EPSPS gene amplification conferring resistance to glyphosate in windmill grass (Chloris truncata) in Australia.

PubMed

Ngo, The D; Malone, Jenna M; Boutsalis, Peter; Gill, Gurjeet; Preston, Christopher

2018-05-01

Five glyphosate-resistant populations of Chloris truncata originally collected from New South Wales were compared with one susceptible (S) population from South Australia to confirm glyphosate resistance and elucidate possible mechanisms of resistance. Based on the amounts of glyphosate required to kill 50% of treated plants (LD 50 ), glyphosate resistance (GR) was confirmed in five populations of C. truncata (A536, A528, T27, A534 and A535.1). GR plants were 2.4-8.7-fold more resistant and accumulated less shikimate after glyphosate treatment than S plants. There was no difference in glyphosate absorption and translocation between GR and S plants. The EPSPS gene did not contain any point mutation that had previously been associated with resistance to glyphosate. The resistant plants (A528 and A536) contained up to 32-48 more copies of the EPSPS gene than the susceptible plants. This study has identified EPSPS gene amplification contributing to glyphosate resistance in C. truncata. In addition, a Glu-91-Ala mutation within EPSPS was identified that may contribute to glyphosate resistance in this species. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Biomarker responses and PAH uptake in Mya truncata following exposure to oil-contaminated sediment in an Arctic fjord (Svalbard).

PubMed

Camus, L; Birkely, S R; Jones, M B; Børseth, J F; Grøsvik, B E; Gulliksen, B; Lønne, O J; Regoli, F; Depledge, M H

2003-06-01

Expanding industrial activity (notably oil and gas exploration) in the Arctic requires assessment of the potential impact of chemicals on marine organisms living in seawater at low temperature. The bivalve Mya truncata is common in Svalbard fjord (Norway) where it experiences low temperature throughout the year. To measure the impact of polycyclic aromatic hydrocarbons (PAH) on M. truncata, the responses of three biomarkers [total oxyradical scavenging capacity-assay (TOSC), plasma membrane stability of haemocytes and respiration rates] were investigated from bivalves exposed to sediment contaminated with a PAH mixture (crude oil). After two weeks of exposure to the contaminated sediment, TOSC showed no change. The high TOSC value (4010+/-1339 unit mg(-1) protein) of Mya truncata (control group) is thought to protect biomolecules with a low turnover rate efficiently in a low food availability environment. In the exposed bivalves, the haemocyte cellular membranes were significantly destabilised compared with controls (P<0.05). Respiration rate of control and PAH-exposed individuals (0.055+/-0.020 mg O(2) dw(-1) h(-1)) was similar and relatively low as is typical for polar bivalves, reflecting a strategy to minimise energy expenditure to cope with 9 months of starvation. Bioaccumulation of PAH by M. truncata was also low, due probably to a combination of low metabolic rate and reduced solubility of the oil compounds at low temperature. Data indicated an uptake of mainly low molecular weight compounds (two and three ring molecules). A good correlation of logBAF(lipid) (bioaccumulation factor) and logK(ow) (octanol/water partitioning coefficient) was shown (r(2)=0.87). Tissue sensitivity and/or functional differences (digestive gland vs. haemocytes), PAH uptake route (dietary vs. gills), the low metabolic rate of M. truncata and the low environmental temperature (reducing the bioavailability of PAH) are factors that help explain these findings.

EEF2 Analysis Challenges the Monophyly of Archaeplastida and Chromalveolata

PubMed Central

Kim, Eunsoo; Graham, Linda E.

2008-01-01

Background Classification of eukaryotes provides a fundamental phylogenetic framework for ecological, medical, and industrial research. In recent years eukaryotes have been classified into six major supergroups: Amoebozoa, Archaeplastida, Chromalveolata, Excavata, Opisthokonta, and Rhizaria. According to this supergroup classification, Archaeplastida and Chromalveolata each arose from a single plastid-generating endosymbiotic event involving a cyanobacterium (Archaeplastida) or red alga (Chromalveolata). Although the plastids within members of the Archaeplastida and Chromalveolata share some features, no nucleocytoplasmic synapomorphies supporting these supergroups are currently known. Methodology/Principal Findings This study was designed to test the validity of the Archaeplastida and Chromalveolata through the analysis of nucleus-encoded eukaryotic translation elongation factor 2 (EEF2) and cytosolic heat-shock protein of 70 kDa (HSP70) sequences generated from the glaucophyte Cyanophora paradoxa, the cryptophytes Goniomonas truncata and Guillardia theta, the katablepharid Leucocryptos marina, the rhizarian Thaumatomonas sp. and the green alga Mesostigma viride. The HSP70 phylogeny was largely unresolved except for certain well-established groups. In contrast, EEF2 phylogeny recovered many well-established eukaryotic groups and, most interestingly, revealed a well-supported clade composed of cryptophytes, katablepharids, haptophytes, rhodophytes, and Viridiplantae (green algae and land plants). This clade is further supported by the presence of a two amino acid signature within EEF2, which appears to have arisen from amino acid replacement before the common origin of these eukaryotic groups. Conclusions/Significance Our EEF2 analysis strongly refutes the monophyly of the Archaeplastida and the Chromalveolata, adding to a growing body of evidence that limits the utility of these supergroups. In view of EEF2 phylogeny and other morphological evidence, we discuss

Cellular stress responses to chronic heat shock and shell damage in temperate Mya truncata.

PubMed

Sleight, Victoria A; Peck, Lloyd S; Dyrynda, Elisabeth A; Smith, Valerie J; Clark, Melody S

2018-05-12

Acclimation, via phenotypic flexibility, is a potential means for a fast response to climate change. Understanding the molecular mechanisms underpinning phenotypic flexibility can provide a fine-scale cellular understanding of how organisms acclimate. In the last 30 years, Mya truncata populations around the UK have faced an average increase in sea surface temperature of 0.7 °C and further warming of between 1.5 and 4 °C, in all marine regions adjacent to the UK, is predicted by the end of the century. Hence, data are required on the ability of M. truncata to acclimate to physiological stresses, and most notably, chronic increases in temperature. Animals in the present study were exposed to chronic heat-stress for 2 months prior to shell damage and subsequently, only 3, out of 20 damaged individuals, were able to repair their shells within 2 weeks. Differentially expressed genes (between control and damaged animals) were functionally enriched with processes relating to cellular stress, the immune response and biomineralisation. Comparative transcriptomics highlighted genes, and more broadly molecular mechanisms, that are likely to be pivotal in this lack of acclimation. This study demonstrates that discovery-led transcriptomic profiling of animals during stress-response experiments can shed light on the complexity of biological processes and changes within organisms that can be more difficult to detect at higher levels of biological organisation.

Biologically active secondary metabolites from fungi. 12.(1) oidiolactones A-F, labdane diterpene derivatives isolated from oidiodendron truncata

PubMed

John; Krohn; Florke; Aust; Draeger; Schulz

1999-09-01

Two known (1 and 2) and four new (3-6) diterpenes named oidiolactones A-F, respectively, and the antibiotic cladosporin were isolated from the fungus Oidiodendron truncata. The structure determination was mainly based on 1D and 2D NMR spectroscopy. The structures of compound 4, displaying an equilibrium between open-chain and cyclized form, and of cladosporin were confirmed by X-ray analysis.

Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae; Rhaphidophorinae): New additions to the genera Eurhaphidophora and Stonychophora.

PubMed

Bian, Xun; Shi, Fuming

2016-05-05

A key to the genera of Rhaphidophorinae is present. One new species of Eurhaphidophora, E. truncata Bian & Shi sp. nov., and the female sex of E. visibilis Gorochov, 2010 are described from China. Meanwhile, Stonychophora is recorded for the first time in the Chinese fauna and a new species viz., Stonychophora hainanensis, is described from Hainan. The voucher material is deposited in the Museum of Hebei University.

New species of Brachiacantha Dejean, 1837 (Coleoptera: Coccinellidae) from Mexico and Central America.

PubMed

Nestor-Arriola, Jorge Ismael; Toledo-Hernández, Víctor Hugo

2017-12-15

Five new species of the genus Brachiacantha Dejean (Coccinellidae) from Mexico and Central America are described and illustrated. The species B. angulata sp. nov., B. truncata sp. nov., B. brevicuspidata sp. nov. and B. robustihamata sp. nov. are consistent with the dentipes group. The species B. brevihamata sp. nov. is consistent with the fifth group of Leng (1911); the species shares some characteristics with South American species.

Downregulation of net phosphorus-uptake capacity is inversely related to leaf phosphorus-resorption proficiency in four species from a phosphorus-impoverished environment.

PubMed

de Campos, Mariana C R; Pearse, Stuart J; Oliveira, Rafael S; Lambers, Hans

2013-03-01

Previous research has suggested a trade-off between the capacity of plants to downregulate their phosphorus (P) uptake capacity and their efficiency of P resorption from senescent leaves in species from P-impoverished environments. To investigate this further, four Australian native species (Banksia attenuata, B. menziesii, Acacia truncata and A. xanthina) were grown in a greenhouse in nutrient solutions at a range of P concentrations [P]. Acacia plants received between 0 and 500 µm P; Banksia plants received between 0 and 10 µm P, to avoid major P-toxicity symptoms in these highly P-sensitive species. For both Acacia species, the net P-uptake rates measured at 10 µm P decreased steadily with increasing P supply during growth. In contrast, in B. attenuata, the net rate of P uptake from a solution with 10 µm P increased linearly with increasing P supply during growth. The P-uptake rate of B. menziesii showed no significant response to P supply in the growing medium. Leaf [P] of the four species supported this finding, with A. truncata and A. xanthina showing an increase up to a saturation value of 19 and 21 mg P g(-1) leaf dry mass, respectively (at 500 µm P), whereas B. attenuata and B. menziesii both exhibited a linear increase in leaf [P], reaching 10 and 13 mg P g(-1) leaf dry mass, respectively, without approaching a saturation point. The Banksia plants grown at 10 µm P showed mild symptoms of P toxicity, i.e. yellow spots on some leaves and drying and curling of the tips of the leaves. Leaf P-resorption efficiency was 69 % (B. attenuata), 73 % (B. menziesii), 34 % (A. truncata) and 36 % (A. xanthina). The P-resorption proficiency values were 0·08 mg P g(-1) leaf dry mass (B. attenuata and B. menziesii), 0·32 mg P g(-1) leaf dry mass (A. truncata) and 0·36 mg P g(-1) leaf dry mass (A. xanthina). Combining the present results with additional information on P-remobilization efficiency and the capacity to downregulate P-uptake capacity for two other

Downregulation of net phosphorus-uptake capacity is inversely related to leaf phosphorus-resorption proficiency in four species from a phosphorus-impoverished environment

PubMed Central

de Campos, Mariana C. R.; Pearse, Stuart J.; Oliveira, Rafael S.; Lambers, Hans

2013-01-01

Background and Aims Previous research has suggested a trade-off between the capacity of plants to downregulate their phosphorus (P) uptake capacity and their efficiency of P resorption from senescent leaves in species from P-impoverished environments. Methods To investigate this further, four Australian native species (Banksia attenuata, B. menziesii, Acacia truncata and A. xanthina) were grown in a greenhouse in nutrient solutions at a range of P concentrations [P]. Acacia plants received between 0 and 500 µm P; Banksia plants received between 0 and 10 µm P, to avoid major P-toxicity symptoms in these highly P-sensitive species. Key Results For both Acacia species, the net P-uptake rates measured at 10 µm P decreased steadily with increasing P supply during growth. In contrast, in B. attenuata, the net rate of P uptake from a solution with 10 µm P increased linearly with increasing P supply during growth. The P-uptake rate of B. menziesii showed no significant response to P supply in the growing medium. Leaf [P] of the four species supported this finding, with A. truncata and A. xanthina showing an increase up to a saturation value of 19 and 21 mg P g−1 leaf dry mass, respectively (at 500 µm P), whereas B. attenuata and B. menziesii both exhibited a linear increase in leaf [P], reaching 10 and 13 mg P g−1 leaf dry mass, respectively, without approaching a saturation point. The Banksia plants grown at 10 µm P showed mild symptoms of P toxicity, i.e. yellow spots on some leaves and drying and curling of the tips of the leaves. Leaf P-resorption efficiency was 69 % (B. attenuata), 73 % (B. menziesii), 34 % (A. truncata) and 36 % (A. xanthina). The P-resorption proficiency values were 0·08 mg P g−1 leaf dry mass (B. attenuata and B. menziesii), 0·32 mg P g−1 leaf dry mass (A. truncata) and 0·36 mg P g−1 leaf dry mass (A. xanthina). Combining the present results with additional information on P-remobilization efficiency and the capacity to

Mining the transcriptomes of four commercially important shellfish species for single nucleotide polymorphisms within biomineralization genes.

PubMed

Vendrami, David L J; Shah, Abhijeet; Telesca, Luca; Hoffman, Joseph I

2016-06-01

Transcriptional profiling not only provides insights into patterns of gene expression, but also generates sequences that can be mined for molecular markers, which in turn can be used for population genetic studies. As part of a large-scale effort to better understand how commercially important European shellfish species may respond to ocean acidification, we therefore mined the transcriptomes of four species (the Pacific oyster Crassostrea gigas, the blue mussel Mytilus edulis, the great scallop Pecten maximus and the blunt gaper Mya truncata) for single nucleotide polymorphisms (SNPs). Illumina data for C. gigas, M. edulis and P. maximus and 454 data for M. truncata were interrogated using GATK and SWAP454 respectively to identify between 8267 and 47,159 high quality SNPs per species (total=121,053 SNPs residing within 34,716 different contigs). We then annotated the transcripts containing SNPs to reveal homology to diverse genes. Finally, as oceanic pH affects the ability of organisms to incorporate calcium carbonate, we honed in on genes implicated in the biomineralization process to identify a total of 1899 SNPs in 157 genes. These provide good candidates for biomarkers with which to study patterns of selection in natural or experimental populations. Copyright © 2016 Elsevier B.V. All rights reserved.

[Negative air ions generated by plants upon pulsed electric field stimulation applied to soil].

PubMed

Wu, Ren-ye; Deng, Chuan-yuan; Yang, Zhi-jian; Weng, Hai-yong; Zhu, Tie-jun-rong; Zheng, Jin-gui

2015-02-01

This paper investigated the capacity of plants (Schlumbergera truncata, Aloe vera var. chinensis, Chlorophytum comosum, Schlumbergera bridgesii, Gymnocalycium mihanovichii var. friedrichii, Aspidistra elatior, Cymbidium kanran, Echinocactus grusonii, Agave americana var. marginata, Asparagus setaceus) to generate negative air ions (NAI) under pulsed electric field stimulation. The results showed that single plant generated low amounts of NAI in natural condition. The capacity of C. comosum and G. mihanovichii var. friedrichii generated most NAI among the above ten species, with a daily average of 43 ion · cm(-3). The least one was A. americana var. marginata with the value of 19 ion · cm(-3). When proper pulsed electric field stimulation was applied to soil, the NAI of ten plant species were greatly improved. The effect of pulsed electric field u3 (average voltage over the pulse period was 2.0 x 10(4) V, pulse frequency was 1 Hz, and pulse duration was 50 ms) was the greatest. The mean NAI concentration of C. kanran was the highest 1454967 ion · cm(-3), which was 48498.9 times as much as that in natural condition. The lowest one was S. truncata with the value of 34567 ion · cm(-3), which was 843.1 times as much as that in natural condition. The capacity of the same plants to generate negative air ion varied extremely under different intensity pulsed electric fields.

Taxonomic notes on Neoperla (Plecoptera: Perlidae) from Sichuan Province of China with the description of two new species.

PubMed

Li, Weihai; Wang, Ying; Wang, Rongfeng

2017-01-17

Species of the perlid genus Neoperla from Sichuan Province, China are reviewed. Two new species are described, Neoperla caii Li & Wang, sp. nov. and N. emeishana Li & Wang, sp. nov. The new species are compared with related congeners. Available types of several known Neoperla species from Sichuan Province were studied and complementary descriptions or brief taxonomic comments are presented for N. bilineata Wu & Claassen, N. chui Wu & Claassen, N. microtumida Wu & Claassen, N. quadrata Wu & Claassen and N. truncata Wu.

Coccidia of Aleutian Canada geese

USGS Publications Warehouse

Greiner, E.C.; Forrester, Donald J.; Carpenter, J.W.; Yparraguirre, D.R.

1981-01-01

Fecal samples from 122 captive and 130 free-ranging Aleutian Canada geese (Branta canadensis leucopareia) were examined for oocysts of coccidia. Freeranging geese sampled on the spring staging ground near Crescent City, California were infected with Eimeria hermani, E. truncata, E. magnalabia, E. fulva, E. clarkei and Tyzzeria parvula. Except for E. clarkei, the same species of coccidia were found in geese on their breeding grounds in Alaska. Most of the coccidial infections in captive geese from Amchitka Island, Alaska and Patuxent Wildlife Research Center, Maryland, consisted of Tyzzeria.

New records of Brazilian cicadas including the description of a new species (Hemiptera: Cicadoidea, Cicadidae).

PubMed

Sanborn, Allen F

2008-01-01

A new species of Proarna Stål is described from southern Brazil. Proarna gianucai sp. nov. is distinguished by its coloration and genitalia. The species inhabits coastal dune environments and is associated with the perennial grass Panicum racemosum (P. Beauv.) Spreng. Adults are active from December to March. The first records of Carineta durantoni Boulard, Carineta gemella Boulard, Carineta pilifera Walker, Fidicina christinae Boulard & Martinelli, Fidicina torresi Boulard & Martinellli, Fidicinoides determinata (Walker), Fidicinoides distanti (Goding), Fidicinoides glauca (Goding), Majeorona truncata Goding, and Zammara columbia Distant for Brazil are provided. The new species and new records bring the total cicada diversity of Brazil to 146 species.

Ten new species from the Patagonian Andes (Argentina and Chile), mostly belonging to a newly designated Stigmella purpurimaculae group (Lepidoptera: Nepticulidae).

PubMed

Stonis, Jonas R; Remeikis, Andrius; Davis, Donald R

2014-11-25

Ten new Stigmella Schrank species are described: Stigmella purpurimaculae Remeikis & Stonis, sp. nov., S. cana Remeikis & Stonis, sp. nov., S. truncata Remeikis & Stonis, sp. nov., S. sceptra Remeikis & Stonis, sp. nov., S. concreta Remeikis & Stonis, sp. nov., S. pseudoconcreta Remeikis & Stonis, sp. nov., S. quadrata Remeikis & Stonis, sp. nov. (all belonging to the newly designated S. purpurimaculae group), and S. semilactea Remeikis & Stonis, sp. nov., S. brutea Remeikis & Stonis, sp. nov., S. pseudodigitata Remeikis & Stonis, sp. nov. (not attributed to a species group) are described from the Andes (Patagonia: Argentina and Chile). For the species of the purpurimaculae group, a partial reduction of phallus, dentate cornuti, and strong development of utriculus (which can be equal or longer of the corpus bursae) are characteristic. Some of the species of the purpurimaculae group were collected near Nothofagus pumilio (Poepp. & Endl.) Krasser, Nothofagaceae, but there is still no confirmation that Nothofagus is a host-plant. All new Stigmella species are illustrated with photographs and drawings of the adults and genitalia.

[Syllinae (Syllidae: Polychaeta) of the Parque Nacional de Coiba, Panama].

PubMed

Capa, M; San Martín, G; López, E

2001-03-01

Four expeditions were made to Coiba National Park between 1996 and 1998 to characterize this part of the poorly known Panamian Pacific polychaete fauna. The samples were collected by SCUBA diving, either by removing 4 kg blocks of dead coral (Pocillopora sp.) or scraping off 25 x 25 cm quadrats of Telesto multiflora or algae (Dyctiota cf. flavellata, Padina cf. durvillaei and another currently unidentified species). This paper deals with the Syllinae from hard substrates. Twenty-two species belonging to six genera of the subfamily Syllinae Grube, 1850 (Syllidae: Polychaeta) are reported. A new species, Syllis castroviejoi, is described. Four species are newly reported for the Eastern Pacific: Syllis beneliahuae (Campoy & Alquézar, 1982), S. botosaneanui (Hartmann-Schröder, 1973), S. corallicola Verrill, 1900 and S. garciai (Campoy, 1982), and, likewise, two species are first reports for the Central American Pacific coast: Branchiosyllis pacifica Rioja, 1941 and Syllis truncata Haswell, 1920. Two species, Syllis magna (Westheide, 1974) and S. pigmentata (Chamberlin, 1919), are newly reported for Panama.

Invertebrate shells (mollusca, foraminifera) as pollution indicators, Red Sea Coast, Egypt

NASA Astrophysics Data System (ADS)

Youssef, Mohamed; Madkour, Hashem; Mansour, Abbas; Alharbi, Wedad; El-Taher, Atef

2017-09-01

To assess the degree of pollution and its impact on the environment along the Red Sea Coast, the most abundant nine species of recent benthic foraminifera and three species of molluscan shells have been selected for the analysis of Fe, Mn, Zn, Cu, Pb, Ni, Co, and Cd concentrations. The selected foraminiferal species are: Textularia agglutinans, Amphispsorus hemprichii, Sorites marginalis, Peneroplis planatus, Borelis schlumbergeri, Amphistegina lessonii, Ammonia beccarii, Operculina gaimairdi, and Operculinella cumingii. The selected molluscan shells are: Lambis truncata and Strombus tricornis (gastropods) and Tridacana gigas (bivalves). The inorganic material analysis of foraminifera and molluscs from the Quseir and Safaga harbors indicates that foraminifera tests include higher concentrations of heavy metals such as Fe and Mn than molluscan shells. These results are supported by the black tests of porcelaneous foraminifera and reflect iron selectivity. The Cd and Pb concentrations in molluscan shells are high in the El Esh Area because of oil pollution at this site. The Cu, Zn, and Ni concentrations in the studied invertebrates are high at Quseir Harbor and in the El Esh Area because of the strong influence of terrigenous materials that are rich in these metals. The heavy metal contamination is mostly attributed to anthropogenic sources.

Morphological and molecular identification of Sarcocystis spp. from the sika deer (Cervus nippon), including two new species Sarcocystis frondea and Sarcocystis nipponi.

PubMed

Rudaitytė-Lukošienė, Eglė; Prakas, Petras; Butkauskas, Dalius; Kutkienė, Liuda; Vepštaitė-Monstavičė, Iglė; Servienė, Elena

2018-05-01

Diaphragm muscles of 25 sika deer (Cervus nippon) farmed in Lithuania were examined for sarcocysts of Sarcocystis species. Two new Sarcocystis species, Sarcocystis frondea and Sarcocystis nipponi, were observed using light microscopy (LM) and transmission electron microscopy (TEM) and characterized by 18S ribosomal DNA (rDNA) and subunit I of cytochrome c oxidase (cox1) sequence analyses. By LM, sarcocysts of S. frondea and S. nipponi were ribbon-shaped and had finger-like sarcocyst wall protrusions, respectively. Under TEM, protrusions of S. frondea were about 9 × 1-1.5 μm, filled with clearly visible electron-dense substance and microtubules, type 39-like. Whereas, protrusions (about 9 × 0.2 μm) of S. nipponi arose from dome-shaped bases were filled with microtubules extending to the ground substance layer, type 9o-like. Moreover, three known Sarcocystis spp., Sarcocystis entzerothi, Sarcocystis ovalis, and Sarcocystis truncata previously described in other cervids as intermediate hosts, were characterized in sika deer. The cox1 was more suitable than 18S rDNA delimitating closely related Sarcocystis species from cervids. The phylogenetic results suggest that scavenger birds could be definitive hosts of S. frondea. According to the summarized morphological data on Sarcocystis found in the sika deer, such host should harbor at least nine different Sarcocystis species.

Insights from the Shell Proteome: Biomineralization to Adaptation

PubMed Central

Arivalagan, Jaison; Yarra, Tejaswi; Marie, Benjamin; Sleight, Victoria A.; Duvernois-Berthet, Evelyne; Clark, Melody S.; Marie, Arul; Berland, Sophie

2017-01-01

Bivalves have evolved a range of complex shell forming mechanisms that are reflected by their incredible diversity in shell mineralogy and microstructures. A suite of proteins exported to the shell matrix space plays a significant role in controlling these features, in addition to underpinning some of the physical properties of the shell itself. Although, there is a general consensus that a minimum basic protein tool kit is required for shell construction, to date, this remains undefined. In this study, the shell matrix proteins (SMPs) of four highly divergent bivalves (The Pacific oyster, Crassostrea gigas; the blue mussel, Mytilus edulis; the clam, Mya truncata, and the king scallop, Pecten maximus) were analyzed in an identical fashion using proteomics pipeline. This enabled us to identify the critical elements of a “basic tool kit” for calcification processes, which were conserved across the taxa irrespective of the shell morphology and arrangement of the crystal surfaces. In addition, protein domains controlling the crystal layers specific to aragonite and calcite were also identified. Intriguingly, a significant number of the identified SMPs contained domains related to immune functions. These were often are unique to each species implying their involvement not only in immunity, but also environmental adaptation. This suggests that the SMPs are selectively exported in a complex mix to endow the shell with both mechanical protection and biochemical defense. PMID:27744410

Soft-sediment crustacean diversity and distribution along the Portuguese continental shelf

NASA Astrophysics Data System (ADS)

Sampaio, Leandro; Mamede, Renato; Ricardo, Fernando; Magalhães, Luísa; Rocha, Hélder; Martins, Roberto; Dauvin, Jean-Claude; Rodrigues, Ana Maria; Quintino, Victor

2016-11-01

This study analyzed the crustacean diversity, distribution and relationship with environmental factors in the western and the southern Portuguese continental shelf, between 10 and 200 m depth. A total of 10,639 specimens belonging to 242 taxa from 90 families were identified, mostly amphipods (55.8% of the total taxa). The mysid Gastrosaccus spinifer and the amphipods Socarnes erythrophthalmus and Cheirocratus sundevallii were the most abundant and the amphipods Ampelisca brevicornis, Leucothoe incisa and Autonoe spiniventris were the most frequent species. The highest abundance and diversity was found in coarser sediments with up to 306 individuals per 0.1 m2. Alpha diversity ranged from 1 to 28 sp./0.1 m2. Moreover, this study confirmed six previously doubtful first records and added an additional 19 new records to the Portuguese fauna. The results also confirmed the Portuguese coast as a transition zone of mixed Atlantic and Mediterranean faunas and exposed a noticeable North African and Macaronesian influence. A multivariate analysis based on the abundance of crustaceans revealed six affinity groups characterized by: (a) C. sundevallii, Guernea (Guernea) coalita and Sarsinebalia cristoboi on very coarse sands; (b) G. spinifer, Nototropis falcatus and Pontocrates arenarius on coarse sands; (c) Othomaera othonis, Processa modica modica and Animoceradocus semiserratus on heterogeneous medium sands; (d) A. brevicornis, Urothoe pulchella and Necalianassa truncata on fine sands; (e) Ampelisca pectenata, Bodotria scorpioides and Astacilla dilatata on heterogeneous fine sands and (f) Callianassa subterranea, Ampelisca tenuicornis and Ampelisca typica on muddy fine sands. Sediment grain-size and depth were the variables best related to the benthic crustacean spatial distribution patterns along the Portuguese continental shelf.