers. This final report describes Solmirus’ research and findings enabled by this grant. The primary objective of this award was to develop a diurnal sky cover (SC) data product utilizingmore » the ASIVA’s infrared (IR) radiometrically-calibrated data and is described in detail. Other data products discussed in this report include the sky cover derived from ASIVA’s visible channel and precipitable water vapor, cloud temperature (both brightness and color), and cloud height inferred from ASIVA’s IR channels.« less

Eyeing the Sky's Water Vapor

NASA Technical Reports Server (NTRS)

2008-01-01

This image, and many like it, are one way NASA's Phoenix Mars Lander is measuring trace amounts of water vapor in the atmosphere over far-northern Mars. Phoenix's Surface Stereo Imager (SSI) uses solar filters, or filters designed to image the sun, to make these images. The camera is aimed at the sky for long exposures.

SSI took this image as a test on June 9, 2008, which was the Phoenix mission's 15th Martian day, or sol, since landing, at 5:20 p.m. local solar time. The camera was pointed about 38 degrees above the horizon. The white dots in the sky are detector dark current that will be removed during image processing and analysis.

The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space

Karyotype Evolution in Birds: From Conventional Staining to Chromosome Painting

PubMed Central

Ferguson-Smith, Malcolm A.

2018-01-01

In the last few decades, there have been great efforts to reconstruct the phylogeny of Neoaves based mainly on DNA sequencing. Despite the importance of karyotype data in phylogenetic studies, especially with the advent of fluorescence in situ hybridization (FISH) techniques using different types of probes, the use of chromosomal data to clarify phylogenetic proposals is still minimal. Additionally, comparative chromosome painting in birds is restricted to a few orders, while in mammals, for example, virtually all orders have already been analyzed using this method. Most reports are based on comparisons using Gallus gallus probes, and only a small number of species have been analyzed with more informative sets of probes, such as those from Leucopternis albicollis and Gyps fulvus, which show ancestral macrochromosomes rearranged in alternative patterns. Despite this, it is appropriate to review the available cytogenetic information and possible phylogenetic conclusions. In this report, the authors gather both classical and molecular cytogenetic data and describe some interesting and unique characteristics of karyotype evolution in birds. PMID:29584697

Identification of Proteins Related to Epigenetic Regulation in the Malignant Transformation of Aberrant Karyotypic Human Embryonic Stem Cells by Quantitative Proteomics

PubMed Central

Sun, Yi; Yang, Yixuan; Zeng, Sicong; Tan, Yueqiu; Lu, Guangxiu; Lin, Ge

2014-01-01

Previous reports have demonstrated that human embryonic stem cells (hESCs) tend to develop genomic alterations and progress to a malignant state during long-term in vitro culture. This raises concerns of the clinical safety in using cultured hESCs. However, transformed hESCs might serve as an excellent model to determine the process of embryonic stem cell transition. In this study, ITRAQ-based tandem mass spectrometry was used to quantify normal and aberrant karyotypic hESCs proteins from simple to more complex karyotypic abnormalities. We identified and quantified 2583 proteins, and found that the expression levels of 316 proteins that represented at least 23 functional molecular groups were significantly different in both normal and abnormal hESCs. Dysregulated protein expression in epigenetic regulation was further verified in six pairs of hESC lines in early and late passage. In summary, this study is the first large-scale quantitative proteomic analysis of the malignant transformation of aberrant karyotypic hESCs. The data generated should serve as a useful reference of stem cell-derived tumor progression. Increased expression of both HDAC2 and CTNNB1 are detected as early as the pre-neoplastic stage, and might serve as prognostic markers in the malignant transformation of hESCs. PMID:24465727

A variant Klinefelter syndrome patient with an XXY/XX/XY karyotype studied by GTG-banding and fluorescence in situ hybridization.

PubMed

Mark, H F; Bai, H; Sotomayor, E; Mark, S; Zolnierz, K; Airall, E; Sigman, M

1999-09-01

Klinefelter syndrome is the first human sex chromosomal abnormality to be reported. The majority of Klinefelter syndrome patients have the XXY karyotype. Approximately 15% of Klinefelter patients, however, are mosaics with variable phenotypes. Among the variant Klinefelter genotypes are such karyotypes as XY/XXY and XX/XXY. The variation in phenotypes most likely depends on the number of abnormal cells and their location in body tissues. In this paper we report the case of a 42-year-old patient with Klinefelter syndrome and a rare variant mosaic XXY/XX karyotype initially identified by GTG-banding. This was confirmed by fluorescence in situ hybridization (FISH) using a dual-color X/Y probe. The patient presented with erectile dysfunction and few other physical findings. Thus, this case illustrates a rare variant of Klinefelter syndrome with a relatively mild phenotype. It also illustrates the utility of FISH as an adjunct to conventional cytogenetics in assessing the chromosome copy number in each cell line of a mosaic. In our case, FISH also detected the presence of a small population of cells with the XY karyotype not previously detected in the initial 30-cell GTG-banding analysis. Thus, through a combination of GTG-banding and FISH, the patient was determined to be an XXY/XX/XY mosaic. Given that most individuals with Klinefelter syndrome are infertile, and that these individuals may wish to reproduce with the aid of modern reproductive technology, such as testicular fine needle aspiration and intracytoplasmic sperm injection, it is important that accurate estimation of the frequency of abnormal cells be obtained for accurate risk estimation and genetic counseling, as recent studies in patients with mosaic Klinefelter syndrome revealed that germ cells with sex chromosomal abnormalities were nevertheless capable of completing meiosis. Copyright 1999 Academic Press.

Rapid All-Sky Transient Discovery and Analysis with Evryscope

NASA Astrophysics Data System (ADS)

Corbett, Henry T.; Law, Nicholas; Fors, Octavi; Ratzloff, Jeff; Goeke, Erin; Howard, Ward S.

2018-01-01

The Evryscope is an array of 24 small telescopes on a common mount, capable of observing the entire visible sky down to g' ~ 16 with a two-minute cadence. Each exposure covers 8000 square degrees over 691 MPix and requires minimal readout time, providing 97% continuous coverage of the night sky. The system's large field of view and rapid cadence enable exploration of a previously inaccessible parameter space of bright and fast transients, including nearby microlensing events, supernovae, and kilonovae GW counterparts. The first instrument, located at CTIO in Chile, was deployed in mid-2015 and is currently in production creating multi-year light curves with percent-level precision. A second identical system is on track for deployment at Mount Laguna Observatory in California in early 2018. Once operational, the two sites will provide simultaneous two-color photometry over a 4000 square degree overlapping region accessible to both instruments, operating as a combined discovery and follow-up network for transient phenomena on all nearby stars and many nearby galaxies. I will present recent science results from the Evryscope and an overview of our data reduction pipeline.

Network based sky Brightness Monitor

NASA Astrophysics Data System (ADS)

McKenna, Dan; Pulvermacher, R.; Davis, D. R.

2009-01-01

We have developed and are currently testing an autonomous 2 channel photometer designed to measure the night sky brightness in the visual wavelengths over a multi-year campaign. The photometer uses a robust silicon sensor filtered with Hoya CM500 glass. The Sky brightness is measured every minute at two elevation angles typically zenith and 20 degrees to monitor brightness and transparency. The Sky Brightness monitor consists of two units, the remote photometer and a network interface. Currently these devices use 2.4 Ghz transceivers with a free space range of 100 meters. The remote unit is battery powered with day time recharging using a solar panel. Data received by the network interface transmits data via standard POP Email protocol. A second version is under development for radio sensitive areas using an optical fiber for data transmission. We will present the current comparison with the National Park Service sky monitoring camera. We will also discuss the calibration methods used for standardization and temperature compensation. This system is expected to be deployed in the next year and be operated by the International Dark Sky Association SKYMONITOR project.

The BlueSky Smoke Modeling Framework: Recent Developments

NASA Astrophysics Data System (ADS)

Sullivan, D. C.; Larkin, N.; Raffuse, S. M.; Strand, T.; ONeill, S. M.; Leung, F. T.; Qu, J. J.; Hao, X.

2012-12-01

(TRMM) Multi-satellite Precipitation Analysis Real-Time (TMPA-RT) data set is being used to improve dead fuel moisture estimates. - EastFire live fuel moisture estimates, which are derived from NASA's MODIS direct broadcast, are being used to improve live fuel moisture estimates. - NASA's Multi-angle Imaging Spectroradiometer (MISR) stereo heights are being used to improve estimates of plume injection heights. Further, the Fire Location and Modeling of Burning Emissions (FLAMBÉ) model was incorporated into the BlueSky Framework as an alternative means of calculating fire emissions. FLAMBÉ directly estimates emissions on the basis of fire detections and radiance measures from NASA's MODIS and NOAA's GOES satellites. (The authors gratefully acknowledge NASA's Applied Sciences Program [Grant Nos. NN506AB52A and NNX09AV76G)], the USDA Forest Service, and the Joint Fire Science Program for their support.)

Whole exome sequencing identifies driver mutations in asymptomatic computed tomography-detected lung cancers with normal karyotype.

PubMed

Belloni, Elena; Veronesi, Giulia; Rotta, Luca; Volorio, Sara; Sardella, Domenico; Bernard, Loris; Pece, Salvatore; Di Fiore, Pier Paolo; Fumagalli, Caterina; Barberis, Massimo; Spaggiari, Lorenzo; Pelicci, Pier Giuseppe; Riva, Laura

2015-04-01

The efficacy of curative surgery for lung cancer could be largely improved by non-invasive screening programs, which can detect the disease at early stages. We previously showed that 18% of screening-identified lung cancers demonstrate a normal karyotype and, following high-density genome scanning, can be subdivided into samples with 1) numerous; 2) none; and 3) few copy number alterations. Whole exome sequencing was applied to the two normal karyotype, screening-detected lung cancers, constituting group 2, as well as normal controls. We identified mutations in both tumors, including KEAP1 (commonly mutated in lung cancers) in one, and TP53, PMS1, and MSH3 (well-characterized DNA-repair genes) in the other. The two normal karyotype screening-detected lung tumors displayed a typical lung cancer mutational profile that only next generation sequencing could reveal, which offered an additional contribution to the over-diagnosis bias concept hypothesized within lung cancer screening programs. Copyright © 2015 Elsevier Inc. All rights reserved.

Promoting Dark Sky Protection in Chile: the Gabriel Mistral IDA Dark Sky Sanctuary and Other AURA Initiatives

NASA Astrophysics Data System (ADS)

Smith, R. Chris; Smith, Malcolm; Pompea, Stephen; Sanhueza, Pedro; AURA-Chile EPO Team

2018-01-01

For over 20 years, AURA has been leading efforts promoting the protection of dark skies in northern Chile. Efforts began in the early 1990s at AURA's Cerro Tololo Inter-American Observatory (CTIO), working in collaboration with other international observatories in Chile including Las Campanas Observatory (LCO) and the European Southern Observatory (ESO). CTIO also partnered with local communities, for example supporting Vicuña's effort to establish the first municipal observatory in Chile. Today we have developed a multifaceted effort of dark sky protection, including proactive government relations at national and local levels, a strong educational and public outreach program, and a program of highlighting international recognition of the dark skies through the IDA Dark Sky Places program. Work on international recognition has included the declaration of the Gabriel Mistral IDA Dark Sky Sanctuary, the first such IDA sanctuary in the world.

Karyotypic characterization of Trachemys dorbigni (Testudines: Emydidae) and Chelonoidis (Geochelone) donosobarrosi (Testudines: Testudinidae), two species of Cryptodiran turtles from Argentina.

PubMed

Martinez, Pablo A; Boeris, Juan M; Sánchez, Julieta; Pastori, María C; Bolzán, Alejandro D; Ledesma, Mario A

2009-12-01

We describe for the first time the karyotypes of two species of Cryptodiran turtles from Argentina, namely, Trachemys dorbigni (Emydidae) and Chelonoidis (Geochelone) donosobarrosi (Testudinidae). The karyotype of T. dorbigni (2n = 50) consists of 13 pairs of macrochromosomes and 12 pairs of microchromosomes, whereas the karyotype of C. donosobarrosi (2n = 52) consists of 11 pairs of macrochromosomes and 15 pairs of microchromosomes. Fluorescence in situ hybridization (FISH) with a (TTAGGG)n telomeric probe showed that the chromosomes of these species have four telomeric signals, two at each end, indicating that none of the chromosomes of T. dorbigni and C. donosobarrosi are telocentric. The fact that no interstitial telomeric signals were observed after FISH, suggests that interstitial telomeric sequences did not have a major role in the chromosomal evolution of these species. Additional data will be needed to elucidate if interstitial telomeric sequences have a major role in the karyotypic evolution of Testudines.

Applying machine learning classification techniques to automate sky object cataloguing

NASA Astrophysics Data System (ADS)

Fayyad, Usama M.; Doyle, Richard J.; Weir, W. Nick; Djorgovski, Stanislav

1993-08-01

We describe the application of an Artificial Intelligence machine learning techniques to the development of an automated tool for the reduction of a large scientific data set. The 2nd Mt. Palomar Northern Sky Survey is nearly completed. This survey provides comprehensive coverage of the northern celestial hemisphere in the form of photographic plates. The plates are being transformed into digitized images whose quality will probably not be surpassed in the next ten to twenty years. The images are expected to contain on the order of 107 galaxies and 108 stars. Astronomers wish to determine which of these sky objects belong to various classes of galaxies and stars. Unfortunately, the size of this data set precludes analysis in an exclusively manual fashion. Our approach is to develop a software system which integrates the functions of independently developed techniques for image processing and data classification. Digitized sky images are passed through image processing routines to identify sky objects and to extract a set of features for each object. These routines are used to help select a useful set of attributes for classifying sky objects. Then GID3 (Generalized ID3) and O-B Tree, two inductive learning techniques, learns classification decision trees from examples. These classifiers will then be applied to new data. These developmnent process is highly interactive, with astronomer input playing a vital role. Astronomers refine the feature set used to construct sky object descriptions, and evaluate the performance of the automated classification technique on new data. This paper gives an overview of the machine learning techniques with an emphasis on their general applicability, describes the details of our specific application, and reports the initial encouraging results. The results indicate that our machine learning approach is well-suited to the problem. The primary benefit of the approach is increased data reduction throughput. Another benefit is

A Machine-Learning-Driven Sky Model.

PubMed

Satylmys, Pynar; Bashford-Rogers, Thomas; Chalmers, Alan; Debattista, Kurt

2017-01-01

Sky illumination is responsible for much of the lighting in a virtual environment. A machine-learning-based approach can compactly represent sky illumination from both existing analytic sky models and from captured environment maps. The proposed approach can approximate the captured lighting at a significantly reduced memory cost and enable smooth transitions of sky lighting to be created from a small set of environment maps captured at discrete times of day. The author's results demonstrate accuracy close to the ground truth for both analytical and capture-based methods. The approach has a low runtime overhead, so it can be used as a generic approach for both offline and real-time applications.

Prenatal diagnosis of de novo t(2;18;14)(q33.1;q12.2;q31.2), dup(5)(q34q34), del(7)(p21.1p21.1), and del(10)(q25.3q25.3) and a review of the prenatally ascertained de novo apparently balanced complex and multiple chromosomal rearrangements.

PubMed

Chen, Chih-Ping; Chern, Schu-Rern; Lee, Chen-Chi; Lin, Chyi-Chyang; Li, Yueh-Chun; Hsieh, Lie-Jiau; Chen, Wen-Lin; Wang, Wayseen

2006-02-01

To present the prenatal diagnosis of a de novo complex chromosomal rearrangement (CCR) associated with de novo interstitial deletions and duplication and to review the literature. Amniocentesis was performed at 18 weeks' gestation because of an increased risk for Down syndrome based on maternal serum alpha-fetoprotein and human chorionic gonadotrophin screening. Amniocentesis revealed a karyotype of 46,XY,t(2;18;14)(q33.1;q12.2;q31.2),dup(5)(q34q34),del(7)(p21.1p21.1), del(10)(q25.3q25.3). The parental karyotypes were normal. The pregnancy was terminated. The fetus manifested facial dysmorphism, clinodactyly of both hands, and hypoplasia of the left great toe. Spectral karyotyping (SKY), cytogenetic polymorphism, and polymorphic DNA markers were used to investigate the imbalances and the origin of the de novo aberrant chromosomes. SKY showed a three-way CCR. Cytogenetic polymorphism investigation of the derivative chromosome 14 of the fetus and the parental chromosomes 14 determined the maternal origin of the translocation. Polymorphic DNA marker analysis confirmed the maternal origin of the de novo interstitial deletions and duplication. No cryptic imbalance at or near the breakpoints of the CCR was detected by the molecular analysis. De novo apparently balanced CCRs may be associated with imbalances in other chromosomes. We suggest further investigation and re-evaluation of cryptic or subtle imbalances in all cases classified as de novo apparently balanced CCRs. Copyright 2006 John Wiley & Sons, Ltd.

Karyotype variation is indicative of subgenomic and ecotypic differentiation in switchgrass

USDA-ARS?s Scientific Manuscript database

A cytogenetic study was conducted on a dihaploid individual (2n'='2X'='18) of switchgrass to establish a chromosome karyotype. Size differences, condensation patterns, and arm-length ratios were used as identifying features and fluorescence in-situ hybridization (FISH) assigned 5S and 45S rDNA loci...

Frequency of College Students' Night-Sky Watching Behaviors

ERIC Educational Resources Information Center

Kelly, William E.; Kelly, Kathryn E.; Batey, Jason

2006-01-01

College students (N = 112) completed the Noctcaelador Inventory, a measure of psychological attachment to the night-sky, and estimated various night-sky watching related activities: frequency and duration of night-sky watching, astro-tourism, ownership of night-sky viewing equipment, and attendance of observatories or planetariums. The results…

SkyNet: Modular nuclear reaction network library

NASA Astrophysics Data System (ADS)

Lippuner, Jonas; Roberts, Luke F.

2017-10-01

The general-purpose nuclear reaction network SkyNet evolves the abundances of nuclear species under the influence of nuclear reactions. SkyNet can be used to compute the nucleosynthesis evolution in all astrophysical scenarios where nucleosynthesis occurs. Any list of isotopes can be evolved and SkyNet supports various different types of nuclear reactions. SkyNet is modular, permitting new or existing physics, such as nuclear reactions or equations of state, to be easily added or modified.

A case of premature ovarian failure (POF) in a 31-year-old woman with a 47,XXX karyotype.

PubMed

Skałba, Piotr; Cygal, Anna; Gierzyńska, Zuzanna

2010-01-01

A case of POF in a 31-year-old woman with karyotype 47,XXX. The aim of the study was to discuss a case of POF in a 31-year-old patient with polysomy 47,XXX. The described karyotype is not usually associated with this characteristic physical phenotype. In some rare cases, menstrual disorders, sterility, secondary amenorrhoea, premature menopause, and low intelligence are found. Our observations revealed the necessity for cytogenetic examination in all women at reproductive age with symptoms of premature ovarian failure. According to the data found in literature, patients with POF and karyotype disorders belong to the risk group of premature death, mostly for cardiological reasons. Raising patient awareness about the risk may have a positive effect on quality of life and regularity of check-ups.

Whole Sky Imager Characterization of Sky Obscuration by Clouds for the Starfire Optical Range

DTIC Science & Technology

2010-01-11

9.3 Further Algorithm Development and Evaluation 58 9.4 Analysis of the Data Base 58 10.0 DISCUSSION OF CONTRACT REQUIREMENTS 59 10.1...clouds, Site 5 Feb 14 2008 0900 28 21 Transmittance map, Moonlight , clear sky, Site 5 Feb 3 2008 0700 28 22 Transmittance map, Moonlight , thin...clouds, Site 5 Feb 8 2008 1200 29 23 Transmittance map, Moonlight , broken clouds, Site 5 Feb 2 2008 0800 29 24 Cloud Algorithm Results, Moonlight

NASA SETI microwave observing project: Sky Survey element

NASA Technical Reports Server (NTRS)

Klein, M. J.

1991-01-01

The SETI Sky Survey Observing Program is one of two complimentary strategies that NASA plans to use in its microwave Search for Extraterrestrial Intelligence (SETI). The primary objective of the sky survey is to search the entire sky over the frequency range of 1.0 to 10.0 GHz for evidence of narrow band signals of extraterrestrial intelligent origin. Frequency resolutions of 30 Hz or narrower will be used across the entire band. Spectrum analyzers with upwards of ten million channels are required to keep the survey time approximately 6 years. Data rates in excess of 10 megabits per second will be generated in the data taking process. Sophisticated data processing techniques will be required to determine the ever changing receiver baselines, and to detect and archive potential SETI signals. Existing radio telescopes, including several of NASA's Deep Space Network (DSN) 34 meter antennas located at Goldstone, CA and Tidbinbilla, Australia will be used for the observations. The JPL has the primary responsibility to develop and carry out the sky survey. In order to lay the foundation for the full scale SETI Sky Survey, a prototype system is being developed at the JPL. The system will be installed at the new 34-m high efficiency antenna at the Deep Space Station (DSS) 13 research and development station, Goldstone, CA, where it will be used to initiate the observational phase of the NASA SETI Sky Survey. It is anticipated that the early observations will be useful to test signal detection algorithms, scan strategies, and radio frequency interference rejection schemes. The SETI specific elements of the prototype system are: (1) the Wide Band Spectrum Analyzer (WBSA); a 2-million channel fast Fourier transformation (FFT) spectrum analyzer which covers an instantaneous bandpass of 40 MHz; (2) the signal detection processor; and (3) the SETI Sky Survey Manager, a network-based C-language environment that provides observatory control, performs data acquisition and analysis

ROTSE All-Sky Surveys for Variable Stars. I. Test Fields

NASA Astrophysics Data System (ADS)

Akerlof, C.; Amrose, S.; Balsano, R.; Bloch, J.; Casperson, D.; Fletcher, S.; Gisler, G.; Hills, J.; Kehoe, R.; Lee, B.; Marshall, S.; McKay, T.; Pawl, A.; Schaefer, J.; Szymanski, J.; Wren, J.

2000-04-01

The Robotic Optical Transient Search Experiment I (ROTSE-I) experiment has generated CCD photometry for the entire northern sky in two epochs nightly since 1998 March. These sky patrol data are a powerful resource for studies of astrophysical transients. As a demonstration project, we present first results of a search for periodic variable stars derived from ROTSE-I observations. Variable identification, period determination, and type classification are conducted via automatic algorithms. In a set of nine ROTSE-I sky patrol fields covering roughly 2000 deg2, we identify 1781 periodic variable stars with mean magnitudes between mv=10.0 and mv=15.5. About 90% of these objects are newly identified as variable. Examples of many familiar types are presented. All classifications for this study have been manually confirmed. The selection criteria for this analysis have been conservatively defined and are known to be biased against some variable classes. This preliminary study includes only 5.6% of the total ROTSE-I sky coverage, suggesting that the full ROTSE-I variable catalog will include more than 32,000 periodic variable stars.

Second-trimester IL-15 and IL-18 levels in the amniotic fluid of fetuses with normal karyotypes and with chromosome abnormalities.

PubMed

Klimkiewicz-Blok, Dominika; Florjański, Jerzy; Zalewski, Jerzy; Blok, Radosław

2012-01-01

Little is known about the behavior of interleukin 15 (IL-15) and 18 (IL-18) in the amniotic fluid in the second trimester of gestations complicated by chromosomal defects in the fetus. Likewise, it has not yet been established whether a fetus with chromosome abnormalities creates its immunity mechanisms in the same way as a fetus with a normal karyotype. The aim of this work was to assess the concentration of IL-15 and IL-18 in the amniotic fluid in the second trimester of gestation in fetuses with normal karyotypes and with chromosome abnormalities. The material consisted of 51 samples of amniotic fluid obtained from genetic amniocenteses carried out between the 15th and the 19th weeks of gestation. On the basis of cytogenetic screening, two groups were singled out: Group I--45 fetuses with normal karyotypes, and Group II--6 fetuses with abnormal karyotypes. The concentrations of IL-15 and IL-18 in the amniotic fluid were assessed with ready-made assays and analyzed, and the results from both groups were compared. The differences between the IL-15 levels in the amniotic fluid from Groups I and II proved to be statistically insignificant (p = 0.054). However, the average IL-18 levels in the amniotic fluid of the fetuses with normal karyotypes were significantly higher than in the amniotic fluid of the fetuses with chromosome abnormalities (p = 0.032). Some defense mechanisms in the second trimester of gestation in fetuses with chromosome abnormalities may develop in a different way than in fetuses with normal karyotypes.

CFHT's SkyProbe: True Atmospheric Attenuation Measurement in the Telescope Field

NASA Astrophysics Data System (ADS)

Cuillandre, J.-C.; Magnier, E. A.; Isani, S.; Sabin, D.; Knight, W.; Kras, S.; Lai, K.

Developed at the Canada France Hawaii Telescope (CFHT), SkyProbe is a system that allows the direct measurement of the true attenuation by clouds. This measurement is performed approximately once per min, directly on the field viewed by the telescope. It has been possible to make this system relatively inexpensively due to low cost CCD cameras available on the amateur market. A crucial addition to this hardware is the recent availability of a full-sky photometry catalog at the appropriate depth: the Tycho catalog from the Hipparcos mission. A very important element in the SkyProbe data set creation is the automatic data analysis pipeline, Elixir, developed at CFHT for the improved operation of the CFHT wide-field imagers CFH12K and MegaCam. SkyProbe's FITS images are processed in real time, and the pipeline output (a zero point attenuation) provides the current sky transmission to the observers and aids immediate decision making. These measurements are also attached to the archived data, adding a key tool for future use by other astronomers. Specific features of the detector, such as intra pixel quantum efficiency variations, must be taken into consideration since the data are strongly undersampled.

SkyDOT: a publicly accessible variability database, containing multiple sky surveys and real-time data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Starr, D. L.; Wozniak, P. R.; Vestrand, W. T.

2002-01-01

SkyDOT (Sky Database for Objects in Time-Domain) is a Virtual Observatory currently comprised of data from the RAPTOR, ROTSE I, and OGLE I1 survey projects. This makes it a very large time domain database. In addition, the RAPTOR project provides SkyDOT with real-time variability data as well as stereoscopic information. With its web interface, we believe SkyDOT will be a very useful tool for both astronomers, and the public. Our main task has been to construct an efficient relational database containing all existing data, while handling a real-time inflow of data. We also provide a useful web interface allowing easymore » access to both astronomers and the public. Initially, this server will allow common searches, specific queries, and access to light curves. In the future we will include machine learning classification tools and access to spectral information.« less

VizieR Online Data Catalog: Northern Sky Variability Survey (Wozniak+, 2004)

NASA Astrophysics Data System (ADS)

Wozniak, P. R.; Vestrand, W. T.; Akerlof, C. W.; Balsano, R.; Bloch, J.; Casperson, D.; Fletcher, S.; Gisler, G.; Kehoe, R.; Kinemuchi, K.; Lee, B. C.; Marshall, S.; McGowan, K. E.; McKay, T. A.; Rykoff, E. S.; Smith, D. A.; Szymanski, J.; Wren, J.

2004-11-01

The Northern Sky Variability Survey (NSVS) is a temporal record of the sky over the optical magnitude range from 8 to 15.5. It was conducted in the course of the first-generation Robotic Optical Transient Search Experiment (ROTSE-I) using a robotic system of four comounted unfiltered telephoto lenses equipped with CCD cameras. The survey was conducted from Los Alamos, New Mexico, and primarily covers the entire northern sky. Some data in southern fields between declinations 0{deg} and -38{deg} are also available, although with fewer epochs and noticeably lesser quality. The NSVS contains light curves for approximately 14 million objects. With a 1-yr baseline and typically 100-500 measurements per object, the NSVS is the most extensive record of stellar variability across the bright sky available today. In a median field, bright unsaturated stars attain a point-to-point photometric scatter of ~0.02mag and position errors within 2. At Galactic latitudes |b|<20{deg}, the data quality is limited by severe blending due to the ~14" pixel size. We present basic characteristics of the data set and describe data collection, analysis, and distribution. All NSVS photometric measurements are available for on-line public access from the Sky Database for Objects in Time-Domain (SkyDOT) at Los Alamos National Laboratory. Copies of the full survey photometry may also be requested on tape. (7 data files).

VLITE Surveys the Sky: A 340 MHz Companion to the VLA Sky Survey (VLASS)

NASA Astrophysics Data System (ADS)

Peters, Wendy; Clarke, Tracy; Brisken, Walter; Cotton, William; Richards, Emily E.; Giacintucci, Simona; Kassim, Namir

2018-01-01

The VLA Low Band Ionosphere and Transient Experiment (VLITE; ) is a commensal observing system on the Karl G. Janksy Very Large Array (VLA) which was developed by the Naval Research Laboratory and NRAO. A 64 MHz sub-band from the prime focus 240-470 MHz dipoles is correlated during nearly all regular VLA observations. VLITE uses dedicated samplers and fibers, as well as a custom designed, real-time DiFX software correlator, and requires no additional resources from the VLA system running the primary science program. The experiment has been operating since November 2014 with 10 antennas; a recent expansion in summer 2017 increased that number to 16 and more than doubled the number of baselines.The VLA Sky Survey (VLASS; ), is an ongoing survey of the entire sky visible to the VLA at a frequency of 2-4 GHz. The observations are made using an "on-the-fly" (OTF) continuous RA scanning technique which fills in the sky by observing along rows of constant declination. VLITE breaks the data into 2-second integrations and correlates these at a central position every 1.5 degrees. All data for each correlator position is imaged separately, corrected and weighted by an appropriately elongated primary beam model, and then combined in the image plane to create a mosaic of the sky. A catalog of the sources is extracted to provide a 340 MHz sky model.We present preliminary images and catalogs from the 2017 VLASS observations which began in early September, 2017, and continued on a nearly daily basis throughout the fall. In addition to providing a unique sky model at 340 MHz, these data complement VLASS by providing spectral indices for all cataloged sources.

First karyotype description and nuclear 2C value for Myrsine (Primulaceae): comparing three species.

PubMed

de Carvalho, Renata Flávia; Amaral-Silva, Paulo Marcos; Spadeto, Micheli Sossai; Nunes, Andrei Caíque Pires; Carrijo, Tatiana Tavares; Carvalho, Carlos Roberto; Clarindo, Wellington Ronildo

2017-01-01

Cytogenetic studies in Primulaceae are mostly available for herbaceous species, and are focused on the chromosome number determination. An accurate karyotype characterization represents a starting point to know the morphometry and class of the chromosomes. Comparison among species within Myrsine , associating these data with the nuclear 2C value, can show changes that led the karyotype evolution. Here, we studied three Myrsine species [ Myrsine coriacea (Swartz, 1788) Brown ex Roemer et Schultes, 1819, Myrsine umbellata Martius, 1841 and Myrsine parvifolia Candolle, 1841] that show different abilities to occupy the varied types of vegetation within the Brazilian Atlantic Forest. Cytogenetic characterization showed some individuals with 2n = 45 chromosomes for Myrsine parvifolia and Myrsine coriacea , with most individuals of the three species having 2n = 46. The first karyograms for Myrsine were assembled and presented morphologically identical and distinct chromosome pairs. In addition, differences in the mean 2C nuclear value and chromosome morphometry were found. Therefore, the first description of the Myrsine karyotype has been presented, as well as the nuclear 2C value. The procedures can be applied to other Myrsine species for future investigations in order to better understand its effects on the differential spatial occupation abilities shown by the species in Brazilian Atlantic Forest.

Daytime Water Detection Based on Sky Reflections

NASA Technical Reports Server (NTRS)

Rankin, Arturo; Matthies, Larry; Bellutta, Paolo

2011-01-01

A water body s surface can be modeled as a horizontal mirror. Water detection based on sky reflections and color variation are complementary. A reflection coefficient model suggests sky reflections dominate the color of water at ranges > 12 meters. Water detection based on sky reflections: (1) geometrically locates the pixel in the sky that is reflecting on a candidate water pixel on the ground (2) predicts if the ground pixel is water based on color similarity and local terrain features. Water detection has been integrated on XUVs.

Amsterdam-ASTRON radio transient facility and analysis centre: towards a 24 x 7, all-sky monitor for the low-frequency array (LOFAR).

PubMed

Prasad, Peeyush; Wijnholds, Stefan J

2013-06-13

The Amsterdam-ASTRON Radio Transient Facility And Analysis Centre (AARTFAAC) project aims to implement an all-sky monitor (ASM), using the low-frequency array (LOFAR) telescope. It will enable real-time, 24 × 7 monitoring for low-frequency radio transients over most of the sky locally visible to the LOFAR at time scales ranging from seconds to several days, and rapid triggering of follow-up observations with the full LOFAR on detection of potential transient candidates. These requirements pose several implementation challenges: imaging of an all-sky field of view, low latencies of processing, continuous availability and autonomous operation of the ASM. The first of these has already resulted in the correlator for the ASM being the largest in the world in terms of the number of input data streams. We have carried out test observations using existing LOFAR infrastructure, in order to quantify and constrain crucial instrumental design criteria for the ASM. In this study, we present an overview of the AARTFAAC data-processing pipeline and illustrate some of the aforementioned challenges by showing all-sky images obtained from one of the test observations. These results provide quantitative estimates of the capabilities of the instrument.

The sky as a topic in science education

NASA Astrophysics Data System (ADS)

Galili, Igal; Weizman, Ayelet; Cohen, Ariel

2004-07-01

The concepts of sky and visibility distance, as perceived by different learners, are investigated for the first time as a subject of a science education research. Mental models of students with regard to the subject were elicited. They were interpreted in terms of two-level hierarchy: schemes and facets-of-knowledge (defined in the paper). Our results suggest that many students do not consider sky to be a scientific (physical) concept. The majority perceives the sky as having an oblate profile. Among the parameters that determine this profile were mentioned daytime, atmosphere, geometry of the situation, and weather conditions. The students hold two major explanatory views (schemes) with regard to the sky: the sky is the atmosphere and the sky is the appearance of space. With regard to the visibility distance, the two following schemes prevail: vision weakens with the distance and natural obstacles determine vision distance. No significant correlation was found between the views regarding the sky appearance and the vision distance. Students do not relate Moon illusion to the profile of sky or visibility distance. The notions of sky and visibility distance are argued for inclusion into science curriculum, and implications of the findings to a constructivist instruction of the considered concepts and phenomena are discussed.

The Automatic Recognition of the Abnormal Sky-subtraction Spectra Based on Hadoop

NASA Astrophysics Data System (ADS)

An, An; Pan, Jingchang

2017-10-01

The skylines, superimposing on the target spectrum as a main noise, If the spectrum still contains a large number of high strength skylight residuals after sky-subtraction processing, it will not be conducive to the follow-up analysis of the target spectrum. At the same time, the LAMOST can observe a quantity of spectroscopic data in every night. We need an efficient platform to proceed the recognition of the larger numbers of abnormal sky-subtraction spectra quickly. Hadoop, as a distributed parallel data computing platform, can deal with large amounts of data effectively. In this paper, we conduct the continuum normalization firstly and then a simple and effective method will be presented to automatic recognize the abnormal sky-subtraction spectra based on Hadoop platform. Obtain through the experiment, the Hadoop platform can implement the recognition with more speed and efficiency, and the simple method can recognize the abnormal sky-subtraction spectra and find the abnormal skyline positions of different residual strength effectively, can be applied to the automatic detection of abnormal sky-subtraction of large number of spectra.

Karyotype relationships among selected deer species and cattle revealed by bovine FISH probes.

PubMed

Frohlich, Jan; Kubickova, Svatava; Musilova, Petra; Cernohorska, Halina; Muskova, Helena; Vodicka, Roman; Rubes, Jiri

2017-01-01

The Cervidae family comprises more than fifty species divided into three subfamilies: Capreolinae, Cervinae and Hydropotinae. A characteristic attribute for the species included in this family is the great karyotype diversity, with the chromosomal numbers ranging from 2n = 6 observed in female Muntiacus muntjak vaginalis to 2n = 70 found in Mazama gouazoubira as a result of numerous Robertsonian and tandem fusions. This work reports chromosomal homologies between cattle (Bos taurus, 2n = 60) and nine cervid species using a combination of whole chromosome and region-specific paints and BAC clones derived from cattle. We show that despite the great diversity of karyotypes in the studied species, the number of conserved chromosomal segments detected by 29 cattle whole chromosome painting probes was 35 for all Cervidae samples. The detailed analysis of the X chromosomes revealed two different morphological types within Cervidae. The first one, present in the Capreolinae is a sub/metacentric X with the structure more similar to the bovine X. The second type found in Cervini and Muntiacini is an acrocentric X which shows rearrangements in the proximal part that have not yet been identified within Ruminantia. Moreover, we characterised four repetitive sequences organized in heterochromatic blocks on sex chromosomes of the reindeer (Rangifer tarandus). We show that these repeats gave no hybridization signals to the chromosomes of the closely related moose (Alces alces) and are therefore specific to the reindeer.

The Two Micron All Sky Survey

NASA Astrophysics Data System (ADS)

Lonsdale, Carol

The 2 Micron All Sky Survey (2MASS) project, a collaboration between the University of Massachusetts (Dr. Mike Skrutskie, PI) and the Infrared Processing and Analysis Center, JPL/Caltech funded primarily by NASA and the NSF, will scan the entire sky utilizing two new, highly automated 1.3m telescopes at Mt. Hopkins, AZ and at CTIO, Chile. Each telescope simultaneously scans the sky at J, H and Ks with a three channel camera using 256x256 arrays of HgCdTe detectors to detect point sources brighter than about 1 mJy (to SNR=10), with a pixel size of 2.0 arcseconds. The data rate is $\\sim 19$ Gbyte per night, with a total processed data volume of 13 Tbytes of images and 0.5 Tbyte of tabular data. The 2MASS data is archived nightly into the Infrared Science Information System at IPAC, which is based on an Informix database engine, judged at the time of purchase to have the best commercially available indexing and parallelization flexibility, and a 5 Tbyte-capacity RAID multi-threaded disk system with multi-server shared disk architecture. I will discuss the challenges of processing and archiving the 2MASS data, and of supporting intelligent query access to them by the astronomical community across the net, including possibilities for cross-correlation with other remote data sets.

Cytogenetic analyses of five amazon lizard species of the subfamilies Teiinae and Tupinambinae and review of karyotyped diversity the family Teiidae.

PubMed

Carvalho, Natália Dayane Moura; Arias, Federico José; da Silva, Francijara Araújo; Schneider, Carlos Henrique; Gross, Maria Claudia

2015-01-01

Lizards of the family Teiidae (infraorder Scincomorpha) were formerly known as Macroteiidae. There are 13 species of such lizards in the Amazon, in the genera Ameiva (Meyer, 1795), Cnemidophorus (Wagler, 1830), Crocodilurus (Spix, 1825), Dracaena (Daudin, 1801), Kentropyx (Spix, 1825) and Tupinambis (Daudin, 1802). Cytogenetic studies of this group are restricted to karyotype macrostructure. Here we give a compilation of cytogenetic data of the family Teiidae, including classic and molecular cytogenetic analysis of Ameiva ameiva (Linnaeus, 1758), Cnemidophorus sp.1, Kentropyx calcarata (Spix, 1825), Kentropyx pelviceps (Cope, 1868) and Tupinambis teguixin (Linnaeus, 1758) collected in the state of Amazonas, Brazil. Ameiva ameiva, Kentropyx calcarata and Kentropyx pelviceps have 2n=50 chromosomes classified by a gradual series of acrocentric chromosomes. Cnemidophorus sp.1 has 2n=48 chromosomes with 2 biarmed chromosomes, 24 uniarmed chromosomes and 22 microchromosomes. Tupinambis teguixin has 2n=36 chromosomes, including 12 macrochromosomes and 24 microchromosomes. Constitutive heterochromatin was distributed in the centromeric and terminal regions in most chromosomes. The nucleolus organizer region was simple, varying in its position among the species, as evidenced both by AgNO3 impregnation and by hybridization with 18S rDNA probes. The data reveal a karyotype variation with respect to the diploid number, fundamental number and karyotype formula, which reinforces the importance of increasing chromosomal analyses in the Teiidae.

Cytogenetic analyses of five amazon lizard species of the subfamilies Teiinae and Tupinambinae and review of karyotyped diversity the family Teiidae

PubMed Central

Carvalho, Natália Dayane Moura; Arias, Federico José; da Silva, Francijara Araújo; Schneider, Carlos Henrique; Gross, Maria Claudia

2015-01-01

Abstract Lizards of the family Teiidae (infraorder Scincomorpha) were formerly known as Macroteiidae. There are 13 species of such lizards in the Amazon, in the genera Ameiva (Meyer, 1795), Cnemidophorus (Wagler, 1830), Crocodilurus (Spix, 1825), Dracaena (Daudin, 1801), Kentropyx (Spix, 1825) and Tupinambis (Daudin, 1802). Cytogenetic studies of this group are restricted to karyotype macrostructure. Here we give a compilation of cytogenetic data of the family Teiidae, including classic and molecular cytogenetic analysis of Ameiva ameiva (Linnaeus, 1758), Cnemidophorus sp.1, Kentropyx calcarata (Spix, 1825), Kentropyx pelviceps (Cope, 1868) and Tupinambis teguixin (Linnaeus, 1758) collected in the state of Amazonas, Brazil. Ameiva ameiva, Kentropyx calcarata and Kentropyx pelviceps have 2n=50 chromosomes classified by a gradual series of acrocentric chromosomes. Cnemidophorus sp.1 has 2n=48 chromosomes with 2 biarmed chromosomes, 24 uniarmed chromosomes and 22 microchromosomes. Tupinambis teguixin has 2n=36 chromosomes, including 12 macrochromosomes and 24 microchromosomes. Constitutive heterochromatin was distributed in the centromeric and terminal regions in most chromosomes. The nucleolus organizer region was simple, varying in its position among the species, as evidenced both by AgNO3 impregnation and by hybridization with 18S rDNA probes. The data reveal a karyotype variation with respect to the diploid number, fundamental number and karyotype formula, which reinforces the importance of increasing chromosomal analyses in the Teiidae. PMID:26753079

Educating for the Preservation of Dark Skies

NASA Astrophysics Data System (ADS)

Preston, Sandra Lee; Cianciolo, Frank; Wetzel, Marc; Finkelstein, Keely; Wren, William; Nance, Craig

2015-08-01

The stars at night really are big and bright deep in the heart of Texas at the McDonald Observatory near Fort Davis, Texas. Each year 80,000 visitors from all over the world make the pilgrimage to the Observatory to attend one of the three-times-a-week star parties. Many experience, for the first time, the humbling, splendor of a truly dark night sky. Over the last several years, the Observatory has experienced dramatic increases in visitation demonstrating the public’s appetite for science education, in general, and interest in the night sky, in particular. This increasing interest in astronomy is, ironically, occurring at a time when most of humanity’s skies are becoming increasingly light-polluted frustrating this natural interest. Dark skies and knowledgeable education and outreach staff are an important resource in maintaining the public’s interest in astronomy, support for astronomical research, and local tourism.This year Observatory educators were inspired by the observance of the International Year of Light to promote healthy outdoor lighting through its popular Astronomy Day distance learning program. This program reaches tens of thousands of K-12 students in Texas and other states with a message of how they can take action to preserve dark skies. As well, more than a thousand Boy Scouts visiting during the summer months receive a special program, which includes activities focusing on good lighting practices, thereby earning them credits toward an astronomy badge.The Observatory also offers a half-a-dozen K-12 teacher professional development workshops onsite each year, which provide about 90 teachers with dark skies information, best-practice lighting demonstrations, and red flashlights. Multi-year workshops for National Park and State of Texas Parks personnel are offered on dark sky preservation and sky interpretation at McDonald and a Dark Skies fund for retrofitting lights in the surrounding area has been established. The Observatory also uses

Big Sky and Greenhorn Drill Holes and CheMin X-ray Diffraction

NASA Image and Video Library

2015-12-17

The graph at right presents information from the NASA Curiosity Mars rover's onboard analysis of rock powder drilled from the "Big Sky" and "Greenhorn" target locations, shown at left. X-ray diffraction analysis of the Greenhorn sample inside the rover's Chemistry and Mineralogy (CheMin) instrument revealed an abundance of silica in the form of noncrystalline opal. The broad hump in the background of the X-ray diffraction pattern for Greenhorn, compared to Big Sky, is diagnostic of opal. The image of Big Sky at upper left was taken by the rover's Mars Hand Lens Imager (MAHLI) camera the day the hole was drilled, Sept. 29, 2015, during the mission's 1,119th Martian day, or sol. The Greenhorn hole was drilled, and the MAHLI image at lower left was taken, on Oct. 18, 2015 (Sol 1137). http://photojournal.jpl.nasa.gov/catalog/PIA20272

Measuring the influence of aerosols and albedo on sky polarization.

PubMed

Kreuter, A; Emde, C; Blumthaler, M

2010-11-01

All-sky distributions of the polarized radiance are measured using an automated fish-eye camera system with a rotating polarizer. For a large range of aerosol and surface albedo situations, the influence on the degree of polarization and sky radiance is investigated. The range of aerosol optical depth and albedo is 0.05-0.5 and 0.1-0.75, respectively. For this range of parameters, a reduction of the degree of polarization from about 0.7 to 0.4 was observed. The analysis is done for 90° scattering angle in the principal plane under clear sky conditions for a broadband channel of 450 ± 25 nm and solar zenith angles between 55° and 60°. Radiative transfer calculations considering three different aerosol mixtures are performed and and agree with the measurements within the statistical error.

Entire Sky

NASA Image and Video Library

1999-12-01

Aitoff projection of the three-color composite JHKs source count map of the entire sky, based on 95,851,173 stars with Ks 13.5. What appears most prominently are the Galactic plane and the Galactic bulge.

The Sky This Week - Naval Oceanography Portal

Science.gov Websites

section Advanced Search... Sections Home Time Earth Orientation Astronomy Meteorology Oceanography Ice You . Read More... The Sky This Week, 2018 April 17 - 24 Celebrate Dark-sky Week and Astronomy Day! Read More More... The Sky This Week, 2018 April 3 - 10 April is Astronomy Month...no fooling. Read More... The

Characterizing Sky Spectra Using SDSS BOSS Data

NASA Astrophysics Data System (ADS)

Florez, Lina Maria; Strauss, Michael A.

2018-01-01

In the optical/near-infrared spectra gathered by a ground-based telescope observing very faint sources, the strengths of the emission lines due to the Earth’s atmosphere can be many times larger than the fluxes of the sources we are interested in. Thus the limiting factor in faint-object spectroscopy is the degree to which systematics in the sky subtraction can be minimized. Longwards of 6000 Angstroms, the night-sky spectrum is dominated by multiple vibrational/rotational transitions of the OH radical from our upper atmosphere. While the wavelengths of these lines are the same in each sky spectrum, their relative strengths vary considerably as a function of time and position on the sky. The better we can model their strengths, the better we can hope to subtract them off. We expect that the strength of lines from common upper energy levels will be correlated with one another. We used flux-calibrated sky spectra from the Sloan Digital Sky Survey Baryon Oscillation Spectroscopic Survey (SDSS BOSS) to explore these correlations. Our aim is to use these correlations for creating improved sky subtraction algorithms for the Prime Focus Spectrograph (PFS) on the 8.2-meter Subaru Telescope. When PFS starts gathering data in 2019, it will be the most powerful multi-object spectrograph in the world. Since PFS will be gathering data on sources as faint as 24th magnitude and fainter, it's of upmost importance to be able to accurately measure and subtract sky spectra from the data that we receive.

Where is the sky?

NASA Astrophysics Data System (ADS)

Cohen, Ariel; Galili, Igal

2001-02-01

This paper discusses the origin of the concept of sky. It is shown to emerge from one's experience of the visual perception of nonluminous objects observed in/through the atmosphere during the daytime. The physical concept of visibility in the atmospheric environment underpins the perception of a flattened sky dome constructed by our mind. In addition, the Moon illusion receives a plausible explanation and both topics become appropriate for a conceptually oriented introduction course in physics and/or astronomy.

Studying the Sky/Planets Can Drown You in Images: Machine Learning Solutions at JPL/Caltech

NASA Technical Reports Server (NTRS)

Fayyad, U. M.

1995-01-01

JPL is working to develop a domain-independent system capable of small-scale object recognition in large image databases for science analysis. Two applications discussed are the cataloging of three billion sky objects in the Sky Image Cataloging and Analysis Tool (SKICAT) and the detection of possibly one million small volcanoes visible in the Magellan synthetic aperture radar images of Venus (JPL Adaptive Recognition Tool, JARTool).

Gender role behavior in children with XY karyotype and disorders of sex development.

PubMed

Jürgensen, Martina; Hiort, Olaf; Holterhus, Paul-Martin; Thyen, Ute

2007-03-01

Children exhibit gender-typical preferences in play, toys, activities and interests, and playmates. Several studies suggest that high concentrations of pre- and postnatal androgens contribute to male-typical behavior development, whereas female-typical behavior develops in the absence of high androgens levels. This study aims to explore the consequences of hypoandrogenization on gender-typical behavior in children who have an XY karyotype and disorder of sex development (DSD). Participants included 33 children (ages 2-12 years) with an XY karyotype and DSD; 21 reared as girls and 12 reared as boys. Children's preferred activities and interests and playmate preferences were assessed with parent report questionnaires, a structured free-play task, and choice of a toy to keep as a gift. Participant's responses were compared to those of children recruited in a pre-school and elementary school survey (N=166). In this study, the degree of hypoandrogenization as indicated by genital stage and diagnosis showed a significant relationship to nearly all of the gender-related behaviors assessed, supporting the hypothesis that masculinization of gender role behavior is a function of prenatal androgen exposure. Despite the fact that children with partial androgen effects reared as girls showed increased "boyish" behaviors, they did not show increased signs of gender identity confusion or instability on a group level. We conclude that androgen exposure plays a decisive role in the development of gender-typical behavior in children with XY karyotype and DSD conditions.

Impact of aerosols and clouds on decadal trends in all-sky solar radiation over the Netherlands (1966-2015)

NASA Astrophysics Data System (ADS)

Boers, Reinout; Brandsma, Theo; Pier Siebesma, A.

2017-07-01

A 50-year hourly data set of global shortwave radiation, cloudiness and visibility over the Netherlands was used to quantify the contribution of aerosols and clouds to the trend in yearly-averaged all-sky radiation (1.81 ± 1.07 W m-2 decade-1). Yearly-averaged clear-sky and cloud-base radiation data show large year-to-year fluctuations caused by yearly changes in the occurrence of clear and cloudy periods and cannot be used for trend analysis. Therefore, proxy clear-sky and cloud-base radiations were computed. In a proxy analysis hourly radiation data falling within a fractional cloudiness value are fitted by monotonic increasing functions of solar zenith angle and summed over all zenith angles occurring in a single year to produce an average. Stable trends can then be computed from the proxy radiation data. A functional expression is derived whereby the trend in proxy all-sky radiation is a linear combination of trends in fractional cloudiness, proxy clear-sky radiation and proxy cloud-base radiation. Trends (per decade) in fractional cloudiness, proxy clear-sky and proxy cloud-base radiation were, respectively, 0.0097 ± 0.0062, 2.78 ± 0.50 and 3.43 ± 1.17 W m-2. To add up to the all-sky radiation the three trends have weight factors, namely the difference between the mean cloud-base and clear-sky radiation, the clear-sky fraction and the fractional cloudiness, respectively. Our analysis clearly demonstrates that all three components contribute significantly to the observed trend in all-sky radiation. Radiative transfer calculations using the aerosol optical thickness derived from visibility observations indicate that aerosol-radiation interaction (ARI) is a strong candidate to explain the upward trend in the clear-sky radiation. Aerosol-cloud interaction (ACI) may have some impact on cloud-base radiation, but it is suggested that decadal changes in cloud thickness and synoptic-scale changes in cloud amount also play an important role.

Weak gravitational lensing analysis of Sloan Digital Sky Survey data

NASA Astrophysics Data System (ADS)

Mandelbaum, Rachel

Weak gravitational lensing, the distortion of images of distant galaxies due to gravitational deflection of light by more nearby masses, is a powerful tool that can address a wide variety of problems in astrophysics and cosmology. Observation of weak lensing requires large amounts of data since it can only be measured as an average over millions of galaxy shapes. This thesis focuses on lensing-related science that can be addressed using data from the Sloan Digital Sky Survey (SDSS), an excellent source of high-quality data. First, we discuss technical issues related to observing lensing in the data, with a description of our Reglens pipeline and constraints on systematic errors in current data. This is followed by a comparison of an analytical model known as the halo model (which can be used to relate the observed lensing signal to properties of the lens galaxies) against the lensing signal in N-body simulations. After these preliminaries, we address several very different science questions using our reductions of the SDSS data. The first is the question of intrinsic alignments of galaxies (alignments of galaxies on the sky due to local structure), which may be a contaminant for future lensing surveys that seek to determine the cosmological model to high precision. Second, we use a halo model analysis of the lensing signal to determine the relationship between galaxy luminosity, stellar mass, and halo mass, and to measure satellite fractions, all of which can help distinguish between models of galaxy formation. The third application we consider is methodology for the detection of dark matter halo ellipticity, including a first attempt at detecting it with SDSS lensing data, these results may be used to distinguish between cosmological models and learn more about galaxy intrinsic alignments. Finally, we measure the matter distributions around Luminous Red Galaxies (LRGs), which not only teaches us about the properties of these galaxies, but also gives us information

Scanning sky monitor (SSM) onboard AstroSat

NASA Astrophysics Data System (ADS)

Ramadevi, M. C.; Seetha, S.; Bhattacharya, Dipankar; Ravishankar, B. T.; Sitaramamurthy, N.; Meena, G.; Sharma, M. Ramakrishna; Kulkarni, Ravi; Babu, V. Chandra; Kumar; Singh, Brajpal; Jain, Anand; Yadav, Reena; Vaishali, S.; Ashoka, B. N.; Agarwal, Anil; Balaji, K.; Nagesh, G.; Kumar, Manoj; Gaan, Dhruti Ranjan; Kulshresta, Prashanth; Agarwal, Pankaj; Sebastian, Mathew; Rajarajan, A.; Radhika, D.; Nandi, Anuj; Girish, V.; Agarwal, Vivek Kumar; Kushwaha, Ankur; Iyer, Nirmal Kumar

2017-10-01

Scanning Sky Monitor (SSM) onboard AstroSat is an Xray sky monitor in the soft X-ray band designed with a large field of view to detect and locate transient X-ray sources and alert the astronomical community about interesting phenomena in the X-ray sky. SSM comprises position sensitive proportional counters with 1D coded mask for imaging. There are three detector units mounted on a platform capable of rotation which helps covering about 50% of the sky in one full rotation. This paper discusses the elaborate details of the instrument and few immediate results from the instrument after launch.

Daytime sky polarization calibration limitations

NASA Astrophysics Data System (ADS)

Harrington, David M.; Kuhn, Jeffrey R.; Ariste, Arturo López

2017-01-01

The daytime sky has recently been demonstrated as a useful calibration tool for deriving polarization cross-talk properties of large astronomical telescopes. The Daniel K. Inouye Solar Telescope and other large telescopes under construction can benefit from precise polarimetric calibration of large mirrors. Several atmospheric phenomena and instrumental errors potentially limit the technique's accuracy. At the 3.67-m AEOS telescope on Haleakala, we performed a large observing campaign with the HiVIS spectropolarimeter to identify limitations and develop algorithms for extracting consistent calibrations. Effective sampling of the telescope optical configurations and filtering of data for several derived parameters provide robustness to the derived Mueller matrix calibrations. Second-order scattering models of the sky show that this method is relatively insensitive to multiple-scattering in the sky, provided calibration observations are done in regions of high polarization degree. The technique is also insensitive to assumptions about telescope-induced polarization, provided the mirror coatings are highly reflective. Zemax-derived polarization models show agreement between the functional dependence of polarization predictions and the corresponding on-sky calibrations.

SkyProbeBV: dual-color absolute sky transparency monitor to optimize science operations

NASA Astrophysics Data System (ADS)

Cuillandre, Jean-Charles; Magnier, Eugene; Sabin, Dan; Mahoney, Billy

2008-07-01

Mauna Kea (4200 m elevation, Hawaii) is known for its pristine seeing conditions, but sky transparency can be an issue for science operations: 25% of the nights are not photometric, a cloud coverage mostly due to high-altitude thin cirrus. The Canada-France-Hawaii Telescope (CFHT) is upgrading its real-time sky transparency monitor in the optical domain (V-band) into a dual-color system by adding a B-band channel and redesigning the entire optical and mechanical assembly. Since 2000, the original single-channel SkyProbe has gathered one exposure every minute during each observing night using a small CCD camera with a very wide field of view (35 sq. deg.) encompassing the region pointed by the telescope for science operations, and exposures long enough (30 seconds) to capture at least 100 stars of Hipparcos' Tychos catalog at high galactic latitudes (and up to 600 stars at low galactic latitudes). A key advantage of SkyProbe over direct thermal infrared imaging detection of clouds, is that it allows an accurate absolute measurement, within 5%, of the true atmospheric absorption by clouds affecting the data being gathered by the telescope's main science instrument. This system has proven crucial for decision making in the CFHT queued service observing (QSO), representing today 95% of the telescope time: science exposures taken in non-photometric conditions are automatically registered for being re-observed later on (at 1/10th of the original exposure time per pointing in the observed filters) to ensure a proper final absolute photometric calibration. If the absorption is too high, exposures can be repeated, or the observing can be done for a lower ranked science program. The new dual color system (simultaneous B & V bands) will allow a better characterization of the sky properties above Mauna Kea and should enable a better detection of the thinner cirrus (absorption down to 0.02 mag., i.e. 2%). SkyProbe is operated within the Elixir pipeline, a collection of tools

Custom Sky-Image Mosaics from NASA's Information Power Grid

NASA Technical Reports Server (NTRS)

Jacob, Joseph; Collier, James; Craymer, Loring; Curkendall, David

2005-01-01

yourSkyG is the second generation of the software described in yourSky: Custom Sky-Image Mosaics via the Internet (NPO-30556), NASA Tech Briefs, Vol. 27, No. 6 (June 2003), page 45. Like its predecessor, yourSkyG supplies custom astronomical image mosaics of sky regions specified by requesters using client computers connected to the Internet. Whereas yourSky constructs mosaics on a local multiprocessor system, yourSkyG performs the computations on NASA s Information Power Grid (IPG), which is capable of performing much larger mosaicking tasks. (The IPG is high-performance computation and data grid that integrates geographically distributed 18 NASA Tech Briefs, September 2005 computers, databases, and instruments.) A user of yourSkyG can specify parameters describing a mosaic to be constructed. yourSkyG then constructs the mosaic on the IPG and makes it available for downloading by the user. The complexities of determining which input images are required to construct a mosaic, retrieving the required input images from remote sky-survey archives, uploading the images to the computers on the IPG, performing the computations remotely on the Grid, and downloading the resulting mosaic from the Grid are all transparent to the user

Analysis of chromosomal abnormalities by CGH-array in patients with dysmorphic and intellectual disability with normal karyotype

PubMed Central

Pratte-Santos, Rodrigo; Ribeiro, Katyanne Heringer; Santos, Thainá Altoe; Cintra, Terezinha Sarquis

2016-01-01

ABSTRACT Objective To investigate chromosomal abnormalities by CGH-array in patients with dysmorphic features and intellectual disability with normal conventional karyotype. Methods Retrospective study, carried out from January 2012 to February 2014, analyzing the CGH-array results of 39 patients. Results Twenty-six (66.7%) patients had normal results and 13 (33.3%) showed abnormal results - in that, 6 (15.4%) had pathogenic variants, 6 (15.4%) variants designated as uncertain and 1 (2.5%) non-pathogenic variants. Conclusion The characterization of the genetic profile by CGH-array in patients with intellectual disability and dysmorphic features enabled making etiologic diagnosis, followed by genetic counseling for families and specific treatment. PMID:27074231

The Python Sky Model: software for simulating the Galactic microwave sky

NASA Astrophysics Data System (ADS)

Thorne, B.; Dunkley, J.; Alonso, D.; Næss, S.

2017-08-01

We present a numerical code to simulate maps of Galactic emission in intensity and polarization at microwave frequencies, aiding in the design of cosmic microwave background experiments. This python code builds on existing efforts to simulate the sky by providing an easy-to-use interface and is based on publicly available data from the WMAP (Wilkinson Microwave Anisotropy Probe) and Planck satellite missions. We simulate synchrotron, thermal dust, free-free and anomalous microwave emission over the whole sky, in addition to the cosmic microwave background, and include a set of alternative prescriptions for the frequency dependence of each component, for example, polarized dust with multiple temperatures and a decorrelation of the signals with frequency, which introduce complexity that is consistent with current data. We also present a new prescription for adding small-scale realizations of these components at resolutions greater than current all-sky measurements. The usefulness of the code is demonstrated by forecasting the impact of varying foreground complexity on the recovered tensor-to-scalar ratio for the LiteBIRD satellite. The code is available at: https://github.com/bthorne93/PySM_public.

Scalable nuclear density functional theory with Sky3D

NASA Astrophysics Data System (ADS)

Afibuzzaman, Md; Schuetrumpf, Bastian; Aktulga, Hasan Metin

2018-02-01

In nuclear astrophysics, quantum simulations of large inhomogeneous dense systems as they appear in the crusts of neutron stars present big challenges. The number of particles in a simulation with periodic boundary conditions is strongly limited due to the immense computational cost of the quantum methods. In this paper, we describe techniques for an efficient and scalable parallel implementation of Sky3D, a nuclear density functional theory solver that operates on an equidistant grid. Presented techniques allow Sky3D to achieve good scaling and high performance on a large number of cores, as demonstrated through detailed performance analysis on a Cray XC40 supercomputer.

Chromosome aberrations detected by conventional karyotyping using novel mitogens in chronic lymphocytic leukemia: Clinical and biologic correlations.

PubMed

Rigolin, Gian Matteo; del Giudice, Ilaria; Formigaro, Luca; Saccenti, Elena; Martinelli, Sara; Cavallari, Maurizio; Lista, Enrico; Tammiso, Elisa; Volta, Eleonora; Lupini, Laura; Bassi, Cristian; Bardi, Antonella; Sofritti, Olga; Daghia, Giulia; Cavazzini, Francesco; Marinelli, Marilisa; Tavolaro, Simona; Guarini, Anna; Negrini, Massimo; Foà, Robin; Cuneo, Antonio

2015-12-01

To clarify whether karyotype aberrations (KA) involving regions not covered by the standard fluorescence in situ hybridization (FISH) panel have independent prognostic relevance, we evaluated KA by conventional cytogenetics in a learning cohort (LC; n = 166) and a validation cohort (VC; n = 250) of untreated chronic lymphocytic leukemia (CLL) patients. In the VC, novel mitogens were used to improve metaphase generation and TP53, NOTCH1, and SF3B1 mutations were assessed. KA undetected by FISH were found in 35 and 35% of the cases in the LC and VC, respectively. In addition to FISH, KA allowed reclassification of 23 and 26% of cases in the LC and VC, respectively, into a higher cytogenetic risk group. By multivariate analysis, both in the LC and VC, KA other than isolated 13q deletion correlated with a shorter time to first treatment (TFT; P < 0.001 and 0.003, respectively), while a complex karyotype predicted a worse overall survival (OS, P = 0.015 and 0.010, respectively). In the VC, where a comprehensive biologic assessment was performed, a shorter TFT was also predicted by stage (P < 0.001), IGHV mutational status (P = 0.05), and del(17p)/TP53 mutations (P = 0.033) while stage (P = 0.023) and del(17p)/TP53 mutations (P = 0.024) independently predicted a shorter OS. FISH results did not independently impact on TFT and OS, in the LC and VC cohorts; this was also the case for NOTCH1 and SF3B1 mutations in the VC. We suggest that in CLL, conventional karyotyping with novel mitogens could be more effective than FISH for the detection of KA allowing for a more precise refinement of prognosis. © 2015 Wiley Periodicals, Inc.

Dark Skies: Local Success, Global Challenge

NASA Astrophysics Data System (ADS)

Lockwood, G. W.

2009-01-01

The Flagstaff, Arizona 1987 lighting code reduced the growth rate of man-made sky glow by a third. Components of the code include requirements for full cutoff lighting, lumens per acre limits in radial zones around observatories, and use of low-pressure sodium monochromatic lighting for roadways and parking lots. Broad public acceptance of Flagstaff's lighting code demonstrates that dark sky preservation has significant appeal and few visibility or public safety negatives. An inventory by C. Luginbuhl et al. of the light output and shielding of a sampling of various zoning categories (municipal, commercial, apartments, single-family residences, roadways, sports facilities, industrial, etc.), extrapolated over the entire city, yields a total output of 139 million lumens. Commercial and industrial sources account for 62% of the total. Outdoor sports lighting increases the total by 24% on summer evenings. Flagstaff's per capita lumen output is 2.5 times greater than the nominal 1,000 lumens per capita assumed by R. Garstang in his early sky glow modeling work. We resolved the discrepancy with respect to Flagstaff's measured sky glow using an improved model that includes substantial near ground attenuation by foliage and structures. A 2008 university study shows that astronomy contributes $250M annually to Arizona's economy. Another study showed that the application of lighting codes throughout Arizona could reduce energy consumption significantly. An ongoing effort led by observatory directors statewide will encourage lighting controls in currently unregulated metropolitan areas whose growing sky glow threatens observatory facilities more than 100 miles away. The national press (New York Times, the New Yorker, the Economist, USA Today, etc.) have publicized dark sky issues but frequent repetition of the essential message and vigorous action will be required to steer society toward darker skies and less egregious waste.

The Second Catalog of Flaring Gamma-Ray Sources from the Fermi All-sky Variability Analysis

NASA Astrophysics Data System (ADS)

Abdollahi, S.; Ackermann, M.; Ajello, M.; Albert, A.; Baldini, L.; Ballet, J.; Barbiellini, G.; Bastieri, D.; Becerra Gonzalez, J.; Bellazzini, R.; Bissaldi, E.; Blandford, R. D.; Bloom, E. D.; Bonino, R.; Bottacini, E.; Bregeon, J.; Bruel, P.; Buehler, R.; Buson, S.; Cameron, R. A.; Caragiulo, M.; Caraveo, P. A.; Cavazzuti, E.; Cecchi, C.; Chekhtman, A.; Cheung, C. C.; Chiaro, G.; Ciprini, S.; Conrad, J.; Costantin, D.; Costanza, F.; Cutini, S.; D'Ammando, F.; de Palma, F.; Desai, A.; Desiante, R.; Digel, S. W.; Di Lalla, N.; Di Mauro, M.; Di Venere, L.; Donaggio, B.; Drell, P. S.; Favuzzi, C.; Fegan, S. J.; Ferrara, E. C.; Focke, W. B.; Franckowiak, A.; Fukazawa, Y.; Funk, S.; Fusco, P.; Gargano, F.; Gasparrini, D.; Giglietto, N.; Giomi, M.; Giordano, F.; Giroletti, M.; Glanzman, T.; Green, D.; Grenier, I. A.; Grove, J. E.; Guillemot, L.; Guiriec, S.; Hays, E.; Horan, D.; Jogler, T.; Jóhannesson, G.; Johnson, A. S.; Kocevski, D.; Kuss, M.; La Mura, G.; Larsson, S.; Latronico, L.; Li, J.; Longo, F.; Loparco, F.; Lovellette, M. N.; Lubrano, P.; Magill, J. D.; Maldera, S.; Manfreda, A.; Mayer, M.; Mazziotta, M. N.; Michelson, P. F.; Mitthumsiri, W.; Mizuno, T.; Monzani, M. E.; Morselli, A.; Moskalenko, I. V.; Negro, M.; Nuss, E.; Ohsugi, T.; Omodei, N.; Orienti, M.; Orlando, E.; Paliya, V. S.; Paneque, D.; Perkins, J. S.; Persic, M.; Pesce-Rollins, M.; Petrosian, V.; Piron, F.; Porter, T. A.; Principe, G.; Rainò, S.; Rando, R.; Razzano, M.; Razzaque, S.; Reimer, A.; Reimer, O.; Sgrò, C.; Simone, D.; Siskind, E. J.; Spada, F.; Spandre, G.; Spinelli, P.; Stawarz, L.; Suson, D. J.; Takahashi, M.; Tanaka, K.; Thayer, J. B.; Thompson, D. J.; Torres, D. F.; Torresi, E.; Tosti, G.; Troja, E.; Vianello, G.; Wood, K. S.

2017-09-01

We present the second catalog of flaring gamma-ray sources (2FAV) detected with the Fermi All-sky Variability Analysis (FAVA), a tool that blindly searches for transients over the entire sky observed by the Large Area Telescope (LAT) on board the Fermi Gamma-ray Space Telescope. With respect to the first FAVA catalog, this catalog benefits from a larger data set, the latest LAT data release (Pass 8), as well as from an improved analysis that includes likelihood techniques for a more precise localization of the transients. Applying this analysis to the first 7.4 years of Fermi observations, and in two separate energy bands 0.1-0.8 GeV and 0.8-300 GeV, a total of 4547 flares were detected with significance greater than 6σ (before trials), on the timescale of one week. Through spatial clustering of these flares, 518 variable gamma-ray sources were identified. Based on positional coincidence, likely counterparts have been found for 441 sources, mostly among the blazar class of active galactic nuclei. For 77 2FAV sources, no likely gamma-ray counterpart has been found. For each source in the catalog, we provide the time, location, and spectrum of each flaring episode. Studying the spectra of the flares, we observe a harder-when-brighter behavior for flares associated with blazars, with the exception of BL Lac flares detected in the low-energy band. The photon indexes of the flares are never significantly smaller than 1.5. For a leptonic model, and under the assumption of isotropy, this limit suggests that the spectrum of freshly accelerated electrons is never harder than p˜ 2.

Spectral and Spatial UV Sky Radiance Measurements at a Seaside Resort Under Clear Sky and Slightly Overcast Conditions.

PubMed

Sandmann, Henner; Stick, Carsten

2014-01-01

Spatial measurements of the diffusely scattered sky radiance at a seaside resort under clear sky and slightly overcast conditions have been used to calculate the sky radiance distribution across the upper hemisphere. The measurements were done in the summer season when solar UV radiation is highest. The selected wavelengths were 307, 350 and 550 nm representing the UVB, UVA and VIS band. Absolute values of radiance differ considerably between the wavelengths. Normalizing the measured values by use of direct solar radiance made the spatial distributions of unequal sky radiance comparable. The results convey a spatial impression of the different distributions of the radiance at the three wavelengths. Relative scattered radiance intensity is one order of magnitude greater in UVB than in VIS, whereas in UVA lies roughly in between. Under slightly overcast conditions scattered radiance is increased at all three wavelengths by about one order of magnitude. These measurements taken at the seaside underline the importance of diffuse scattered radiance. The effect of shading parts of the sky can be estimated from the distribution of sky radiance. This knowledge might be useful for sun seekers and in the treatment of people staying at the seaside for therapeutic purposes. © 2013 The American Society of Photobiology.

Karyotypes, heterochromatin, and physical mapping of 18S-26S rDNA in Cactaceae.

PubMed

Las Peñas, M L; Urdampilleta, J D; Bernardello, G; Forni-Martins, E R

2009-01-01

Karyotype analyses in members of the four Cactaceae subfamilies were performed. Numbers and karyotype formula obtained were: Pereskioideae = Pereskiaaculeata(2n = 22; 10 m + 1 sm), Maihuenioideae = Maihuenia patagonica (2n = 22, 9 m + 2 sm; 2n = 44, 18 m + 4 sm), Opuntioideae = Cumulopuntia recurvata(2n = 44; 20 m + 2 sm), Cactoideae = Acanthocalycium spiniflorum (2n = 22; 10 m + 1 sm),Echinopsis tubiflora (2n = 22; 10 m + 1 sm), Trichocereus candicans (2n = 22, 22 m). Chromosomes were small, the average chromosome length was 2.3 mum. Diploid species and the tetraploid C. recurvata had one terminal satellite, whereas the remaining tetraploid species showed four satellited chromosomes. Karyotypes were symmetrical. No CMA(-)/DAPI(+) bands were detected, but CMA(+)/DAPI(-) bands associated with NOR were always found. Pericentromeric heterochromatin was found in C. recurvata, A. spiniflorum, and the tetraploid cytotype of M. patagonica. The locations of the 18S-26S rDNA sites in all species coincided with CMA(+)/DAPI(-) bands; the same occurred with the sizes and numbers of signals for each species. This technique was applied for the first time in metaphase chromosomes in cacti. NOR-bearing pair no.1 may be homeologous in all species examined. In Cactaceae, the 18S-26S loci seem to be highly conserved. Copyright 2009 S. Karger AG, Basel.

Angles in the Sky?

NASA Astrophysics Data System (ADS)

Behr, Bradford

2005-09-01

Tycho Brahe lived and worked in the late 1500s before the telescope was invented. He made highly accurate observations of the positions of planets, stars, and comets using large angle-measuring devices of his own design. You can use his techniques to observe the sky as well. For example, the degree, a common unit of measurement in astronomy, can be measured by holding your fist at arm's length up to the sky. Open your fist and observe the distance across the sky covered by the width of your pinky fingernail. That is, roughly, a degree! After some practice, and knowing that one degree equals four minutes, you can measure elapsed time by measuring the angle of the distance that the Moon appears to have moved and multiplying that number by four. You can also figure distances and sizes of things. These are not precise measurements, but rough estimates that can give you a "close-enough" answer.

Measuring the influence of aerosols and albedo on sky polarization

PubMed Central

Kreuter, A.; Emde, C.; Blumthaler, M.

2010-01-01

All-sky distributions of the polarized radiance are measured using an automated fish-eye camera system with a rotating polarizer. For a large range of aerosol and surface albedo situations, the influence on the degree of polarization and sky radiance is investigated. The range of aerosol optical depth and albedo is 0.05–0.5 and 0.1–0.75, respectively. For this range of parameters, a reduction of the degree of polarization from about 0.7 to 0.4 was observed. The analysis is done for 90° scattering angle in the principal plane under clear sky conditions for a broadband channel of 450 ± 25 nm and solar zenith angles between 55° and 60°. Radiative transfer calculations considering three different aerosol mixtures are performed and and agree with the measurements within the statistical error. PMID:24068851

Planck View of the Whole Sky

NASA Image and Video Library

2010-07-06

This image of the microwave sky was synthesized using data spanning the range of light frequencies detected by ESA Planck. A vast portion of the sky is dominated by the diffuse emission from gas and dust in our Milky Way galaxy.

[Karyotypic comparison of five species of Lutzomyia (diptera: psychodidae) of the series townsendi and the verrucarum group in Colombia].

PubMed

Escovar, Jesús; Ferro, Cristina; Cárdenas, Estrella; Bello, Felio

2002-12-01

Cytogenetic characteristics were established for five native species of phlebotomine sand flies (Lutzomyia, series townsendi, verrucarum group): Lutzomyia longiflocosa, Lutzomyia townsendi, Lutzomyia spinicrassa, Lutzomyia torvida and Lutzomyia youngi. Karyotypes and chromosomal morphometry were compared. Using the squash technique, brain tissues from late 4th instar larvae provided the necessary mitotic chromosomes. Chromosomal measurements were made on the following chromosomal characteristics: short arm, long arm, arm ratio, total length, relative length, centromeric index and relative length average of chromosomes. Chromosomes were classified according to their morphometry and position of the centromere. The taxonomic distance was calculated, and the relationships among the species displayed in a phenogram. All five species possessed four pairs of chromosomes as diploid number (2N = 8). None of the karyotypes indicated presence of heteromorphic chromosomes. Statistical analysis of the morphometric data showed highly significant differences among the chromosomes pairs of the five species. However, the total length of the genome was very similar, with the exception of L. youngi. In conclusion, these closely related species were distinguishable at cytological level.

Correlated noise in the COBE DMR sky maps

NASA Technical Reports Server (NTRS)

Lineweaver, C. H.; Smoot, G. F.; Bennett, C. L.; Wright, E. L.; Tenorio, L.; Kogut, A.; Keegstra, P. B.; Hinshaw, G.; Banday, A. J.

1994-01-01

The Cosmic Background Explorer Satellite Differential Radiometer (COBE DMR) sky maps contain low-level correlated noise. We obtain estimates of the amplitude and pattern of the correlated noise from three techniques: angular averages of the covariance matrix, Monte Carlo simulations of two-point correlation functions and direct analysis of the DMR maps. The results from the three methods are mutually consistent. The noise covariance matrix of a DMR sky maps is diagonal to an accuracy of better than 1%. For a given sky pixel, the dominant noise covariance occure with the ring of pixels at an angular separation of 60 deg due to the 60 deg separation of the DMR horns. The mean covariance at 60 deg is 0.45%((sup +0.18)(sub -0.14)) of the mean variance. Additionally, the variance in a given pixel is 0.7% greater than would be expected from a single beam experiment with the same noise properties. Autocorrelation functions suffer from a approximately 1.5 sigma positive bias at 60 deg while cross-correlations have no bias. Published COBE DMR results are not significantly affected by correlated noise.

Generation and multiplication of plantlets from callus derived from Haplopappus gracilus (Nutt.) Gray and their karyotype analysis

NASA Technical Reports Server (NTRS)

Kann, R. P.; O'Connor, S. A.; Levine, H. G.; Krikorian, A. D.

1991-01-01

Unopened flower heads of Haplopappus gracilis (2n = 4) provided primary explants for callus production and subsequent induction of organized growth. Callus was initiated from small (3-5 mm in length) floral buds with benzylaminopurine (BAP) (44.4 micromoles; 10 mg/l) and naphthalene acetic acid (NAA) (0.54 micromole; 0.1 mg/l). Lowering the BAP level to 4.44 micromoles (1 mg/l) but maintaining the NAA level, gave rise to organized but highly compressed shoot growing points from an otherwise undifferentiated callus mass. Shoots selected from such cultures were maintainable and could be proliferated by growing 1-1.5-cm stem tip cuttings on Murashige and Skoog basal medium (solidified with agar) containing 0.444 micromole (0.1 mg/l) BAP and 0.054 micromole (0.01 mg/l) NAA. The stem tip multiplication rates obtainable by these means permit reliable strategies for shoot multiplication or production of rooted plantlets. Prolonged subculture and maintenance of shoots on growth regulator-free medium leads to in vitro flowering and greatly reduces rooting capacity. Karyotype analysis of chromosomes from root tip cells at metaphase and chromosome measurements show that karyologically uniform plantlets (based on chromosome number and morphology) can be obtained.

T-cell acute lymphoblastic leukemia associated with complex karyotype and SET-NUP214 rearrangement: a case study and review of the literature.

PubMed

Lee, Sang-Guk; Park, Tae Sung; Cho, Sun Young; Lim, Gayoung; Park, Gwang Jin; Oh, Seung Hwan; Cho, Eun Hae; Chong, So Young; Huh, Ji Young

2011-01-01

SET-NUP214 rearrangements have been rarely reported in T-cell acute lymphoblastic leukemia (T-ALL), acute undifferentiated leukemia, and acute myeloid leukemia, and most documented cases have been associated with normal karyotypes in conventional cytogenetic analyses. Here, we describe a novel case of T-ALL associated with a mediastinal mass and a SET-NUP214 rearrangement, which was masked by a complex karyotype at the time of initial diagnosis. Using multiplex reverse transcriptase-polymerase chain reaction analysis, we detected a cryptic SET-NUP214 rearrangement in our patient. As only 11 cases (including the present study) of T-ALL with SET-NUP214 rearrangement have been reported, the clinical features and treatment outcomes have not been fully determined. Further studies are necessary to evaluate the incidence of SET-NUP214 rearrangement in T-ALL patients and the treatment responses as well as prognosis of these patients.

NRAO Makes Available VLA Sky Survey Maps

NASA Astrophysics Data System (ADS)

1994-06-01

An original and comprehensive data set potentially full of scientific surprises now is available to astronomers, students and the public through the information superhighway. Radio images of the sky produced by the Very Large Array radio telescope -- one of the premier astronomical instruments in the world -- as part of a massive survey now are stored in an electronic repository avail- able over the Internet computer communications network. "Each of these sensitive new sky maps shows about a thou- sand radio-emitting objects, most of which have never been seen before," said Dr. J. J. Condon, leader of the National Radio As- tronomy Observatory (NRAO) survey team. "We are releasing them as soon as they are completed because they contain more data than we could possibly analyze by ourselves." "By using electronic distribution, we can open this tre- mendous resource of information for computer analysis by all as- tronomers immediately, without waiting for traditional publication," Condon added. The radio images are copyright NRAO/ AUI. Permission is granted for use of the material without charge for scholarly, educational and private non-commercial purposes. "It is entirely conceivable -- even probable -- that valuable discoveries will be made by students or amateur astrono- mers who devote the time to study these maps carefully," said team member Dr. W. D. Cotton. "Making this new information available electronically means that more people can participate in adding to its scientific value." The maps are a product of the NRAO VLA Sky Survey (NVSS), which began its observational phase in September of 1993 and will cover 82 percent of the sky when completed by the end of 1996. The NVSS is expected to produce a catalog of more than two million ra- dio-emitting objects in the sky, and it is the first sky survey sensitive to linearly polarized emission from radio sources beyond our own Milky Way galaxy. "The NVSS is being made as a service to the entire astronomical

Sky Sculpture.

ERIC Educational Resources Information Center

Woody, Howard

1980-01-01

Described is a five-day workshop in the new environmental art form of sky sculpture, which was presented at Wingfield High School in Jackson, Mississippi. Included are daily activities and the design considerations faced by students when planning their balloon creations for flight. (SJL)

Karyotype characterization and comparison of three hexaploid species of Bromus Linnaeus, 1753 (Poaceae)

PubMed Central

Artico, Leonardo Luís; Mazzocato, Ana Cristina; Ferreira, Juliano Lino; Carvalho, Carlos Roberto; Clarindo, Wellington Ronildo

2017-01-01

Abstract Chromosome morphometry and nuclear DNA content are useful data for cytotaxonomy and to understand the evolutionary history of different taxa. For the genus Bromus Linnaeus, 1753, distinct ploidy levels have been reported, occurring from diploid to duodecaploid species. The geographic distribution of Bromus species has been correlated with chromosome number and ploidy level. In this study, the aims were to determine the nuclear genome size and characterize the karyotype of the South American Bromus species: Bromus auleticus Trinius ex Nees, 1829, Bromus brachyanthera Döll, 1878 and Bromus catharticus Vahl, 1791. The mean nuclear 2C value ranged from 2C = 12.64 pg for B. catharticus to 2C = 17.92 pg for B. auleticus, meaning a maximum variation of 2C = 5.28 pg, equivalent to 41.70%. Despite this significant difference in 2C value, the three species exhibit the same chromosome number, 2n = 6x = 42, which confirms their hexaploid origin. Corroborating the genome size, the chromosome morphometry (total, short- and long-arm length) and, consequently, the class differed among the karyotypes of the species. Based on the first karyograms for these Bromus species, some morphologically similar and several distinct chromosome pairs were found. Therefore, the karyotype characterization confirmed the hexaploid origin of the studied Bromus species, which differ in relation to the karyogram and the nuclear 2C value. Considering this, cytogenetics and flow cytometry can be used to discriminate Bromus species, contributing to taxonomy and systematic studies and providing information on the evolutionary history of this taxa. PMID:28919960

Karyotype characterization and comparison of three hexaploid species of Bromus Linnaeus, 1753 (Poaceae).

PubMed

Artico, Leonardo Luís; Mazzocato, Ana Cristina; Ferreira, Juliano Lino; Carvalho, Carlos Roberto; Clarindo, Wellington Ronildo

2017-01-01

Chromosome morphometry and nuclear DNA content are useful data for cytotaxonomy and to understand the evolutionary history of different taxa. For the genus Bromus Linnaeus, 1753, distinct ploidy levels have been reported, occurring from diploid to duodecaploid species. The geographic distribution of Bromus species has been correlated with chromosome number and ploidy level. In this study, the aims were to determine the nuclear genome size and characterize the karyotype of the South American Bromus species: Bromus auleticus Trinius ex Nees, 1829, Bromus brachyanthera Döll, 1878 and Bromus catharticus Vahl, 1791. The mean nuclear 2C value ranged from 2C = 12.64 pg for B. catharticus to 2C = 17.92 pg for B. auleticus , meaning a maximum variation of 2C = 5.28 pg, equivalent to 41.70%. Despite this significant difference in 2C value, the three species exhibit the same chromosome number, 2n = 6x = 42, which confirms their hexaploid origin. Corroborating the genome size, the chromosome morphometry (total, short- and long-arm length) and, consequently, the class differed among the karyotypes of the species. Based on the first karyograms for these Bromus species, some morphologically similar and several distinct chromosome pairs were found. Therefore, the karyotype characterization confirmed the hexaploid origin of the studied Bromus species, which differ in relation to the karyogram and the nuclear 2C value. Considering this, cytogenetics and flow cytometry can be used to discriminate Bromus species, contributing to taxonomy and systematic studies and providing information on the evolutionary history of this taxa.

An optical to IR sky brightness model for the LSST

NASA Astrophysics Data System (ADS)

Yoachim, Peter; Coughlin, Michael; Angeli, George Z.; Claver, Charles F.; Connolly, Andrew J.; Cook, Kem; Daniel, Scott; Ivezić, Željko; Jones, R. Lynne; Petry, Catherine; Reuter, Michael; Stubbs, Christopher; Xin, Bo

2016-07-01

To optimize the observing strategy of a large survey such as the LSST, one needs an accurate model of the night sky emission spectrum across a range of atmospheric conditions and from the near-UV to the near-IR. We have used the ESO SkyCalc Sky Model Calculator1, 2 to construct a library of template spectra for the Chilean night sky. The ESO model includes emission from the upper and lower atmosphere, scattered starlight, scattered moonlight, and zodiacal light. We have then extended the ESO templates with an empirical fit to the twilight sky emission as measured by a Canon all-sky camera installed at the LSST site. With the ESO templates and our twilight model we can quickly interpolate to any arbitrary sky position and date and return the full sky spectrum or surface brightness magnitudes in the LSST filter system. Comparing our model to all-sky observations, we find typical residual RMS values of +/-0.2-0.3 magnitudes per square arcsecond.

The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora)

PubMed Central

Beklemisheva, Violetta R.; Perelman, Polina L.; Lemskaya, Natalya A.; Kulemzina, Anastasia I.; Proskuryakova, Anastasia A.; Burkanov, Vladimir N.; Graphodatsky, Alexander S.

2016-01-01

Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae–monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular. PMID:26821159

A dispermic chimera was identified in a healthy man with mixed field agglutination reaction in ABO blood grouping and mosaic 46, XY/46, XX karyotype.

PubMed

Hong, Xiaozhen; Ying, Yanlin; Xu, Xianguo; Liu, Ying; Chen, Zhimei; Lan, Xiaofei; Ma, Kairong; He, Ji; Zhu, Faming; Lv, Hangjun; Yan, Lixing

2013-04-01

Chimerism is the presence of two or more genetically distinct cell populations in one organism. Here, we reported the identification of dispermic chimerism in a 25-year-old male. Blood grouping was performed with standard gel centrifugation test cards. ABO and HLA-A,-B,-C,-DRB1 and -DQB1 loci genotyping was determined with PCR sequence-based typing. A quantitative analysis of dual red cells populations was measured by flow cytometer. The karyotype was analyzed by G-banded chromosomes. Short tandem repeat (STR) analysis was performed on blood, buccal mucosal and hair shafts samples. A mixed-field agglutination with anti-B antibody was observed with gel centrifugation tests, which showed a double populations of O and B groups RBCs. Two groups RBCs were also observed by flow cytometer with nearly 90% O group cells and 10% B group cells. The normal O01,O02,B101 alleles were identified in DNA sample of the proband. STR analysis revealed three alleles for D8S1179,D3S1358,TH01,D13S317,D16S539,D2S1338,D19S433,TPOX and D18S51 loci. HLA-DRB1 and -DQB1 loci had three alleles and a karyotypic mosaic was found with 60% 46, XY and 40% 46, XX karyotype in the proband. In all studies, the third allele was attributable to a dual paternal contribution. A individual with dispermic chimerism was identified, which would generate by fertilization of an oocyte and the corresponding second polar body by two different sperms. Copyright © 2012 Elsevier Ltd. All rights reserved.

Citizen Sky, Solving the Mystery of epsilon Aurigae

NASA Astrophysics Data System (ADS)

Turner, Rebecca; Price, A.; Kloppenborg, B.; Henden, A.

2010-01-01

Citizen Sky is a multi-year, NSF funded citizen science project involving the bright star eps Aur. The project was conceived by the IYA 2009 working group on Research Experiences for Students, Teachers, and Citizen-Scientists. Citizen Sky goes beyond simple observing to include a major data analysis component. The goal is to introduce the participant to the full scientific process from background research to paper writing for a peer-reviewed journal. It begins with a 10 Star Training Program of several types of binary and transient variable stars that are easy to observe from suburban locations with the naked eye. Participants then move on to monitoring the rare and mysterious 2009-2011 eclipse (already underway) of epsilon Aurigae. This object undergoes eclipses only every 27.1 years and each eclipse lasts nearly two years. The star is bright enough to be seen with the naked eye from most urban areas. Training will be provided in observing techniques as well as basic data analysis of photometric and visual datasets (light curve and period analysis). The project also involves two public workshops, one on observing (already held in August of 2009) and one on data analysis and scientific paper writing (to be held in 2010.) This project has been made possible by the National Science Foundation.

Infrared Sky Surveys

NASA Astrophysics Data System (ADS)

Price, Stephan D.

2009-02-01

A retrospective is given on infrared sky surveys from Thomas Edison’s proposal in the late 1870s to IRAS, the first sensitive mid- to far-infrared all-sky survey, and the mid-1990s experiments that filled in the IRAS deficiencies. The emerging technology for space-based surveys is highlighted, as is the prominent role the US Defense Department, particularly the Air Force, played in developing and applying detector and cryogenic sensor advances to early mid-infrared probe-rocket and satellite-based surveys. This technology was transitioned to the infrared astronomical community in relatively short order and was essential to the success of IRAS, COBE and ISO. Mention is made of several of the little known early observational programs that were superseded by more successful efforts.

Spatial Model of Sky Brightness Magnitude in Langkawi Island, Malaysia

NASA Astrophysics Data System (ADS)

Redzuan Tahar, Mohammad; Kamarudin, Farahana; Umar, Roslan; Khairul Amri Kamarudin, Mohd; Sabri, Nor Hazmin; Ahmad, Karzaman; Rahim, Sobri Abdul; Sharul Aikal Baharim, Mohd

2017-03-01

Sky brightness is an essential topic in the field of astronomy, especially for optical astronomical observations that need very clear and dark sky conditions. This study presents the spatial model of sky brightness magnitude in Langkawi Island, Malaysia. Two types of Sky Quality Meter (SQM) manufactured by Unihedron are used to measure the sky brightness on a moonless night (or when the Moon is below the horizon), when the sky is cloudless and the locations are at least 100 m from the nearest light source. The selected locations are marked by their GPS coordinates. The sky brightness data obtained in this study were interpolated and analyzed using a Geographic Information System (GIS), thus producing a spatial model of sky brightness that clearly shows the dark and bright sky areas in Langkawi Island. Surprisingly, our results show the existence of a few dark sites nearby areas of high human activity. The sky brightness of 21.45 mag arcsec{}-2 in the Johnson-Cousins V-band, as the average of sky brightness equivalent to 2.8 × {10}-4{cd} {{{m}}}-2 over the entire island, is an indication that the island is, overall, still relatively dark. However, the amount of development taking place might reduce the number in the near future as the island is famous as a holiday destination.

Bargaining for Open Skies

NASA Technical Reports Server (NTRS)

Wojahn, Oliver W.

2001-01-01

In this paper we analyze the bargaining problem between countries when negotiating bilateral air service agreements. To do so, we use the methods of bargaining and game theory. We give special attention to the case where a liberal minded country is trying to convince a less liberal country to agree to bilateral open skies, and the liberal country might also unilaterally open up its market. The following analysis is positive in the sense that the results help explain and predict the outcome of negotiations under different payoffs and structures of the bargaining process. They are normative in the sense that adequate manipulation of the bargaining conditions can ensure a desired outcome.

"Let There Be Night" Advocates Dark Skies

NASA Astrophysics Data System (ADS)

Bueter, Chuck

2008-05-01

Let There Be Night is an interactive planetarium program that supports a community-wide experiment to quantify local sky glow. In the planetarium, visitors will experience three aspects of light pollution--glare, sky glow, and light trespass--and decide whether and how to confront dark sky issues. Planetarians can select optional recorded stories and lessons to complement live demonstrations or star talks. As a companion experiment, students in grades 3-8 from one school district will then submit their backyard observations of Orion's limiting magnitude to the 2009 Globe at Night star hunt while small student teams concurrently quantify sky glow from each schoolyard with hand-held meters. After mapping their results and having classroom discussions, students will present their findings to the School Board. Material compiled and created for the program will be available for other dark sky advocates at www.LetThereBeNight.com, while large digital files will be distributed on disk through two planetarium associations. A 2008 Toyota TAPESTRY grant has enticed significant professional support, additional funding, and in-kind contributions.

Spatiotemporal change of sky polarization during the total solar eclipse on 29 March 2006 in Turkey: polarization patterns of the eclipsed sky observed by full-sky imaging polarimetry.

PubMed

Sipocz, Brigitta; Hegedüs, Ramón; Kriska, György; Horváth, Gábor

2008-12-01

Using 180 degrees field-of-view (full-sky) imaging polarimetry, we measured the spatiotemporal change of the polarization of skylight during the total solar eclipse on 29 March 2006 in Turkey. We present our observations here on the temporal variation of the celestial patterns of the degree p and angle alpha of linear polarization of the eclipsed sky measured in the red (650 nm), green (550 nm), and blue (450 nm) parts of the spectrum. We also report on the temporal and spectral change of the positions of neutral (unpolarized, p = 0) points, and points with local minima or maxima of p of the eclipsed sky. Our results are compared with the observations performed by the same polarimetric technique during the total solar eclipse on 11 August 1999 in Hungary. Practically the same characteristics of celestial polarization were encountered during both eclipses. This shows that the observed polarization phenomena of the eclipsed sky may be general.

Karyotype evolution of giraffes (Giraffa camelopardalis) revealed by cross-species chromosome painting with Chinese muntjac (Muntiacus reevesi) and human (Homo sapiens) paints.

PubMed

Huang, L; Nesterenko, A; Nie, W; Wang, J; Su, W; Graphodatsky, A S; Yang, F

2008-01-01

Considering the giraffe (Giraffa camelopardalis, GCA, 2n = 30) as a primitive species, its comparative genomic data are critical for our understanding of the karyotype evolution of pecorans. Here, we have established genome-wide chromosomal homologies between giraffe, Chinese muntjac (Muntiacus reevesi, MRE, 2n = 46) and human (Homo sapiens, HSA, 2n = 46) with whole sets of chromosome-specific paints from Chinese muntjac and human, in addition to providing a high-resolution G-banding karyotype of giraffe. Chinese muntjac and human chromosome paints detected 32 and 45 autosomal homologs in the genome of giraffe, respectively. Our results suggest that it would require at least thirteen fissions, six fusions and three intrachromosomal rearrangements to 'transform' the 2n = 44 eutherian ancestral karyotype to the 2n = 58 pecoran ancestral karyotype. During giraffe evolution, some ancestral eutherian syntenies (i.e. association of HSA3/21, 4/8, 7/16, 14/15, 16/19 and two forms of 12/22) have been retained, while several derived syntenies (i.e. associations of human homologous segments 2/1, 2/9, 5/19, 4/12/22, 8/9, and 10/20) have been produced. The reduction of chromosome number in giraffe from the 2n = 58 pecoran ancestral karyotype could be primarily attributed to extensive Robertsonian translocations of ancestral chromosomal segments. More complex chromosomal rearrangements (including tandem fusion, centromere repositioning and pericentric inversion) have happened during the evolution of GCA2 and GCA8. Copyright 2008 S. Karger AG, Basel.

The New Progress of the Starry Sky Project of China

NASA Astrophysics Data System (ADS)

Wang, Xiaohua

2015-08-01

Since the 28th General Assembly of IAU, the SSPC team made new progress:1. Enhanced the function of the SSPC team-- Established the contact with IAU C50, IUCN Dark Skies Advisory Group, AWB and IDA,and undertakes the work of the IDA Beijing Chapter.-- Got supports from China’s National Astronomical Observatories, Beijing Planetarium, and Shanghai Science and Technology Museum.-- Signed cooperation agreements with Lighting Research Center, English Education Group and law Firm; formed the team force.2. Put forward a proposal to national top institutionThe SSPC submitted the first proposal about dark sky protection to the Chinese People’s Political Consultative Conference.3. Introduced the Criteria and Guideline of dark sky protectionThe SSPC team translated 8 documents of IDA, and provided a reference basis for Chinese dark sky protection.4. Actively establish dark sky places-- Plan a Dark Sky Reserve around Ali astronomical observatory (5,100m elevation) in Tibet. China’s Xinhua News Agency released the news.-- Combining with Hangcuo Lake, a National Natural Reserve and Scenic in Tibet, to plan and establish the Dark Sky Park.-- Cooperated with Shandong Longgang Tourism Group to construct the Dream Sky Theme Park in the suburbs of Jinan city.In the IYL 2015, the SSPC is getting further development:First, make dark sky protection enter National Ecological Strategy of “Beautiful China”. We call on: “Beautiful China” needs “Beautiful Night Sky” China should care the shared starry sky, and left this resource and heritage for children.Second, hold “Cosmic Light” exhibition in Shanghai Science and Technology Museum on August.Third, continue to establish Dark Sky Reserve, Park and Theme Park. We want to make these places become the bases of dark sky protection, astronomical education and ecological tourism, and develop into new cultural industry.Fourth, actively join international cooperation.Now, “Blue Sky, White Cloud and Starry Sky “have become

Tropospheric haze and colors of the clear daytime sky.

PubMed

Lee, Raymond L

2015-02-01

To casual observers, haze's visible effects on clear daytime skies may seem mundane: significant scattering by tropospheric aerosols visibly (1) reduces the luminance contrast of distant objects and (2) desaturates sky blueness. However, few published measurements of hazy-sky spectra and chromaticities exist to compare with these naked-eye observations. Hyperspectral imaging along sky meridians of clear and hazy skies at one inland and two coastal sites shows that they have characteristic colorimetric signatures of scattering and absorption by haze aerosols. In addition, a simple spectral transfer function and a second-order scattering model of skylight reveal the net spectral and colorimetric effects of haze.

Aquarius L-Band Radiometers Calibration Using Cold Sky Observations

NASA Technical Reports Server (NTRS)

Dinnat, Emmanuel P.; Le Vine, David M.; Piepmeier, Jeffrey R.; Brown, Shannon T.; Hong, Liang

2015-01-01

An important element in the calibration plan for the Aquarius radiometers is to look at the cold sky. This involves rotating the satellite 180 degrees from its nominal Earth viewing configuration to point the main beams at the celestial sky. At L-band, the cold sky provides a stable, well-characterized scene to be used as a calibration reference. This paper describes the cold sky calibration for Aquarius and how it is used as part of the absolute calibration. Cold sky observations helped establish the radiometer bias, by correcting for an error in the spillover lobe of the antenna pattern, and monitor the long-term radiometer drift.

Karyotype and gene order evolution from reconstructed extinct ancestors highlight contrasts in genome plasticity of modern rosid crops.

PubMed

Murat, Florent; Zhang, Rongzhi; Guizard, Sébastien; Gavranović, Haris; Flores, Raphael; Steinbach, Delphine; Quesneville, Hadi; Tannier, Eric; Salse, Jérôme

2015-01-29

We used nine complete genome sequences, from grape, poplar, Arabidopsis, soybean, lotus, apple, strawberry, cacao, and papaya, to investigate the paleohistory of rosid crops. We characterized an ancestral rosid karyotype, structured into 7/21 protochomosomes, with a minimal set of 6,250 ordered protogenes and a minimum physical coding gene space of 50 megabases. We also proposed ancestral karyotypes for the Caricaceae, Brassicaceae, Malvaceae, Fabaceae, Rosaceae, Salicaceae, and Vitaceae families with 9, 8, 10, 6, 12, 9, 12, and 19 protochromosomes, respectively. On the basis of these ancestral karyotypes and present-day species comparisons, we proposed a two-step evolutionary scenario based on allohexaploidization involving the newly characterized A, B, and C diploid progenitors leading to dominant (stable) and sensitive (plastic) genomic compartments in any modern rosid crops. Finally, a new user-friendly online tool, "DicotSyntenyViewer" (available from http://urgi.versailles.inra.fr/synteny-dicot), has been made available for accurate translational genomics in rosids. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Karyotype evolution and phylogenetic relationships of hamsters (Cricetidae, Muroidea, Rodentia) inferred from chromosomal painting and banding comparison.

PubMed

Romanenko, Svetlana A; Volobouev, Vitaly T; Perelman, Polina L; Lebedev, Vladimir S; Serdukova, Natalya A; Trifonov, Vladimir A; Biltueva, Larisa S; Nie, Wenhui; O'Brien, Patricia C M; Bulatova, Nina Sh; Ferguson-Smith, Malcolm A; Yang, Fengtang; Graphodatsky, Alexander S

2007-01-01

The evolutionary success of rodents of the superfamily Muroidea makes this taxon the most interesting for evolution studies, including study at the chromosomal level. Chromosome-specific painting probes from the Chinese hamster and the Syrian (golden) hamster were used to delimit homologous chromosomal segments among 15 hamster species from eight genera: Allocricetulus, Calomyscus, Cricetulus, Cricetus, Mesocricetus, Peromyscus, Phodopus and Tscherskia (Cricetidae, Muroidea, Rodentia). Based on results of chromosome painting and G-banding, comparative maps between 20 rodent species have been established. The integrated maps demonstrate a high level of karyotype conservation among species in the Cricetus group (Cricetus, Cricetulus, Allocricetulus) with Tscherskia as its sister group. Species within the genera Mesocricetus and Phodopus also show a high degree of chromosomal conservation. Our results substantiate many of the conclusions suggested by other data and strengthen the topology of the Muroidea phylogenetic tree through the inclusion of genome-wide chromosome rearrangements. The derivation of the muroids karyotypes from the putative ancestral state involved centric fusions, fissions, addition of heterochromatic arms and a great number of inversions. Our results provide further insights into the karyotype relationships of all species investigated.

[A case of partial 1p36.1 deletion and partial trisomy 6p diagnosed by karyotype].

PubMed

Fernández Pineda, Monica; Ramírez-Cheyne, Julián; Isaza, Carolina; Saldarriaga, Wilmar

The deletion of chromosomal region 1p36 is one of the most common sub-telomeric microdeletion syndromes and has distinctive dysmorphic features. On the other hand, partial trisomy of the short arm of chromosome 6 is a rare chromosomal abnormality with a variable phenotype. To report a case with both chromosome abnormalities, and to highlight the importance of the karyotype as a diagnostic tool in dysmorphology. The case of is presented of a two month-old infant with several craniofacial anomalies, neck haemangioma, sacral pit, rhizomelic shortening, small hands and feet, left unilateral cryptorchidism, and hypotonia. The infant also suffered intrauterine growth restriction and is the product of the eighth pregnancy of a 28 years old woman. Due to the unspecific findings in phenotype, a karyotype was requested, which showed a partial deletion of 1p36.1 and a partial trisomy of chromosome 6. The development of new techniques in molecular biology has improved diagnostic possibilities in medical genetics. However, the traditional karyotype remains as an important diagnostic tool in patients with multiple congenital anomalies. Copyright © 2016 Sociedad Chilena de Pediatría. Publicado por Elsevier España, S.L.U. All rights reserved.

Polarization patterns of the twilight sky

NASA Astrophysics Data System (ADS)

Cronin, Thomas W.; Warrant, Eric J.; Greiner, Birgit

2005-08-01

Although natural light sources produce depolarized light, patterns of partially linearly polarized light appear in the sky due to scattering from air molecules, dust, and aerosols. Many animals, including bees and ants, orient themselves to patterns of polarization that are present in daytime skies, when the intensity is high and skylight polarization is strong and predictable. The halicitid bee Megalopta genalis inhabits rainforests in Central America. Unlike typical bees, it forages before sunrise and after sunset, when light intensities under the forest canopy are very low, and must find its way to food sources and return to its nest in visually challenging circumstances. An important cue for the orientation could be patterns of polarization in the twilight sky. Therefore, we used a calibrated digital camera to image skylight polarization in an overhead patch of sky, 87.6° across, before dawn on Barro Colorado Island in Panama, where the bees are found. We simultaneously measured the spectral properties of polarized light in a cloudless patch of sky 15° across centered on the zenith. We also performed full-sky imaging of polarization before dawn and after dusk on Lizard Island in Australia, another tropical island. During twilight, celestial polarized light occurs in a wide band stretching perpendicular to the location of the hidden sun and reaching typical degrees of polarization near 80% at wavelengths >600 nm. This pattern appears about 45 minutes before local sunrise or disappears 45 minutes after local sunset (about 20 minutes after the onset of astronomical twilight at dawn, or before its end at dusk) and extends with little change through the entire twilight period. Such a strong and reliable orientation cue could be used for flight orientation by any animal with polarization sensitivity that navigates during twilight.

COSMO-SkyMed and GIS applications

NASA Astrophysics Data System (ADS)

Milillo, Pietro; Sole, Aurelia; Serio, Carmine

2013-04-01

Geographic Information Systems (GIS) and Remote Sensing have become key technology tools for the collection, storage and analysis of spatially referenced data. Industries that utilise these spatial technologies include agriculture, forestry, mining, market research as well as the environmental analysis . Synthetic Aperture Radar (SAR) is a coherent active sensor operating in the microwave band which exploits relative motion between antenna and target in order to obtain a finer spatial resolution in the flight direction exploiting the Doppler effect. SAR have wide applications in Remote Sensing such as cartography, surface deformation detection, forest cover mapping, urban planning, disasters monitoring , surveillance etc… The utilization of satellite remote sensing and GIS technology for this applications has proven to be a powerful and effective tool for environmental monitoring. Remote sensing techniques are often less costly and time-consuming for large geographic areas compared to conventional methods, moreover GIS technology provides a flexible environment for, analyzing and displaying digital data from various sources necessary for classification, change detection and database development. The aim of this work si to illustrate the potential of COSMO-SkyMed data and SAR applications in a GIS environment, in particular a demostration of the operational use of COSMO-SkyMed SAR data and GIS in real cases will be provided for what concern DEM validation, river basin estimation, flood mapping and landslide monitoring.

The global blue-sky albedo change between 2000 - 2015 seen from MODIS

NASA Astrophysics Data System (ADS)

Chrysoulakis, N.; Mitraka, Z.; Gorelick, N.

2016-12-01

The land surface albedo is a critical physical variable, which influences the Earth's climate by affecting the energy budget and distribution in the Earth-atmosphere system. Blue-sky albedo estimates provide a quantitative means for better constraining global and regional scale climate models. The Moderate Resolution Imaging Spectroradiometer (MODIS) albedo product includes parameters for the estimation of both the directional-hemispherical surface reflectance (black-sky albedo) and the bi-hemispherical surface reflectance (white-sky albedo). This dataset was used here for the blue-sky albedo estimation over the globe on an 8-day basis at 0.5 km spatial resolution for the whole time period covered by MODIS acquisitions (i.e. 2000 until today). To estimate the blue-sky albedo, the fraction of the diffused radiation is needed, a function of the Aerosol Optical Thickness (AOT). Required AOT information was acquired from the MODIS AOT product at 1̊ × 1̊ spatial resolution. Since the blue-sky albedo depends on the solar zenith angle (SZA), the 8-day mean blue-sky albedo values were computed as averages of the corresponding values for the representative SZAs covering the 24-hour day. The estimated blue-sky albedo time series was analyzed to capture changes during the 15 period. All computation were performed using the Google Earth Engine (GEE). The GEE provided access to all the MODIS products needed for the analysis without the need of searching or downloading. Moreover, the combination of MODIS products in both temporal and spatial terms was fast and effecting using the GEE API (Application Program Interface). All the products covering the globe and for the time period of 15 years were processed via a single collection. Most importantly, GEE allowed for including the calculation of SZAs covering the 24-hour day which improves the quality of the overall product. The 8-day global products of land surface albedo are available through http://www.rslab.gr/downloads.html

Flying between sky islands: the effect of naturally fragmented habitat on butterfly population structure.

PubMed

Sekar, Sandhya; Karanth, Praveen

2013-01-01

High elevation montane areas are called "sky islands" when they occur as a series of high mountains separated by lowland valleys. Different climatic conditions at high elevations makes sky islands a specialized type of habitat, rendering them naturally fragmented compared to more continuous habitat at lower elevations. Species in sky islands face unsuitable climate in the intervening valleys when moving from one montane area to another. The high elevation shola-grassland mosaic in the Western Ghats of southern India form one such sky island complex. The fragmented patches make this area ideal to study the effect of the spatial orientation of suitable habitat patches on population genetic structure of species found in these areas. Past studies have suggested that sky islands tend to have genetically structured populations, possibly due to reduced gene flow between montane areas. To test this hypothesis, we adopted the comparative approach. Using Amplified Fragment Length Polymorphisms, we compared population genetic structures of two closely related, similar sized butterfly species: Heteropsis oculus, a high elevation shola-grassland specialist restricted to the southern Western Ghats, and Mycalesis patnia, found more continuously distributed in lower elevations. In all analyses, as per expectation the sky island specialist H. oculus exhibited a greater degree of population genetic structure than M. patnia, implying a difference in geneflow. This difference in geneflow in turn appears to be due to the natural fragmentation of the sky island complexes. Detailed analysis of a subset of H. oculus samples from one sky island complex (the Anamalais) showed a surprising genetic break. A possible reason for this break could be unsuitable conditions of higher temperature and lower rainfall in the intervening valley region. Thus, sky island species are not only restricted by lack of habitat continuity between montane areas, but also by the nature of the intervening habitat.

Acute myeloid leukemia in a patient with constitutional 47,XXY karyotype.

PubMed

Jalbut, Marla M; Sohani, Aliyah R; Dal Cin, Paola; Hasserjian, Robert P; Moran, Jenna A; Brunner, Andrew M; Fathi, Amir T

2015-01-01

Klinefelter syndrome (KS), a 47,XXY chromosomal abnormality, has been shown to be associated with a number of malignancies, but has not been linked to acute leukemias to date. We present a case of a 54-year-old male diagnosed with acute myeloid leukemia (AML) with monocytic differentiation, whose cytogenetic and subsequent FISH analyses revealed a constitutional 47,XXY karyotype. We also review and discuss relevant prior literature.

Atmospheric ozone and colors of the Antarctic twilight sky.

PubMed

Lee, Raymond L; Meyer, Wolfgang; Hoeppe, Götz

2011-10-01

Zenith skylight is often distinctly blue during clear civil twilights, and much of this color is due to preferential absorption at longer wavelengths by ozone's Chappuis bands. Because stratospheric ozone is greatly depleted in the austral spring, such decreases could plausibly make Antarctic twilight colors less blue then, including at the zenith. So for several months in 2005, we took digital images of twilight zenith and antisolar skies at Antarctica's Georg von Neumayer Station. Our colorimetric analysis of these images shows only weak correlations between ozone concentration and twilight colors. We also used a spectroradiometer at a midlatitude site to measure zenith twilight spectra and colors. At both locations, spectral extinction by aerosols seems as important as ozone absorption in explaining colors seen throughout the twilight sky.

SKYMONITOR: A Global Network for Sky Brightness Measurements

NASA Astrophysics Data System (ADS)

Davis, Donald R.; Mckenna, D.; Pulvermacher, R.; Everett, M.

2010-01-01

We are implementing a global network to measure sky brightness at dark-sky critical sites with the goal of creating a multi-decade database. The heart of this project is the Night Sky Brightness Monitor (NSBM), an autonomous 2 channel photometer which measures night sky brightness in the visual wavelengths (Mckenna et al, AAS 2009). Sky brightness is measured every minute at two elevation angles typically zenith and 20 degrees to monitor brightness and transparency. The NSBM consists of two parts, a remote unit and a base station with an internet connection. Currently these devices use 2.4 Ghz transceivers with a range of 100 meters. The remote unit is battery powered with daytime recharging using a solar panel. Data received by the base unit is transmitted via email protocol to IDA offices in Tucson where it will be collected, archived and made available to the user community via a web interface. Two other versions of the NSBM are under development: one for radio sensitive areas using an optical fiber link and the second that reads data directly to a laptop for sites without internet access. NSBM units are currently undergoing field testing at two observatories. With support from the National Science Foundation, we will construct and install a total of 10 units at astronomical observatories. With additional funding, we will locate additional units at other sites such as National Parks, dark-sky preserves and other sites where dark sky preservation is crucial. We will present the current comparison with the National Park Service sky monitoring camera. We anticipate that the SKYMONITOR network will be functioning by the end of 2010.

PySM: Python Sky Model

NASA Astrophysics Data System (ADS)

Thorne, Ben; Alonso, David; Naess, Sigurd; Dunkley, Jo

2017-04-01

PySM generates full-sky simulations of Galactic foregrounds in intensity and polarization relevant for CMB experiments. The components simulated are thermal dust, synchrotron, AME, free-free, and CMB at a given Nside, with an option to integrate over a top hat bandpass, to add white instrument noise, and to smooth with a given beam. PySM is based on the large-scale Galactic part of Planck Sky Model code and uses some of its inputs

An Innovative Collaboration on Dark Skies Education

NASA Astrophysics Data System (ADS)

Walker, Constance E.; Mayer, M.; EPO Students, NOAO

2011-01-01

Dark night skies are being lost all over the globe, and hundreds of millions of dollars of energy are being wasted in the process.. Improper lighting is the main cause of light pollution. Light pollution is a concern on many fronts, affecting safety, energy conservation, cost, human health, and wildlife. It also robs us of the beauty of viewing the night sky. In the U.S. alone, over half of the population cannot see the Milky Way from where they live. To help address this, the National Optical Astronomy Observatory Education and Public Outreach (NOAO EPO) staff created two programs: Dark Skies Rangers and GLOBE at Night. Through the two programs, students learn about the importance of dark skies and experience activities that illustrate proper lighting, light pollution's effects on wildlife and how to measure the darkness of their skies. To disseminate the programs locally in an appropriate yet innovative venue, NOAO partnered with the Cooper Center for Environmental Learning in Tucson, Arizona. Operated by the largest school district in Tucson and the University of Arizona College of Education, the Cooper Center educates thousands of students and educators each year about ecology, science, and the beauty and wonders of the Sonoran Desert. During the first academic year (2009-2010), we achieved our goal of reaching nearly 20 teachers in 40 classrooms of 1000 students. We gave two 3-hour teacher-training sessions and provided nineteen 2.5-hour on-site evening sessions on dark skies activities for the students of the teachers trained. One outcome of the program was the contribution of 1000 "GLOBE at Night 2010” night-sky brightness measurements by Tucson students. Training sessions at similar levels are continuing this year. The partnership, planning, lesson learned, and outcomes of NOAO's collaboration with the environmental center will be presented.

The Role of Clear Sky Identification in the Study of Cloud Radiative Effects: Combine Analysis from ISCCP and the Scanner of Radiation Budget (ScaRaB)

NASA Technical Reports Server (NTRS)

Rossow, W. B.; Stubenrauch, C. J.; Briand, V.; Hansen, James E. (Technical Monitor)

2001-01-01

obtained from the ScaRaB adapted ISCCP clear sky identifications. The latter are close to (about 1 W/sq m higher) fluxes corresponding to clear sky regions from original ISCCP data, whereas ScaRaB clear sky LW fluxes obtained with the original ISCCP identification lie about 1 to 2 W/sq m below. Especially in the tropics where water vapor abundance is high, the ERBE clear sky LW fluxes seem to be systematically overestimated by about 4 W/sq m, and SW fluxes are lower by about 5 to 10 W/sq m. However, the uncertainty in the analysis of monthly mean zonal cloud radiative effects is also produced by the low frequency of clear sky occurrence, illustrated when averaging over pixels or even over regions of 4deg longitude x 5deg latitude, corresponding to the spatial resolution of General Circulation Models. The systematic bias in the clear sky fluxes is not reflected in the zonal cloud radiative effects, because the clear sky regions selected by the different algorithms can occur in different geographic regions with different cloud properties.

Moon night sky brightness simulation for the Xinglong station

NASA Astrophysics Data System (ADS)

Yao, Song; Zhang, Hao-Tong; Yuan, Hai-Long; Zhao, Yong-Heng; Dong, Yi-Qiao; Bai, Zhong-Rui; Deng, Li-Cai; Lei, Ya-Juan

2013-10-01

Using a sky brightness monitor at the Xinglong station of National Astronomical Observatories, Chinese Academy of Sciences, we collected data from 22 dark clear nights and 90 moon nights. We first measured the sky brightness variation with time for dark nights and found a clear correlation between sky brightness and human activity. Then with a modified sky brightness model of moon nights and data from these nights, we derived the typical value for several important parameters in the model. With these results, we calculated the sky brightness distribution under a given moon condition for the Xinglong station. Furthermore, we simulated the sky brightness distribution of a moon night for a telescope with a 5° field of view (such as LAMOST). These simulations will be helpful for determining the limiting magnitude and exposure time, as well as planning the survey for LAMOST during moon nights.

On-Orbit Sky Background Measurements with the FOS

NASA Technical Reports Server (NTRS)

Lyons, R. W.; Baity, W. A.; Beaver, E. A.; Cohen, R. D.; Junkkarinen, V. T.; Linsky, J. B.; Bohlin, R. C.

1993-01-01

Observations of the sky background obtained with the Faint Object Spectrograph during 1991-1992 are discussed. Sky light can be an important contributor to the observed count rate in several of the instrument configurations especially when large apertures are used. In general, the sky background is consistent with the pre-launch expectations and showed the expected effects of zodiacal light and diffuse galactic light. In addition to these sources, there is, particularly during the daytime, a highly variable airglow component which includes a number of emission lines. The sky background will have an impact on the reduction and possibly the interpretation of some spectra.

Reassessment of genome size in turtle and crocodile based on chromosome measurement by flow karyotyping: close similarity to chicken

PubMed Central

Kasai, Fumio; O'Brien, Patricia C. M.; Ferguson-Smith, Malcolm A.

2012-01-01

The genome size in turtles and crocodiles is thought to be much larger than the 1.2 Gb of the chicken (Gallus gallus domesticus, GGA), according to the animal genome size database. However, GGA macrochromosomes show extensive homology in the karyotypes of the red eared slider (Trachemys scripta elegans, TSC) and the Nile crocodile (Crocodylus niloticus, CNI), and bird and reptile genomes have been highly conserved during evolution. In this study, size and GC content of all chromosomes are measured from the flow karyotypes of GGA, TSC and CNI. Genome sizes estimated from the total chromosome size demonstrate that TSC and CNI are 1.21 Gb and 1.29 Gb, respectively. This refines previous overestimations and reveals similar genome sizes in chicken, turtle and crocodile. Analysis of chromosome GC content in each of these three species shows a higher GC content in smaller chromosomes than in larger chromosomes. This contrasts with mammals and squamates in which GC content does not correlate with chromosome size. These data suggest that a common ancestor of birds, turtles and crocodiles had a small genome size and a chromosomal size-dependent GC bias, distinct from the squamate lineage. PMID:22491763

Array-based DNA methylation analysis in individuals with developmental delay/intellectual disability and normal molecular karyotype.

PubMed

Kolarova, Julia; Tangen, Imke; Bens, Susanne; Gillessen-Kaesbach, Gabriele; Gutwein, Jana; Kautza, Monika; Rydzanicz, Malgorzata; Stephani, Ulrich; Siebert, Reiner; Ammerpohl, Ole; Caliebe, Almuth

2015-08-01

Despite recent progress in molecular karyotyping and clinical sequencing the cause of intellectual disability in a considerable subset of individuals affected by this phenotype remains elusive. As intellectual disability is also a feature of various imprinting disorders and some monogenic forms of intellectual disability are caused by epigenetic modifiers we hypothesized that changes in DNA methylation might be associated with or even causative in some cases of intellectual disability. Therefore, we performed a DNA methylation analysis of peripheral blood samples from 82 patients with intellectual disability and additional features using the HumanMethylation450 BeadChip. The findings were compared to that of 19 normal controls. Differentially methylated loci were validated by bisulfite pyrosequencing. On a global level, we failed to detect a robust DNA methylation signature segregating individuals with intellectual disability from controls. Using an individual approach, we identified 157 regions showing individual DNA methylation changes in at least one patient. These correlated to 107 genes including genes linked to conditions associated with intellectual disability, namely COLEC11, SHANK2, GLI2 and KCNQ2, as well as imprinted genes like FAM50B and MEG3. The latter was suggestive of an undiagnosed Temple syndrome which could be confirmed by diagnostic tests. Subsequent in-depth analysis of imprinted loci revealed DNA methylation changes at additional imprinted loci, i.e. PPIEL, IGF2R, MEG8 and MCTS2/HM13, in up to five patients. Our findings indicate that imprinting disorders are rare but probably under-diagnosed in patients with intellectual disability and moreover point to DNA methylation changes as potential alternative means to identify deregulated genes involved in the pathogenesis of intellectual disability. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Clear-sky narrowband albedos derived from VIRS and MODIS

NASA Astrophysics Data System (ADS)

Sun-Mack, Sunny; Minnis, Patrick; Chen, Yan; Arduini, Robert F.

2004-02-01

The Clouds and Earth"s Radiant Energy System (CERES) project is using multispectral imagers, the Visible Infrared Scanner (VIRS) on the tropical Rainfall Measuring Mission (TRMM) satellite and the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra, operating since spring 2000, and Aqua, operating since summer 2002, to provide cloud and clear-sky properties at various wavelengths. This paper presents the preliminary results of an analysis of the CERES clear-sky reflectances to derive a set top-of-atmosphere clear sky albedo for 0.65, 0.86, 1.6, 2.13 μm, for all major surface types using the combined MODIS and VIRS datasets. The variability of snow albedo with surface type is examined using MODIS data. Snow albedo was found to depend on the vertical structure of the vegetation. At visible wavelengths, it is least for forested areas and greatest for smooth desert and tundra surfaces. At 1.6 and 2.1-μm, the snow albedos are relatively insensitive to the underlying surface because snow decreases the reflectance. Additional analyses using all of the MODIS results will provide albedo models that should be valuable for many remote sensing, simulation and radiation budget studies.

Measurement of CIB power spectra over large sky areas from Planck HFI maps

NASA Astrophysics Data System (ADS)

Mak, Daisy Suet Ying; Challinor, Anthony; Efstathiou, George; Lagache, Guilaine

2017-04-01

We present new measurements of the power spectra of the cosmic infrared background (CIB) anisotropies using the Planck 2015 full-mission High frequency instrument data at 353, 545 and 857 GHz over 20 000 deg2. We use techniques similar to those applied for the cosmological analysis of Planck, subtracting dust emission at the power spectrum level. Our analysis gives stable solutions for the CIB power spectra with increasing sky coverage up to about 50 per cent of the sky. These spectra agree well with H I-cleaned spectra from Planck measured on much smaller areas of sky with low Galactic dust emission. At 545 and 857 GHz, our CIB spectra agree well with those measured from Herschel data. We find that the CIB spectra at ℓ ≳ 500 are well fitted by a power-law model for the clustered CIB, with a shallow index γcib = 0.53 ± 0.02. This is consistent with the CIB results at 217 GHz from the cosmological parameter analysis of Planck. We show that a linear combination of the 545 and 857 GHz Planck maps is dominated by the CIB fluctuations at multipoles ℓ ≳ 300.

The Two Micron All Sky Survey

NASA Technical Reports Server (NTRS)

Kleinmann, S. G.; Lysaght, M. G.; Pughe, W. L.; Schneider, S. E.; Skrutskie, M. F.; Weinberg, M. D.; Price, S. D.; Matthews, K.; Soifer, B. T.; Huchra, J. P.

1994-01-01

The Two Micron All Sky Survey (2MASS) will provide a uniform survey of the entire sky at three near-infrared wavebands: J(lambda(sub eff) = 1.25 micrometers), H(lambda(sub eff) = 1.65 micrometers), and K(sub s)(lambda(sub eff) = 2.16 micrometers). A major goal of the survey is to probe large scale structures in the Milky Way and in the Local Universe, exploiting the relatively high transparency of the interstellar medium in the near-infrared, and the high near-infrared luminosities of evolved low- and intermediate-mass stars. A sensitive overview of the near-infrared sky is also an essential next step to maximize the gains achievable with infrared array technology. Our assessment of the astrophysical questions that might be addressed with these new arrays is currently limited by the very bright flux limit of the only preceding large scale near-infrared sky survey, the Two Micron Sky Survey carried out at Caltech in the late 1960's. Near-infrared instruments based on the new array technology have already obtained spectra of objects 1 million times fainter than the limit of the TMSS! This paper summarizes the essential parameters of the 2MASS project and the rationale behind those choices, and gives an overview of results obtained with a prototype camera that has been in operation since May 1992. We conclude with a list of expected data products and a statement of the data release policy.

46,XY/47,XYY/48,XYYY karyotype in a 3-year-old boy ascertained because of radioulnar synostosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

James, C.; Robson, L.; Jackson, J.

Chromosome analysis was performed on a 3-year-old boy because of bilateral radioulnar synostosis and demonstrated a mosaic karyotype 46,XY/47,XYY/48,XYYY. He had minor facial anomalies and mild intellectual delay. He appears to be the youngest patient reported with this rare chromosome complement. His father, mother, and brother had normal chromosomes. Fluorescence in situ hybridization (FISH) was performed on the propositus and his father with the Y chromosome heterochromatic probe (pHY3.4) to add to the evaluation of mosaicism. 17 refs., 3 figs., 2 tabs.

How the clear-sky angle of polarization pattern continues underneath clouds: full-sky measurements and implications for animal orientation.

PubMed

Pomozi, I; Horváth, G; Wehner, R

2001-09-01

One of the biologically most important parameters of the cloudy sky is the proportion P of the celestial polarization pattern available for use in animal navigation. We evaluated this parameter by measuring the polarization patterns of clear and cloudy skies using 180 degrees (full-sky) imaging polarimetry in the red (650 nm), green (550 nm) and blue (450 nm) ranges of the spectrum under clear and partly cloudy conditions. The resulting data were compared with the corresponding celestial polarization patterns calculated using the single-scattering Rayleigh model. We show convincingly that the pattern of the angle of polarization (e-vectors) in a clear sky continues underneath clouds if regions of the clouds and parts of the airspace between the clouds and the earth surface (being shady at the position of the observer) are directly lit by the sun. The scattering and polarization of direct sunlight on the cloud particles and in the air columns underneath the clouds result in the same e-vector pattern as that present in clear sky. This phenomenon can be exploited for animal navigation if the degree of polarization is higher than the perceptual threshold of the visual system, because the angle rather than the degree of polarization is the most important optical cue used in the polarization compass. Hence, the clouds reduce the extent of sky polarization pattern that is useful for animal orientation much less than has hitherto been assumed. We further demonstrate quantitatively that the shorter the wavelength, the greater the proportion of celestial polarization that can be used by animals under cloudy-sky conditions. As has already been suggested by others, this phenomenon may solve the ultraviolet paradox of polarization vision in insects such as hymenopterans and dipterans. The present study extends previous findings by using the technique of 180 degrees imaging polarimetry to measure and analyse celestial polarization patterns.

Overview of the SkyMed/COSMO mission

NASA Astrophysics Data System (ADS)

Caltagirone, Francesco; Spera, Paolo; Vigliotti, R.; Manoni, Gemma

1998-12-01

The impact of natural and man-made disasters on the social and economic progress is going to become more significant, making necessary to consider natural disasters reduction. Therefore civil protection and resource managers need elements to make quicker and better decisions on a day-to-day basis, so giving the start to an emerging world-wide remote sensing market. A deep analysis on the potential users, mainly devoted to Mediterranean basin, highlights that existing and/or planned systems are not able to completely satisfy their requirements. To fulfill this gap, Italy decided to promote the SkyMed/COSMO system, presently financed by the Italian Space Agency. SkyMed/COSMO is a constellation of small satellites for observation, remote sensing and data exploitation for risks management and coastal zone monitoring, conceived to provide products, services and logistics to both institutional and commercial remote sensing users on global scale. Furthermore the system is able to satisfy a broad spectrum of important applications also in the field of the resource management, land use and law enforcement. The SkyMed/COSMO current system architecture foresees a constellation of small satellites in two different orbit planes composed by 4 satellite equipped with X-band SAR and 3 satellites equipped with optical sensors. The system is characterized by good spatial resolution, day and night/all-weather imaging capability and by a very good revisit time. The program, currently in phase B, is carried out by an industrial consortium lead by Alenia Aerospazio.

Chromosome Evolution in the Free-Living Flatworms: First Evidence of Intrachromosomal Rearrangements in Karyotype Evolution of Macrostomum lignano (Platyhelminthes, Macrostomida)

PubMed Central

Zadesenets, Kira S.; Ershov, Nikita I.; Berezikov, Eugene; Rubtsov, Nikolay B.

2017-01-01

The free-living flatworm Macrostomum lignano is a hidden tetraploid. Its genome was formed by a recent whole genome duplication followed by chromosome fusions. Its karyotype (2n = 8) consists of a pair of large chromosomes (MLI1), which contain regions of all other chromosomes, and three pairs of small metacentric chromosomes. Comparison of MLI1 with metacentrics was performed by painting with microdissected DNA probes and fluorescent in situ hybridization of unique DNA fragments. Regions of MLI1 homologous to small metacentrics appeared to be contiguous. Besides the loss of DNA repeat clusters (pericentromeric and telomeric repeats and the 5S rDNA cluster) from MLI1, the difference between small metacentrics MLI2 and MLI4 and regions homologous to them in MLI1 were revealed. Abnormal karyotypes found in the inbred DV1/10 subline were analyzed, and structurally rearranged chromosomes were described with the painting technique, suggesting the mechanism of their origin. The revealed chromosomal rearrangements generate additional diversity, opening the way toward massive loss of duplicated genes from a duplicated genome. Our findings suggest that the karyotype of M. lignano is in the early stage of genome diploidization after whole genome duplication, and further studies on M. lignano and closely related species can address many questions about karyotype evolution in animals. PMID:29084138

Karyotypic diversity and evolutionary trends in the Neotropical catfish genus Hypostomus Lacépède, 1803 (Teleostei, Siluriformes, Loricariidae)

PubMed Central

Alves, Anderson Luis; de Borba, Rafael Splendore; Oliveira, Claudio; Mauro Nirchio; Granado, Angel; Foresti, Fausto

2012-01-01

Abstract The family Loricariidae with 813 nominal species is one of the largest fish families of the world. Hypostominae, its more complex subfamily, was recently divided into five tribes. The tribe Hypostomini is composed of a single genus, Hypostomus Lacépède, 1803, which exhibits the largest karyotypic diversity in the family Loricariidae. With the main objective of contributing to a better understanding of the relationship and the patterns of evolution among the karyotypes of Hypostomus species, cytogenetic studies were conducted in six species of the genus from Brazil and Venezuela. The results show a great chromosome variety with diploid numbers ranging from 2n=68 to 2n=76, with a clear predominance of acrocentric chromosomes. The Ag-NORs are located in terminal position in all species analyzed. Three species have single Ag-NORs (Hypostomus albopunctatus (Regan, 1908), Hypostomus prope plecostomus (Linnaeus, 1758), and Hypostomus prope paulinus (Ihering, 1905)) and three have multiple Ag-NORs (Hypostomus ancistroides (Ihering, 1911), Hypostomus prope iheringi (Regan, 1908), and Hypostomus strigaticeps (Regan, 1908)). In the process of karyotype evolution of the group, the main type of chromosome rearrangements was possibly centric fissions, which may have been facilitated by the putative tetraploid origin of Hypostomus species. The relationship between the karyotype changes and the evolution in the genus is discussed. PMID:24260683

Touch the Cosmos: The 2012 International Earth and Sky Photo Contest

NASA Astrophysics Data System (ADS)

Walker, C. E.; Tafreshi, B.; Simmons, M.

2013-04-01

In April 2012, the National Optical Astronomy Observatory in partnership with The World At Night organized the Third International Earth and Sky Photo Contest on the importance of preserving dark skies for the Dark Skies Awareness theme of Global Astronomy Month. At the Fall 2012 ASP conference, a presentation on the Earth and Sky Photo Contest was made. The intended outcomes of the 10-minute oral talk were 1) to inspire visual learners to be more aware of the disappearing starry night sky due to light pollution, 2) to provide some basic understanding of what the issues are surrounding light pollution, 3) to provide incentive to get people to participate in the photo contest as a way of promoting dark skies awareness and 4) to provide a stepping stone to more active involvement in dark skies preservation. With more than half of the world's population in cities, Earth and Sky photos of dark, starry skies offer the next best thing to being there.

Armenian Names of Sky Constellations

NASA Astrophysics Data System (ADS)

Mickaelian, A. M.; Farmanyan, S. V.; Mikayelyan, A. A.

2016-12-01

The work is devoted to the correction and recovery of the Armenian names of the sky constellations, as they were forgotten or distorted during the Soviet years, mainly due to the translation from Russian. A total of 34 constellation names have been corrected. A brief overview of the history of the division of the sky into constellations and their naming is also given. At the end, the list of all 88 constellations is given with the names in Latin, English, Russian and Armenian.

Fading Skies

ERIC Educational Resources Information Center

Sio, Betsy Menson

2009-01-01

A sky fading from blue to white to red at the horizon, and water darkening from light to midnight blue. Strong diagonals slashing through the image, drawing a viewer's eyes deeper into the picture, and delicate trees poised to convey a sense of beauty. These are the fascinating strengths of the ukiyo-e woodblock prints of Japanese artist Ando…

Dark Skies Awareness Programs for the International Year of Astronomy

NASA Astrophysics Data System (ADS)

Walker, C. E.; Pompea, S. M.

2008-12-01

The loss of a dark night sky as a natural resource is a growing concern. It impacts not only astronomical research, but also our environment in terms of ecology, health, safety, economics and energy conservation. For this reason, "Dark Skies are a Universal Resource" is a cornerstone project for the U.S. International Year of Astronomy (IYA) program in 2009. Its goal is to raise public awareness of the impact of artificial lighting on local environments by getting people involved in a variety of dark skies-related programs. These programs focus on citizen-scientist sky-brightness monitoring programs, a planetarium show, podcasting, social networking, a digital photography contest, the Good Neighbor Lighting Program, Earth Hour, National Dark Skies Week, a traveling exhibit, a video tutorial, Dark Skies Discovery Sites, Astronomy Nights in the (National) Parks, Sidewalk Astronomy, and a Quiet Skies program. Many similar programs are available internationally through the "Dark Skies Awareness" Global Cornerstone Project. Working groups for both the national and international dark skies cornerstone projects are being chaired by the National Optical Astronomy Observatory (NOAO). The presenters from NOAO will provide the "know-how" and the means for session participants to become community advocates in promoting Dark Skies programs as public events at their home institutions. Participants will be able to get information on jump-starting their education programs through the use of well-developed instructional materials and kits. For more information, visit http://astronomy2009.us/darkskies/ and http://www.darkskiesawareness.org/.

Advertising Citizen Science: A Trailer for the Citizen Sky Project

NASA Astrophysics Data System (ADS)

Wyatt, Ryan; Price, A.

2012-01-01

Citizen Sky is a multi-year, NSF funded citizen science project involving the bright and mysterious variable star epsilon Aurigae. The project was conceived by the IYA 2009 working group on Research Experiences for Students, Teachers, and Citizen-Scientists. Citizen Sky goes beyond simple observing to include a major data analysis component, introducing participants to the full scientific process from background research to paper writing for a peer-reviewed journal. As a means of generating interest in the project, the California Academy of Sciences produced a six-minute "trailer” formatted for both traditional and fulldome planetariums as well as HD and web applications. This talk will review the production process for the trailer as well as the methods of distribution via planetariums, social media, and other venues_along with an update on the Citizen Sky Project as a whole. We will show how to use a small, professionally-produced planetarium trailer to help spread word on a citizen science project. We will also show preliminary results on a study about how participation level/type in the project affects science learning.

Using machine learning techniques to automate sky survey catalog generation

NASA Technical Reports Server (NTRS)

Fayyad, Usama M.; Roden, J. C.; Doyle, R. J.; Weir, Nicholas; Djorgovski, S. G.

1993-01-01

We describe the application of machine classification techniques to the development of an automated tool for the reduction of a large scientific data set. The 2nd Palomar Observatory Sky Survey provides comprehensive photographic coverage of the northern celestial hemisphere. The photographic plates are being digitized into images containing on the order of 10(exp 7) galaxies and 10(exp 8) stars. Since the size of this data set precludes manual analysis and classification of objects, our approach is to develop a software system which integrates independently developed techniques for image processing and data classification. Image processing routines are applied to identify and measure features of sky objects. Selected features are used to determine the classification of each object. GID3* and O-BTree, two inductive learning techniques, are used to automatically learn classification decision trees from examples. We describe the techniques used, the details of our specific application, and the initial encouraging results which indicate that our approach is well-suited to the problem. The benefits of the approach are increased data reduction throughput, consistency of classification, and the automated derivation of classification rules that will form an objective, examinable basis for classifying sky objects. Furthermore, astronomers will be freed from the tedium of an intensely visual task to pursue more challenging analysis and interpretation problems given automatically cataloged data.

A Novel Sky-Subtraction Method Based on Non-negative Matrix Factorisation with Sparsity for Multi-object Fibre Spectroscopy

NASA Astrophysics Data System (ADS)

Zhang, Bo; Zhang, Long; Ye, Zhongfu

2016-12-01

A novel sky-subtraction method based on non-negative matrix factorisation with sparsity is proposed in this paper. The proposed non-negative matrix factorisation with sparsity method is redesigned for sky-subtraction considering the characteristics of the skylights. It has two constraint terms, one for sparsity and the other for homogeneity. Different from the standard sky-subtraction techniques, such as the B-spline curve fitting methods and the Principal Components Analysis approaches, sky-subtraction based on non-negative matrix factorisation with sparsity method has higher accuracy and flexibility. The non-negative matrix factorisation with sparsity method has research value for the sky-subtraction on multi-object fibre spectroscopic telescope surveys. To demonstrate the effectiveness and superiority of the proposed algorithm, experiments are performed on Large Sky Area Multi-Object Fiber Spectroscopic Telescope data, as the mechanisms of the multi-object fibre spectroscopic telescopes are similar.

Dark Skies Rangers

NASA Astrophysics Data System (ADS)

Doran, Rosa

2015-08-01

Creating awareness about the importance of the protection of our dark skies is the main goal of the Dark Skies Rangers project, a joint effort from the NOAO and the Galileo Teacher Training Program. Hundreds of schools and thousands of students have been reached by this program. We will focus in particular on the experience being developed in Portugal where several municipalities have now received street light auditing produced by students with suggestions on how to enhance the energy efficiency of illumination of specific urban areas. In the International Year of Light we are investing our efforts in exporting the successful Portuguese experience to other countries. The recipe is simple: train teachers, engage students, foster the participation of local community and involve local authorities in the process. In this symposium we hope to draft the cookbook for the near future.

Dual energy micro CT SkyScan 1173 for the characterization of urinary stone

NASA Astrophysics Data System (ADS)

Fitri, L. A.; Asyana, V.; Ridwan, T.; Anwary, F.; Soekersi, H.; Latief, F. D. E.; Haryanto, F.

2016-03-01

Knowledge of the composition of urinary stones is an essential part to determine suitable treatments for patients. The aim of this research is to characterize the urinary stones by using dual energy micro CT SkyScan 11173. This technique combines high-energy and low- energy scanning during a single acquisition. Six human urinary stones were scanned in vitro using 80 kV and 120 kV micro CT SkyScan 1173. Projected images were produced by micro CT SkyScan 1173 and then reconstructed using NRecon (in-house software from SkyScan) to obtain a complete 3D image. The urinary stone images were analysed using CT analyser to obtain information of internal structure and Hounsfield Unit (HU) values to determine the information regarding the composition of the urinary stones, respectively. HU values obtained from some regions of interest in the same slice are compared to a reference HU. The analysis shows information of the composition of the six scanned stones obtained. The six stones consist of stone number 1 (calcium+cystine), number 2 (calcium+struvite), number 3 (calcium+cystine+struvite), number 4 (calcium), number 5 (calcium+cystine+struvite), and number 6 (calcium+uric acid). This shows that dual energy micro CT SkyScan 1173 was able to characterize the composition of the urinary stone.

The SPHEREx All-Sky Spectral Survey

NASA Astrophysics Data System (ADS)

Bock, James; SPHEREx Science Team

2018-01-01

SPHEREx, a mission in NASA's Medium Explorer (MIDEX) program that was selected for Phase A in August 2017, is an all-sky survey satellite designed to address all three science goals in NASA's astrophysics division, with a single instrument, a wide-field spectral imager. SPHEREx will probe the physics of inflation by measuring non-Gaussianity by studying large-scale structure, surveying a large cosmological volume at low redshifts, complementing high-z surveys optimized to constrain dark energy. The origin of water and biogenic molecules will be investigated in all phases of planetary system formation - from molecular clouds to young stellar systems with protoplanetary disks - by measuring ice absorption spectra. We will chart the origin and history of galaxy formation through a deep survey mapping large-scale spatial power in two deep fields located near the ecliptic poles. Following in the tradition of all-sky missions such as IRAS, COBE and WISE, SPHEREx will be the first all-sky near-infrared spectral survey. SPHEREx will create spectra (0.75 – 4.2 um at R = 41; and 4.2 – 5 um at R = 135) with high sensitivity making background-limited observations using a passively-cooled telescope with a wide field-of-view for large mapping speed. During its two-year mission, SPHEREx will produce four complete all-sky maps that will serve as a rich archive for the astronomy community. With over a billion detected galaxies, hundreds of millions of high-quality stellar and galactic spectra, and over a million ice absorption spectra, the archive will enable diverse scientific investigations including studies of young stellar systems, brown dwarfs, high-redshift quasars, galaxy clusters, the interstellar medium, asteroids and comets. All aspects of the instrument and spacecraft have high heritage. SPHEREx requires no new technologies and carries large technical and resource margins on every aspect of the design. SPHEREx is a partnership between Caltech and JPL, following the

The Karyotype of Microsternarchus aff. bilineatus: A First Case of Y Chromosome Degeneration in Gymnotiformes.

PubMed

Batista, Jéssica Almeida; Cardoso, Adauto Lima; Milhomem-Paixão, Susana Suely Rodrigues; Ready, Jonathan Stuart; Pieczarka, Julio Cesar; Nagamachi, Cleusa Yoshiko

2017-06-01

Various species and lineages that until recently were identified as Microsternarchus bilineatus (Hypopomidae, Gymnotiformes) have a widespread distribution in the Amazon and Orinoco River basins and across the Guiana shield. Recent molecular studies show five distinct lineages for Microsternarchus from different localities. These results suggest that this previously monotypic genus actually consists of more than one species. Here, we describe the karyotype of M. aff. bilineatus from the Cururutuia River (Bragança, Pará, Brazil). The diploid number of 48 chromosomes (14 meta-submetacentric/34 subtelo-acrocentric) is found for males and females, with an XX/XY sex chromosome system. The nucleolar organizer region is found in the short arm of pair 9. Constitutive heterochromatin occurs in the pericentromeric region of all chromosomes, in the distal region of 3p, 5p, 7p, 8q, 9q, 16q, and Xq, in the interstitial region in 2p, 10q, 11q, and 12q and all along 4p, and in a large block of the Y chromosome. These results indicate extensive karyotype divergence between this population and samples from Igarapé Tarumã Grande (Negro River, Amazonas, Brazil) studied by other researchers. Moreover, despite the diversity of sex chromosome systems found in Gymnotiformes, the XX/XY sex chromosome system of M. aff. bilineatus is the first case of Y chromosome degeneration in this order. The present data are valuable to help understand karyotype evolution in Hypopomidae.

Daytime Sky Brightness Characterization for Persistent GEO SSA

NASA Astrophysics Data System (ADS)

Thomas, G.; Cobb, R. G.

Space Situational Awareness (SSA) is fundamental to operating in space. SSA for collision avoidance ensures safety of flight for both government and commercial spacecraft through persistent monitoring. A worldwide network of optical and radar sensors gather satellite ephemeris data from the nighttime sky. Current practice for daytime satellite tracking is limited exclusively to radar as the brightening daytime sky prevents the use of visible-band optical sensors. Radar coverage is not pervasive and results in significant daytime coverage gaps in SSA. To mitigate these gaps, optical telescopes equipped with sensors in the near-infrared band (0.75-0.9m) may be used. The diminished intensity of the background sky radiance in the near-infrared band may allow for daylight tracking further into the twilight hours. To determine the performance of a near-infrared sensor for daylight custody, the sky background radiance must first be characterized spectrally as a function of wavelength. Using a physics-based atmospheric model with access to near-real time weather, we developed a generalized model for the apparent sky brightness of the Geostationary satellite belt. The model results are then compared to measured data collected from Dayton, OH through various look and Sun angles for model validation and spectral sky radiance quantification in the visible and near-infrared bands.

Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla.

PubMed

Trifonov, Vladimir A; Stanyon, Roscoe; Nesterenko, Anastasia I; Fu, Beiyuan; Perelman, Polina L; O'Brien, Patricia C M; Stone, Gary; Rubtsova, Nadezhda V; Houck, Marlys L; Robinson, Terence J; Ferguson-Smith, Malcolm A; Dobigny, Gauthier; Graphodatsky, Alexander S; Yang, Fengtang

2008-01-01

The order Perissodactyla, the group of odd-toed ungulates, includes three extant families: Equidae, Tapiridae, and Rhinocerotidae. The extremely rapid karyotypic diversification in perissodactyls has so far prevented the establishment of genome-wide homology maps between these three families by traditional cytogenetic approaches. Here we report the first genome-wide comparative chromosome maps of African rhinoceroses, four tapir species, four equine species, and humans. These maps were established by multidirectional chromosome painting, with paint probes derived from flow-sorted chromosomes of Equus grevyi, Tapirus indicus, and Ceratotherium simum as well as painting probes from horse and human. The Malayan tapir (Tapirus indicus), Baird's tapir (T. bairdii), mountain tapir (T. pinchaque), lowland tapir (T. terrestris), and onager (E. hemionus onager), were studied by cross-species chromosome painting for the first time. Our results, when integrated with previously published comparative chromosome maps of the other perissodactyl species, have enabled the reconstruction of perissodactyl, ceratomorph, and equid ancestral karyotypes, and the identification of the defining evolutionary chromosomal rearrangements along each lineage. Our results allow a more reliable estimate of the mode and tempo of evolutionary chromosomal rearrangements, revealing a striking switch between the slowly evolving ceratomorphs and extremely rapidly evolving equids.

Getting Students to Observe the Night Sky, Even When Your Sky is Cloudy Half the Time

NASA Astrophysics Data System (ADS)

Shipman, Harry L.

2010-01-01

Teachers of introductory astronomy classes often wish to get our students to look at the night sky However, most educational institutions in America are located in regions where cloudy nights are relatively common. This paper describes a low cost way to integrate observations into a course which lacks a dedicated astronomy lab. Students in two large. general science classes in fall 2008 and spring 2009 were asked to participate in one of two global star-counting projects. The fall project was coordinated by UCAR and asked for observations of the constellation Cygnus (http://www.windows.ucar.edu/citizen_science/starcount/results.html). The spring project was run by Project Globe and asked for observations of the constellation Orion. (http://www.globe.gov/GaN/ ). In both cases, students simply find the constellation, match the star pattern to charts that go to different limiting magnitudes, and report the data to the coordinating organization. A copy of the report is sent to the course instructor. The instructor can ask for additional information. Did it work? The success of this project was evaluated by analyzing the e-mail messages that students returned in response to the assignment. In both courses, a very large majority of the students actually did the exercise and submitted a report. Students reported that observing the sky in this way was satisfying to them., and sometimes the reports were quite enthusiastic. In spring 2009, some preparatory activies were conducted during class that were designed to sensitize students to the beauty of the sky. Analysis of student reports indicated that these preparatory activities were helpful, but not as helpful as the instructor would like. This research is part of the Teacher Professional Continuum project at the University of Delaware, which is supported by the National Science Foundation.

Sky type discrimination using a ground-based sun photometer

USGS Publications Warehouse

DeFelice, Thomas P.; Wylie, Bruce K.

2001-01-01

A 2-year feasibility study was conducted at the USGS EROS Data Center, South Dakota (43.733°N, 96.6167°W) to assess whether a four-band, ground-based, sun photometer could be used to discriminate sky types. The results indicate that unique spectral signatures do exist between sunny skies (including clear and hazy skies) and cirrus, and cirrostratus, altocumulus or fair-weather cumulus, and thin stratocumulus or altostratus, and fog/fractostratus skies. There were insufficient data points to represent other cloud types at a statistically significant level.

SkyNet: A Modular Nuclear Reaction Network Library

NASA Astrophysics Data System (ADS)

Lippuner, Jonas; Roberts, Luke F.

2017-12-01

Almost all of the elements heavier than hydrogen that are present in our solar system were produced by nuclear burning processes either in the early universe or at some point in the life cycle of stars. In all of these environments, there are dozens to thousands of nuclear species that interact with each other to produce successively heavier elements. In this paper, we present SkyNet, a new general-purpose nuclear reaction network that evolves the abundances of nuclear species under the influence of nuclear reactions. SkyNet can be used to compute the nucleosynthesis evolution in all astrophysical scenarios where nucleosynthesis occurs. SkyNet is free and open source, and aims to be easy to use and flexible. Any list of isotopes can be evolved, and SkyNet supports different types of nuclear reactions. SkyNet is modular so that new or existing physics, like nuclear reactions or equations of state, can easily be added or modified. Here, we present in detail the physics implemented in SkyNet with a focus on a self-consistent transition to and from nuclear statistical equilibrium to non-equilibrium nuclear burning, our implementation of electron screening, and coupling of the network to an equation of state. We also present comprehensive code tests and comparisons with existing nuclear reaction networks. We find that SkyNet agrees with published results and other codes to an accuracy of a few percent. Discrepancies, where they exist, can be traced to differences in the physics implementations.

Evidence of separate karyotype evolutionary pathway in Euglossa orchid bees by cytogenetic analyses.

PubMed

Fernandes, Anderson; Werneck, Hugo A; Pompolo, Silvia G; Lopes, Denilce M

2013-09-01

Euglossini are solitary bees considered important pollinators of many orchid species. Information regarding chromosome organization is available for only a small number of species in this group. In the present work, the species Euglossa townsendi and E. carolina were analyzed by cytogenetic techniques to collect information that may aid the understanding of their evolution and chromosomal organization. The chromosome number found was n = 21 for males and 2n = 42 for females in the two species. The distribution and amount of heterochromatin regions differed in the two species analyzed, where they were classified as “high” or “low” heterochromatin content, similarly to what has already been performed in social bee species of the genus Melipona. Banding patterns found in this study suggest that other mechanisms may have occurred in the karyotype evolution of this group, unlike those suggested for social bees and ants. Karyotype evolution of solitary bees appears to have occurred as an event separate from other hymenopterans and did not involve chromosome fissions and heterochromatin amplification.

An efficient method for removing point sources from full-sky radio interferometric maps

NASA Astrophysics Data System (ADS)

Berger, Philippe; Oppermann, Niels; Pen, Ue-Li; Shaw, J. Richard

2017-12-01

A new generation of wide-field radio interferometers designed for 21-cm surveys is being built as drift scan instruments allowing them to observe large fractions of the sky. With large numbers of antennas and frequency channels, the enormous instantaneous data rates of these telescopes require novel, efficient, data management and analysis techniques. The m-mode formalism exploits the periodicity of such data with the sidereal day, combined with the assumption of statistical isotropy of the sky, to achieve large computational savings and render optimal analysis methods computationally tractable. We present an extension to that work that allows us to adopt a more realistic sky model and treat objects such as bright point sources. We develop a linear procedure for deconvolving maps, using a Wiener filter reconstruction technique, which simultaneously allows filtering of these unwanted components. We construct an algorithm, based on the Sherman-Morrison-Woodbury formula, to efficiently invert the data covariance matrix, as required for any optimal signal-to-noise ratio weighting. The performance of our algorithm is demonstrated using simulations of a cylindrical transit telescope.

The Sky This Week, 2016 April 19 - 26 - Naval Oceanography Portal

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The Sky This Week, 2015 December 8 - 15 - Naval Oceanography Portal

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are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2015 December 8 - 15 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky This Week, 2015 December 8 - 15 Info The Sky This Week, 2015 December 8 - 15 The year's best meteor

Optical infrared sky survey

NASA Technical Reports Server (NTRS)

Craine, E. R.

1978-01-01

A description is presented of a photographic survey of the northern sky currently underway at Steward Observatory. The survey is being conducted at a principal bandpass of 8000-9000 A supplemented by a V bandpass. The survey is the first of its type conducted using a small (20-in. aperture) wide-field telescope, a very large-format (146 mm) image intensifier with a red-extended, multialkali photocathode. The output phosphor of the intensifier is photographed with IIaD emulsion on film. One of the goals of the survey is to catalog red stellar objects on the photographs and to examine in detail regions of the sky which are obscured by hydrogen emission on conventional photographs.

Build YOUR All-Sky View with Aladin

NASA Astrophysics Data System (ADS)

Oberto, A.; Fernique, P.; Boch, T.; Bonnarel, F.

2011-07-01

From the need to extend the display outside the boundaries of a single image, the Aladin team recently developed a new feature to visualize wide areas or even all of the sky. This all-sky view is particularly useful for visualization of very large objects and, with coverage of the whole sky, maps from the Planck satellite. To improve on this capability, some catalogs and maps have been built from many surveys (e.g., DSS, IRIS, GLIMPSE, SDSS, 2MASS) in mixed resolutions, allowing progressive display. The maps are constructed by mosaicing individual images. Now, we provide a new tool to build an all-sky view with your own images. From the images you have selected, it will compose a mosaic with several resolutions (HEALPix tessellation), and organize them to allow their progressive display in Aladin. For convenience, you can export it to a HEALPix map, or share it with the community through Aladin from your web site or eventually from the CDS image collection.

Three gangliogliomas: results of GTG-banding, SKY, genome-wide high resolution SNP-array, gene expression and review of the literature.

PubMed

Xu, Li-Xin; Holland, Heidrun; Kirsten, Holger; Ahnert, Peter; Krupp, Wolfgang; Bauer, Manfred; Schober, Ralf; Mueller, Wolf; Fritzsch, Dominik; Meixensberger, Jürgen; Koschny, Ronald

2015-04-01

According to the World Health Organization gangliogliomas are classified as well-differentiated and slowly growing neuroepithelial tumors, composed of neoplastic mature ganglion and glial cells. It is the most frequent tumor entity observed in patients with long-term epilepsy. Comprehensive cytogenetic and molecular cytogenetic data including high-resolution genomic profiling (single nucleotide polymorphism (SNP)-array) of gangliogliomas are scarce but necessary for a better oncological understanding of this tumor entity. For a detailed characterization at the single cell and cell population levels, we analyzed genomic alterations of three gangliogliomas using trypsin-Giemsa banding (GTG-banding) and by spectral karyotyping (SKY) in combination with SNP-array and gene expression array experiments. By GTG and SKY, we could confirm frequently detected chromosomal aberrations (losses within chromosomes 10, 13 and 22; gains within chromosomes 5, 7, 8 and 12), and identify so far unknown genetic aberrations like the unbalanced non-reciprocal translocation t(1;18)(q21;q21). Interestingly, we report on the second so far detected ganglioglioma with ring chromosome 1. Analyses of SNP-array data from two of the tumors and respective germline DNA (peripheral blood) identified few small gains and losses and a number of copy-neutral regions with loss of heterozygosity (LOH) in germline and in tumor tissue. In comparison to germline DNA, tumor tissues did not show substantial regions with significant loss or gain or with newly developed LOH. Gene expression analyses of tumor-specific genes revealed similarities in the profile of the analyzed samples regarding different relevant pathways. Taken together, we describe overlapping but also distinct and novel genetic aberrations of three gangliogliomas. © 2014 Japanese Society of Neuropathology.

All-Sky Microwave Imager Data Assimilation at NASA GMAO

NASA Technical Reports Server (NTRS)

Kim, Min-Jeong; Jin, Jianjun; El Akkraoui, Amal; McCarty, Will; Todling, Ricardo; Gu, Wei; Gelaro, Ron

2017-01-01

Efforts in all-sky satellite data assimilation at the Global Modeling and Assimilation Office (GMAO) at NASA Goddard Space Flight Center have been focused on the development of GSI configurations to assimilate all-sky data from microwave imagers such as the GPM Microwave Imager (GMI) and Global Change Observation Mission-Water (GCOM-W) Advanced Microwave Scanning Radiometer 2 (AMSR-2). Electromagnetic characteristics associated with their wavelengths allow microwave imager data to be relatively transparent to atmospheric gases and thin ice clouds, and highly sensitive to precipitation. Therefore, GMAOs all-sky data assimilation efforts are primarily focused on utilizing these data in precipitating regions. The all-sky framework being tested at GMAO employs the GSI in a hybrid 4D-EnVar configuration of the Goddard Earth Observing System (GEOS) data assimilation system, which will be included in the next formal update of GEOS. This article provides an overview of the development of all-sky radiance assimilation in GEOS, including some performance metrics. In addition, various projects underway at GMAO designed to enhance the all-sky implementation will be introduced.

The Sky This Week, 2016 March 15 - 23 - Naval Oceanography Portal

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are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2016 March 15 - 23 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky This Week, 2016 March 15 - 23 Info The Sky This Week, 2016 March 15 - 23 The equinox and the calendar

The Sky This Week, 2016 January 19 - 26 - Naval Oceanography Portal

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are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2016 January 19 - 26 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky This Week, 2016 January 19 - 26 Info The Sky This Week, 2016 January 19 - 26 See all the bright planets

The Sky This Week, 2016 January 5 - 12 - Naval Oceanography Portal

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Citizen Sky, An Update on the AAVSO's New Citizen Science Project

NASA Astrophysics Data System (ADS)

Turner, Rebecca; Price, A.; Henden, A.; Stencel, R.; Kloppenborg, B.

2011-01-01

Citizen Sky is a multi-year, NSF-funded, citizen science project focusing on the bright variable star, epsilon Aurigae. Citizen Sky goes beyond simple observing to include a major data analysis component. The goal is to introduce the participant to the full scientific process from background research to paper writing for a peer-reviewed journal. The first year of the project, 2009-10, was dedicated to developing project infrastructure, educating participants about epsilon Aurigae, and training these participants to observe the star and report their data. Looking forward, years two and three of the project will focus on assembling teams of participants to work on their own analysis and research. Results will be published in a special issue of the peer-reviewed Journal of the AAVSO. This project has been made possible by the National Science Foundation.

PRIMORDIAL GRAVITATIONAL WAVE DETECTABILITY WITH DEEP SMALL-SKY COSMIC MICROWAVE BACKGROUND EXPERIMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farhang, M.; Bond, J. R.; Netterfield, C. B.

2013-07-01

We use the Bayesian estimation on direct T - Q - U cosmic microwave background (CMB) polarization maps to forecast errors on the tensor-to-scalar power ratio r, and hence on primordial gravitational waves, as a function of sky coverage f{sub sky}. This map-based likelihood filters the information in the pixel-pixel space into the optimal combinations needed for r detection for cut skies, providing enhanced information over a first-step linear separation into a combination of E, B, and mixed modes, and ignoring the latter. With current computational power and for typical resolutions appropriate for r detection, the large matrix inversions requiredmore » are accurate and fast. Our simulations explore two classes of experiments, with differing bolometric detector numbers, sensitivities, and observational strategies. One is motivated by a long duration balloon experiment like Spider, with pixel noise {proportional_to}{radical}(f{sub sky}) for a specified observing period. This analysis also applies to ground-based array experiments. We find that, in the absence of systematic effects and foregrounds, an experiment with Spider-like noise concentrating on f{sub sky} {approx} 0.02-0.2 could place a 2{sigma}{sub r} Almost-Equal-To 0.014 boundary ({approx}95% confidence level), which rises to 0.02 with an l-dependent foreground residual left over from an assumed efficient component separation. We contrast this with a Planck-like fixed instrumental noise as f{sub sky} varies, which gives a Galaxy-masked (f{sub sky} = 0.75) 2{sigma}{sub r} Almost-Equal-To 0.015, rising to Almost-Equal-To 0.05 with the foreground residuals. Using as the figure of merit the (marginalized) one-dimensional Shannon entropy of r, taken relative to the first 2003 WMAP CMB-only constraint, gives -2.7 bits from the 2012 WMAP9+ACT+SPT+LSS data, and forecasts of -6 bits from Spider (+ Planck); this compares with up to -11 bits for CMBPol, COrE, and PIXIE post-Planck satellites and -13 bits for a

Chromosome painting in three-toed sloths: a cytogenetic signature and ancestral karyotype for Xenarthra

PubMed Central

2012-01-01

Background Xenarthra (sloths, armadillos and anteaters) represent one of four currently recognized Eutherian mammal supraorders. Some phylogenomic studies point to the possibility of Xenarthra being at the base of the Eutherian tree, together or not with the supraorder Afrotheria. We performed painting with human autosomes and X-chromosome specific probes on metaphases of two three-toed sloths: Bradypus torquatus and B. variegatus. These species represent the fourth of the five extant Xenarthra families to be studied with this approach. Results Eleven human chromosomes were conserved as one block in both B. torquatus and B. variegatus: (HSA 5, 6, 9, 11, 13, 14, 15, 17, 18, 20, 21 and the X chromosome). B. torquatus, three additional human chromosomes were conserved intact (HSA 1, 3 and 4). The remaining human chromosomes were represented by two or three segments on each sloth. Seven associations between human chromosomes were detected in the karyotypes of both B. torquatus and B. variegatus: HSA 3/21, 4/8, 7/10, 7/16, 12/22, 14/15 and 17/19. The ancestral Eutherian association 16/19 was not detected in the Bradypus species. Conclusions Our results together with previous reports enabled us to propose a hypothetical ancestral Xenarthran karyotype with 48 chromosomes that would differ from the proposed ancestral Eutherian karyotype by the presence of the association HSA 7/10 and by the split of HSA 8 into three blocks, instead of the two found in the Eutherian ancestor. These same chromosome features point to the monophyly of Xenarthra, making this the second supraorder of placental mammals to have a chromosome signature supporting its monophyly. PMID:22429690

Night Sky Brightness at San Pedro Martir Observatory

NASA Astrophysics Data System (ADS)

Plauchu-Frayn, I.; Richer, M. G.; Colorado, E.; Herrera, J.; Córdova, A.; Ceseña, U.; Ávila, F.

2017-03-01

We present optical UBVRI zenith night sky brightness measurements collected on 18 nights during 2013 to 2016 and SQM measurements obtained daily over 20 months during 2014 to 2016 at the Observatorio Astronómico Nacional on the Sierra San Pedro Mártir (OAN-SPM) in México. The UBVRI data is based upon CCD images obtained with the 0.84 m and 2.12 m telescopes, while the SQM data is obtained with a high-sensitivity, low-cost photometer. The typical moonless night sky brightness at zenith averaged over the whole period is U = 22.68, B = 23.10, V = 21.84, R = 21.04, I = 19.36, and SQM = 21.88 {mag} {{arcsec}}-2, once corrected for zodiacal light. We find no seasonal variation of the night sky brightness measured with the SQM. The typical night sky brightness values found at OAN-SPM are similar to those reported for other astronomical dark sites at a similar phase of the solar cycle. We find a trend of decreasing night sky brightness with decreasing solar activity during period of the observations. This trend implies that the sky has become darker by Δ U = 0.7, Δ B = 0.5, Δ V = 0.3, Δ R=0.5 mag arcsec-2 since early 2014 due to the present solar cycle.

Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution.

PubMed

Rens, Willem; Grützner, Frank; O'brien, Patricia C M; Fairclough, Helen; Graves, Jennifer A M; Ferguson-Smith, Malcolm A

2004-11-16

The platypus (2n = 52) has a complex karyotype that has been controversial over the last three decades. The presence of unpaired chromosomes and an unknown sex-determining system especially has defied attempts at conventional analysis. This article reports on the preparation of chromosome-specific probes from flow-sorted chromosomes and their application in the identification and classification of all platypus chromosomes. This work reveals that the male karyotype has 21 pairs of chromosomes and 10 unpaired chromosomes (E1-E10), which are linked by short regions of homology to form a multivalent chain in meiosis. The female karyotype differs in that five of these unpaired elements (E1, E3, E5, E7, and E9) are each present in duplicate, whereas the remaining five unpaired elements (E2, E4, E6, E8, and E10) are absent. This finding indicates that sex is determined by the alternate segregation of the chain of 10 during spermatogenesis so that equal numbers of sperm bear either one of the two groups of five elements, i.e., five X and five Y chromosomes. Chromosome painting reveals that these X and Y chromosomes contain pairing (XY shared) and differential (X- or Y-specific) segments. Y differential regions must contain male-determining genes, and X differential regions should be dosage-compensated in the female. Two models for the evolution of the sex-determining system are presented. The resolution of the longstanding debate over the platypus karyotype is an important step toward the understanding of mechanisms of sex determination, dosage compensation, and karyotype evolution.

The Sky This Week, 2016 January 27 - February 2 - Naval Oceanography

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Oceanography Ice You are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Sky This Week The Sky This Week, 2016 January 27 - February 2 Info The Sky This Week, 2016 January 27 - February 2 Lest we forget. NOFS_Winter_2016_01small.jpg Dome of the Kaj Strand 1.55-meter (61-inch

Dark Sky Scotland

NASA Astrophysics Data System (ADS)

Hillier, D.

2008-06-01

Dark Sky Scotland (DSS) 2006-2008 is a nationwide programme of public and educational astronomy events. It demonstrates successful national partnerships with non-astronomy organisations and effective ways of delivering events in remote rural communities. DSS is looking for international partners for IYA2009.

Astronomy Education Under Dark Skies

NASA Astrophysics Data System (ADS)

Cecylia Molenda-Zakowicz, Joanna

2015-08-01

We have been providing professional support for the high school students and the astronomy teachers since 2007. Our efforts include organizing astronomy events that take from several hours, like, e.g., watching the transit of Venus, to several days, like the workshops organized in the framework of the projects 'School Workshops on Astronomy' (SWA) and 'Wygasz'.The SWA and Wygasz workshops include presentations by experts in astronomy and space science research, presentations prepared by students being supervised by those experts, hands-on interactive experience in the amateur astrophotography, various pencil-and-paper exercises, and other practical activities. We pay particular attention to familiarize the teachers and students with the idea and the necessity of protecting the dark sky. The format of these events allows also for some time for teachers to share ideas and best practices in teaching astronomy.All those activities are organized either in the Izera Dark-Sky Park in Poland or in other carefuly selected locations in which the beauty of the dark night sky can be appreciated.

Chromosomal rearrangements and karyotype evolution in carnivores revealed by chromosome painting

PubMed Central

Nie, W; Wang, J; Su, W; Wang, D; Tanomtong, A; Perelman, P L; Graphodatsky, A S; Yang, F

2012-01-01

Chromosomal evolution in carnivores has been revisited extensively using cross-species chromosome painting. Painting probes derived from flow-sorted chromosomes of the domestic dog, which has one of the most rearranged karyotypes in mammals and the highest dipoid number (2n=78) in carnivores, are a powerful tool in detecting both evolutionary intra- and inter-chromosomal rearrangements. However, only a few comparative maps have been established between dog and other non-Canidae species. Here, we extended cross-species painting with dog probes to seven more species representing six carnivore families: Eurasian lynx (Lynx lynx), the stone marten (Martes foina), the small Indian civet (Viverricula indica), the Asian palm civet (Paradoxurus hermaphrodites), Javan mongoose (Hepestes javanicas), the raccoon (Procyon lotor) and the giant panda (Ailuropoda melanoleuca). The numbers and positions of intra-chromosomal rearrangements were found to differ among these carnivore species. A comparative map between human and stone marten, and a map among the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), stone marten and human were also established to facilitate outgroup comparison and to integrate comparative maps between stone marten and other carnivores with such maps between human and other species. These comparative maps give further insight into genome evolution and karyotype phylogenetic relationships among carnivores, and will facilitate the transfer of gene mapping data from human, domestic dog and cat to other species. PMID:22086079

A framework to quantify karyotype variation associated with CHO cell line instability at a single-cell level.

PubMed

Baik, Jong Youn; Lee, Kelvin H

2017-05-01

Chinese hamster ovary (CHO) cells, the major mammalian host cells for biomanufacturing of therapeutic proteins, have been extensively investigated to enhance productivity and product quality. However, cell line instability resulting in unexpected changes in productivity or product quality continues to be a challenge. Based on previous reports about causes and characteristics of production instability, we hypothesized that chromosomal rearrangements due to genomic instability are associated with production instability and that these events can be characterized. We developed a production instability model using secreted alkaline phosphatase (SEAP)-expressing CHO cells (CHO-SEAP) as well as a framework to quantify chromosomal rearrangements by karyotyping. In the absence of methotrexate (MTX), CHO-SEAP cells exhibited a slightly increased growth rate, a significantly decreased specific productivity, and changes in the chromosomal rearrangement ratio of seven chromosomes. In contrast, when MTX was re-introduced, the growth rate and SEAP productivity reversed to the initial values, demonstrating the reversibility of production instability in CHO-SEAP cells. Fluorescence in situ hybridization analysis identified that the SEAP genes were incorporated in the chromosomal rearrangement (insertion) part of the der(Z9) chromosome. Karyotype analysis indicated that the insertion ratio of the der(Z9) chromosome decreased in the CHO-SEAP cells grown without MTX, demonstrating a correlation between chromosomal rearrangement and production instability. Our results support a mechanism for production instability, wherein a randomly generated chromosomal rearrangement (or genotype) results in cells with a growth advantage that is also associated with non (or low)-producing traits. As a result, the non-producing cells grow faster and thereby outgrow the producing population. Biotechnol. Bioeng. 2017;114: 1045-1053. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction.

PubMed

Codner, Gemma F; Lindner, Loic; Caulder, Adam; Wattenhofer-Donzé, Marie; Radage, Adam; Mertz, Annelyse; Eisenmann, Benjamin; Mianné, Joffrey; Evans, Edward P; Beechey, Colin V; Fray, Martin D; Birling, Marie-Christine; Hérault, Yann; Pavlovic, Guillaume; Teboul, Lydia

2016-08-05

Karyotypic integrity is essential for the successful germline transmission of alleles mutated in embryonic stem (ES) cells. Classical methods for the identification of aneuploidy involve cytological analyses that are both time consuming and require rare expertise to identify mouse chromosomes. As part of the International Mouse Phenotyping Consortium, we gathered data from over 1,500 ES cell clones and found that the germline transmission (GLT) efficiency of clones is compromised when over 50 % of cells harbour chromosome number abnormalities. In JM8 cells, chromosomes 1, 8, 11 or Y displayed copy number variation most frequently, whilst the remainder generally remain unchanged. We developed protocols employing droplet digital polymerase chain reaction (ddPCR) to accurately quantify the copy number of these four chromosomes, allowing efficient triage of ES clones prior to microinjection. We verified that assessments of aneuploidy, and thus decisions regarding the suitability of clones for microinjection, were concordant between classical cytological and ddPCR-based methods. Finally, we improved the method to include assay multiplexing so that two unstable chromosomes are counted simultaneously (and independently) in one reaction, to enhance throughput and further reduce the cost. We validated a PCR-based method as an alternative to classical karyotype analysis. This technique enables laboratories that are non-specialist, or work with large numbers of clones, to precisely screen ES cells for the most common aneuploidies prior to microinjection to ensure the highest level of germline transmission potential. The application of this method allows early exclusion of aneuploid ES cell clones in the ES cell to mouse conversion process, thus improving the chances of obtaining germline transmission and reducing the number of animals used in failed microinjection attempts. This method can be applied to any other experiments that require accurate analysis of the genome for

Transient Optical Sky survey

NASA Astrophysics Data System (ADS)

Hadjiyska, Elena Ivanova

2009-06-01

Optical transients have been studied in isolated cases, but never mapped into a comprehensive data base in the past. These events vary in duration and signature, yet they are united under the umbrella of time varying observables and represent a significant portion of the dynamical processes in the universe. The Transient Optical Sky Survey (TOSS) System is a dedicated, ground-based system of small optical telescopes, observing nightly at fixed Declination while gathering 90 sec exposures and thus creating a repeated partial map of the sky. Presented here is a brief overview of some of the signatures of transient events and a description of the TOSS system along with the data acquired during the 2008-2009 observing campaign, potentially producing over 100,000 light curves.

Point Source All Sky

NASA Image and Video Library

2003-03-27

This panoramic view encompasses the entire sky as seen by Two Micron All-Sky Survey. The measured brightnesses of half a billion stars (points) have been combined into colors representing three distinct wavelengths of infrared light: blue at 1.2 microns, green at 1.6 microns, and red at 2.2 microns. This image is centered on the core of our own Milky Way galaxy, toward the constellation of Sagittarius. The reddish stars seemingly hovering in the middle of the Milky Way's disc -- many of them never observed before -- trace the densest dust clouds in our galaxy. The two faint smudges seen in the lower right quadrant are our neighboring galaxies, the Small and Large Magellanic Clouds. http://photojournal.jpl.nasa.gov/catalog/PIA04250

Design of a device for sky light polarization measurements.

PubMed

Wang, Yujie; Hu, Xiaoping; Lian, Junxiang; Zhang, Lilian; Xian, Zhiwen; Ma, Tao

2014-08-14

Sky polarization patterns can be used both as indicators of atmospheric turbidity and as a sun compass for navigation. The objective of this study is to improve the precision of sky light polarization measurements by optimal design of the device used. The central part of the system is composed of a Charge Coupled Device (CCD) camera; a fish-eye lens and a linear polarizer. Algorithms for estimating parameters of the polarized light based on three images are derived and the optimal alignments of the polarizer are analyzed. The least-squares estimation is introduced for sky light polarization pattern measurement. The polarization patterns of sky light are obtained using the designed system and they follow almost the same patterns of the single-scattering Rayleigh model. Deviations of polarization angles between observation and the theory are analyzed. The largest deviations occur near the sun and anti-sun directions. Ninety percent of the deviations are less than 5° and 40% percent of them are less than 1°. The deviations decrease evidently as the degree of polarization increases. It also shows that the polarization pattern of the cloudy sky is almost identical as in the blue sky.

Design of a Device for Sky Light Polarization Measurements

PubMed Central

Wang, Yujie; Hu, Xiaoping; Lian, Junxiang; Zhang, Lilian; Xian, Zhiwen; Ma, Tao

2014-01-01

Sky polarization patterns can be used both as indicators of atmospheric turbidity and as a sun compass for navigation. The objective of this study is to improve the precision of sky light polarization measurements by optimal design of the device used. The central part of the system is composed of a Charge Coupled Device (CCD) camera; a fish-eye lens and a linear polarizer. Algorithms for estimating parameters of the polarized light based on three images are derived and the optimal alignments of the polarizer are analyzed. The least-squares estimation is introduced for sky light polarization pattern measurement. The polarization patterns of sky light are obtained using the designed system and they follow almost the same patterns of the single-scattering Rayleigh model. Deviations of polarization angles between observation and the theory are analyzed. The largest deviations occur near the sun and anti-sun directions. Ninety percent of the deviations are less than 5° and 40% percent of them are less than 1°. The deviations decrease evidently as the degree of polarization increases. It also shows that the polarization pattern of the cloudy sky is almost identical as in the blue sky. PMID:25196003

Reconstruction of Sky Illumination Domes from Ground-Based Panoramas

NASA Astrophysics Data System (ADS)

Coubard, F.; Lelégard, L.; Brédif, M.; Paparoditis, N.; Briottet, X.

2012-07-01

The knowledge of the sky illumination is important for radiometric corrections and for computer graphics applications such as relighting or augmented reality. We propose an approach to compute environment maps, representing the sky radiance, from a set of ground-based images acquired by a panoramic acquisition system, for instance a mobile-mapping system. These images can be affected by important radiometric artifacts, such as bloom or overexposure. A Perez radiance model is estimated with the blue sky pixels of the images, and used to compute additive corrections in order to reduce these radiometric artifacts. The sky pixels are then aggregated in an environment map, which still suffers from discontinuities on stitching edges. The influence of the quality of estimated sky radiance on the simulated light signal is measured quantitatively on a simple synthetic urban scene; in our case, the maximal error for the total sensor radiance is about 10%.

Science with the VLA Sky Survey (VLASS)

NASA Astrophysics Data System (ADS)

Murphy, Eric J.; Baum, Stefi Alison; Brandt, W. Niel; Chandler, Claire J.; Clarke, Tracy E.; Condon, James J.; Cordes, James M.; Deustua, Susana E.; Dickinson, Mark; Gugliucci, Nicole E.; Hallinan, Gregg; Hodge, Jacqueline; Lang, Cornelia C.; Law, Casey J.; Lazio, Joseph; Mao, Sui Ann; Myers, Steven T.; Osten, Rachel A.; Richards, Gordon T.; Strauss, Michael A.; White, Richard L.; Zauderer, Bevin; Extragalactic Science Working Group, Galactic Science Working Group, Transient Science Working Group

2015-01-01

The Very Large Array Sky Survey (VLASS) was initiated to develop and carry out a new generation large radio sky survey using the recently upgraded Karl G. Jansky Very Large Array. The proposed VLASS is a modern, multi-tiered survey with the VLA designed to provide a broad, cohesive science program with forefront scientific impact, capable of generating unexpected scientific discoveries, generating involvement from all astronomical communities, and leaving a lasting legacy value for decades.VLASS will observe from 2-4 GHz and is structured to combine comprehensive all sky coverage with sequentially deeper coverage in carefully identified parts of the sky, including the Galactic plane, and will be capable of informing time domain studies. This approach enables both focused and wide ranging scientific discovery through the coupling of deeper narrower tiers with increasing sky coverage at shallower depths, addressing key science issues and providing a statistical interpretational framework. Such an approach provides both astronomers and the citizen scientist with information for every accessible point of the radio sky, while simultaneously addressing fundamental questions about the nature and evolution of astrophysical objects.VLASS will follow the evolution of galaxies and their central black hole engines, measure the strength and topology of cosmic magnetic fields, unveil hidden explosions throughout the Universe, and chart our galaxy for stellar remnants and ionized bubbles. Multi-wavelength communities studying rare objects, the Galaxy, radio transients, or galaxy evolution out to the peak of the cosmic star formation rate density will equally benefit from VLASS.Early drafts of the VLASS proposal are available at the VLASS website (https://science.nrao.edu/science/surveys/vlass/vlass), and the final proposal will be posted in early January 2015 for community comment before undergoing review in March 2015. Upon approval, VLASS would then be on schedule to start

The SuperCOSMOS all-sky galaxy catalogue

NASA Astrophysics Data System (ADS)

Peacock, J. A.; Hambly, N. C.; Bilicki, M.; MacGillivray, H. T.; Miller, L.; Read, M. A.; Tritton, S. B.

2016-10-01

We describe the construction of an all-sky galaxy catalogue, using SuperCOSMOS scans of Schmidt photographic plates from the UK Schmidt Telescope and Second Palomar Observatory Sky Survey. The photographic photometry is calibrated using Sloan Digital Sky Survey data, with results that are linear to 2 per cent or better. All-sky photometric uniformity is achieved by matching plate overlaps and also by requiring homogeneity in optical-to-2MASS colours, yielding zero-points that are uniform to 0.03 mag or better. The typical AB depths achieved are BJ < 21, RF < 19.5 and IN < 18.5, with little difference between hemispheres. In practice, the IN plates are shallower than the BJ and RF plates, so for most purposes we advocate the use of a catalogue selected in these two latter bands. At high Galactic latitudes, this catalogue is approximately 90 per cent complete with 5 per cent stellar contamination; we quantify how the quality degrades towards the Galactic plane. At low latitudes, there are many spurious galaxy candidates resulting from stellar blends: these approximately match the surface density of true galaxies at |b| = 30°. Above this latitude, the catalogue limited in BJ and RF contains in total about 20 million galaxy candidates, of which 75 per cent are real. This contamination can be removed, and the sky coverage extended, by matching with additional data sets. This SuperCOSMOS catalogue has been matched with 2MASS and with WISE, yielding quasi-all-sky samples of respectively 1.5 million and 18.5 million galaxies, to median redshifts of 0.08 and 0.20. This legacy data set thus continues to offer a valuable resource for large-angle cosmological investigations.

Modelling and Display of the Ultraviolet Sky

NASA Astrophysics Data System (ADS)

Daniels, J.; Henry, R.; Murthy, J.; Allen, M.; McGlynn, T. A.; Scollick, K.

1994-12-01

A computer program is currently under development to model in 3D - one dimension of which is wavelength - all the known and major speculated sources of ultraviolet (900 A - 3100 A ) radiation over the celestial sphere. The software is being written in Fortran 77 and IDL and currently operates under IRIX (the operating system of the Silicon Graphics Iris Machine); all output models are in FITS format. Models along with display software will become available to the astronomical community. The Ultraviolet Sky Model currently includes the Zodiacal Light, Point Sources of Emission, and the Diffuse Galactic Light. The Ultraviolet Sky Model is currently displayed using SkyView: a package under development at NASA/ GSFC, which allows users to retrieve and display publically available all-sky astronomical survey data (covering many wavebands) over the Internet. We present a demonstration of the SkyView display of the Ultraviolet Model. The modelling is a five year development project: the work illustrated here represents product output at the end of year one. Future work includes enhancements to the current models and incorporation of the following models: Galactic Molecular Hydrogen Fluorescence; Galactic Highly Ionized Atomic Line Emission; Integrated Extragalactic Light; and speculated sources in the intergalactic medium such as Ionized Plasma and radiation from Non-Baryonic Particle Decay. We also present a poster which summarizes the components of the Ultraviolet Sky Model and outlines a further package that will be used to display the Ultraviolet Model. This work is supported by United States Air Force Contract F19628-93-K-0004. Dr J. Daniels is supported with a post-doctoral Fellowship from the Leverhulme Foundation, London, United Kingdom. We are also grateful for the encouragement of Dr Stephen Price (Phillips Laboratory, Hanscomb Air Force Base, MA)

Stability of the nine sky quality meters in the Dutch night sky brightness monitoring network.

PubMed

den Outer, Peter; Lolkema, Dorien; Haaima, Marty; van der Hoff, Rene; Spoelstra, Henk; Schmidt, Wim

2015-04-22

In the context of monitoring abundance of artificial light at night, the year-to-year stability of Sky Quality Meters (SQMs) is investigated by analysing intercalibrations derived from two measurement campaigns that were held in 2011 and 2012. An intercalibration comprises a light sensitivity factor and an offset for each SQM. The campaigns were concerned with monitoring measurements, each lasting one month. Nine SQMs, together forming the Night Sky Brightness Monitoring network (MHN) in The Netherlands, were involved in both campaigns. The stability of the intercalibration of these instruments leads to a year-to-year uncertainty (standard deviation) of 5% in the measured median luminance occurring at the MHN monitoring locations. For the 10-percentiles and 90-percentiles, we find 8% and 4%, respectively. This means that, for urban and industrial areas, changes in the sky brightness larger than 5% become detectable. Rural and nature areas require an 8%-9% change of the median luminance to be detectable. The light sensitivety agrees within 8% for the whole group of SQMs.

Day/night whole sky imagers for 24-h cloud and sky assessment: history and overview.

PubMed

Shields, Janet E; Karr, Monette E; Johnson, Richard W; Burden, Art R

2013-03-10

A family of fully automated digital whole sky imagers (WSIs) has been developed at the Marine Physical Laboratory over many years, for a variety of research and military applications. The most advanced of these, the day/night whole sky imagers (D/N WSIs), acquire digital imagery of the full sky down to the horizon under all conditions from full sunlight to starlight. Cloud algorithms process the imagery to automatically detect the locations of cloud for both day and night. The instruments can provide absolute radiance distribution over the full radiance range from starlight through daylight. The WSIs were fielded in 1984, followed by the D/N WSIs in 1992. These many years of experience and development have resulted in very capable instruments and algorithms that remain unique. This article discusses the history of the development of the D/N WSIs, system design, algorithms, and data products. The paper cites many reports with more detailed technical documentation. Further details of calibration, day and night algorithms, and cloud free line-of-sight results will be discussed in future articles.

Spectroscopic and Photometric Survey of Northern Sky for the ESA PLATO space mission

NASA Astrophysics Data System (ADS)

Ženovienė, Renata; Bagdonas, Vilius; Drazdauskas, Arnas; Janulis, Rimvydas; Klebonas, Lukas; Mikolaitis, Šarūnas; Pakštienė, Erika; Tautvaišienė, Gražina

2018-04-01

The ESA-PLATO 2.0 mission will perform an in-depth analysis of the large part of the sky-sphere searching for extraterrestrial telluric-like planets. At the Molėtai Astronomical Observatory of Vilnius University, we started a spectroscopic and photometric survey of the northern sky fields that potentially will be targeted by the PLATO mission. We aim to contribute in developing the PLATO input catalogue by delivering a long-duration stellar variability information and a full spectroscopic characterization of brightest targets. First results of this survey are overviewed.

The Statistical Analysis of Global Oxygen ENAs Sky Maps from IBEX-Lo: Implication on the ENA sources

NASA Astrophysics Data System (ADS)

Park, J.; Kucharek, H.; Moebius, E.; Bochsler, P. A.

2013-12-01

Energetic Neutral Atoms (ENAs) created in the interstellar medium and heliospheric interface have been observed by the Interstellar Boundary Explorer (IBEX) orbiting the Earth on a highly elliptical trajectory since 2008. The science payload on this small spacecraft consists of two highly sensitive single-pixel ENA cameras: the IBEX-Lo sensor covering the energy ranges from 0.01 to 2 keV and the IBEX-Hi sensor covering the energy ranges from 0.3 to 6 keV. In order to measure the incident ENAs, the IBEX-Lo sensor uses a conversion surface to convert neutrals to negative ions. After passing an electrostatic analyzer, they are separated by species (H and heavier species) via a time-of-flight mass spectrometer. All-sky H ENA maps over three years were completed and show two significant features: the interstellar H and He neutral flow is shown at the low energy ranges (0.01 to 0.11 keV) and the ribbon appears at the higher energies (0.21 to 1.35 keV). Like in the hydrogen sky maps, the interstellar O+Ne neutral flow appears in all-sky O ENA maps at the energy ranges from 0.21 to 0.87 keV The distributed heliospheric Oxygen ENAs over the entire energy ranges is determined from very low counting statistics. In this study, we therefore apply the Cash's C statistics (Cash, 1979) and determine the upper and lower confidence limits (Gehrels, 1986) for the statistical significance among all events in all-sky O ENA maps. These newly created sky maps specifically show the distributed heliospheric O ENA flux surrounding the interstellar O+Ne neutral flow. This enhancement distributed ENA flux will provide us new insights into the ion population creation the ENA emission. It seems that there is no signature of ribbon in all-sky O ENA maps. If one assumes that the generation mechanism of the ribbon is the same for hydrogen and oxygen, the location of source ion population may be closer to the heliosheath. In this poster we will discuss all the results of this study and their

Reflective all-sky thermal infrared cloud imager

DOE Office of Scientific and Technical Information (OSTI.GOV)

Redman, Brian J.; Shaw, Joseph A.; Nugent, Paul W.

A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference thatmore » is used to estimate and remove thermal emission from the metal sphere. In conclusion, once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.« less

Reflective all-sky thermal infrared cloud imager

DOE PAGES

Redman, Brian J.; Shaw, Joseph A.; Nugent, Paul W.; ...

2018-04-17

A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference thatmore » is used to estimate and remove thermal emission from the metal sphere. In conclusion, once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.« less

Reflective all-sky thermal infrared cloud imager.

PubMed

Redman, Brian J; Shaw, Joseph A; Nugent, Paul W; Clark, R Trevor; Piazzolla, Sabino

2018-04-30

A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference that is used to estimate and remove thermal emission from the metal sphere. Once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.

Asexual Reproduction Does Not Apparently Increase the Rate of Chromosomal Evolution: Karyotype Stability in Diploid and Triploid Clonal Hybrid Fish (Cobitis, Cypriniformes, Teleostei)

PubMed Central

Majtánová, Zuzana; Choleva, Lukáš; Symonová, Radka; Ráb, Petr; Kotusz, Jan; Pekárik, Ladislav; Janko, Karel

2016-01-01

Interspecific hybridization, polyploidization and transitions from sexuality to asexuality considerably affect organismal genomes. Especially the last mentioned process has been assumed to play a significant role in the initiation of chromosomal rearrangements, causing increased rates of karyotype evolution. We used cytogenetic analysis and molecular dating of cladogenetic events to compare the rate of changes of chromosome morphology and karyotype in asexually and sexually reproducing counterparts in European spined loach fish (Cobitis). We studied metaphases of three sexually reproducing species and their diploid and polyploid hybrid clones of different age of origin. The material includes artificial F1 hybrid strains, representatives of lineage originated in Holocene epoch, and also individuals of an oldest known age to date (roughly 0.37 MYA). Thereafter we applied GISH technique as a marker to differentiate parental chromosomal sets in hybrids. Although the sexual species accumulated remarkable chromosomal rearrangements after their speciation, we observed no differences in chromosome numbers and/or morphology among karyotypes of asexual hybrids. These hybrids possess chromosome sets originating from respective parental species with no cytogenetically detectable recombinations, suggesting their integrity even in a long term. The switch to asexual reproduction thus did not provoke any significant acceleration of the rate of chromosomal evolution in Cobitis. Asexual animals described in other case studies reproduce ameiotically, while Cobitis hybrids described here produce eggs likely through modified meiosis. Therefore, our findings indicate that the effect of asexuality on the rate of chromosomal change may be context-dependent rather than universal and related to particular type of asexual reproduction. PMID:26808475

Asexual Reproduction Does Not Apparently Increase the Rate of Chromosomal Evolution: Karyotype Stability in Diploid and Triploid Clonal Hybrid Fish (Cobitis, Cypriniformes, Teleostei).

PubMed

Majtánová, Zuzana; Choleva, Lukáš; Symonová, Radka; Ráb, Petr; Kotusz, Jan; Pekárik, Ladislav; Janko, Karel

2016-01-01

Interspecific hybridization, polyploidization and transitions from sexuality to asexuality considerably affect organismal genomes. Especially the last mentioned process has been assumed to play a significant role in the initiation of chromosomal rearrangements, causing increased rates of karyotype evolution. We used cytogenetic analysis and molecular dating of cladogenetic events to compare the rate of changes of chromosome morphology and karyotype in asexually and sexually reproducing counterparts in European spined loach fish (Cobitis). We studied metaphases of three sexually reproducing species and their diploid and polyploid hybrid clones of different age of origin. The material includes artificial F1 hybrid strains, representatives of lineage originated in Holocene epoch, and also individuals of an oldest known age to date (roughly 0.37 MYA). Thereafter we applied GISH technique as a marker to differentiate parental chromosomal sets in hybrids. Although the sexual species accumulated remarkable chromosomal rearrangements after their speciation, we observed no differences in chromosome numbers and/or morphology among karyotypes of asexual hybrids. These hybrids possess chromosome sets originating from respective parental species with no cytogenetically detectable recombinations, suggesting their integrity even in a long term. The switch to asexual reproduction thus did not provoke any significant acceleration of the rate of chromosomal evolution in Cobitis. Asexual animals described in other case studies reproduce ameiotically, while Cobitis hybrids described here produce eggs likely through modified meiosis. Therefore, our findings indicate that the effect of asexuality on the rate of chromosomal change may be context-dependent rather than universal and related to particular type of asexual reproduction.

An All-Sky Portable (ASP) Optical Catalogue

NASA Astrophysics Data System (ADS)

Flesch, Eric Wim

2017-06-01

This optical catalogue combines the all-sky USNO-B1.0/A1.0 and most-sky APM catalogues, plus overlays of SDSS optical data, into a single all-sky map presented in a sparse binary format that is easily downloaded at 9 Gb zipped. Total count is 1 163 237 190 sources and each has J2000 astrometry, red and blue magnitudes with PSFs and variability indicator, and flags for proper motion, epoch, and source survey and catalogue for each of the photometry and astrometry. The catalogue is available on http://quasars.org/asp.html, and additional data for this paper is available at http://dx.doi.org/10.4225/50/5807fbc12595f.

Acute megakaryoblastic leukemia after transient myeloproliferative disorder with clonal karyotype evolution in a phenotypically normal neonate.

PubMed

Polski, Jacek M; Galambos, Csaba; Gale, Gordon B; Dunphy, Cherie H; Evans, H Lance; Batanian, Jacqueline R

2002-01-01

We report a case of transient myeloproliferative disorder (TMD) in a neonate without features of Down syndrome (DS) with clonal karyotype evolution, after apparent spontaneous resolution of TMD, but eventually progressing to acute megakaryoblastic leukemia (AMKL). The patient had petechiae, thrombocytopenia, and blastemia. Trisomy 21 with a satellited Y chromosome (Yqs) was found in proliferating blasts. A stimulated peripheral blood culture confirmed the constitutional origin of the Yqs, but did not reveal the presence of any trisomic 21 cell. By the age of 3 months, clonal chromosome evolution in the form of an interstitial deletion of the long-arm of chromosome 13 [del(13)(q13q31)] was detected along with trisomy 21 in unstimulated bone marrow cultures. However, remission was achieved without treatment at the age of 4 months. Trisomy 21 and del(13)(q13q31) were not identified in either cytogenetics or fluorescence in situ hybridization studies at that time. The child was asymptomatic until the age of 20 months when anemia and thrombocytopenia prompted a bone marrow biopsy, revealing changes consistent with AMKL. The remission proceeded by clonal karyotype evolution in a neonate with TMD demonstrates that clonal karyotype evolution does not indicate an immediately progressive disease. However, the development of AMKL after TMD in this case illustrates the increased risk for leukemia in TMD cases, even without DS. The gradual clonal evolution of the blasts in our patient suggests that "multiple hits" oncogenesis applies to TMD progression to acute leukemia.

SkyGlowNet as a Vehicle for STEM Education

NASA Astrophysics Data System (ADS)

Flurchick, K. M.; Craine, E. R.; Culver, R. B.; Deal, S.; Foster, C.

2013-06-01

SkyGlowNet is an emerging network of internet-enabled sky brightness meters (iSBM) that continuously record and log sky brightness at the zenith of each network node site. Also logged are time and weather information. These data are polled at a user-defined frequency, typically about every 45 seconds. The data are uploaded to the SkyGlowNet website, initially to a proprietary area where the data for each institution are embargoed for one or two semesters as students conduct research projects with their data. When released from embargo, the data are moved to another area where they can be accessed by all SkyGlowNet participants. Some of the data are periodically released to a public area on the website. In this presentation we describe the data formats and provide examples of both data content and the structure of the website. Early data from two nodes in the SkyGlowNet have been characterized, both quantitatively and qualitatively, by undergraduate students at NCAT. A summary of their work is presented here. These analyses are of utility in helping those new to looking at these data to understand how to interpret them. In particular, we demonstrate differences between effects on light at night and sky brightness due to astronomical cycles, atmospheric phenomena, and artificial lighting. Quantitative characterization of the data includes statistical analyses of parsed segments of the temporal data stream. An attempt is made to relate statistical metrics to specific types of phenomena.

Measuring high-resolution sky luminance distributions with a CCD camera.

PubMed

Tohsing, Korntip; Schrempf, Michael; Riechelmann, Stefan; Schilke, Holger; Seckmeyer, Gunther

2013-03-10

We describe how sky luminance can be derived from a newly developed hemispherical sky imager (HSI) system. The system contains a commercial compact charge coupled device (CCD) camera equipped with a fish-eye lens. The projection of the camera system has been found to be nearly equidistant. The luminance from the high dynamic range images has been calculated and then validated with luminance data measured by a CCD array spectroradiometer. The deviation between both datasets is less than 10% for cloudless and completely overcast skies, and differs by no more than 20% for all sky conditions. The global illuminance derived from the HSI pictures deviates by less than 5% and 20% under cloudless and cloudy skies for solar zenith angles less than 80°, respectively. This system is therefore capable of measuring sky luminance with the high spatial and temporal resolution of more than a million pixels and every 20 s respectively.

Karyotypic diversity in seven Amazonian anurans in the genus Hypsiboas (family Hylidae).

PubMed

de Mattos, Thais Lemos; Coelho, Ana Carolina; Schneider, Carlos Henrique; Telles, David Otávio Carmo; Menin, Marcelo; Gross, Maria Claudia

2014-04-04

Hypsiboas species have been divided into seven groups using morphological and genetic characters, but for most of the species, there is no cytogenetic information available. A cytogenetic analysis using conventional staining, C-banding, silver staining, and fluorescence in situ hybridization (FISH) with telomeric sequence probes were used to investigate the karyotype of seven Amazon species of the genus Hypsiboas belonging to the following intrageneric groups: H. punctatus (H. cinerascens), H. semilineatus (H. boans, H. geographicus, and H. wavrini), and H. albopunctatus (H. lanciformis, H. multifasciatus, and H. raniceps). The aim was to differentiate between the karyotypes and use the chromosomal markers to distinguish between the Hypsiboas groups. The data were compared with a previous phylogenetic proposal for these anurans. In addition, H. lanciformis, H. boans, and H. wavrini are described here for the first time, and we characterize the diploid numbers for H. cinerascens, H. geographicus, H. multifasciatus, and H. raniceps. The diploid number for all of the species analyzed was 24, with the exception of Hypsiboas lanciformis, which had 2n = 22 chromosomes. The constitutive heterochromatin distribution, nucleolar organizer region locations, and interstitial telomeric sites differed between the species. A hypothesis that the heterochromatic patterns are evolving is proposed, with the divergence of the groups probably involving events such as an increase in the heterochromatin in the species of the H. semilineatus group. The FISH conducted with the telomeric probes detected sites in the terminal regions of all of the chromosomes of all species. Interstitial telomeric sites were detected in three species belonging to the H. semilineatus group: H. boans, H. geographicus, and H. wavrini. The results of this study reinforce the complexity previously observed within the genus Hypsiboas and in the different groups that compose this taxon. More studies are needed

Karyotypic diversity in seven Amazonian anurans in the genus Hypsiboas (family Hylidae)

PubMed Central

2014-01-01

Background Hypsiboas species have been divided into seven groups using morphological and genetic characters, but for most of the species, there is no cytogenetic information available. A cytogenetic analysis using conventional staining, C-banding, silver staining, and fluorescence in situ hybridization (FISH) with telomeric sequence probes were used to investigate the karyotype of seven Amazon species of the genus Hypsiboas belonging to the following intrageneric groups: H. punctatus (H. cinerascens), H. semilineatus (H. boans, H. geographicus, and H. wavrini), and H. albopunctatus (H. lanciformis, H. multifasciatus, and H. raniceps). The aim was to differentiate between the karyotypes and use the chromosomal markers to distinguish between the Hypsiboas groups. The data were compared with a previous phylogenetic proposal for these anurans. In addition, H. lanciformis, H. boans, and H. wavrini are described here for the first time, and we characterize the diploid numbers for H. cinerascens, H. geographicus, H. multifasciatus, and H. raniceps. Results The diploid number for all of the species analyzed was 24, with the exception of Hypsiboas lanciformis, which had 2n = 22 chromosomes. The constitutive heterochromatin distribution, nucleolar organizer region locations, and interstitial telomeric sites differed between the species. A hypothesis that the heterochromatic patterns are evolving is proposed, with the divergence of the groups probably involving events such as an increase in the heterochromatin in the species of the H. semilineatus group. The FISH conducted with the telomeric probes detected sites in the terminal regions of all of the chromosomes of all species. Interstitial telomeric sites were detected in three species belonging to the H. semilineatus group: H. boans, H. geographicus, and H. wavrini. Conclusion The results of this study reinforce the complexity previously observed within the genus Hypsiboas and in the different groups that compose this

Accuracy of the hypothetical sky-polarimetric Viking navigation versus sky conditions: revealing solar elevations and cloudinesses favourable for this navigation method

NASA Astrophysics Data System (ADS)

Száz, Dénes; Farkas, Alexandra; Barta, András; Kretzer, Balázs; Blahó, Miklós; Egri, Ádám; Szabó, Gyula; Horváth, Gábor

2017-09-01

According to Thorkild Ramskou's theory proposed in 1967, under overcast and foggy skies, Viking seafarers might have used skylight polarization analysed with special crystals called sunstones to determine the position of the invisible Sun. After finding the occluded Sun with sunstones, its elevation angle had to be measured and its shadow had to be projected onto the horizontal surface of a sun compass. According to Ramskou's theory, these sunstones might have been birefringent calcite or dichroic cordierite or tourmaline crystals working as polarizers. It has frequently been claimed that this method might have been suitable for navigation even in cloudy weather. This hypothesis has been accepted and frequently cited for decades without any experimental support. In this work, we determined the accuracy of this hypothetical sky-polarimetric Viking navigation for 1080 different sky situations characterized by solar elevation θ and cloudiness ρ, the sky polarization patterns of which were measured by full-sky imaging polarimetry. We used the earlier measured uncertainty functions of the navigation steps 1, 2 and 3 for calcite, cordierite and tourmaline sunstone crystals, respectively, and the newly measured uncertainty function of step 4 presented here. As a result, we revealed the meteorological conditions under which Vikings could have used this hypothetical navigation method. We determined the solar elevations at which the navigation uncertainties are minimal at summer solstice and spring equinox for all three sunstone types. On average, calcite sunstone ensures a more accurate sky-polarimetric navigation than tourmaline and cordierite. However, in some special cases (generally at 35° ≤ θ ≤ 40°, 1 okta ≤ ρ ≤ 6 oktas for summer solstice, and at 20° ≤ θ ≤ 25°, 0 okta ≤ ρ ≤ 4 oktas for spring equinox), the use of tourmaline and cordierite results in smaller navigation uncertainties than that of calcite. Generally, under clear or less cloudy

The Mythology of the Night Sky

NASA Astrophysics Data System (ADS)

Falkner, David E.

The word "planet" comes from the Latin word planeta and the Greek word planes, which means "wanderer." When the ancient Greeks studied the night sky they noticed that most of the stars remained in the same position relative to all the other stars, but a few stars seem to move in the sky from day to day, week to week, and month to month. The Greeks called these rogue stars "wanderers" because they wandered through the starry background.

Mapping the Infrared Universe: The Entire WISE Sky

NASA Image and Video Library

2012-03-14

This is a mosaic of the images covering the entire sky as observed by NASA Wide-field Infrared Survey Explorer WISE, part of its All-Sky Data Release. In this mosaic, the Milky Way Galaxy runs horizontally across the map.

Introduction: The Night Sky Back Home

NASA Astrophysics Data System (ADS)

Upgren, A. R.

2001-12-01

Light pollution is a proper and fitting subject of great concern to all astronomers. Back before 1988, when the International Dark-Sky Association was founded, astronomical concern centered around and was mostly restricted to the large southwestern mountaintop observatories. This is understandable since these largest telescopes demand the darkest possible skies. The IDA was promoted and organized with this goal in mind. Today the IDA numbers almost 8000 members and is dominated by environmentalists and lighting engineers as much as or more than professional astronomers. Amateur astronomers from skygazers to those with CCD's on their telescopes are now of great importance in the realm of light pollution awareness and control. They are busy in almost every state and province working to pass ordinances restricting the worst in outdoor lighting. For example. Connecticut, a state with little professional astronomical observation, has passed the first law to require FCO (full-cutoff shielding) on every new and renovated street and highway light in the state. The needs of astronomers in places like New England differ from those of Arizona, California, and Hawaii where LPS is much preferred to HPS illumination. In the lesser climates, FCO and lumen constraints are of much greater concern. Almost every state still has very dark sky areas, well worth preserving. It is of the greatest importance for amateurs and professionals to work together to preserve dark skies wherever they are found. Our profession needs for its continued health, places near population centers where the Milky Way can still be seen. Many future astronomers will be brought into the field by the sights of a dark sky. I encourage the AAS to become more active, individually and collectively, in the multitude of efforts now in progress across the continent.

Daytime Water Detection Based on Sky Reflections

NASA Technical Reports Server (NTRS)

Rankin, Arturo L.; Matthies, Larry H.; Bellutta, Paolo

2011-01-01

Robust water detection is a critical perception requirement for unmanned ground vehicle (UGV) autonomous navigation. This is particularly true in wide-open areas where water can collect in naturally occurring terrain depressions during periods of heavy precipitation and form large water bodies. One of the properties of water useful for detecting it is that its surface acts as a horizontal mirror at large incidence angles. Water bodies can be indirectly detected by detecting reflections of the sky below the horizon in color imagery. The Jet Propulsion Laboratory (JPL) has implemented a water detector based on sky reflections that geometrically locates the pixel in the sky that is reflecting on a candidate water pixel on the ground and predicts if the ground pixel is water based on color similarity and local terrain features. This software detects water bodies in wide-open areas on cross-country terrain at mid- to far-range using imagery acquired from a forward-looking stereo pair of color cameras mounted on a terrestrial UGV. In three test sequences approaching a pond under a clear, overcast, and cloudy sky, the true positive detection rate was 100% when the UGV was beyond 7 meters of the water's leading edge and the largest false positive detection rate was 0.58%. The sky reflection based water detector has been integrated on an experimental unmanned vehicle and field tested at Ft. Indiantown Gap, PA, USA.

Full-sky, High-resolution Maps of Interstellar Dust

NASA Astrophysics Data System (ADS)

Meisner, Aaron Michael

We present full-sky, high-resolution maps of interstellar dust based on data from the Wide-field Infrared Survey Explorer (WISE) and Planck missions. We describe our custom processing of the entire WISE 12 micron All-Sky imaging data set, and present the resulting 15 arcsecond resolution, full-sky map of diffuse Galactic dust emission, free of compact sources and other contaminating artifacts. Our derived 12 micron dust map offers angular resolution far superior to that of all other existing full-sky, infrared dust emission maps, revealing a wealth of small-scale filamentary structure. We also apply the Finkbeiner et al. (1999) two-component thermal dust emission model to the Planck HFI maps. We derive full-sky 6.1 arcminute resolution maps of dust optical depth and temperature by fitting this two-component model to Planck 217-857 GHz along with DIRBE/IRAS 100 micron data. In doing so, we obtain the first ever full-sky 100-3000 GHz Planck-based thermal dust emission model, as well as a dust temperature correction with ~10 times enhanced angular resolution relative to DIRBE-based temperature maps. Analyzing the joint Planck/DIRBE dust spectrum, we show that two-component models provide a better fit to the 100-3000 GHz emission than do single-MBB models, though by a lesser margin than found by Finkbeiner et al. (1999) based on FIRAS and DIRBE. We find that, in diffuse sky regions, our two-component 100-217 GHz predictions are on average accurate to within 2.2%, while extrapolating the Planck Collaboration (2013) single-MBB model systematically underpredicts emission by 18.8% at 100 GHz, 12.6% at 143 GHz and 7.9% at 217 GHz. We calibrate our two-component optical depth to reddening, and compare with reddening estimates based on stellar spectra. We find the dominant systematic problems in our temperature/reddening maps to be zodiacal light on large angular scales and the cosmic infrared background anisotropy on small angular scales. Future work will focus on combining

The VLA Sky Survey

NASA Astrophysics Data System (ADS)

Lacy, Mark; VLASS Survey Team, VLASS Survey Science Group

2018-01-01

The VLA Sky Survey (VLASS), which began in September 2017, is a seven year project to image the entire sky north of Declination -40 degrees in three epochs. The survey is being carried out in I,Q and U polarization at a frequency of 2-4GHz, and a resolution of 2.5 arcseconds, with each epoch being separated by 32 months. Raw data from the survey, along with basic "quicklook" images are made freely available shortly after observation. Within a few months, NRAO will begin making available further basic data products, including refined images and source lists. In this talk I shall describe the science goals and methodology of the survey, the current survey status, and some early results, along with plans for collaborations with external groups to produce enhanced, high level data products.

The moon illusion: I. How high is the sky?

PubMed

Baird, J C; Wagner, M

1982-09-01

The most common explanations of the moon illusion assume that the moon is seen at a specific distance in the sky, which is perceived as a definite surface. A decrease in the apparent distance to the sky with increasing elevation presumably leads to a corresponding decrease in apparent size. In Experiment 1 observers (N = 24) gave magnitude estimates of the distance to the night sky at different elevations. The results did not support the flattened-dome hypothesis. In Experiment 2 observers (N = 20) gave magnitude estimates of the distance to the sky at points around a 360 degrees circle just above the horizon. The results were consistent with those of Experiment 1, and in addition, estimates were highly correlated with the physical distances of buildings at the horizon. In a third, control experiment, observers (N = 20) gave magnitude estimates of the distances of buildings at the horizon. A power function fit the relation between estimated and physical distance (exponent = 1.17) as well as the relation between estimates of the sky points above the buildings (Experiment 2) and estimates of building distances (exponent = .46). Taken together, the results disconfirm all theories that attribute the moon illusion to a "sky illusion" of the sort exemplified by the flattened-dome hypothesis.

Resolution and evolution of the duck-billed platypus karyotype with an X1Y1X2Y2X3Y3X4Y4X5Y5 male sex chromosome constitution

PubMed Central

Rens, Willem; Grützner, Frank; O'Brien, Patricia C. M.; Fairclough, Helen; Graves, Jennifer A. M.; Ferguson-Smith, Malcolm A.

2004-01-01

The platypus (2n = 52) has a complex karyotype that has been controversial over the last three decades. The presence of unpaired chromosomes and an unknown sex-determining system especially has defied attempts at conventional analysis. This article reports on the preparation of chromosome-specific probes from flow-sorted chromosomes and their application in the identification and classification of all platypus chromosomes. This work reveals that the male karyotype has 21 pairs of chromosomes and 10 unpaired chromosomes (E1-E10), which are linked by short regions of homology to form a multivalent chain in meiosis. The female karyotype differs in that five of these unpaired elements (E1, E3, E5, E7, and E9) are each present in duplicate, whereas the remaining five unpaired elements (E2, E4, E6, E8, and E10) are absent. This finding indicates that sex is determined by the alternate segregation of the chain of 10 during spermatogenesis so that equal numbers of sperm bear either one of the two groups of five elements, i.e., five X and five Y chromosomes. Chromosome painting reveals that these X and Y chromosomes contain pairing (XY shared) and differential (X- or Y-specific) segments. Y differential regions must contain male-determining genes, and X differential regions should be dosage-compensated in the female. Two models for the evolution of the sex-determining system are presented. The resolution of the longstanding debate over the platypus karyotype is an important step toward the understanding of mechanisms of sex determination, dosage compensation, and karyotype evolution. PMID:15534209

All-sky homogeneity of precipitable water vapour over Paranal

NASA Astrophysics Data System (ADS)

Querel, Richard R.; Kerber, Florian

2014-08-01

A Low Humidity and Temperature Profiling (LHATPRO) microwave radiometer, manufactured by Radiometer Physics GmbH (RPG), is used to monitor sky conditions over ESO's Paranal observatory in support of VLT science operations. The unit measures several channels across the strong water vapour emission line at 183 GHz, necessary for resolving the low levels of precipitable water vapour (PWV) that are prevalent on Paranal (median ~2.4 mm). The instrument consists of a humidity profiler (183-191 GHz), a temperature profiler (51-58 GHz), and an infrared camera (~10 μm) for cloud detection. We present, for the first time, a statistical analysis of the homogeneity of all-sky PWV using 21 months of periodic (every 6 hours) all-sky scans from the radiometer. These data provide unique insight into the spatial and temporal variation of atmospheric conditions relevant for astronomical observations, particularly in the infrared. We find the PWV over Paranal to be remarkably homogeneous across the sky down to 27.5° elevation with a median variation of 0.32 mm (peak to valley) or 0.07 mm (rms). The homogeneity is a function of the absolute PWV but the relative variation is fairly constant at 10-15% (peak to valley) and 3% (rms). Such variations will not be a significant issue for analysis of astronomical data. Users at ESO can specify PWV - measured at zenith - as an ambient constraint in service mode to enable, for instance, very demanding observations in the infrared that can only be conducted during periods of very good atmospheric transmission and hence low PWV. We conclude that in general it will not be necessary to add another observing constraint for PWV homogeneity to ensure integrity of observations. For demanding observations requiring very low PWV, where the relative variation is higher, the optimum support could be provided by observing with the LHATPRO in the same line-of-sight simultaneously. Such a mode of operations has already been tested but will have to be

Preferential accumulation of sex and Bs chromosomes in biarmed karyotypes by meiotic drive and rates of chromosomal changes in fishes.

PubMed

Molina, Wagner F; Martinez, Pablo A; Bertollo, Luiz A C; Bidau, Claudio J

2014-12-01

Mechanisms of accumulation based on typical centromeric drive or of chromosomes carrying pericentric inversions are adjusted to the general karyotype differentiation in the principal Actinopterygii orders. Here, we show that meiotic drive in fish is also supported by preferential establishment of sex chromosome systems and B chromosomes in orders with predominantly bi-brachial chromosomes. The mosaic of trends acting at an infra-familiar level in fish could be explained as the interaction of the directional process of meiotic drive as background, modulated on a smaller scale by adaptive factors or specific karyotypic properties of each group, as proposed for the orthoselection model.

Preferential accumulation of sex and Bs chromosomes in biarmed karyotypes by meiotic drive and rates of chromosomal changes in fishes.

PubMed

Molina, Wagner F; Martinez, Pablo A; Bertollo, Luiz A C; Bidau, Claudio J

2014-11-14

Mechanisms of accumulation based on typical centromeric drive or of chromosomes carrying pericentric inversions are adjusted to the general karyotype differentiation in the principal Actinopterygii orders. Here, we show that meiotic drive in fish is also supported by preferential establishment of sex chromosome systems and B chromosomes in orders with predominantly bi-brachial chromosomes. The mosaic of trends acting at an infra-familiar level in fish could be explained as the interaction of the directional process of meiotic drive as background, modulated on a smaller scale by adaptive factors or specific karyotypic properties of each group, as proposed for the orthoselection model.

Teaching Astronomy Through Art: Under Southern Skies -- Aboriginal and Western Scientific Perspectives of the Australian Night Sky

NASA Astrophysics Data System (ADS)

Majewski, S. R.; Boles, M. S.; Patterson, R. J.

1999-12-01

We have created an exhibit, Under Southern Skies -- Aboriginal and Western Scientific Perspectives of the Australian Night Sky, which has shown since June, 1999 in newly refurbished exhibit space at the Leander McCormick Observatory. The University of Virginia has a long and continuing tradition of astrometry starting with early parallax work at the McCormick Observatory, extending to our own NSF CAREER Award-funded projects, and including a long-term, ongoing southern parallax program at Mt. Stromlo and Siding Springs Observatories in Australia. Recently, through a gift of Mr. John Kluge, the University of Virginia has obtained one of the most extensive collections of Australian Aboriginal art outside of Australia. The goal of our exhibit is to unite the University's scientific, artistic and cultural connections to Australia through an exhibit focusing on different perspectives of the Australian night sky. We have brought together Australian Aboriginal bark and canvas paintings that feature astronomical themes, e.g., Milky Way, Moon, Magellanic Cloud and Seven Sisters Dreamings, from the Kluge-Ruhe and private collections. These paintings, from the Central Desert and Arnhem Land regions of Australia, are intermingled with modern, large format, color astronomical images of the same scenes. Descriptive panels and a small gallery guide explain the cultural, artistic and scientific aspects of the various thematic groupings based on particular southern hemisphere night sky objects and associated Aboriginal traditions and stories. This unusual combination of art and science not only provides a unique avenue for educating the public about both astronomy and Australian Aboriginal culture, but highlights mankind's ancient and continuing connection to the night sky. We appreciate funding from NSF CAREER Award #AST-9702521, a Cottrell Scholar Award from The Research Corporation, and the Dept. of Astronomy and Ruhe-Kluge Collection at the University of Virginia.

Optical Sky Brightness and Transparency during the Winter Season at Dome A Antarctica from the Gattini-All-Sky Camera

NASA Astrophysics Data System (ADS)

Yang, Yi; Moore, Anna M.; Krisciunas, Kevin; Wang, Lifan; Ashley, Michael C. B.; Fu, Jianning; Brown, Peter J.; Cui, Xiangqun; Feng, Long-Long; Gong, Xuefei; Hu, Zhongwen; Lawrence, Jon S.; Luong-Van, Daniel; Riddle, Reed L.; Shang, Zhaohui; Sims, Geoff; Storey, John W. V.; Suntzeff, Nicholas B.; Tothill, Nick; Travouillon, Tony; Yang, Huigen; Yang, Ji; Zhou, Xu; Zhu, Zhenxi

2017-07-01

The summit of the Antarctic plateau, Dome A, is proving to be an excellent site for optical, near-infrared, and terahertz astronomical observations. Gattini is a wide-field camera installed on the PLATO instrument module as part of the Chinese-led traverse to Dome A in 2009 January. We present here the measurements of sky brightness with the Gattini ultra-large field of view (90^\\circ × 90^\\circ ) in the photometric B-, V-, and R-bands; cloud cover statistics measured during the 2009 winter season; and an estimate of the sky transparency. A cumulative probability distribution indicates that the darkest 10% of the nights at Dome A have sky brightness of S B = 22.98, S V = 21.86, and S R = 21.68 mag arcsec-2. These values were obtained during the year 2009 with minimum aurora, and they are comparable to the faintest sky brightness at Maunakea and the best sites of northern Chile. Since every filter includes strong auroral lines that effectively contaminate the sky brightness measurements, for instruments working around the auroral lines, either with custom filters or with high spectral resolution instruments, these values could be easily obtained on a more routine basis. In addition, we present example light curves for bright targets to emphasize the unprecedented observational window function available from this ground-based site. These light curves will be published in a future paper.

Blue Skies, Coffee Creamer, and Rayleigh Scattering

ERIC Educational Resources Information Center

Liebl, Michael

2010-01-01

The first physical explanation of Earths blue sky was fashioned in 1871 by Lord Rayleigh. Many discussions of Rayleigh scattering and approaches to studying it both in and out of the classroom are available. Rayleigh scattering accounts for the blue color of the sky and the orange/red color of the Sun near sunset and sunrise, and a number of…

The NASA SETI sky survey: Recent developments

NASA Technical Reports Server (NTRS)

Klein, M. J.; Gulkis, S.; Olsen, E. T.; Renzetti, N. A.

1989-01-01

NASA's Search for Extraterrestrial Intelligence (SETI) project utilizes two complementary search strategies: a sky survey and a targeted search. The SETI team at the Jet Propulsion Laboratory (JPL) in Pasadena, California, has primary responsibility to develop and carry out the sky survey part. Described here is progress that has been made developing the major elements of the survey including a 2-million channel wideband spectrum analyzer system that is being designed and constructed by JPL for the Deep Space Network (DSN). The system will be a multiuser instrument; it will serve as a prototype for the SETI sky survey processor. This prototype system will be used to test the signal detection and observational strategies on DSN antennas in the near future.

The NASA SETI sky survey - Recent developments

NASA Technical Reports Server (NTRS)

Klein, Michael J.; Gulkis, Samuel; Olsen, Edward T.; Renzetti, Nicholas A.

1988-01-01

NASA's Search for Extraterrestrial Intelligence (SETI) project utilizes two complimentary search strategies: a sky survey and a targeted search. The SETI team at the Jet Propulsion Laboratory have primary responsibility to develop and carry out the sky survey part of the Microwave Observing Project. The paper describes progress that has been made to develop the major elements of the survey including a two-million channel wideband spectrum analyzer system that is being developed and constructed by JPL for the Deep Space Network. The new system will be a multiuser instrument that will serve as a prototype for the SETI Sky Survey processor. This system will be used to test the signal detection and observational strategies on deep-space network antennas in the near future.

Fermi Sees the Gamma Ray Sky

NASA Image and Video Library

2009-10-30

This view of the gamma-ray sky constructed from one year of Fermi LAT observations is the best view of the extreme universe to date. The map shows the rate at which the LAT detects gamma rays with energies above 300 million electron volts -- about 120 million times the energy of visible light -- from different sky directions. Brighter colors equal higher rates. Credit: NASA/DOE/Fermi LAT Collaboration Full story: www.nasa.gov/mission_pages/GLAST/news/first_year.html

Systematic measurements of the night sky brightness at 26 locations in Eastern Austria

NASA Astrophysics Data System (ADS)

Posch, Thomas; Binder, Franz; Puschnig, Johannes

2018-05-01

We present an analysis of the zenithal night sky brightness (henceforth: NSB) measurements at 26 locations in Eastern Austria focussing on the years 2015-2016, both during clear and cloudy to overcast nights. All measurements have been performed with 'Sky Quality Meters' (SQMs). For some of the locations, simultaneous aerosol content measurements are available, such that we were able to find a correlation between light pollution and air pollution at those stations. For all locations, we examined the circalunar periodicity of the NSB, seasonal variations as well as long-term trends in the recorded light pollution. The latter task proved difficult, however, due to varying meteorological conditions, potential detector 'aging' and other effects. For several remote locations, a darkening of the overcast night sky by up to 1 magnitude is recorded - indicating a very low level of light pollution -, while for the majority of the examined locations, a brightening of the night sky by up to a factor of 15 occurs due to clouds. We present suitable ways to plot and analyze huge long-term NSB datasets, such as mean-NSB histograms, circalunar, annual ('hourglass') and cumulative ('jellyfish') plots. We show that five of the examined locations reach sufficiently low levels of light pollution - with NSB values down to 21.8 magSQM/arcsec2 - as to allow the establishment of dark sky reserves, even to the point of reaching the 'gold tier' defined by the International Dark Sky Association. Based on the 'hourglass' plots, we find a strong circalunar periodicity of the NSB in small towns and villages ( < 5.000 inhabitants), with amplitudes of up to 5 magnitudes. Using the 'jellyfish' plots, on the other hand, we demonstrate that the examined city skies brighten by up to 3 magnitudes under cloudy conditions, which strongly dominate in those cumulative data representations. Nocturnal gradients of the NSB of 0.0-0.14 magSQM/arcsec2/h are found. The long-term development of the night sky

Sky online: linking amateur and professional astronomers on the world wide web

NASA Astrophysics Data System (ADS)

Fienberg, Richard Tresch

SKY Online is the World Wide Web site of Sky Publishing Corporation, publisher of Sky & Telescope magazine. Conceived mainly as an electronic extension of the company's marketing and promotion efforts, SKY Online has also proven to be a useful tool for communication between amateur and professional astronomers.

Assessment of chromosomal abnormalities in sperm of infertile men using sperm karyotyping and multicolour fluorescence in situ hybridization (FISH)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moosani, N.; Martin, R.H.

1994-09-01

Individuals with male factor infertility resulting from idiopathic oligo-, astheno- or teratozoospermia are frequently offered IVF in an attempt to increase their chances of having a child. A concern remains whether these infertile males have an elevated risk of transmitting chromosomal abnormalities to their offspring. Sperm chromosomal complements from these men were assayed using the human sperm/hamster oocyte fusion system and fluorescence in situ hybridization (FISH) on sperm nuclei. For each of 5 infertile patients, 100 sperm karyotypes were analyzed and multicolour FISH analysis was performed on a minimum of 10,000 sperm nuclei for each chromosome-specific DNA probe for chromosomesmore » 1 (pUC1.77), 12 (D12Z3), X (XC) and Y (DYZ3). As a group, the infertile patients showed increased frequencies of both numerical ({chi}{sup 2}=17.26, {proportional_to} <0.001) and total abnormalities ({chi}{sup 2}=7.78, {proportional_to} <0.01) relative to control donors when assessed by sperm karyotypes. Analysis of sperm nuclei by FISH indicated a significant increase in the frequency of disomy for chromosome 1 in three of the five patients as compared to control donors ({chi}{sup 2}>8.35, {proportional_to} <0.005). In addition, the frequency of XY disomy was significantly higher in four of the five patients studied by FISH ({chi}{sup 2}>10.58, {proportional_to}<0.005), suggesting that mis-segregation caused by the failure of the XY bivalent to pair may play a role in idiopathic male infertility.« less

The Sky This Week, 2016 March 1 - 8 - Naval Oceanography Portal

Science.gov Websites

submit many observations from different locations throughout the year. This is a great time to start are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2016 March 1 - 8 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky

The night sky brightness at McDonald Observatory

NASA Technical Reports Server (NTRS)

Kalinowski, J. K.; Roosen, R. G.; Brandt, J. C.

1975-01-01

Baseline observations of the night sky brightness in B and V are presented for McDonald Observatory. In agreement with earlier work by Elvey and Rudnick (1937) and Elvey (1943), significant night-to-night and same-night variations in sky brightness are found. Possible causes for these variations are discussed. The largest variation in sky brightness found during a single night is approximately a factor of two, a value which corresponds to a factor-of-four variation in airglow brightness. The data are used to comment on the accuracy of previously published surface photometry of M 81.

Extended Source/Galaxy All Sky 2

NASA Image and Video Library

2003-03-27

This panoramic view encompasses the entire sky and reveals the distribution of galaxies beyond the Milky Way galaxy, which astronomers call extended sources, as observed by Two Micron All-Sky Survey. The image is assembled from a database of over 1.6 million galaxies listed in the survey’s All-Sky Survey Extended Source Catalog; more than half of the galaxies have never before been catalogued. The colors represent how the many galaxies appear at three distinct wavelengths of infrared light (blue at 1.2 microns, green at 1.6 microns, and red at 2.2 microns). Quite evident are the many galactic clusters and superclusters, as well as some streamers composing the large-scale structure of the nearby universe. The blue overlay represents the very close and bright stars from our own Milky Way galaxy. In this projection, the bluish Milky Way lies predominantly toward the upper middle and edges of the image. http://photojournal.jpl.nasa.gov/catalog/PIA04251

Big Sky and Greenhorn Elemental Comparison

NASA Image and Video Library

2015-12-17

NASA's Curiosity Mars rover examined both the "Greenhorn" and "Big Sky" targets with the rover's Alpha Particle X-ray Spectrometer (APXS) instrument. Greenhorn is located within an altered fracture zone and has an elevated concentration of silica (about 60 percent by weight). Big Sky is the unaltered counterpart for comparison. The bar plot on the left shows scaled concentrations as analyzed by Curiosity's APXS. The bar plot on the right shows what the Big Sky composition would look like if silica (SiO2) and calcium-sulfate (both abumdant in Greenhorn) were added. The similarity in the resulting composition suggests that much of the chemistry of Greenhorn could be explained by the addition of silica. Ongoing research aims to distinguish between that possible explanation for silicon enrichment and an alternative of silicon being left behind when some other elements were removed by acid weathering. http://photojournal.jpl.nasa.gov/catalog/PIA20275

Rapid aneuploidy testing (knowing less) versus traditional karyotyping (knowing more) for advanced maternal age: what would be missed, who should decide?

PubMed

Leung, W C; Lau, E T; Lau, W L; Tang, Rebecca; Wong, Shell Fean; Lau, T K; Tse, K T; Wong, S F; To, W K; Ng, Lucy K L; Lao, T T; Tang, Mary H Y

2008-02-01

The application of rapid aneuploidy testing as a stand-alone approach in prenatal diagnosis is much debated. The major criticism of this targeted approach is that it will not detect other chromosomal abnormalities that will be picked up by traditional karyotyping. This study aimed to study the nature of such chromosomal abnormalities and whether parents would choose to terminate affected pregnancies. Retrospective study on a cytogenetic database. Eight public hospitals in Hong Kong. The karyotype results of 19 517 amniotic fluid cultures performed for advanced maternal age (>or=35 years) from 1997 to 2002 were classified according to whether they were detectable by rapid aneuploidy testing. The outcomes of pregnancies with abnormal karyotypes were reviewed from patient records. In all, 333 (1.7%) amniotic fluid cultures yielded abnormal karyotypes; 175 (52.6%) of these were detected by rapid aneuploidy testing, and included trisomy 21 (n=94, 28.2%), trisomy 18 or 13 (n=21, 6.3%), and sex chromosome abnormalities (n=60, 18.0%). The other 158 (47.4%) chromosomal abnormalities were not detectable by rapid aneuploidy testing, of which 63 (18.9%) were regarded to be of potential clinical significance and 95 (28.5%) of no clinical significance. Pregnancy outcomes in 327/333 (98.2%) of these patients were retrieved. In total, 143 (42.9%) of these pregnancies were terminated: 93/94 (98.9%) for trisomy 21, 20/21 (95.2%) for trisomy 18 or 13, 19/60 (31.7%) for sex chromosome abnormalities, and 11/63 (17.5%) for other chromosomal abnormalities with potential clinical significance. There were no terminations in the 95 pregnancies in which karyotyping results were regarded to be of no clinical significance. 'Knowing less' by the rapid aneuploidy stand-alone testing could miss about half of all chromosomal abnormalities detectable by amniocentesis performed for advanced maternal age. Findings from two fifths of the latter were of potential clinical significance, and the parents

Colors of the Sky.

ERIC Educational Resources Information Center

Bohren, Craig F.; Fraser, Alistair B.

1985-01-01

Explains the physical principles which result in various colors of the sky. Topics addressed include: blueness, mystical properties of water vapor, ozone, fluctuation theory of scattering, variation of purity and brightness, and red sunsets and sunrises. (DH)

More Observations in Schools for Promoting Astronomy and Sky Protection

NASA Astrophysics Data System (ADS)

Ros, Rosa M.

2015-03-01

In astronomy it is important to promote observation and the quality of the sky is essential for a good observation impact. It is important that children have a nice memory of their observations in a non-polluted sky. Using students as agents of change it is possible to promote good practice for sky protection in society.

Some non-atlas work at ESO Sky Atlas Laboratory.

NASA Astrophysics Data System (ADS)

Madsen, C.

The ESO Sky Atlas Laboratory (SAL) was set up in 1972 with the aim of producing the ESO Quick Blue Survey and later the joint ESO/SERC Survey of the Southern Sky. With the establishment of a Scientific Group, it became apparent that ESO had additional photographic needs, the fullfilment of which was also entrusted to SAL. Thus, in the course of the years, the "Photographic Section" evolved as a subdivision of the Sky Atlas Laboratory.

Recent Characterization of the Night-Sky Irradiance in the Visible/Near-Infrared Spectral Band

NASA Astrophysics Data System (ADS)

Moore, Carolynn; Wood, Michael; Bender, Edward; Hart, Steve

2018-01-01

The U.S. Army RDECOM CERDEC NVESD has made numerous characterizations of the night sky over the past 45 years. Up until the last four years, the measurement devices were highly detector-limited, which led to low spectral resolution, marginal sensitivity in no-moon conditions, and the need for inferential analysis of the resulting data. In 2014, however, the PhotoResearch Model PR-745 spectro-radiometer established a new state of the art for measurement of the integrated night-sky irradiance over the Visible-to-Near-Infrared (VNIR) spectral band (400-1050nm). This has enabled characterization of no-moon night-sky irradiance with a spectral bandwidth less than 15 nanometers, even when this irradiance is attenuated by heavy clouds or forest canopy. Since 2014, we have conducted a series of night-sky data collections at remote sites across the United States. The resulting data has provided new insights into natural radiance variations, cultural lighting impacts, and the spectrally-varying attenuation caused by cloud cover and forest canopy. Several new metrics have also been developed to provide insight into these newly-found components and temporal variations. The observations, findings and conclusions of the above efforts will be presented, including planned near-term efforts to further characterize the night-sky irradiance in the Visible/Near-Infrared spectral band.

The Sky This Week, 2016 January 12 - 19 - Naval Oceanography Portal

Science.gov Websites

would be very different in that case! The planets are now beginning to span more of the night. Leading are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2016 January 12 - 19 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky

The Sky This Week, 2016 February 16 - 23 - Naval Oceanography Portal

Science.gov Websites

very nice pentagon shape. The southernmost star in the pentagon, Al Nath, is "shared" as the are here: Home › USNO › News, Tours & Events › Sky This Week › The Sky This Week, 2016 February 16 - 23 USNO Logo USNO Navigation Tour Information USNO Scientific Colloquia Sky This Week The Sky

Analytic expressions for the black-sky and white-sky albedos of the cosine lobe model.

PubMed

Goodin, Christopher

2013-05-01

The cosine lobe model is a bidirectional reflectance distribution function (BRDF) that is commonly used in computer graphics to model specular reflections. The model is both simple and physically plausible, but physical quantities such as albedo have not been related to the parameterization of the model. In this paper, analytic expressions for calculating the black-sky and white-sky albedos from the cosine lobe BRDF model with integer exponents will be derived, to the author's knowledge for the first time. These expressions for albedo can be used to place constraints on physics-based simulations of radiative transfer such as high-fidelity ray-tracing simulations.

Automated exploitation of sky polarization imagery.

PubMed

Sadjadi, Firooz A; Chun, Cornell S L

2018-03-10

We propose an automated method for detecting neutral points in the sunlit sky. Until now, detecting these singularities has been done manually. Results are presented that document the application of this method on a limited number of polarimetric images of the sky captured with a camera and rotating polarizer. The results are significant because a method for automatically detecting the neutral points may aid in the determination of the solar position when the sun is obscured and may have applications in meteorology and pollution detection and characterization.

Clear-Sky Narrowband Albedo Datasets Derived from Modis Data

NASA Astrophysics Data System (ADS)

Chen, Y.; Minnis, P.; Sun-Mack, S.; Arduini, R. F.; Hong, G.

2013-12-01

Satellite remote sensing of clouds requires an accurate estimate of the clear-sky radiances for a given scene to detect clouds and aerosols and to retrieve their microphysical properties. Knowing the spatial and angular variability of clear-sky albedo is essential for predicting the clear-sky radiance at solar wavelengths. The Clouds and the Earth's Radiant Energy System (CERES) Project uses the near-infrared (NIR; 1.24, 1.6 or 2.13 μm) and visible (VIS; 0.63 μm) channels available on the Terra and Aqua Moderate Resolution Imaging Spectroradiometers (MODIS) to help identify clouds and retrieve their properties. Generally, clear-sky albedo for a given surface type is determined for conditions when the vegetation is either thriving or dormant and free of snow. The clear-sky albedos are derived using a radiative transfer parameterization of the impact of the atmosphere, including aerosols, on the observed reflectances. This paper presents the method of generating monthly clear-sky overhead albedo maps for both snow-free and snow-covered surfaces of these channels using one year of MODIS (Moderate Resolution Imaging Spectroradiometer) CERES products. Maps of 1.24 and 1.6 μm are being used as the background to help retrieve cloud properties (e.g., effective particle size, optical depth) in CERES cloud retrievals in both snow-free and snow-covered conditions.

Increased nuchal traslucency in normal karyotype fetuses

PubMed Central

De Domenico, Roberta; Faraci, Marianna; Hyseni, Entela; Di Prima, Fosca A. F.; Valenti, Oriana; Monte, Santo; Giorgio, Elsa; Renda, Eliana

2011-01-01

Nuchal traslucency (NT) measurement between 11 and 14 weeks’ gestation is a reliable marker for chromosomal abnormalities, including trisomy 21. However, even if conventional karyotyping is normal, increased NT is a predictive value of adverse pregnancy outcome, because it is associated with several fetal malformations, congenital heart defects, genetic syndromes, intrauterine death and miscarriages; the majority of these structural anomalies are undetectable before birth. The risk is proportional to the nuchal translucency thickness, in fact it statistically increases after measurement reaching 3.5 mm or more. However, when these chromosomally normal fetuses with an enlarged NT survive, even if a detailed ultrasound examination and echocardiography fail to reveal any abnormalities, their uneventful outcome and postnatal developmental delay will be not statistically increased when compared to the general population. These parents should be confidently reassured that the residual chance of structural anomalies and abnormal neurodevelopment may not be higher than in the general population. PMID:22439071

One-point fluctuation analysis of the high-energy neutrino sky

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feyereisen, Michael R.; Ando, Shin'ichiro; Tamborra, Irene, E-mail: m.r.feyereisen@uva.nl, E-mail: tamborra@nbi.ku.dk, E-mail: s.ando@uva.nl

2017-03-01

We perform the first one-point fluctuation analysis of the high-energy neutrino sky. This method reveals itself to be especially suited to contemporary neutrino data, as it allows to study the properties of the astrophysical components of the high-energy flux detected by the IceCube telescope, even with low statistics and in the absence of point source detection. Besides the veto-passing atmospheric foregrounds, we adopt a simple model of the high-energy neutrino background by assuming two main extra-galactic components: star-forming galaxies and blazars. By leveraging multi-wavelength data from Herschel and Fermi , we predict the spectral and anisotropic probability distributions for theirmore » expected neutrino counts in IceCube. We find that star-forming galaxies are likely to remain a diffuse background due to the poor angular resolution of IceCube, and we determine an upper limit on the number of shower events that can reasonably be associated to blazars. We also find that upper limits on the contribution of blazars to the measured flux are unfavourably affected by the skewness of the blazar flux distribution. One-point event clustering and likelihood analyses of the IceCube HESE data suggest that this method has the potential to dramatically improve over more conventional model-based analyses, especially for the next generation of neutrino telescopes.« less

Sex Chromosomes and Karyotype of the (Nearly) Mythical Creature, the Gila Monster, Heloderma suspectum (Squamata: Helodermatidae)

PubMed Central

Pokorná, Martina Johnson; Rovatsos, Michail; Kratochvíl, Lukáš

2014-01-01

A wide variety of sex determination systems exist among squamate reptiles. They can therefore serve as an important model for studies of evolutionary transitions among particular sex determination systems. However, we still have only a limited knowledge of sex determination in certain important lineages of squamates. In this respect, one of the most understudied groups is the family Helodermatidae (Anguimorpha) encompassing the only two venomous species of lizards which are potentially lethal to human beings. We uncovered homomorphic ZZ/ZW sex chromosomes in the Gila monster (Heloderma suspectum) with a highly heterochromatic W chromosome. The sex chromosomes are morphologically similar to the ZZ/ZW sex chromosomes of monitor lizards (Varanidae). If the sex chromosomes of helodermatids and varanids are homologous, female heterogamety may be ancestral for the whole Anguimorpha group. Moreover, we found that the karyotype of the Gila monster consists of 2n = 36 chromosomes (14 larger metacentric chromosomes and 22 acrocentric microchromosomes). 2n = 36 is the widely distributed chromosomal number among squamates. In his pioneering works representing the only previous cytogenetic examination of the family Helodermatidae, Matthey reported the karyotype as 2n = 38 and suggested a different chromosomal morphology for this species. We believe that this was probably erroneously. We also discovered a strong accumulation of telomeric sequences on several pairs of microchromosomes in the Gila monster, which is a trait documented relatively rarely in vertebrates. These new data fill an important gap in our understanding of the sex determination and karyotype evolution of squamates. PMID:25119263

CONCAM's Fuzzy-Logic All-Sky Star Recognition Algorithm

NASA Astrophysics Data System (ADS)

Shamir, L.; Nemiroff, R. J.

2004-05-01

One of the purposes of the global Night Sky Live (NSL) network of fisheye CONtinuous CAMeras (CONCAMs) is to monitor and archive the entire bright night sky, track stellar variability, and search for transients. The high quality of raw CONCAM data allows automation of stellar object recognition, although distortions of the fisheye lens and frequent slight shifts in CONCAM orientations can make even this seemingly simple task formidable. To meet this challenge, a fuzzy logic based algorithm has been developed that transforms (x,y) image coordinates in the CCD frame into fuzzy right ascension and declination coordinates for use in matching with star catalogs. Using a training set of reference stars, the algorithm statically builds the fuzzy logic model. At runtime, the algorithm searches for peaks, and then applies the fuzzy logic model to perform the coordinate transformation before choosing the optimal star catalog match. The present fuzzy-logic algorithm works much better than our first generation, straightforward coordinate transformation formula. Following this essential step, algorithms dealing with the higher level data products can then provide a stream of photometry for a few hundred stellar objects visible in the night sky. Accurate photometry further enables the computation of all-sky maps of skyglow and opacity, as well as a search for uncataloged transients. All information is stored in XML-like tagged ASCII files that are instantly copied to the public domain and available at http://NightSkyLive.net. Currently, the NSL software detects stars and creates all-sky image files from eight different locations around the globe every 3 minutes and 56 seconds.

Sky Brightness During Eclipses: A Compendium from the Literature

DTIC Science & Technology

1974-08-05

86 25. Absolute Values of Luminance of the Terrain and the Sky 88 26. Sky Brightness From Film No. 1 89 27. Sky Brightness From Film No. 2 89 28...these twilight equivalents when dust is present in the r.tmosphere are also difficult. Both involve the passage of light through long path lengths...purposes." Ilford-Selo, HP-3 isopan film with a sensitivity of 800 H & D was used. The measurement of the photographs was performed by means of a

An Effective Method for Modeling Two-dimensional Sky Background of LAMOST

NASA Astrophysics Data System (ADS)

Haerken, Hasitieer; Duan, Fuqing; Zhang, Jiannan; Guo, Ping

2017-06-01

Each CCD of LAMOST accommodates 250 spectra, while about 40 are used to observe sky background during real observations. How to estimate the unknown sky background information hidden in the observed 210 celestial spectra by using the known 40 sky spectra is the problem we solve. In order to model the sky background, usually a pre-observation is performed with all fibers observing sky background. We use the observed 250 skylight spectra as training data, where those observed by the 40 fibers are considered as a base vector set. The Locality-constrained Linear Coding (LLC) technique is utilized to represent the skylight spectra observed by the 210 fibers with the base vector set. We also segment each spectrum into small parts, and establish the local sky background model for each part. Experimental results validate the proposed method, and show the local model is better than the global model.

"Untangling the centimetre-wavelength sky"

NASA Astrophysics Data System (ADS)

Leahy, J. Patrick

2015-08-01

The global SED of the Milky Way reaches a minimum at about 80 GHz. In the decade below this, three emission processes predominate: synchrotron, from cosmic ray leptons spiralling in the Galactic magnetic field; free-free, from ionized gas in nebulae and the diffuse warm ionized medium; and anomalous microwaves (AME), believed to be dipole emission from spinning very small dust grains. Each component provides unique diagnostics: synchroton traces the lepton energy spectrum near 20 GeV and reveals the local and global structure of the Galactic magnetic field, free-free probes ionized gas where the usual H-alpha tracer is obscured, and AME traces a new interstellar component, whose relation to the general dust population can now be explored. In total intensity, accurate separation of these components is a hard problem not yet completely solved, mainly due to the spatial variability of the AME spectrum, which in the Planck 2015 analysis dominates the SED between 20 and 60 GHz. New large-area surveys in the frequency decade below the satellite microwave will, in combination with Planck and WMAP, will provide a far more robust determination of each component.In contrast to the confused situation in total intensity, only synchrotron contributes significant polarization in our band, and WMAP and Planck give a clear view of the polarized synchrotron sky, for the first time effectively free of Faraday rotation and depolarization. New ground-based microwave polarization surveys such as GMIMS, S-PASS, C-BASS, and QUIJOTE, will add much higher sensitivity and also have the high frequency resolution needed to trace the line-of-sight component of the magnetic field via Faraday synthesis. The polarization along the Galactic plane constrains models of the global Galactic magnetic field. Away from the plane, polarization probes the tangling of the field in the Galactic halo and clarifies the structure of the Galactic loops and spurs, which impose a large-scale coherence on the

Maintenance of syntenic groups between Cathartidae and Gallus gallus indicates symplesiomorphic karyotypes in new world vultures

PubMed Central

Tagliarini, Marcella M.; O'Brien, Patricia C.M.; Ferguson-Smith, Malcolm A.; de Oliveira, Edivaldo H.C.

2011-01-01

Similarities between New World and Old World vultures have been interpreted to reflect a close relationship and to suggest the inclusion of both in Accipitridae (Falconiformes). However, deeper analyses indicated that the placement of the New World vultures (cathartids) in this Order is uncertain. Chromosome analysis has shown that cathartids retained a karyotype similar to the putative avian ancestor. In order to verify the occurrence of intrachromosomal rearrangements in cathartids, we hybridized whole chromosome probes of two species (Gallus gallus and Leucopternis albicollis) onto metaphases of Cathartes aura. The results showed that not only were the syntenic groups conserved between Gallus and C. aura, but probably also the general gene order, suggesting that New World vultures share chromosomal symplesiomorphies with most bird lineages. PMID:21637548

Continuous All-Sky Cloud Measurements: Cloud Fraction Analysis Based on a Newly Developed Instrument

NASA Astrophysics Data System (ADS)

Aebi, C.; Groebner, J.; Kaempfer, N.; Vuilleumier, L.

2017-12-01

Clouds play an important role in the climate system and are also a crucial parameter for the Earth's surface energy budget. Ground-based measurements of clouds provide data in a high temporal resolution in order to quantify its influence on radiation. The newly developed all-sky cloud camera at PMOD/WRC in Davos (Switzerland), the infrared cloud camera (IRCCAM), is a microbolometer sensitive in the 8 - 14 μm wavelength range. To get all-sky information the camera is located on top of a frame looking downward on a spherical gold-plated mirror. The IRCCAM has been measuring continuously (day and nighttime) with a time resolution of one minute in Davos since September 2015. To assess the performance of the IRCCAM, two different visible all-sky cameras (Mobotix Q24M and Schreder VIS-J1006), which can only operate during daytime, are installed in Davos. All three camera systems have different software for calculating fractional cloud coverage from images. Our study analyzes mainly the fractional cloud coverage of the IRCCAM and compares it with the fractional cloud coverage calculated from the two visible cameras. Preliminary results of the measurement accuracy of the IRCCAM compared to the visible camera indicate that 78 % of the data are within ± 1 octa and even 93 % within ± 2 octas. An uncertainty of 1-2 octas corresponds to the measurement uncertainty of human observers. Therefore, the IRCCAM shows similar performance in detection of cloud coverage as the visible cameras and the human observers, with the advantage that continuous measurements with high temporal resolution are possible.

Prognostic Validation of SKY92 and Its Combination With ISS in an Independent Cohort of Patients With Multiple Myeloma.

PubMed

van Beers, Erik H; van Vliet, Martin H; Kuiper, Rowan; de Best, Leonie; Anderson, Kenneth C; Chari, Ajai; Jagannath, Sundar; Jakubowiak, Andrzej; Kumar, Shaji K; Levy, Joan B; Auclair, Daniel; Lonial, Sagar; Reece, Donna; Richardson, Paul; Siegel, David S; Stewart, A Keith; Trudel, Suzanne; Vij, Ravi; Zimmerman, Todd M; Fonseca, Rafael

2017-09-01

High risk and low risk multiple myeloma patients follow a very different clinical course as reflected in their PFS and OS. To be clinically useful, methodologies used to identify high and low risk disease must be validated in representative independent clinical data and available so that patients can be managed appropriately. A recent analysis has indicated that SKY92 combined with the International Staging System (ISS) identifies patients with different risk disease with high sensitivity. Here we computed the performance of eight gene expression based classifiers SKY92, UAMS70, UAMS80, IFM15, Proliferation Index, Centrosome Index, Cancer Testis Antigen and HM19 as well as the combination of SKY92/ISS in an independent cohort of 91 newly diagnosed MM patients. The classifiers identified between 9%-21% of patients as high risk, with hazard ratios (HRs) between 1.9 and 8.2. Among the eight signatures, SKY92 identified the largest proportion of patients (21%) also with the highest HR (8.2). Our analysis also validated the combination SKY92/ISS for identification of three classes; low risk (42%), intermediate risk (37%) and high risk (21%). Between low risk and high risk classes the HR is >10. Copyright © 2017 Elsevier Inc. All rights reserved.

46 XX karyotype during male fertility evaluation; case series and literature review

PubMed Central

Majzoub, Ahmad; Arafa, Mohamed; Starks, Christopher; Elbardisi, Haitham; Al Said, Sami; Sabanegh, Edmund

2017-01-01

Forty-six XX disorder of sex development is an uncommon medical condition observed at times during the evaluation of a man's fertility. The following is a case series and literature review of phenotypically normal men diagnosed with this karyotype. Our goal is to comprehend the patients’ clinical presentation as well as their laboratory results aiming to explore options available for their management. A formal literature review through PubMed and MEDLINE databases was performed using “46 XX man” as a word search. A total of 55 patients, including those conveyed in this article were diagnosed with a 46 XX karyotype during their fertility evaluation. The patients’ mean age ± s.d. was 34 ± 10 years and their mean height ± s.d. was 166 ± 6.5 cm. Overall, they presented with hypergonadotropic hypogonadism. Sexual dysfunction, reduced hair distribution, and gynecomastia were reported in 20% (4/20), 25.8% (8/31), and 42% (13/31) of the patients, respectively. The SRY gene was detected in 36 (83.7%) and was absent in the remaining seven (16.3%) patients. We found that a multidisciplinary approach to management is preferred in 46 XX patients. Screening for remnants of the mullerian ducts and for malignant transformation in dysgenetic gonads is imperative. Hypogonadism should be addressed, while fertility options are in vitro fertilization with donor sperm or adoption. PMID:27297128

46 XX karyotype during male fertility evaluation; case series and literature review.

PubMed

Majzoub, Ahmad; Arafa, Mohamed; Starks, Christopher; Elbardisi, Haitham; Al Said, Sami; Sabanegh, Edmund

2017-01-01

Forty-six XX disorder of sex development is an uncommon medical condition observed at times during the evaluation of a man's fertility. The following is a case series and literature review of phenotypically normal men diagnosed with this karyotype. Our goal is to comprehend the patients' clinical presentation as well as their laboratory results aiming to explore options available for their management. A formal literature review through PubMed and MEDLINE databases was performed using "46 XX man" as a word search. A total of 55 patients, including those conveyed in this article were diagnosed with a 46 XX karyotype during their fertility evaluation. The patients' mean age ± s.d. was 34 ± 10 years and their mean height ± s.d. was 166 ± 6.5 cm. Overall, they presented with hypergonadotropic hypogonadism. Sexual dysfunction, reduced hair distribution, and gynecomastia were reported in 20% (4/20), 25.8% (8/31), and 42% (13/31) of the patients, respectively. The SRY gene was detected in 36 (83.7%) and was absent in the remaining seven (16.3%) patients. We found that a multidisciplinary approach to management is preferred in 46 XX patients. Screening for remnants of the mullerian ducts and for malignant transformation in dysgenetic gonads is imperative. Hypogonadism should be addressed, while fertility options are in vitro fertilization with donor sperm or adoption.

Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera

USGS Publications Warehouse

Schneeweiss, G.M.; Palomeque, T.; Colwell, A.E.; Weiss-Schneeweiss, H.

2004-01-01

Chromosome numbers and karyotypes of species of Orobanche, Cistanche, and Diphelypaea (Orobanchaceae) were investigated, and 108 chromosome counts of 53 taxa, 19 counted for the first time, are presented with a thorough compilation of previously published data. Additionally, karyotypes of representatives of these genera, including Orobanche sects. Orobanche and Trionychon, are reported. Cistanche (x = 20) has large meta- to submetacentric chromosomes, while those of Diphelypaea (x = 19) are medium-sized submeta-to acrocentrics. Within three analyzed sections of Orobanche, sects. Myzorrhiza (x = 24) and Trionychon (x = 12) possess medium-sized submeta- to acrocentrics, while sect. Orobanche (x = 19) has small, mostly meta- to submetacentric, chromosomes. Polyploidy is unevenly distributed in Orobanche and restricted to a few lineages, e.g., O. sect. Myzorrhiza or Orobanche gracilis and its relatives (sect. Orobanche). The distribution of basic chromosome numbers supports the groups found by molecular phylogenetic analyses: Cistanche has x = 20, the Orobanche-group (Orobanche sect. Orobanche, Diphelypaea) has x = 19, and the Phelipanche-group (Orobanche sects. Gymnocaulis, Myzorrhiza, Trionychon) has x = 12, 24. A model of chromosome number evolution in Orobanche and related genera is presented: from two ancestral base numbers, xh = 5 and xh = 6, independent polyploidizations led to x = 20 (Cistanche) and (after dysploidization) x = 19 (Orobanche-group) and to x = 12 and x = 24 (Phelipanche-group), respectively.

The Citizen Sky Planetarium Trailer

NASA Astrophysics Data System (ADS)

Turner, Rebecca; Price, A.; Wyatt, R.

2011-05-01

Citizen Sky is a multi-year, citizen science project focusing on the bright variable star, epsilon Aurigae. We have developed a six-minute video presentation describing eclipsing binary stars, light curves, and the Citizen Sky project. Designed like a short movie trailer, the video can be shown at planetariums before their regular, feature shows or integrated into a longer presentation. The trailer is available in a wide range of formats for viewing on laptops all the way up to state-of-the-art planetariums. The show is narrated by Timothy Ferris and was produced by the Morrison Planetarium and Visualization Studio at the California Academy of Sciences. This project has been made possible by the National Science Foundation.

The ADS All Sky Survey: footprints of astronomy literature, in the sky

NASA Astrophysics Data System (ADS)

Pepe, Alberto; Goodman, A. A.; Muench, A. A.; Seamless Astronomy Group at the CfA

2014-01-01

The ADS All-Sky Survey (ADSASS) aims to transform the NASA Astrophysics Data System (ADS), widely known for its unrivaled value as a literature resource for astronomers, into a data resource. The ADS is not a data repository per se, but it implicitly contains valuable holdings of astronomical data, in the form of images, tables and object references contained within articles. The objective of the ADSASS effort is to extract these data and make them discoverable and available through existing data viewers. In this talk, the ADSASS viewer - http://adsass.org/ - will be presented: a sky heatmap of astronomy articles based on the celestial objects they reference. The ADSASS viewer is as an innovative research and visual search tool for it allows users to explore astronomical literature based on celestial location, rather than keyword string. The ADSASS is a NASA-funded initiative carried out by the Seamless Astronomy Group at the Harvard-Smithsonian Center for Astrophysics.

NIXNOX project: Sites in Spain where citizens can enjoy dark starry skies

NASA Astrophysics Data System (ADS)

Zamorano, J.; de Miguel, A. Sánchez; Alfaro, E.; Martínez-Delgado, D.; Ocaña, F.; Castaño, J. Gómez; Nievas, M.

2015-03-01

The NIXNOX project, sponsored by the Spanish Astronomical Society, is a Pro-Am collaboration with the aim of finding sites with dark skies. All sky data of the night sky brightness is being obtained by amateur astronomers with Sky Quality Meter (SQM) photometers. We are not looking for remote locations because the places should be easily accessible by people with children. Our goal is to motivate citizens to observe the night sky. NIXNOX will provide information to answer the question: where can I go to observe the stars with my family?

Female-to-male transsexual with 47,XXX karyotype.

PubMed

Turan, M T; Eşel, E; Dündar, M; Candemir, Z; Baştürk, M; Sofuoğlu, S; Ozkul, Y

2000-12-01

There are few reports describing chromosomal abnormalities in transsexuals. In rare cases, transsexualism and sexual chromosomal multiplicity coexist. Six cases of male-to-female transsexuals with 47,XYY chromosomal pattern have been previously reported. We have not encountered any female transsexual cases with 47,XXX karyotype in the literature. A 21-year-old female patient came to our outpatient department with depressive symptoms and suicidal thoughts. On psychiatric interview, she reported that she had feelings of discomfort with her gender identity and had desired to be male since her childhood. Then, we performed cytogenetic investigation using blood culture and G chromosome banding. Histology and DNA histograms of the patient revealed a chromosomal pattern of 47,XXX. We conclude that sexual chromosomal abnormalities in some transsexuals may cause a vulnerability to development of a gender identity disorder.

Association of the type of 5q loss with complex karyotype, clonal evolution, TP53 mutation status, and prognosis in acute myeloid leukemia and myelodysplastic syndrome.

PubMed

Volkert, Sarah; Kohlmann, Alexander; Schnittger, Susanne; Kern, Wolfgang; Haferlach, Torsten; Haferlach, Claudia

2014-05-01

We analyzed 1,200 patients with acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS) harboring a 5q deletion in order to clarify whether the type of 5q loss is associated with other biological markers and prognosis. We investigated all patients by chromosome banding analysis, FISH with a probe for EGR1 (5q31) and, if necessary, to resolve complex karyotypes with 24-color-FISH. Moreover, 420 patients were analyzed for mutations in the TP53 gene. The patient cohort was subdivided based on type of 5q loss: Patients with interstitial deletions and patients with 5q loss due to unbalanced rearrangements or monosomy 5. Loss of the long arm of chromosome 5 due to an unbalanced rearrangement occurred more often in AML (286/627; 45.6%) than MDS (188/573; 32.8%; P < 0.001). In both entities, patients with 5q loss due to unbalanced translocations showed complex karyotypes more frequently (MDS: 179/188; 95.2% vs. 124/385; 32.2%; P < 0.001; AML: 274/286; 95.8% vs. 256/341; 75.1%; P < 0.001). Moreover, in MDS unbalanced 5q translocations were associated with clonal evolution (109/188; 58.0% vs. 124/385; 32.2%; P < 0.001), mutation of TP53 (64/67; 95.5% vs. 40/120; 40.0%; P < 0.001), and shorter survival (15.3 months vs. not reached; P < 0.001). In MDS, complex karyotype was an independent adverse prognostic factor (HR = 5.34; P = 0.032), whereas in AML presence of TP53 mutations was the strongest adverse prognostic factor (HR = 2.21; P = 0.026). In conclusion, in AML and MDS, loss of the long arm of chromosome 5 due to unbalanced translocations is associated with complex karyotype and in MDS, moreover, with clonal evolution, mutations in the TP53 gene and adverse prognosis. Copyright © 2014 Wiley Periodicals, Inc.

Strategy for the IRAS all-sky survey

NASA Technical Reports Server (NTRS)

Lundy, S. A.

1984-01-01

IRAS (the Infrared Astronomical Satellite) was launched on January 25, 1983 (January 26 GMT) with the primary purpose of performing an infrared survey of the entire celestial sphere. To ensure completeness and reliability, every point of sky was to be covered by a minimum of four separate scans of the telescope field-of-view, and as much as possible with six, with certain added timing constraints on the elapsed interval between scans. These strong requirements for sky coverage, combined with a restricted, rotating viewing-window, made extensive planning for the survey strategy, both pre-launch and during operations, a necessity. The result was that on November 21 (November 22 GMT), when the liquid helium required for cooling was depleted, 96 percent of the sky was covered to the minimum depth of four and 71 percent was coverd to depth six or more.

Super-sample covariance approximations and partial sky coverage

NASA Astrophysics Data System (ADS)

Lacasa, Fabien; Lima, Marcos; Aguena, Michel

2018-04-01

Super-sample covariance (SSC) is the dominant source of statistical error on large scale structure (LSS) observables for both current and future galaxy surveys. In this work, we concentrate on the SSC of cluster counts, also known as sample variance, which is particularly useful for the self-calibration of the cluster observable-mass relation; our approach can similarly be applied to other observables, such as galaxy clustering and lensing shear. We first examined the accuracy of two analytical approximations proposed in the literature for the flat sky limit, finding that they are accurate at the 15% and 30-35% level, respectively, for covariances of counts in the same redshift bin. We then developed a harmonic expansion formalism that allows for the prediction of SSC in an arbitrary survey mask geometry, such as large sky areas of current and future surveys. We show analytically and numerically that this formalism recovers the full sky and flat sky limits present in the literature. We then present an efficient numerical implementation of the formalism, which allows fast and easy runs of covariance predictions when the survey mask is modified. We applied our method to a mask that is broadly similar to the Dark Energy Survey footprint, finding a non-negligible negative cross-z covariance, i.e. redshift bins are anti-correlated. We also examined the case of data removal from holes due to, for example bright stars, quality cuts, or systematic removals, and find that this does not have noticeable effects on the structure of the SSC matrix, only rescaling its amplitude by the effective survey area. These advances enable analytical covariances of LSS observables to be computed for current and future galaxy surveys, which cover large areas of the sky where the flat sky approximation fails.

AmeriFlux US-SO4 Sky Oaks- New Stand

DOE Data Explorer

Oechel, Walt [San Diego State University

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-SO4 Sky Oaks- New Stand. Site Description - The Sky Oaks New site is located near the Sky Oaks Field station, owned and operated by San Diego State University. Chaparral vegetation, associated with a Mediterranean climate, covers nearly half of the rough and rocky terrain. Precipitation is almost exclusively confined to the winter months. During the summer and early fall, hot and dry Santa Ana winds from the northeast bring desert heat to the site. A high intensity natural wildfire occurred in approximately 1905. Physical characteristics prior to the 1905 burn are unknown, including stand age and canopy height. Currently, the Sky Oaks New site is an excellent representation of an old-growth chaparral ecosystem, with a canopy height of 2.3 m and chamise-dominated overstory.

An All Sky Instantaneous Shortwave Solar Radiation Model for Mountainous Terrain

NASA Astrophysics Data System (ADS)

Zhang, S.; Li, X.; She, J.

2017-12-01

In mountainous terrain, solar radiation shows high heterogeneity in space and time because of strong terrain shading effects and significant variability of cloud cover. While existing GIS-based solar radiation models simulate terrain shading effects with relatively high accuracy and models based on satellite datasets consider fine scale cloud attenuation processes, none of these models have considered the geometrical relationships between sun, cloud, and terrain, which are important over mountainous terrain. In this research we propose sky cloud maps to represent cloud distribution in a hemispherical sky using MODIS cloud products. By overlaying skyshed (visible area in the hemispherical sky derived from DEM), sky map, and sky cloud maps, we are able to consider both terrain shading effects and anisotropic cloud attenuation in modeling instantaneous direct and diffuse solar radiation in mountainous terrain. The model is evaluated with field observations from three automatic weather stations in the Tizinafu watershed in the Kunlun Mountains of northwestern China. Overall, under all sky conditions, the model overestimates instantaneous global solar radiation with a mean absolute relative difference (MARD) of 22%. The model is also evaluated under clear sky (clearness index of more than 0.75) and partly cloudy sky (clearness index between 0.35 and 0.75) conditions with MARDs of 5.98% and 23.65% respectively. The MARD for very cloudy sky (clearness index less than 0.35) is relatively high. But these days occur less than 1% of the time. The model is sensitive to DEM data error, algorithms used in delineating skyshed, and errors in MODIS atmosphere and cloud products. Our model provides a novel approach for solar radiation modeling in mountainous areas.

Extended Source/Galaxy All Sky 1

NASA Image and Video Library

2003-03-27

This panoramic view of the entire sky reveals the distribution of galaxies beyond our Milky Way galaxy, which astronomers call extended sources, as observed by Two Micron All-Sky Survey. The image is constructed from a database of over 1.6 million galaxies listed in the survey's Extended Source Catalog; more than half of the galaxies have never before been catalogued. The image is a representation of the relative brightnesses of these million-plus galaxies, all observed at a wavelength of 2.2 microns. The brightest and nearest galaxies are represented in blue, and the faintest, most distant ones are in red. This color scheme gives insights into the three dimensional large-scale structure of the nearby universe with the brightest, closest clusters and superclusters showing up as the blue and bluish-white features. The dark band in this image shows the area of the sky where our Milky Way galaxy blocks our view of distant objects, which, in this projection, lies predominantly along the edges of the image. http://photojournal.jpl.nasa.gov/catalog/PIA04252

STRUCTURE IN THE ROTATION MEASURE SKY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stil, J. M.; Taylor, A. R.; Sunstrum, C.

2011-01-01

An analysis of structure in rotation measure (RM) across the sky based on the RM catalog of Taylor et al. is presented. Several resolved RM structures are identified with structure in the local interstellar medium, including radio loops I, II, and III, the Gum nebula, and the Orion-Eridanus superbubble. Structure functions (SFs) of RM are presented for selected areas, and maps of SF amplitude and slope across the sky are compared with H{alpha} intensity and diffuse polarized intensity. RM variance on an angular scale of 1{sup 0} is correlated with length of the line of sight through the Galaxy, withmore » a contribution from local structures. The slope of the SFs is less concentrated to the Galactic plane and less correlated with length of the line of sight through the Galaxy, suggesting a more local origin for RM structure on angular scales {approx}10{sup 0}. The RM variance is a factor of {approx}2 higher toward the South Galactic Pole than toward the North Galactic Pole, reflecting a more wide-spread asymmetry between the northern and southern Galactic hemispheres. Depolarization of diffuse Galactic synchrotron emission at latitudes <30{sup 0} can be explained largely by Faraday dispersion related to small-scale variance in RM, but the errors allow a significant contribution from differential Faraday rotation along the line of sight.« less

Aladin Lite: Lightweight sky atlas for browsers

NASA Astrophysics Data System (ADS)

Boch, Thomas

2014-02-01

Aladin Lite is a lightweight version of the Aladin tool, running in the browser and geared towards simple visualization of a sky region. It allows visualization of image surveys (JPEG multi-resolution HEALPix all-sky surveys) and permits superimposing tabular (VOTable) and footprints (STC-S) data. Aladin Lite is powered by HTML5 canvas technology and is easily embeddable on any web page and can also be controlled through a Javacript API.

Data indexing techniques for the EUVE all-sky survey

NASA Technical Reports Server (NTRS)

Lewis, J.; Saba, V.; Dobson, C.

1992-01-01

This poster describes techniques developed for manipulating large full-sky data sets for the Extreme Ultraviolet Explorer project. The authors have adapted the quatrilateralized cubic sphere indexing algorithm to allow us to efficiently store and process several types of large data sets, such as full-sky maps of photon counts, exposure time, and count rates. A variation of this scheme is used to index sparser data such as individual photon events and viewing times for selected areas of the sky, which are eventually used to create EUVE source catalogs.

Characterization of Light at Night Data from Select SkyGlowNet Nodes

NASA Astrophysics Data System (ADS)

Flurchick, K. M.; Deal, S.; Foster, C.

2013-05-01

Internet-enabled sky brightness meters (iSBMs) that continuously record and log sky brightness at the zenith have been installed at the prototype nodes of a network called SkyGlowNet. Also logged are time and weather information. These data are polled at a user-defined frequency, typically about every 45 seconds. Although the SkyGlowNetdata are used for various professional scientific studies, they are also useful for independent student research projects. In this case, the data are uploaded to the SkyGlowNetwebsite, initially to a proprietary area where the data for each institution are embargoed for one or two semesters as students conduct research projects with their data. When released from embargo, the data are moved to another area where they can be accessed by all SkyGlowNet participants. In this paper, we describe a student project in which the data collected at two SkyGlowNet sites are characterized. The data streams are parsed into homogenous segments and statistical tools are employed to describe variations observed in the data values. We demonstrate how to differentiate between natural phenomena and the effects of artificial lighting on the brightness of the night sky. In our poster we show how these effects compare between sites as separate as Arizona and North Carolina. We also have experimented with the development of statistical metrics that are used to help categorize sky brightness on select nights, and can nearly automatically provide a characterization of the quality of the night sky for astronomical purposes.

Accuracy of the hypothetical sky-polarimetric Viking navigation versus sky conditions: revealing solar elevations and cloudinesses favourable for this navigation method.

PubMed

Száz, Dénes; Farkas, Alexandra; Barta, András; Kretzer, Balázs; Blahó, Miklós; Egri, Ádám; Szabó, Gyula; Horváth, Gábor

2017-09-01

According to Thorkild Ramskou's theory proposed in 1967, under overcast and foggy skies, Viking seafarers might have used skylight polarization analysed with special crystals called sunstones to determine the position of the invisible Sun. After finding the occluded Sun with sunstones, its elevation angle had to be measured and its shadow had to be projected onto the horizontal surface of a sun compass. According to Ramskou's theory, these sunstones might have been birefringent calcite or dichroic cordierite or tourmaline crystals working as polarizers. It has frequently been claimed that this method might have been suitable for navigation even in cloudy weather. This hypothesis has been accepted and frequently cited for decades without any experimental support. In this work, we determined the accuracy of this hypothetical sky-polarimetric Viking navigation for 1080 different sky situations characterized by solar elevation θ and cloudiness ρ , the sky polarization patterns of which were measured by full-sky imaging polarimetry. We used the earlier measured uncertainty functions of the navigation steps 1, 2 and 3 for calcite, cordierite and tourmaline sunstone crystals, respectively, and the newly measured uncertainty function of step 4 presented here. As a result, we revealed the meteorological conditions under which Vikings could have used this hypothetical navigation method. We determined the solar elevations at which the navigation uncertainties are minimal at summer solstice and spring equinox for all three sunstone types. On average, calcite sunstone ensures a more accurate sky-polarimetric navigation than tourmaline and cordierite. However, in some special cases (generally at 35° ≤  θ  ≤ 40°, 1 okta ≤  ρ  ≤ 6 oktas for summer solstice, and at 20° ≤  θ  ≤ 25°, 0 okta ≤  ρ  ≤ 4 oktas for spring equinox), the use of tourmaline and cordierite results in smaller navigation uncertainties than that of calcite

Worldwide Impact: International Year of Astronomy Dark Skies Awareness Programs

NASA Astrophysics Data System (ADS)

Walker, C. E.; Pompea, S. M.; Isbell, D.

2009-12-01

The arc of the Milky Way seen from a truly dark location is part of our planet's natural heritage. More than one fifth of the world population, two thirds of the United States population and one half of the European Union population have already lost naked eye visibility of the Milky Way. This loss, caused by light pollution, is a serious and growing issue that impacts astronomical research, the economy, ecology, energy conservation, human health, public safety and our shared ability to see the night sky. For this reason, “Dark Skies Awareness” is a global cornerstone project of the International Year of Astronomy. Its goal is to raise public awareness of the impact of artificial lighting on local environments by getting people worldwide involved in a variety of programs through: - New Technology (website, podcasts, social networking, Second Life) - Educational Materials (Great Switch Out, a traveling exhibit, brochures, posters, CDs, DVDs, educational kit) - The Arts (photo contest) - Events (Earth Hour, International Dark Sky Week, World Night in Defense of Starlight, Dark Skies Discovery Sites, Sidewalk Astronomy, Nights in the Parks) - Citizen Science Programs (5 star hunting programs & Quiet Skies) Dark Skies Communities (Starlight Initiative, International Dark Sky Communities) Many countries around the world have participated in these programs. We will highlight 24 countries in particular and focus on successful techniques used in aspects of the programs, results and impact on the audience, and plans and challenges for maintaining or extending the program beyond the International Year of Astronomy. The International Year of Astronomy 2009 is partially funded from a grant from the National Science Foundation (NSF) Astronomy Division. The National Optical Astronomy Observatory is host to the IYA2009 Dark Skies Awareness programs and is operated by the Association of Universities for Research in Astronomy, Inc. under cooperative agreement with NSF.

X ray observations of late-type stars using the ROSAT all-sky survey

NASA Astrophysics Data System (ADS)

Linsky, Jeffrey L.; Fleming, Thomas A.

1992-03-01

The ROSAT mission made the first x ray survey of the entire sky using an imaging detector. Although ROSAT is a joint NASA/German project and involves direct American participation during its second phase of pointed observations, the all-sky survey remains the sole property of the German investigators. NASA grant represented the first use of ROSAT data analysis funds to support direct American participation in the ROSAT all-sky survey. The project involved a collaborative agreement between the Joint Institute for Laboratory Astrophysics (JILA) and the Max-Planck-Institut fur Extraterrestrische Physik (MPE) where JILA supplied MPE with a post-doctoral research associate with experience in the field of stellar (coronal) x ray emission to work within their ROSAT group. In return, members of the cool star research group at JILA were given the opportunity to collaborate on projects involving ROSAT all-sky survey data. Both sides have benefitted (and still benefit) from this arrangement since MPE suffers from a shortage of researchers who are interested in x ray emission from 'normal' stars and white dwarfs. MPE has also drawn upon experience in optical identification of x ray sources from the Einstein Extended Medium Sensitivity Survey in planning their own identification strategies for the ROSAT all-sky survey. The JILA cool stars group has benefitted since access to all-sky survey data has expanded the scope of their already extensive research programs involving multiwavelength observations of late-type stars. ROSAT was successfully launched on 1 June 1990 and conducted the bulk of the survey from 30 July 1990 to 25 January 1991. Data gaps in the survey have subsequently been made up. At the time of this writing (February 1992), the survey data have been processed once with the Standard Analysis Software System (SASS). A second processing will soon begin with improvements made to the SASS to correct errors and bugs found while carrying out scientific projects with data

X ray observations of late-type stars using the ROSAT all-sky survey

NASA Technical Reports Server (NTRS)

Linsky, Jeffrey L.; Fleming, Thomas A.

1992-01-01

The ROSAT mission made the first x ray survey of the entire sky using an imaging detector. Although ROSAT is a joint NASA/German project and involves direct American participation during its second phase of pointed observations, the all-sky survey remains the sole property of the German investigators. NASA grant represented the first use of ROSAT data analysis funds to support direct American participation in the ROSAT all-sky survey. The project involved a collaborative agreement between the Joint Institute for Laboratory Astrophysics (JILA) and the Max-Planck-Institut fur Extraterrestrische Physik (MPE) where JILA supplied MPE with a post-doctoral research associate with experience in the field of stellar (coronal) x ray emission to work within their ROSAT group. In return, members of the cool star research group at JILA were given the opportunity to collaborate on projects involving ROSAT all-sky survey data. Both sides have benefitted (and still benefit) from this arrangement since MPE suffers from a shortage of researchers who are interested in x ray emission from 'normal' stars and white dwarfs. MPE has also drawn upon experience in optical identification of x ray sources from the Einstein Extended Medium Sensitivity Survey in planning their own identification strategies for the ROSAT all-sky survey. The JILA cool stars group has benefitted since access to all-sky survey data has expanded the scope of their already extensive research programs involving multiwavelength observations of late-type stars. ROSAT was successfully launched on 1 June 1990 and conducted the bulk of the survey from 30 July 1990 to 25 January 1991. Data gaps in the survey have subsequently been made up. At the time of this writing (February 1992), the survey data have been processed once with the Standard Analysis Software System (SASS). A second processing will soon begin with improvements made to the SASS to correct errors and bugs found while carrying out scientific projects with data

An All-Sky Search for Wide Binaries in the SUPERBLINK Proper Motion Catalog

NASA Astrophysics Data System (ADS)

Hartman, Zachary; Lepine, Sebastien

2017-01-01

We present initial results from an all-sky search for Common Proper Motion (CPM) binaries in the SUPERBLINK all-sky proper motion catalog of 2.8 million stars with proper motions greater than 40 mas/yr, which has been recently enhanced with data from the GAIA mission. We initially search the SUPERBLINK catalog for pairs of stars with angular separations up to 1 degree and proper motion difference less than 40 mas/yr. In order to determine which of these pairs are real binaries, we develop a Bayesian analysis to calculate probabilities of true companionship based on a combination of proper motion magnitude, angular separation, and proper motion differences. The analysis reveals that the SUPERBLINK catalog most likely contains ~40,000 genuine common proper motion binaries. We provide initial estimates of the distances and projected physical separations of these wide binaries.

Dark Skies, Bright Kids! Year 5

NASA Astrophysics Data System (ADS)

Prager, Brian; Johnson, K. E.; Barcos-Munoz, L. D.; Beaton, R.; Bittle, L.; Borish, H.; Burkhardt, A.; Corby, J.; Damke, G.; Dean, J.; Dorsey, G.; Graninger, D.; Lauck, T.; Liss, S.; Oza, A.; Peacock, S.; Romero, C.; Sokal, K. R.; Stierwalt, S.; Walker, L.; Wenger, T.; Zucker, C.

2014-01-01

Our public outreach group Dark Skies, Bright Kids! (DSBK) fosters science literacy in Virginia by bringing a hands-on approach to astronomy that engages children's natural excitement and curiosity. We are an entirely volunteer-run group based out of the Department of Astronomy at the University of Virginia and we enthusiastically utilize astronomy as a 'gateway science.' We create long-term relationships with students during an 8 to 10 week long, after-school astronomy club at under served elementary schools in neighboring counties, and we visited 3 different schools in 2013. Additionally, we organize and participate in science events throughout the community. The fifth year of DSBK was marked by surpassing 10,000 contact hours in Spring 2013 Semester and by ringing in the fall semester with our biggest, most successful star party to date. We hosted the Third Annual Central Virginia Star Party, free and open to the community to encourage families to enjoy astronomy together. Nearly four hundred people of all ages attended, double the number from previous years. Joining with local astronomical societies, we offered an enlightening and exciting night with resources rarely accessible to the public, such as an IR camera and a portable planetarium. With numerous telescopes pointed at the sky, and a beautifully clear night with views of the Milky Way, the International Space Station, and numerous meteors, the star party was a fantastic opportunity to introduce many of our guests to the natural wonders of our night sky and enjoy some of the darkest skies on the eastern seaboard.

ESASky: All the sky you need

NASA Astrophysics Data System (ADS)

De Marchi, Guido; ESASky Team

2018-06-01

ESASky is a discovery portal giving to all astronomers, professional and amateur alike, an easy way to access high-quality scientific data from their computer, tablet, or mobile device. It includes over half a million images, 300,000 spectra, and more than a billion catalogue sources. From gamma rays to radio wavelengths, it allows users to explore the cosmos with data from a dozen space missions from the astronomical archives of ESA, NASA, and JAXA and does not require prior knowledge of any particular mission. ESASky features an all-sky exploration interface, letting users easily zoom in for stars as single targets or as part of a whole galaxy, visualise them and retrieve the relevant data taken in an area of the sky with just a few clicks. Users can easily compare observations of the same source obtained by different space missions at different times and wavelengths. They can also use ESASky to plan future observations with the James Webb Space Telescope, comparing the relevant portion of the sky as observed by Hubble and other missions. We will illustrate the many options to visualise and access astronomical data: interactive footprints for each instrument, tree-maps, filters, and solar-system object trajectories can all be combined and displayed. The most recent version of ESASky, released in February, also includes access to scientific publications, allowing users to visualise on the sky all astronomical objects with associated scientific publications and to link directly back to the papers in the NASA Astrophysics Data System.

The Citizen Sky Planetarium Trailer

NASA Astrophysics Data System (ADS)

Turner, R.; Price, A.; Wyatt, R.

2012-06-01

(Abstract only) Citizen Sky is a multi-year, citizen science project focusing on the bright variable star e Aurigae. We have developed a six-minute video presentation describing eclipsing binary stars, light curves, and the Citizen Sky project. Designed like a short movie trailer, the video can be shown at planetariums before their regular, feature shows or integrated into a longer presentation. The trailer is available in a wide range of formats for viewing on laptops all the way up to state-of-the-art planetariums. The show is narrated by Timothy Ferris and was produced by the Morrison Planetarium and Visualization Studio at the California Academy of Sciences. This project has been made possible by the National Science Foundation.

Karyotype and sex chromosome differentiation in two Nalassus species (Coleoptera, Tenebrionidae)

PubMed Central

Şendoğan, Dirim; Alpagut-Keskin, Nurşen

2016-01-01

Abstract Cytogenetic features of Nalassus bozdagus Nabozhenko & Keskin, 2010 and Nalassus plebejus Küster, 1850 were analysed using conventional and differential staining. Mitotic and meiotic chromosomal analysis revealed the diploid number as 2n = 20 (9+Xyp) in both species. Besides the general resemblance of two Nalassus Mulsant, 1854 karyotypes, important differences related to variations in the number of metacentric/submetacentric chromosomes, localization of highly impregnated regions which are considered as NOR and heterochromatin distribution are clearly observed. The most prominent difference between two species is found related to the X chromosome which is clearly larger in Nalassus bozdagus and has a conspicuous secondary constriction on the long arm. As a result of silver staining, the existence of highly impregnated areas associated with Xyp of Nalassus bozdagus in both prophase I and metaphase I, suggests that NORs are seemingly located on sex chromosomes. On the other hand, the potential NORs of Nalassus plebejus were observed only in prophase I nuclei. With the application of fluorescence dye DAPI, the AT rich chromosome regions and Xyp which forms the parachute configuration were shown in both species. PMID:27830047

Mössbauer analysis of the firing process of the sky-green glaze of the imitative ancient Chinese Ru porcelain

NASA Astrophysics Data System (ADS)

Songhua, Chen; Zhengyao, Gao; Guoju, Hu; Xiande, Chen

1994-12-01

The variation of the Mössbauer parameters of the imitative ancient Ru porcelain skygreen glaze with the firing conditions is studied in detail in the present paper. The Mössbauer spectra show that the sky-green glaze contains three kinds of iron minerals, i.e. the structural iron (Fe2+ and Fe3+); Fe2O3 and Fe3O4. The relative intensity of the paramagnetic peak Fe2+ increases and the magnetic ratio of the magnetic peak decreases with increasing temperature. Based on the variation of the quadrupole splitting ( QS) of the paramagnetic peak Fe2+, the phase transformation characteristics of the sky-green glaze in the firing process is discussed. The coloring mechanism of the sky-green glaze and the variation of its magnetism in the firing process are also investigated in the present paper.

Sky Quality Meter measurements in a colour-changing world

NASA Astrophysics Data System (ADS)

Sánchez de Miguel, A.; Aubé, M.; Zamorano, J.; Kocifaj, M.; Roby, J.; Tapia, C.

2017-05-01

The Sky Quality Meter (SQM) has become the most common device used to track the evolution of the brightness of the sky from polluted regions to first-class astronomical observatories. A vast database of SQM measurements already exists for many places in the world. Unfortunately, the SQM operates over a wide spectral band and its spectral response interacts with the sky's spectrum in a complex manner. This is why the optical signals are difficult to interpret when the data are recorded in regions with different sources of artificial light. The brightness of the night sky is linked in a complex way to ground-based light emissions, while taking into account atmospheric-induced optical distortion as well as spectral transformation from the underlying ground surfaces. While the spectral modulation of the sky's radiance has been recognized, it still remains poorly characterized and quantified. The impact of the SQM's spectral characteristics on sky-brightness measurements is analysed here for different light sources, including low- and high-pressure sodium lamps, PC-amber and white LEDs, metal halide and mercury lamps. We show that a routine conversion of radiance to magnitude is difficult, or rather impossible, because the average wavelength depends on actual atmospheric and environment conditions, the spectrum of the source and device-specific properties. We correlate SQM readings with both the Johnson astronomical photometry bands and the human system of visual perception, assuming different lighting technologies. These findings have direct implications for the processing of SQM data and for their improvement and/or remediation.

Alternative Fuels Data Center: Blue Skies Initiative Clears the Air in

Science.gov Websites

North Carolina for More Than a Decade Blue Skies Initiative Clears the Air in North Carolina for More Than a Decade to someone by E-mail Share Alternative Fuels Data Center: Blue Skies Initiative Center: Blue Skies Initiative Clears the Air in North Carolina for More Than a Decade on Twitter Bookmark

Indoor calibration of Sky Quality Meters: Linearity, spectral responsivity and uncertainty analysis

NASA Astrophysics Data System (ADS)

Pravettoni, M.; Strepparava, D.; Cereghetti, N.; Klett, S.; Andretta, M.; Steiger, M.

2016-09-01

The indoor calibration of brightness sensors requires extremely low values of irradiance in the most accurate and reproducible way. In this work the testing equipment of an ISO 17025 accredited laboratory for electrical testing, qualification and type approval of solar photovoltaic modules was modified in order to test the linearity of the instruments from few mW/cm2 down to fractions of nW/cm2, corresponding to levels of simulated brightness from 6 to 19 mag/arcsec2. Sixteen Sky Quality Meter (SQM) produced by Unihedron, a Canadian manufacturer, were tested, also assessing the impact of the ageing of their protective glasses on the calibration coefficients and the drift of the instruments. The instruments are in operation on measurement points and observatories at different sites and altitudes in Southern Switzerland, within the framework of OASI, the Environmental Observatory of Southern Switzerland. The authors present the results of the calibration campaign: linearity; brightness calibration, with and without protective glasses; transmittance measurement of the glasses; and spectral responsivity of the devices. A detailed uncertainty analysis is also provided, according to the ISO 17025 standard.

Introduction to the Arizona Sky Island Arthropod Project (ASAP): Systematics, biogeography, ecology, and population genetics of arthropods of the Madrean Sky Islands

Treesearch

Wendy Moore; Wallace M. Meyer; Jeffrey A. Eble; Kimberly Franklin; John F. Wiens; Richard C. Brusca

2013-01-01

The Arizona Sky Island Arthropod Project (ASAP) is a new multi-disciplinary research program at the University of Arizona that combines systematics, biogeography, ecology, and population genetics to study origins and patterns of arthropod diversity along elevation gradients and among mountain ranges in the Madrean Sky Island Region. Arthropods represent taxonomically...

Anisotropy in the all-sky distribution of galaxy morphological types

NASA Astrophysics Data System (ADS)

Javanmardi, Behnam; Kroupa, Pavel

2017-01-01

We present the first study of the isotropy of the all-sky distribution of morphological types of galaxies in the Local Universe out to around 200 Mpc using more than 60 000 galaxies from the HyperLeda database. We use a hemispherical comparison method where the sky is divided into two opposite hemispheres and the abundance distribution of the morphological types, T, are compared using the Kolmogorov-Smirnov (KS) test. By pointing the axis of symmetry of the hemisphere pairs to different directions in the sky, the KS statistic as a function of sky coordinates is obtained. For three samples of galaxies within around 100, 150, and 200 Mpc, we find a significant hemispherical asymmetry with a vanishingly small chance of occurring in an isotropic distribution. Astonishingly, regardless of this extreme significance, the observed hemispherical asymmetry for the three distance ranges is aligned with the celestial equator at the 97.1-99.8% confidence level and with the ecliptic at 94.6-97.6%, estimated using a Monte Carlo analysis. Shifting T values randomly within their uncertainties has a negligible effect on this result. When a magnitude limit of B ≤ 15 mag is applied to these samples, the galaxies within 100 Mpc show no significant anisotropy after randomization of T. However, the direction of the asymmetry in the samples within 150 and 200 Mpc and the same magnitude limit is found to be within an angular separation of 32 degrees from (l,b) = (123.7,24.6) with a 97.2% and 99.9% confidence level, respectively. This direction is only 2.6 degrees away from the celestial north pole. Unless the Local Universe has a significant anisotropic distribution of galaxy morphologies aligned with the orientation or the orbit of the Earth (which would be a challenge for the Cosmological Principle), our results show that there seems to be a systematic bias in the classification of galaxy morphological types between the data from the northern and the southern equatorial sky. Further

Clear-Sky Probability for the August 21, 2017, Total Solar Eclipse Using the NREL National Solar Radiation Database

DOE Office of Scientific and Technical Information (OSTI.GOV)

Habte, Aron M; Roberts, Billy J; Kutchenreiter, Mark C

The National Renewable Energy Laboratory (NREL) and collaborators have created a clear-sky probability analysis to help guide viewers of the August 21, 2017, total solar eclipse, the first continent-spanning eclipse in nearly 100 years in the United States. Using cloud and solar data from NREL's National Solar Radiation Database (NSRDB), the analysis provides cloudless sky probabilities specific to the date and time of the eclipse. Although this paper is not intended to be an eclipse weather forecast, the detailed maps can help guide eclipse enthusiasts to likely optimal viewing locations. Additionally, high-resolution data are presented for the centerline of themore » path of totality, representing the likelihood for cloudless skies and atmospheric clarity. The NSRDB provides industry, academia, and other stakeholders with high-resolution solar irradiance data to support feasibility analyses for photovoltaic and concentrating solar power generation projects.« less

Maximizing the Performance of Automated Low Cost All-sky Cameras

NASA Technical Reports Server (NTRS)

Bettonvil, F.

2011-01-01

Thanks to the wide spread of digital camera technology in the consumer market, a steady increase in the number of active All-sky camera has be noticed European wide. In this paper I look into the details of such All-sky systems and try to optimize the performance in terms of accuracy of the astrometry, the velocity determination and photometry. Having autonomous operation in mind, suggestions are done for the optimal low cost All-sky camera.

Pi of the Sky observation of GRB160625B

NASA Astrophysics Data System (ADS)

Opiela, Rafał; Batsch, Tadeusz; Castro-Tirado, Alberto Javier; Czyrkowski, Henryk; Ćwiek, Arkadiusz; Ćwiok, Mikołaj; DÄ browski, Ryszard; Jelinek, Martin; Kasprowicz, Grzegorz; Majcher, Ariel; Małek, Katarzyna; Mankiewicz, Lech; Nawrocki, Krzysztof; Obara, Łukasz; Piotrowski, Lech; Siudek, Małgorzata; Sokołowski, Marcin; Wawrzaszek, Roman; Wrochna, Grzegorz; Zaremba, Marcin; Żarnecki, Aleksander Filip

2017-08-01

Pi of the Sky is a system of wide field of view robotic telescopes, which search for short timescale astrophysical phenomena, especially for prompt optical GRB emission. The system was designed for autonomous operation, monitoring a large fraction of the sky to a depth of 12m-13m and with time resolution of the order of 10 seconds. Custom designed CCD cameras are equipped with Canon lenses f = 85 mm, f/d = 1.2 and cover 20° × 20° of the sky each. The final system with 16 cameras on 4 equatorial mounts was completed in 2014 at the INTA El Arenosillo Test Centre in Spain. GRB160625B was an extremely bright GRB with three distinct emission episodes. Cameras of the Pi of the Sky observatory in Spain were not observing the position of the GRB160625B prior to the first emission episode. Observations started only after receiving Fermi/GBM trigger, about 140 seconds prior to the second emission. As the position estimate taken from the Fermi alert and used to position the telescope was not very accurate, the actual position of the burst happened to be in the overlap region of two cameras, resulting in two independent sets of measurements. Light curves from both cameras were reconstructed using the Luiza framework. No object brighter than 12.4m (3σ limit) was observed prior to the second GRB emission. An optical flash was identified on an image starting -5.9s before the time of the Fermi/LAT trigger, brightening to about 8m on the next image and then becoming gradually dimmer, fading below our sensitivity after about 400s. Emission features as measured in different spectral bands indicate that the three emission episodes of GRB160625B were dominated by distinct physics process. Simultaneously observations in gamma-rays and optical wavelengths support the hypothesis that this was the first observed transition from thermal to non-thermal radiation in a single GRB. Main results of the combined analysis are presented.

All Sky Observations with BATSE and GBM

NASA Technical Reports Server (NTRS)

Wilson-Hodge, Colleen A.

2008-01-01

The Burst and Transient Source Experiment (BATSE) on board the Compton Gamma Ray Observatory (CGRO) monitored the entire sky from 1991-2000. I will review highlights of BATSE observations including gamma ray bursts, black hole candidates, accreting pulsars, and active galaxies. On 2008 June 11, the Fermi Gamma Ray Space Telescope was launched. The Gamma ray Burst Monitor (GBM) on board Fermi continues the all-sky monitoring legacy started with BATSE. I will review early results and planned observations with GBM.

Using Virtual Observatory Services in Sky View

NASA Technical Reports Server (NTRS)