Sample records for kew botanists discover

  1. Imprisoned in state care? Life inside Kew Cottages 1925-2008.

    PubMed

    Manning, Corinne

    2009-01-01

    Established in 1887, Kew Cottages was Australia's oldest and largest specialised institution for people with intellectual disability. Kew Cottages was originally designed as a place of benevolent care and education for children. However its secluded location, adjacent to a 'Lunatic Asylum,' and its use of physical security measures resulted in its reputation as a place of incarceration. This viewpoint emerged through oral history testimony collected as part of the Kew Cottages History Project during 2005-08. Oral histories, which were recorded from people closely associated with Kew Cottages, reveal that despite the introduction of reforms in the mid-twentieth century to accord residents greater freedoms, poor living conditions, strict regimentation, violence, and abuse, all contributed to a prison-like environment within the institution.

  2. Exploiting Patient Labour at Kew Cottages, Australia, 1887-1950

    ERIC Educational Resources Information Center

    Monk, Lee-Ann

    2010-01-01

    This article examines the exploitation of patient labour at Kew Cottages, Australia's first purpose-built state institution for people with learning disabilities. Analysing historical evidence for the period 1887-1950 shows that unpaid patient labour contributed significantly to the economy of the Cottages and so to the government department of…

  3. Development of Fluidic Guidance for KEW (Kinetic Energy Weapon) Projectiles

    DTIC Science & Technology

    1988-12-30

    commanded to a hit-to-kill on a hostile ICBK booster. A novel application of-the photo-acoustic effect is used for laser detection. An acoustic wave...Hughes High Endo-Atmospheric Interceptor Concept.. 2 3 Conceptual SDI KE projectile ........................ 3 4 Schematic of photo-acoustic effect ...practical, KEWs must be lightweight, able to withstand high "g" forces, and insensitive to nuclear and electro-magnetic effects . Laser command guidance can

  4. Making Kew Observatory: the Royal Society, the British Association and the politics of early Victorian science.

    PubMed

    Macdonald, Lee T

    2015-09-01

    Built in 1769 as a private observatory for King George III, Kew Observatory was taken over in 1842 by the British Association for the Advancement of Science (BAAS). It was then quickly transformed into what some claimed to be a 'physical observatory' of the sort proposed by John Herschel - an observatory that gathered data in a wide range of physical sciences, including geomagnetism and meteorology, rather than just astronomy. Yet this article argues that the institution which emerged in the 1840s was different in many ways from that envisaged by Herschel. It uses a chronological framework to show how, at every stage, the geophysicist and Royal Artillery officer Edward Sabine manipulated the project towards his own agenda: an independent observatory through which he could control the geomagnetic and meteorological research, including the ongoing 'Magnetic Crusade'. The political machinations surrounding Kew Observatory, within the Royal Society and the BAAS, may help to illuminate the complex politics of science in early Victorian Britain, particularly the role of 'scientific servicemen' such as Sabine. Both the diversity of activities at Kew and the complexity of the observatory's origins make its study important in the context of the growing field of the 'observatory sciences'.

  5. Re-Discovering Mendel: The Case of Carl Correns

    ERIC Educational Resources Information Center

    Rheinberger, Hans-Jörg

    2015-01-01

    Carl Erich Correns (1864-1933) is remembered in the annals of science as one of the three botanists who re-discovered Mendel's laws. He can also, however, be regarded as one of the founding figures of classical genetics in Germany. Between 1894 and 1899 he carried out the crossing experiments with corn and peas that led to the re-statement of…

  6. [A Prussian in Venice: the botanist Melchior Wieland (1520-1589), pioneer in botanical field research in the Levant].

    PubMed

    Herrmann, Sabine

    2015-01-01

    The Italian physician and botanist Prospero Alpini (1553-1617) is considered as one of the most famous 16th Century Italian botanists having explored the plant species of Egypt and the Near East. Alpinis best-known works as for example De medicina Egyptiorum (Venetijs 1591) or De plantis Aegypti liber (Venetijs 1592), however, wouldn't certainly have been made possible without the influence of his academic teacher, the Prussian physician and botanist Melchior Wieland (ca. 1520-1589), having been applied director of the botanical garden of Padua in 1561. This study is therefore dedicated to the life, academic career, works and reception of this nearly forgotten botanist.

  7. Behind the Public Face of Kew: Education and Conservation in the Millennium Seed Bank

    ERIC Educational Resources Information Center

    McFarlane, Angela

    2010-01-01

    At its Wakehurst Place garden in West Sussex, the Royal Botanic Gardens, Kew, has established the UK home of one of the world's largest conservation projects, the Millennium Seed Bank (MSB) partnership, a global project to conserve biodiversity by collecting and preserving seeds. This article describes what the MSB partnership does, how seeds are…

  8. A review of issues of nomenclature and taxonomy of Hypericum perforatum L. and Kew's Medicinal Plant Names Services.

    PubMed

    Dauncey, Elizabeth Anne; Irving, Jason Thomas Whitley; Allkin, Robert

    2017-10-16

    To review which names are used to refer to Hypericum perforatum L. in health regulation and medicinal plant references, and the potential for ambiguity or imprecision. Structured searches of Kew's Medicinal Plant Names Services Resource, supplemented with other online bibliographic resources, found that the scientific name Hypericum perforatum L. is used consistently in the literature, but variation between subspecies is rarely considered by researchers. Research is still published using only the common name 'St John's wort' despite it being imprecise; at least 80 other common names are also used for this plant in multiple languages. Ambiguous and alternative plant names can lead to ineffective regulation, misinterpretation of literature, substitution of raw material or the failure to locate all published research. Kew's Medicinal Plant Names Services (MPNS) maps all names used for each plant in medicinal plant references onto current taxonomy, thereby providing for disambiguation and comprehensive access to the regulations and references that cite that plant, regardless of the name used. MPNS also supplies the controlled vocabulary for plant names now required for compliance with a new standard (Identification of Medicinal Products, IDMP) adopted by medicines regulators worldwide. © 2017 Royal Pharmaceutical Society.

  9. Re-discovering Mendel: The Case of Carl Correns

    NASA Astrophysics Data System (ADS)

    Rheinberger, Hans-Jörg

    2015-01-01

    Carl Erich Correns (1864-1933) is remembered in the annals of science as one of the three botanists who re-discovered Mendel's laws. He can also, however, be regarded as one of the founding figures of classical genetics in Germany. Between 1894 and 1899 he carried out the crossing experiments with corn and peas that led to the re-statement of Gregor Mendel's (1822-1884) results. Between 1900 and 1910, he explored the complications of these laws, including the coupling of factors due to their chromosomal location and the inheritance of sex, in a great number of plant species. In later years Correns became interested in and experimented on phenomena of extra-nuclear inheritance.

  10. The voice of American botanists: the founding and establishment of the American Journal of Botany, "American botany," and the Great War (1906-1935).

    PubMed

    Smocovitis, Vassiliki Betty

    2014-03-01

    This paper examines the crucial early history of the American Journal of Botany from the years following the founding of the Botanical Society of America in 1906 to the termination of the agreement for publication with the Brooklyn Botanic Garden in 1935. It examines the efforts of individuals like F. C. Newcombe, who did the most to raise support for the journal and became the first Editor-in-Chief, in the context of the growing numbers of professional botanists and plant scientists who were actively engaged in research requiring appropriate publication venues and in the process of forming an independent identity as "American botanists." It also examines the launching of the journal in the context of the Great War in Europe and the transition from German botany to American botany in the second decade of the 20th century.

  11. [Maria Bandeira: a pioneering botanist at the Botanic Garden of Rio de Janeiro].

    PubMed

    Bediaga, Begonha; Peixoto, Ariane Luna; Filgueiras, Tarciso S

    2016-01-01

    This article sheds light on Maria Bandeira, the first female botanist to work at the Botanic Garden of Rio de Janeiro. She was active in the 1920s, but is absent from the historiography and little cited in the scientific literature. The significant number of plant, fungus, and lichen specimens she collected, her capacity to reach far-flung places, her extensive correspondence with foreign experts, and her studies at Sorbonne are all sources for the analysis of the way botany was practiced and the social networks at play in science at the time. The end of her scientific career, when she adopted a cloistered life with the Barefoot Carmelite nuns, can be interpreted variously, and partially explains why her contributions to Brazilian botany have been forgotten.

  12. Frank Lamson-Scribner: botanist and pioneer plant pathologist in the United States.

    PubMed

    Hilty, J W; Peterson, P D

    1997-01-01

    Frank Lamson-Scribner, in 1885, became the first scientist commissioned by the United States Department of Agriculture with the responsibility to study diseases of economic plants. His innovative approach established the foundation for applied plant pathology at the USDA. In an early international cooperative effort in plant pathology, he detailed the life history of the grape black rot pathogen. His early studies with the Bordeaux mixture introduced the American farmer to the modern era of chemical control. Scribner became the botanist and director of the University of Tennessee Agricultural Experiment Station. He published the first book written on the subject of plant diseases in the United States, and described a new nematode disease of potato. He asserted that the practical value of plant pathology to farmers would only follow meticulous studies of the life history of pathogens.

  13. Useful Brazilian plants listed in the manuscripts and publications of the Scottish medic and naturalist George Gardner (1812-1849).

    PubMed

    Fagg, Christopher W; Lughadha, Eimear Nic; Milliken, William; Nicholas Hind, D J; Brandão, Maria G L

    2015-02-23

    Information regarding the beneficial use of native Brazilian plants was compiled by a number of European naturalists in the 19th century. The Scottish surgeon botanist George Gardner (1812-1849) was one such naturalist; however, the useful plants recorded in his manuscripts have not yet been studied in depth. To present data recorded by Gardner in his manuscript Catalogue of Brazilian Plants regarding the use of native plants by Brazilian people and evaluate the extent to which they have been explored. Data on useful plants were obtained from Gardner׳s manuscript Catalogue of Brazilian Plants deposited in the Archives of the Royal Botanic Gardens, Kew, UK. The identification of each plant was determined and/or updated by consulting the preserved botanical collections of Gardner deposited in the Herbarium of the Royal Botanic Gardens, Kew (hereafter K), and expert determinations in other herbaria where duplicates are held. Correlated pharmacological studies for each plant were obtained from the PubMed database. Information recorded in Gardner׳s diary and previously published elsewhere complemented these data. A total of 63 useful plants was recorded from the Catalogue and a further 30 from Gardner׳s book Travels in the Interior of Brazil (Gardner, 1846). Of the recorded names in the Catalogue, 46 (73%) could be identified to species by consulting specimens collected by Gardner and held at Kew. Thirty-six different traditional uses were registered for the identified plants, the most common being as febrifuges, to treat venereal complaints and as purgatives. Fewer than 50% of these species have been the focus of published pharmacological studies, yet for those which have been thus investigated, the efficacies reported by Gardner were confirmed. The data recorded by Gardner represent a rich, relatively unexplored source of information regarding the traditional uses of Brazilian plants which merits further investigation. Copyright © 2014 Elsevier Ireland Ltd. All

  14. Women and botany in Risorgimento Italy.

    PubMed

    Logan, Gabriella Berti

    2004-01-01

    The first Italian women described as botanists by their male peers were active during the Risorgimento. They were few in numbers and only one of them, Elisabetta Fiorini, was recognized for her extensive contributions to the field of cryptogams in Italy by being nominated to important Italian scientific academies. No such recognition was ever alloted to the other female botanists who acted as collectors, correspondents and/or patrons to male botanists, had their own garden of exotic plants, or discovered a new species of phanerogams, and occasionally published on the subject. This study will show that a woman could still belong to Italian scientific academies in the nineteenth century, if like Fiorini, she chose to practice science in a way that was considered at par with that of male scientists.

  15. DISCOVER-AQ

    Atmospheric Science Data Center

    2017-01-31

    ... Relevant Documents:  DISCOVER-AQ - Airborne Science Data for Atmospheric Composition DISCOVER-AQ - NASA Earth ... DISCOVER-AQ - Mission Highlight Featured Articles : Articles featuring DISCOVER-AQ data products SCAR-B ...

  16. [The journal "Broteria," Jesuit botanists and Gonçalo Sampaio. Exchange of plants and ideas, and the development of botany in Portugal].

    PubMed

    Cabral, João Paulo

    2010-01-01

    The journal Broteria has covered a long path, since its foundation in 1902 until the mid 20's, when it stands as one of the best journals of natural history and a voice of the renewal of the natural sciences in Portugal. Broteria's success was due, mainly, to the remarkable qualities of its founders and main editors: their working capacity, intellectual standards and perseverance as well as the ability to establish a network of naturalists who sent them biological collections from remote regions and the ability to adapt to exile, while continuing to work and focusing their studies on the natural history of the exile country. The maintenance, in regular functioning, of their schools, and the opening to the collaboration of non Jesuit naturalists, such as the botanists from Oporto, also contributed to the success of Broteria.

  17. Discover Earth

    NASA Technical Reports Server (NTRS)

    Steele, Colleen

    1998-01-01

    Discover Earth is a NASA-sponsored project for teachers of grades 5-12, designed to: (1) enhance understanding of the Earth as an integrated system; (2) enhance the interdisciplinary approach to science instruction; and (3) provide classroom materials that focus on those goals. Discover Earth is conducted by the Institute for Global Environmental Strategies in collaboration with Dr. Eric Barron, Director, Earth System Science Center, The Pennsylvania State University; and Dr. Robert Hudson, Chair, the Department of Meteorology, University of Maryland at College Park. The enclosed materials: (1) represent only part of the Discover Earth materials; (2) were developed by classroom teachers who are participating in the Discover Earth project; (3) utilize an investigative approach and on-line data; and (4) can be effectively adjusted to classrooms with greater/without technology access. The Discover Earth classroom materials focus on the Earth system and key issues of global climate change including topics such as the greenhouse effect, clouds and Earth's radiation balance, surface hydrology and land cover, and volcanoes and climate change. All the materials developed to date are available on line at (http://www.strategies.org) You are encouraged to submit comments and recommendations about these materials to the Discover Earth project manager, contact information is listed below. You are welcome to duplicate all these materials.

  18. All about Plant & Animal Interdependency. Plant Life for Children[TM]. Schlessinger Science Library. [Videotape].

    ERIC Educational Resources Information Center

    2000

    Plants provide oxygen, food, shelter, medicine and more for all animals, including humans. In fact, people depend on plants for their very survival just as plants rely on animals! In All About Plant & Animal Interdependency, join aspiring botanists as they discover how plants and animals interrelate. Learn about the constant exchange of gases…

  19. Digimarc Discover on Google Glass

    NASA Astrophysics Data System (ADS)

    Rogers, Eliot; Rodriguez, Tony; Lord, John; Alattar, Adnan

    2015-03-01

    This paper reports on the implementation of the Digimarc® Discover platform on Google Glass, enabling the reading of a watermark embedded in a printed material or audio. The embedded watermark typically contains a unique code that identifies the containing media or object and a synchronization signal that allows the watermark to be read robustly. The Digimarc Discover smartphone application can read the watermark from a small portion of printed image presented at any orientation or reasonable distance. Likewise, Discover can read the recently introduced Digimarc Barcode to identify and manage consumer packaged goods in the retail channel. The Digimarc Barcode has several advantages over the traditional barcode and is expected to save the retail industry millions of dollars when deployed at scale. Discover can also read an audio watermark from ambient audio captured using a microphone. The Digimarc Discover platform has been widely deployed on the iPad, iPhone and many Android-based devices, but it has not yet been implemented on a head-worn wearable device, such as Google Glass. Implementing Discover on Google Glass is a challenging task due to the current hardware and software limitations of the device. This paper identifies the challenges encountered in porting Discover to the Google Glass and reports on the solutions created to deliver a prototype implementation.

  20. Discover Earth

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Discover Earth is a NASA-funded project for teachers of grades 5-12 who want to expand their knowledge of the Earth system, and prepare to become master teachers who promote Earth system science in their own schools, counties, and throughout their state. Participants from the following states are invited to apply: Connecticut, Delaware, Maine, Maryland, Massachusetts, New Hampshire, New Jersey, New York, Pennsylvania, Rhode Island, Vermont, and Washington, DC. Teachers selected for the project participate in a two-week summer workshop conducted at the University of Maryland, College Park; develop classroom-ready materials during the workshop for broad dissemination; conduct a minimum of two peer training activities during the coming school year; and participate in other enrichment/education opportunities as available and desired. Discover Earth is a team effort that utilizes expertise from a range of contributors, and balances science content with hands-on classroom applications.

  1. DISCOVER-AQ Aircraft insitu TraceGas Data (ICT)

    Atmospheric Science Data Center

    2018-03-28

    DISCOVER-AQ Aircraft insitu TraceGas Data (ICT) Project Title:  N/A Platform:  NASA ... Relevant Documents:  DISCOVER-AQ - Airborne Science Data for Atmospheric Composition DISCOVER-AQ - NASA Earth ...

  2. Did the ancient egyptians discover Algol?

    NASA Astrophysics Data System (ADS)

    Jetsu, L.; Porceddu, S.; Porceddu, S.; Lyytinen, J.; Kajatkari, P.; Markkanen, T.; Toivari-Viitala, J.

    2013-02-01

    Fabritius discovered the first variable star, Mira, in 1596. Holwarda determined the 11 months period of Mira in 1638. Montanari discovered the next variable star, Algol, in 1669. Its period, 2.867 days, was determined by Goodricke (178). Algol was associated with demon-like creatures, "Gorgon" in ancient Greek and "ghoul" in ancient Arab mythology. This indicates that its variability was discovered much before 1669 (Wilk 1996), but this mythological evidence is ambiguous (Davis 1975). For thousands of years, the Ancient Egyptian Scribes (AES) observed stars for timekeeping in a region, where there are nearly 300 clear nights a year. We discovered a significant periodicity of 2.850 days in their calendar for lucky and unlucky days dated to 1224 BC, "the Cairo Calendar". Several astrophysical and astronomical tests supported our conclusion that this was the period of Algol three millennia ago. The "ghoulish habits" of Algol could explain this 0.017 days period increase (Battersby 2012).

  3. Discovering the Solar System

    NASA Astrophysics Data System (ADS)

    Jones, Barrie W.

    1999-04-01

    Discovering the Solar System Barrie W. Jones The Open University, Milton Keynes, UK Discovering the Solar System is a comprehensive, up-to-date account of the Solar System and of the ways in which the various bodies have been investigated and modelled. The approach is thematic, with sequences of chapters on the interiors of planetary bodies, on their surfaces, and on their atmospheres. Within each sequence there is a chapter on general principles and processes followed by one or two chapters on specific bodies. There is also an introductory chapter, a chapter on the origin of the Solar System, and a chapter on asteroids, comets and meteorites. Liberally illustrated with diagrams, black and white photographs and colour plates, Discovering the Solar System also features: * tables of essential data * question and answers within the text * end of section review questions with answers and comments Discovering the Solar System is essential reading for all undergraduate students for whom astronomy or planetary science are components of their degrees, and for those at a more advanced level approaching the subject for the first time. It will also be of great interest to non-specialists with a keen interest in astronomy. A small amount of scientific knowledge is assumed plus familiarity with basic algebra and graphs. There is no calculus. Praise for this book includes: ".certainly qualifies as an authoritative text. The author clearly has an encyclopedic knowledge of the subject." Meteorics and Planetary Science ".liberally doused with relevant graphs, tables, and black and white figures of good quality." EOS, Transactions of the American Geophysical Union ".one of the best books on the Solar System I have seen. The general accuracy and quality of the content is excellent." Journal of the British Astronomical Association

  4. Discovering Mendeleev's Model.

    ERIC Educational Resources Information Center

    Sterling, Donna

    1996-01-01

    Presents an activity that introduces the historical developments in science that led to the discovery of the periodic table and lets students experience scientific discovery firsthand. Enables students to learn about patterns among the elements and experience how scientists analyze data to discover patterns and build models. (JRH)

  5. Dive and discover: Expeditions to the seafloor

    NASA Astrophysics Data System (ADS)

    Lawrence, Lisa Ayers

    The Dive and Discover Web site is a virtual treasure chest of deep sea science and classroom resources. The goals of Dive and Discover are to engage students, teachers, and the general public in the excitement of ocean disco very through an interactive educational Web site. You can follow scientists on oceanographic research cruises by reading their daily cruise logs, viewing photos and video clips of the discoveries, and even e-mailing questions to the scientists and crew. WHOI has also included an “Educator's Companion” section with teaching strategies, activities, and assessments, making Dive and Discover an excellent resource for the classroom.

  6. Dive and discover: Expeditions to the seafloor

    NASA Astrophysics Data System (ADS)

    Ayers Lawrence, Lisa

    The Dive and Discover Web site is a virtual treasure chest of deep sea science and classroom resources. The goals of Dive and Discover are to engage students, teachers, and the general public in the excitement of ocean disco very through an interactive educational Web site. You can follow scientists on oceanographic research cruises by reading their daily cruise logs, viewing photos and video clips of the discoveries, and even e-mailing questions to the scientists and crew. WHOI has also included an "Educator's Companion" section with teaching strategies, activities, and assessments, making Dive and Discover an excellent resource for the classroom.

  7. Discovering Diabetes Complications: an Ontology Based Model.

    PubMed

    Daghistani, Tahani; Shammari, Riyad Al; Razzak, Muhammad Imran

    2015-12-01

    Diabetes is a serious disease that spread in the world dramatically. The diabetes patient has an average of risk to experience complications. Take advantage of recorded information to build ontology as information technology solution will help to predict patients who have average of risk level with certain complication. It is helpful to search and present patient's history regarding different risk factors. Discovering diabetes complications could be useful to prevent or delay the complications. We designed ontology based model, using adult diabetes patients' data, to discover the rules of diabetes with its complications in disease to disease relationship. Various rules between different risk factors of diabetes Patients and certain complications generated. Furthermore, new complications (diseases) might be discovered as new finding of this study, discovering diabetes complications could be useful to prevent or delay the complications. The system can identify the patients who are suffering from certain risk factors such as high body mass index (obesity) and starting controlling and maintaining plan.

  8. DISCOVER-AQ Featured Articles

    Atmospheric Science Data Center

    2017-01-31

    ...     Not Your Average Video Traffic Report : Earth Matters Blogs  - DISCOVER-AQ planes have been flying over roadways, ... of air quality during “rush hour” and throughout the day. News Roundup: Arctic Ice, Spacesuit Satellites and More : Earth ...

  9. Discovering Diabetes Complications: an Ontology Based Model

    PubMed Central

    Daghistani, Tahani; Shammari, Riyad Al; Razzak, Muhammad Imran

    2015-01-01

    Background: Diabetes is a serious disease that spread in the world dramatically. The diabetes patient has an average of risk to experience complications. Take advantage of recorded information to build ontology as information technology solution will help to predict patients who have average of risk level with certain complication. It is helpful to search and present patient’s history regarding different risk factors. Discovering diabetes complications could be useful to prevent or delay the complications. Method: We designed ontology based model, using adult diabetes patients’ data, to discover the rules of diabetes with its complications in disease to disease relationship. Result: Various rules between different risk factors of diabetes Patients and certain complications generated. Furthermore, new complications (diseases) might be discovered as new finding of this study, discovering diabetes complications could be useful to prevent or delay the complications. Conclusion: The system can identify the patients who are suffering from certain risk factors such as high body mass index (obesity) and starting controlling and maintaining plan. PMID:26862251

  10. DISCOVER AQ Research Plane Arrives

    NASA Image and Video Library

    2011-06-28

    James Crawford, principal investigator and scientist based at NASA’s Langley Research Center in Hampton, Va., talks about the DISCOVER-AQ project on board the P-3B NASA research aircraft at Baltimore/Washington International Thurgood Marshall Airport, Tuesday, June 28, 2011, in Baltimore, Md. The aircraft is part of a month-long field campaign designed to improve satellite measurements of air pollution. The name of the experiment -- Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER -- AQ) -- is a mouthful, but its purpose is simple. Come July, the aircraft will be flying spirals over six ground stations in Maryland. Photo Credit: (NASA/Paul E. Alers)

  11. Helping Your Children Discover.

    ERIC Educational Resources Information Center

    Schroepfer, Dorothy; Yeaton, Charles

    Children discover many things about themselves, about the world around them, and about words and language, before they go to school. This booklet was prepared to guide parents in helping their children make such discoveries in preparation for the demands of learning in school. Activities are suggested for developing children's self-confidence,…

  12. Discovering interesting molecular substructures for molecular classification.

    PubMed

    Lam, Winnie W M; Chan, Keith C C

    2010-06-01

    Given a set of molecular structure data preclassified into a number of classes, the molecular classification problem is concerned with the discovering of interesting structural patterns in the data so that "unseen" molecules not originally in the dataset can be accurately classified. To tackle the problem, interesting molecular substructures have to be discovered and this is done typically by first representing molecular structures in molecular graphs, and then, using graph-mining algorithms to discover frequently occurring subgraphs in them. These subgraphs are then used to characterize different classes for molecular classification. While such an approach can be very effective, it should be noted that a substructure that occurs frequently in one class may also does occur in another. The discovering of frequent subgraphs for molecular classification may, therefore, not always be the most effective. In this paper, we propose a novel technique called mining interesting substructures in molecular data for classification (MISMOC) that can discover interesting frequent subgraphs not just for the characterization of a molecular class but also for the distinguishing of it from the others. Using a test statistic, MISMOC screens each frequent subgraph to determine if they are interesting. For those that are interesting, their degrees of interestingness are determined using an information-theoretic measure. When classifying an unseen molecule, its structure is then matched against the interesting subgraphs in each class and a total interestingness measure for the unseen molecule to be classified into a particular class is determined, which is based on the interestingness of each matched subgraphs. The performance of MISMOC is evaluated using both artificial and real datasets, and the results show that it can be an effective approach for molecular classification.

  13. DISCOVER in Middle School: Identifying Gifted Minority Students

    ERIC Educational Resources Information Center

    Sarouphim, Ketty M.

    2004-01-01

    The purpose of this study was to examine the validity of the grades 6-8 version of DISCOVER, a performance-based assessment, and investigate its effectiveness in identifying gifted minority students. Questions examined the alignment between DISCOVER and Gardner's (1983) theory of multiple intelligences (MI) and assessed gender and ethnic…

  14. Discover: What Is Public Health?

    MedlinePlus

    ... Resources Contact About Membership Contact Discover What is Public Health? Public health protects and improves the health of individuals, families, communities, and populations, locally and globally. Public health is personal. Public health professionals focus on preventing ...

  15. Discover: An Educational Opportunity for Women in Transition.

    ERIC Educational Resources Information Center

    Willson, Linda M.; And Others

    The Discover program is a program for women who want to become self-sufficient and self-supporting. Clients of the program may be separated or divorced, single mothers, or married to an underemployed spouse. The Discover program involves career exploration in the hope that its graduates will enter an occupational training program. The goals of the…

  16. Discover Supercomputer 5

    NASA Image and Video Library

    2017-12-08

    Two rows of the “Discover” supercomputer at the NASA Center for Climate Simulation (NCCS) contain more than 4,000 computer processors. Discover has a total of nearly 15,000 processors. Credit: NASA/Pat Izzo To learn more about NCCS go to: www.nasa.gov/topics/earth/features/climate-sim-center.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

  17. Discover Supercomputer 3

    NASA Image and Video Library

    2017-12-08

    The heart of the NASA Center for Climate Simulation (NCCS) is the “Discover” supercomputer. In 2009, NCCS added more than 8,000 computer processors to Discover, for a total of nearly 15,000 processors. Credit: NASA/Pat Izzo To learn more about NCCS go to: www.nasa.gov/topics/earth/features/climate-sim-center.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

  18. Discover Supercomputer 2

    NASA Image and Video Library

    2017-12-08

    The heart of the NASA Center for Climate Simulation (NCCS) is the “Discover” supercomputer. In 2009, NCCS added more than 8,000 computer processors to Discover, for a total of nearly 15,000 processors. Credit: NASA/Pat Izzo To learn more about NCCS go to: www.nasa.gov/topics/earth/features/climate-sim-center.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

  19. Discover Supercomputer 4

    NASA Image and Video Library

    2017-12-08

    This close-up view highlights one row—approximately 2,000 computer processors—of the “Discover” supercomputer at the NASA Center for Climate Simulation (NCCS). Discover has a total of nearly 15,000 processors. Credit: NASA/Pat Izzo To learn more about NCCS go to: www.nasa.gov/topics/earth/features/climate-sim-center.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

  20. Discover Supercomputer 1

    NASA Image and Video Library

    2017-12-08

    The heart of the NASA Center for Climate Simulation (NCCS) is the “Discover” supercomputer. In 2009, NCCS added more than 8,000 computer processors to Discover, for a total of nearly 15,000 processors. Credit: NASA/Pat Izzo To learn more about NCCS go to: www.nasa.gov/topics/earth/features/climate-sim-center.html NASA Goddard Space Flight Center is home to the nation's largest organization of combined scientists, engineers and technologists that build spacecraft, instruments and new technology to study the Earth, the sun, our solar system, and the universe.

  1. Discovering system requirements

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bahill, A.T.; Bentz, B.; Dean, F.F.

    1996-07-01

    Cost and schedule overruns are often caused by poor requirements that are produced by people who do not understand the requirements process. This report provides a high-level overview of the system requirements process, explaining types, sources, and characteristics of good requirements. System requirements, however, are seldom stated by the customer. Therefore, this report shows ways to help you work with your customer to discover the system requirements. It also explains terminology commonly used in the requirements development field, such as verification, validation, technical performance measures, and the various design reviews.

  2. Biological Activity of Recently Discovered Halogenated Marine Natural Products

    PubMed Central

    Gribble, Gordon W.

    2015-01-01

    This review presents the biological activity—antibacterial, antifungal, anti-parasitic, antiviral, antitumor, antiinflammatory, antioxidant, and enzymatic activity—of halogenated marine natural products discovered in the past five years. Newly discovered examples that do not report biological activity are not included. PMID:26133553

  3. Discover Assessment and Restoration Data | NOAA Gulf Spill Restoration

    Science.gov Websites

    Louisiana Mississippi Texas Region-wide Open Ocean Data Media & News Publications Press Releases Story Archive Home Discover Assessment and Restoration Data Discover Assessment and Restoration Data During the course of the damage assessment, we collected a large amount of data to document the location and extent

  4. Discovering body site and severity modifiers in clinical texts.

    PubMed

    Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K

    2014-01-01

    To research computational methods for discovering body site and severity modifiers in clinical texts. We cast the task of discovering body site and severity modifiers as a relation extraction problem in the context of a supervised machine learning framework. We utilize rich linguistic features to represent the pairs of relation arguments and delegate the decision about the nature of the relationship between them to a support vector machine model. We evaluate our models using two corpora that annotate body site and severity modifiers. We also compare the model performance to a number of rule-based baselines. We conduct cross-domain portability experiments. In addition, we carry out feature ablation experiments to determine the contribution of various feature groups. Finally, we perform error analysis and report the sources of errors. The performance of our method for discovering body site modifiers achieves F1 of 0.740-0.908 and our method for discovering severity modifiers achieves F1 of 0.905-0.929. Results indicate that both methods perform well on both in-domain and out-domain data, approaching the performance of human annotators. The most salient features are token and named entity features, although syntactic dependency features also contribute to the overall performance. The dominant sources of errors are infrequent patterns in the data and inability of the system to discern deeper semantic structures. We investigated computational methods for discovering body site and severity modifiers in clinical texts. Our best system is released open source as part of the clinical Text Analysis and Knowledge Extraction System (cTAKES).

  5. Discovering Technicolor

    NASA Astrophysics Data System (ADS)

    Andersen, J. R.; Antipin, O.; Azuelos, G.; Del Debbio, L.; Del Nobile, E.; Di Chiara, S.; Hapola, T.; Järvinen, M.; Lowdon, P. J.; Maravin, Y.; Masina, I.; Nardecchia, M.; Pica, C.; Sannino, F.

    2011-09-01

    We provide a pedagogical introduction to extensions of the Standard Model in which the Higgs is composite. These extensions are known as models of dynamical electroweak symmetry breaking or, in brief, Technicolor. Material covered includes: motivations for Technicolor, the construction of underlying gauge theories leading to minimal models of Technicolor, the comparison with electroweak precision data, the low-energy effective theory, the spectrum of the states common to most of the Technicolor models, the decays of the composite particles and the experimental signals at the Large Hadron Collider. The level of the presentation is aimed at readers familiar with the Standard Model but who have little or no prior exposure to Technicolor. Several extensions of the Standard Model featuring a composite Higgs can be reduced to the effective Lagrangian introduced in the text. We establish the relevant experimental benchmarks for Vanilla, Running, Walking, and Custodial Technicolor, and a natural fourth family of leptons, by laying out the framework to discover these models at the Large Hadron Collider.

  6. Discovering body site and severity modifiers in clinical texts

    PubMed Central

    Dligach, Dmitriy; Bethard, Steven; Becker, Lee; Miller, Timothy; Savova, Guergana K

    2014-01-01

    Objective To research computational methods for discovering body site and severity modifiers in clinical texts. Methods We cast the task of discovering body site and severity modifiers as a relation extraction problem in the context of a supervised machine learning framework. We utilize rich linguistic features to represent the pairs of relation arguments and delegate the decision about the nature of the relationship between them to a support vector machine model. We evaluate our models using two corpora that annotate body site and severity modifiers. We also compare the model performance to a number of rule-based baselines. We conduct cross-domain portability experiments. In addition, we carry out feature ablation experiments to determine the contribution of various feature groups. Finally, we perform error analysis and report the sources of errors. Results The performance of our method for discovering body site modifiers achieves F1 of 0.740–0.908 and our method for discovering severity modifiers achieves F1 of 0.905–0.929. Discussion Results indicate that both methods perform well on both in-domain and out-domain data, approaching the performance of human annotators. The most salient features are token and named entity features, although syntactic dependency features also contribute to the overall performance. The dominant sources of errors are infrequent patterns in the data and inability of the system to discern deeper semantic structures. Conclusions We investigated computational methods for discovering body site and severity modifiers in clinical texts. Our best system is released open source as part of the clinical Text Analysis and Knowledge Extraction System (cTAKES). PMID:24091648

  7. Did Viking discover life on Mars?

    NASA Technical Reports Server (NTRS)

    Klein, H. P.

    1999-01-01

    A major argument in the claim that life had been discovered during the Viking mission to Mars is that the results obtained in the Labeled Release (LR) experiment are analogous to those observed with terrestrial microorganisms. This assertion is critically examined and found to be implausible.

  8. Did Viking discover life on Mars?

    PubMed

    Klein, H P

    1999-12-01

    A major argument in the claim that life had been discovered during the Viking mission to Mars is that the results obtained in the Labeled Release (LR) experiment are analogous to those observed with terrestrial microorganisms. This assertion is critically examined and found to be implausible.

  9. Conjectures and reputations: The composition and reception of James Bradley's paper on the aberration of light with some reference to a third unpublished version.

    PubMed

    Fisher, John

    2010-03-01

    In January 1729 a paper written by James Bradley was read at two meetings of the Royal Society. On a newly discovered motion of the fixed stars, later described as the theory of the aberration of light, it was to transform the science of astrometry. The paper appeared as a narrative of a programme of observation first begun at Kew and finalized at Wanstead, but it was, in reality, a careful reconstruction devised to enhance his reputation in response to a recognition that the programme was initially conducted in terms that were inimical to what he conceived to be his interest. The planned attempt to repeat Robert Hooke's celebrated experiment by James Pound, Samuel Molyneux and George Graham was set up at Molyneux's residence in Kew with James Bradley replacing Pound after his untimely and sudden demise. The unexpected and counterintuitive behaviour of the object star γ Draconis and the eradication of any suspicion of instrumental or systemic error led to the abandonment of the attempt to measure annual parallax and the initiation of new conjectures. An annual nutation was proposed but after the observation of a control star, 35 Camelopardalis, this conjecture was abandoned. Unknown to Bradley and Graham a premature approach was made by Molyneux to Newton claiming that the 'nutation' negated the whole of Newton's system. In the abandonment of the nutation yet another conjecture opposed to Newtonian theory was proposed and abandoned. Bradley determined to use his own instrument designed on different principles by Graham to observe the phenomenon in Wanstead. At Wanstead Bradley observed many stars to determine the parameters of the phenomenon. With the law of the motion described, Bradley proposed a hypothesis to explain it. Drawn from his earlier work on the ephemerides of Jupiter's satellites his hypothesis of the 'new-discovered motion' was quickly presented to the Royal Society as Bradley was working on a later and more definitive version of his paper. It is

  10. Discovering novel subsystems using comparative genomics

    PubMed Central

    Ferrer, Luciana; Shearer, Alexander G.; Karp, Peter D.

    2011-01-01

    Motivation: Key problems for computational genomics include discovering novel pathways in genome data, and discovering functional interaction partners for genes to define new members of partially elucidated pathways. Results: We propose a novel method for the discovery of subsystems from annotated genomes. For each gene pair, a score measuring the likelihood that the two genes belong to a same subsystem is computed using genome context methods. Genes are then grouped based on these scores, and the resulting groups are filtered to keep only high-confidence groups. Since the method is based on genome context analysis, it relies solely on structural annotation of the genomes. The method can be used to discover new pathways, find missing genes from a known pathway, find new protein complexes or other kinds of functional groups and assign function to genes. We tested the accuracy of our method in Escherichia coli K-12. In one configuration of the system, we find that 31.6% of the candidate groups generated by our method match a known pathway or protein complex closely, and that we rediscover 31.2% of all known pathways and protein complexes of at least 4 genes. We believe that a significant proportion of the candidates that do not match any known group in E.coli K-12 corresponds to novel subsystems that may represent promising leads for future laboratory research. We discuss in-depth examples of these findings. Availability: Predicted subsystems are available at http://brg.ai.sri.com/pwy-discovery/journal.html. Contact: lferrer@ai.sri.com Supplementary information: Supplementary data are available at Bioinformatics online. PMID:21775308

  11. Planet Imager Discovers Young Kuiper Belt

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2015-07-01

    A debris disk just discovered around a nearby star is the closest thing yet seen to a young version of the Kuiper belt. This disk could be a key to better understanding the interactions between debris disks and planets, as well as how our solar system evolved early on in its lifetime. Hunting for an analog The best way to understand how the Kuiper belt — home to Pluto and thousands of other remnants of early icy planet formation in our solar system — developed would be to witness a similar debris disk in an earlier stage of its life. But before now, none of the disks we've discovered have been similar to our own: the rings are typically too large, the central star too massive, or the stars exist in regions very unlike what we think our Sun's birthplace was like. A collaboration led by Thayne Currie (National Astronomical Observatory of Japan) has changed this using the Gemini Planet Imager (GPI), part of a new generation of extreme adaptive-optics systems. The team discovered a debris disk of roughly the same size as the Kuiper belt orbiting the star HD 115600, located in the nearest OB association. The star is only slightly more massive than our Sun, and it lives in a star-forming region similar to the early Sun's environment. HD 115600 is different in one key way, however: it is only 15 million years old. This means that observing it gives us the perfect opportunity to observe how our solar system might have behaved when it was much younger. A promising future GPI's spatially-resolved spectroscopy, combined with measurements of the reflectivity of the disk, have led the team to suspect that the disk might be composed partly of water ice, just as the Kuiper belt is. The disk also shows evidence of having been sculpted by the motions of giant planets orbiting the central star, in much the same way as the outer planets of our solar system may have shaped the Kuiper belt. The observations of HD 115600 are some of the very first to emerge from GPI and the new

  12. DISCOVER-AQ Acoustics : Measurement and Data Report.

    DOT National Transportation Integrated Search

    2015-09-01

    The following report documents the acoustic measurements that supplemented the September 2013 NASA DISCOVER-AQ flight tests in Houston, Texas and the corresponding data set developed from those measurements. These data include aircraft performance an...

  13. Discovering the Sequential Structure of Thought

    ERIC Educational Resources Information Center

    Anderson, John R.; Fincham, Jon M.

    2014-01-01

    Multi-voxel pattern recognition techniques combined with Hidden Markov models can be used to discover the mental states that people go through in performing a task. The combined method identifies both the mental states and how their durations vary with experimental conditions. We apply this method to a task where participants solve novel…

  14. Discovering English with the Sketch Engine

    ERIC Educational Resources Information Center

    Thomas, James

    2014-01-01

    "Discovering English with the Sketch Engine" is the title of a new book (Thomas, 2014) which introduces the use of corpora in language study, teaching, writing and translating. It focuses on using the Sketch Engine to identify patterns of normal usage in many aspects of English ranging from morphology to discourse and pragmatics. This…

  15. What if Fleming had not discovered penicillin?

    PubMed

    Alharbi, Sulaiman Ali; Wainwright, Milton; Alahmadi, Tahani Awad; Salleeh, Hashim Bin; Faden, Asmaa A; Chinnathambi, Arunachalam

    2014-09-01

    What would have happened had Alexander Fleming not discovered penicillin in 1928? Perhaps the obvious answer is that, someone else would have discovered penicillin during 1930s and the Oxford group, would still have purified it sometime in the early 1940s. Here, however, in this counterfactual account of the penicillin story, it is argued that without Fleming, penicillin might still be undiscovered and the antibiotic age would never have dawned. As a result, many of the recent developments in medicine, such as organ transplantation, might have been delayed or, at best, made more hazardous. Penicillin might have come onto the scene a few years later but, had Fleming overlooked the discovery, it seems certain that penicillin would not have saved countless Allied lives, during and after D-Day. Instead of having enjoyed fifty and more years of the antibiotic age, it is argued here, that we would have had to rely upon highly developed sulphonamides, so-called "supasulfas", and other chemically-derived antibacterial drugs. Indeed, it might be the case that, even well into this new millennium, the antibiotic age has yet to dawn, and medicine is still waiting for someone to chance upon penicillin. Here we discuss what might have happened had Fleming not discovered penicillin and come to the conclusion that the medical armoury available today would have been far different and might have relied solely upon highly developed varieties of sulphonamides or similar, synthetic, non-antibiotic antibacterial agents.

  16. What if Fleming had not discovered penicillin?

    PubMed Central

    Alharbi, Sulaiman Ali; Wainwright, Milton; Alahmadi, Tahani Awad; Salleeh, Hashim Bin; Faden, Asmaa A.; Chinnathambi, Arunachalam

    2014-01-01

    What would have happened had Alexander Fleming not discovered penicillin in 1928? Perhaps the obvious answer is that, someone else would have discovered penicillin during 1930s and the Oxford group, would still have purified it sometime in the early 1940s. Here, however, in this counterfactual account of the penicillin story, it is argued that without Fleming, penicillin might still be undiscovered and the antibiotic age would never have dawned. As a result, many of the recent developments in medicine, such as organ transplantation, might have been delayed or, at best, made more hazardous. Penicillin might have come onto the scene a few years later but, had Fleming overlooked the discovery, it seems certain that penicillin would not have saved countless Allied lives, during and after D-Day. Instead of having enjoyed fifty and more years of the antibiotic age, it is argued here, that we would have had to rely upon highly developed sulphonamides, so-called “supasulfas”, and other chemically-derived antibacterial drugs. Indeed, it might be the case that, even well into this new millennium, the antibiotic age has yet to dawn, and medicine is still waiting for someone to chance upon penicillin. Here we discuss what might have happened had Fleming not discovered penicillin and come to the conclusion that the medical armoury available today would have been far different and might have relied solely upon highly developed varieties of sulphonamides or similar, synthetic, non-antibiotic antibacterial agents. PMID:25183937

  17. The Universe for all to discover

    NASA Astrophysics Data System (ADS)

    Ortiz-Gil, A.; Ballesteros, F.; Espinós, H.; Fernández-Soto, A.; Lanzara, M.; Moya, M. J.; Navarro, J.

    2015-05-01

    In the title of this paper, we have changed the slogan of the International Year of Astronomy, ``The Universe yours to discover" to ``The Universe for all to discover" in order to emphasize the need to think about broader audiences when we plan astronomical activities at school or during outreach events. The strategy we propose follows what is known as the Universal Design for Learning (UDL). UDL allows to reach to the general public as well as to audiences which might be regarded as ``special" because they have some disability. It has been shown that everybody has a preferred style of learning (some remember better what they see, others what they hear or what they touch) and therefore, everybody is more or less able under the different styles of learning. Through this talk I am going to outline some of the principles of the UDL that can be applied in the teaching and communication of Astronomy, along with an example of its implementation in the project ``A Touch of the Universe".

  18. 31 CFR 501.723 - Prehearing disclosures; methods to discover additional matter.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... discover additional matter. 501.723 Section 501.723 Money and Finance: Treasury Regulations Relating to... disclosures; methods to discover additional matter. (a) Initial disclosures. (1) Except to the extent... the respondent); (ii) The legal theories upon which it will rely; (iii) Copies and a list of documents...

  19. 31 CFR 501.723 - Prehearing disclosures; methods to discover additional matter.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... discover additional matter. 501.723 Section 501.723 Money and Finance: Treasury Regulations Relating to... disclosures; methods to discover additional matter. (a) Initial disclosures. (1) Except to the extent... the respondent); (ii) The legal theories upon which it will rely; (iii) Copies and a list of documents...

  20. 31 CFR 501.723 - Prehearing disclosures; methods to discover additional matter.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... discover additional matter. 501.723 Section 501.723 Money and Finance: Treasury Regulations Relating to... disclosures; methods to discover additional matter. (a) Initial disclosures. (1) Except to the extent... the respondent); (ii) The legal theories upon which it will rely; (iii) Copies and a list of documents...

  1. 31 CFR 501.723 - Prehearing disclosures; methods to discover additional matter.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... discover additional matter. 501.723 Section 501.723 Money and Finance: Treasury Regulations Relating to... disclosures; methods to discover additional matter. (a) Initial disclosures. (1) Except to the extent... the respondent); (ii) The legal theories upon which it will rely; (iii) Copies and a list of documents...

  2. What Does It Mean to be Central? A Botanical Geography of Paris 1830-1848.

    PubMed

    Hoquet, Thierry

    2016-02-01

    This paper focuses on the geography of the botanical community in Paris, under the July Monarchy (1830-1848). At that time, the Muséum d'Histoire naturelle (MHN) was at its institutional acme and, under the impulse of François Guizot, its budget was increasing dramatically. However, closer attention to manuscript sources (correspondence, travel diaries) reveals that the botanists of the time favoured other private institutions, located both on the Right and Left Banks of the Seine. The MHN was prestigious for its collections and professors but it was relatively remote from the centre of Paris, and its plant samples were sometimes difficult to access. Several other first-class private herbaria granted liberal access to botanists: those of Jacques Gay, Phillip Barker Webb, and Benjamin Delessert. Thanks to their wealth, these plant amateurs had ownership of historical herbaria consisting of species types alongside rich botanical libraries. Botanists visiting Paris from foreign countries or other provinces of France also spent some time studying less general plant collections, like those of Count Jaubert, or specialized collections, like Montagne's or Léveillé's on cryptogams. Other botanists also enjoyed renown at the time, although they published little, if anything (like Maire). Living in crammed apartments, literally in the middle of their plant samples, these botanists were key nodes in botanical networks, although they had no relation with the prestigious MHN.

  3. 48 CFR 752.209-71 - Organizational conflicts of interest discovered after award.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... Interest Discovered After Award (JUN 1993) (a) The Contractor agrees that, if after award it discovers... make an immediate and full disclosure in writing to the Contracting Officer which shall include a...

  4. 48 CFR 752.209-71 - Organizational conflicts of interest discovered after award.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... Interest Discovered After Award (JUN 1993) (a) The Contractor agrees that, if after award it discovers... make an immediate and full disclosure in writing to the Contracting Officer which shall include a...

  5. 48 CFR 752.209-71 - Organizational conflicts of interest discovered after award.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... Interest Discovered After Award (JUN 1993) (a) The Contractor agrees that, if after award it discovers... make an immediate and full disclosure in writing to the Contracting Officer which shall include a...

  6. 48 CFR 752.209-71 - Organizational conflicts of interest discovered after award.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... Interest Discovered After Award (JUN 1993) (a) The Contractor agrees that, if after award it discovers... make an immediate and full disclosure in writing to the Contracting Officer which shall include a...

  7. 48 CFR 752.209-71 - Organizational conflicts of interest discovered after award.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... Interest Discovered After Award (JUN 1993) (a) The Contractor agrees that, if after award it discovers... make an immediate and full disclosure in writing to the Contracting Officer which shall include a...

  8. Einstein@Home discovers a radio-quiet gamma-ray millisecond pulsar.

    PubMed

    Clark, Colin J; Pletsch, Holger J; Wu, Jason; Guillemot, Lucas; Kerr, Matthew; Johnson, Tyrel J; Camilo, Fernando; Salvetti, David; Allen, Bruce; Anderson, David; Aulbert, Carsten; Beer, Christian; Bock, Oliver; Cuéllar, Andres; Eggenstein, Heinz-Bernd; Fehrmann, Henning; Kramer, Michael; Kwang, Shawn A; Machenschalk, Bernd; Nieder, Lars; Ackermann, Markus; Ajello, Marco; Baldini, Luca; Ballet, Jean; Barbiellini, Guido; Bastieri, Denis; Bellazzini, Ronaldo; Bissaldi, Elisabetta; Blandford, Roger D; Bloom, Elliott D; Bonino, Raffaella; Bottacini, Eugenio; Brandt, Terri J; Bregeon, Johan; Bruel, Philippe; Buehler, Rolf; Burnett, Toby H; Buson, Sara; Cameron, Rob A; Caputo, Regina; Caraveo, Patrizia A; Cavazzuti, Elisabetta; Cecchi, Claudia; Charles, Eric; Chekhtman, Alexandre; Ciprini, Stefano; Cominsky, Lynn R; Costantin, Denise; Cutini, Sara; D'Ammando, Filippo; De Luca, Andrea; Desiante, Rachele; Di Venere, Leonardo; Di Mauro, Mattia; Di Lalla, Niccolò; Digel, Seth W; Favuzzi, Cecilia; Ferrara, Elizabeth C; Franckowiak, Anna; Fukazawa, Yasushi; Funk, Stefan; Fusco, Piergiorgio; Gargano, Fabio; Gasparrini, Dario; Giglietto, Nico; Giordano, Francesco; Giroletti, Marcello; Gomez-Vargas, Germán A; Green, David; Grenier, Isabelle A; Guiriec, Sylvain; Harding, Alice K; Hewitt, John W; Horan, Deirdre; Jóhannesson, Guðlaugur; Kensei, Shiki; Kuss, Michael; La Mura, Giovanni; Larsson, Stefan; Latronico, Luca; Li, Jian; Longo, Francesco; Loparco, Francesco; Lovellette, Michael N; Lubrano, Pasquale; Magill, Jeffrey D; Maldera, Simone; Manfreda, Alberto; Mazziotta, Mario N; McEnery, Julie E; Michelson, Peter F; Mirabal, Nestor; Mitthumsiri, Warit; Mizuno, Tsunefumi; Monzani, Maria Elena; Morselli, Aldo; Moskalenko, Igor V; Nuss, Eric; Ohsugi, Takashi; Omodei, Nicola; Orienti, Monica; Orlando, Elena; Palatiello, Michele; Paliya, Vaidehi S; de Palma, Francesco; Paneque, David; Perkins, Jeremy S; Persic, Massimo; Pesce-Rollins, Melissa; Porter, Troy A; Principe, Giacomo; Rainò, Silvia; Rando, Riccardo; Ray, Paul S; Razzano, Massimiliano; Reimer, Anita; Reimer, Olaf; Romani, Roger W; Saz Parkinson, Pablo M; Sgrò, Carmelo; Siskind, Eric J; Smith, David A; Spada, Francesca; Spandre, Gloria; Spinelli, Paolo; Thayer, Jana B; Thompson, David J; Torres, Diego F; Troja, Eleonora; Vianello, Giacomo; Wood, Kent; Wood, Matthew

    2018-02-01

    Millisecond pulsars (MSPs) are old neutron stars that spin hundreds of times per second and appear to pulsate as their emission beams cross our line of sight. To date, radio pulsations have been detected from all rotation-powered MSPs. In an attempt to discover radio-quiet gamma-ray MSPs, we used the aggregated power from the computers of tens of thousands of volunteers participating in the Einstein@Home distributed computing project to search for pulsations from unidentified gamma-ray sources in Fermi Large Area Telescope data. This survey discovered two isolated MSPs, one of which is the only known rotation-powered MSP to remain undetected in radio observations. These gamma-ray MSPs were discovered in completely blind searches without prior constraints from other observations, raising hopes for detecting MSPs from a predicted Galactic bulge population.

  9. Discovering Science through Art-Based Activities

    ERIC Educational Resources Information Center

    Alberts, Rebecca

    2010-01-01

    Art and science are intrinsically linked; the essence of art and science is discovery. Both artists and scientists work in a systematic but creative way--knowledge and understanding are built up through pieces of art or a series of labs. In the classroom, integrating science and visual art can provide students with the latitude to think, discover,…

  10. How cosmic rays were discovered and why they received this misnomer

    NASA Astrophysics Data System (ADS)

    Dorman, I. V.; Dorman, L. I.

    2014-05-01

    As many great discoveries, the phenomenon of cosmic rays was discovered mainly accidentally, during investigations that sought to answer another question: what are sources of air ionization? This problem became interesting for science about 230 years ago in the end of the 18th century, when physics met with a problem of leakage of electrical charge from very good isolated bodies. We describe the history how step by step cosmic rays was discovered and why this phenomenon received misnomer, how in cosmic rays was discovered the first antiparticle - positron. These discoveries were recognized among greatest in the 20th Century and were awarded by Nobel Prize.

  11. Discovering Synergistic Drug Combination from a Computational Perspective.

    PubMed

    Ding, Pingjian; Luo, Jiawei; Liang, Cheng; Xiao, Qiu; Cao, Buwen; Li, Guanghui

    2018-03-30

    Synergistic drug combinations play an important role in the treatment of complex diseases. The identification of effective drug combination is vital to further reduce the side effects and improve therapeutic efficiency. In previous years, in vitro method has been the main route to discover synergistic drug combinations. However, many limitations of time and resource consumption lie within the in vitro method. Therefore, with the rapid development of computational models and the explosive growth of large and phenotypic data, computational methods for discovering synergistic drug combinations are an efficient and promising tool and contribute to precision medicine. It is the key of computational methods how to construct the computational model. Different computational strategies generate different performance. In this review, the recent advancements in computational methods for predicting effective drug combination are concluded from multiple aspects. First, various datasets utilized to discover synergistic drug combinations are summarized. Second, we discussed feature-based approaches and partitioned these methods into two classes including feature-based methods in terms of similarity measure, and feature-based methods in terms of machine learning. Third, we discussed network-based approaches for uncovering synergistic drug combinations. Finally, we analyzed and prospected computational methods for predicting effective drug combinations. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

  12. Einstein@Home discovers a radio-quiet gamma-ray millisecond pulsar

    DOE PAGES

    Clark, Colin J.; Pletsch, Holger J.; Wu, Jason; ...

    2018-02-28

    Millisecond pulsars (MSPs) are old neutron stars that spin hundreds of times per second and appear to pulsate as their emission beams cross our line of sight. To date, radio pulsations have been detected from all rotation-powered MSPs. Here, in an attempt to discover radio-quiet gamma-ray MSPs, we used the aggregated power from the computers of tens of thousands of volunteers participating in the Einstein@Home distributed computing project to search for pulsations from unidentified gamma-ray sources in Fermi Large Area Telescope data. This survey discovered two isolated MSPs, one of which is the only known rotation-powered MSP to remain undetectedmore » in radio observations. These gamma-ray MSPs were discovered in completely blind searches without prior constraints from other observations, raising hopes for detecting MSPs from a predicted Galactic bulge population.« less

  13. Einstein@Home discovers a radio-quiet gamma-ray millisecond pulsar

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Clark, Colin J.; Pletsch, Holger J.; Wu, Jason

    Millisecond pulsars (MSPs) are old neutron stars that spin hundreds of times per second and appear to pulsate as their emission beams cross our line of sight. To date, radio pulsations have been detected from all rotation-powered MSPs. Here, in an attempt to discover radio-quiet gamma-ray MSPs, we used the aggregated power from the computers of tens of thousands of volunteers participating in the Einstein@Home distributed computing project to search for pulsations from unidentified gamma-ray sources in Fermi Large Area Telescope data. This survey discovered two isolated MSPs, one of which is the only known rotation-powered MSP to remain undetectedmore » in radio observations. These gamma-ray MSPs were discovered in completely blind searches without prior constraints from other observations, raising hopes for detecting MSPs from a predicted Galactic bulge population.« less

  14. Einstein@Home discovers a radio-quiet gamma-ray millisecond pulsar

    PubMed Central

    Clark, Colin J.; Pletsch, Holger J.; Wu, Jason; Guillemot, Lucas; Kerr, Matthew; Johnson, Tyrel J.; Camilo, Fernando; Salvetti, David; Allen, Bruce; Anderson, David; Aulbert, Carsten; Beer, Christian; Bock, Oliver; Cuéllar, Andres; Eggenstein, Heinz-Bernd; Fehrmann, Henning; Kramer, Michael; Kwang, Shawn A.; Machenschalk, Bernd; Nieder, Lars; Ackermann, Markus; Ajello, Marco; Baldini, Luca; Ballet, Jean; Barbiellini, Guido; Bastieri, Denis; Bellazzini, Ronaldo; Bissaldi, Elisabetta; Blandford, Roger D.; Bloom, Elliott D.; Bonino, Raffaella; Bottacini, Eugenio; Brandt, Terri J.; Bregeon, Johan; Bruel, Philippe; Buehler, Rolf; Burnett, Toby H.; Buson, Sara; Cameron, Rob A.; Caputo, Regina; Caraveo, Patrizia A.; Cavazzuti, Elisabetta; Cecchi, Claudia; Charles, Eric; Chekhtman, Alexandre; Ciprini, Stefano; Cominsky, Lynn R.; Costantin, Denise; Cutini, Sara; D’Ammando, Filippo; De Luca, Andrea; Desiante, Rachele; Di Venere, Leonardo; Di Mauro, Mattia; Di Lalla, Niccolò; Digel, Seth W.; Favuzzi, Cecilia; Ferrara, Elizabeth C.; Franckowiak, Anna; Fukazawa, Yasushi; Funk, Stefan; Fusco, Piergiorgio; Gargano, Fabio; Gasparrini, Dario; Giglietto, Nico; Giordano, Francesco; Giroletti, Marcello; Gomez-Vargas, Germán A.; Green, David; Grenier, Isabelle A.; Guiriec, Sylvain; Harding, Alice K.; Hewitt, John W.; Horan, Deirdre; Jóhannesson, Guðlaugur; Kensei, Shiki; Kuss, Michael; La Mura, Giovanni; Larsson, Stefan; Latronico, Luca; Li, Jian; Longo, Francesco; Loparco, Francesco; Lovellette, Michael N.; Lubrano, Pasquale; Magill, Jeffrey D.; Maldera, Simone; Manfreda, Alberto; Mazziotta, Mario N.; McEnery, Julie E.; Michelson, Peter F.; Mirabal, Nestor; Mitthumsiri, Warit; Mizuno, Tsunefumi; Monzani, Maria Elena; Morselli, Aldo; Moskalenko, Igor V.; Nuss, Eric; Ohsugi, Takashi; Omodei, Nicola; Orienti, Monica; Orlando, Elena; Palatiello, Michele; Paliya, Vaidehi S.; de Palma, Francesco; Paneque, David; Perkins, Jeremy S.; Persic, Massimo; Pesce-Rollins, Melissa; Porter, Troy A.; Principe, Giacomo; Rainò, Silvia; Rando, Riccardo; Ray, Paul S.; Razzano, Massimiliano; Reimer, Anita; Reimer, Olaf; Romani, Roger W.; Saz Parkinson, Pablo M.; Sgrò, Carmelo; Siskind, Eric J.; Smith, David A.; Spada, Francesca; Spandre, Gloria; Spinelli, Paolo; Thayer, Jana B.; Thompson, David J.; Torres, Diego F.; Troja, Eleonora; Vianello, Giacomo; Wood, Kent; Wood, Matthew

    2018-01-01

    Millisecond pulsars (MSPs) are old neutron stars that spin hundreds of times per second and appear to pulsate as their emission beams cross our line of sight. To date, radio pulsations have been detected from all rotation-powered MSPs. In an attempt to discover radio-quiet gamma-ray MSPs, we used the aggregated power from the computers of tens of thousands of volunteers participating in the Einstein@Home distributed computing project to search for pulsations from unidentified gamma-ray sources in Fermi Large Area Telescope data. This survey discovered two isolated MSPs, one of which is the only known rotation-powered MSP to remain undetected in radio observations. These gamma-ray MSPs were discovered in completely blind searches without prior constraints from other observations, raising hopes for detecting MSPs from a predicted Galactic bulge population. PMID:29503868

  15. Strontium-90 Error Discovered in Subcontract Laboratory Spreadsheet

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    D. D. Brown A. S. Nagel

    1999-07-31

    West Valley Demonstration Project health physicists and environment scientists discovered a series of errors in a subcontractor's spreadsheet being used to reduce data as part of their strontium-90 analytical process.

  16. Intellectual Development and Interaction Effectiveness with DISCOVER.

    ERIC Educational Resources Information Center

    Roselle, Bruce E.; Hummel, Thomas J.

    1988-01-01

    Used Knefelkamp's and Slepitza's (1976) model of career-related intellectual development to investigate how students at different levels of development think as they interact with a computer-assisted career guidance system, DISCOVER II, which comprises modules on understanding interests, values, and abilities; searching for occupations based on…

  17. Pseudomonas blight discovered on raspberry in Watsonville

    USDA-ARS?s Scientific Manuscript database

    In the winter (February) of 2013, a field of raspberries in Watsonville was discovered to be infected with Pseudomonas syringae, the causal agent of Pseudomonas blight disease. This was the first documentation of this disease on raspberry in our region. The infection of raspberry plants is manifeste...

  18. Discovering Structural Regularity in 3D Geometry

    PubMed Central

    Pauly, Mark; Mitra, Niloy J.; Wallner, Johannes; Pottmann, Helmut; Guibas, Leonidas J.

    2010-01-01

    We introduce a computational framework for discovering regular or repeated geometric structures in 3D shapes. We describe and classify possible regular structures and present an effective algorithm for detecting such repeated geometric patterns in point- or mesh-based models. Our method assumes no prior knowledge of the geometry or spatial location of the individual elements that define the pattern. Structure discovery is made possible by a careful analysis of pairwise similarity transformations that reveals prominent lattice structures in a suitable model of transformation space. We introduce an optimization method for detecting such uniform grids specifically designed to deal with outliers and missing elements. This yields a robust algorithm that successfully discovers complex regular structures amidst clutter, noise, and missing geometry. The accuracy of the extracted generating transformations is further improved using a novel simultaneous registration method in the spatial domain. We demonstrate the effectiveness of our algorithm on a variety of examples and show applications to compression, model repair, and geometry synthesis. PMID:21170292

  19. Discovering Astronomy: An Astro 101 e-book

    NASA Astrophysics Data System (ADS)

    Shawl, Stephen J.; Byrd, Gene; Deustua, Susana E.; LoPresto, Michael C.

    2016-01-01

    Discovering Astronomy, now available in its 6th edition as an eText, has many advantages and features for your students. We have partnered with etextink.com and WebAssign.net to produce an affordable set of cost-saving options for your students. Also available is the Discovering Astronomy Activity Manual, which provides students with an active-learning experience.Our etext is device independent and thus accessible through any web browser. Americans with Disabilities Act compatibility provides access for all students. Hotlinks to outside sites provide further information for interested students. Lecture demonstration videos of important concepts, made specifically for this new edition, are embedded within the text as appropriate. Students can highlight text, take notes, and bookmark locations within the text. Important terms are linked to the glossary. Search capabilities allow students to easily find what they want.Instructors can interact with their students directly through the etext once the class roster has been provided. For example, instructors can embed assignments into their students' etext and add their own notes and updates, which are immediately visible to their students.Updates can be quickly made by us as new findings become available. For example, updates from New Horizons were added at the time of the closest approach to Pluto, and an update on the recent announcement of current water on Mars was added the day of the announcement.We will present results of our own experience with college and high school students' use of Discovering Astronomy in online courses.Details of the book, a sample chapter, and other information are available at discoveringastronomy.weebly.com.

  20. DISCOVER AQ Research Plane Arrives

    NASA Image and Video Library

    2011-06-28

    An unidentified researcher works aboard the P-3B NASA research aircraft at Baltimore/Washington International Thurgood Marshall Airport, Tuesday, June 28, 2011, in Baltimore, Md. The aircraft is part of a month-long field campaign designed to improve satellite measurements of air pollution. The name of the experiment -- Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER -- AQ) -- is a mouthful, but its purpose is simple. Come July, the aircraft will be flying spirals over six ground stations in Maryland. Photo Credit: (NASA/Paul E. Alers)

  1. Cochlear Implants Keep Twin Sisters Learning, Discovering Together

    MedlinePlus

    ... University. Photo: Johns Hopkins University Keep Twin Sisters Learning, Discovering Together Mia and Isabelle Jeppsen, 10, share ... her mother, gratefully, "There's the obvious benefit of learning to read, write and communicate with facility and ...

  2. Discovering amino acid patterns on binding sites in protein complexes

    PubMed Central

    Kuo, Huang-Cheng; Ong, Ping-Lin; Lin, Jung-Chang; Huang, Jen-Peng

    2011-01-01

    Discovering amino acid (AA) patterns on protein binding sites has recently become popular. We propose a method to discover the association relationship among AAs on binding sites. Such knowledge of binding sites is very helpful in predicting protein-protein interactions. In this paper, we focus on protein complexes which have protein-protein recognition. The association rule mining technique is used to discover geographically adjacent amino acids on a binding site of a protein complex. When mining, instead of treating all AAs of binding sites as a transaction, we geographically partition AAs of binding sites in a protein complex. AAs in a partition are treated as a transaction. For the partition process, AAs on a binding site are projected from three-dimensional to two-dimensional. And then, assisted with a circular grid, AAs on the binding site are placed into grid cells. A circular grid has ten rings: a central ring, the second ring with 6 sectors, the third ring with 12 sectors, and later rings are added to four sectors in order. As for the radius of each ring, we examined the complexes and found that 10Å is a suitable range, which can be set by the user. After placing these recognition complexes on the circular grid, we obtain mining records (i.e. transactions) from each sector. A sector is regarded as a record. Finally, we use the association rule to mine these records for frequent AA patterns. If the support of an AA pattern is larger than the predetermined minimum support (i.e. threshold), it is called a frequent pattern. With these discovered patterns, we offer the biologists a novel point of view, which will improve the prediction accuracy of protein-protein recognition. In our experiments, we produced the AA patterns by data mining. As a result, we found that arginine (arg) most frequently appears on the binding sites of two proteins in the recognition protein complexes, while cysteine (cys) appears the fewest. In addition, if we discriminate the shape

  3. Discovering Alaska's Salmon: A Children's Activity Book.

    ERIC Educational Resources Information Center

    Devaney, Laurel

    This children's activity book helps students discover Alaska's salmon. Information is provided about salmon and where they live. The salmon life cycle and food chains are also discussed. Different kinds of salmon such as Chum Salmon, Chinook Salmon, Coho Salmon, Sockeye Salmon, and Pink Salmon are introduced, and various activities on salmon are…

  4. Discovering System Health Anomalies Using Data Mining Techniques

    NASA Technical Reports Server (NTRS)

    Sriastava, Ashok, N.

    2005-01-01

    We present a data mining framework for the analysis and discovery of anomalies in high-dimensional time series of sensor measurements that would be found in an Integrated System Health Monitoring system. We specifically treat the problem of discovering anomalous features in the time series that may be indicative of a system anomaly, or in the case of a manned system, an anomaly due to the human. Identification of these anomalies is crucial to building stable, reusable, and cost-efficient systems. The framework consists of an analysis platform and new algorithms that can scale to thousands of sensor streams to discovers temporal anomalies. We discuss the mathematical framework that underlies the system and also describe in detail how this framework is general enough to encompass both discrete and continuous sensor measurements. We also describe a new set of data mining algorithms based on kernel methods and hidden Markov models that allow for the rapid assimilation, analysis, and discovery of system anomalies. We then describe the performance of the system on a real-world problem in the aircraft domain where we analyze the cockpit data from aircraft as well as data from the aircraft propulsion, control, and guidance systems. These data are discrete and continuous sensor measurements and are dealt with seamlessly in order to discover anomalous flights. We conclude with recommendations that describe the tradeoffs in building an integrated scalable platform for robust anomaly detection in ISHM applications.

  5. Discovering and visualizing indirect associations between biomedical concepts

    PubMed Central

    Tsuruoka, Yoshimasa; Miwa, Makoto; Hamamoto, Kaisei; Tsujii, Jun'ichi; Ananiadou, Sophia

    2011-01-01

    Motivation: Discovering useful associations between biomedical concepts has been one of the main goals in biomedical text-mining, and understanding their biomedical contexts is crucial in the discovery process. Hence, we need a text-mining system that helps users explore various types of (possibly hidden) associations in an easy and comprehensible manner. Results: This article describes FACTA+, a real-time text-mining system for finding and visualizing indirect associations between biomedical concepts from MEDLINE abstracts. The system can be used as a text search engine like PubMed with additional features to help users discover and visualize indirect associations between important biomedical concepts such as genes, diseases and chemical compounds. FACTA+ inherits all functionality from its predecessor, FACTA, and extends it by incorporating three new features: (i) detecting biomolecular events in text using a machine learning model, (ii) discovering hidden associations using co-occurrence statistics between concepts, and (iii) visualizing associations to improve the interpretability of the output. To the best of our knowledge, FACTA+ is the first real-time web application that offers the functionality of finding concepts involving biomolecular events and visualizing indirect associations of concepts with both their categories and importance. Availability: FACTA+ is available as a web application at http://refine1-nactem.mc.man.ac.uk/facta/, and its visualizer is available at http://refine1-nactem.mc.man.ac.uk/facta-visualizer/. Contact: tsuruoka@jaist.ac.jp PMID:21685059

  6. Who discovered the sylvian fissure?

    PubMed

    Collice, Massimo; Collice, Rosa; Riva, Alessandro

    2008-10-01

    Cerebral convolutions were unknown until the 17th century. A constant sulcus was not recognized until the mid-1600s; it was named "the fissure of Sylvius," after the person who had always been considered as the one who discovered it. It is commonly asserted that the first description of the lateral scissure was made by Caspar Bartholin, who attributed its discovery to Sylvius. However, this was not actually the case, as Caspar Bartholin died in 1629, whereas Sylvius started studying medicine in 1632. The description could have been made either by Caspar Bartholin's son Thomas or by Sylvius himself. Irrespective of the description's author, the key to the history of the lateral fissure is that it was first identified by Fabrici d'Acquapendente in 1600, 40 years before Sylvius' description. In one of the 300 colored plates (Tabulae Pictae) by Fabrici, the lateral fissure is perfectly depicted, as are the temporal convolutions. Therefore, even if it was an accidental discovery, Fabrici should be the one noted as having discovered the fissure. This article ends with a short history of the plates. They were painted in oil on paper and were thought to further a great work, the Theatrum Totius Animalis Fabricae, which was begun in 1591 and never completed or published. Only the colored illustrations of this project remain. These plates were forgotten for more than 200 years, until they were rediscovered by Giuseppe Sterzi in 1909. They are among the best examples of anatomic iconography in terms of innovation, accuracy, and artistic accomplishment.

  7. Updating strategies for isolating and discovering giant viruses.

    PubMed

    Khalil, Jacques Yaacoub Bou; Andreani, Julien; La Scola, Bernard

    2016-06-01

    Almost fifteen years ago, the discovery of Acanthamoeba polyphaga mimivirus, the first giant virus, changed how we define a virus. It was discovered incidentally in a process of isolating Legionella sp. from environmental samples in the context of pneumonia epidemics using a co-culture system with Acanthamoeba. Since then, much effort and improvement has been put into the original technique. In addition to the known families of Mimiviridae and Marseilleviridae, four new proposed families of giant viruses have been isolated: Pandoravirus, Pithovirus, Faustovirus and Mollivirus. Major improvements were based on enrichment systems, targeted use of antibiotics and high-throughput methods. The most recent development, using flow cytometry for isolation and presumptive identification systems, opens a path to large environmental surveys that may discover new giant virus families in new protozoa supports used for culture support. Copyright © 2016 Elsevier Ltd. All rights reserved.

  8. Boron Discovered in Ancient Habitable Mars Groundwater

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Gasda, Patrick

    Boron was recently discovered in calcium-sulfate veins on Mars using the ChemCam instrument on NASA’s Curiosity Mars Rover. This is the first Mars mission to detect boron on the Red Planet. Los Alamos Post-Doctoral Student Patrick Gasda explains how this discovery helps us better understand the timescale of habitability on Mars.

  9. Discover Presidential Log Cabins. Teacher's Discussion Guide.

    ERIC Educational Resources Information Center

    National Park Service (Dept. of Interior), Washington, DC.

    Discover Presidential Log Cabins is a set of materials designed to help educate 6-8 grade students about the significance of three log cabin sites occupied by George Washington, Ulysses Grant, Abraham Lincoln, and Theodore Roosevelt. This teacher's discussion guide is intended for use as part of a larger, comprehensive social studies program, and…

  10. DISCOVER AQ Research Plane Arrives

    NASA Image and Video Library

    2011-06-28

    A 117-foot P-3B NASA research aircraft is seen on the tarmac at Baltimore/Washington International Thurgood Marshall Airport, Tuesday, June 28, 2011, in Baltimore, Md. The aircraft is part of a month-long field campaign designed to improve satellite measurements of air pollution. The name of the experiment -- Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER -- AQ) -- is a mouthful, but its purpose is simple. Come July, the aircraft will be flying spirals over six ground stations in Maryland. Photo Credit: (NASA/Paul E. Alers)

  11. DISCOVER AQ Research Plane Arrives

    NASA Image and Video Library

    2011-06-28

    Pilots Shane Dover, left, and Mike Singer are seen on the flight deck of the P-3B NASA research aircraft at Baltimore/Washington International Thurgood Marshall Airport, Tuesday, June 28, 2011, in Baltimore, Md. The aircraft is part of a month-long field campaign designed to improve satellite measurements of air pollution. The name of the experiment -- Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER -- AQ) -- is a mouthful, but its purpose is simple. Come July, the aircraft will be flying spirals over six ground stations in Maryland. Photo Credit: (NASA/Paul E. Alers)

  12. The pearls of using real-world evidence to discover social groups

    NASA Astrophysics Data System (ADS)

    Cardillo, Raymond A.; Salerno, John J.

    2005-03-01

    In previous work, we introduced a new paradigm called Uni-Party Data Community Generation (UDCG) and a new methodology to discover social groups (a.k.a., community models) called Link Discovery based on Correlation Analysis (LDCA). We further advanced this work by experimenting with a corpus of evidence obtained from a Ponzi scheme investigation. That work identified several UDCG algorithms, developed what we called "Importance Measures" to compare the accuracy of the algorithms based on ground truth, and presented a Concept of Operations (CONOPS) that criminal investigators could use to discover social groups. However, that work used a rather small random sample of manually edited documents because the evidence contained far too many OCR and other extraction errors. Deferring the evidence extraction errors allowed us to continue experimenting with UDCG algorithms, but only used a small fraction of the available evidence. In attempt to discover techniques that are more practical in the near-term, our most recent work focuses on being able to use an entire corpus of real-world evidence to discover social groups. This paper discusses the complications of extracting evidence, suggests a method of performing name resolution, presents a new UDCG algorithm, and discusses our future direction in this area.

  13. Discovering frequently recurring movement sequences in team-sport athlete spatiotemporal data.

    PubMed

    Sweeting, Alice J; Aughey, Robert J; Cormack, Stuart J; Morgan, Stuart

    2017-12-01

    Athlete external load is typically analysed from predetermined movement thresholds. The combination of movement sequences and differences in these movements between playing positions is also currently unknown. This study developed a method to discover the frequently recurring movement sequences across playing position during matches. The external load of 12 international female netball athletes was collected by a local positioning system during four national-level matches. Velocity, acceleration and angular velocity were calculated from positional (X, Y) data, clustered via one-dimensional k-means and assigned a unique alphabetic label. Combinations of velocity, acceleration and angular velocity movement were compared using the Levenshtein distance and similarities computed by the longest common substring problem. The contribution of each movement sequence, according to playing position and relative to the wider data set, was then calculated via the Minkowski distance. A total of 10 frequently recurring combinations of movement were discovered, regardless of playing position. Only the wing attack, goal attack and goal defence playing positions are closely related. We developed a technique to discover the movement sequences, according to playing position, performed by elite netballers. This methodology can be extended to discover the frequently recurring movements within other team sports and across levels of competition.

  14. A strategy to discover new organizers identifies a putative heart organizer

    PubMed Central

    Anderson, Claire; Khan, Mohsin A. F.; Wong, Frances; Solovieva, Tatiana; Oliveira, Nidia M. M.; Baldock, Richard A.; Tickle, Cheryll; Burt, Dave W.; Stern, Claudio D.

    2016-01-01

    Organizers are regions of the embryo that can both induce new fates and impart pattern on other regions. So far, surprisingly few organizers have been discovered, considering the number of patterned tissue types generated during development. This may be because their discovery has relied on transplantation and ablation experiments. Here we describe a new approach, using chick embryos, to discover organizers based on a common gene expression signature, and use it to uncover the anterior intestinal portal (AIP) endoderm as a putative heart organizer. We show that the AIP can induce cardiac identity from non-cardiac mesoderm and that it can pattern this by specifying ventricular and suppressing atrial regional identity. We also uncover some of the signals responsible. The method holds promise as a tool to discover other novel organizers acting during development. PMID:27557800

  15. Dive and Discover : Expeditions to the Seafloor

    Science.gov Websites

    me a link other What is your highest level of education? -- please select -- K-12 student High School : Are you a teacher? Yes No Email: Your email will not be revealed to any third party, nor be used for Us | Contact © 2005 Dive and Discover is a registered trademark of Woods Hole Oceanographic

  16. DISCOVER AQ Research Plane Arrives

    NASA Image and Video Library

    2011-06-28

    WFF Pilots Mike Singer, left, and Shane Dover stand in front of the 117-foot P-3B NASA research aircraft on the tarmac at Baltimore/Washington International Thurgood Marshall Airport, Tuesday, June 28, 2011, in Baltimore, Md. The aircraft is part of a month-long field campaign designed to improve satellite measurements of air pollution. The name of the experiment -- Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER -- AQ) -- is a mouthful, but its purpose is simple. Come July, the aircraft will be flying spirals over six ground stations in Maryland. Photo Credit: (NASA/Paul E. Alers)

  17. Communicating Finnish Quietude: A Pedagogical Process for Discovering Implicit Cultural Meanings in Languages

    ERIC Educational Resources Information Center

    Berry, Michael; Carbaugh, Donal; Nurmikari-Berry, Marjatta

    2004-01-01

    This paper introduces a pedagogical approach to integrating intercultural communication into language learning. The focus is on the development of competence in discovering and interpreting cultural meanings when communicating in English as an international language. The analyses of data which students produced illustrates how discovering implicit…

  18. Discover Earth: Earth's Energy Budget or Can You Spare a Sun?

    NASA Technical Reports Server (NTRS)

    Gates, Tom; Peters, Dale E.; Steeley, Jeanne

    1999-01-01

    Discover Earth is a NASA-sponsored project for teachers of grades 5-12, designed to: enhance understanding of the Earth as an integrated system enhance the interdisciplinary approach to science instruction, and provide classroom materials that focus on those goals. Discover Earth is conducted by the Institute for Global Environmental Strategies in collaboration with Dr. Eric Barron, Director, Earth System Science Center, The Pennsylvania State University; and Dr. Robert Hudson, Chair, the Department of Meteorology, University of Maryland at College Park.

  19. Discovering loose group movement patterns from animal trajectories

    USGS Publications Warehouse

    Wang, Yuwei; Luo, Ze; Xiong, Yan; Prosser, Diann J.; Newman, Scott H.; Takekawa, John Y.; Yan, Baoping

    2015-01-01

    The technical advances of positioning technologies enable us to track animal movements at finer spatial and temporal scales, and further help to discover a variety of complex interactive relationships. In this paper, considering the loose gathering characteristics of the real-life groups' members during the movements, we propose two kinds of loose group movement patterns and corresponding discovery algorithms. Firstly, we propose the weakly consistent group movement pattern which allows the gathering of a part of the members and individual temporary leave from the whole during the movements. To tolerate the high dispersion of the group at some moments (i.e. to adapt the discontinuity of the group's gatherings), we further scheme the weakly consistent and continuous group movement pattern. The extensive experimental analysis and comparison with the real and synthetic data shows that the group pattern discovery algorithms proposed in this paper are similar to the the real-life frequent divergences of the members during the movements, can discover more complete memberships, and have considerable performance.

  20. Fast Ss-Ilm a Computationally Efficient Algorithm to Discover Socially Important Locations

    NASA Astrophysics Data System (ADS)

    Dokuz, A. S.; Celik, M.

    2017-11-01

    Socially important locations are places which are frequently visited by social media users in their social media lifetime. Discovering socially important locations provide several valuable information about user behaviours on social media networking sites. However, discovering socially important locations are challenging due to data volume and dimensions, spatial and temporal calculations, location sparseness in social media datasets, and inefficiency of current algorithms. In the literature, several studies are conducted to discover important locations, however, the proposed approaches do not work in computationally efficient manner. In this study, we propose Fast SS-ILM algorithm by modifying the algorithm of SS-ILM to mine socially important locations efficiently. Experimental results show that proposed Fast SS-ILM algorithm decreases execution time of socially important locations discovery process up to 20 %.

  1. Discovering Hidden Analogies in an Online Humanities Database.

    ERIC Educational Resources Information Center

    Cory, Kenneth A.

    1999-01-01

    Drawing upon an efficacious method for discovering previously unknown causes of medical syndromes and searching in the Humanities Index, an illuminating new humanities analogy between the epistemological ideas of Robert Frost and the ancient Greek philosopher Carneades was found by constructing a search statement in which proper names were coupled…

  2. Plant Biofilm Inhibitors to Discover Biofilm Genes

    DTIC Science & Technology

    2011-04-08

    REPORT Final Report for Plant Biofilm Inhibitors to Discover Biofilm Genes 14. ABSTRACT 16. SECURITY CLASSIFICATION OF: To control biofilms , we have...synthesized the natural biofilm inhibitor (5Z)-4-bromo-5-(bromomethylene) -3-butyl-2(5H)-furanone from the red alga Delisea pulchra and determined that...Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS biofilms , biofilm inhibitors Thomas K. Wood Texas Engineering

  3. Discovering graphical Granger causality using the truncating lasso penalty

    PubMed Central

    Shojaie, Ali; Michailidis, George

    2010-01-01

    Motivation: Components of biological systems interact with each other in order to carry out vital cell functions. Such information can be used to improve estimation and inference, and to obtain better insights into the underlying cellular mechanisms. Discovering regulatory interactions among genes is therefore an important problem in systems biology. Whole-genome expression data over time provides an opportunity to determine how the expression levels of genes are affected by changes in transcription levels of other genes, and can therefore be used to discover regulatory interactions among genes. Results: In this article, we propose a novel penalization method, called truncating lasso, for estimation of causal relationships from time-course gene expression data. The proposed penalty can correctly determine the order of the underlying time series, and improves the performance of the lasso-type estimators. Moreover, the resulting estimate provides information on the time lag between activation of transcription factors and their effects on regulated genes. We provide an efficient algorithm for estimation of model parameters, and show that the proposed method can consistently discover causal relationships in the large p, small n setting. The performance of the proposed model is evaluated favorably in simulated, as well as real, data examples. Availability: The proposed truncating lasso method is implemented in the R-package ‘grangerTlasso’ and is freely available at http://www.stat.lsa.umich.edu/∼shojaie/ Contact: shojaie@umich.edu PMID:20823316

  4. Discovering disease-associated genes in weighted protein-protein interaction networks

    NASA Astrophysics Data System (ADS)

    Cui, Ying; Cai, Meng; Stanley, H. Eugene

    2018-04-01

    Although there have been many network-based attempts to discover disease-associated genes, most of them have not taken edge weight - which quantifies their relative strength - into consideration. We use connection weights in a protein-protein interaction (PPI) network to locate disease-related genes. We analyze the topological properties of both weighted and unweighted PPI networks and design an improved random forest classifier to distinguish disease genes from non-disease genes. We use a cross-validation test to confirm that weighted networks are better able to discover disease-associated genes than unweighted networks, which indicates that including link weight in the analysis of network properties provides a better model of complex genotype-phenotype associations.

  5. Symmetry compression method for discovering network motifs.

    PubMed

    Wang, Jianxin; Huang, Yuannan; Wu, Fang-Xiang; Pan, Yi

    2012-01-01

    Discovering network motifs could provide a significant insight into systems biology. Interestingly, many biological networks have been found to have a high degree of symmetry (automorphism), which is inherent in biological network topologies. The symmetry due to the large number of basic symmetric subgraphs (BSSs) causes a certain redundant calculation in discovering network motifs. Therefore, we compress all basic symmetric subgraphs before extracting compressed subgraphs and propose an efficient decompression algorithm to decompress all compressed subgraphs without loss of any information. In contrast to previous approaches, the novel Symmetry Compression method for Motif Detection, named as SCMD, eliminates most redundant calculations caused by widespread symmetry of biological networks. We use SCMD to improve three notable exact algorithms and two efficient sampling algorithms. Results of all exact algorithms with SCMD are the same as those of the original algorithms, since SCMD is a lossless method. The sampling results show that the use of SCMD almost does not affect the quality of sampling results. For highly symmetric networks, we find that SCMD used in both exact and sampling algorithms can help get a remarkable speedup. Furthermore, SCMD enables us to find larger motifs in biological networks with notable symmetry than previously possible.

  6. Discovering Sequence Motifs with Arbitrary Insertions and Deletions

    PubMed Central

    Frith, Martin C.; Saunders, Neil F. W.; Kobe, Bostjan; Bailey, Timothy L.

    2008-01-01

    Biology is encoded in molecular sequences: deciphering this encoding remains a grand scientific challenge. Functional regions of DNA, RNA, and protein sequences often exhibit characteristic but subtle motifs; thus, computational discovery of motifs in sequences is a fundamental and much-studied problem. However, most current algorithms do not allow for insertions or deletions (indels) within motifs, and the few that do have other limitations. We present a method, GLAM2 (Gapped Local Alignment of Motifs), for discovering motifs allowing indels in a fully general manner, and a companion method GLAM2SCAN for searching sequence databases using such motifs. glam2 is a generalization of the gapless Gibbs sampling algorithm. It re-discovers variable-width protein motifs from the PROSITE database significantly more accurately than the alternative methods PRATT and SAM-T2K. Furthermore, it usefully refines protein motifs from the ELM database: in some cases, the refined motifs make orders of magnitude fewer overpredictions than the original ELM regular expressions. GLAM2 performs respectably on the BAliBASE multiple alignment benchmark, and may be superior to leading multiple alignment methods for “motif-like” alignments with N- and C-terminal extensions. Finally, we demonstrate the use of GLAM2 to discover protein kinase substrate motifs and a gapped DNA motif for the LIM-only transcriptional regulatory complex: using GLAM2SCAN, we identify promising targets for the latter. GLAM2 is especially promising for short protein motifs, and it should improve our ability to identify the protein cleavage sites, interaction sites, post-translational modification attachment sites, etc., that underlie much of biology. It may be equally useful for arbitrarily gapped motifs in DNA and RNA, although fewer examples of such motifs are known at present. GLAM2 is public domain software, available for download at http://bioinformatics.org.au/glam2. PMID:18437229

  7. Discover Primary Science: Developing Primary Science in Ireland

    ERIC Educational Resources Information Center

    Horner, Margaret; Palmer, Marion

    2007-01-01

    "Discover Primary Science" is a major project in primary science education in Ireland. In 2006-2007 it involves 2400 primary schools, 45 host centres, and two government departments. However, it started out as a local initiative taken by one state agency in 2002 involving four Institutes of Technology and 40 primary schools. The aim of…

  8. [Breast tumor revealed by a gastric metastasis discovered incidentally].

    PubMed

    Moussaoui, Aziz El; Assi, Fadi; Bental, Abdeslam

    2016-01-01

    The gastric metastasis of breast cancer are rare, and their discovery is difficult, because the symptoms is often unspecific or even absent. We report an original case of ductal carcinoma of the breast revealed by a gastric metastasis discovered incidentally.

  9. 32 CFR 644.533 - Contamination discovered after return of land to owner, or sale.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 4 2010-07-01 2010-07-01 true Contamination discovered after return of land to owner, or sale. 644.533 Section 644.533 National Defense Department of Defense (Continued) DEPARTMENT OF... Other Contamination from Proposed Excess Land and Improvements § 644.533 Contamination discovered after...

  10. Discovering drugs for the treatment of Ebola virus

    DTIC Science & Technology

    2017-08-04

    Discovering drugs for the treatment of Ebola virus Sandra L. Bixler, Allen J. Duplantier and Sina Bavari Address United States Army Medical...with the recent West African outbreak resulting in over 11,000 deaths. This review provides a summary of the status of drug discovery and development...disease, including small molecules, immunotherapeutics, host factors, and clinical disease management options. Introduction Drug development for

  11. Discover Summer School: Evaluation Report and Executive Summary

    ERIC Educational Resources Information Center

    Torgerson, David; Torgerson, Carole; Jefferson, Laura; Buckley, Hannah; Ainsworth, Hannah; Heaps, Clare; Mitchell, Natasha

    2014-01-01

    The Discover Summer School was a four-week programme which aimed to improve the reading and writing skills of children during the summer between Year 6 and Year 7. The programme was targeted at pupils who had been predicted to achieve below Level 4b in English by the end of Key Stage 2. Pupils meeting the eligibility criteria for the study, and…

  12. Re-discovering ancient wheat varieties as functional foods.

    PubMed

    Cooper, Raymond

    2015-07-01

    With the gluten-free food market worth almost $1.6 bn in 2011, there is every reason for renewed interest in ancient grains. This resurgent interest is expressed in re-discovering ancient varieties as functional foods. In particular, people affected by celiac disease have to avoid all gluten in their diet and several ancient grains may offer an important alternative.

  13. The Use of a Performance Assessment for Identifying Gifted Lebanese Students: Is DISCOVER Effective?

    ERIC Educational Resources Information Center

    Sarouphim, Ketty M.

    2009-01-01

    The purpose of this study was to investigate the effectiveness of DISCOVER, a performance- based assessment in identifying gifted Lebanese students. The sample consisted of 248 students (121 boys, 127 girls) from Grades 3-5 at two private schools in Beirut, Lebanon. Students were administered DISCOVER and the Raven Standard Progressive Matrices…

  14. Screening individual hybridomas by microengraving to discover monoclonal antibodies

    PubMed Central

    Ogunniyi, Adebola O; Story, Craig M; Papa, Eliseo; Guillen, Eduardo; Love, J Christopher

    2014-01-01

    The demand for monoclonal antibodies (mAbs) in biomedical research is significant, but the current methodologies used to discover them are both lengthy and costly. Consequently, the diversity of antibodies available for any particular antigen remains limited. Microengraving is a soft lithographic technique that provides a rapid and efficient alternative for discovering new mAbs. This protocol describes how to use microengraving to screen mouse hybridomas to establish new cell lines producing unique mAbs. Single cells from a polyclonal population are isolated into an array of microscale wells (~105 cells per screen). The array is then used to print a protein microarray, where each element contains the antibodies captured from individual wells. The antibodies on the microarray are screened with antigens of interest, and mapped to the corresponding cells, which are then recovered from their microwells by micromanipulation. Screening and retrieval require approximately 1–3 d (9–12 d including the steps for preparing arrays of microwells). PMID:19528952

  15. [Fahr syndrome discovered following a bacterial meningitis].

    PubMed

    Sbai, H; Smail, L; Hamdani, S; Essatara, Y; Harrandou, M; Khatouf, M; Kanjaa, N

    2008-05-01

    Fahr's disease refers to a rare syndrome characterized by symmetrical and bilateral intracranial calcifications. The basal ganglia and dentate nucleus are the most common site of involvement and most cases present extrapyramidal symptoms. This disease is mostly associated with a phosphocalcic metabolism disorder, especially to hypoparathyroidism. The authors report a case of Fahr syndrome (FS) discovered when a young patient with hypocalcemia and bacterial meningitis had a cerebral CT scan disclosing intracerebral calcifications. She fully recovered after both meningitis and hypocalcemia were treated.

  16. "My Memory's Back!" Inclusive Learning Disability Research Using Ethics, Oral History and Digital Storytelling

    ERIC Educational Resources Information Center

    Manning, Corinne

    2010-01-01

    The following article outlines the methodological approach used to include people with learning disabilities as active participants in an oral history produced in Australia. The history sought to document life inside Kew Cottages, Australia's oldest and largest specialised institution for people with learning disabilities. This work furthers…

  17. Photographs and Committees: Activities That Help Students Discover Permutations and Combinations.

    ERIC Educational Resources Information Center

    Szydlik, Jennifer Earles

    2000-01-01

    Presents problem situations that support students when discovering the multiplication principle, permutations, combinations, Pascal's triangle, and relationships among those objects in a concrete context. (ASK)

  18. Yes, Aboriginal Australians can and did discover the variability of Betelgeuse

    NASA Astrophysics Data System (ADS)

    Schaefer, Bradley E.

    2018-04-01

    Recently, a widely publicized claim has been made that the Aboriginal Australians discovered the variability of the red star Betelgeuse in the modern Orion, plus the variability of two other prominent red stars: Aldebaran and Antares. This result has excited the usual healthy skepticism, with questions about whether any untrained peoples can discover the variability and whether such a discovery is likely to be placed into lore and transmitted for long periods of time. Here, I am offering an independent evaluation, based on broad experience with naked-eye sky viewing and astro-history. I find that it is easy for inexperienced observers to detect the variability of Betelgeuse over its range in brightness from V = 0.0 to V = 1.3, for example in noticing from season-to-season that the star varies from significantly brighter than Procyon to being greatly fainter than Procyon. Further, indigenous peoples in the Southern Hemisphere inevitably kept watch on the prominent red star, so it is inevitable that the variability of Betelgeuse was discovered many times over during the last 65 millennia. The processes of placing this discovery into a cultural context (in this case, put into morality stories) and the faithful transmission for many millennia is confidently known for the Aboriginal Australians in particular. So this shows that the whole claim for a changing Betelgeuse in the Aboriginal Australian lore is both plausible and likely. Given that the discovery and transmission is easily possible, the real proof is that the Aboriginal lore gives an unambiguous statement that these stars do indeed vary in brightness, as collected by many ethnographers over a century ago from many Aboriginal groups. So I strongly conclude that the Aboriginal Australians could and did discover the variability of Betelgeuse, Aldebaran, and Antares.

  19. ToO observations of a newly discovered interstellar ('Oumuamua-like) object

    NASA Astrophysics Data System (ADS)

    Trilling, David; Hora, Joseph; Mommert, Michael; Farnocchia, Davide; Chesley, Steve; Emery, Joshua; Fazio, Giovanni; Harris, Alan; Mueller, Migo; Smith, Howard

    2018-05-01

    We propose a Target of Opportunity (ToO) program to observe a newly discovered interstellar asteroid. This program is modeled on our DDT observations of 'Oumuamua. We will only trigger this ToO observation if an object is discovered with sufficient lead time to be scheduled for Spitzer observations; if the object will be within the Spitzer observability cone; and if the object is likely to be bright enough to be detected. From the proposed observations we will measure the diameter and albedo of the object - likely the only way that either of those properties will be determined. The result will provide a critical second data point for studies of planetary system formation as traced by these interstellar interlopers.

  20. Spectroscopic Classifications with Magellan of 7 Supernovae Discovered by DES

    NASA Astrophysics Data System (ADS)

    Blanchard, P. K.; Challis, P.; Drout, M.; Kirshner, R.; Brown, P. J.; Krisciunas, K.; Suntzeff, N.; D'Andrea, C.; Nichol, R.; Papadopoulos, A.; Smith, M.; Sullivan, M.; Maartens, R.; Gupta, R.; Kovacs, E.; Kuhlmann, S.; Spinka, H.; Ahn, E.; Finley, D. A.; Frieman, J.; Marriner, J.; Wester, W.; Aldering, G.; Kim, A. G.; Thomas, R. C.; Barbary, K.; Bloom, J. S.; Goldstein, D.; Nugent, P.; Perlmutter, S.; Foley, R. J.; Castander, F. J.; Desai, S.; Paech, K.; Smith, R. C.; Schubnell, M.; Kessler, R.; Scolnic, D.; Covarrubias, R. A.; Brout, D. J.; Fischer, J. A.; Gladney, L.; March, M.; Sako, M.; Wolf, R. C.

    2015-01-01

    We report optical spectroscopy of supernova candidates discovered by the Dark Energy Survey. The spectra (425-945 nm) were obtained using IMACS on the 6.5m Baade telescope at the Las Campanas Observatory on Dec 19, 2014.

  1. Lysenko affair and Polish botany.

    PubMed

    Köhler, Piotr

    2011-01-01

    This article describes the slight impact of Lysenkoism upon Polish botany. I begin with an account of the development of plant genetics in Poland, as well as the attitude of scientists and the Polish intelligentsia toward Marxist philosophy prior to the World War II. Next I provide a short history of the introduction and demise of Lysenkoism in Polish science, with a focus on events in botany, in context with key events in Polish science from 1939 to 1958. The article outlines the little effects of Lysenkoism upon botanists and their research, as well as how botanists for the most part rejected what was often termed the "new biology." My paper shows that though Lysenko's theories received political support, and were actively promoted by a small circle of scientists and Communist party activists, they were never accepted by most botanists. Once the political climate in Poland altered after the events of 1956, Lysenko's theories were immediately abandoned.

  2. New hot spot on Io discovered by NIMS during orbit C9

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The Near-Infrared Mapping Spectrometer (NIMS) on Galileo observes Io on nearly every orbit as part of a program monitoring the level of volcanic activity on this moon. Io is the most volcanically active body in the Solar System and NIMS has discovered many new volcanoes. The latest addition to the inventory was discovered during orbit C9, at Shamash Patera, located on the side of Io facing away from Jupiter. The image above shows, on the left, the portion of Io imaged during this observation as seen by Voyager. The image on the right shows Io at 4.99 microns (in the infrared). Some of the disk is in darkness, making the identification of these hot spots easier. New names have been given to some of the newly discovered features. The hot spots Isum, Mulungu and Tupan have been active since their discovery during the G1 orbit. Zamama, an active region between Prometheus and Isum, was discovered during G1. It was active through orbit E4 but has since faded considerably.

    This image was taken on June 28, 1997, at a resolution of 302 km/pixel.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov.

  3. Discovering Communicable Models from Earth Science Data

    NASA Technical Reports Server (NTRS)

    Schwabacher, Mark; Langley, Pat; Potter, Christopher; Klooster, Steven; Torregrosa, Alicia

    2002-01-01

    This chapter describes how we used regression rules to improve upon results previously published in the Earth science literature. In such a scientific application of machine learning, it is crucially important for the learned models to be understandable and communicable. We recount how we selected a learning algorithm to maximize communicability, and then describe two visualization techniques that we developed to aid in understanding the model by exploiting the spatial nature of the data. We also report how evaluating the learned models across time let us discover an error in the data.

  4. (4015) 1979 VA: 'Missing Link' Discovered

    NASA Technical Reports Server (NTRS)

    Helin, Eleanor F.

    1993-01-01

    Apollo Asteroid (4015) 1979 VA was discovered in November of 1979 by Helin at Palomar with the 0.46m Schmidt Telescope. It's orbital elements immediately indicated a possible cometary origin. With an extremely eccentric orbit, it approaches the orbit of Jupiter (at the time, the largest 'Q', aphelion, of any known near-Earth asteroid). Physical observations acquired during the discovery apparition suggested that it was carbonaceous in nature. Research into prediscovery observations of Near-Earth Asteroids (Bowell et. al., 1992) has located Palomar Sky Survey photographic plates taken in 1949 observations of (4015) 1979 VA, not as an asteroid, but rather a small cometary image (IAU Circular Nos. 5585 and 5586, August 13, 1992)...

  5. Discovering network behind infectious disease outbreak

    NASA Astrophysics Data System (ADS)

    Maeno, Yoshiharu

    2010-11-01

    Stochasticity and spatial heterogeneity are of great interest recently in studying the spread of an infectious disease. The presented method solves an inverse problem to discover the effectively decisive topology of a heterogeneous network and reveal the transmission parameters which govern the stochastic spreads over the network from a dataset on an infectious disease outbreak in the early growth phase. Populations in a combination of epidemiological compartment models and a meta-population network model are described by stochastic differential equations. Probability density functions are derived from the equations and used for the maximal likelihood estimation of the topology and parameters. The method is tested with computationally synthesized datasets and the WHO dataset on the SARS outbreak.

  6. Discovering objects in a blood recipient information system.

    PubMed

    Qiu, D; Junghans, G; Marquardt, K; Kroll, H; Mueller-Eckhardt, C; Dudeck, J

    1995-01-01

    Application of object-oriented (OO) methodologies has been generally considered as a solution to the problem of improving the software development process and managing the so-called software crisis. Among them, object-oriented analysis (OOA) is the most essential and is a vital prerequisite for the successful use of other OO methodologies. Though there are already a good deal of OOA methods published, the most important aspect common to all these methods: discovering objects classes truly relevant to the given problem domain, has remained a subject to be intensively researched. In this paper, using the successful development of a blood recipient information system as an example, we present our approach which is based on the conceptual framework of responsibility-driven OOA. In the discussion, we also suggest that it may be inadequate to simply attribute the software crisis to the waterfall model of the software development life-cycle. We are convinced that the real causes for the failure of some software and information systems should be sought in the methodologies used in some crucial phases of the software development process. Furthermore, a software system can also fail if object classes essential to the problem domain are not discovered, implemented and visualized, so that the real-world situation cannot be faithfully traced by it.

  7. Discovering Your Radiant Self: A Transpersonal Approach to Expressing Your Potential.

    ERIC Educational Resources Information Center

    Klimek, Paula; Canfield, Jack

    1979-01-01

    Presents a process combining a drawing experience with exercises learned in psychosynthesis training to help people discover what transpersonal qualities are attempting to manifest themselves through their personalities. (Author/BEF)

  8. NASA's Kepler Mission Discovers First Earth-size Planet in Habitable Zone of Another Star (Reporter Package)

    NASA Image and Video Library

    2014-04-17

    NASA's Kepler mission has discovered the first Earth-size planet orbiting in the habitable zone of a star outside our solar system. The newly discovered planet is called Kepler-186f and is about 10 percent larger than Earth.

  9. NI-DiscoverHistory: Meta-narrative for Explanation Bounding

    DTIC Science & Technology

    2014-01-01

    this research during the summer of 2014. 4 References [1] D. Herman, Storytelling and the Sciences of Mind. MIT Press, 2013. [2] M. Mateas and P...ASM Project NI-DiscoverHistory: Meta-narrative for Explanation Bounding Tory S. Anderson1, Swaroop Vattam2, and David Aha3 1Grad Student Researcher ...Georgia Institute of Technology; torys.anderson@gatech.edu 2NRC postdoctoral Researcher ; Navy Center for Applied Research in AI; Naval Research

  10. Discovering Theorems in Abstract Algebra Using the Software "GAP"

    ERIC Educational Resources Information Center

    Blyth, Russell D.; Rainbolt, Julianne G.

    2010-01-01

    A traditional abstract algebra course typically consists of the professor stating and then proving a sequence of theorems. As an alternative to this classical structure, the students could be expected to discover some of the theorems even before they are motivated by classroom examples. This can be done by using a software system to explore a…

  11. Discovering Network Structure Beyond Communities

    NASA Astrophysics Data System (ADS)

    Nishikawa, Takashi; Motter, Adilson E.

    2011-11-01

    To understand the formation, evolution, and function of complex systems, it is crucial to understand the internal organization of their interaction networks. Partly due to the impossibility of visualizing large complex networks, resolving network structure remains a challenging problem. Here we overcome this difficulty by combining the visual pattern recognition ability of humans with the high processing speed of computers to develop an exploratory method for discovering groups of nodes characterized by common network properties, including but not limited to communities of densely connected nodes. Without any prior information about the nature of the groups, the method simultaneously identifies the number of groups, the group assignment, and the properties that define these groups. The results of applying our method to real networks suggest the possibility that most group structures lurk undiscovered in the fast-growing inventory of social, biological, and technological networks of scientific interest.

  12. OT discovered by MASTER during Fermi Trigger Num 430645968 follow up observations follow up observations

    NASA Astrophysics Data System (ADS)

    Tiurina, N.; Balanutsa, P.; Denisenko, D.; Lipunov, V.; Gorbovskoy, E.; Kornilov, V.; Chazov, V.; Kuznetsov, A.; Vladimirov, V.; Yecheistov, V.; Shumkov, V.; Ivanov, K.; Yazev, S.; Budnev, N.; Konstantinov, E.; Chuvalaev, O.; Poleshchuk, V.; Gress, O.; Parkhomenko, A.; Tlatov, A.; Dormidontov, D.; Senik, V.; Yurkov, V.; Sergienko, Y.; Varda, D.; Sinyakov, E.; Gabovich, A.; Krushinsky, V.; Zalozhnih, I.; Popov, A.; Bourdanov, A.; Podvorotny, P.; Shurpakov, S.; Levato, H.; Saffe, C.; Mallamaci, C.; Lopez, C.; Podest, F.

    2014-08-01

    MASTER-Tunka auto-detection system during follow-up Fermi Trigger 430645968 observations (GCN 16745) discovered OT source at: MASTER-Tunka auto-detection system discovered MASTER OT J230448.20+324534.1 at (RA, Dec) = 23h 04m 48.20s +32d 45m 34.1s on 2014-08-25.62245 UT.

  13. Should the annular tendon of the eye be named 'annulus of Zinn' or 'of Valsalva'?

    PubMed

    Zampieri, Fabio; Marrone, Daniela; Zanatta, Alberto

    2015-02-01

    The annular tendon is commonly named 'annulus of Zinn', from the German anatomist and botanist Johann Gottfried Zinn (1727-1759) who described this structure in his Descriptio anatomica oculi humani (Anatomical Description of the Human Eye, 1755). This structure, however, had been previously discovered not by Zinn, but by Antonio Maria Valsalva (1666-1723) some decades before the publication of Zinn, in his Dissertatio anatomica prima and Dissertatio anatomica altera (First and Second Anatomical Dissertations), inside Valsalva's Opera omnia published in 1740. We advance that this structure could be re-named such as 'annulus of Valsalva-Zinn' because Valsalva, even making a mistake in its functional interpretation, first described this anatomical structure. Likewise, Valsalva, with his discovery, advanced a revolutionary idea for that time on the usefulness of anatomy for clinic and pathology. © 2014 Acta Ophthalmologica Scandinavica Foundation. Published by John Wiley & Sons Ltd.

  14. Let Students Discover an Important Physical Property of a Slinky

    ERIC Educational Resources Information Center

    Gash, Philip

    2016-01-01

    This paper describes a simple experiment that lets first-year physics and engineering students discover an important physical property of a Slinky. The restoring force for the fundamental oscillation frequency is provided only by those coils between the support and the Slinky center of mass.

  15. Line drawing of anomaly discovered in redesigned shuttle motor nozzle

    NASA Technical Reports Server (NTRS)

    1987-01-01

    Line drawing titled 'DM-9 Case-to-Nozzle Joint' shows anomaly discovered in redesigned shuttle motor nozzle. The second full-duration test firing of NASA's redesigned Space Shuttle solid rocket motor (SRM), designated DM-9, was conducted 12-23-87 at Morton Thiokol's Wasatch facility in Utah. A post-test examination of the motor has revealed an anomaly in one nozzle component. Material was discovered missing from the nozzle outer boot ring, a large carbon phenolic composite ring used to anchor one end of the flexible boot that allows the nozzle to move and 'steer' the vehicle. About one-third of the missing 160 degrees of missing ring material was found adjacent to the forward nozzle section inside the motor. This diagram shows the location of the nozzle joint on an assembled SRM, and points out the shaded location of the outer boot ring that circles the motor within the nozzle joint.

  16. Thymolipoma combined with hyperthyroidism discovered by neurological symptoms.

    PubMed

    Takahashi, Hidenobu; Harada, Masahiko; Kimura, Masakazu; Kato, Harubumi

    2007-04-01

    Thymolipomas are rare slow-growing mediastinal thymic neoplasms. Most cases are asymptomatic and are sometimes discovered as a huge mass on chest x-ray films. A few cases have been discovered during examinations for other diseases. We report the second case of thymolipoma combined with hyperthyroidism in the English language literature. Neurological symptoms suddenly appeared in a 45-year-old woman. Central nervous system disorder was suggested but no significant abnormalities were found on brain MR nor were there any neurological signs. Several months later, neurological and systemic examinations on admission revealed hyperthyroidism and an anterior mediastinal tumor, 9.0x5.0x3.0 cm in size on chest CT films. Despite treatment of hyperthyroidism by medication, her neurological symptoms remained. Neurologists recommended resection of the mediastinal tumor. Malignancy could not be ruled out because of the irregularity of the tumor appearance on contrast-enhanced chest CT. Furthermore, the tumor appeared to be attached to the ascending aorta, so cytological and/or pathological diagnosis by CT-guided needle biopsy before operation were contraindicated. Extended thymectomy was performed in May 2005. The pathological diagnosis was benign thymolipoma consisting of mature fatty tissue and thymic tissue structures with Hassall's corpuscles. Her neurological symptoms seemed slightly but not markedly improved. The relationship between thymolipoma and hyperthyroidism is still unknown.

  17. Discover 4-H Clubs: The Essential Resource for 4-H

    ERIC Educational Resources Information Center

    MacArthur, Stacey; Nelson, Cindy; Brower, Naomi; Memmott, Margie; Peterson, Gaelynn

    2016-01-01

    Obstacles facing new 4-H volunteers include time constraints and difficulty finding project-specific information, resources, and opportunities available for club members. As a solution to these obstacles and an aid for assisting volunteers in becoming confident in delivering information to youth, content experts produced Discover 4-H Clubs, a…

  18. Simultaneously Discovering and Localizing Common Objects in Wild Images.

    PubMed

    Wang, Zhenzhen; Yuan, Junsong

    2018-09-01

    Motivated by the recent success of supervised and weakly supervised common object discovery, in this paper, we move forward one step further to tackle common object discovery in a fully unsupervised way. Generally, object co-localization aims at simultaneously localizing objects of the same class across a group of images. Traditional object localization/detection usually trains specific object detectors which require bounding box annotations of object instances, or at least image-level labels to indicate the presence/absence of objects in an image. Given a collection of images without any annotations, our proposed fully unsupervised method is to simultaneously discover images that contain common objects and also localize common objects in corresponding images. Without requiring to know the total number of common objects, we formulate this unsupervised object discovery as a sub-graph mining problem from a weighted graph of object proposals, where nodes correspond to object proposals, and edges represent the similarities between neighbouring proposals. The positive images and common objects are jointly discovered by finding sub-graphs of strongly connected nodes, with each sub-graph capturing one object pattern. The optimization problem can be efficiently solved by our proposed maximal-flow-based algorithm. Instead of assuming that each image contains only one common object, our proposed solution can better address wild images where each image may contain multiple common objects or even no common object. Moreover, our proposed method can be easily tailored to the task of image retrieval in which the nodes correspond to the similarity between query and reference images. Extensive experiments on PASCAL VOC 2007 and Object Discovery data sets demonstrate that even without any supervision, our approach can discover/localize common objects of various classes in the presence of scale, view point, appearance variation, and partial occlusions. We also conduct broad

  19. Pancreatic sarcoidosis discovered during Whipple procedure.

    PubMed

    Cook, Jonathan; Spees, Tanner; Telefus, Phillip; Ranaudo, Jeffrey M; Carryl, Stephen; Xiao, Philip

    2013-04-04

    Pancreatic sarcoidosis is a rare variant of systemic sarcoidosis, with cases described in literature as recently as January 2010. We present here a case of pancreatic involvement with non-caseating granulomas discovered on laparotomy in a patient with a preoperative diagnosis of pancreatic carcinoma. Computer tomography scan without contrast revealed a well-marginated smooth-shaped tumor in the head of the pancreas morphologically consistent with malignancy. During Whipple procedure, the mass was found to be a large lymph node that contained numerous non-caseating granulomas. Radiologically and clinically, non-caseating granulomas of the pancreas are often misdiagnosed as malignant tumor. Special attention given to this differential diagnosis by surgeons, pathologists and clinicians can avoid misdiagnosis and unnecessary treatment. Published by Oxford University Press and JSCR Publishing Ltd. All rights reserved. © The Author 2013.

  20. Fortuitously discovered liver lesions.

    PubMed

    Dietrich, Christoph F; Sharma, Malay; Gibson, Robert N; Schreiber-Dietrich, Dagmar; Jenssen, Christian

    2013-06-07

    The fortuitously discovered liver lesion is a common problem. Consensus might be expected in terms of its work-up, and yet there is none. This stems in part from the fact that there is no preventive campaign involving the early detection of liver tumors other than for patients with known liver cirrhosis and oncological patients. The work-up (detection and differential diagnosis) of liver tumors comprises theoretical considerations, history, physical examination, laboratory tests, standard ultrasound, Doppler ultrasound techniques, contrast-enhanced ultrasound (CEUS), computed tomography and magnetic resonance imaging, as well as image-guided biopsy. CEUS techniques have proved to be the most pertinent method; these techniques became part of the clinical routine about 10 years ago in Europe and Asia and are used for a variety of indications in daily clinical practice. CEUS is in many cases the first and also decisive technical intervention for detecting and characterizing liver tumors. This development is reflected in many CEUS guidelines, e.g., in the European Federation of Societies for Ultrasound in Medicine and Biology (EFSUMB) guidelines 2004, 2008 and 2012 as well as the recently published World Federation for Ultrasound in Medicine and Biology-EFSUMB guidelines 2012. This article sets out considerations for making a structured work-up of incidental liver tumors feasible.

  1. NASA's Kepler Mission Discovers Multiple Planets Orbiting Twin Suns (Reporter Pkg)

    NASA Image and Video Library

    2012-08-28

    NASA's Kepler mission has discovered the first transiting circumbinary system -- multiple planets orbiting two suns -- 4,900 light-years from Earth, in the constellation Cygnus, proving that more than one planets can form and survive in orbit around a binary star.

  2. Pressed flowers: notions of indigenous and alien vegetation in South Africa's Western Cape, c. 1902-1945.

    PubMed

    Pooley, Simon

    2010-01-01

    In the early twentieth century, botanists in South Africa's Western Cape sought urgently to popularise and protect the region's unique indigenous Fynbos flora. Plants imported from the 1840s, some of which proved invasive, became a physical and symbolic focus for their advocacy. The botanists' efforts resonated with political attempts to forge a common white South African national identity that drew on notions of landscape and the indigenous flora for symbolism and that consciously exploited the politically integrative potential of the new science of ecology. Introduced by overseas-trained experts, ecological theory was, however, inappropriate for the local flora, and had unfortunate consequences for the scientifically-informed research and management particularly of the fire-maintained Fynbos. While botanists and conservationists were united in defending the local flora against invasive introduced plants, they drew distinctions between what was 'indigenous' and what was 'natural' that further complicated their attitudes to the local flora. These historical debates illuminate agendas and policies on introduced ('alien') and indigenous flora in the region today.

  3. The evolution of screening.

    PubMed

    Gray, J A

    2001-01-01

    Botany is usually considered to be the gentlest of sciences with botanists being regarded as people who study relatively safe specimens, compared with, for example, anthropologists or microbiologists. However, botanists have their moments, particularly when collecting new species. The great botanists of the eighteenth and nineteenth centuries risked their lives in collecting and bringing back species, which we now take for granted, and Robert Brown was one of these adventurers, a young Scot who accompanied Sir Joseph Banks to New Holland. It was not, however, for his adventurous lifestyle that Brown is remembered but for his startling observation of the movements of pollen grains on a microscope slide. He noted that the pollen grains were in perpetual agitated motion, without purpose or direction but full of energy. This motion, called Brownian motion, arises from the movement of molecules, and Brownian motion is the term that has been applied to much of healthcare, including many screening programmes, which have in the past been marked more by the amount of energy and activity than by a clear sense of direction or positive achievement.

  4. Chandra Discovers Cosmic Cannonball

    NASA Astrophysics Data System (ADS)

    2007-11-01

    One of the fastest moving stars ever seen has been discovered with NASA's Chandra X-ray Observatory. This cosmic cannonball is challenging theories to explain its blistering speed. Astronomers used Chandra to observe a neutron star, known as RX J0822-4300, over a period of about five years. During that span, three Chandra observations clearly show the neutron star moving away from the center of the Puppis A supernova remnant. This remnant is the stellar debris field created during the same explosion in which the neutron star was created about 3700 years ago. Chandra X-ray Image of RX J0822-4300 in Puppis A Chandra X-ray Image of RX J0822-4300 in Puppis A By combining how far it has moved across the sky with its distance from Earth, astronomers determined the neutron star is moving at over 3 million miles per hour. At this rate, RX J0822-4300 is destined to escape from the Milky Way after millions of years, even though it has only traveled about 20 light years so far. "This star is moving at 3 million miles an hour, but it's so far away that the apparent motion we see in five years is less than the height of the numerals in the date on a penny, seen from the length of a football field," said Frank Winkler of Middlebury College in Vermont. "It's remarkable, and a real testament to the power of Chandra, that such a tiny motion can be measured." Labeled Image of RX J0822-4300 in Puppis A Labeled Image of RX J0822-4300 in Puppis A "Just after it was born, this neutron star got a one-way ticket out of the Galaxy," said co-author Robert Petre of NASA's Goddard Space Flight Center in Greenbelt, Md. "Astronomers have seen other stars being flung out of the Milky Way, but few as fast as this." So-called hypervelocity stars have been previously discovered shooting out of the Milky Way with speeds around one million miles per hour. One key difference between RX J0822-4300 and these other reported galactic escapees is the source of their speed. The hypervelocity stars are

  5. A Bayesian Method for Evaluating and Discovering Disease Loci Associations

    PubMed Central

    Jiang, Xia; Barmada, M. Michael; Cooper, Gregory F.; Becich, Michael J.

    2011-01-01

    Background A genome-wide association study (GWAS) typically involves examining representative SNPs in individuals from some population. A GWAS data set can concern a million SNPs and may soon concern billions. Researchers investigate the association of each SNP individually with a disease, and it is becoming increasingly commonplace to also analyze multi-SNP associations. Techniques for handling so many hypotheses include the Bonferroni correction and recently developed Bayesian methods. These methods can encounter problems. Most importantly, they are not applicable to a complex multi-locus hypothesis which has several competing hypotheses rather than only a null hypothesis. A method that computes the posterior probability of complex hypotheses is a pressing need. Methodology/Findings We introduce the Bayesian network posterior probability (BNPP) method which addresses the difficulties. The method represents the relationship between a disease and SNPs using a directed acyclic graph (DAG) model, and computes the likelihood of such models using a Bayesian network scoring criterion. The posterior probability of a hypothesis is computed based on the likelihoods of all competing hypotheses. The BNPP can not only be used to evaluate a hypothesis that has previously been discovered or suspected, but also to discover new disease loci associations. The results of experiments using simulated and real data sets are presented. Our results concerning simulated data sets indicate that the BNPP exhibits both better evaluation and discovery performance than does a p-value based method. For the real data sets, previous findings in the literature are confirmed and additional findings are found. Conclusions/Significance We conclude that the BNPP resolves a pressing problem by providing a way to compute the posterior probability of complex multi-locus hypotheses. A researcher can use the BNPP to determine the expected utility of investigating a hypothesis further. Furthermore, we

  6. What Is Going on Inside the Arrows? Discovering the Hidden Springs in Causal Models

    PubMed Central

    Murray-Watters, Alexander; Glymour, Clark

    2016-01-01

    Using Gebharter's (2014) representation, we consider aspects of the problem of discovering the structure of unmeasured sub-mechanisms when the variables in those sub-mechanisms have not been measured. Exploiting an early insight of Sober's (1998), we provide a correct algorithm for identifying latent, endogenous structure—sub-mechanisms—for a restricted class of structures. The algorithm can be merged with other methods for discovering causal relations among unmeasured variables, and feedback relations between measured variables and unobserved causes can sometimes be learned. PMID:27313331

  7. Raman spectroscopic analysis of dragon's blood resins-basis for distinguishing between Dracaena(Convallariaceae), Daemonorops(Palmae) and Croton(Euphorbiaceae).

    PubMed

    Edwards, Howell G M; de Oliveira, Luiz F C; Prendergast, Hew D V

    2004-02-01

    "Dragon[prime or minute]s blood" is the name applied to the deep-red coloured resin obtained from various plants. The original source in Roman times, used by many cultures and esteemed for its depth of colour and mystical association, was the dragon tree Dracaena cinnabari(Convallariaceae), found only on the Indian Ocean island of Socotra, (Yemen). Additional sources emerged later, including another species of Dracaena, D. draco, from the Canary Islands and Madeira, and species in the genera Daemonorops(Palmae) from South East Asia and Croton(Euphorbiaceae) from tropical parts of both the New and Old Worlds. In this study, examples of dragon's blood resins from the Economic Botany Collections at the Royal Botanic Gardens, Kew, dating from 1851 to 1993, have been analysed non-destructively using Raman spectroscopy. The Raman spectra of well-documented, provenanced specimens have been used to establish the source of specimens of questionable or unknown origin. It has also been possible from the Raman spectra to indicate whether processing of the resins has been undertaken in the preparation of the specimens before their deposition at Kew.

  8. Discovering Communicable Scientific Knowledge from Spatio-Temporal Data

    NASA Technical Reports Server (NTRS)

    Schwabacher, Mark; Langley, Pat; Norvig, Peter (Technical Monitor)

    2001-01-01

    This paper describes how we used regression rules to improve upon a result previously published in the Earth science literature. In such a scientific application of machine learning, it is crucially important for the learned models to be understandable and communicable. We recount how we selected a learning algorithm to maximize communicability, and then describe two visualization techniques that we developed to aid in understanding the model by exploiting the spatial nature of the data. We also report how evaluating the learned models across time let us discover an error in the data.

  9. Discovering herbal functional groups of traditional Chinese medicine.

    PubMed

    He, Ping; Deng, Ke; Liu, Zhihai; Liu, Delin; Liu, Jun S; Geng, Zhi

    2012-03-30

    For the traditional Chinese medicine (TCM), a prescription for a patient often contains several herbs. Some herbs are often used together in prescriptions, and these herbs can be considered as a functional group. In this paper, we propose an approach for discovering herbal functional groups from a large set of prescriptions recorded in TCM books. These functional groups are allowed to overlap with each other. Our approach is validated with a simulation study and applied to a data set containing thousands of TCM prescriptions. Copyright © 2011 John Wiley & Sons, Ltd.

  10. Interactive Gaussian Graphical Models for Discovering Depth Trends in ChemCam Data

    NASA Astrophysics Data System (ADS)

    Oyen, D. A.; Komurlu, C.; Lanza, N. L.

    2018-04-01

    Interactive Gaussian graphical models discover surface compositional features on rocks in ChemCam targets. Our approach visualizes shot-to-shot relationships among LIBS observations, and identifies the wavelengths involved in the trend.

  11. Discovering weighted patterns in intron sequences using self-adaptive harmony search and back-propagation algorithms.

    PubMed

    Huang, Yin-Fu; Wang, Chia-Ming; Liou, Sing-Wu

    2013-01-01

    A hybrid self-adaptive harmony search and back-propagation mining system was proposed to discover weighted patterns in human intron sequences. By testing the weights under a lazy nearest neighbor classifier, the numerical results revealed the significance of these weighted patterns. Comparing these weighted patterns with the popular intron consensus model, it is clear that the discovered weighted patterns make originally the ambiguous 5SS and 3SS header patterns more specific and concrete.

  12. Discovering Sentinel Rules for Business Intelligence

    NASA Astrophysics Data System (ADS)

    Middelfart, Morten; Pedersen, Torben Bach

    This paper proposes the concept of sentinel rules for multi-dimensional data that warns users when measure data concerning the external environment changes. For instance, a surge in negative blogging about a company could trigger a sentinel rule warning that revenue will decrease within two months, so a new course of action can be taken. Hereby, we expand the window of opportunity for organizations and facilitate successful navigation even though the world behaves chaotically. Since sentinel rules are at the schema level as opposed to the data level, and operate on data changes as opposed to absolute data values, we are able to discover strong and useful sentinel rules that would otherwise be hidden when using sequential pattern mining or correlation techniques. We present a method for sentinel rule discovery and an implementation of this method that scales linearly on large data volumes.

  13. Transit Photometry of Recently Discovered Hot Jupiters

    NASA Astrophysics Data System (ADS)

    McCloat, Sean Peter

    The University of North Dakota Space Studies Internet Observatory was used to observe the transits of hot Jupiter exoplanets. Targets for this research were selected from the list of currently confirmed exoplanets using the following criteria: radius > 0.5 Rjup, discovered since 2011, orbiting stars with apparent magnitude > 13. Eleven transits were observed distributed across nine targets with the goal of performing differential photometry for parameter refinement and transit timing variation analysis if data quality allowed. Data quality was ultimately insufficient for robust parameter refinement, but tentative calculations of mid-transit times were made of three of the observed transits. Mid-transit times for WASP-103b and WASP-48b were consistent with predictions and the existing database.

  14. Collecting genetic variation on a small island

    Treesearch

    S. Kallow; C. Trivedi

    2017-01-01

    Genetic variation is the most powerful factor in ensuring the long term success of trees and forests in times of change. In order to protect against loss of genetic variation from threats, including pests and diseases and climate change, the Royal Botanic Gardens, Kew, is developing a national tree seed collection for the United Kingdom. This paper...

  15. An early sophisticated East Polynesian voyaging canoe discovered on New Zealand's coast

    PubMed Central

    Johns, Dilys A.; Irwin, Geoffrey J.; Sung, Yun K.

    2014-01-01

    The colonization of the islands of East Polynesia was a remarkable episode in the history of human migration and seafaring. We report on an ocean-sailing canoe dating from close to that time. A large section of a complex composite canoe was discovered recently at Anaweka on the New Zealand coast. The canoe dates to approximately A.D. 1400 and was contemporary with continuing interisland voyaging. It was built in New Zealand as an early adaptation to a new environment, and a sea turtle carved on its hull makes symbolic connections with wider Polynesian culture and art. We describe the find and identify and radiocarbon date the construction materials. We present a reconstruction of the whole canoe and compare it to another early canoe previously discovered in the Society Islands. PMID:25267657

  16. Discovering Weighted Patterns in Intron Sequences Using Self-Adaptive Harmony Search and Back-Propagation Algorithms

    PubMed Central

    Wang, Chia-Ming; Liou, Sing-Wu

    2013-01-01

    A hybrid self-adaptive harmony search and back-propagation mining system was proposed to discover weighted patterns in human intron sequences. By testing the weights under a lazy nearest neighbor classifier, the numerical results revealed the significance of these weighted patterns. Comparing these weighted patterns with the popular intron consensus model, it is clear that the discovered weighted patterns make originally the ambiguous 5SS and 3SS header patterns more specific and concrete. PMID:23737711

  17. Discovering Self: Childbearing Adolescents' Maternal Identity.

    PubMed

    Macintosh, Janelle; Callister, Lynn Clark

    2015-01-01

    Adolescent pregnancy and motherhood have long been a topic of interest for many healthcare professionals. However, there are limited data on how childbearing adolescents incorporate motherhood identity into their sense of self. The purpose of this study was to explore how childbearing adolescents perceive motherhood as becoming part of their personal identity. This qualitative study using ethnographic data collection involved 7 months of observation, interaction, and interviews. Data were collected from nine expectant adolescents during in-depth interviews. All participants were patients at a teen mother and child clinic staffed by certified nurse midwives and a pediatrician. Narrative content analysis revealed the overall theme of discovering self, with three major themes: confirming the pregnancy, the loss of my body, and imagining my child in my arms. Adolescent mothers may need assistance to construct their maternal identity in order to strengthen self-perceptions and improve maternal/child outcomes.

  18. Discovering Multimodal Behavior in Ms. Pac-Man through Evolution of Modular Neural Networks.

    PubMed

    Schrum, Jacob; Miikkulainen, Risto

    2016-03-12

    Ms. Pac-Man is a challenging video game in which multiple modes of behavior are required: Ms. Pac-Man must escape ghosts when they are threats and catch them when they are edible, in addition to eating all pills in each level. Past approaches to learning behavior in Ms. Pac-Man have treated the game as a single task to be learned using monolithic policy representations. In contrast, this paper uses a framework called Modular Multi-objective NEAT (MM-NEAT) to evolve modular neural networks. Each module defines a separate behavior. The modules are used at different times according to a policy that can be human-designed (i.e. Multitask) or discovered automatically by evolution. The appropriate number of modules can be fixed or discovered using a genetic operator called Module Mutation. Several versions of Module Mutation are evaluated in this paper. Both fixed modular networks and Module Mutation networks outperform monolithic networks and Multitask networks. Interestingly, the best networks dedicate modules to critical behaviors (such as escaping when surrounded after luring ghosts near a power pill) that do not follow the customary division of the game into chasing edible and escaping threat ghosts. The results demonstrate that MM-NEAT can discover interesting and effective behavior for agents in challenging games.

  19. Discovering Multimodal Behavior in Ms. Pac-Man through Evolution of Modular Neural Networks

    PubMed Central

    Schrum, Jacob; Miikkulainen, Risto

    2015-01-01

    Ms. Pac-Man is a challenging video game in which multiple modes of behavior are required: Ms. Pac-Man must escape ghosts when they are threats and catch them when they are edible, in addition to eating all pills in each level. Past approaches to learning behavior in Ms. Pac-Man have treated the game as a single task to be learned using monolithic policy representations. In contrast, this paper uses a framework called Modular Multi-objective NEAT (MM-NEAT) to evolve modular neural networks. Each module defines a separate behavior. The modules are used at different times according to a policy that can be human-designed (i.e. Multitask) or discovered automatically by evolution. The appropriate number of modules can be fixed or discovered using a genetic operator called Module Mutation. Several versions of Module Mutation are evaluated in this paper. Both fixed modular networks and Module Mutation networks outperform monolithic networks and Multitask networks. Interestingly, the best networks dedicate modules to critical behaviors (such as escaping when surrounded after luring ghosts near a power pill) that do not follow the customary division of the game into chasing edible and escaping threat ghosts. The results demonstrate that MM-NEAT can discover interesting and effective behavior for agents in challenging games. PMID:27030803

  20. PubMed on Tap: discovering design principles for online information delivery to handheld computers.

    PubMed

    Hauser, Susan E; Demner-Fushman, Dina; Ford, Glenn; Thoma, George R

    2004-01-01

    Online access to biomedical information from handheld computers will be a valuable adjunct to other popular medical applications if information delivery systems are designed with handheld computers in mind. The goal of this project is to discover design principles to facilitate practitioners' access to online medical information at the point-of-care. A prototype system was developed to serve as a testbed for this research. Using the testbed, an initial evaluation has yielded several user interface design principles. Continued research is expected to discover additional user interface design principles as well as guidelines for results organization and system performance

  1. Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences.

    PubMed

    Defrance, Matthieu; Janky, Rekin's; Sand, Olivier; van Helden, Jacques

    2008-01-01

    This protocol explains how to discover functional signals in genomic sequences by detecting over- or under-represented oligonucleotides (words) or spaced pairs thereof (dyads) with the Regulatory Sequence Analysis Tools (http://rsat.ulb.ac.be/rsat/). Two typical applications are presented: (i) predicting transcription factor-binding motifs in promoters of coregulated genes and (ii) discovering phylogenetic footprints in promoters of orthologous genes. The steps of this protocol include purging genomic sequences to discard redundant fragments, discovering over-represented patterns and assembling them to obtain degenerate motifs, scanning sequences and drawing feature maps. The main strength of the method is its statistical ground: the binomial significance provides an efficient control on the rate of false positives. In contrast with optimization-based pattern discovery algorithms, the method supports the detection of under- as well as over-represented motifs. Computation times vary from seconds (gene clusters) to minutes (whole genomes). The execution of the whole protocol should take approximately 1 h.

  2. "Discovering the Cell": An Educational Game about Cell and Molecular Biology

    ERIC Educational Resources Information Center

    Spiegel, Carolina N.; Alves, Gutemberg G.; Cardona, Tania da S.; Melim, Leandra M. C.; Luz, Mauricio R. M. P.; Araujo-Jorge, Tania C.; Henriques-Pons, Andrea

    2008-01-01

    The role of games within education becomes clearer as students become more active and are able to take decisions, solve problems and react to the results of those decisions. The educational board game "Discovering the Cell" ("Celula Adentro"), is based on problem-solving learning. This investigative game attempts to stimulate…

  3. DISCOVER-AQ SJV Surface Measurements and Initial Comparisons with Photochemical Model Simulations

    EPA Science Inventory

    NASA’s DISCOVER-AQ (Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality) campaign studied the air quality throughout California’s San Joaquin Valley (SJV) during January and February of 2013. The SJV is a...

  4. Astronomers Discover Fastest-Spinning Pulsar

    NASA Astrophysics Data System (ADS)

    2006-01-01

    Astronomers using the National Science Foundation's Robert C. Byrd Green Bank Telescope have discovered the fastest-spinning neutron star ever found, a 20-mile-diameter superdense pulsar whirling faster than the blades of a kitchen blender. Their work yields important new information about the nature of one of the most exotic forms of matter known in the Universe. Pulsar Graphic Pulsars Are Spinning Neutron Stars CREDIT: Bill Saxton, NRAO/AUI/NSF (Click on image for larger version) "We believe that the matter in neutron stars is denser than an atomic nucleus, but it is unclear by how much. Our observations of such a rapidly rotating star set a hard upper limit on its size, and hence on how dense the star can be.," said Jason Hessels, a graduate student at McGill University in Montreal. Hessels and his colleagues presented their findings to the American Astronomical Society's meeting in Washington, DC. Pulsars are spinning neutron stars that sling "lighthouse beams" of radio waves or light around as they spin. A neutron star is what is left after a massive star explodes at the end of its "normal" life. With no nuclear fuel left to produce energy to offset the stellar remnant's weight, its material is compressed to extreme densities. The pressure squeezes together most of its protons and electrons to form neutrons; hence, the name "neutron star." "Neutron stars are incredible laboratories for learning about the physics of the fundamental particles of nature, and this pulsar has given us an important new limit," explained Scott Ransom, an astronomer at the National Radio Astronomy Observatory and one of Hessels' collaborators on this work. The scientists discovered the pulsar, named PSR J1748-2446ad, in a globular cluster of stars called Terzan 5, located some 28,000 light-years from Earth in the constellation Sagittarius. The newly-discovered pulsar is spinning 716 times per second, or at 716 Hertz (Hz), readily beating the previous record of 642 Hz from a pulsar

  5. Discovering Pediatric Asthma Phenotypes on the Basis of Response to Controller Medication Using Machine Learning.

    PubMed

    Ross, Mindy K; Yoon, Jinsung; van der Schaar, Auke; van der Schaar, Mihaela

    2018-01-01

    Pediatric asthma has variable underlying inflammation and symptom control. Approaches to addressing this heterogeneity, such as clustering methods to find phenotypes and predict outcomes, have been investigated. However, clustering based on the relationship between treatment and clinical outcome has not been performed, and machine learning approaches for long-term outcome prediction in pediatric asthma have not been studied in depth. Our objectives were to use our novel machine learning algorithm, predictor pursuit (PP), to discover pediatric asthma phenotypes on the basis of asthma control in response to controller medications, to predict longitudinal asthma control among children with asthma, and to identify features associated with asthma control within each discovered pediatric phenotype. We applied PP to the Childhood Asthma Management Program study data (n = 1,019) to discover phenotypes on the basis of asthma control between assigned controller therapy groups (budesonide vs. nedocromil). We confirmed PP's ability to discover phenotypes using the Asthma Clinical Research Network/Childhood Asthma Research and Education network data. We next predicted children's asthma control over time and compared PP's performance with that of traditional prediction methods. Last, we identified clinical features most correlated with asthma control in the discovered phenotypes. Four phenotypes were discovered in both datasets: allergic not obese (A + /O - ), obese not allergic (A - /O + ), allergic and obese (A + /O + ), and not allergic not obese (A - /O - ). Of the children with well-controlled asthma in the Childhood Asthma Management Program dataset, we found more nonobese children treated with budesonide than with nedocromil (P = 0.015) and more obese children treated with nedocromil than with budesonide (P = 0.008). Within the obese group, more A + /O + children's asthma was well controlled with nedocromil than with budesonide (P = 0.022) or with placebo

  6. Discovering, Indexing and Interlinking Information Resources

    PubMed Central

    Celli, Fabrizio; Keizer, Johannes; Jaques, Yves; Konstantopoulos, Stasinos; Vudragović, Dušan

    2015-01-01

    The social media revolution is having a dramatic effect on the world of scientific publication. Scientists now publish their research interests, theories and outcomes across numerous channels, including personal blogs and other thematic web spaces where ideas, activities and partial results are discussed. Accordingly, information systems that facilitate access to scientific literature must learn to cope with this valuable and varied data, evolving to make this research easily discoverable and available to end users. In this paper we describe the incremental process of discovering web resources in the domain of agricultural science and technology. Making use of Linked Open Data methodologies, we interlink a wide array of custom-crawled resources with the AGRIS bibliographic database in order to enrich the user experience of the AGRIS website. We also discuss the SemaGrow Stack, a query federation and data integration infrastructure used to estimate the semantic distance between crawled web resources and AGRIS. PMID:26834982

  7. Michael Maier--nine newly discovered letters.

    PubMed

    Lenke, Nils; Roudet, Nicolas; Tilton, Hereward

    2014-02-01

    The authors provide a transcription, translation, and evaluation of nine newly discovered letters from the alchemist Michael Maier (1568-1622) to Gebhardt Johann von Alvensleben (1576-1631), a noble landholder in the vicinity of Magdeburg. Stemming from the final year of his life, this correspondence casts new light on Maier's biography, detailing his efforts to secure patronage amid the financial crisis of the early Thirty Years' War. While his ill-fated quest to perfect potable gold continued to form the central focus of his patronage suits, Maier also offered his services in several arts that he had condemned in his printed works, namely astrology and "supernatural" magic. Remarks concerning his previously unknown acquaintance with Heinrich Khunrath call for a re-evaluation of Maier's negotiation of the discursive boundaries between Lutheran orthodoxy and Paracelsianism. The letters also reveal Maier's substantial contribution to a work previously ascribed solely to the English alchemist Francis Anthony.

  8. Improving the Interpretability of Classification Rules Discovered by an Ant Colony Algorithm: Extended Results.

    PubMed

    Otero, Fernando E B; Freitas, Alex A

    2016-01-01

    Most ant colony optimization (ACO) algorithms for inducing classification rules use a ACO-based procedure to create a rule in a one-at-a-time fashion. An improved search strategy has been proposed in the cAnt-Miner[Formula: see text] algorithm, where an ACO-based procedure is used to create a complete list of rules (ordered rules), i.e., the ACO search is guided by the quality of a list of rules instead of an individual rule. In this paper we propose an extension of the cAnt-Miner[Formula: see text] algorithm to discover a set of rules (unordered rules). The main motivations for this work are to improve the interpretation of individual rules by discovering a set of rules and to evaluate the impact on the predictive accuracy of the algorithm. We also propose a new measure to evaluate the interpretability of the discovered rules to mitigate the fact that the commonly used model size measure ignores how the rules are used to make a class prediction. Comparisons with state-of-the-art rule induction algorithms, support vector machines, and the cAnt-Miner[Formula: see text] producing ordered rules are also presented.

  9. Combined mining: discovering informative knowledge in complex data.

    PubMed

    Cao, Longbing; Zhang, Huaifeng; Zhao, Yanchang; Luo, Dan; Zhang, Chengqi

    2011-06-01

    Enterprise data mining applications often involve complex data such as multiple large heterogeneous data sources, user preferences, and business impact. In such situations, a single method or one-step mining is often limited in discovering informative knowledge. It would also be very time and space consuming, if not impossible, to join relevant large data sources for mining patterns consisting of multiple aspects of information. It is crucial to develop effective approaches for mining patterns combining necessary information from multiple relevant business lines, catering for real business settings and decision-making actions rather than just providing a single line of patterns. The recent years have seen increasing efforts on mining more informative patterns, e.g., integrating frequent pattern mining with classifications to generate frequent pattern-based classifiers. Rather than presenting a specific algorithm, this paper builds on our existing works and proposes combined mining as a general approach to mining for informative patterns combining components from either multiple data sets or multiple features or by multiple methods on demand. We summarize general frameworks, paradigms, and basic processes for multifeature combined mining, multisource combined mining, and multimethod combined mining. Novel types of combined patterns, such as incremental cluster patterns, can result from such frameworks, which cannot be directly produced by the existing methods. A set of real-world case studies has been conducted to test the frameworks, with some of them briefed in this paper. They identify combined patterns for informing government debt prevention and improving government service objectives, which show the flexibility and instantiation capability of combined mining in discovering informative knowledge in complex data.

  10. Discovering the plates boundaries in the Mediterranean sea

    NASA Astrophysics Data System (ADS)

    Marinelli, Maurizio

    2017-04-01

    During the 8th class the students learn geology. We analyze the earth's layers, the earthquakes, the volcanoes and other natural phenomena like subduction and orogeny. We start with a global study but our goal is to focus on the crust to discover the plates boundaries, particularly the boundary between Eurasian and African Plate in the Mediterranean sea. It's very simple for the students to discover all the information using the Internet or the science book, but I want to make with them an exploration of earth science with the help of the natural phenomena we studied during the year. We connect with Istituto Nazionale di Geofisica e Vulcanologia ( http://www.ingv.it/en/ ) where we can find a map with the earthquakes happened in the last years in Italy and in the Mediterranean sea and the list of the main volcanoes. In this way we can draw a map of the mediterranean plates and we can talk about the past and the future of the Mediterranean sea, Europe and Africa based on our maps and on the Alps orogeny. Using youtube we can have a confirm of our hypothesis about the future of the Mediterranean sea (https://www.youtube.com/watch?v=uGcDed4xVD4 ). A good observation for the students is given by the fact that we live in Europe but actually we stay on the African plate. The boundary is 5 km north of our school and we can go and visit the place where it is possible to see the different height of the two plates.

  11. Discovering functional modules by topic modeling RNA-Seq based toxicogenomic data.

    PubMed

    Yu, Ke; Gong, Binsheng; Lee, Mikyung; Liu, Zhichao; Xu, Joshua; Perkins, Roger; Tong, Weida

    2014-09-15

    Toxicogenomics (TGx) endeavors to elucidate the underlying molecular mechanisms through exploring gene expression profiles in response to toxic substances. Recently, RNA-Seq is increasingly regarded as a more powerful alternative to microarrays in TGx studies. However, realizing RNA-Seq's full potential requires novel approaches to extracting information from the complex TGx data. Considering read counts as the number of times a word occurs in a document, gene expression profiles from RNA-Seq are analogous to a word by document matrix used in text mining. Topic modeling aiming at to discover the latent structures in text corpora would be helpful to explore RNA-Seq based TGx data. In this study, topic modeling was applied on a typical RNA-Seq based TGx data set to discover hidden functional modules. The RNA-Seq based gene expression profiles were transformed into "documents", on which latent Dirichlet allocation (LDA) was used to build a topic model. We found samples treated by the compounds with the same modes of actions (MoAs) could be clustered based on topic similarities. The topic most relevant to each cluster was identified as a "marker" topic, which was interpreted by gene enrichment analysis with MoAs then confirmed by compound and pathways associations mined from literature. To further validate the "marker" topics, we tested topic transferability from RNA-Seq to microarrays. The RNA-Seq based gene expression profile of a topic specifically associated with peroxisome proliferator-activated receptors (PPAR) signaling pathway was used to query samples with similar expression profiles in two different microarray data sets, yielding accuracy of about 85%. This proof-of-concept study demonstrates the applicability of topic modeling to discover functional modules in RNA-Seq data and suggests a valuable computational tool for leveraging information within TGx data in RNA-Seq era.

  12. Medicinal benefits of marine invertebrates: sources for discovering natural drug candidates.

    PubMed

    De Zoysa, Mahanama

    2012-01-01

    Marine invertebrates are one of the major groups of organisms, which could be diversified under the major taxonomic groups of Porifera, Cnidaria, Mollusca, Arthropoda, Echinodermata, and many other minor phyla. To date, range of medicinal benefits and a significant number of marine natural products (MNPs) have been discovered from marine invertebrates. Seafood diet from edible marine invertebrates such as mollusks and crustaceans has been linked with various medicinal benefits to improve human health. Among marine invertebrates, spongers from phylum Porifera is the most dominant group responsible for discovering large number of MNPs, which have been used as template to develop therapeutic drugs. MNPs isolated from invertebrates have shown wide range of therapeutic properties including antimicrobial, antioxidant, antihypertensive, anticoagulant, anticancer, anti-inflammatory, wound healing and immune modulator, and other medicinal effects. Therefore, marine invertebrates are rich sources of chemical diversity and health benefits for developing drug candidates, cosmetics, nutritional supplements, and molecular probes that can be supported to increase the healthy life span of human. Copyright © 2012 Elsevier Inc. All rights reserved.

  13. An Empire's Extract: Chemical Manipulations of Cinchona Bark in the Eighteenth-Century Spanish Atlantic World.

    PubMed

    Crawford, Matthew James

    2014-01-01

    In 1790, the Spanish Crown sent a "botanist-chemist" to South America to implement production of a chemical extract made from cinchona bark, a botanical medicament from the Andes used throughout the Atlantic World to treat malarial fevers. Even though the botanist-chemist's efforts to produce the extract failed, this episode offers important insight into the role of chemistry in the early modern Atlantic World. Well before the Spanish Crown tried to make it a tool of empire, chemistry provided a vital set of techniques that circulated among a variety of healers, who used such techniques to make botanical medicaments useful and intelligible in new ways.

  14. Mutations, associated with early-onset Alzheimer’s disease, discovered in Asian countries

    PubMed Central

    Bagyinszky, Eva; Youn, Young Chul; An, Seong Soo A; Kim, SangYun

    2016-01-01

    Alzheimer’s disease (AD), the most common form of senile dementia, is a genetically complex disorder. In most Asian countries, the population and the number of AD patients are growing rapidly, and the genetics of AD has been extensively studied, except in Japan. However, recent studies have been started to investigate the genes and mutations associated with AD in Korea, the People’s Republic of China, and Malaysia. This review describes all of the known mutations in three early-onset AD (EOAD) causative genes (APP, PSEN1, and PSEN2) that were discovered in Asian countries. Most of the EOAD-associated mutations have been detected in PSEN1, and several novel PSEN1 mutations were recently identified in patients from various parts of the world, including Asia. Until 2014, no PSEN2 mutations were found in Asian patients; however, emerging studies from Korea and the People’s Republic of China discovered probably pathogenic PSEN2 mutations. Since several novel mutations were discovered in these three genes, we also discuss the predictions on their pathogenic nature. This review briefly summarizes genome-wide association studies of late-onset AD and the genes that might be associated with AD in Asian countries. Standard sequencing is a widely used method, but it has limitations in terms of time, cost, and efficacy. Next-generation sequencing strategies could facilitate genetic analysis and association studies. Genetic testing is important for the accurate diagnosis and for understanding disease-associated pathways and might also improve disease therapy and prevention. PMID:27799753

  15. How to See a Recently Discovered Supernova

    ScienceCinema

    Nugent, Peter

    2017-12-12

    Berkeley Lab scientist Peter Nugent discusses a recently discovered supernova that is closer to Earth — approximately 21 million light-years away — than any other of its kind in a generation. Astronomers believe they caught the supernova within hours of its explosion, a rare feat made possible with a specialized survey telescope and state-of-the-art computational tools. The finding of such a supernova so early and so close has energized the astronomical community as they are scrambling to observe it with as many telescopes as possible, including the Hubble Space Telescope. More info on how to see it: http://newscenter.lbl.gov/feature-stories/2011/08/31/glimpse-cosmic-explosion/ News release: http://newscenter.lbl.gov/feature-stories/2011/08/25/supernova/

  16. How to See a Recently Discovered Supernova

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nugent, Peter

    2011-08-31

    Berkeley Lab scientist Peter Nugent discusses a recently discovered supernova that is closer to Earth — approximately 21 million light-years away — than any other of its kind in a generation. Astronomers believe they caught the supernova within hours of its explosion, a rare feat made possible with a specialized survey telescope and state-of-the-art computational tools. The finding of such a supernova so early and so close has energized the astronomical community as they are scrambling to observe it with as many telescopes as possible, including the Hubble Space Telescope. More info on how to see it: http://newscenter.lbl.gov/feature-stories/2011/08/31/glimpse-cosmic-explosion/ News release:more » http://newscenter.lbl.gov/feature-stories/2011/08/25/supernova/« less

  17. A comparison of the IGBP DISCover and University of Maryland 1 km global land cover products

    USGS Publications Warehouse

    Hansen, M.C.; Reed, B.

    2000-01-01

    Two global 1 km land cover data sets derived from 1992-1993 Advanced Very High Resolution Radiometer (AVHRR) data are currently available, the International Geosphere-Biosphere Programme Data and Information System (IGBP-DIS) DISCover and the University of Maryland (UMd) 1 km land cover maps. This paper makes a preliminary comparison of the methodologies and results of the two products. The DISCover methodology employed an unsupervised clustering classification scheme on a per-continent basis using 12 monthly maximum NDVI composites as inputs. The UMd approach employed a supervised classification tree method in which temporal metrics derived from all AVHRR bands and the NDVI were used to predict class membership across the entire globe. The DISCover map uses the IGBP classification scheme, while the UMd map employs a modified IGBP scheme minus the classes of permanent wetlands, cropland/natural vegetation mosaic and ice and snow. Global area totals of aggregated vegetation types are very similar and have a per-pixel agreement of 74%. For tall versus short/no vegetation, the per-pixel agreement is 84%. For broad vegetation types, core areas map similarly, while transition zones around core areas differ significantly. This results in high regional variability between the maps. Individual class agreement between the two 1 km maps is 49%. Comparison of the maps at a nominal 0.5 resolution with two global ground-based maps shows an improvement of thematic concurrency of 46% when viewing average class agreement. The absence of the cropland mosaic class creates a difficulty in comparing the maps, due to its significant extent in the DISCover map. The DISCover map, in general, has more forest, while the UMd map has considerably more area in the intermediate tree cover classes of woody savanna/ woodland and savanna/wooded grassland.

  18. Discovering the Art of Mathematics: Using String Art to Investigate Calculus

    ERIC Educational Resources Information Center

    von Renesse, Christine; Ecke, Volker

    2016-01-01

    One goal of our Discovering the Art of Mathematics project is to empower students in the liberal arts to become confident creators of art and imaginative creators of mathematics. In this paper, we describe our experience with using string art to guide liberal arts students in exploring ideas of calculus. We provide excerpts from our inquiry-based…

  19. Evaluation of the Discover Drug Education Curriculum for Grades K-4.

    ERIC Educational Resources Information Center

    Adams, Ronald D.; Butler, Joan M.

    A major purpose of this study was to establish and test a procedure for evaluating drug education curricula that allows for a more objective view of the effectiveness of drug education materials and the instructional delivery system. A major focus of the study was to determine the extent to which the Discover Curriculum affected student outcomes.…

  20. Artificial Intelligence and NASA Data Used to Discover Eighth Planet Circling Distant Star

    NASA Image and Video Library

    2017-12-12

    Our solar system now is tied for most number of planets around a single star, with the recent discovery of an eighth planet circling Kepler-90, a Sun-like star 2,545 light years from Earth. The planet was discovered in data from NASA’s Kepler space telescope. The newly-discovered Kepler-90i -- a sizzling hot, rocky planet that orbits its star once every 14.4 days -- was found by researchers from Google and The University of Texas at Austin using machine learning. Machine learning is an approach to artificial intelligence in which computers “learn.” In this case, computers learned to identify planets by finding in Kepler data instances where the telescope recorded signals from planets beyond our solar system, known as exoplanets. Video Credit: NASA Ames Research Center / Google

  1. Using in Vitro Evolution and Whole Genome Analysis To Discover Next Generation Targets for Antimalarial Drug Discovery

    PubMed Central

    2018-01-01

    Although many new anti-infectives have been discovered and developed solely using phenotypic cellular screening and assay optimization, most researchers recognize that structure-guided drug design is more practical and less costly. In addition, a greater chemical space can be interrogated with structure-guided drug design. The practicality of structure-guided drug design has launched a search for the targets of compounds discovered in phenotypic screens. One method that has been used extensively in malaria parasites for target discovery and chemical validation is in vitro evolution and whole genome analysis (IVIEWGA). Here, small molecules from phenotypic screens with demonstrated antiparasitic activity are used in genome-based target discovery methods. In this Review, we discuss the newest, most promising druggable targets discovered or further validated by evolution-based methods, as well as some exceptions. PMID:29451780

  2. GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data.

    PubMed

    Schulz, Tizian; Stoye, Jens; Doerr, Daniel

    2018-05-08

    Hi-C sequencing offers novel, cost-effective means to study the spatial conformation of chromosomes. We use data obtained from Hi-C experiments to provide new evidence for the existence of spatial gene clusters. These are sets of genes with associated functionality that exhibit close proximity to each other in the spatial conformation of chromosomes across several related species. We present the first gene cluster model capable of handling spatial data. Our model generalizes a popular computational model for gene cluster prediction, called δ-teams, from sequences to graphs. Following previous lines of research, we subsequently extend our model to allow for several vertices being associated with the same label. The model, called δ-teams with families, is particular suitable for our application as it enables handling of gene duplicates. We develop algorithmic solutions for both models. We implemented the algorithm for discovering δ-teams with families and integrated it into a fully automated workflow for discovering gene clusters in Hi-C data, called GraphTeams. We applied it to human and mouse data to find intra- and interchromosomal gene cluster candidates. The results include intrachromosomal clusters that seem to exhibit a closer proximity in space than on their chromosomal DNA sequence. We further discovered interchromosomal gene clusters that contain genes from different chromosomes within the human genome, but are located on a single chromosome in mouse. By identifying δ-teams with families, we provide a flexible model to discover gene cluster candidates in Hi-C data. Our analysis of Hi-C data from human and mouse reveals several known gene clusters (thus validating our approach), but also few sparsely studied or possibly unknown gene cluster candidates that could be the source of further experimental investigations.

  3. Readers of Largest U.S. History Textbooks Discover a Storehouse of Misinformation.

    ERIC Educational Resources Information Center

    Putka, Gary

    1992-01-01

    Reports that a Texas advocacy group discovered thousands of errors in U.S. history textbooks. Notes that the books underwent the review after drawing favorable reactions from Texas education officials. Identifies possible explanations for the errors and steps being taken to reduce errors in the future. (SG)

  4. Using Appreciative Inquiry to Discover and Deliver Change for Surgical Technology Students

    ERIC Educational Resources Information Center

    Cabai, Katherine A.

    2012-01-01

    The purpose of this study was to examine efficacious teaching-learning strategies that community college stakeholders employ that enhance surgical technology student outcomes. Knowles's adult learning theory, constructivist theory, and appreciative inquiry served as the theoretical foundation for this study. Discovering effective aspects and…

  5. Prospects for Ground-Based Detection and Follow-up of TESS-Discovered Exoplanets

    NASA Astrophysics Data System (ADS)

    Varakian, Matthew; Deming, Drake

    2018-01-01

    The Transiting Exoplanet Survey Satellite (TESS) will monitor over 200,000 main sequence dwarf stars for exoplanetary transits, with the goal of discovering small planets orbiting stars that are bright enough for follow-up observations. We here evaluate the prospects for ground-based transit detection and follow-up of the TESS-discovered planets. We focus particularly on the TESS planets that only transit once during each 27.4 day TESS observing window per region, and we calculate to what extent ground-based recovery of additional transits will be possible. Using simulated exoplanet systems from Sullivan et al. and assuming the use of a 60-cm telescope at a high quality observing site, we project the S/N ratios for transits of such planets. We use Phoenix stellar models for stars with surface temperatures from 2500K to 12000K, and we account for limb darkening, red atmospheric noise, and missed transits due to the day-night cycle and poor weather.

  6. Protocols for Teaching Students How to Search for, Discover, and Evaluate Innovations

    ERIC Educational Resources Information Center

    Norton, William I., Jr.; Hale, Dena H.

    2011-01-01

    The authors introduce and develop protocols to guide aspiring entrepreneurs' behaviors in searching for and discovering innovative ideas that may have commercial potential. Systematic search has emerged as a theory-based, prescriptive framework to guide innovative behavior. Grounded in Fiet's theory of search and discovery, this article provides…

  7. Preliminary study of microtektites first discovered in the central Pacific by China

    NASA Technical Reports Server (NTRS)

    Hanchang, P.; Shong, Y.; Xi, M.; Shijie, S.

    1984-01-01

    Electron probe analysis was used to determine the chemical composition of microtektites discovered in the Central Pacific. An X-ray energy spectrum analysis was made, and the surface microstructure was investigated. The found microtektites appear to be younger than the microtektites reported in the Asia Australia Strewn Field.

  8. Discover Earth: An earth system science program for libraries and their communities

    NASA Astrophysics Data System (ADS)

    Curtis, L.; Dusenbery, P.

    2010-12-01

    The view from space has deepened our understanding of Earth as a global, dynamic system. Instruments on satellites and spacecraft, coupled with advances in ground-based research, have provided us with astonishing new perspectives of our planet. Now more than ever, enhancing the public’s understanding of Earth’s physical and biological systems is vital to helping citizens make informed policy decisions especially when they are faced with the consequences of global climate change. In spite of this relevance, there are many obstacles to achieving broad public understanding of key earth system science (ESS) concepts. Strategies for addressing climate change can only succeed with the full engagement of the general public. As reported by U.S. News and World Report in 2010, small towns in rural America are emerging as the front line in the climate change debate in the country. The Space Science Institute’s National Center for Interactive Learning (NCIL) in partnership with the American Library Association (ALA), the Lunar and Planetary Institute (LPI), and the National Girls Collaborative Project (NGCP) have received funding from NSF to develop a national project called the STAR Library Education Network: a hands-on learning program for libraries and their communities (or STAR-Net for short). STAR stands for Science-Technology, Activities and Resources. There are two distinct components of STAR-Net: Discover Earth and Discover Tech. While the focus for education reform is on school improvement, there is considerable research that supports the role that out-of-school experiences can play in student achievement. Libraries provide an untapped resource for engaging underserved youth and their families in fostering an appreciation and deeper understanding of science and technology topics. The overarching goal of the project is to reach underserved youth and their families with informal STEM learning experiences. The Discover Earth part of STAR_Net will produce ESS

  9. NEWLY DISCOVERED PLANETS ORBITING HD 5319, HD 11506, HD 75784 AND HD 10442 FROM THE N2K CONSORTIUM

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Giguere, Matthew J.; Fischer, Debra A.; Brewer, John M.

    2015-01-20

    Initially designed to discover short-period planets, the N2K campaign has since evolved to discover new worlds at large separations from their host stars. Detecting such worlds will help determine the giant planet occurrence at semi-major axes beyond the ice line, where gas giants are thought to mostly form. Here we report four newly discovered gas giant planets (with minimum masses ranging from 0.4 to 2.1 M {sub Jup}) orbiting stars monitored as part of the Next 2000 target stars (N2K) Doppler Survey program. Two of these planets orbit stars already known to host planets: HD 5319 and HD 11506. Themore » remaining discoveries reside in previously unknown planetary systems: HD 10442 and HD 75784. The refined orbital period of the inner planet orbiting HD 5319 is 641 days. The newly discovered outer planet orbits in 886 days. The large masses combined with the proximity to a 4:3 mean motion resonance make this system a challenge to explain with current formation and migration theories. HD 11506 has one confirmed planet, and here we confirm a second. The outer planet has an orbital period of 1627.5 days, and the newly discovered inner planet orbits in 223.6 days. A planet has also been discovered orbiting HD 75784 with an orbital period of 341.7 days. There is evidence for a longer period signal; however, several more years of observations are needed to put tight constraints on the Keplerian parameters for the outer planet. Lastly, an additional planet has been detected orbiting HD 10442 with a period of 1043 days.« less

  10. Host specificity and the probability of discovering species of helminth parasites.

    PubMed

    Poulin, R; Mouillot, D

    2005-06-01

    Different animal species have different probabilities of being discovered and described by scientists, and these probabilities are determined to a large extent by the biological characteristics of these species. For instance, species with broader geographical ranges are more likely to be encountered by collectors than species with restricted distributions; indeed, the size of the geographical range is often the best predictor of a species' date of description. For parasitic organisms, host specificity may be similarly linked to the probability of a species being found. Here, using data on 170 helminth species parasitic in freshwater fishes, we show that host specificity is associated with the year in which the helminths were described. Helminths that exploit more host species, and to a lesser degree those that exploit a broader taxonomic range of host species, tend to be discovered earlier than the more host-specific helminths. This pattern was observed across all helminth species, as well as within the different helminth taxa (trematodes, cestodes, nematodes and acanthocephalans). Our results demonstrate that the parasite species known at any given point in time are not a random subset of existing species, but rather a biased subset with respect to the parasites' biological properties.

  11. Readership Assessment of Missouri's "Discover&Enlighten": Implications for Publications and Teaching Programs.

    ERIC Educational Resources Information Center

    Wood-Turley, Sharon; Tucker, Mark

    2003-01-01

    Results of study to measure the effectiveness of Discover&Enlighten, a newsletter of the University of Missouri's College of Agriculture, Food and Natural Resources, indicate that respondents (n=150) desire a mix of stories, have a positive perception of the newsletter, and consider it to be truthful. (Contains 17 references.) (JOW)

  12. Discovering, Supporting, and Promoting Young Children's Passions and Interests: One Teacher's Reflections.

    ERIC Educational Resources Information Center

    Ferguson, Christine

    2001-01-01

    Describes the journey of one kindergarten teacher as she discovered, supported, and promoted the passions and interests of an at-risk kindergarten student, and shared in his joys of learning. Details an inquiry project about snakes, initiated by the student's knowledge about snakes, involving field trips, class discussion, learning centers, and…

  13. Separation Anxiety: An in-Class Game Designed to Help Students Discover Chromatography

    ERIC Educational Resources Information Center

    Samide, Michael J.

    2008-01-01

    An in-class activity has been developed to assist students in discovering chromatographic separations. Designed on the basis of plate theory, the game has students use instructor-provided partition coefficients to establish equilibrium for two different items between a stationary and mobile phase. As students work through equilibration and mobile…

  14. Chemical Abundance Measurements of Ultra-Faint Dwarf Galaxies Discovered by the Dark Energy Survey

    NASA Astrophysics Data System (ADS)

    Nagasawa, Daniel; Marshall, Jennifer L.; Simon, Joshua D.; Hansen, Terese; Li, Ting; Bernstein, Rebecca; Balbinot, Eduardo; Drlica-Wagner, Alex; Pace, Andrew; Strigari, Louis; Pellegrino, Craig; DePoy, Darren L.; Suntzeff, Nicholas; Bechtol, Keith; Dark Energy Suvey

    2018-01-01

    We present chemical abundance analysis results derived from high-resolution spectroscopy of ultra-faint dwarfs discovered by the Dark Energy Survey. Ultra-faint dwarf galaxies preserve a fossil record of the chemical abundance patterns imprinted by the first stars in the Universe. High-resolution spectroscopic observations of member stars in several recently discovered Milky Way satellites reveal a range of abundance patterns among ultra-faint dwarfs suggesting that star formation processes in the early Universe were quite diverse. The chemical content provides a glimpse not only of the varied nucleosynthetic processes and chemical history of the dwarfs themselves, but also the environment in which they were formed. We present the chemical abundance analysis of these objects and discuss possible explanations for the observed abundance patterns.

  15. First Nuclear DNA Amounts in more than 300 Angiosperms

    PubMed Central

    ZONNEVELD, B. J. M.; LEITCH, I. J.; BENNETT, M. D.

    2005-01-01

    • Background and Aims Genome size (DNA C-value) data are key biodiversity characters of fundamental significance used in a wide variety of biological fields. Since 1976, Bennett and colleagues have made scattered published and unpublished genome size data more widely accessible by assembling them into user-friendly compilations. Initially these were published as hard copy lists, but since 1997 they have also been made available electronically (see the Plant DNA C-values database www.kew.org/cval/homepage.html). Nevertheless, at the Second Plant Genome Size Meeting in 2003, Bennett noted that as many as 1000 DNA C-value estimates were still unpublished and hence unavailable. Scientists were strongly encouraged to communicate such unpublished data. The present work combines the databasing experience of the Kew-based authors with the unpublished C-values produced by Zonneveld to make a large body of valuable genome size data available to the scientific community. • Methods C-values for angiosperm species, selected primarily for their horticultural interest, were estimated by flow cytometry using the fluorochrome propidium iodide. The data were compiled into a table whose form is similar to previously published lists of DNA amounts by Bennett and colleagues. • Key Results and Conclusions The present work contains C-values for 411 taxa including first values for 308 species not listed previously by Bennett and colleagues. Based on a recent estimate of the global published output of angiosperm DNA C-value data (i.e. 200 first C-value estimates per annum) the present work equals 1·5 years of average global published output; and constitutes over 12 % of the latest 5-year global target set by the Second Plant Genome Size Workshop (see www.kew.org/cval/workshopreport.html). Hopefully, the present example will encourage others to unveil further valuable data which otherwise may lie forever unpublished and unavailable for comparative analyses. PMID:15905300

  16. Webinar Presentation: Using Metabolomics with Neonatal Blood Spots to Discover Causes of Childhood Leukemia

    EPA Pesticide Factsheets

    This presentation, Using Metabolomics with Neonatal Blood Spots to Discover Causes of Childhood Leukemia, was given at the NIEHS/EPA Children's Centers 2016 Webinar Series: Exposome held on May 11, 2016.

  17. Development of Creativity: The Influence of Varying Levels of Implementation of the DISCOVER Curriculum Model, a Non-Traditional Pedagogical Approach

    ERIC Educational Resources Information Center

    Maker, C. June; Jo, Sonmi; Muammar, Omar M.

    2008-01-01

    Development of creativity is influenced by multiple factors, including the environment, developmental changes, and measurement tools. In this study, we investigated the relationship between creativity development and implementation of the Discovering Intellectual Strengths and Capabilities while Observing Varied Ethnic Responses (DISCOVER)…

  18. Use of the Culture Care Theory and ethnonursing method to discover how nursing faculty teach culture care.

    PubMed

    Mixer, Sandra J

    2008-04-01

    As the world becomes increasingly multicultural, transcultural nursing education is critical to ensuring a culturally competent workforce. This paper presents a comprehensive review of literature and results of an ethnonursing pilot study using the Culture Care Theory (CCT) to discover how nursing faculty teach culture care. The literature revealed that despite 50 years of transcultural nursing knowledge development through theory, research and practice, there remains a lack of formal, integrated culture education in nursing. The importance of faculty providing generic and professional care to nursing students and using an organising framework to teach culture care was discovered. Additionally, care was essential for faculty health and well-being to enable faculty to teach culture care. This unique use of the theory and method demonstrates its usefulness in discovering and describing the complex nature of teaching culture care. Larger scale studies are predicted to further substantiate the CCT, building the discipline of nursing.

  19. Discovering chemistry with an ab initio nanoreactor

    DOE PAGES

    Wang, Lee-Ping; Titov, Alexey; McGibbon, Robert; ...

    2014-11-02

    Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis frommore » primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. Ultimately, these results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings.« less

  20. Discovering chemistry with an ab initio nanoreactor

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Wang, Lee-Ping; Titov, Alexey; McGibbon, Robert

    Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis frommore » primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. Ultimately, these results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings.« less

  1. Marquette Island: A Distinct Mafic Lithology Discovered by Opportunity

    NASA Technical Reports Server (NTRS)

    Mittlefehldt, David W.; Gellert, R.; Herkenhoff, K. E.; Clark, B. C.; Cohen, B. A.; Fleischer, I.; Jolliff, B. L.; Klingelhoefer, G.; Ming, D. W.; Yingst, R. A.

    2010-01-01

    While rolling over the Meridiani Planum sedimentary terrane, the rover Opportunity has occasionally discovered large, > 10 cm erratics. Most of these have proven to be meteorites [1], but one - Bounce Rock - is a martian basaltic rock similar in composition to the meteorite EETA79001 lithology B [2]. Presently, Opportunity is intensively investigating an --30 cm tall rock named Marquette Island that may be a distinct type of martian mafic lithology. We report the results of its continuing investigation using the Microscopic Imager (MI); Mossbauer Spectrometer (MB) and Alpha Particle X-ray Spectrometer (APXS). A companion abstract discusses the results of Panoramic Camera (Pancam) imaging of the rock [3].

  2. Discovering New Light States at Neutrino Experiments

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Essig, Rouven; /SLAC; Harnik, Roni

    2011-08-11

    Experiments designed to measure neutrino oscillations also provide major opportunities for discovering very weakly coupled states. In order to produce neutrinos, experiments such as LSND collide thousands of Coulombs of protons into fixed targets, while MINOS and MiniBooNE also focus and then dump beams of muons. The neutrino detectors beyond these beam dumps are therefore an excellent arena in which to look for long-lived pseudoscalars or for vector bosons that kinetically mix with the photon. We show that these experiments have significant sensitivity beyond previous beam dumps, and are able to partially close the gap between laboratory experiments and supernovaemore » constraints on pseudoscalars. Future upgrades to the NuMI beamline and Project X will lead to even greater opportunities for discovery. We also discuss thin target experiments with muon beams, such as those available in COMPASS, and show that they constitute a powerful probe for leptophilic PNGBs.« less

  3. Discovering New Drugs on the Cellular Level

    NASA Technical Reports Server (NTRS)

    2005-01-01

    With the Vision for Space Exploration calling for a sustained human presence in space, astronauts will need to grow plants, while in orbit, for nourishment that they will not receive from only consuming dehydrated foods. As a potential source of food for long-duration missions, space-grown plants could also give astronauts an important psychological boost, as fresh vegetables could serve as a welcomed change from monotonous meals consisting of reconstituted foods in plastic bags. Even more, these plants could likely aid in the recycling of air and wastewater on spacecraft. With a helping hand from a company by the name of Biolog, Inc., NASA is studying the impacts of decreased gravity and spaceborne bacteria on the plants being grown for food in space. With a helping hand from NASA, this very same company is creating powerful new cell- and bacteria-analysis tools for use in discovering and developing new drugs on Earth.

  4. Letting students discover the power, and the limits, of simple models: Coulomb's law

    NASA Astrophysics Data System (ADS)

    Bohacek, Peter; Vonk, Matthew; Dill, Joseph; Boehm, Emma

    2017-09-01

    The inverse-square law pops up all over. It's a simplified model of reality that describes light, sound, gravity, and static electricity. But when it's brought up in class, students are often just handed the equations. They rarely have an opportunity to discover Coulomb's law or Newton's law of gravitation for themselves. It's not hard to understand why. A quantitative demonstration of Coulomb's law can be difficult. The forces are smaller than many force sensors can measure and static electricity tends to be finicky. In addition, off-the-shelf units are expensive or difficult to use. As a result, many instructors skip this lab in favor of qualitative demonstrations or simulations. Adolf Cortel sought to remedy this by designing a straightforward experiment for measuring Coulomb's law using charged metalized-glass spheres (Christmas ornaments) and an electronic balance. Building on Cortel's design, we've made a series of video-based experiments that students can use to discover the relationships that underlie electric force.

  5. Discovering Inexpensive, Effective Catalysts for Solar Energy Conversion: An Authentic Research Laboratory Experience

    ERIC Educational Resources Information Center

    Shaner, Sarah E.; Hooker, Paul D.; Nickel, Anne-Marie; Leichtfuss, Amanda R.; Adams, Carissa S.; de la Cerda, Dionisia; She, Yuqi; Gerken, James B.; Pokhrel, Ravi; Ambrose, Nicholas J.; Khaliqi, David; Stahl, Shannon S.; Schuttlefield Christus, Jennifer D.

    2016-01-01

    Electrochemical water oxidation is a major focus of solar energy conversion efforts. A new laboratory experiment has been developed that utilizes real-time, hands-on research to discover catalysts for solar energy conversion. The HARPOON, or Heterogeneous Anodes Rapidly Perused for Oxygen Overpotential Neutralization, experiment allows an array of…

  6. A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of Mycobacterium tuberculosis InhA

    PubMed Central

    Perryman, Alexander L.; Yu, Weixuan; Wang, Xin; Ekins, Sean; Forli, Stefano; Li, Shao-Gang; Freundlich, Joel S.; Tonge, Peter J.; Olson, Arthur J.

    2015-01-01

    Isoniazid (INH) is usually administered to treat latent Mycobacterium tuberculosis (Mtb) infections, and is used in combination therapy to treat active tuberculosis disease (TB). Unfortunately, resistance to this drug is hampering its clinical effectiveness. INH is a prodrug that must be activated by Mtb catalase peroxidase (KatG) before it can inhibit InhA (Mtb enoyl-acyl-carrier-protein reductase). Isoniazid-resistant cases of TB found in clinical settings usually involve mutations in or deletion of katG, which abrogate INH activation. Compounds that inhibit InhA without requiring prior activation by KatG would not be affected by this resistance mechanism and hence would display continued potency against these drug-resistant isolates of Mtb. Virtual screening experiments versus InhA in the GO Fight Against Malaria project (GO FAM) were designed to discover new scaffolds that display base stacking interactions with the NAD cofactor. GO FAM experiments included targets from other pathogens, including Mtb, when they had structural similarity to a malaria target. Eight of the sixteen soluble compounds identified by docking against InhA plus visual inspection were modest inhibitors and did not require prior activation by KatG. The best two inhibitors discovered are both fragment-sized compounds and displayed Ki values of 54 and 59 μM, respectively. Importantly, the novel inhibitors discovered have low structural similarity to known InhA inhibitors and, thus, help expand the number of chemotypes on which future medicinal chemistry efforts can be focused. These new fragment hits could eventually help advance the fight against INH-resistant Mtb strains, which pose a significant global health threat. PMID:25636146

  7. Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers.

    PubMed

    Cesnik, Anthony J; Yang, Bing; Truong, Andrew; Etheridge, Tyler; Spiniello, Michele; Steinbrink, Maisie I; Shortreed, Michael R; Frey, Brian L; Jarrard, David F; Smith, Lloyd M

    2018-06-01

    The molecular mechanisms underlying aggressive versus indolent disease are not fully understood. Recent research has implicated a class of molecules known as long noncoding RNAs (lncRNAs) in tumorigenesis and progression of cancer. Our objective was to discover lncRNAs that differentiate aggressive and indolent prostate cancers. We analyzed paired tumor and normal tissues from six aggressive Gleason score (GS) 8-10 and six indolent GS 6 prostate cancers. Extracted RNA was split for poly(A)+ and ribosomal RNA depletion library preparations, followed byRNA sequencing (RNA-Seq) using an Illumina HiSeq 2000. We developed an RNA-Seq data analysis pipeline to discover and quantify these molecules. Candidate lncRNAs were validated using RT-qPCR on 87 tumor tissue samples: 28 (GS 6), 28 (GS 3+4), 6 (GS 4+3), and 25 (GS 8-10). Statistical correlations between lncRNAs and clinicopathologic variables were tested using ANOVA. The 43 differentially expressed (DE) lncRNAs between aggressive and indolent prostate cancers included 12 annotated and 31 novel lncRNAs. The top six DE lncRNAs were selected based on large, consistent fold-changes in the RNA-Seq results. Three of these candidates passed RT-qPCR validation, including AC009014.3 (P < .001 in tumor tissue) and a newly discovered X-linked lncRNA named XPLAID (P = .049 in tumor tissue and P = .048 in normal tissue). XPLAID and AC009014.3 show promise as prognostic biomarkers. We discovered several dozen lncRNAs that distinguish aggressive and indolent prostate cancers, of which four were validated using RT-qPCR. The investigation into their biology is ongoing. Published by Elsevier Inc.

  8. Incorporating Topic Assignment Constraint and Topic Correlation Limitation into Clinical Goal Discovering for Clinical Pathway Mining.

    PubMed

    Xu, Xiao; Jin, Tao; Wei, Zhijie; Wang, Jianmin

    2017-01-01

    Clinical pathways are widely used around the world for providing quality medical treatment and controlling healthcare cost. However, the expert-designed clinical pathways can hardly deal with the variances among hospitals and patients. It calls for more dynamic and adaptive process, which is derived from various clinical data. Topic-based clinical pathway mining is an effective approach to discover a concise process model. Through this approach, the latent topics found by latent Dirichlet allocation (LDA) represent the clinical goals. And process mining methods are used to extract the temporal relations between these topics. However, the topic quality is usually not desirable due to the low performance of the LDA in clinical data. In this paper, we incorporate topic assignment constraint and topic correlation limitation into the LDA to enhance the ability of discovering high-quality topics. Two real-world datasets are used to evaluate the proposed method. The results show that the topics discovered by our method are with higher coherence, informativeness, and coverage than the original LDA. These quality topics are suitable to represent the clinical goals. Also, we illustrate that our method is effective in generating a comprehensive topic-based clinical pathway model.

  9. Incorporating Topic Assignment Constraint and Topic Correlation Limitation into Clinical Goal Discovering for Clinical Pathway Mining

    PubMed Central

    Xu, Xiao; Wei, Zhijie

    2017-01-01

    Clinical pathways are widely used around the world for providing quality medical treatment and controlling healthcare cost. However, the expert-designed clinical pathways can hardly deal with the variances among hospitals and patients. It calls for more dynamic and adaptive process, which is derived from various clinical data. Topic-based clinical pathway mining is an effective approach to discover a concise process model. Through this approach, the latent topics found by latent Dirichlet allocation (LDA) represent the clinical goals. And process mining methods are used to extract the temporal relations between these topics. However, the topic quality is usually not desirable due to the low performance of the LDA in clinical data. In this paper, we incorporate topic assignment constraint and topic correlation limitation into the LDA to enhance the ability of discovering high-quality topics. Two real-world datasets are used to evaluate the proposed method. The results show that the topics discovered by our method are with higher coherence, informativeness, and coverage than the original LDA. These quality topics are suitable to represent the clinical goals. Also, we illustrate that our method is effective in generating a comprehensive topic-based clinical pathway model. PMID:29065617

  10. Distribution and clinical impact of functional variants in 50,726 whole-exome sequences from the DiscovEHR study.

    PubMed

    Dewey, Frederick E; Murray, Michael F; Overton, John D; Habegger, Lukas; Leader, Joseph B; Fetterolf, Samantha N; O'Dushlaine, Colm; Van Hout, Cristopher V; Staples, Jeffrey; Gonzaga-Jauregui, Claudia; Metpally, Raghu; Pendergrass, Sarah A; Giovanni, Monica A; Kirchner, H Lester; Balasubramanian, Suganthi; Abul-Husn, Noura S; Hartzel, Dustin N; Lavage, Daniel R; Kost, Korey A; Packer, Jonathan S; Lopez, Alexander E; Penn, John; Mukherjee, Semanti; Gosalia, Nehal; Kanagaraj, Manoj; Li, Alexander H; Mitnaul, Lyndon J; Adams, Lance J; Person, Thomas N; Praveen, Kavita; Marcketta, Anthony; Lebo, Matthew S; Austin-Tse, Christina A; Mason-Suares, Heather M; Bruse, Shannon; Mellis, Scott; Phillips, Robert; Stahl, Neil; Murphy, Andrew; Economides, Aris; Skelding, Kimberly A; Still, Christopher D; Elmore, James R; Borecki, Ingrid B; Yancopoulos, George D; Davis, F Daniel; Faucett, William A; Gottesman, Omri; Ritchie, Marylyn D; Shuldiner, Alan R; Reid, Jeffrey G; Ledbetter, David H; Baras, Aris; Carey, David J

    2016-12-23

    The DiscovEHR collaboration between the Regeneron Genetics Center and Geisinger Health System couples high-throughput sequencing to an integrated health care system using longitudinal electronic health records (EHRs). We sequenced the exomes of 50,726 adult participants in the DiscovEHR study to identify ~4.2 million rare single-nucleotide variants and insertion/deletion events, of which ~176,000 are predicted to result in a loss of gene function. Linking these data to EHR-derived clinical phenotypes, we find clinical associations supporting therapeutic targets, including genes encoding drug targets for lipid lowering, and identify previously unidentified rare alleles associated with lipid levels and other blood level traits. About 3.5% of individuals harbor deleterious variants in 76 clinically actionable genes. The DiscovEHR data set provides a blueprint for large-scale precision medicine initiatives and genomics-guided therapeutic discovery. Copyright © 2016, American Association for the Advancement of Science.

  11. ASASSN1: Bright Comet Discovered by the All Sky Automated Survey for SuperNovae

    NASA Astrophysics Data System (ADS)

    Prieto, JJ. L.; Shappee, B. J.; Brimacombe, J.; Stanek, K. Z.; Chen, Ping; Dong, Subo; Holoien, T. W.-S.; Kochanek, C. S.; Brown, J. S.; Shields, J. V.; Thompson, T. A.

    2017-07-01

    During the ongoing All Sky Automated Survey for SuperNovae (ASAS-SN, Shappee et al. 2014), using data from the quadruple 14-cm "Cassius" telescope on Cerro Tololo, Chile, we discovered a new moving transient source, now confirmed as a comet.

  12. An ensemble heterogeneous classification methodology for discovering health-related knowledge in social media messages.

    PubMed

    Tuarob, Suppawong; Tucker, Conrad S; Salathe, Marcel; Ram, Nilam

    2014-06-01

    The role of social media as a source of timely and massive information has become more apparent since the era of Web 2.0.Multiple studies illustrated the use of information in social media to discover biomedical and health-related knowledge.Most methods proposed in the literature employ traditional document classification techniques that represent a document as a bag of words.These techniques work well when documents are rich in text and conform to standard English; however, they are not optimal for social media data where sparsity and noise are norms.This paper aims to address the limitations posed by the traditional bag-of-word based methods and propose to use heterogeneous features in combination with ensemble machine learning techniques to discover health-related information, which could prove to be useful to multiple biomedical applications, especially those needing to discover health-related knowledge in large scale social media data.Furthermore, the proposed methodology could be generalized to discover different types of information in various kinds of textual data. Social media data is characterized by an abundance of short social-oriented messages that do not conform to standard languages, both grammatically and syntactically.The problem of discovering health-related knowledge in social media data streams is then transformed into a text classification problem, where a text is identified as positive if it is health-related and negative otherwise.We first identify the limitations of the traditional methods which train machines with N-gram word features, then propose to overcome such limitations by utilizing the collaboration of machine learning based classifiers, each of which is trained to learn a semantically different aspect of the data.The parameter analysis for tuning each classifier is also reported. Three data sets are used in this research.The first data set comprises of approximately 5000 hand-labeled tweets, and is used for cross validation of the

  13. Discovering Tradeoffs, Vulnerabilities, and Dependencies within Water Resources Systems

    NASA Astrophysics Data System (ADS)

    Reed, P. M.

    2015-12-01

    There is a growing recognition and interest in using emerging computational tools for discovering the tradeoffs that emerge across complex combinations infrastructure options, adaptive operations, and sign posts. As a field concerned with "deep uncertainties", it is logically consistent to include a more direct acknowledgement that our choices for dealing with computationally demanding simulations, advanced search algorithms, and sensitivity analysis tools are themselves subject to failures that could adversely bias our understanding of how systems' vulnerabilities change with proposed actions. Balancing simplicity versus complexity in our computational frameworks is nontrivial given that we are often exploring high impact irreversible decisions. It is not always clear that accepted models even encompass important failure modes. Moreover as they become more complex and computationally demanding the benefits and consequences of simplifications are often untested. This presentation discusses our efforts to address these challenges through our "many-objective robust decision making" (MORDM) framework for the design and management water resources systems. The MORDM framework has four core components: (1) elicited problem conception and formulation, (2) parallel many-objective search, (3) interactive visual analytics, and (4) negotiated selection of robust alternatives. Problem conception and formulation is the process of abstracting a practical design problem into a mathematical representation. We build on the emerging work in visual analytics to exploit interactive visualization of both the design space and the objective space in multiple heterogeneous linked views that permit exploration and discovery. Many-objective search produces tradeoff solutions from potentially competing problem formulations that can each consider up to ten conflicting objectives based on current computational search capabilities. Negotiated design selection uses interactive visualization

  14. Risk of appendicitis in patients with incidentally discovered appendicoliths.

    PubMed

    Khan, Muhammad Sohaib; Chaudhry, Mustafa Belal Hafeez; Shahzad, Noman; Tariq, Marvi; Memon, Wasim Ahmed; Alvi, Abdul Rehman

    2018-01-01

    An appendicolith-related appendiceal obstruction leading to appendicitis is a commonly encountered surgical emergency that has clear evidence-based management plans. However, there is no consensus on management of asymptomatic patients when appendicoliths are found incidentally. The objective of this study was to determine the risk of appendicitis in patients with an incidental finding of the appendicolith. A retrospective matched cohort study of patients with appendicolith discovered incidentally on computed tomographic scan from January 2008 to December 2014 at our institution was completed. The size and position of the appendicolith were ascertained. The study group was matched by age and gender to a control group. Both groups were contacted and interviewed regarding development of appendicitis. In total, 111 patients with appendicolith were successfully contacted and included in the study. Mean age was found to be 38 ± 15 y with 36 (32%) of the study population being females. Mean length of appendix was 66 ± 16 mm, and mean width was 5.8 ± 0.9 mm. Mean size of the appendicolith was 3.6 ± 1.1 mm (1.4-7.8 mm). Fifty-eight percent of appendicoliths was located at the proximal end or whole of appendix, 31% at mid area, and 11% at the distal end of appendix. All patients of the study and control groups were contacted, and at a mean follow-up of 4.0 ± 1.7 y, there was no occurrence of acute appendicitis in either group. Patients with incidentally discovered appendicolith on radiological imaging did not develop appendicitis. Hence, the risk of developing acute appendicitis for these patients does not seem higher than the general population. Copyright © 2017 Elsevier Inc. All rights reserved.

  15. Discovering shared segments on the migration route of the bar-headed goose by time-based plane-sweeping trajectory clustering

    USGS Publications Warehouse

    Luo, Ze; Baoping, Yan; Takekawa, John Y.; Prosser, Diann J.

    2012-01-01

    We propose a new method to help ornithologists and ecologists discover shared segments on the migratory pathway of the bar-headed geese by time-based plane-sweeping trajectory clustering. We present a density-based time parameterized line segment clustering algorithm, which extends traditional comparable clustering algorithms from temporal and spatial dimensions. We present a time-based plane-sweeping trajectory clustering algorithm to reveal the dynamic evolution of spatial-temporal object clusters and discover common motion patterns of bar-headed geese in the process of migration. Experiments are performed on GPS-based satellite telemetry data from bar-headed geese and results demonstrate our algorithms can correctly discover shared segments of the bar-headed geese migratory pathway. We also present findings on the migratory behavior of bar-headed geese determined from this new analytical approach.

  16. The eminent anatomists who discovered the upper oesophageal sphincter.

    PubMed

    Marchese-Ragona, R; Ottaviano, G; Masiero, S; Staffieri, C; Martini, A; Staffieri, A; Mion, M; Zaninotto, G; Restivo, D A

    2014-10-01

    To discover the anatomist who first identified the upper oesophageal sphincter. The authors searched dozens of antique anatomy textbooks kept in the old section of the 'Vincenzo Pinali' Medical Library of Padua University, looking for descriptions of the upper oesophageal sphincter. The oesophageal sphincter was drawn correctly only in 1601, by Julius Casserius, in the book De vocis auditusque organis historia anatomica… (which translates as 'An Anatomical History on the Organs of Voice and Hearing …'), and was properly described by Antonio Maria Valsalva in 1704 in the book De aure humana tractatus… ('Treatise on the Human Ear …'). Anatomists Casserius and Valsalva can be considered the discoverers of the 'oesophageal sphincter'.

  17. Discovering the Thermodynamics of Simultaneous Equilibria: An Entropy Analysis Activity Involving Consecutive Equilibria

    ERIC Educational Resources Information Center

    Bindel, Thomas H.

    2007-01-01

    An activity is presented in which the thermodynamics of simultaneous, consecutive equilibria are explored. The activity is appropriate for second-year high school or AP chemistry. Students discover that a reactant-favored (entropy-diminishing or endergonic) reaction can be caused to happen if it is coupled with a product-favored reaction of…

  18. Examining Pre-K Professional Development Programs: Discovering the Road to Exceptional Instructional Practices

    ERIC Educational Resources Information Center

    Williams, Sheila D.

    2016-01-01

    The purpose of this qualitative research study was to discover and interpret the experiences of pre-k teachers in an urban school district located in a Northeastern region of the United States. Using a basic qualitative research design, fifteen participants were recruited by a purposeful sampling method to be interviewed after the implementation…

  19. New open cluster candidates discovered in the XSTPS-GAC survey

    NASA Astrophysics Data System (ADS)

    Guo, Jin-Cheng; Zhang, Hua-Wei; Zhang, Hui-Hua; Liu, Xiao-Wei; Yuan, Hai-Bo; Huang, Yang; Wang, Song; Chen, Li; Zhao, Hai-Bin; Liu, Ji-Feng; Chen, Bing-Qiu; Xiang, Mao-Sheng; Tian, Zhi-Jia; Huo, Zhi-Ying; Wang, Chun

    2018-03-01

    The Xuyi Schmidt Telescope Photometric Survey of the Galactic Anti-center (XSTPS-GAC) is a photometric sky survey that covers nearly 6000 deg2 towards the Galactic Anti-center (GAC) in the g, r, i bands. Half of its survey field is located on the Galactic Anti-center disk, which makes XSTPS-GAC highly suitable to search for new open clusters in the GAC region. In this paper, we report new open cluster candidates discovered in this survey, as well as properties of these open cluster candidates, such as age, distance and reddening, derived by isochrone fitting in the color-magnitude diagram (CMD). These open cluster candidates are stellar density peaks detected in the star density maps by applying the method from Koposov et al. Each candidate is inspected in terms of its true color image composed from three XSTPS-GAC band images. Then its CMD is checked, in order to identify whether the central region stars have a clear isochrone-like trend differing from background stars. The parameters derived from isochrone fitting for these candidates are mainly based on three band photometry of XSTPS-GAC. Moreover, when these new candidates are able to be seen clearly in 2MASS data, their parameters are also derived based on the 2MASS (J – H, J) CMD. There are a total of 320 known open clusters rediscovered and 24 new open cluster candidates discovered in this work. Furthermore, the parameters of these new candidates, as well as another 11 previously known open clusters, are properly determined for the first time.

  20. Retinal Oximetry Discovers Novel Biomarkers in Retinal and Brain Diseases.

    PubMed

    Stefánsson, Einar; Olafsdottir, Olof Birna; Einarsdottir, Anna Bryndis; Eliasdottir, Thorunn Scheving; Eysteinsson, Thor; Vehmeijer, Wouter; Vandewalle, Evelien; Bek, Toke; Hardarson, Sveinn Hakon

    2017-05-01

    Biomarkers for several eye and brain diseases are reviewed, where retinal oximetry may help confirm diagnosis or measure severity of disease. These include diabetic retinopathy, central retinal vein occlusion (CRVO), retinitis pigmentosa, glaucoma, and Alzheimer's disease. Retinal oximetry is based on spectrophotometric fundus imaging and measures oxygen saturation in retinal arterioles and venules in a noninvasive, quick, safe manner. Retinal oximetry detects changes in oxygen metabolism, including those that result from ischemia or atrophy. In diabetic retinopathy, venous oxygen saturation increases and arteriovenous difference decreases. Both correlate with diabetic retinopathy severity as conventionally classified on fundus photographs. In CRVO, vein occlusion causes hypoxia, which is measured directly by retinal oximetry to confirm the diagnosis and measure severity. In both diseases, the change in oxygen levels is a consequence of disturbed blood flow with resulting tissue hypoxia and vascular endothelial growth factor (VEGF) production. In atrophic diseases, such as retinitis pigmentosa and glaucoma, retinal oxygen consumption is reduced and this is detected by retinal oximetry. Retinal oximetry correlates with visual field damage and retinal atrophy. It is an objective metabolic measure of the degree of retinal atrophy. Finally, the retina is part of the central nervous system tissue and reflects central nervous system diseases. In Alzheimer's disease, a change in retinal oxygen metabolism has been discovered. Retinal oximetry is a novel, noninvasive technology that opens the field of metabolic imaging of the retina. Biomarkers in metabolic, ischemic, and atrophic diseases of the retina and central nervous system have been discovered.

  1. A Scalable Approach for Discovering Conserved Active Subnetworks across Species

    PubMed Central

    Verfaillie, Catherine M.; Hu, Wei-Shou; Myers, Chad L.

    2010-01-01

    Overlaying differential changes in gene expression on protein interaction networks has proven to be a useful approach to interpreting the cell's dynamic response to a changing environment. Despite successes in finding active subnetworks in the context of a single species, the idea of overlaying lists of differentially expressed genes on networks has not yet been extended to support the analysis of multiple species' interaction networks. To address this problem, we designed a scalable, cross-species network search algorithm, neXus (Network - cross(X)-species - Search), that discovers conserved, active subnetworks based on parallel differential expression studies in multiple species. Our approach leverages functional linkage networks, which provide more comprehensive coverage of functional relationships than physical interaction networks by combining heterogeneous types of genomic data. We applied our cross-species approach to identify conserved modules that are differentially active in stem cells relative to differentiated cells based on parallel gene expression studies and functional linkage networks from mouse and human. We find hundreds of conserved active subnetworks enriched for stem cell-associated functions such as cell cycle, DNA repair, and chromatin modification processes. Using a variation of this approach, we also find a number of species-specific networks, which likely reflect mechanisms of stem cell function that have diverged between mouse and human. We assess the statistical significance of the subnetworks by comparing them with subnetworks discovered on random permutations of the differential expression data. We also describe several case examples that illustrate the utility of comparative analysis of active subnetworks. PMID:21170309

  2. Discovering Free Energy Basins for Macromolecular Systems via Guided Multiscale Simulation

    PubMed Central

    Sereda, Yuriy V.; Singharoy, Abhishek B.; Jarrold, Martin F.; Ortoleva, Peter J.

    2012-01-01

    An approach for the automated discovery of low free energy states of macromolecular systems is presented. The method does not involve delineating the entire free energy landscape but proceeds in a sequential free energy minimizing state discovery, i.e., it first discovers one low free energy state and then automatically seeks a distinct neighboring one. These states and the associated ensembles of atomistic configurations are characterized by coarse-grained variables capturing the large-scale structure of the system. A key facet of our approach is the identification of such coarse-grained variables. Evolution of these variables is governed by Langevin dynamics driven by thermal-average forces and mediated by diffusivities, both of which are constructed by an ensemble of short molecular dynamics runs. In the present approach, the thermal-average forces are modified to account for the entropy changes following from our knowledge of the free energy basins already discovered. Such forces guide the system away from the known free energy minima, over free energy barriers, and to a new one. The theory is demonstrated for lactoferrin, known to have multiple energy-minimizing structures. The approach is validated using experimental structures and traditional molecular dynamics. The method can be generalized to enable the interpretation of nanocharacterization data (e.g., ion mobility – mass spectrometry, atomic force microscopy, chemical labeling, and nanopore measurements). PMID:22423635

  3. Macrofaunal communites at newly discovered hydrothermal fields in Central Indian Ridge

    NASA Astrophysics Data System (ADS)

    Miyazaki, J.; Takai, K.; Nakamura, K.; Watanabe, H.; Noguchi, T.; Matsuzaki, T.; Watsuji, T.; Nemoto, S.; Kawagucci, S.; Shibuya, T.; Okamura, K.; Mochizuki, M.; Orihashi, Y.; Marie, D.; Koonjul, M.; Singh, M.; Beedessee, G.; Bhikajee, M.; Tamaki, K.

    2010-12-01

    In YK09-13 Leg1 cruise targeted on the segment 15 and 16 in Central Indian Ridge (CIR), we have successfully discovered two hydrothermal fields, DODO field and Solitaire field. We expected that there were unique macrofaunal communities in these hydrothermal fields, because there was in Kairei field on the segment 1 in CIR. Particularly, a gastropod, “scaly-foot”, which has sclerites covered with iron-sulfide has only discovered in Kairei field. Therefore, it was interesting whether this unique scaly-foot only exists in Kairei fields or widely expands in CIR. In DODO fields, there were 10 to 15 active chimneys. However, very few hydrothermal vent-endemic faunas were observed. We observed only crabs and shrimps but we did not found shells. As opposed to in the Dodo field, biomass and composition of macrofaunal communities were highly prosperous in the Solitaire field, being equal to Kairei field. Although we have an only one dive to explore the Solitaire field, many predominant taxa were sampled and observed, for example, Alviniconcha, mussels, vanacles and so on. However, the most outstanding feature was the presence of a new morphotype of ‘scaly-foot’ gastropod. Discovery of this new-morphytpe ‘scary-foot” disproved our knowledge. In this conference, I will present these observations. Especially characterization of two types of scaly-foot (Kairei-type and Solitaire-type) will be focused.

  4. On how Watson and Crick discovered what Watson and Crick had suggested: the "folk" concept of discovery rediscovered.

    PubMed

    Charpa, Ulrich

    2008-01-01

    This article opens with general and historical remarks on philosophy of science's problems with the concept of discovery. Then, drawing upon simple examples of Watson's and Crick's non-philosophical usage, I characterize phrases of the type "x discovers y" semantically. It will subsequently be shown how widespread philosophical discussion on discovery violates the semantic constraints of phrases of the type "x discovers y." Then I provide a philosophical reconstruction of "x discovers y" that is in keeping with the "folk" notion of discovery. The philosophical ingredients of this approach are taken from a certain aspect of action theory and from epistemological reliabilism. The approach draws upon the concept of superior action and connects this concept to progressive research. In contrast to normal actions, superior actions are primarily explained by competencies. This perspective includes reminders of what some nineteenth-century philosopher-scientists had advocated as a competence-oriented view on scientific research. Finally, this approach is applied to the case of Watson's and Crick's discovery.

  5. Screening Libraries of Semifluorinated Arylene Bisimides to Discover and Predict Thermodynamically Controlled Helical Crystallization.

    PubMed

    Ho, Ming-Shou; Partridge, Benjamin E; Sun, Hao-Jan; Sahoo, Dipankar; Leowanawat, Pawaret; Peterca, Mihai; Graf, Robert; Spiess, Hans W; Zeng, Xiangbing; Ungar, Goran; Heiney, Paul A; Hsu, Chain-Shu; Percec, Virgil

    2016-12-12

    Synthesis, structural, and retrostructural analysis of a library containing 16 self-assembling perylene (PBI), 1,6,7,12-tetrachloroperylene (Cl 4 PBI), naphthalene (NBI), and pyromellitic (PMBI) bisimides functionalized with environmentally friendly AB 3 chiral racemic semifluorinated minidendrons at their imide groups via m = 0, 1, 2, and 3 methylene units is reported. These semifluorinated compounds melt at lower temperatures than homologous hydrogenated compounds, permitting screening of all their thermotropic phases via structural analysis to discover thermodynamically controlled helical crystallization from propeller-like, cogwheel, and tilted molecules as well as lamellar-like structures. Thermodynamically controlled helical crystallization was discovered for propeller-like PBI, Cl 4 PBI and NBI with m = 0. Unexpectedly, assemblies of twisted Cl 4 PBIs exhibit higher order than those of planar PBIs. PBI with m = 1, 2, and 3 form a thermodynamically controlled columnar hexagonal 2D lattice of tilted helical columns with intracolumnar order. PBI and Cl 4 PBI with m = 1 crystallize via a recently discovered helical cogwheel mechanism, while NBI and PMBI with m = 1 form tilted helical columns. PBI, NBI and PMBI with m = 2 generate lamellar-like structures. 3D and 2D assemblies of PBI with m = 1, 2, and 3, NBI with m = 1 and PMBI with m = 2 exhibit 3.4 Å π-π stacking. The library approach applied here and in previous work enabled the discovery of six assemblies which self-organize via thermodynamic control into 3D and 2D periodic arrays, and provides molecular principles to predict the supramolecular structure of electronically active components.

  6. Development of a global land cover characteristics database and IGBP DISCover from 1 km AVHRR data

    USGS Publications Warehouse

    Loveland, Thomas R.; Reed, B.C.; Brown, Jesslyn F.; Ohlen, D.O.; Zhu, Z.; Yang, L.; Merchant, J.W.

    2000-01-01

    Researchers from the U.S. Geological Survey, University of Nebraska-Lincoln and the European Commission's Joint Research Centre, Ispra, Italy produced a 1 km resolution global land cover characteristics database for use in a wide range of continental-to global-scale environmental studies. This database provides a unique view of the broad patterns of the biogeographical and ecoclimatic diversity of the global land surface, and presents a detailed interpretation of the extent of human development. The project was carried out as an International Geosphere-Biosphere Programme, Data and Information Systems (IGBP-DIS) initiative. The IGBP DISCover global land cover product is an integral component of the global land cover database. DISCover includes 17 general land cover classes defined to meet the needs of IGBP core science projects. A formal accuracy assessment of the DISCover data layer will be completed in 1998. The 1 km global land cover database was developed through a continent-by-continent unsupervised classification of 1 km monthly Advanced Very High Resolution Radiometer (AVHRR) Normalized Difference Vegetation Index (NDVI) composites covering 1992-1993. Extensive post-classification stratification was necessary to resolve spectral/temporal confusion between disparate land cover types. The complete global database consists of 961 seasonal land cover regions that capture patterns of land cover, seasonality and relative primary productivity. The seasonal land cover regions were aggregated to produce seven separate land cover data sets used for global environmental modelling and assessment. The data sets include IGBP DISCover, U.S. Geological Survey Anderson System, Simple Biosphere Model, Simple Biosphere Model 2, Biosphere-Atmosphere Transfer Scheme, Olson Ecosystems and Running Global Remote Sensing Land Cover. The database also includes all digital sources that were used in the classification. The complete database can be sourced from the website: http://edcwww.cr.usgs.gov/landdaac/glcc/glcc.html.

  7. Exposed water ice discovered near the south pole of Mars

    USGS Publications Warehouse

    Titus, T.N.; Kieffer, H.H.; Christensen, P.R.

    2003-01-01

    The Mars Odyssey Thermal Emission Imaging System (THEMIS) has discovered water ice exposed near the edge of Mars' southern perennial polar cap. The surface H2O ice was first observed by THEMIS as a region that was cooler than expected for dry soil at that latitude during the summer season. Diurnal and seasonal temperature trends derived from Mars Global Surveyor Thermal Emission Spectrometer observations indicate that there is H2O ice at the surface. Viking observations, and the few other relevant THEMIS observations, indicate that surface H2O ice may be widespread around and under the perennial CO2 cap.

  8. Utilizing NASA DISCOVER-AQ Data to Examine Spatial Gradients in Complex Emission Environments

    NASA Astrophysics Data System (ADS)

    Buzanowicz, M. E.; Moore, W.; Crawford, J. H.; Schroeder, J.

    2017-12-01

    Although many regulations have been enacted with the goal of improving air quality, many parts of the US are still classified as `non-attainment areas' because they frequently violate federal air quality standards. Adequately monitoring the spatial distribution of pollutants both within and outside of non-attainment areas has been an ongoing challenge for regulators. Observations of near-surface pollution from space-based platforms would provide an unprecedented view of the spatial distribution of pollution, but this goal has not yet been realized due to fundamental limitations of satellites, specifically because the footprint size of satellite measurements may not be sufficiently small enough to capture true gradients in pollution, and rather represents an average over a large area. NASA's DISCOVER-AQ was a multi-year field campaign aimed at improving our understanding of the role that remote sensing, including satellite-based remote sensing, could play in air quality monitoring systems. DISCOVER-AQ data will be utilized to create a metric to examine spatial gradients and how satellites can capture those gradients in areas with complex emission environments. Examining horizontal variability within a vertical column is critical to understanding mixing within the atmosphere. Aircraft spirals conducted during DISCOVER-AQ were divided into octants, and averages of a given a species were calculated, with certain points receiving a flag. These flags were determined by calculating gradients between subsequent octants. Initial calculations have shown that over areas with large point source emissions, such as Platteville and Denver-La Casa in Colorado, and Essex, Maryland, satellite retrievals may not adequately capture spatial variability in the atmosphere, thus complicating satellite inversion techniques and limiting our ability to understand human exposure on sub-grid scales. Further calculations at other locations and for other trace gases are necessary to determine

  9. Exploring National Parks & Monuments: Students Can Discover National Monuments, National Parks & Natural Wonders

    ERIC Educational Resources Information Center

    Curriculum Review, 2009

    2009-01-01

    This article presents an interview with Cynthia Light Brown, author of "Discover National Monuments, National Parks: Natural Wonders," a book that introduces readers ages 8-12 to the history and science behind some of the amazing natural sites in the United States. In this interview, Cynthia Light Brown describes how she became interested in…

  10. NASA's Kepler Mission Discovers Its Smallest Habitable Zone Planets (Reporter Pkg)

    NASA Image and Video Library

    2013-04-18

    NASA's Kepler mission has discovered two new planetary systems that include three super-Earth-size planets in the 'habitable zone,' the range of distance from a star where the surface temperature of an orbiting planet might be suitable for liquid water. Scientists do not know whether life could exist on the newfound planets, but their discovery signals we are another step closer to finding a world similar to Earth around a star like our sun. Kepler-62 and -69 systems

  11. Discovering Coherent Structures Using Local Causal States

    NASA Astrophysics Data System (ADS)

    Rupe, Adam; Crutchfield, James P.; Kashinath, Karthik; Prabhat, Mr.

    2017-11-01

    Coherent structures were introduced in the study of fluid dynamics and were initially defined as regions characterized by high levels of coherent vorticity, i.e. regions where instantaneously space and phase correlated vorticity are high. In a more general spatiotemporal setting, coherent structures can be seen as localized broken symmetries which persist in time. Building off the computational mechanics framework, which integrates tools from computation and information theory to capture pattern and structure in nonlinear dynamical systems, we introduce a theory of coherent structures, in the more general sense. Central to computational mechanics is the causal equivalence relation, and a local spatiotemporal generalization of it is used to construct the local causal states, which are utilized to uncover a system's spatiotemporal symmetries. Coherent structures are then identified as persistent, localized deviations from these symmetries. We illustrate how novel patterns and structures can be discovered in cellular automata and outline the path from them to laminar, transitional and turbulent flows. Funded by Intel through the Big Data Center at LBNL and the IPCC at UC Davis.

  12. MASTER: bright OT discovered during Fermi trigger 512353690/GRB170328A inspection

    NASA Astrophysics Data System (ADS)

    Gorbovskoy, E.; Lipunov, V.; Buckley, D.; Rebolo, R.; Serra-Ricart, M.; Gress, O.; Tiurina, N.; Balanutsa, P.; Kornilov, V.; Vladimirov, V.

    2017-03-01

    MASTER-SAAO auto-detection system ( Lipunov et al., "MASTER Global Robotic Net", Advances in Astronomy, 2010, 30L ) discovered OT source at (RA, Dec) = 18h 45m 46.55s -35d 28m 47.6s on 2017-03-28.06645 UT during Fermi trigger 512353690(GRB170328A) inspection https://gcn.gsfc.nasa.gov/other/512353690.fermi (trigger time is 17/03/28 00:28:05.53UT).

  13. Between universalism and regionalism: universal systematics from imperial Japan.

    PubMed

    Lee, Jung

    2015-12-01

    Historiographic discussions of the universality and regionality of science have to date focused on European cases for making regional science universal. This paper presents a new perspective by moving beyond European origins and illuminating a non-European scientist's engagement with the universality and regionality of science. It will examine the case of the Japanese botanist Nakai Takenoshin (1882-1952), an internationally recognized authority on Korean flora based at Tokyo Imperial University. Serving on the International Committee on Botanical Nomenclature in 1926, Nakai endorsed and acted upon European claims of universal science, whilst simultaneously unsettling them with his regionally shaped systematics. Eventually he came to promote his own systematics, built regionally on Korean flora, as the new universal. By analysing his shifting claims in relation to those of other European and non-European botanists, this paper makes two arguments. First, universalism and regionalism were not contradictory foundations of scientific practice but useful tools used by this non-European botanist in maintaining his scientific authority as a representative Japanese systematist. Second, his claims to universality and regionalism were both imperially charged. An imperially monopolized study of Korean plants left a regional imprint on Nakai's systematics. In order to maintain his scientific authority beyond its region of origin he had to assert either the expanding regionalism of 'East Asia' or universalism.

  14. Palouse prairie - synaptic relics from a senior pseudo-botanist

    USDA-ARS?s Scientific Manuscript database

    Historically, vegetation of the Missoula Valley prairie has been regarded as "Agropyron-Festuca community," otherwise described as "Palouse bunchgrass prairie" or just "Palouse prairie." Synecology of this association has been well described starting in the 1920s, however there is no description of...

  15. Hermann Carl Vogel's report on a tour to England, Scotland and Ireland in the year 1875. (German Title: Hermann Carl Vogels Bericht über eine Reise nach England, Schottland und Irland im Jahr 1875)

    NASA Astrophysics Data System (ADS)

    Vogel, Hermann Carl; Gußmann, Ernst-August; Dick, Wolfgang R.

    In the summer of 1875 Hermann Carl Vogel made a tour to Great Britain with regard to the founded but not yet erected Astrophysical Observatory at Potsdam. A report on this tour written by him is published here for the first time. It contains Vogel's impressions of observatories and other institutions in London (including Greenwich and Kew), Gateshead near Newcastle on Tyne, Edinburgh, Dun Echt near Aberdeen, Glasgow, Dublin, Birr Castle near Parsonstown, and Oxford.

  16. A Novel Method for Discovering Fuzzy Sequential Patterns Using the Simple Fuzzy Partition Method.

    ERIC Educational Resources Information Center

    Chen, Ruey-Shun; Hu, Yi-Chung

    2003-01-01

    Discusses sequential patterns, data mining, knowledge acquisition, and fuzzy sequential patterns described by natural language. Proposes a fuzzy data mining technique to discover fuzzy sequential patterns by using the simple partition method which allows the linguistic interpretation of each fuzzy set to be easily obtained. (Author/LRW)

  17. A Phenomenological Study to Discover Low-Income Adults' Perceptions and Expectations Regarding Financial Literacy

    ERIC Educational Resources Information Center

    Schaffer, Brigid Ann

    2013-01-01

    This phenomenological study explored the perceptions and expectations of low income adults regarding financial literacy to discover ways to increase attendance in financial literacy programs designs for this cohort. The study utilized interviews with closed-ended questions to establish the participants' backgrounds, then opened-ended questions to…

  18. Newly Discovered Ring-Moat Dome Structures in the Lunar Maria: Possible Origins and Implications

    NASA Astrophysics Data System (ADS)

    Zhang, Feng; Head, James W.; Basilevsky, Alexander T.; Bugiolacchi, Roberto; Komatsu, Goro; Wilson, Lionel; Fa, Wenzhe; Zhu, Meng-Hua

    2017-09-01

    We report on a newly discovered morphological feature on the lunar surface, here named Ring-Moat Dome Structure (RMDS). These low domes (a few meters to 20 m height with slopes <5°) are typically surrounded by narrow annular depressions or moats. We mapped about 2,600 RMDSs in the lunar maria with diameters ranging from tens to hundreds of meters. Four candidate hypotheses for their origin involving volcanism are considered. We currently favor a mechanism for the formation of the RMDS related to modification of the initial lava flows through inflated flow squeeze-ups and/or extrusion of magmatic foams below a cooling lava flow surface. These newly discovered features provide new insights into the nature of emplacement of lunar lava flows, suggesting that in the waning stages of a dike emplacement event, magmatic foams can be produced, extrude to the surface as the dike closes, and break through the upper lava flow thermal boundary layer (crust) to form foam mounds and surrounding moats.

  19. Approaches for assessing and discovering protein interactions in cancer

    PubMed Central

    Mohammed, Hisham; Carroll, Jason S.

    2013-01-01

    Significant insight into the function of proteins, can be delineated by discovering and characterising interacting proteins. There are numerous methods for the discovery of unknown associated protein networks, with purification of the bait (the protein of interest) followed by Mass Spectrometry (MS) as a common theme. In recent years, advances have permitted the purification of endogenous proteins and methods for scaling down starting material. As such, approaches for rapid, unbiased identification of protein interactomes are becoming a standard tool in the researchers toolbox, rather than a technique that is only available to specialists. This review will highlight some of the recent technical advances in proteomic based discovery approaches, the pros and cons of various methods and some of the key findings in cancer related systems. PMID:24072816

  20. Los Alamos Discovers Super Efficient Solar Using Perovskite Crystals

    ScienceCinema

    Mohite, Aditya; Nie, Wanyi

    2018-05-11

    State-of-the-art photovoltaics using high-purity, large-area, wafer-scale single-crystalline semiconductors grown by sophisticated, high temperature crystal-growth processes offer promising routes for developing low-cost, solar-based clean global energy solutions for the future. Solar cells composed of the recently discovered material organic-inorganic perovskites offer the efficiency of silicon, yet suffer from a variety of deficiencies limiting the commercial viability of perovskite photovoltaic technology. In research to appear in Science, Los Alamos National Laboratory researchers reveal a new solution-based hot-casting technique that eliminates these limitations, one that allows for the growth of high-quality, large-area, millimeter-scale perovskite crystals and demonstrates that highly efficient and reproducible solar cells with reduced trap assisted recombination can be realized.

  1. Sunlight at Southall Green. Dr. Ingen Housz discovers photosynthesis.

    PubMed

    Norman; Beale, E

    2001-01-01

    In the following fictitious conversation, Dr. Jan Ingen Housz (1730-1799), the Dutch physician and natural philosopher, describes to William Temple Franklin (1760-1823), the grandson of Benjamin Franklin, how in 1779 he discovered the paramount role of sunlight in what we now call photosynthesis (Wiesner 1905; Van der Pas 1981; Reed 1949; Beale and Beale 1999). The two men, together with the English law reformer Samuel Romilly, were dinner guests of the First Marquis of Lansdowne at Lansdowne House on Wednesday 2 February 1791 (Bowood House Archives 1791). As far as possible we use their own recorded words and phrases, employing surviving manuscripts as a lexicon. Additional biographical and geographical details are provided in an Appendix, and all sources are listed in the References.

  2. Discovering causal signaling pathways through gene-expression patterns

    PubMed Central

    Parikh, Jignesh R.; Klinger, Bertram; Xia, Yu; Marto, Jarrod A.; Blüthgen, Nils

    2010-01-01

    High-throughput gene-expression studies result in lists of differentially expressed genes. Most current meta-analyses of these gene lists include searching for significant membership of the translated proteins in various signaling pathways. However, such membership enrichment algorithms do not provide insight into which pathways caused the genes to be differentially expressed in the first place. Here, we present an intuitive approach for discovering upstream signaling pathways responsible for regulating these differentially expressed genes. We identify consistently regulated signature genes specific for signal transduction pathways from a panel of single-pathway perturbation experiments. An algorithm that detects overrepresentation of these signature genes in a gene group of interest is used to infer the signaling pathway responsible for regulation. We expose our novel resource and algorithm through a web server called SPEED: Signaling Pathway Enrichment using Experimental Data sets. SPEED can be freely accessed at http://speed.sys-bio.net/. PMID:20494976

  3. David Levy's Guide to Observing and Discovering Comets

    NASA Astrophysics Data System (ADS)

    Levy, David H.

    2003-05-01

    Preface; Part I. Why Observe Comets?: 1. Of history, superstition, magic, and science; 2. Comet science progresses; Part II. Discovering Comets: 3. Comet searching begins; 4. Tails and trails; 5. Comet searching in the twentieth century; 6. How I search for comets; 7. Searching for comets photographically; 8. Searching for comets with CCDs; 9. Comet hunting by reading; 10. Hunting for sungrazers over the Internet; 11. What to do when you think you've found a comet; Part III. A New Way of Looking at Comets: 12. When comets hit planets; 13. The future of visual comet hunting; Part IV. How to Observe Comets: 14. An introduction to comet hunting; 15. Visual observing of comets; 16. Estimating the magnitude of a comet; 17. Taking a picture of a comet; 18. Measuring where a comet is in the sky; Part V. Closing Notes: 19. My passion for comets.

  4. Quantify spatial relations to discover handwritten graphical symbols

    NASA Astrophysics Data System (ADS)

    Li, Jinpeng; Mouchère, Harold; Viard-Gaudin, Christian

    2012-01-01

    To model a handwritten graphical language, spatial relations describe how the strokes are positioned in the 2-dimensional space. Most of existing handwriting recognition systems make use of some predefined spatial relations. However, considering a complex graphical language, it is hard to express manually all the spatial relations. Another possibility would be to use a clustering technique to discover the spatial relations. In this paper, we discuss how to create a relational graph between strokes (nodes) labeled with graphemes in a graphical language. Then we vectorize spatial relations (edges) for clustering and quantization. As the targeted application, we extract the repetitive sub-graphs (graphical symbols) composed of graphemes and learned spatial relations. On two handwriting databases, a simple mathematical expression database and a complex flowchart database, the unsupervised spatial relations outperform the predefined spatial relations. In addition, we visualize the frequent patterns on two text-lines containing Chinese characters.

  5. Discovering governing equations from data by sparse identification of nonlinear dynamics

    NASA Astrophysics Data System (ADS)

    Brunton, Steven

    The ability to discover physical laws and governing equations from data is one of humankind's greatest intellectual achievements. A quantitative understanding of dynamic constraints and balances in nature has facilitated rapid development of knowledge and enabled advanced technology, including aircraft, combustion engines, satellites, and electrical power. There are many more critical data-driven problems, such as understanding cognition from neural recordings, inferring patterns in climate, determining stability of financial markets, predicting and suppressing the spread of disease, and controlling turbulence for greener transportation and energy. With abundant data and elusive laws, data-driven discovery of dynamics will continue to play an increasingly important role in these efforts. This work develops a general framework to discover the governing equations underlying a dynamical system simply from data measurements, leveraging advances in sparsity-promoting techniques and machine learning. The resulting models are parsimonious, balancing model complexity with descriptive ability while avoiding overfitting. The only assumption about the structure of the model is that there are only a few important terms that govern the dynamics, so that the equations are sparse in the space of possible functions. This perspective, combining dynamical systems with machine learning and sparse sensing, is explored with the overarching goal of real-time closed-loop feedback control of complex systems. This is joint work with Joshua L. Proctor and J. Nathan Kutz. Video Abstract: https://www.youtube.com/watch?v=gSCa78TIldg

  6. KEGS Transients Discovered by a Pan-STARRS1 Search of the Kepler Campaign 16 Field

    NASA Astrophysics Data System (ADS)

    Smith, K. W.; Rest, A.; Tucker, B. E.; Garnavich, P. M.; Margheim, S.; Kasen, D.; Olling, R.; Shaya, E.; Narayan, G.; Villar, A.; Forster, F.; Mushotzky, R.; Zenteno, A.; James, D.; Smith, R. Chris; Dotson, J. L.; Barentsen, G.; Gully-Santiago, M.; Smartt, S. J.; Wright, D. E.; Huber, M.; Chambers, K. C.; Flewelling, H.; Willman, M.; Schultz, A.; Magnier, E.; Waters, C.; Bulger, J.; Wainscoat, R. J.

    2018-01-01

    We report the following transients discovered by Pan-STARRS1 during a targeted search of the Kepler Campaign 16 field as part of the K2 Extragalactic Survey (KEGS) for Transients (see http://www.mso.anu.edu.au/kegs/).

  7. A novel approach for discovering condition-specific correlations of gene expressions within biological pathways by using cloud computing technology.

    PubMed

    Chang, Tzu-Hao; Wu, Shih-Lin; Wang, Wei-Jen; Horng, Jorng-Tzong; Chang, Cheng-Wei

    2014-01-01

    Microarrays are widely used to assess gene expressions. Most microarray studies focus primarily on identifying differential gene expressions between conditions (e.g., cancer versus normal cells), for discovering the major factors that cause diseases. Because previous studies have not identified the correlations of differential gene expression between conditions, crucial but abnormal regulations that cause diseases might have been disregarded. This paper proposes an approach for discovering the condition-specific correlations of gene expressions within biological pathways. Because analyzing gene expression correlations is time consuming, an Apache Hadoop cloud computing platform was implemented. Three microarray data sets of breast cancer were collected from the Gene Expression Omnibus, and pathway information from the Kyoto Encyclopedia of Genes and Genomes was applied for discovering meaningful biological correlations. The results showed that adopting the Hadoop platform considerably decreased the computation time. Several correlations of differential gene expressions were discovered between the relapse and nonrelapse breast cancer samples, and most of them were involved in cancer regulation and cancer-related pathways. The results showed that breast cancer recurrence might be highly associated with the abnormal regulations of these gene pairs, rather than with their individual expression levels. The proposed method was computationally efficient and reliable, and stable results were obtained when different data sets were used. The proposed method is effective in identifying meaningful biological regulation patterns between conditions.

  8. Newly Discovered Clouds Found Floating High Above Milky Way

    NASA Astrophysics Data System (ADS)

    2002-10-01

    GREEN BANK, WV -- New studies with the National Science Foundation's Robert C. Byrd Green Bank Telescope (GBT) have revealed a previously unknown population of discrete hydrogen clouds in the gaseous halo that surrounds the Milky Way Galaxy. These clouds were discovered in the transition zone between the Milky Way and intergalactic space, and provide tantalizing evidence that supernova-powered "galactic fountains" continually blast superheated hydrogen gas into our Galactic suburbs. Hydrogen Clouds Graphic Artist's Rendering of the Milky Way (background) with insert showing GBT image of newly-discovered clouds of Hydrogen gas above the plane of the Galaxy. Credit: Kirk Woellert/National Science Foundation. Extending far above the star-filled disk of the Milky Way is an atmosphere, or halo, of hydrogen gas. "By studying this halo, we can learn a great deal about the processes that are going on inside our Galaxy as well as beyond its borders," said Jay Lockman, an astronomer with the National Radio Astronomy Observatory (NRAO) in Green Bank, West Virginia. "It has remained a mystery, however, how this halo formed and what has prevented gravitational forces from collapsing the gas into a thin layer long ago." Some astronomers have speculated that this gas is distributed as a diffuse mist held up by either magnetic fields or cosmic rays streaming out of the plane of the Milky Way. Others believed that it is made of innumerable long-lived hydrogen clouds bobbing up and down like balls tossed by a juggler. Early observations with other telescopes discovered that there was some neutral hydrogen gas floating far above the Galaxy's plane, but these instruments were not sensitive enough to reveal any structure or resolve questions about its origin. Lockman's studies for the first time show a clear picture of the structure of the gas. Rather than a mist, the halo is in fact full of discrete clouds, each containing 50-to-100 solar masses of hydrogen and averaging about 100

  9. Stem-Like Memory T Cells Are Discovered | Center for Cancer Research

    Cancer.gov

    T cells are the white blood cells that are the body’s first line of attack against foreign invaders.  When designing immunotherapies to treat cancer the goal is to prolong the immune response of T cells a bit beyond what the body normally does when a bacterium or a virus is encountered.   Nicholas P. Restifo, M.D., working with Luca Gattinoni, M.D., and other colleagues in CCR’s Surgery Branch recently discovered a subset within the human T cell population that may help clinicians to do just  this.

  10. Teach-Discover-Treat (TDT): Collaborative Computational Drug Discovery for Neglected Diseases

    PubMed Central

    Jansen, Johanna M.; Cornell, Wendy; Tseng, Y. Jane; Amaro, Rommie E.

    2012-01-01

    Teach – Discover – Treat (TDT) is an initiative to promote the development and sharing of computational tools solicited through a competition with the aim to impact education and collaborative drug discovery for neglected diseases. Collaboration, multidisciplinary integration, and innovation are essential for successful drug discovery. This requires a workforce that is trained in state-of-the-art workflows and equipped with the ability to collaborate on platforms that are accessible and free. The TDT competition solicits high quality computational workflows for neglected disease targets, using freely available, open access tools. PMID:23085175

  11. Who Can Be a Hero?: Helen Keller, Annie Sullivan, and Discovering Strength of Character

    ERIC Educational Resources Information Center

    Morin, Kathleen Dunlevy; Bernheim, Rachel Oestreicher

    2005-01-01

    "A Study of Heroes: Making a Difference Using Your Heart, Intellect, and Talents" is a program originally developed in diverse school communities. Students learn to distinguish between the concepts of hero and celebrity and to discover the real heroes in their own families, schools, communities, and most importantly--within themselves. This…

  12. Preparing for TESS: Precision Ground-based Light-curves of Newly Discovered Transiting Exoplanets

    NASA Astrophysics Data System (ADS)

    Li, Yiting; Stefansson, Gudmundur; Mahadevan, Suvrath; Monson, Andy; Hebb, Leslie; Wisniewski, John; Huehnerhoff, Joseph

    2018-01-01

    NASA’s Transiting Exoplanet Survey Satellite (TESS), to be launched in early 2018, is expected to catalog a myriad of transiting exoplanet candidates ranging from Earth-sized to gas giants, orbiting a diverse range of stellar types in the solar neighborhood. In particular, TESS will find small planets orbiting the closest and brightest stars, and will enable detailed atmospheric characterizations of planets with current and future telescopes. In the TESS era, ground-based follow-up resources will play a critical role in validating and confirming the planetary nature of the candidates TESS will discover. Along with confirming the planetary nature of exoplanet transits, high precision ground-based transit observations allow us to put further constraints on exoplanet orbital parameters and transit timing variations. In this talk, we present new observations of transiting exoplanets recently discovered by the K2 mission, using the optical diffuser on the 3.5m ARC Telescope at Apache Point Observatory. These include observations of the mini-Neptunes K2-28b and K2-104b orbiting early-to-mid M-dwarfs. In addition, other recent transit observations performed using the robotic 30cm telescope at Las Campanas Observatory in Chile will be presented.

  13. Discovering Mira Ceti: Celestial Change and Cosmic Continuity

    NASA Astrophysics Data System (ADS)

    Hatch, Robert Alan

    In the short narrative that follows I introduce two new heroes. Although we begin with Fabricius's first sighting in 1596, the new pivot point in the drama is the collaboration between Hevelius and Boulliau that began around 1660. As it happens, Learned Europe paid little attention to Mira in the generation after the first scattered sightings of 1596, indeed, nearly 70 years passed before the New Star was given a working identity. Like Columbus discovering America, Fabricius and Holwarda saw different things - for convenience, I call them Fabricius's Star and Holwarda's Star. Hevelius's Historiola (Danzig, 1662) and Boulliau's Ad astronomos (Paris, 1667) presented a different vision. It made Mira famous. As I shall argue, if Hevelius gave Mira a history, Boulliau gave Mira a future.5 In the end, the New Star not only challenged the ancient cosmos, it became an enduring icon for the New Science, a returning reminder of celestial continuity and cosmic order.

  14. NASA's Van Allen Probes Discover a Surprise Circling Earth

    NASA Image and Video Library

    2017-12-08

    Two giant swaths of radiation, known as the Van Allen Belts, surrounding Earth were discovered in 1958. In 2012, observations from the Van Allen Probes showed that a third belt can sometimes appear. The radiation is shown here in yellow, with green representing the spaces between the belts. Credit: NASA/Van Allen Probes/Goddard Space Flight Center To read more go to: www.nasa.gov/mission_pages/rbsp/news/third-belt.html NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  15. Discovering Targets of Non-enzymatic Acylation by Thioester Reactivity Profiling | Center for Cancer Research

    Cancer.gov

    The cover image illuminates the non-enzymatic “ghost writers” of lysine acylation. Meier et al. detail the development of a chemoproteomic strategy that harnesses thioester reactivity to discover candidate cellular targets of non-enzymatic acylation. Application of this approach reveals that glycolytic enzymes can be strongly inhibited by reactive thioesters, including the

  16. Timing of Five PALFA-discovered Millisecond Pulsars

    NASA Astrophysics Data System (ADS)

    Stovall, K.; Allen, B.; Bogdanov, S.; Brazier, A.; Camilo, F.; Cardoso, F.; Chatterjee, S.; Cordes, J. M.; Crawford, F.; Deneva, J. S.; Ferdman, R.; Freire, P. C. C.; Hessels, J. W. T.; Jenet, F.; Kaplan, D. L.; Karako-Argaman, C.; Kaspi, V. M.; Knispel, B.; Kotulla, R.; Lazarus, P.; Lee, K. J.; van Leeuwen, J.; Lynch, R.; Lyne, A. G.; Madsen, E.; McLaughlin, M. A.; Patel, C.; Ransom, S. M.; Scholz, P.; Siemens, X.; Stairs, I. H.; Stappers, B. W.; Swiggum, J.; Zhu, W. W.; Venkataraman, A.

    2016-12-01

    We report the discovery and timing results for five millisecond pulsars (MSPs) from the Arecibo PALFA survey: PSRs J1906+0055, J1914+0659, J1933+1726, J1938+2516, and J1957+2516. Timing observations of the five pulsars were conducted with the Arecibo and Lovell telescopes for time spans ranging from 1.5 to 3.3 years. All of the MSPs except one (PSR J1914+0659) are in binary systems with low eccentricities. PSR J1957+2516 is likely a redback pulsar, with a ˜ 0.1 {M}⊙ companion and possible eclipses that last ˜10% of the orbit. The position of PSR J1957+2516 is also coincident with a near-infrared source. All five MSPs are distant (\\gt 3.1 kpc) as determined from their dispersion measures, and none of them show evidence of γ-ray pulsations in a fold of Fermi Gamma-Ray Space Telescope data. These five MSPs bring the total number of MSPs discovered by the PALFA survey to 26 and further demonstrate the power of this survey in finding distant, highly dispersed MSPs deep in the Galactic plane.

  17. A Systematic Mid-Infrared Survey of A Sample of Tidal Disruption Events Discovered by ZTF

    NASA Astrophysics Data System (ADS)

    Yan, Lin; Van, Sjoert; Kulkarni, Shri; Kasliwal, Mansi; Gezari, Suvi; Cenko, Brad; Blagorodnova, Nadia; Hung, Tiara

    2017-12-01

    Zwicky Transient Facility (ZTF) saw its first light (press release on Nov 14, 2017) and is currently in the commissioning phase. The science operation is scheduled to start on Feb 1, 2018. Based on the data from Palomar Transient Factory (PTF), ZTF is expected to discover 30 new tidal disruption events (TDE) in the centers of galaxies containing supermassive blackholes. TDEs are rare transient events, and have only been discovered in recent years by large area transient surveys. Observations of optically discovered TDEs appear to show common characteristics, including blackbody temperatures of a few 10,000K, derived bolometric peak luminosities of several 10^43 - 10^44 erg/s, and photospheric radius of 10^15 - 10^16 cm. These properties are in conflict with the classic TDE model predictions, which suggest an order of magnitude higher temperature and peak luminosity. One proposed explanation is the possible existence of a reprocessing gas layer which absorbs X-ray, UV/optical photons and produces a cooler spectral energy distribution (SED). So far, there are only two published mid-IR light curves of TDEs, each with two epochal data. To solve this mystery, we require higher cadence Spitzer observations of a sample of uniformly selected TDEs. Next year is the only opportunity to obtain the critical observations because Spitzer is expected to operate only to March 2019. We request 24.1 hours of Spitzer time to observe 7 ZTF TDEs. This will produce a unique legacy dataset for many future studies of physics of TDEs.

  18. "Discover Diversities": A Trans-Inter-Disciplinary (SEMEP) Project for Different School Levels and Teachers' Training

    ERIC Educational Resources Information Center

    Pilo, Miranda; Gavio, Brigitte; Scaldarella, Elda; Di Carlo, Caterina; Martorano, Daniela

    2011-01-01

    "Discover Diversities" is a wide thematic developed within the SEMEP (South-Eastern Mediterranean Environmental Project) project, supported by UNESCO (United Nation Education, Science and Culture Organization). SEMEP is essentially a project for science education, focusing on Mediterranean environment. As the Mediterranean has been the…

  19. The navel orangeworm, Amyelois transtilla (Walker) (Lepidoptera: Pyralidae) discovered in northeastern Mexico feeding on Sapindaceae

    USDA-ARS?s Scientific Manuscript database

    Amyelois transitella (Walker) (Lepidoptera: Pyralidae), the navel orangeworm, is an important pest of a wide variety fruits and their seeds. We discovered and report for the first time A. transitella feeding on Sapindaceae in wild populations of U. speciosa (Endl.) in northeastern Mexico. We provid...

  20. Discovering governing equations from data by sparse identification of nonlinear dynamical systems

    PubMed Central

    Brunton, Steven L.; Proctor, Joshua L.; Kutz, J. Nathan

    2016-01-01

    Extracting governing equations from data is a central challenge in many diverse areas of science and engineering. Data are abundant whereas models often remain elusive, as in climate science, neuroscience, ecology, finance, and epidemiology, to name only a few examples. In this work, we combine sparsity-promoting techniques and machine learning with nonlinear dynamical systems to discover governing equations from noisy measurement data. The only assumption about the structure of the model is that there are only a few important terms that govern the dynamics, so that the equations are sparse in the space of possible functions; this assumption holds for many physical systems in an appropriate basis. In particular, we use sparse regression to determine the fewest terms in the dynamic governing equations required to accurately represent the data. This results in parsimonious models that balance accuracy with model complexity to avoid overfitting. We demonstrate the algorithm on a wide range of problems, from simple canonical systems, including linear and nonlinear oscillators and the chaotic Lorenz system, to the fluid vortex shedding behind an obstacle. The fluid example illustrates the ability of this method to discover the underlying dynamics of a system that took experts in the community nearly 30 years to resolve. We also show that this method generalizes to parameterized systems and systems that are time-varying or have external forcing. PMID:27035946

  1. Discovering governing equations from data by sparse identification of nonlinear dynamical systems.

    PubMed

    Brunton, Steven L; Proctor, Joshua L; Kutz, J Nathan

    2016-04-12

    Extracting governing equations from data is a central challenge in many diverse areas of science and engineering. Data are abundant whereas models often remain elusive, as in climate science, neuroscience, ecology, finance, and epidemiology, to name only a few examples. In this work, we combine sparsity-promoting techniques and machine learning with nonlinear dynamical systems to discover governing equations from noisy measurement data. The only assumption about the structure of the model is that there are only a few important terms that govern the dynamics, so that the equations are sparse in the space of possible functions; this assumption holds for many physical systems in an appropriate basis. In particular, we use sparse regression to determine the fewest terms in the dynamic governing equations required to accurately represent the data. This results in parsimonious models that balance accuracy with model complexity to avoid overfitting. We demonstrate the algorithm on a wide range of problems, from simple canonical systems, including linear and nonlinear oscillators and the chaotic Lorenz system, to the fluid vortex shedding behind an obstacle. The fluid example illustrates the ability of this method to discover the underlying dynamics of a system that took experts in the community nearly 30 years to resolve. We also show that this method generalizes to parameterized systems and systems that are time-varying or have external forcing.

  2. bioGUID: resolving, discovering, and minting identifiers for biodiversity informatics

    PubMed Central

    Page, Roderic DM

    2009-01-01

    Background Linking together the data of interest to biodiversity researchers (including specimen records, images, taxonomic names, and DNA sequences) requires services that can mint, resolve, and discover globally unique identifiers (including, but not limited to, DOIs, HTTP URIs, and LSIDs). Results bioGUID implements a range of services, the core ones being an OpenURL resolver for bibliographic resources, and a LSID resolver. The LSID resolver supports Linked Data-friendly resolution using HTTP 303 redirects and content negotiation. Additional services include journal ISSN look-up, author name matching, and a tool to monitor the status of biodiversity data providers. Conclusion bioGUID is available at . Source code is available from . PMID:19900301

  3. PTF discovers and follows-up nearby, young, Type II supernova

    NASA Astrophysics Data System (ADS)

    Kasliwal, M. M.; Quimby, R. M.; Ofek, E. O.; Kulkarni, S. R.; Gal-Yam, A.; Arcavi, I.; Green, Y.; Walker, E.; Mazzali, P.; Nugent, P. E.; Poznanski, D.; Howell, D. A.; Dilday, B.; Fox, D. B.

    2010-09-01

    On UT 2010 Sep 15.243, the Palomar Transient Factory discovered an optical transient, PTF10vdl at RA(J2000) = 23:05:49.001 and DEC(J2000)=03:31:20.50 near NGC 7483. We obtained Target Of Opportunity spectra with Gemini-S/GMOS (PI Kasliwal) on Sep 16.29. The spectrum was extremely blue (f_nu proportional to nu^4.5) and nearly featureless. We further obtained a spectrum with the TNG/DOLORES (PI Walker) on Sep 17.40 and P-Cygni profiles of four Balmer lines were clearly visible, consistent with the redshift of NGC 7483, suggesting this is a Type II supernova.

  4. Temperate Lakes Discovered on Titan

    NASA Astrophysics Data System (ADS)

    Vixie, Graham; Barnes, Jason W.; Jackson, Brian; Wilson, Paul

    2012-04-01

    We have discovered two temperate lakes on Titan using Cassini's Visual and Infrared Mapping Spectrometer (VIMS). Three key features help to identify these surface features as lakes: morphology, albedo, and specular reflection. The presence of lakes at the mid-latitudes mean liquid can accumulate and remain stable outside of the poles. We first identify a lake surface by looking for possible shorelines with a lacustrine morphology. Then, we apply a simple atmospheric correction that produces an approximate surface albedo. Next, we prepare cylindrical projection maps of the brightness of the sky as seen from any points on the surface to identify specular reflections. Our techniques can then be applied to other areas, such as Arrakis Planitia, to test for liquid. Currently, all the known lakes on Titan are concentrated at the poles. Lakes have been suggested in the tropic zone by Griffith et al. Our discovery of non-transient, temperate lakes has important implications for Titan's hydrologic cycle. Clouds have been recorded accumulating in the mid-latitudes and areas have been darkened by rainfall but later brightened after evaporation (Turtle et al. 2011). Stable temperate lakes would affect total rainfall, liquid accumulation, evaporation rates, and infiltration. Polaznik Macula (Figure 1) is a great candidate for lake filling, evaporation rates, and stability. References: Griffith, C., et al.: "Evidence for Lakes on Titan's Tropical Surface". AAS/Division for Planetary Sciences Meeting Abstracts #42, Vol. 42, pp. 1077, 2010. Turtle, E. P., et al.: "Rapid and Extensive Surface Changes Near Titan's Equator: Evidence of April Showers". Science, Vol. 331, pp. 1414-, 2011. Figure 1: Polaznik Macula is the large, dark area central to the figure. The encircled dark blue areas represent positively identified lake regions in the T66 flyby. The light blue areas represent lake candidates still under analysis. The green circle marks a non-lake surface feature enclosed by a

  5. Discovering Trigonometric Relationships Implied by the Law of Sines and the Law of Cosines

    ERIC Educational Resources Information Center

    Skurnick, Ronald; Javadi, Mohammad

    2006-01-01

    The Law of Sines and The Law of Cosines are of paramount importance in the field of trigonometry because these two theorems establish relationships satisfied by the three sides and the three angles of any triangle. In this article, the authors use these two laws to discover a host of other trigonometric relationships that exist within any…

  6. Discovering Socialization Priorities in Turkish Society Based on What the Value of Success Means

    ERIC Educational Resources Information Center

    Aypay, Ayse

    2016-01-01

    The purpose of this study is to discover socialization priorities based on what the value of success means in Turkish society. For this purpose, two related scales have been developed to identify the beliefs of adults in Turkish society towards defining the value of success and the areas in which adults perceive themselves as successful based on…

  7. Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity

    PubMed Central

    Jahanshad, Neda; Rajagopalan, Priya; Hua, Xue; Hibar, Derrek P.; Nir, Talia M.; Toga, Arthur W.; Jack, Clifford R.; Saykin, Andrew J.; Green, Robert C.; Weiner, Michael W.; Medland, Sarah E.; Montgomery, Grant W.; Hansell, Narelle K.; McMahon, Katie L.; de Zubicaray, Greig I.; Martin, Nicholas G.; Wright, Margaret J.; Thompson, Paul M.; Weiner, Michael; Aisen, Paul; Weiner, Michael; Aisen, Paul; Petersen, Ronald; Jack, Clifford R.; Jagust, William; Trojanowski, John Q.; Toga, Arthur W.; Beckett, Laurel; Green, Robert C.; Saykin, Andrew J.; Morris, John; Liu, Enchi; Green, Robert C.; Montine, Tom; Petersen, Ronald; Aisen, Paul; Gamst, Anthony; Thomas, Ronald G.; Donohue, Michael; Walter, Sarah; Gessert, Devon; Sather, Tamie; Beckett, Laurel; Harvey, Danielle; Gamst, Anthony; Donohue, Michael; Kornak, John; Jack, Clifford R.; Dale, Anders; Bernstein, Matthew; Felmlee, Joel; Fox, Nick; Thompson, Paul; Schuff, Norbert; Alexander, Gene; DeCarli, Charles; Jagust, William; Bandy, Dan; Koeppe, Robert A.; Foster, Norm; Reiman, Eric M.; Chen, Kewei; Mathis, Chet; Morris, John; Cairns, Nigel J.; Taylor-Reinwald, Lisa; Trojanowki, J.Q.; Shaw, Les; Lee, Virginia M.Y.; Korecka, Magdalena; Toga, Arthur W.; Crawford, Karen; Neu, Scott; Saykin, Andrew J.; Foroud, Tatiana M.; Potkin, Steven; Shen, Li; Khachaturian, Zaven; Frank, Richard; Snyder, Peter J.; Molchan, Susan; Kaye, Jeffrey; Quinn, Joseph; Lind, Betty; Dolen, Sara; Schneider, Lon S.; Pawluczyk, Sonia; Spann, Bryan M.; Brewer, James; Vanderswag, Helen; Heidebrink, Judith L.; Lord, Joanne L.; Petersen, Ronald; Johnson, Kris; Doody, Rachelle S.; Villanueva-Meyer, Javier; Chowdhury, Munir; Stern, Yaakov; Honig, Lawrence S.; Bell, Karen L.; Morris, John C.; Ances, Beau; Carroll, Maria; Leon, Sue; Mintun, Mark A.; Schneider, Stacy; Marson, Daniel; Griffith, Randall; Clark, David; Grossman, Hillel; Mitsis, Effie; Romirowsky, Aliza; deToledo-Morrell, Leyla; Shah, Raj C.; Duara, Ranjan; Varon, Daniel; Roberts, Peggy; Albert, Marilyn; Onyike, Chiadi; Kielb, Stephanie; Rusinek, Henry; de Leon, Mony J.; Glodzik, Lidia; De Santi, Susan; Doraiswamy, P. Murali; Petrella, Jeffrey R.; Coleman, R. Edward; Arnold, Steven E.; Karlawish, Jason H.; Wolk, David; Smith, Charles D.; Jicha, Greg; Hardy, Peter; Lopez, Oscar L.; Oakley, MaryAnn; Simpson, Donna M.; Porsteinsson, Anton P.; Goldstein, Bonnie S.; Martin, Kim; Makino, Kelly M.; Ismail, M. Saleem; Brand, Connie; Mulnard, Ruth A.; Thai, Gaby; Mc-Adams-Ortiz, Catherine; Womack, Kyle; Mathews, Dana; Quiceno, Mary; Diaz-Arrastia, Ramon; King, Richard; Weiner, Myron; Martin-Cook, Kristen; DeVous, Michael; Levey, Allan I.; Lah, James J.; Cellar, Janet S.; Burns, Jeffrey M.; Anderson, Heather S.; Swerdlow, Russell H.; Apostolova, Liana; Lu, Po H.; Bartzokis, George; Silverman, Daniel H.S.; Graff-Radford, Neill R.; Parfitt, Francine; Johnson, Heather; Farlow, Martin R.; Hake, Ann Marie; Matthews, Brandy R.; Herring, Scott; van Dyck, Christopher H.; Carson, Richard E.; MacAvoy, Martha G.; Chertkow, Howard; Bergman, Howard; Hosein, Chris; Black, Sandra; Stefanovic, Bojana; Caldwell, Curtis; Hsiung, Ging-Yuek Robin; Feldman, Howard; Mudge, Benita; Assaly, Michele; Kertesz, Andrew; Rogers, John; Trost, Dick; Bernick, Charles; Munic, Donna; Kerwin, Diana; Mesulam, Marek-Marsel; Lipowski, Kristina; Wu, Chuang-Kuo; Johnson, Nancy; Sadowsky, Carl; Martinez, Walter; Villena, Teresa; Turner, Raymond Scott; Johnson, Kathleen; Reynolds, Brigid; Sperling, Reisa A.; Johnson, Keith A.; Marshall, Gad; Frey, Meghan; Yesavage, Jerome; Taylor, Joy L.; Lane, Barton; Rosen, Allyson; Tinklenberg, Jared; Sabbagh, Marwan; Belden, Christine; Jacobson, Sandra; Kowall, Neil; Killiany, Ronald; Budson, Andrew E.; Norbash, Alexander; Johnson, Patricia Lynn; Obisesan, Thomas O.; Wolday, Saba; Bwayo, Salome K.; Lerner, Alan; Hudson, Leon; Ogrocki, Paula; Fletcher, Evan; Carmichael, Owen; Olichney, John; DeCarli, Charles; Kittur, Smita; Borrie, Michael; Lee, T.-Y.; Bartha, Rob; Johnson, Sterling; Asthana, Sanjay; Carlsson, Cynthia M.; Potkin, Steven G.; Preda, Adrian; Nguyen, Dana; Tariot, Pierre; Fleisher, Adam; Reeder, Stephanie; Bates, Vernice; Capote, Horacio; Rainka, Michelle; Scharre, Douglas W.; Kataki, Maria; Zimmerman, Earl A.; Celmins, Dzintra; Brown, Alice D.; Pearlson, Godfrey D.; Blank, Karen; Anderson, Karen; Saykin, Andrew J.; Santulli, Robert B.; Schwartz, Eben S.; Sink, Kaycee M.; Williamson, Jeff D.; Garg, Pradeep; Watkins, Franklin; Ott, Brian R.; Querfurth, Henry; Tremont, Geoffrey; Salloway, Stephen; Malloy, Paul; Correia, Stephen; Rosen, Howard J.; Miller, Bruce L.; Mintzer, Jacobo; Longmire, Crystal Flynn; Spicer, Kenneth; Finger, Elizabeth; Rachinsky, Irina; Rogers, John; Kertesz, Andrew; Drost, Dick

    2013-01-01

    Aberrant connectivity is implicated in many neurological and psychiatric disorders, including Alzheimer’s disease and schizophrenia. However, other than a few disease-associated candidate genes, we know little about the degree to which genetics play a role in the brain networks; we know even less about specific genes that influence brain connections. Twin and family-based studies can generate estimates of overall genetic influences on a trait, but genome-wide association scans (GWASs) can screen the genome for specific variants influencing the brain or risk for disease. To identify the heritability of various brain connections, we scanned healthy young adult twins with high-field, high-angular resolution diffusion MRI. We adapted GWASs to screen the brain’s connectivity pattern, allowing us to discover genetic variants that affect the human brain’s wiring. The association of connectivity with the SPON1 variant at rs2618516 on chromosome 11 (11p15.2) reached connectome-wide, genome-wide significance after stringent statistical corrections were enforced, and it was replicated in an independent subsample. rs2618516 was shown to affect brain structure in an elderly population with varying degrees of dementia. Older people who carried the connectivity variant had significantly milder clinical dementia scores and lower risk of Alzheimer’s disease. As a posthoc analysis, we conducted GWASs on several organizational and topological network measures derived from the matrices to discover variants in and around genes associated with autism (MACROD2), development (NEDD4), and mental retardation (UBE2A) significantly associated with connectivity. Connectome-wide, genome-wide screening offers substantial promise to discover genes affecting brain connectivity and risk for brain diseases. PMID:23471985

  8. Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.

    PubMed

    Jahanshad, Neda; Rajagopalan, Priya; Hua, Xue; Hibar, Derrek P; Nir, Talia M; Toga, Arthur W; Jack, Clifford R; Saykin, Andrew J; Green, Robert C; Weiner, Michael W; Medland, Sarah E; Montgomery, Grant W; Hansell, Narelle K; McMahon, Katie L; de Zubicaray, Greig I; Martin, Nicholas G; Wright, Margaret J; Thompson, Paul M

    2013-03-19

    Aberrant connectivity is implicated in many neurological and psychiatric disorders, including Alzheimer's disease and schizophrenia. However, other than a few disease-associated candidate genes, we know little about the degree to which genetics play a role in the brain networks; we know even less about specific genes that influence brain connections. Twin and family-based studies can generate estimates of overall genetic influences on a trait, but genome-wide association scans (GWASs) can screen the genome for specific variants influencing the brain or risk for disease. To identify the heritability of various brain connections, we scanned healthy young adult twins with high-field, high-angular resolution diffusion MRI. We adapted GWASs to screen the brain's connectivity pattern, allowing us to discover genetic variants that affect the human brain's wiring. The association of connectivity with the SPON1 variant at rs2618516 on chromosome 11 (11p15.2) reached connectome-wide, genome-wide significance after stringent statistical corrections were enforced, and it was replicated in an independent subsample. rs2618516 was shown to affect brain structure in an elderly population with varying degrees of dementia. Older people who carried the connectivity variant had significantly milder clinical dementia scores and lower risk of Alzheimer's disease. As a posthoc analysis, we conducted GWASs on several organizational and topological network measures derived from the matrices to discover variants in and around genes associated with autism (MACROD2), development (NEDD4), and mental retardation (UBE2A) significantly associated with connectivity. Connectome-wide, genome-wide screening offers substantial promise to discover genes affecting brain connectivity and risk for brain diseases.

  9. Arsenic-Containing Phosphatidylcholines: A New Group of Arsenolipids Discovered in Herring Caviar.

    PubMed

    Viczek, Sandra A; Jensen, Kenneth B; Francesconi, Kevin A

    2016-04-18

    A new group of arsenolipids based on cell-membrane phosphatidylcholines has been discovered in herring caviar (fish roe). A combination of HPLC with elemental and molecular mass spectrometry was used to identify five arsenic-containing phosphatidylcholines; the same technique applied to salmon caviar identified an arsenic-containing phosphatidylethanolamine. The arsenic group in these membrane lipids might impart particular properties to the molecules not displayed by their non-arsenic analogues. Additionally, the new compounds have human health implications according to recent results showing high cytotoxicity for some arsenolipids.

  10. Systematic Serendipity: A Method to Discover the Anomalous

    NASA Astrophysics Data System (ADS)

    Giles, Daniel; Walkowicz, Lucianne

    2018-01-01

    One of the challenges in the era of big data astronomical surveys is identifying anomalous data, data that exhibits as-of-yet unobserved behavior. These data may result from systematic errors, extreme (or rare) forms of known phenomena, or, most interestingly, truly novel phenomena that has historically required a trained eye and often fortuitous circumstance to identify. We describe a method that uses machine clustering techniques to discover anomalous data in Kepler lightcurves, as a step towards systematizing the detection of novel phenomena in the era of LSST. As a proof of concept, we apply our anomaly detection method to Kepler data including Boyajian's Star (KIC 8462852). We examine quarters 4, 8, 11, and 16 of the Kepler data which contain Boyajian’s Star acting normally (quarters 4 and 11) and anomalously (quarters 8 and 16). We demonstrate that our method is capable of identifying Boyajian’s Star’s anomalous behavior in quarters of interest, and we further identify other anomalous light curves that exhibit a range of interesting variability.

  11. Chandra Observations of Three Newly Discovered Quadruply Gravitationally Lensed Quasars

    NASA Astrophysics Data System (ADS)

    Pooley, David

    2017-09-01

    Our previous work has shown the unique power of Chandra observations of quadruply gravitationally lensed quasars to address several fundamental astrophysical issues. We have used these observations to (1) determine the cause of flux ratio anomalies, (2) measure the sizes of quasar accretion disks, (3) determine the dark matter content of the lensing galaxies, and (4) measure the stellar mass-to-light ratio (in fact, this is the only way to measure the stellar mass-to-light ratio beyond the solar neighborhood). In all cases, the main source of uncertainty in our results is the small size of the sample of known quads; only 15 systems are available for study with Chandra. We propose Chandra observations of three newly discovered quads, increasing the sample size by 20%

  12. “Fine-Scale Application of the coupled WRF-CMAQ System to the 2011 DISCOVER-AQ Campaign”

    EPA Science Inventory

    The DISCOVER-AQ project (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality), is a joint collaboration between NASA, U.S. EPA and a number of other local organizations with the goal of characterizing air quality in ...

  13. Internal contamination of an irradiator discovered during security enhancement.

    PubMed

    Harvey, R P

    2014-08-01

    High-risk radioactive sources regulated under Increased Controls Regulations have been protected by licensed facilities, but the federal government has placed significant emphasis on these sources and has developed initiatives to assist radioactive material licensees. The Department of Energy's Global Threat Reduction Initiative (GTRI) Domestic Threat Reduction Program is a voluntary federally funded program for security enhancements of high-risk radiological material. During the hardening or security enhancement process by the United States Department of Energy (U.S. DOE) contractors, a small amount of radioactive contamination was discovered in a Cesium irradiator. Ultimately, it was decided to pursue disposal with U.S. DOE's Off-Site Recovery Program (OSRP). Radiological devices may have a leaking source or known internal contamination that may cause difficulty during security enhancement. If the licensee understands this, it may provide facilities the opportunity to plan and prepare for unusual circumstances.

  14. Arsenic‐Containing Phosphatidylcholines: A New Group of Arsenolipids Discovered in Herring Caviar

    PubMed Central

    Viczek, Sandra A.; Francesconi, Kevin A.

    2016-01-01

    Abstract A new group of arsenolipids based on cell‐membrane phosphatidylcholines has been discovered in herring caviar (fish roe). A combination of HPLC with elemental and molecular mass spectrometry was used to identify five arsenic‐containing phosphatidylcholines; the same technique applied to salmon caviar identified an arsenic‐containing phosphatidylethanolamine. The arsenic group in these membrane lipids might impart particular properties to the molecules not displayed by their non‐arsenic analogues. Additionally, the new compounds have human health implications according to recent results showing high cytotoxicity for some arsenolipids. PMID:26996517

  15. Arsenic‐Containing Phosphatidylcholines: A New Group of Arsenolipids Discovered in Herring Caviar

    PubMed Central

    Viczek, Sandra A.; Francesconi, Kevin A.

    2016-01-01

    Abstract A new group of arsenolipids based on cell‐membrane phosphatidylcholines has been discovered in herring caviar (fish roe). A combination of HPLC with elemental and molecular mass spectrometry was used to identify five arsenic‐containing phosphatidylcholines; the same technique applied to salmon caviar identified an arsenic‐containing phosphatidylethanolamine. The arsenic group in these membrane lipids might impart particular properties to the molecules not displayed by their non‐arsenic analogues. Additionally, the new compounds have human health implications according to recent results showing high cytotoxicity for some arsenolipids. PMID:27478276

  16. Beyond botany to genetic resource preservation: the S. P. Vander Kloet Vaccinium L. collections

    USDA-ARS?s Scientific Manuscript database

    Dr. S. P. Vander Kloet, botanist, traveled the world examining and obtaining specimens to redefine infrageneric taxonomic units within Vaccinium L., family Ericaceae. Besides his botanical treatises, his legacy includes herbarium voucher specimens and ex situ genetic resource collections including a...

  17. Thalassosamide, a Siderophore Discovered from the Marine-Derived Bacterium Thalassospira profundimaris.

    PubMed

    Zhang, Fan; Barns, Kenneth; Hoffmann, F Michael; Braun, Doug R; Andes, David R; Bugni, Tim S

    2017-09-22

    Here we describe the rapid identification and prioritization of novel active marine natural products using an improved dereplication strategy. During the course of our screening of marine natural product libraries, a new cyclic trihydroxamate compound, thalassosamide, was discovered from the α-proteobacterium Thalassospira profundimaris. Its structure was determined by 2D NMR and MS/MS experiments, and the absolute configuration of the lysine-derived units was established by Marfey's analysis, whereas that of C-9, 9', and 9″ was determined via the circular dichroism data of the [Rh 2 (OCOCF 3 ) 4 ] complex and DFT NMR calculations. Thalassosamide showed moderate in vivo efficacy against Pseudomonas aeruginosa.

  18. A New Species of Frog (Anura: Dicroglossidae) Discovered from the Mega City of Dhaka.

    PubMed

    Howlader, Mohammad Sajid Ali; Nair, Abhilash; Merilä, Juha

    2016-01-01

    We describe a new species of frog of the genus Zakerana discovered from the urban core of Dhaka, Bangladesh, one of the most densely populated cities in the world. Although the new species is morphologically similar to the geographically proximate congeners in the Bangladeshi cricket frog group, we show that it can be distinguished from all congeners on the basis of morphological characters, advertisement calls and variation in two mitochondrial DNA genes (12S rRNA and 16S rRNA). Apart from several diagnostic differences in body proportions, the new species differs from other Zakerana species in having a flattened snout (from ventral view) projecting over the lower jaw, and diagnostic trapezoid-shaped red markings on the vocal sac in males. Molecular genetic analyses show that the new species is highly divergent (3.1-20.1% sequence divergence) from all congeneric species, and forms a well-supported clade with its sister species, Zakerana asmati. The discovery of a new amphibian species from the urban core of Dhaka together with several recent descriptions of new amphibian species from Bangladesh may indicate that more amphibian species remain to be discovered from this country.

  19. A New Species of Frog (Anura: Dicroglossidae) Discovered from the Mega City of Dhaka

    PubMed Central

    Howlader, Mohammad Sajid Ali; Nair, Abhilash; Merilä, Juha

    2016-01-01

    We describe a new species of frog of the genus Zakerana discovered from the urban core of Dhaka, Bangladesh, one of the most densely populated cities in the world. Although the new species is morphologically similar to the geographically proximate congeners in the Bangladeshi cricket frog group, we show that it can be distinguished from all congeners on the basis of morphological characters, advertisement calls and variation in two mitochondrial DNA genes (12S rRNA and 16S rRNA). Apart from several diagnostic differences in body proportions, the new species differs from other Zakerana species in having a flattened snout (from ventral view) projecting over the lower jaw, and diagnostic trapezoid-shaped red markings on the vocal sac in males. Molecular genetic analyses show that the new species is highly divergent (3.1–20.1% sequence divergence) from all congeneric species, and forms a well-supported clade with its sister species, Zakerana asmati. The discovery of a new amphibian species from the urban core of Dhaka together with several recent descriptions of new amphibian species from Bangladesh may indicate that more amphibian species remain to be discovered from this country. PMID:26934699

  20. Discovering the Ancient Maya from Space

    NASA Technical Reports Server (NTRS)

    Sever, T. L.

    2008-01-01

    The Pet6n region of northern Guatemala contains some of the most significant Mayan archeological sites in Latin America. It was in this region that the Maya civilization began, flourished, and abruptly disappeared. Remote sensing technology is helping to locate and map ancient Maya sites that are threatened today by accelerating deforestation and looting. Thematic Mapper, IKONOS, and QuickBird satellite, and airborne STAR-3i and AIRSAR radar data, combined with Global Positioning System (GPS) technology, are successfully detecting ancient Maya features such as sites, roadways, canals, and water reservoirs. Satellite imagery is also being used to map the bajos, which are seasonally flooded swamps that cover over 40% of the land surface. Through the use of various airborne and satellite sensor systems we have been able to detect and map ancient causeways, temples, reservoirs, and land forms, and locate these features on the ground through GPS technology. Recently, we have discovered that there is a strong relationship between a tropical forest vegetation signature in satellite imagery and the location of archeological sites. We believe that the use of limestone and lime plasters in ancient Maya construction affects the moisture, nutrition, and plant species of the surface vegetation. We have mapped these vegetation signatures in the imagery and verified through field survey that they are indicative of archeological sites. Through the use of remote sensing and GIS technology it is possible to identify unrecorded archeological features in a dense tropical forest environment and monitor these cultural features for their protection.

  1. Discovering the Ancient Maya From Space

    NASA Technical Reports Server (NTRS)

    Sever, T. L.

    2007-01-01

    The Peten region of northern Guatemala contains some of the most significant Mayan archeological sites in Latin America. It was in this region that the Maya civilization began, flourished, and abruptly disappeared. Remote sensing technology is helping to locate and map ancient Maya sites that are threatened today by accelerating deforestation and looting. Thematic Mapper, IKONOS, and QuickBird satellite, and airborne STAR-3i and AIRSAR radar data, combined with Global Positioning System (GPS) technology, are successfully detecting ancient Maya features such as sites, roadways, canals, and water reservoirs. Satellite imagery is also being used to map the bajos, which are seasonally flooded swamps that cover over 40% of the land surface. Through the use of various airborne and satellite sensor systems we have been able to detect and map ancient causeways, temples, reservoirs, and land forms, and locate these features on the ground through GPS technology. Recently, we have discovered that there is a strong relationship between a tropical forest vegetation signature in satellite imagery and the location of archeological sites. We believe that the use o f limestone and lime plasters in ancient Maya construction affects the moisture, nutrition, and plant species of the surface vegetation. We have mapped these vegetation signatures in the imagery and verified through field survey that they are indicative of archeological sites. Through the use of remote sensing and GIS technology it is possible to identify unrecorded archeological features in a dense tropical forest environment and monitor these cultural features for their protection.

  2. New variable stars discovered in the fields of three Galactic open clusters using the VVV survey

    NASA Astrophysics Data System (ADS)

    Palma, T.; Minniti, D.; Dékány, I.; Clariá, J. J.; Alonso-García, J.; Gramajo, L. V.; Ramírez Alegría, S.; Bonatto, C.

    2016-11-01

    This project is a massive near-infrared (NIR) search for variable stars in highly reddened and obscured open cluster (OC) fields projected on regions of the Galactic bulge and disk. The search is performed using photometric NIR data in the J-, H- and Ks- bands obtained from the Vista Variables in the Vía Láctea (VVV) Survey. We performed in each cluster field a variability search using Stetson's variability statistics to select the variable candidates. Later, those candidates were subjected to a frequency analysis using the Generalized Lomb-Scargle and the Phase Dispersion Minimization algorithms. The number of independent observations range between 63 and 73. The newly discovered variables in this study, 157 in total in three different known OCs, are classified based on their light curve shapes, periods, amplitudes and their location in the corresponding color-magnitude (J -Ks ,Ks) and color-color (H -Ks , J - H) diagrams. We found 5 possible Cepheid stars which, based on the period-luminosity relation, are very likely type II Cepheids located behind the bulge. Among the newly discovered variables, there are eclipsing binaries, δ Scuti, as well as background RR Lyrae stars. Using the new version of the Wilson & Devinney code as well as the "Physics Of Eclipsing Binaries" (PHOEBE) code, we analyzed some of the best eclipsing binaries we discovered. Our results show that these studied systems turn out to be ranging from detached to double-contact binaries, with low eccentricities and high inclinations of approximately 80°. Their surface temperatures range between 3500 K and 8000 K.

  3. [Lysenkoism in Polish botany].

    PubMed

    Köhler, Piotr

    2008-01-01

    Lysenkoism by PAN came with the Sixth General Assembly of its members on June 11-12, 1956. The second tier of propagating Lysenkoism consisted in activities aimed at the general public, including the teaching of creative Darwinism (obligatory for pupils of various levels of education), in the school years 1949/50-1956/57. There were few botanists who published studies in Lysenkoism: only 55 persons did so. Among them, there were only a few botanists who could boast of significant previous scientific achievements--they included Stefan Białobok (1909-1992), Władysław Kunicki-Goldfinger (1916-1995), Edmund Malinowski (1885-1979), Konstanty Moldenhawer (1889-1962), Józef Motyka (1900-1984), Szczepan Pieniazek. A majority of the authors of publication in Lysenkoism were young scientists or people who did publish anything later on. Basing on the available bibliographies, it is possible to ascertain that there were ca. 140 Lysenkoist botanical publications (out of the total of 3410), i.e. 4.1% (fig. 1) of all the botanist publications in Poland in that period. Their number in the years 1949-1953 was higher than in the next period, and oscillated between 15 and 24 publications annually (fig. 2). The percentage of Lysenkoist studies among all publications in botany published each year was highest in 1949 (11.5%), and decreased systematically in the following years (fig. 3). Lysenkoism was a marginal phenomenon in Polish botany. Among the Lysenkoist publications, most summarized papers delivered at successive conferences, or consisted in reprints of Soviet studies. A significant group was made up of publications popularizing the principles and achievements of Lysenkoism (on the basis of Soviet publications). There were relatively studies presenting the results of research conducted in Poland on the basis of Lysenko's theory. Botanists who remember those times recollect that topics connected with Michurinian-Lysenkoist biology were avoided. It is symptomatic that not a single

  4. Classification of pasture habitats by Hungarian herders in a steppe landscape (Hungary)

    PubMed Central

    2012-01-01

    Background Landscape ethnoecology focuses on the ecological features of the landscape, how the landscape is perceived, and used by people who live in it. Though studying folk classifications of species has a long history, the comparative study of habitat classifications is just beginning. I studied the habitat classification of herders in a Hungarian steppe, and compared it to classifications of botanists and laymen. Methods For a quantitative analysis the picture sort method was used. Twenty-three pictures of 7-11 habitat types were sorted by 25 herders.’Density’ of pictures along the habitat gradient of the Hortobágy salt steppe was set as equal as possible, but pictures differed in their dominant species, wetness, season, etc. Before sorts, herders were asked to describe pictures to assure proper recognition of habitats. Results Herders classified the images into three main groups: (1) fertile habitats at the higher parts of the habitat gradient (partos, lit. on the shore); (2) saline habitats (szík, lit. salt or saline place), and (3) meadows and marshes (lapos, lit. flooded) at the lower end of the habitat gradient. Sharpness of delimitation changed along the gradient. Saline habitats were the most isolated from the rest. Botanists identified 6 groups. Laymen grouped habitats in a less coherent way. As opposed to my expectations, botanical classification was not more structured than that done by herders. I expected and found high correspondence between the classifications by herders, botanists and laymen. All tended to recognize similar main groups: wetlands, ”good grass” and dry/saline habitats. Two main factors could have been responsible for similar classifications: salient features correlated (e.g. salinity recognizable by herders and botanists but not by laymen correlated with the density of grasslands or height of vegetation recognizable also for laymen), or the same salient features were used as a basis for sorting (wetness, and abiotic stress

  5. A fluorescence anisotropy assay to discover and characterize ligands targeting the maytansine site of tubulin.

    PubMed

    Menchon, Grégory; Prota, Andrea E; Lucena-Agell, Daniel; Bucher, Pascal; Jansen, Rolf; Irschik, Herbert; Müller, Rolf; Paterson, Ian; Díaz, J Fernando; Altmann, Karl-Heinz; Steinmetz, Michel O

    2018-05-29

    Microtubule-targeting agents (MTAs) like taxol and vinblastine are among the most successful chemotherapeutic drugs against cancer. Here, we describe a fluorescence anisotropy-based assay that specifically probes for ligands targeting the recently discovered maytansine site of tubulin. Using this assay, we have determined the dissociation constants of known maytansine site ligands, including the pharmacologically active degradation product of the clinical antibody-drug conjugate trastuzumab emtansine. In addition, we discovered that the two natural products spongistatin-1 and disorazole Z with established cellular potency bind to the maytansine site on β-tubulin. The high-resolution crystal structures of spongistatin-1 and disorazole Z in complex with tubulin allowed the definition of an additional sub-site adjacent to the pocket shared by all maytansine-site ligands, which could be exploitable as a distinct, separate target site for small molecules. Our study provides a basis for the discovery and development of next-generation MTAs for the treatment of cancer.

  6. The Blood Exposome and Its Role in Discovering Causes of Disease

    PubMed Central

    Barupal, Dinesh K.; Wishart, David; Vineis, Paolo; Scalbert, Augustin

    2014-01-01

    Background: Since 2001, researchers have examined the human genome (G) mainly to discover causes of disease, despite evidence that G explains relatively little risk. We posit that unexplained disease risks are caused by the exposome (E; representing all exposures) and G × E interactions. Thus, etiologic research has been hampered by scientists’ continuing reliance on low-tech methods to characterize E compared with high-tech omics for characterizing G. Objectives: Because exposures are inherently chemical in nature and arise from both endogenous and exogenous sources, blood specimens can be used to characterize exposomes. To explore the “blood exposome” and its connection to disease, we sought human blood concentrations of many chemicals, along with their sources, evidence of chronic-disease risks, and numbers of metabolic pathways. Methods: From the literature we obtained human blood concentrations of 1,561 small molecules and metals derived from foods, drugs, pollutants, and endogenous processes. We mapped chemical similarities after weighting by blood concentrations, disease-risk citations, and numbers of human metabolic pathways. Results: Blood concentrations spanned 11 orders of magnitude and were indistinguishable for endogenous and food chemicals and drugs, whereas those of pollutants were 1,000 times lower. Chemical similarities mapped by disease risks were equally distributed by source categories, but those mapped by metabolic pathways were dominated by endogenous molecules and essential nutrients. Conclusions: For studies of disease etiology, the complexity of human exposures motivates characterization of the blood exposome, which includes all biologically active chemicals. Because most small molecules in blood are not human metabolites, investigations of causal pathways should expand beyond the endogenous metabolome. Citation: Rappaport SM, Barupal DK, Wishart D, Vineis P, Scalbert A. 2014. The blood exposome and its role in discovering causes of

  7. New energy levels of atomic niobium (Nb I) discovered by laser-spectroscopic investigations

    NASA Astrophysics Data System (ADS)

    Kröger, S.; Windholz, L.; Başar, Gü.; Başar, Gö.

    2018-06-01

    We report the discovery of 9 previously unknown energy levels of the atomic niobium, all having even parity. Two levels have energies below 19,500 cm-1 and angular momentum J = 3/2, while the energies of the others are located between 39,700 and 43,420 cm-1. The levels were discovered by laser excitation of several unclassified spectral lines in the wavelength range between 554 nm and 650 nm and detection of laser-induced fluorescence with a monochromator.

  8. Discover Space: an IYA program for libraries

    NASA Astrophysics Data System (ADS)

    Dusenbery, P.

    2009-12-01

    Across the country, there is a growing concern regarding the number of students entering science and technology careers. While the focus for education reform is on school improvement, there is considerable research that supports the role that out-of-school experiences can play in student achievement. This is particularly true when family interactions are factored in. Libraries provide an untapped resource for engaging underserved youth and their families in fostering an appreciation and deeper understanding of science and technology topics. The nation’s more than 17,000 public libraries attract diverse audiences in almost every community. Science exhibits in libraries could potentially reach many adults and upper elementary and middle school students with STEM content. The Space Science Institute (SSI) is partnering with the American Library Association (ALA) to develop a pilot exhibit called Discover Space. The exhibit includes two areas: Space Storms and Star Quest and is currently on tour in Colorado. It is a featured IYA outreach project from SSI. This presentation will focus on the results of a national survey of libraries that SSI and ALA conducted in 2008 about interest in STEM exhibits as well as the development process that was used to design and fabricate the exhibit. Preliminary evaluation results will also be shared. The presentation will conclude with an examination of how this program could benefit underserved communities around the country.

  9. Oxygen and carbon discovered in exoplanet atmosphere `blow-off'

    NASA Astrophysics Data System (ADS)

    2004-02-01

    Oxygen and carbon discovered in exoplanet atmosphere ‘blow-off’ hi-res Size hi-res: 1096 kb Credits: ESA/Alfred Vidal-Madjar (Institut d’Astrophysique de Paris, CNRS, France) Oxygen and carbon discovered in exoplanet atmosphere ‘blow-off’ This artist’s impression shows an extended ellipsoidal envelope - the shape of a rugby-ball - of oxygen and carbon discovered around the well-known extrasolar planet HD 209458b. An international team of astronomers led by Alfred Vidal-Madjar (Institut d’Astrophysique de Paris, CNRS, France) observed the first signs of oxygen and carbon in the atmosphere of a planet beyond our Solar System for the first time using the NASA/ESA Hubble Space Telescope. The atoms of carbon and oxygen are swept up from the lower atmosphere with the flow of escaping atmospheric atomic hydrogen - like dust in a supersonic whirlwind - in a process called atmospheric ‘blow off’. Oxygen and carbon have been detected in the atmosphere of a planet beyond our Solar System for the first time. Scientists using the NASA/ESA Hubble Space Telescope have observed the famous extrasolar planet HD 209458b passing in front of its parent star, and found oxygen and carbon surrounding the planet in an extended ellipsoidal envelope - the shape of a rugby-ball. These atoms are swept up from the lower atmosphere with the flow of the escaping atmospheric atomic hydrogen, like dust in a supersonic whirlwind. The team led by Alfred Vidal-Madjar (Institut d’Astrophysique de Paris, CNRS, France) reports this discovery in a forthcoming issue of Astrophysical Journal Letters. The planet, called HD 209458b, may sound familiar. It is already an extrasolar planet with an astounding list of firsts: the first extrasolar planet discovered transiting its sun, the first with an atmosphere, the first observed to have an evaporating hydrogen atmosphere (in 2003 by the same team of scientists) and now the first to have an atmosphere containing oxygen and carbon. Furthermore

  10. Adventures with Doug: An Interview with Dot Wade, Prairie Botanist.

    ERIC Educational Resources Information Center

    Wiener, Morris; Wade, Dot

    1995-01-01

    The wife of the late Doug Wade discusses the course of his career in outdoor education and nature interpretation; the relationship he had with his mentor, Aldo Leopold; his success as a teacher and his relationship with his students; and how a background in botany enabled her to assist her husband with field trips. (LP)

  11. Discovering and annotating fish early life-stage (FELS) adverse outcome pathways: Putting the research strategy into practice

    EPA Science Inventory

    In May 2012, a HESI-sponsored expert workshop yielded a proposed research strategy for systematically discovering, characterizing, and annotating fish early life-stage (FELS) adverse outcome pathways (AOPs) as well as prioritizing AOP development in light of current restrictions ...

  12. ROSAT Discovers Unique, Distant Cluster of Galaxies

    NASA Astrophysics Data System (ADS)

    1995-06-01

    Brightest X-ray Cluster Acts as Strong Gravitational Lens Based on exciting new data obtained with the ROSAT X-ray satellite and a ground-based telescope at the ESO La Silla Observatory, a team of European astronomers [2] has just discovered a very distant cluster of galaxies with unique properties. It emits the strongest X-ray emission of any cluster ever observed by ROSAT and is accompanied by two extraordinarily luminous arcs that represent the gravitationally deflected images of even more distant objects. The combination of these unusual characteristics makes this cluster, now known as RXJ1347.5-1145, a most interesting object for further cosmological studies. DISCOVERY AND FOLLOW-UP OBSERVATIONS This strange cluster of galaxies was discovered during the All Sky Survey with the ROSAT X-ray satellite as a moderately intense X-ray source in the constellation of Virgo. It could not be identified with any already known object and additional ground-based observations were therefore soon after performed with the Max-Planck-Society/ESO 2.2-metre telescope at the La Silla observatory in Chile. These observations took place within a large--scale redshift survey of X-ray clusters of galaxies detected by the ROSAT All Sky Survey, a so-called ``ESO Key Programme'' led by astronomers from the Max-Planck-Institut fur Extraterrestrische Physik and the Osservatorio Astronomico di Brera. The main aim of this programme is to identify cluster X-ray sources, to determine the distance to the X-ray emitting clusters and to investigate their overall properties. These observations permitted to measure the redshift of the RXJ1347.5-1145 cluster as z = 0.45, i.e. it moves away from us with a velocity (about 106,000 km/sec) equal to about one-third of the velocity of light. This is an effect of the general expansion of the universe and it allows to determine the distance as about 5,000 million light-years (assuming a Hubble constant of 75 km/sec/Mpc). In other words, we see these

  13. Arsenic-Containing Phosphatidylcholines: A New Group of Arsenolipids Discovered in Herring Caviar.

    PubMed

    Viczek, Sandra A; Jensen, Kenneth B; Francesconi, Kevin A

    2016-04-18

    A new group of arsenolipids based on cell-membrane phosphatidylcholines has been discovered in herring caviar (fish roe). A combination of HPLC with elemental and molecular mass spectrometry was used to identify five arsenic-containing phosphatidylcholines; the same technique applied to salmon caviar identified an arsenic-containing phosphatidylethanolamine. The arsenic group in these membrane lipids might impart particular properties to the molecules not displayed by their non-arsenic analogues. Additionally, the new compounds have human health implications according to recent results showing high cytotoxicity for some arsenolipids. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  14. Drug Targets in Infections With Ebola and Marburg Viruses

    DTIC Science & Technology

    2009-01-01

    Kew, M. C.; Bothwell, T . H.; Sher, R .; Miller, G. B.; Schneider, 1; Koomhof, H. 1; Gomperts, E. D.; Isaacson, M.; Gear, J. H. Br. Med. J., 1975,4(5995...489-93. [12] Smith, D, H.; Johnson, B. K.; Isaacson, M.; Swanapoel, R .; Johnson. K. M.; Killey, M.; Bagshawe, A; Siongok, T .; Keruga, W. K. Lancet...August 2007. Wkly Epidemiol Rec, 2007, 82(43) 381-4. (16] Towner, 1 S.; Khristova, M. L.; Sealy, T K.; Vincent, M. J.; Erickson, B. R .; Bawiec, D. A

  15. Statistical research on the bioactivity of new marine natural products discovered during the 28 years from 1985 to 2012.

    PubMed

    Hu, Yiwen; Chen, Jiahui; Hu, Guping; Yu, Jianchen; Zhu, Xun; Lin, Yongcheng; Chen, Shengping; Yuan, Jie

    2015-01-07

    Every year, hundreds of new compounds are discovered from the metabolites of marine organisms. Finding new and useful compounds is one of the crucial drivers for this field of research. Here we describe the statistics of bioactive compounds discovered from marine organisms from 1985 to 2012. This work is based on our database, which contains information on more than 15,000 chemical substances including 4196 bioactive marine natural products. We performed a comprehensive statistical analysis to understand the characteristics of the novel bioactive compounds and detail temporal trends, chemical structures, species distribution, and research progress. We hope this meta-analysis will provide useful information for research into the bioactivity of marine natural products and drug development.

  16. Statistical Research on the Bioactivity of New Marine Natural Products Discovered during the 28 Years from 1985 to 2012

    PubMed Central

    Hu, Yiwen; Chen, Jiahui; Hu, Guping; Yu, Jianchen; Zhu, Xun; Lin, Yongcheng; Chen, Shengping; Yuan, Jie

    2015-01-01

    Every year, hundreds of new compounds are discovered from the metabolites of marine organisms. Finding new and useful compounds is one of the crucial drivers for this field of research. Here we describe the statistics of bioactive compounds discovered from marine organisms from 1985 to 2012. This work is based on our database, which contains information on more than 15,000 chemical substances including 4196 bioactive marine natural products. We performed a comprehensive statistical analysis to understand the characteristics of the novel bioactive compounds and detail temporal trends, chemical structures, species distribution, and research progress. We hope this meta-analysis will provide useful information for research into the bioactivity of marine natural products and drug development. PMID:25574736

  17. Discovering DISCOVER

    DTIC Science & Technology

    1997-10-01

    used to establish associations between source code and Adobe FrameMaker documents. The associations are represented as links that facilitate...possible (such as that provided with FrameMaker ). There is no scripting interface that would enable end-user programming of its modules. The suite of

  18. High-School Student Discovers Strange Astronomical Object

    NASA Astrophysics Data System (ADS)

    2009-09-01

    A West Virginia high-school student analyzing data from a giant radio telescope has discovered a new astronomical object -- a strange type of neutron star called a rotating radio transient. Lucas Bolyard, a sophomore at South Harrison High School in Clarksburg, WV, made the discovery while participating in a project in which students are trained to scrutinize data from the National Science Foundation's giant Robert C. Byrd Green The project, called the Pulsar Search Collaboratory (PSC), is a joint project of the National Radio Astronomy Observatory (NRAO) and West Virginia University (WVU), funded by a grant from the National Science Foundation. Bolyard made the discovery in March, after he already had studied more than 2,000 data plots from the GBT and found nothing. "I was home on a weekend and had nothing to do, so I decided to look at some more plots from the GBT," he said. "I saw a plot with a pulse, but there was a lot of radio interference, too. The pulse almost got dismissed as interference," he added. Nonetheless, he reported it, and it went on a list of candidates for West Virginia University astronomers Maura McLaughlin and Duncan Lorimer to re-examine, scheduling new observations of the region of sky from which the pulse came. Disappointingly, the follow-up observations showed nothing, indicating that the object was not a normal pulsar. However, the astronomers explained to Bolyard that his pulse still might have come from a rotating radio transient. Confirmation didn't come until July. Bolyard was at the NRAO's Green Bank Observatory with fellow PSC students. The night before, the group had been observing with the GBT in the wee hours, and all were very tired. Then Lorimer showed Bolyard a new plot of his pulse, reprocessed from raw data, indicating that it is real, not interference, and that Bolyard is likely the discoverer of one of only about 30 rotating radio transients known. Suddenly, Bolyard said, he wasn't tired anymore. "That news made me full

  19. Discovering Related Clinical Concepts Using Large Amounts of Clinical Notes

    PubMed Central

    Ganesan, Kavita; Lloyd, Shane; Sarkar, Vikren

    2016-01-01

    The ability to find highly related clinical concepts is essential for many applications such as for hypothesis generation, query expansion for medical literature search, search results filtering, ICD-10 code filtering and many other applications. While manually constructed medical terminologies such as SNOMED CT can surface certain related concepts, these terminologies are inadequate as they depend on expertise of several subject matter experts making the terminology curation process open to geographic and language bias. In addition, these terminologies also provide no quantifiable evidence on how related the concepts are. In this work, we explore an unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes. Our evaluation shows that we are able to use a data driven approach to discovering highly related concepts for various search terms including medications, symptoms and diseases. PMID:27656096

  20. Effects of the Teacher's Background on Teaching and Students' Achievement in Botany and Zoology

    ERIC Educational Resources Information Center

    Tamir, P.

    1976-01-01

    The relationship of certain teacher background variables to their attitudes priorities, expectations, and instructional practices regarding botany and zoology was investigated. Teachers were grouped into three categories: botanists, zoologists, and neutrals; the academic achievement of the students of the teachers in the three categories was…

  1. Discovering the African freshwater "torpedo": legendary Ethiopia, religious controversies, and a catfish capable of reanimating dead fish.

    PubMed

    Piccolino, Marco; Finger, Stanley; Barbara, Jean-Gaël

    2011-07-01

    The electric catfishes of African rivers and lakes, once depicted on Egyptian tomb art, have been largely overlooked in histories and reviews of electric fish biology and animal electricity. This article examines how Westerners, especially Dominican and Jesuit missionaries, discovered them in Ethiopia and other parts of Africa at the beginning of the seventeenth century. What transpired took place against the backdrop of tales involving the Bible, Prester John's mythical empire, and imaginary animals with fabulous powers. In effect, how they were found is related to attempts to convert Ethiopian Christians to true Catholicism, hopes of discovering great riches, and opportunities to trade, and not with the efforts of skilled natural philosophers to document and conduct experiments on the wildlife of this continent. Nevertheless, the early descriptions by Europeans circulated, and during the next century these catfishes began to be used in experiments that helped to make animal electricity a reality.

  2. Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.

    PubMed

    Capurso, Daniel; Bengtsson, Henrik; Segal, Mark R

    2016-03-18

    The spatial organization of the genome influences cellular function, notably gene regulation. Recent studies have assessed the three-dimensional (3D) co-localization of functional annotations (e.g. centromeres, long terminal repeats) using 3D genome reconstructions from Hi-C (genome-wide chromosome conformation capture) data; however, corresponding assessments for continuous functional genomic data (e.g. chromatin immunoprecipitation-sequencing (ChIP-seq) peak height) are lacking. Here, we demonstrate that applying bump hunting via the patient rule induction method (PRIM) to ChIP-seq data superposed on a Saccharomyces cerevisiae 3D genome reconstruction can discover 'functional 3D hotspots', regions in 3-space for which the mean ChIP-seq peak height is significantly elevated. For the transcription factor Swi6, the top hotspot by P-value contains MSB2 and ERG11 - known Swi6 target genes on different chromosomes. We verify this finding in a number of ways. First, this top hotspot is relatively stable under PRIM across parameter settings. Second, this hotspot is among the top hotspots by mean outcome identified by an alternative algorithm, k-Nearest Neighbor (k-NN) regression. Third, the distance between MSB2 and ERG11 is smaller than expected (by resampling) in two other 3D reconstructions generated via different normalization and reconstruction algorithms. This analytic approach can discover functional 3D hotspots and potentially reveal novel regulatory interactions. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  3. Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions

    PubMed Central

    Capurso, Daniel; Bengtsson, Henrik; Segal, Mark R.

    2016-01-01

    The spatial organization of the genome influences cellular function, notably gene regulation. Recent studies have assessed the three-dimensional (3D) co-localization of functional annotations (e.g. centromeres, long terminal repeats) using 3D genome reconstructions from Hi-C (genome-wide chromosome conformation capture) data; however, corresponding assessments for continuous functional genomic data (e.g. chromatin immunoprecipitation-sequencing (ChIP-seq) peak height) are lacking. Here, we demonstrate that applying bump hunting via the patient rule induction method (PRIM) to ChIP-seq data superposed on a Saccharomyces cerevisiae 3D genome reconstruction can discover ‘functional 3D hotspots’, regions in 3-space for which the mean ChIP-seq peak height is significantly elevated. For the transcription factor Swi6, the top hotspot by P-value contains MSB2 and ERG11 – known Swi6 target genes on different chromosomes. We verify this finding in a number of ways. First, this top hotspot is relatively stable under PRIM across parameter settings. Second, this hotspot is among the top hotspots by mean outcome identified by an alternative algorithm, k-Nearest Neighbor (k-NN) regression. Third, the distance between MSB2 and ERG11 is smaller than expected (by resampling) in two other 3D reconstructions generated via different normalization and reconstruction algorithms. This analytic approach can discover functional 3D hotspots and potentially reveal novel regulatory interactions. PMID:26869583

  4. High Throughput Techniques for Discovering New Glycine Receptor Modulators and their Binding Sites

    PubMed Central

    Gilbert, Daniel F.; Islam, Robiul; Lynagh, Timothy; Lynch, Joseph W.; Webb, Timothy I.

    2009-01-01

    The inhibitory glycine receptor (GlyR) is a member of the Cys-loop receptor family that mediates inhibitory neurotransmission in the central nervous system. These receptors are emerging as potential drug targets for inflammatory pain, immunomodulation, spasticity and epilepsy. Antagonists that specifically inhibit particular GlyR isoforms are also required as pharmacological probes for elucidating the roles of particular GlyR isoforms in health and disease. Although a substantial number of both positive and negative GlyR modulators have been identified, very few of these are specific for the GlyR over other receptor types. Thus, the potential of known compounds as either therapeutic leads or pharmacological probes is limited. It is therefore surprising that there have been few published studies describing attempts to discover novel GlyR isoform-specific modulators. The first aim of this review is to consider various methods for efficiently screening compounds against these receptors. We conclude that an anion sensitive yellow fluorescent protein is optimal for primary screening and that automated electrophysiology of cells stably expressing GlyRs is useful for confirming hits and quantitating the actions of identified compounds. The second aim of this review is to demonstrate how these techniques are used in our laboratory for the purpose of both discovering novel GlyR-active compounds and characterizing their binding sites. We also describe a reliable, cost effective method for transfecting HEK293 cells in single wells of a 384-well plate using nanogram quantities of plasmid DNA. PMID:19949449

  5. Economic botany collections: A source of material evidence for exploring historical changes in Chinese medicinal materials.

    PubMed

    Brand, Eric; Leon, Christine; Nesbitt, Mark; Guo, Ping; Huang, Ran; Chen, Hubiao; Liang, Li; Zhao, Zhongzhen

    2017-03-22

    Many Chinese medicinal materials (CMMs) have changed over centuries of use, particularly in terms of their botanical identity and processing methods. In some cases, these changes have important implications for safety and efficacy in modern clinical practice. As most previous research has focused on clarifying the evolution of CMMs by analyzing traditional Chinese materia medica ("bencao") literature, assessments of historical collections are needed to validate these conclusions with material evidence. Historical collections of Chinese medicines reveal the market materials in circulation at a given moment in time, and represent an underexploited resource for analyzing the evolution of Chinese herbal medicines. This study compares specimens from a rare collection of CMMs from the 1920s with contemporary market materials; by highlighting examples of changes in botanical identity and processing that remain relevant for safe clinical practice in the modern era, this work aims to stimulate further research into previously unexplored historical collections of Chinese medicines. 620 specimens of CMMs that were collected from Chinese pharmacies in the Malay peninsula in the 1920s were examined macroscopically and compared with current pharmacopoeia specifications and authentic contemporary samples. These historical specimens, which are stored in the UK in the Economic Botany Collections (EBC) of Royal Botanic Gardens Kew, were morphologically examined, photographed, and compared to authentic CMMs stored at the Bank of China (Hong Kong) Chinese Medicines Center at Hong Kong Baptist University, as well as authentic herbarium-vouchered specimens from the Leon Collection (LC) at the Kew EBC. Case studies were selected to illustrate examples of historical changes in botanical identity, used plant parts, and processing methods. This investigation confirmed that confusion due to shared common names and regional variations in the botanical identity of certain CMMs has been a

  6. 78 FR 64436 - Disposition of Unclaimed Human Remains and Other Cultural Items Discovered on Federal Lands After...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-29

    ..., funerary objects, sacred objects, or objects of cultural patrimony discovered on Federal lands after..., funerary objects, sacred objects, or objects of cultural patrimony (``cultural items'' under NAGPRA) not... responsibility to care for human remains, funerary objects, sacred objects, or objects of cultural patrimony, the...

  7. Multi-perspective observations of NO2 over the Denver area during DISCOVER-AQ: Insights for future monitoring

    EPA Science Inventory

    The final deployment in the DISCOVER-AQ1 series of air quality field campaigns focused on the Northern Front Range of Colorado including the Denver Metropolitan Area in July-August 2014. The overarching goal of these campaigns was to improve the interpretation of satellite observ...

  8. Research &Discover: A Pipeline of the Next Generation of Earth System Scientists

    NASA Astrophysics Data System (ADS)

    Hurtt, G. C.; Einaudi, F.; Moore, B.; Salomonson, V.; Campbell, J.

    2006-12-01

    In 2002, the University of New Hampshire (UNH) and NASA Goddard Space Flight Center (GSFC) started the educational initiative Research &Discover with the goals to: (i) recruit outstanding young scientists into research careers in Earth science and Earth remote sensing (broadly defined), and (ii) support Earth science graduate students enrolled at UNH through a program of collaborative partnerships with GSFC scientists and UNH faculty. To meet these goals, the program consists of a linked set of educational opportunities that begins with a paid summer research internship at UNH for students following their Junior year of college, and is followed by a second paid summer internship at GSFC for students following their Senior year of college. These summer internships are then followed by two-year fellowship opportunities at UNH for graduate studies jointly supervised by UNH faculty and GSFC scientists. After 5 years of implementation, the program has awarded summer research internships to 22 students, and graduate research fellowships to 6 students. These students have produced more than 78 scientific research presentations, 5 undergraduate theses, 2 Masters theses, and 4 peer-reviewed publications. More than 80% of alums are actively pursuing careers in Earth sciences now. In the process, the program has engaged 19 faculty from UNH and 15 scientists from GSFC as advisors/mentors. New collaborations between these scientists have resulted in new joint research proposals, and the development, delivery, and assessment of a new course in Earth System Science at UNH. Research &Discover represents an educational model of collaboration between a national lab and university to create a pipeline of the next generation of Earth system scientists.

  9. Microanalytical study of some cosmic dust discovered in sea-floor sediments in China

    NASA Technical Reports Server (NTRS)

    Shijie, Z.; Hanchang, P.; Zhong, Y.

    1984-01-01

    The study of cosmic dust can provide useful data in the investigation of the origin of the Earth and the evolution of celestial bodies. Three types of cosmic dust (ferriginous, siliceous, and glassy) were discovered in the seafloor sediments near China. Their chemical composition and microstructure were examined by X-ray diffraction, fractography, and electron microscopy. The major mineral in an iron-containing cosmic dust is magnetite. The silicate spheres contain sundry metals and metal oxides. Glassy microtektites are similar in composition to tektites, and are found in all the major meteorite areas worldwide.

  10. Swarm intelligence in bioinformatics: methods and implementations for discovering patterns of multiple sequences.

    PubMed

    Cui, Zhihua; Zhang, Yi

    2014-02-01

    As a promising and innovative research field, bioinformatics has attracted increasing attention recently. Beneath the enormous number of open problems in this field, one fundamental issue is about the accurate and efficient computational methodology that can deal with tremendous amounts of data. In this paper, we survey some applications of swarm intelligence to discover patterns of multiple sequences. To provide a deep insight, ant colony optimization, particle swarm optimization, artificial bee colony and artificial fish swarm algorithm are selected, and their applications to multiple sequence alignment and motif detecting problem are discussed.

  11. Gigantic Wave Discovered in Perseus Galaxy Cluster

    NASA Image and Video Library

    2017-12-08

    Combining data from NASA's Chandra X-ray Observatory with radio observations and computer simulations, an international team of scientists has discovered a vast wave of hot gas in the nearby Perseus galaxy cluster. Spanning some 200,000 light-years, the wave is about twice the size of our own Milky Way galaxy. The researchers say the wave formed billions of years ago, after a small galaxy cluster grazed Perseus and caused its vast supply of gas to slosh around an enormous volume of space. "Perseus is one of the most massive nearby clusters and the brightest one in X-rays, so Chandra data provide us with unparalleled detail," said lead scientist Stephen Walker at NASA's Goddard Space Flight Center in Greenbelt, Maryland. "The wave we've identified is associated with the flyby of a smaller cluster, which shows that the merger activity that produced these giant structures is still ongoing." Read more at nasa.gov Credit: NASA's Goddard Space Flight Center/Stephen Walker href="http://www.nasa.gov/audience/formedia/features/MP_Photo_Guidelines.html" rel="nofollow">NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  12. Exploring the extremely low surface brightness sky: distances to 23 newly discovered objects in Dragonfly fields

    NASA Astrophysics Data System (ADS)

    van Dokkum, Pieter

    2016-10-01

    We are obtaining deep, wide field images of nearby galaxies with the Dragonfly Telephoto Array. This telescope is optimized for low surface brightness imaging, and we are finding many low surface brightness objects in the Dragonfly fields. In Cycle 22 we obtained ACS imaging for 7 galaxies that we had discovered in a Dragonfly image of the galaxy M101. Unexpectedly, the ACS data show that only 3 of the galaxies are members of the M101 group, and the other 4 are very large Ultra Diffuse Galaxies (UDGs) at much greater distance. Building on our Cycle 22 program, here we request ACS imaging for 23 newly discovered low surface brightness objects in four Dragonfly fields centered on the galaxies NGC 1052, NGC 1084, NGC 3384, and NGC 4258. The immediate goals are to construct the satellite luminosity functions in these four fields and to constrain the number density of UDGs that are not in rich clusters. More generally, this complete sample of extremely low surface brightness objects provides the first systematic insight into galaxies whose brightness peaks at >25 mag/arcsec^2.

  13. Observations of candidate oscillating eclipsing binaries and two newly discovered pulsating variables

    NASA Astrophysics Data System (ADS)

    Liakos, A.; Niarchos, P.

    2009-03-01

    CCD observations of 24 eclipsing binary systems with spectral types ranging between A0-F0, candidate for containing pulsating components, were obtained. Appropriate exposure times in one or more photometric filters were used so that short-periodic pulsations could be detected. Their light curves were analyzed using the Period04 software in order to search for pulsational behaviour. Two new variable stars, namely GSC 2673-1583 and GSC 3641-0359, were discov- ered as by-product during the observations of eclipsing variables. The Fourier analysis of the observations of each star, the dominant pulsation frequencies and the derived frequency spectra are also presented.

  14. GK Dra: a delta Scuti Star in a New Eclipsing System Discovered by Hipparcos

    NASA Astrophysics Data System (ADS)

    Dallaporta, Sergio; Tomov, Toma; Zwitter, Tomaz; Munari, Ulisse

    2002-09-01

    GK Dra has been discovered by the Hipparcos mission as a 17 days eclipsing binary. We present here the first ground-based study of this star, based on extensive BV photoelectric photometry. We found a period of 9.974 days, equal depth primary and secondary eclipse (m=0.35 mag), no color variation in eclipse, and one of the components being a Sct star with an amplitude of 0.04 mag and a period of about 2.7 hours.

  15. Lightest exoplanet yet discovered

    NASA Astrophysics Data System (ADS)

    2009-04-01

    Well-known exoplanet researcher Michel Mayor today announced the discovery of the lightest exoplanet found so far. The planet, "e", in the famous system Gliese 581, is only about twice the mass of our Earth. The team also refined the orbit of the planet Gliese 581 d, first discovered in 2007, placing it well within the habitable zone, where liquid water oceans could exist. These amazing discoveries are the outcome of more than four years of observations using the most successful low-mass-exoplanet hunter in the world, the HARPS spectrograph attached to the 3.6-metre ESO telescope at La Silla, Chile. ESO PR Photo 15a/09 Artist's impression of Gliese 581 e ESO PR Photo 15b/09 A planet in the habitable zone ESO PR Video 15a/09 ESOcast 6 ESO PR Video 15b/09 VNR A-roll ESO PR Video 15c/09 Zoom-in on Gliese 581 e ESO PR Video 15d/09 Artist's impression of Gliese 581 e ESO PR Video 15e/09 Artist's impression of Gliese 581 d ESO PR Video 15f/09 Artist's impression of Gliese 581 system ESO PR Video 15g/09 The radial velocity method ESO PR Video 15h/09 Statement in English ESO PR Video 15i/09 Statement in French ESO PR Video 15j/09 La Silla Observatory "The holy grail of current exoplanet research is the detection of a rocky, Earth-like planet in the ‘habitable zone' -- a region around the host star with the right conditions for water to be liquid on a planet's surface", says Michel Mayor from the Geneva Observatory, who led the European team to this stunning breakthrough. Planet Gliese 581 e orbits its host star - located only 20.5 light-years away in the constellation Libra ("the Scales") -- in just 3.15 days. "With only 1.9 Earth-masses, it is the least massive exoplanet ever detected and is, very likely, a rocky planet", says co-author Xavier Bonfils from Grenoble Observatory. Being so close to its host star, the planet is not in the habitable zone. But another planet in this system appears to be. From previous observations -- also obtained with the HARPS spectrograph

  16. Discovering: Students' meanings for research

    NASA Astrophysics Data System (ADS)

    Rymer, John Ewan

    The call for science education reforms in the mid-1980s resulted in the implementation of a new Alberta senior high school science curriculum in 1992. The reformed curriculum reflected the call for increased authentic practice in the sciences. Part of my interpretation of this curriculum included a month long field biology research project. The students' scientific understandings while involved in this project have been a source of wonder and curiosity for me. As teacher researcher, I sought to interpret the meanings students held for scientific research as they progressed through their self-directed investigations. In an urban high school two of my Biology 20 classes comprised of a total of fifty-four students were involved in this study. Using data collected from student questionnaire responses, student field notebooks and recorded conversations my interpretations were developed. Based on these interpretations it appeared that students' understandings of research altered slightly through the course of the field project. Initially, I interpreted students' meanings for scientific research to include the notion that an independent external world exists which may be methodologically studied. Research was both purposeful and personal, seeking to discover new knowledge through the use of advanced technologies. Over the course of the biology project the students' meanings came to include the sense that research involved dealing with the uncertainty of novelty. Research became dynamic in nature and was seen to be never ending. It became apparent from students' conversations with me that students were aware school social structures and responded to the research project through their understanding of these structures. The potential benefits desired in the reformers' call for authentic scientific practice may have been subverted to a degree by the students' acceptance of school social structures and their underlying discourse. As a result, the implementation of authentic

  17. Data Recommender: An Alternative Way to Discover Open Scientific Datasets

    NASA Astrophysics Data System (ADS)

    Klump, J. F.; Devaraju, A.; Williams, G.; Hogan, D.; Davy, R.; Page, J.; Singh, D.; Peterson, N.

    2017-12-01

    Over the past few years, institutions and government agencies have adopted policies to openly release their data, which has resulted in huge amounts of open data becoming available on the web. When trying to discover the data, users face two challenges: an overload of choice and the limitations of the existing data search tools. On the one hand, there are too many datasets to choose from, and therefore, users need to spend considerable effort to find the datasets most relevant to their research. On the other hand, data portals commonly offer keyword and faceted search, which depend fully on the user queries to search and rank relevant datasets. Consequently, keyword and faceted search may return loosely related or irrelevant results, although the results may contain the same query. They may also return highly specific results that depend more on how well metadata was authored. They do not account well for variance in metadata due to variance in author styles and preferences. The top-ranked results may also come from the same data collection, and users are unlikely to discover new and interesting datasets. These search modes mainly suits users who can express their information needs in terms of the structure and terminology of the data portals, but may pose a challenge otherwise. The above challenges reflect that we need a solution that delivers the most relevant (i.e., similar and serendipitous) datasets to users, beyond the existing search functionalities on the portals. A recommender system is an information filtering system that presents users with relevant and interesting contents based on users' context and preferences. Delivering data recommendations to users can make data discovery easier, and as a result may enhance user engagement with the portal. We developed a hybrid data recommendation approach for the CSIRO Data Access Portal. The approach leverages existing recommendation techniques (e.g., content-based filtering and item co-occurrence) to produce

  18. Discovering Psychological Principles by Mining Naturally Occurring Data Sets.

    PubMed

    Goldstone, Robert L; Lupyan, Gary

    2016-07-01

    The very expertise with which psychologists wield their tools for achieving laboratory control may have had the unwelcome effect of blinding psychologists to the possibilities of discovering principles of behavior without conducting experiments. When creatively interrogated, a diverse range of large, real-world data sets provides powerful diagnostic tools for revealing principles of human judgment, perception, categorization, decision-making, language use, inference, problem solving, and representation. Examples of these data sets include patterns of website links, dictionaries, logs of group interactions, collections of images and image tags, text corpora, history of financial transactions, trends in twitter tag usage and propagation, patents, consumer product sales, performance in high-stakes sporting events, dialect maps, and scientific citations. The goal of this issue is to present some exemplary case studies of mining naturally existing data sets to reveal important principles and phenomena in cognitive science, and to discuss some of the underlying issues involved with conducting traditional experiments, analyses of naturally occurring data, computational modeling, and the synthesis of all three methods. Copyright © 2016 Cognitive Science Society, Inc.

  19. How did Archimedes discover the law of buoyancy by experiment?

    NASA Astrophysics Data System (ADS)

    Kuroki, Hidetaka

    2016-03-01

    After Archimedes and Vitruvius era, for more than 2000 years, it has been believed that the displaced water measurement of golden crown is impossible, and at his Eureka moment, Archimedes discovered the law of buoyancy (Proposition 7 of his principles) and proved the theft of a goldsmith by weighing the golden crown in water. A previous study showed that a small amount of displaced water was able to be measured with enough accuracy by the introduced method. Archimedes measured the weight of displaced water. He did not find the law of buoyancy but rather specific gravity of things at the moment. After which, Archimedes continued to measure the specific gravity of various solids and fluids. Through these measurements, he reached the discovery of the law of buoyancy directly by experiment. In this paper, the process to the discovery of Archimedes' principle (Proposition 5) is presented.

  20. Discovering EEG resting state alterations of semantic dementia.

    PubMed

    Grieder, Matthias; Koenig, Thomas; Kinoshita, Toshihiko; Utsunomiya, Keita; Wahlund, Lars-Olof; Dierks, Thomas; Nishida, Keiichiro

    2016-05-01

    Diagnosis of semantic dementia relies on cost-intensive MRI or PET, although resting EEG markers of other dementias have been reported. Yet the view still holds that resting EEG in patients with semantic dementia is normal. However, studies using increasingly sophisticated EEG analysis methods have demonstrated that slightest alterations of functional brain states can be detected. We analyzed the common four resting EEG microstates (A, B, C, and D) of 8 patients with semantic dementia in comparison with 8 healthy controls and 8 patients with Alzheimer's disease. Topographical differences between the groups were found in microstate classes B and C, while microstate classes A and D were comparable. The data showed that the semantic dementia group had a peculiar microstate E, but the commonly found microstate C was lacking. Furthermore, the presence of microstate E was significantly correlated with lower MMSE and language scores. Alterations in resting EEG can be found in semantic dementia. Topographical shifts in microstate C might be related to semantic memory deficits. This is the first study that discovered resting state EEG abnormality in semantic dementia. The notion that resting EEG in this dementia subtype is normal has to be revised. Copyright © 2016 International Federation of Clinical Neurophysiology. Published by Elsevier Ireland Ltd. All rights reserved.

  1. An historical note on the cell theory.

    PubMed

    Ribatti, Domenico

    2018-03-01

    The development of the microscope was a precondition for the discovery of cells. This instrument magnifies objects too small to be seen by the naked eye. In 1673, the Dutch botanist, Anton van Leeuwenhoek, made a more advanced microscope and reported seeing a myriad of microscopic "animalcules" in water. He also made further studies of red blood cells and sperm cells. Most studies that followed were done on the easily studied plant tissues. Plant cells, rigidly encased in their cell walls, were ideal to study in situ. The cell theory proposes that nucleated cells are the basic structure of plants and animals. This concept was observed and published separately, first by the botanist, Matthias Schleiden, in 1838, and then by the zoologist, Theodor Schwann, in 1839. Their work demonstrated that cells form the basic unit of life of plants and animals. Rudolf Virchow concluded that all living organisms are the sum of single cellular units and that cells multiply. Copyright © 2018 Elsevier Inc. All rights reserved.

  2. The Coast Artillery Journal. Volume 74, Number 7, November-December 1931

    DTIC Science & Technology

    1931-12-01

    official report of its approach: " Kilauea Volcano , Hawaii , March 6, 1929. "Severe earthquake 2270 miles distant dismantled seismograph here. Tidal wave may...Septem- b(’r 10. 1st Lt. Charles H. Crim from Philip- pines to 62d, Ft. Totten. 1st Lt. Joseph V. deP. Dillon, to sail Kew York for Hawaii December 8, in...jr., from Hawaii to R. O. T. C., University of Alabama, University, Ala. 1st LI. Samuel Rubin, from Philip- pines to 7th, Ft. Hancock. 1st Lt

  3. DISCOVER: A Computer-Based Career Guidance and Counselor-Administrative Support System. Final Report. July 1974-August 1975.

    ERIC Educational Resources Information Center

    Harris-Bowlsbey, JoAnn

    Based on the Computerized Vocational Information System (CVIS), Project DISCOVER was conceptualized in three parts: Guidance subsystem for direct use by individuals at three age levels (grades 4-6, grades 7-12, and adult) seeking career guidance; the counselor-support subsystem; and the administrator support subsystem. Guidance development and…

  4. Application and evaluation of the WRF-CMAQ modeling system to the 2011 DISCOVER-AQ Baltimore-Washington D.C. study

    NASA Astrophysics Data System (ADS)

    Appel, W.; Gilliam, R. C.; Pouliot, G. A.; Godowitch, J. M.; Pleim, J.; Hogrefe, C.; Kang, D.; Roselle, S. J.; Mathur, R.

    2013-12-01

    The DISCOVER-AQ project (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality), is a joint collaboration between NASA, U.S. EPA and a number of other local organizations with the goal of characterizing air quality in urban areas using satellite, aircraft, vertical profiler and ground based measurements (http://discover-aq.larc.nasa.gov). In July 2011, the DISCOVER-AQ project conducted intensive air quality measurements in the Baltimore, MD and Washington, D.C. area in the eastern U.S. To take advantage of these unique data, the Community Multiscale Air Quality (CMAQ) model, coupled with the Weather Research and Forecasting (WRF) model is used to simulate the meteorology and air quality in the same region using 12-km, 4-km and 1-km horizontal grid spacings. The goal of the modeling exercise is to demonstrate the capability of the coupled WRF-CMAQ modeling system to simulate air quality at fine grid spacings in an urban area. Development of new data assimilation techniques and the use of higher resolution input data for the WRF model have been implemented to improve the meteorological results, particularly at the 4-km and 1-km grid resolutions. In addition, a number of updates to the CMAQ model were made to enhance the capability of the modeling system to accurately represent the magnitude and spatial distribution of pollutants at fine model resolutions. Data collected during the 2011 DISCOVER-AQ campaign, which include aircraft transects and spirals, ship measurements in the Chesapeake Bay, ozonesondes, tethered balloon measurements, DRAGON aerosol optical depth measurements, LIDAR measurements, and intensive ground-based site measurements, are used to evaluate results from the WRF-CMAQ modeling system for July 2011 at the three model grid resolutions. The results of the comparisons of the model results to these measurements will be presented, along with results from the various sensitivity simulations

  5. SU-F-T-330: Characterization of the Clinically Released ScandiDos Discover Diode Array for In-Vivo Dose Monitoring

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Saenz, D; Gutierrez, A

    Purpose: The ScandiDos Discover has obtained FDA clearance and is now clinically released. We studied the essential attenuation and beam hardening components as well as tested the diode array’s ability to detect changes in absolute dose and MLC leaf positions. Methods: The ScandiDos Discover was mounted on the heads of an Elekta VersaHD and a Varian 23EX. Beam attenuation measurements were made at 10 cm depth for 6 MV and 18 MV beam energies. The PDD(10) was measured as a metric for the effect on beam quality. Next, a plan consisting of two orthogonal 10 × 10 cm2 fields wasmore » used to adjust the dose per fraction by scaling monitor units to test the absolute dose detection sensitivity of the Discover. A second plan (conformal arc) was then delivered several times independently on the Elekta VersaHD. Artificially introduced MLC position errors in the four central leaves were then added. The errors were incrementally increased from 1 mm to 4 mm and back across seven control points. Results: The absolute dose measured at 10 cm depth decreased by 1.2% and 0.7% for 6 MV and 18 MV beam with the Discover, respectively. Attenuation depended slightly on the field size but only changed the attenuation by 0.1% across 5 × 5 cm{sup 2} and 20 − 20 cm{sup 2} fields. The change in PDD(10) for a 10 − 10 cm{sup 2} field was +0.1% and +0.6% for 6 MV and 18 MV, respectively. Changes in monitor units from −5.0% to 5.0% were faithfully detected. Detected leaf errors were within 1.0 mm of intended errors. Conclusion: A novel in-vivo dosimeter monitoring the radiation beam during treatment was examined through its attenuation and beam hardening characteristics. The device tracked with changes in absolute dose as well as introduced leaf position deviations.« less

  6. Fragment virtual screening based on Bayesian categorization for discovering novel VEGFR-2 scaffolds.

    PubMed

    Zhang, Yanmin; Jiao, Yu; Xiong, Xiao; Liu, Haichun; Ran, Ting; Xu, Jinxing; Lu, Shuai; Xu, Anyang; Pan, Jing; Qiao, Xin; Shi, Zhihao; Lu, Tao; Chen, Yadong

    2015-11-01

    The discovery of novel scaffolds against a specific target has long been one of the most significant but challengeable goals in discovering lead compounds. A scaffold that binds in important regions of the active pocket is more favorable as a starting point because scaffolds generally possess greater optimization possibilities. However, due to the lack of sufficient chemical space diversity of the databases and the ineffectiveness of the screening methods, it still remains a great challenge to discover novel active scaffolds. Since the strengths and weaknesses of both fragment-based drug design and traditional virtual screening (VS), we proposed a fragment VS concept based on Bayesian categorization for the discovery of novel scaffolds. This work investigated the proposal through an application on VEGFR-2 target. Firstly, scaffold and structural diversity of chemical space for 10 compound databases were explicitly evaluated. Simultaneously, a robust Bayesian classification model was constructed for screening not only compound databases but also their corresponding fragment databases. Although analysis of the scaffold diversity demonstrated a very unevenly distribution of scaffolds over molecules, results showed that our Bayesian model behaved better in screening fragments than molecules. Through a literature retrospective research, several generated fragments with relatively high Bayesian scores indeed exhibit VEGFR-2 biological activity, which strongly proved the effectiveness of fragment VS based on Bayesian categorization models. This investigation of Bayesian-based fragment VS can further emphasize the necessity for enrichment of compound databases employed in lead discovery by amplifying the diversity of databases with novel structures.

  7. DISCOVER-AQ: An Overview and Initial Comparisons of NO2 with OMI Observations

    NASA Technical Reports Server (NTRS)

    Pickering, Kenneth; Crawford, James; Krotkov, Nickolay; Bucsela, Eric; Lamsal, Lok; Celarier, Edward; Herman, Jay; Janz, Scott; Cohen, Ron; Weinheimer, Andrew

    2011-01-01

    The first deployment of the Earth Venture -1 DISCOVER-AQ (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality) project was conducted during July 2011 in the Baltimore-Washington region. Two aircraft (a P-3B for in-situ sampling and a King Air for remote sensing) were used along with an extensive array of surface-based in-situ and remote sensing instrumentation. Fourteen flight days were accomplished by both aircraft and over 250 profiles of trace gases and aerosols were performed by the P-3B over surface air quality monitoring stations, which were specially outfitted with sunphotometers and Pandora UV/Vis spectrometers. The King Air flew with the High Spectral Resolution Lidar for aerosols and the ACAM UV/Vis spectrometer for trace gases. This suite of observations allows linkage of surface air quality with the vertical distributions of gases and aerosols, with remotely-sensed column amounts observed from the surface and from the King Air, and with satellite observations from Aura (OMI and TES), GOME-2, MODIS and GOES. The DISCOVER-AQ data will allow determination of under what conditions satellite retrievals are indicative of surface air quality, and they will be useful in planning new satellites. In addition to an overview of the project, a preliminary comparison of tropospheric column NO2 densities from the integration of in-situ P-3B observations, from the Pandoras and ACAM, and from the new Goddard OMI NO2 algorithm will be presented.

  8. Supercomputing in the Age of Discovering Superearths, Earths and Exoplanet Systems

    NASA Technical Reports Server (NTRS)

    Jenkins, Jon M.

    2015-01-01

    NASA's Kepler Mission was launched in March 2009 as NASA's first mission capable of finding Earth-size planets orbiting in the habitable zone of Sun-like stars, that range of distances for which liquid water would pool on the surface of a rocky planet. Kepler has discovered over 1000 planets and over 4600 candidates, many of them as small as the Earth. Today, Kepler's amazing success seems to be a fait accompli to those unfamiliar with her history. But twenty years ago, there were no planets known outside our solar system, and few people believed it was possible to detect tiny Earth-size planets orbiting other stars. Motivating NASA to select Kepler for launch required a confluence of the right detector technology, advances in signal processing and algorithms, and the power of supercomputing.

  9. Towards an improved global understanding of treatment and outcomes in people with type 2 diabetes: Rationale and methods of the DISCOVER observational study program.

    PubMed

    Ji, Linong; Bonnet, Fabrice; Charbonnel, Bernard; Gomes, Marilia B; Kosiborod, Mikhail; Khunti, Kamlesh; Nicolucci, Antonio; Pocock, Stuart; Rathmann, Wolfgang; Shestakova, Marina V; Shimomura, Iichiro; Watada, Hirotaka; Fenici, Peter; Hammar, Niklas; Hashigami, Kiyoshi; Macaraeg, Greg; Surmont, Filip; Medina, Jesús

    2017-07-01

    Contemporary global real-world data on the management of type 2 diabetes are scarce. The global DISCOVER study program aims to describe the disease management patterns and a broad range of associated outcomes in patients with type 2 diabetes initiating a second-line glucose-lowering therapy in routine clinical practice. The DISCOVER program comprises two longitudinal observational studies involving more than 15,000 patients in 38 countries across six continents. Study sites have been selected to be representative of type 2 diabetes management in each country. Data will be collected at baseline (initiation of second-line therapy), at 6months, and yearly during a 3-year follow-up period. The DISCOVER program will record patient, healthcare provider, and healthcare system characteristics, treatment patterns, and factors influencing changes in therapy. In addition, disease control (e.g. achievement of glycated hemoglobin target), management of associated risk factors (e.g. hypercholesterolemia and hypertension), and healthcare resource utilization will be recorded. Microvascular and macrovascular complications, incidence of hypoglycemic events, and patient-reported outcomes will also be captured. The DISCOVER program will provide insights into the current management of patients with type 2 diabetes worldwide, which will contribute to informing future clinical guidelines and improving patient care. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  10. HATS-1b: The First Transiting Planet Discovered by the HATSouth Survey

    NASA Astrophysics Data System (ADS)

    Penev, K.; Bakos, G. Á.; Bayliss, D.; Jordán, A.; Mohler, M.; Zhou, G.; Suc, V.; Rabus, M.; Hartman, J. D.; Mancini, L.; Béky, B.; Csubry, Z.; Buchhave, L.; Henning, T.; Nikolov, N.; Csák, B.; Brahm, R.; Espinoza, N.; Conroy, P.; Noyes, R. W.; Sasselov, D. D.; Schmidt, B.; Wright, D. J.; Tinney, C. G.; Addison, B. C.; Lázár, J.; Papp, I.; Sári, P.

    2013-01-01

    We report the discovery of HATS-1b, a transiting extrasolar planet orbiting the moderately bright V = 12.05 G dwarf star GSC 6652-00186, and the first planet discovered by HATSouth, a global network of autonomous wide-field telescopes. HATS-1b has a period of P ≈ 3.4465 days, mass of Mp ≈ 1.86 M J, and radius of Rp ≈ 1.30 R J. The host star has a mass of 0.99 M ⊙ and radius of 1.04 R ⊙. The discovery light curve of HATS-1b has near-continuous coverage over several multi-day timespans, demonstrating the power of using a global network of telescopes to discover transiting planets. The HATSouth network is operated by a collaboration consisting of Princeton University (PU), the Max Planck Institute für Astronomie (MPIA), and the Australian National University (ANU). The station at Las Campanas Observatory (LCO) of the Carnegie Institute, is operated by PU in conjunction with collaborators at the Pontificia Universidad Católica de Chile (PUC), the station at the High Energy Spectroscopic Survey (HESS) site is operated in conjunction with MPIA, and the station at Siding Spring Observatory (SSO) is operated jointly with ANU. Based in part on observations made with the Nordic Optical Telescope, operated on the island of La Palma in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias. Based on observations made with the MPG/ESO 2.2 m Telescope at the ESO Observatory in La Silla. FEROS ID programmes: P087.A-9014(A), P088.A-9008(A), P089.A-9008(A), P087.C-0508(A). GROND ID programme: 089.A-9006(A). This paper uses observations obtained with facilities of the Las Cumbres Observatory Global Telescope.

  11. Astronomers Discover Spectacular Structure in Distant Galaxy

    NASA Astrophysics Data System (ADS)

    1999-01-01

    Researchers using the National Science Foundation's Very Large Array (VLA) radio telescope have imaged a "spectacular and complex structure" in a galaxy 50 million light-years away. Their work both resolves a decades-old observational mystery and revises current theories about the origin of X-ray emission coming from gas surrounding the galaxy. The new VLA image is of the galaxy M87, which harbors at its core a supermassive black hole spewing out jets of subatomic particles at nearly the speed of light and also is the central galaxy of the Virgo Cluster of galaxies. The VLA image is the first to show detail of a larger structure that originally was detected by radio astronomers more than a half-century ago. Analysis of the new image indicates that astronomers will have to revise their ideas about the physics of what causes X-ray emission in the cores of many galaxy clusters. Frazer Owen of the National Radio Astronomy Observatory (NRAO) in Socorro, NM; Jean Eilek of the New Mexico Institute of Mining and Technology (NM Tech) in Socorro, NM; and Namir Kassim of the Naval Research Laboratory in Washington, DC, announced their discovery at the American Astronomical Society's meeting today in Austin, TX. The new observations show two large, bubble-like lobes, more than 200,000 light-years across, that emit radio waves. These lobes, which are intricately detailed, apparently are powered by gravitational energy released from the black hole at the galaxy's center. "We think that material is flowing outward from the galaxy's core into these large, bright, radio-emitting 'bubbles,'" Owen said. The newly-discovered "bubbles" sit inside a region of the galaxy known to be emitting X-rays. Theorists have speculated that this X-ray emission arises when gas that originally was part of the Virgo Cluster of galaxies, cools and falls inwards onto M87 itself, at the center of the cluster. Such "cooling flows" are commonly thought to be responsible for strong X-ray emission in many

  12. Antibiosis and tolerance discovered in USDA-ARS sorghums resistant to the sugarcane aphid Melanaphis sacchari (Hemiptera: Aphididae)

    USDA-ARS?s Scientific Manuscript database

    The sugarcane aphid, Melanaphis sacchari, was discovered infesting grain sorghum near Beaumont, TX, close to the Texas and Louisiana state line a few miles inland from the Gulf coast in the late summer of 2013, and has been a perennial pest of sorghum through 2016. Our research was aimed at identif...

  13. Fine-scale application of the WRF-CMAQ modeling system to the 2013 DISCOVER-AQ San Joaquin Valley study

    EPA Science Inventory

    The DISCOVER-AQ project (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality), is a joint collaboration between NASA, U.S. EPA and a number of other local organizations with the goal of characterizing air quality in ...

  14. Stochastic Modeling of the Persistence of HIV: Early Population Dynamics

    DTIC Science & Technology

    2013-05-10

    fluid, Brownian motion is named after the botanist Robert Brown. In the late nineteenth century, he observed that pollen floating in water appeared...to move about in a random manner. When he replaced the pollen with inorganic material, he noticed that the motion persisted. Upon plotting the motion

  15. Plants, People, and Politics

    ERIC Educational Resources Information Center

    Galston, Arthur W.

    1970-01-01

    Advocates that some established botanists should become involved in social and political problems to which botanical expertise is relevant. Discusses food production in relation to world population growth, indicating problems on which botanical knowledge and research should be brought to bear. Discusses herbicides and plant growth regulators as…

  16. Discovering operating modes in telemetry data from the Shuttle Reaction Control System

    NASA Technical Reports Server (NTRS)

    Manganaris, Stefanos; Fisher, Doug; Kulkarni, Deepak

    1994-01-01

    This paper addresses the problem of detecting and diagnosing faults in physical systems, for which suitable system models are not available. An architecture is proposed that integrates the on-line acquisition and exploitation of monitoring and diagnostic knowledge. The focus is on the component of the architecture that discovers classes of behaviors with similar characteristics by observing a system in operation. A characterization of behaviors based on best fitting approximation models is investigated. An experimental prototype has been implemented to test it. Preliminary results in diagnosing faults of the reaction control system of the space shuttle are presented. The merits and limitations of the approach are identified and directions for future work are set.

  17. The 3D model of debriefing: defusing, discovering, and deepening.

    PubMed

    Zigmont, Jason J; Kappus, Liana J; Sudikoff, Stephanie N

    2011-04-01

    The experiential learning process involves participation in key experiences and analysis of those experiences. In health care, these experiences can occur through high-fidelity simulation or in the actual clinical setting. The most important component of this process is the postexperience analysis or debriefing. During the debriefing, individuals must reflect upon the experience, identify the mental models that led to behaviors or cognitive processes, and then build or enhance new mental models to be used in future experiences. On the basis of adult learning theory, the Kolb Experiential Learning Cycle, and the Learning Outcomes Model, we structured a framework for facilitators of debriefings entitled "the 3D Model of Debriefing: Defusing, Discovering, and Deepening." It incorporates common phases prevalent in the debriefing literature, including description of and reactions to the experience, analysis of behaviors, and application or synthesis of new knowledge into clinical practice. It can be used to enhance learning after real or simulated events. Copyright © 2011 Elsevier Inc. All rights reserved.

  18. Glowing Hot Transiting Exoplanet Discovered

    NASA Astrophysics Data System (ADS)

    2003-04-01

    VLT Spectra Indicate Shortest-Known-Period Planet Orbiting OGLE-TR-3 Summary More than 100 exoplanets in orbit around stars other than the Sun have been found so far. But while their orbital periods and distances from their central stars are well known, their true masses cannot be determined with certainty, only lower limits. This fundamental limitation is inherent in the common observational method to discover exoplanets - the measurements of small and regular changes in the central star's velocity, caused by the planet's gravitational pull as it orbits the star. However, in two cases so far, it has been found that the exoplanet's orbit happens to be positioned in such a way that the planet moves in front of the stellar disk, as seen from the Earth. This "transit" event causes a small and temporary dip in the star's brightness, as the planet covers a small part of its surface, which can be observed. The additional knowledge of the spatial orientation of the planetary orbit then permits a direct determination of the planet's true mass. Now, a group of German astronomers [1] have found a third star in which a planet, somewhat larger than Jupiter, but only half as massive, moves in front of the central star every 28.5 hours . The crucial observation of this solar-type star, designated OGLE-TR-3 [2] was made with the high-dispersion UVES spectrograph on the Very Large Telescope (VLT) at the ESO Paranal Observatory (Chile). It is the exoplanet with the shortest period found so far and it is very close to the star, only 3.5 million km away. The hemisphere that faces the star must be extremely hot, about 2000 °C and the planet is obviously losing its atmosphere at high rate . PR Photo 10a/03 : The star OGLE-TR-3 . PR Photo 10b/03 : VLT UVES spectrum of OGLE-TR-3. PR Photo 10c/03 : Relation between stellar brightness and velocity (diagram). PR Photo 10d/03 : Observed velocity variation of OGLE-TR-3. PR Photo 10e/03 : Observed brightness variation of OGLE-TR-3. The search

  19. Discovering Hidden Resources: Partners and Volunteers--Assistive Technology Reuse Programs. Conference Proceedings (Decatur, Georgia, May 1-2, 2000).

    ERIC Educational Resources Information Center

    RESNA: Association for the Advancement of Rehabilitation Technology, Arlington, VA.

    This brief paper summarizes proceedings of a May 2000 conference, Discovering Hidden Resources: Partners and Volunteers--Assistive Technology Reuse Programs, hosted by the Rehabilitation Engineering and Assistive Technology Society of North America. The conference focused on different approaches for involving corporate and private partners in…

  20. Trace gas retrievals from Airborne Compact Atmospheric Mapper (ACAM) observations during the 2011 DISCOVER-AQ flight campaign

    NASA Astrophysics Data System (ADS)

    Liu, X.; Kowalewski, M. G.; Janz, S. J.; Bhartia, P. K.; Chance, K.; Krotkov, N. A.; Pickering, K. E.; Crawford, J. H.

    2011-12-01

    The DISCOVER-AQ (Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality) mission has just finished its first flight campaign in the Baltimore-Washington D.C. area in July 2011. The ACAM, flown on board the NASA UC-12 aircraft, includes two spectrographs covering the spectral region 304-900 nm and a high-definition video camera, and is expected to provide column measurements of several important air quality trace gases and aerosols for the DISCOVER-AQ mission. The quick look results for NO2 have been shown to very useful in capturing the strong spatiotemporal variability of NO2. Preliminary fitting of UV/Visible spectra has shown that ACAM measurements have adequate signal to noise ratio to measure the trace gases O2, NO2, HCHO, and maybe SO2 and CHOCHO, at individual pixel resolution, although a great deal of effort is needed to improve the instrument calibration and derive proper reference spectrum for retrieving absolute trace gas column densities. In this study, we present analysis of ACAM instrument calibration including slit function, wavelength registration, and radiometric calibration for both nadir-viewing and zenith-sky measurements. Based on this analysis, an irradiance reference spectrum at ACAM resolution will be derived from a high-resolution reference spectrum with additional correction to account for instrument calibration. Using the derived reference spectrum and/or the measured zenith sky measurements, we will perform non-linear least squares fitting to investigate the retrievals of slant column densities of these trace gases from ACAM measurements, and also use an optimal estimation based algorithm including full radiative transfer calculations to derive the vertical column densities of these trace gases. The initial results will be compared with available in-situ and ground-based measurements taken during the DISCOVER-AQ campaign.

  1. Metabolome analysis for discovering biomarkers of gastroenterological cancer.

    PubMed

    Suzuki, Makoto; Nishiumi, Shin; Matsubara, Atsuki; Azuma, Takeshi; Yoshida, Masaru

    2014-09-01

    Improvements in analytical technologies have made it possible to rapidly determine the concentrations of thousands of metabolites in any biological sample, which has resulted in metabolome analysis being applied to various types of research, such as clinical, cell biology, and plant/food science studies. The metabolome represents all of the end products and by-products of the numerous complex metabolic pathways operating in a biological system. Thus, metabolome analysis allows one to survey the global changes in an organism's metabolic profile and gain a holistic understanding of the changes that occur in organisms during various biological processes, e.g., during disease development. In clinical metabolomic studies, there is a strong possibility that differences in the metabolic profiles of human specimens reflect disease-specific states. Recently, metabolome analysis of biofluids, e.g., blood, urine, or saliva, has been increasingly used for biomarker discovery and disease diagnosis. Mass spectrometry-based techniques have been extensively used for metabolome analysis because they exhibit high selectivity and sensitivity during the identification and quantification of metabolites. Here, we describe metabolome analysis using liquid chromatography-mass spectrometry, gas chromatography-mass spectrometry, and capillary electrophoresis-mass spectrometry. Furthermore, the findings of studies that attempted to discover biomarkers of gastroenterological cancer are also outlined. Finally, we discuss metabolome analysis-based disease diagnosis. Copyright © 2014 Elsevier B.V. All rights reserved.

  2. Evolving management strategies for a recently discovered exotic forest pest: the pine shoot beetle, Tomicus piniperda (Coleoptera)

    Treesearch

    Robert A. Haack; Therese M. Poland

    2001-01-01

    Established populations of the Eurasian pine shoot beetle (Tomicus piniperda (L.); Coleoptera: Scolytidae) were first discovered in North America in Ohio in 1992. As of 31 December 2000, T. piniperda was found in 303 counties in 12 US states (Illinois, Indiana, Maine, Maryland, Michigan, New Hampshire, New York, Ohio, Pennsylvania, Vermont, West Virginia, and...

  3. Undergraduates Discovering Folds in ''Flat'' Strata: An Unusual Undergraduate Geology Field Methods Course

    ERIC Educational Resources Information Center

    Abolins, Mark

    2014-01-01

    Undergraduates learned to measure, map, and interpret bedding plane attitudes during a semesterlong geology field methods course in a field area where strata dip less than 98. Despite the low dip of the strata, 2011 field course students discovered a half-kilometer-wide structural basin by using digital levels and Brunton pocket transits to…

  4. Bioturbo similarity searching: combining chemical and biological similarity to discover structurally diverse bioactive molecules.

    PubMed

    Wassermann, Anne Mai; Lounkine, Eugen; Glick, Meir

    2013-03-25

    Virtual screening using bioactivity profiles has become an integral part of currently applied hit finding methods in pharmaceutical industry. However, a significant drawback of this approach is that it is only applicable to compounds that have been biologically tested in the past and have sufficient activity annotations for meaningful profile comparisons. Although bioactivity data generated in pharmaceutical institutions are growing on an unprecedented scale, the number of biologically annotated compounds still covers only a minuscule fraction of chemical space. For a newly synthesized compound or an isolated natural product to be biologically characterized across multiple assays, it may take a considerable amount of time. Consequently, this chemical matter will not be included in virtual screening campaigns based on bioactivity profiles. To overcome this problem, we herein introduce bioturbo similarity searching that uses chemical similarity to map molecules without biological annotations into bioactivity space and then searches for biologically similar compounds in this reference system. In benchmark calculations on primary screening data, we demonstrate that our approach generally achieves higher hit rates and identifies structurally more diverse compounds than approaches using chemical information only. Furthermore, our method is able to discover hits with novel modes of inhibition that traditional 2D and 3D similarity approaches are unlikely to discover. Test calculations on a set of natural products reveal the practical utility of the approach for identifying novel and synthetically more accessible chemical matter.

  5. Evaluation and Comparison of Methods for Measuring Ozone and NO2 Concentrations in Ambient Air during DISCOVER-AQ

    EPA Science Inventory

    Ambient evaluations of the various ozone and NO2 methods were conducted during field intensive studies as part of the NASA DISCOVER-AQ project conducted during July 2011 near Baltimore, MD; January – February 2013 in the San Juaquin valley, CA; September 2013 in Houston, TX...

  6. Strategy to discover diverse optimal molecules in the small molecule universe.

    PubMed

    Rupakheti, Chetan; Virshup, Aaron; Yang, Weitao; Beratan, David N

    2015-03-23

    The small molecule universe (SMU) is defined as a set of over 10(60) synthetically feasible organic molecules with molecular weight less than ∼500 Da. Exhaustive enumerations and evaluation of all SMU molecules for the purpose of discovering favorable structures is impossible. We take a stochastic approach and extend the ACSESS framework ( Virshup et al. J. Am. Chem. Soc. 2013 , 135 , 7296 - 7303 ) to develop diversity oriented molecular libraries that can generate a set of compounds that is representative of the small molecule universe and that also biases the library toward favorable physical property values. We show that the approach is efficient compared to exhaustive enumeration and to existing evolutionary algorithms for generating such libraries by testing in the NKp fitness landscape model and in the fully enumerated GDB-9 chemical universe containing 3 × 10(5) molecules.

  7. Enterobius vermicularis Eggs Discovered in Coprolites from a Medieval Korean Mummy

    PubMed Central

    Shin, Dong Hoon; Oh, Chang Seok; Chai, Jong-Yil; Lee, Hye-Jung

    2011-01-01

    While the presence of pinworm eggs in archaeological samples has been reported by many researchers in the New World, those have been detected very scarcely in the Old World, especially in East Asian countries. In fact, many parasite species were recovered from the archeological remains in Korea, eggs of Enterobius vermicularis had not been found. Recently, a female mummy buried in the 17th century was discovered in the Joseon tomb from Dangjin-gun, Chungcheongnam-do, Korea. After rehydration process for 12 days, investigations were carried on the luminal surface of the colon. From them, 3 eggs of E. vermicularis were recovered. They were elliptical, transparent with a thin egg shell, 50.3±5.2 µm (length) and 28.2±3.9 µm (width) in size. This is the first discovery of E. vermicularis eggs in East Asia. PMID:22072838

  8. Enterobius vermicularis eggs discovered in coprolites from a medieval Korean mummy.

    PubMed

    Shin, Dong Hoon; Oh, Chang Seok; Chai, Jong-Yil; Lee, Hye-Jung; Seo, Min

    2011-09-01

    While the presence of pinworm eggs in archaeological samples has been reported by many researchers in the New World, those have been detected very scarcely in the Old World, especially in East Asian countries. In fact, many parasite species were recovered from the archeological remains in Korea, eggs of Enterobius vermicularis had not been found. Recently, a female mummy buried in the 17th century was discovered in the Joseon tomb from Dangjin-gun, Chungcheongnam-do, Korea. After rehydration process for 12 days, investigations were carried on the luminal surface of the colon. From them, 3 eggs of E. vermicularis were recovered. They were elliptical, transparent with a thin egg shell, 50.3±5.2 µm (length) and 28.2±3.9 µm (width) in size. This is the first discovery of E. vermicularis eggs in East Asia.

  9. Antitumor antibiotics discovered and studied at the Institute of Microbial Chemistry.

    PubMed

    Takeuchi, T

    1995-01-01

    In 1951, we were pioneers in initiating screening of antitumor agents from microbial metabolites. We discovered bleomycin in 1962 and aclacinomycin in 1975. Peplomycin, a derivative of bleomycin, and pirarubicin, a tetrahydropyranyl derivative of doxorubicin, were also studied. All of them have been clinically used for the treatment of cancer. Using new screening methods, we isolated spergualin in 1982. This agent exhibited immunosuppressive activity as well as antitumor activity. Deoxyspergualin, a derivative of spergualin, is now clinically used for the treatment of acute rejection after kidney transplantation. Bestatin was screened as an inhibitor of aminopeptidase B in 1976. It binds to the aminopeptidases located on the cell membrane of immunocompetent cells and modulates immune responses. It is now used for the treatment of acute non-lymphocytic leukemia. Microbial metabolites will become more important as a source of anticancer drugs in the future.

  10. Strategy To Discover Diverse Optimal Molecules in the Small Molecule Universe

    PubMed Central

    2015-01-01

    The small molecule universe (SMU) is defined as a set of over 1060 synthetically feasible organic molecules with molecular weight less than ∼500 Da. Exhaustive enumerations and evaluation of all SMU molecules for the purpose of discovering favorable structures is impossible. We take a stochastic approach and extend the ACSESS framework (Virshup et al. J. Am. Chem. Soc.2013, 135, 7296–730323548177) to develop diversity oriented molecular libraries that can generate a set of compounds that is representative of the small molecule universe and that also biases the library toward favorable physical property values. We show that the approach is efficient compared to exhaustive enumeration and to existing evolutionary algorithms for generating such libraries by testing in the NKp fitness landscape model and in the fully enumerated GDB-9 chemical universe containing 3 × 105 molecules. PMID:25594586

  11. Plant Study Guide.

    ERIC Educational Resources Information Center

    Brynildson, Inga

    Appropriate for secondary school botany instruction, this study guide focuses on the important roles of plants in human lives. Following a rationale for learning the basic skills of a botanist, separate sections discuss the process sunlight undergoes during photosynthesis, the flow of energy in the food chain, alternative plant lifestyles, plant…

  12. iPTF17cw: An Engine-driven Supernova Candidate Discovered Independent of a Gamma-Ray Trigger

    NASA Astrophysics Data System (ADS)

    Corsi, A.; Cenko, S. B.; Kasliwal, M. M.; Quimby, R.; Kulkarni, S. R.; Frail, D. A.; Goldstein, A. M.; Blagorodnova, N.; Connaughton, V.; Perley, D. A.; Singer, L. P.; Copperwheat, C. M.; Fremling, C.; Kupfer, T.; Piascik, A. S.; Steele, I. A.; Taddia, F.; Vedantham, H.; Kutyrev, A.; Palliyaguru, N. T.; Roberts, O.; Sollerman, J.; Troja, E.; Veilleux, S.

    2017-09-01

    We present the discovery, classification, and radio-to-X-ray follow-up observations of iPTF17cw, a broad-lined (BL) type Ic supernova (SN) discovered by the intermediate Palomar Transient Factory (iPTF). Although it is unrelated to the gravitational wave trigger, this SN was discovered as a happy by-product of the extensive observational campaign dedicated to the follow-up of Advanced LIGO event GW 170104. The spectroscopic properties and inferred peak bolometric luminosity of iPTF17cw are most similar to the gamma-ray-burst (GRB)-associated SN, SN 1998bw, while the shape of the r-band light curve is most similar to that of the relativistic SN, SN 2009bb. Karl G. Jansky Very Large Array (VLA) observations of the iPTF17cw field reveal a radio counterpart ≈10 times less luminous than SN 1998bw, and with a peak radio luminosity comparable to that of SN 2006aj/GRB 060218 and SN 2010bh/GRB 100316D. Our radio observations of iPTF17cw imply a relativistically expanding outflow. However, further late-time observations with the VLA in its most extended configuration are needed to confirm fading of the iPTF17cw radio counterpart at all frequencies. X-ray observations carried out with Chandra reveal the presence of an X-ray counterpart with a luminosity similar to that of SN 2010bh/GRB 100316D. Searching the Fermi catalog for possible γ-rays reveals that GRB 161228B is spatially and temporally compatible with iPTF17cw. The similarity to SN 1998bw and SN 2009bb, the radio and X-ray detections, and the potential association with GRB 161228B all point to iPTF17cw being a new candidate member of the rare sample of optically discovered engine-driven BL-Ic SNe associated with relativistic ejecta.

  13. iPTF17cw: An Engine-driven Supernova Candidate Discovered Independent of a Gamma-Ray Trigger

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Corsi, A.; Palliyaguru, N. T.; Cenko, S. B.

    We present the discovery, classification, and radio-to-X-ray follow-up observations of iPTF17cw, a broad-lined (BL) type Ic supernova (SN) discovered by the intermediate Palomar Transient Factory (iPTF). Although it is unrelated to the gravitational wave trigger, this SN was discovered as a happy by-product of the extensive observational campaign dedicated to the follow-up of Advanced LIGO event GW 170104. The spectroscopic properties and inferred peak bolometric luminosity of iPTF17cw are most similar to the gamma-ray-burst (GRB)-associated SN, SN 1998bw, while the shape of the r -band light curve is most similar to that of the relativistic SN, SN 2009bb. Karl G.more » Jansky Very Large Array (VLA) observations of the iPTF17cw field reveal a radio counterpart ≈10 times less luminous than SN 1998bw, and with a peak radio luminosity comparable to that of SN 2006aj/GRB 060218 and SN 2010bh/GRB 100316D. Our radio observations of iPTF17cw imply a relativistically expanding outflow. However, further late-time observations with the VLA in its most extended configuration are needed to confirm fading of the iPTF17cw radio counterpart at all frequencies. X-ray observations carried out with Chandra reveal the presence of an X-ray counterpart with a luminosity similar to that of SN 2010bh/GRB 100316D. Searching the Fermi catalog for possible γ -rays reveals that GRB 161228B is spatially and temporally compatible with iPTF17cw. The similarity to SN 1998bw and SN 2009bb, the radio and X-ray detections, and the potential association with GRB 161228B all point to iPTF17cw being a new candidate member of the rare sample of optically discovered engine-driven BL-Ic SNe associated with relativistic ejecta.« less

  14. Using electronic patient records to discover disease correlations and stratify patient cohorts.

    PubMed

    Roque, Francisco S; Jensen, Peter B; Schmock, Henriette; Dalgaard, Marlene; Andreatta, Massimo; Hansen, Thomas; Søeby, Karen; Bredkjær, Søren; Juul, Anders; Werge, Thomas; Jensen, Lars J; Brunak, Søren

    2011-08-01

    Electronic patient records remain a rather unexplored, but potentially rich data source for discovering correlations between diseases. We describe a general approach for gathering phenotypic descriptions of patients from medical records in a systematic and non-cohort dependent manner. By extracting phenotype information from the free-text in such records we demonstrate that we can extend the information contained in the structured record data, and use it for producing fine-grained patient stratification and disease co-occurrence statistics. The approach uses a dictionary based on the International Classification of Disease ontology and is therefore in principle language independent. As a use case we show how records from a Danish psychiatric hospital lead to the identification of disease correlations, which subsequently can be mapped to systems biology frameworks.

  15. HUBBLE AND KECK DISCOVER GALAXY BUILDING BLOCK

    NASA Technical Reports Server (NTRS)

    2002-01-01

    This NASA Hubble Space Telescope image shows a very small, faint galaxy 'building block' newly discovered by a unique collaboration between ground- and space-based telescopes. Hubble and the 10-meter Keck Telescopes in Hawaii joined forces, using a galaxy cluster which acts as gravitational lens to detect what scientists believe is one of the smallest very distant objects ever found. The galaxy cluster Abell 2218 was used by a team of European and American astronomers led by Richard Ellis (Caltech) in their systematic search for intrinsically faint distant star-forming systems. Without help from Abell 2218's exceptional magnifying power to make objects appear about 30 times brighter, the galaxy building block would have been undetectable. In the image to the right, the object is seen distorted into two nearly identical, very red 'images' by the gravitational lens. The image pair represents the magnified result of a single background object gravitationally lensed by Abell 2218 and viewed at a distance of 13.4 billion light-years. The intriguing object contains only one million stars, far fewer than a mature galaxy, and scientists believe it is very young. Such young star-forming systems of low mass at early cosmic times are likely to be the objects from which present-day galaxies have formed. In the image to the left, the full overview of the galaxy cluster Abell 2218 is seen. This image was taken by Hubble in 1999 at the completion of Hubble Servicing Mission 3A. Credit: NASA, ESA, Richard Ellis (Caltech) and Jean-Paul Kneib (Observatoire Midi-Pyrenees, France) Acknowledgment: NASA, A. Fruchter and the ERO Team (STScI and ST-ECF)

  16. Modeling Air Quality in the San Joaquin Valley during the 2013 DISCOVER-AQ Field Campaign

    NASA Astrophysics Data System (ADS)

    Chen, J.; Zhao, Z.; Cai, C.; Avise, J.; DaMassa, J.; Kaduwela, A. P.

    2014-12-01

    The San Joaquin Valley (SJV) in California frequently experiences elevated PM2.5 concentrations during winter months. The DISCOVER-AQ (Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality) field campaign conducted by NASA took place in the SJV from January 16 to February 06, 2013. This campaign captured two elevated PM2.5 events in Bakersfield where the 24-hour surface PM2.5 exceeded 70 μg/m3 (more than double the 24-hour PM2.5 Standard of 35 μg/m3). The campaign provided unparalleled surface, vertical and column measurements of a suite of gaseous and particulate pollutants in the SJV, which have not been available for over a decade since the last major PM field campaign (CRPAQS in 2000-2001). The U.S. EPA CMAQ model was used to investigate PM formation and buildup throughout the DISCOVER-AQ time period. Model performance will be presented for both surface and vertical profiles of a variety of gases (e.g., O3, NOx, PAN, HNO3, NH3, HCHO and other selected VOCs) and PM species (e.g., nitrate, sulfate, ammonium, black carbon, and organic compounds (OC)), as well as the sensitivity of PM formation and buildup to the simulated meteorological fields. Areas for future model improvements will be also highlighted.

  17. Botanical and Commercial Range of Tamarack In the Lake States

    Treesearch

    Paul O. Rudolf

    1966-01-01

    Accurate maps showing the distribution of important tree species are valuable to foresters, botanists, wildlife specialists, land managers, and others. Although the general natural ranges for our principal tree species have been well known for some time, new information continutes to develop. Commercial ranges, hoever have not previously been mapped precisely, and...

  18. Botanical and Commercial Range of Balsam Fir In the Lake States

    Treesearch

    Paul O. Rudolf

    1966-01-01

    Accurate maps showing the distribution of important tree species are valuable to foresters, botanists, wildlife specialists, land managers, and others. Although the general natural ranges for our principal tree species have been well known for some time, new information continues to develop. Commercial ranges, hoever, have not previously been mapped precisely, and...

  19. Radial wood Allocation in Schizolobium Parahyba

    Treesearch

    G. Bruce Williamson; Michael C. Wiemann; James P. Geaghan

    2012-01-01

    The diversity of tropical trees has captivated botanists for centuries. Woods of difterent species, not only differ in appearance, but also in functional traits-density, porosity and strength-characteristics that relate to various plant functions such as support and conduction. The specific gravity (SG) of wood is a species' trait that integrates mechanical...

  20. Comparison of neurofuzzy logic and decision trees in discovering knowledge from experimental data of an immediate release tablet formulation.

    PubMed

    Shao, Q; Rowe, R C; York, P

    2007-06-01

    Understanding of the cause-effect relationships between formulation ingredients, process conditions and product properties is essential for developing a quality product. However, the formulation knowledge is often hidden in experimental data and not easily interpretable. This study compares neurofuzzy logic and decision tree approaches in discovering hidden knowledge from an immediate release tablet formulation database relating formulation ingredients (silica aerogel, magnesium stearate, microcrystalline cellulose and sodium carboxymethylcellulose) and process variables (dwell time and compression force) to tablet properties (tensile strength, disintegration time, friability, capping and drug dissolution at various time intervals). Both approaches successfully generated useful knowledge in the form of either "if then" rules or decision trees. Although different strategies are employed by the two approaches in generating rules/trees, similar knowledge was discovered in most cases. However, as decision trees are not able to deal with continuous dependent variables, data discretisation procedures are generally required.

  1. Discovering New Acetylcholinesterase Inhibitors by Mining the Buzhongyiqi Decoction Recipe Data.

    PubMed

    Cui, Lu; Wang, Yu; Liu, Zhihong; Chen, Hongzhuan; Wang, Hao; Zhou, Xinxin; Xu, Jun

    2015-11-23

    Myasthenia gravis (MG) is a neuromuscular disease that is conventionally treated with acetylcholinesterase (AChE) inhibitors, which may not fully remove the symptom for many reasons. When AChE inhibitors do not work, Chinese patients turn to Chinese medicine, such as the Buzhongyiqi decoction (BD), to treat MG. By elucidating the relations between the herbs of the Buzhongyiqi decoction recipe and AChE inhibitors with structure-based and ligand-based drug design methods and chemoinformatics approaches, we have found the key active components of BD. Using these key active components as templates, we have discovered five new AChE inhibitors through virtual screening of a commercial compound library. The new AChE inhibitors have been confirmed with Ellman assays. This study demonstrates that lead identification can be inspired by elucidating Chinese medicine. Since BD is a mixture, further studies against other drug targets are needed.

  2. Evaluating WRF Simulations of Urban Boundary Layer Processes during DISCOVER-AQ

    NASA Astrophysics Data System (ADS)

    Hegarty, J. D.; Henderson, J.; Lewis, J. R.; McGrath-Spangler, E. L.; Scarino, A. J.; Ferrare, R. A.; DeCola, P.; Welton, E. J.

    2015-12-01

    The accurate representation of processes in the planetary boundary layer (PBL) in meteorological models is of prime importance to air quality and greenhouse gas simulations as it governs the depth to which surface emissions are vertically mixed and influences the efficiency by which they are transported downwind. In this work we evaluate high resolution (~1 km) WRF simulations of PBL processes in the Washington DC - Baltimore and Houston urban areas during the respective DISCOVER-AQ 2011 and 2013 field campaigns using MPLNET micro-pulse lidar (MPL), mini-MPL, airborne high spectral resolution lidar (HSRL), Doppler wind profiler and CALIPSO satellite measurements along with complimentary surface and aircraft measurements. We will discuss how well WRF simulates the spatiotemporal variability of the PBL height in the urban areas and the development of fine-scale meteorological features such as bay and sea breezes that influence the air quality of the urban areas studied.

  3. Cellular metabolic network analysis: discovering important reactions in Treponema pallidum.

    PubMed

    Chen, Xueying; Zhao, Min; Qu, Hong

    2015-01-01

    T. pallidum, the syphilis-causing pathogen, performs very differently in metabolism compared with other bacterial pathogens. The desire for safe and effective vaccine of syphilis requests identification of important steps in T. pallidum's metabolism. Here, we apply Flux Balance Analysis to represent the reactions quantitatively. Thus, it is possible to cluster all reactions in T. pallidum. By calculating minimal cut sets and analyzing topological structure for the metabolic network of T. pallidum, critical reactions are identified. As a comparison, we also apply the analytical approaches to the metabolic network of H. pylori to find coregulated drug targets and unique drug targets for different microorganisms. Based on the clustering results, all reactions are further classified into various roles. Therefore, the general picture of their metabolic network is obtained and two types of reactions, both of which are involved in nucleic acid metabolism, are found to be essential for T. pallidum. It is also discovered that both hubs of reactions and the isolated reactions in purine and pyrimidine metabolisms play important roles in T. pallidum. These reactions could be potential drug targets for treating syphilis.

  4. Discovering Black Soap: A Survey on the Attitudes and Practices of Black Soap Users.

    PubMed

    Lin, Ann; Nabatian, Adam; Halverstam, Caroline P

    2017-07-01

    OBJECTIVE: The purpose of this study was to discover the general attitudes and practices of black soap users with regard to amelioration of various dermatologic conditions. DESIGN: This was a prospective questionnaire-based study with a sample size of 100 black soap users. Setting: Outpatient dermatology clinics of Montefiore Medical Center and other Albert Einstein affiliated dermatology clinics in Bronx, New York. PARTICIPANTS: One hundred subjects who have used black soap were recruited. MEASUREMENTS: The participants evaluated and reported their attitudes and applications of black soap. Data on sociodemographic prevalence and user satisfactions of black soap were collected and analyzed. RESULTS: The age distribution of participants was uniform among the specified age categories: 1) 18 to 29 years; 2) 30 to 39 years, 3) 40 to 49 yesars, and 4) 50 years and older. The sex distribution favored women, comprising 74 percent of those surveyed. A significant number of participants were born in either Africa (23%) or the Caribbean (19%). Black soap usage was applied to mitigate many dermatologic conditions, including acne (23%), dark spots (20%), razor bumps (13%), eczema (7%), and fine lines (4%). The most popular usage was for overall skin care (70%). The vast majority of users found black soap helpful for their skin condition (51% very satisfied, and 40% somewhat satisfied). Conclusion: The survey results indicate widespread usage and satisfaction with black soap for reduction in symptoms of various dermatologic conditions. Further investigations are warranted to discover active ingredients present in black soap that may unveil future therapeutic options for various dermatologic conditions.

  5. 25 CFR 224.87 - What are the obligations of a tribe if it discovers a violation or breach?

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 25 Indians 1 2010-04-01 2010-04-01 false What are the obligations of a tribe if it discovers a violation or breach? 224.87 Section 224.87 Indians BUREAU OF INDIAN AFFAIRS, DEPARTMENT OF THE INTERIOR ENERGY AND MINERALS TRIBAL ENERGY RESOURCE AGREEMENTS UNDER THE INDIAN TRIBAL ENERGY DEVELOPMENT AND SELF...

  6. Discovering biclusters in gene expression data based on high-dimensional linear geometries

    PubMed Central

    Gan, Xiangchao; Liew, Alan Wee-Chung; Yan, Hong

    2008-01-01

    Background In DNA microarray experiments, discovering groups of genes that share similar transcriptional characteristics is instrumental in functional annotation, tissue classification and motif identification. However, in many situations a subset of genes only exhibits consistent pattern over a subset of conditions. Conventional clustering algorithms that deal with the entire row or column in an expression matrix would therefore fail to detect these useful patterns in the data. Recently, biclustering has been proposed to detect a subset of genes exhibiting consistent pattern over a subset of conditions. However, most existing biclustering algorithms are based on searching for sub-matrices within a data matrix by optimizing certain heuristically defined merit functions. Moreover, most of these algorithms can only detect a restricted set of bicluster patterns. Results In this paper, we present a novel geometric perspective for the biclustering problem. The biclustering process is interpreted as the detection of linear geometries in a high dimensional data space. Such a new perspective views biclusters with different patterns as hyperplanes in a high dimensional space, and allows us to handle different types of linear patterns simultaneously by matching a specific set of linear geometries. This geometric viewpoint also inspires us to propose a generic bicluster pattern, i.e. the linear coherent model that unifies the seemingly incompatible additive and multiplicative bicluster models. As a particular realization of our framework, we have implemented a Hough transform-based hyperplane detection algorithm. The experimental results on human lymphoma gene expression dataset show that our algorithm can find biologically significant subsets of genes. Conclusion We have proposed a novel geometric interpretation of the biclustering problem. We have shown that many common types of bicluster are just different spatial arrangements of hyperplanes in a high dimensional data

  7. Discovering monotonic stemness marker genes from time-series stem cell microarray data.

    PubMed

    Wang, Hsei-Wei; Sun, Hsing-Jen; Chang, Ting-Yu; Lo, Hung-Hao; Cheng, Wei-Chung; Tseng, George C; Lin, Chin-Teng; Chang, Shing-Jyh; Pal, Nikhil; Chung, I-Fang

    2015-01-01

    Identification of genes with ascending or descending monotonic expression patterns over time or stages of stem cells is an important issue in time-series microarray data analysis. We propose a method named Monotonic Feature Selector (MFSelector) based on a concept of total discriminating error (DEtotal) to identify monotonic genes. MFSelector considers various time stages in stage order (i.e., Stage One vs. other stages, Stages One and Two vs. remaining stages and so on) and computes DEtotal of each gene. MFSelector can successfully identify genes with monotonic characteristics. We have demonstrated the effectiveness of MFSelector on two synthetic data sets and two stem cell differentiation data sets: embryonic stem cell neurogenesis (ESCN) and embryonic stem cell vasculogenesis (ESCV) data sets. We have also performed extensive quantitative comparisons of the three monotonic gene selection approaches. Some of the monotonic marker genes such as OCT4, NANOG, BLBP, discovered from the ESCN dataset exhibit consistent behavior with that reported in other studies. The role of monotonic genes found by MFSelector in either stemness or differentiation is validated using information obtained from Gene Ontology analysis and other literature. We justify and demonstrate that descending genes are involved in the proliferation or self-renewal activity of stem cells, while ascending genes are involved in differentiation of stem cells into variant cell lineages. We have developed a novel system, easy to use even with no pre-existing knowledge, to identify gene sets with monotonic expression patterns in multi-stage as well as in time-series genomics matrices. The case studies on ESCN and ESCV have helped to get a better understanding of stemness and differentiation. The novel monotonic marker genes discovered from a data set are found to exhibit consistent behavior in another independent data set, demonstrating the utility of the proposed method. The MFSelector R function and data

  8. Utilizing Electronic Medical Records to Discover Changing Trends of Medical Behaviors Over Time*

    PubMed Central

    Yin, Liangying; Dong, Wei; He, Chunhua; Duan, Huilong

    2017-01-01

    Summary Objectives Medical behaviors are playing significant roles in the delivery of high quality and cost-effective health services. Timely discovery of changing frequencies of medical behaviors is beneficial for the improvement of health services. The main objective of this work is to discover the changing trends of medical behaviors over time. Methods This study proposes a two-steps approach to detect essential changing patterns of medical behaviors from Electronic Medical Records (EMRs). In detail, a probabilistic topic model, i.e., Latent Dirichlet allocation (LDA), is firstly applied to disclose yearly treatment patterns in regard to the risk stratification of patients from a large volume of EMRs. After that, the changing trends by comparing essential/critical medical behaviors in a specific time period are detected and analyzed, including changes of significant patient features with their values, and changes of critical treatment interventions with their occurring time stamps. Results We verify the effectiveness of the proposed approach on a clinical dataset containing 12,152 patient cases with a time range of 10 years. Totally, 135 patients features and 234 treatment interventions in three treatment patterns were selected to detect their changing trends. In particular, evolving trends of yearly occurring probabilities of the selected medical behaviors were categorized into six content changing patterns (i.e, 112 growing, 123 declining, 43 up-down, 16 down-up, 35 steady, and 40 jumping), using the proposed approach. Besides, changing trends of execution time of treatment interventions were classified into three occurring time changing patterns (i.e., 175 early-implemented, 50 steady-implemented and 9 delay-implemented). Conclusions Experimental results show that our approach has an ability to utilize EMRs to discover essential evolving trends of medical behaviors, and thus provide significant potential to be further explored for health services redesign and

  9. Cultural diversity in heart failure management: findings from the DISCOVER study (Part 2).

    PubMed

    Davidson, Patricia M; Macdonald, Peter; Moser, Debra K; Ang, Esther; Paull, Glenn; Choucair, Sam; Daly, John; Gholizadeh, Leila; Dracup, Kathleen

    2007-01-01

    Self-management is a critical dimension in managing chronic conditions, particularly in heart failure (HF). Knowledge, attitudes and beliefs, relating to both illness and wellness, are strongly influenced by culture and ethnicity, impacting upon an individual's capacity to engage in self-care behaviours. Effective management of HF is largely dependent on facilitation of culturally informed, self-care behaviours to increase adherence to both pharmacological and non-pharmacological strategies. The Understanding the cultural experiences of individuals with chronic heart failure (CHF) in South East Health (DISCOVER) study is an exploratory, observational study investigating health patterns, information needs and the adjustment process for overseas-born people with HF living in Australia. An integrative literature review was augmented by qualitative data derived from key informant interviews, focus groups and individual interviews. A key finding of this study is that culture provides an important context to aid interpretations of attitudes, values, beliefs and behaviours, not only in illness but in health. While individual differences in attitudes and beliefs were observed among participants, common themes and issues were identified across cultural groups. Data from the DISCOVER study revealed the primacy of family and kinship ties. These relationships were important in making decisions about treatment choices and care plans. Participants also revealed the critical role of the 'family doctor' in assisting people and their families in brokering the health care system. In this study, heart disease was considered to be a significant condition but cancer was the condition that people both feared and dreaded the most, despite the high mortality rates of HF. This sample reported that religious and traditional beliefs became more important as people aged and considered their mortality. As HF is predominately a condition of ageing, the information derived from this study will

  10. Utilizing Electronic Medical Records to Discover Changing Trends of Medical Behaviors Over Time.

    PubMed

    Yin, Liangying; Huang, Zhengxing; Dong, Wei; He, Chunhua; Duan, Huilong

    2017-05-05

    Medical behaviors are playing significant roles in the delivery of high quality and cost-effective health services. Timely discovery of changing frequencies of medical behaviors is beneficial for the improvement of health services. The main objective of this work is to discover the changing trends of medical behaviors over time. This study proposes a two-steps approach to detect essential changing patterns of medical behaviors from Electronic Medical Records (EMRs). In detail, a probabilistic topic model, i.e., Latent Dirichlet allocation (LDA), is firstly applied to disclose yearly treatment patterns in regard to the risk stratification of patients from a large volume of EMRs. After that, the changing trends by comparing essential/critical medical behaviors in a specific time period are detected and analyzed, including changes of significant patient features with their values, and changes of critical treatment interventions with their occurring time stamps. We verify the effectiveness of the proposed approach on a clinical dataset containing 12,152 patient cases with a time range of 10 years. Totally, 135 patients features and 234 treatment interventions in three treatment patterns were selected to detect their changing trends. In particular, evolving trends of yearly occurring probabilities of the selected medical behaviors were categorized into six content changing patterns (i.e, 112 growing, 123 declining, 43 up-down, 16 down-up, 35 steady, and 40 jumping), using the proposed approach. Besides, changing trends of execution time of treatment interventions were classified into three occurring time changing patterns (i.e., 175 early-implemented, 50 steady-implemented and 9 delay-implemented). Experimental results show that our approach has an ability to utilize EMRs to discover essential evolving trends of medical behaviors, and thus provide significant potential to be further explored for health services redesign and improvement.

  11. Newly discovered sediment rock-hosted disseminated gold deposits in the People's Republic of China

    USGS Publications Warehouse

    Cunningham, Charles G.; Ashley, Roger P.; Chou, I. -Ming; Huang, Zushu; Chaoyuan, Wan; Li, Wenkang

    1988-01-01

    Five deposits discovered in Guizhou Province, Yata, Getang, Sanchahe, Ceyang, and Banqi are described for the first time in Western literature. The deposits have geologic features and geochemical signatures that are remarkably similar to those of sedimentary rock-hosted precious metal deposits in the United States. The sizes of the deposits are as yet undetermined, but they each contain significant reserves at average grades of 4 to 5 g of gold per metric ton. Exploration and drilling are in progress at all of the deposits, and other areas where the geologic setting and geochemical anomalies are similar are being tested.

  12. Prediction of Human Activity by Discovering Temporal Sequence Patterns.

    PubMed

    Li, Kang; Fu, Yun

    2014-08-01

    Early prediction of ongoing human activity has become more valuable in a large variety of time-critical applications. To build an effective representation for prediction, human activities can be characterized by a complex temporal composition of constituent simple actions and interacting objects. Different from early detection on short-duration simple actions, we propose a novel framework for long -duration complex activity prediction by discovering three key aspects of activity: Causality, Context-cue, and Predictability. The major contributions of our work include: (1) a general framework is proposed to systematically address the problem of complex activity prediction by mining temporal sequence patterns; (2) probabilistic suffix tree (PST) is introduced to model causal relationships between constituent actions, where both large and small order Markov dependencies between action units are captured; (3) the context-cue, especially interactive objects information, is modeled through sequential pattern mining (SPM), where a series of action and object co-occurrence are encoded as a complex symbolic sequence; (4) we also present a predictive accumulative function (PAF) to depict the predictability of each kind of activity. The effectiveness of our approach is evaluated on two experimental scenarios with two data sets for each: action-only prediction and context-aware prediction. Our method achieves superior performance for predicting global activity classes and local action units.

  13. Discovering cancer vulnerabilities using high-throughput micro-RNA screening.

    PubMed

    Nikolic, Iva; Elsworth, Benjamin; Dodson, Eoin; Wu, Sunny Z; Gould, Cathryn M; Mestdagh, Pieter; Marshall, Glenn M; Horvath, Lisa G; Simpson, Kaylene J; Swarbrick, Alexander

    2017-12-15

    Micro-RNAs (miRNAs) are potent regulators of gene expression and cellular phenotype. Each miRNA has the potential to target hundreds of transcripts within the cell thus controlling fundamental cellular processes such as survival and proliferation. Here, we exploit this important feature of miRNA networks to discover vulnerabilities in cancer phenotype, and map miRNA-target relationships across different cancer types. More specifically, we report the results of a functional genomics screen of 1280 miRNA mimics and inhibitors in eight cancer cell lines, and its presentation in a sophisticated interactive data portal. This resource represents the most comprehensive survey of miRNA function in oncology, incorporating breast cancer, prostate cancer and neuroblastoma. A user-friendly web portal couples this experimental data with multiple tools for miRNA target prediction, pathway enrichment analysis and visualization. In addition, the database integrates publicly available gene expression and perturbation data enabling tailored and context-specific analysis of miRNA function in a particular disease. As a proof-of-principle, we use the database and its innovative features to uncover novel determinants of the neuroblastoma malignant phenotype. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  14. Commentary: discovering a different model of medical student education.

    PubMed

    Watson, Robert T

    2012-12-01

    Traditional medical schools in modern academic health centers make discoveries, create new knowledge and technology, provide innovative care to the sickest patients, and educate future academic and practicing physicians. Unfortunately, the growth of the research and clinical care missions has sometimes resulted in a loss of emphasis on the general professional education of medical students. The author concludes that it may not be practical for many established medical schools to functionally return to the reason they were created: for the education of medical students.He had the opportunity to discover a different model of medical student education at the first new MD-granting medical school created in the United States in 25 years (in 2000), the Florida State University College of Medicine. He was initially skeptical about how its distributed regional campuses model, using practicing primary care physicians to help medical students learn in mainly ambulatory settings, could be effective. But his experience as a faculty member at the school convinced him that the model works very well.He proposes a better alignment of form and function for many established medical schools and an extension of the regional community-based model to the formation of community-based primary care graduate medical education programs determined by physician workforce needs and available resources.

  15. The Scientific Work of John A. McClelland: A Recently Discovered Manuscript

    NASA Astrophysics Data System (ADS)

    O'Connor, Thomas

    2010-09-01

    John Alexander McClelland (1870-1920) was educated at Queen’s College Galway and the Cavendish Laboratory in Cambridge. He was Professor of Experimental Physics at University College Dublin from 1900 to 1920. He was best known for his pioneering work on the scattering of β rays and on the conductivity of gases and the mobility of ions. He established a research school on atmospheric aerosols that was continued by his successor, John James Nolan (1887-1952), which strongly influenced physics research in Ireland up to the present. A recently discovered manuscript of a commemorative address by Nolan in 1920, which is reproduced in Appendix I, is a unique contemporary summary of McClelland’s research and character, and is an important contribution to the history of experimental physics in Ireland.

  16. THE MOST LUMINOUS GALAXIES DISCOVERED BY WISE

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Tsai, Chao-Wei; Eisenhardt, Peter R. M.; Stern, Daniel

    2015-06-01

    We present 20 Wide-field Infrared Survey Explorer (WISE)-selected galaxies with bolometric luminosities L{sub bol} > 10{sup 14} L{sub ☉}, including five with infrared luminosities L{sub IR} ≡ L{sub (rest} {sub 8–1000} {sub μm)} > 10{sup 14} L{sub ☉}. These “extremely luminous infrared galaxies,” or ELIRGs, were discovered using the “W1W2-dropout” selection criteria which requires marginal or non-detections at 3.4 and 4.6 μm (W1 and W2, respectively) but strong detections at 12 and 22 μm in the WISE survey. Their spectral energy distributions are dominated by emission at rest-frame 4–10 μm, suggesting that hot dust with T{sub d} ∼ 450 Kmore » is responsible for the high luminosities. These galaxies are likely powered by highly obscured active galactic nuclei (AGNs), and there is no evidence suggesting these systems are beamed or lensed. We compare this WISE-selected sample with 116 optically selected quasars that reach the same L{sub bol} level, corresponding to the most luminous unobscured quasars in the literature. We find that the rest-frame 5.8 and 7.8 μm luminosities of the WISE-selected ELIRGs can be 30%–80% higher than that of the unobscured quasars. The existence of AGNs with L{sub bol} > 10{sup 14} L{sub ☉} at z > 3 suggests that these supermassive black holes are born with large mass, or have very rapid mass assembly. For black hole seed masses ∼10{sup 3} M{sub ☉}, either sustained super-Eddington accretion is needed, or the radiative efficiency must be <15%, implying a black hole with slow spin, possibly due to chaotic accretion.« less

  17. Anatomy and histology of the newly discovered adipose sac structure within the labia majora: international original research.

    PubMed

    Ostrzenski, Adam; Krajewski, Pawel; Davis, Kern

    2016-09-01

    To determine whether there is any new anatomical structure present within the labia majora. A case serial study was executed on eleven consecutive fresh human female cadavers. Stratum-by-stratum dissections of the labia majora were performed. Twenty-two anatomic dissections of labia majora were completed. Eosin and Hematoxylin agents were used to stain newly discovered adipose sac's tissues of the labia majora and the cylinder-like structures, which cover condensed adipose tissues. The histology of these two structures was compared. All dissected labia majora demonstrated the presence of the anatomic existence of the adipose sac structure. Just under the dermis of the labia majora, the adipose sac was located, which was filled with lobules containing condensed fatty tissues in the form of cylinders. The histological investigation established that the well-organized fibro-connective-adipose tissues represented the adipose sac. The absence of descriptions of the adipose sac within the labia majora in traditional anatomic and gynecologic textbooks was noted. In this study group, the newly discovered adipose sac is consistently present within the anatomical structure of the labia majora. The well-organized fibro-connective-adipose tissue represents microscopic characteristic features of the adipose sac.

  18. ADVANCES IN DISCOVERING SMALL MOLECULES TO PROBE PROTEIN FUNCTION IN A SYSTEMS CONTEXT

    PubMed Central

    Doyle, Shelby K; Pop, Marius S; Evans, Helen L; Koehler, Angela N

    2015-01-01

    High throughput screening has historically been used for drug discovery almost exclusively by the pharmaceutical industry. Due to a significant decrease in costs associated with establishing a high throughput facility and an exponential interest in discovering probes of development and disease associated biomolecules, HTS core facilities have become an integral part of most academic and non-profit research institutions over the past decade. This major shift has led to the development of new HTS methodologies extending beyond the capabilities and target classes used in classical drug discovery approaches such as traditional enzymatic activity-based screens. In this brief review we describe some of the most interesting developments in HTS technologies and methods for chemical probe discovery. PMID:26615565

  19. ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci

    PubMed Central

    2010-01-01

    Background Growing interest and burgeoning technology for discovering genetic mechanisms that influence disease processes have ushered in a flood of genetic association studies over the last decade, yet little heritability in highly studied complex traits has been explained by genetic variation. Non-additive gene-gene interactions, which are not often explored, are thought to be one source of this "missing" heritability. Methods Stochastic methods employing evolutionary algorithms have demonstrated promise in being able to detect and model gene-gene and gene-environment interactions that influence human traits. Here we demonstrate modifications to a neural network algorithm in ATHENA (the Analysis Tool for Heritable and Environmental Network Associations) resulting in clear performance improvements for discovering gene-gene interactions that influence human traits. We employed an alternative tree-based crossover, backpropagation for locally fitting neural network weights, and incorporation of domain knowledge obtainable from publicly accessible biological databases for initializing the search for gene-gene interactions. We tested these modifications in silico using simulated datasets. Results We show that the alternative tree-based crossover modification resulted in a modest increase in the sensitivity of the ATHENA algorithm for discovering gene-gene interactions. The performance increase was highly statistically significant when backpropagation was used to locally fit NN weights. We also demonstrate that using domain knowledge to initialize the search for gene-gene interactions results in a large performance increase, especially when the search space is larger than the search coverage. Conclusions We show that a hybrid optimization procedure, alternative crossover strategies, and incorporation of domain knowledge from publicly available biological databases can result in marked increases in sensitivity and performance of the ATHENA algorithm for detecting and

  20. Molecular evidence for an Asian origin and a unique westward migration of species in the genus Castanea via Europe to North America

    Treesearch

    Ping Lang; Fenny Dane; Thomas L. Kubisiak; Hongwen Huang

    2007-01-01

    The genus Castanea (Fagaceae) is widely distributed in the deciduous forests of the Northern Hemisphere. The striking similarity between the Xoras of eastern Asia and those of eastern North America and the divergence in chestnut blight resistance among species has been of interest to botanists for a century. To infer the biogeographical history of...

  1. A comparison of season of cambial growth in different geographic races of Pinus ponderosa

    Treesearch

    R. F. Daubenmire

    1950-01-01

    Ecotypic specialization in different parts of the ranges of widely distributed species is a phenomenon that has commanded the attention of botanists for several decades. Experience has usually shown that when plants are moved from their native habitat into a different environment they become subject to injuries from factors associated with the new environment, although...

  2. Making a Theist out of Darwin: Asa Gray's Post-Darwinian Natural Theology

    ERIC Educational Resources Information Center

    Hunter, T. Russell

    2012-01-01

    In March of 1860 the eminent Harvard Botanist and orthodox Christian Asa Gray began promoting the Origin of Species in hopes of securing a fair examination of Darwin's evolutionary theory among theistic naturalists. To this end, Gray sought to demonstrate that Darwin had not written atheistically and that his theory of evolution by natural…

  3. SEVEN NEW BINARIES DISCOVERED IN THE KEPLER LIGHT CURVES THROUGH THE BEER METHOD CONFIRMED BY RADIAL-VELOCITY OBSERVATIONS

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Faigler, S.; Mazeh, T.; Tal-Or, L.

    We present seven newly discovered non-eclipsing short-period binary systems with low-mass companions, identified by the recently introduced BEER algorithm, applied to the publicly available 138-day photometric light curves obtained by the Kepler mission. The detection is based on the beaming effect (sometimes called Doppler boosting), which increases (decreases) the brightness of any light source approaching (receding from) the observer, enabling a prediction of the stellar Doppler radial-velocity (RV) modulation from its precise photometry. The BEER algorithm identifies the BEaming periodic modulation, with a combination of the well-known Ellipsoidal and Reflection/heating periodic effects, induced by short-period companions. The seven detections weremore » confirmed by spectroscopic RV follow-up observations, indicating minimum secondary masses in the range 0.07-0.4 M{sub Sun }. The binaries discovered establish for the first time the feasibility of the BEER algorithm as a new detection method for short-period non-eclipsing binaries, with the potential to detect in the near future non-transiting brown-dwarf secondaries, or even massive planets.« less

  4. PALFA Discovers Neutron Stars on a Collision Course

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2018-03-01

    Got any plans in 46 million years? If not, you should keep an eye out for PSR J1946+2052 around that time this upcoming merger of two neutron stars promises to be an exciting show!Survey SuccessAverage profile for PSR J1946+2052 at 1.43 GHz from a 2 hr observation from the Arecibo Observatory. [Stovall et al. 2018]It seems like we just wrote about the dearth of known double-neutron-star systems, and about how new surveys are doing their best to find more of these compact binaries. Observing these systems improves our knowledge of how pairs of evolved stars behave before they eventually spiral in, merge, and emit gravitational waves that detectors like the Laser Interferometer Gravitational-wave Observatory might observe.Todays study, led by Kevin Stovall (National Radio Astronomy Observatory), goes to show that these surveys are doing a great job so far! Yet another double-neutron-star binary, PSR J1946+2052, has now been discovered as part of the Arecibo L-Band Feed Array pulsar (PALFA) survey. This one is especially unique due to the incredible speed with which these neutron stars orbit each other and their correspondingly (relatively!) short timescale for merger.An Extreme ExampleThe PALFA survey, conducted with the enormous 305-meter radio dish at Arecibo, has thus far resulted in the discovery of 180 pulsars including two double-neutron-star systems. The most recent discovery by Stovall and collaborators brings that number up to three, for a grand total of 16 binary-neutron-star systems (confirmed and unconfirmed) known to date.The 305-m Arecibo Radio Telescope, built into the landscape at Arecibo, Puerto Rico. [NOAO/AURA/NSF/H. Schweiker/WIYN]The newest binary in this collection, PSR J1946+2052, exhibits a pulsar with a 17-millisecond spin period thatwhips around its compact companion at a terrifying rate: the binary period is just 1.88 hours. Follow-up observations with the Jansky Very Large Array and other telescopes allowed the team to identify the binarys

  5. A Transport Analysis of In Situ Airborne Ozone Measurements from the 2011 DISCOVER-AQ Campaign

    NASA Astrophysics Data System (ADS)

    Arkinson, H. L.; Brent, L. C.; He, H.; Loughner, C.; Stehr, J. W.; Weinheimer, A. J.; Dickerson, R. R.

    2013-12-01

    Baltimore and Washington are currently designated as nonattainment areas with respect to the 2008 EPA National Ambient Air Quality Standard (NAAQS) for 8-hour Ozone (O3). Tropospheric O3 is the dominant component of summertime photochemical smog, and at high levels, has deleterious effects on human health, ecosystems, and materials. The University of Maryland (UMD) Regional Atmospheric Measurement Modeling and Prediction Program (RAMMPP) strives to improve understanding of air quality in the Mid-Atlantic States and to elucidate contributions of pollutants such as O3 from regional transport versus local sources through a combination of modeling and in situ measurements. The NASA Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality (DISCOVER-AQ) project investigates the connection between column measurements and surface conditions to explore the potential of remote sensing observations in diagnosing air quality at ground level where pollutants can affect human health. During the 2011 DISCOVER-AQ field campaign, in situ airborne measurements of trace gases and aerosols were performed along the Interstate 95 corridor between Baltimore and Washington from the NASA P3B aircraft. To augment this data and provide regional context, measurements of trace gases and aerosols were also performed by the RAMMPP Cessna 402B aircraft over nearby airports in Maryland and Virginia. This work presents an analysis of O3 measurements made by the Ultraviolet (UV) Photometric Ambient O3 Analyzer on the RAMMPP Cessna 402B and by the NCAR 4-Channel Chemiluminescence instrument on the NASA P3B. In this analysis, spatial and temporal patterns of O3 data are examined within the context of forward and backward trajectories calculated from 12-km North American Mesoscale (NAM) meteorological data using the NOAA Hybrid Single Particle Lagrangian Integrated Trajectory (HYSPLIT) Model and from a high resolution Weather Research and

  6. Discovering Extrasolar Planets with Microlensing Surveys

    NASA Astrophysics Data System (ADS)

    Wambsganss, J.

    2016-06-01

    An astronomical survey is commonly understood as a mapping of a large region of the sky, either photometrically (possibly in various filters/wavelength ranges) or spectroscopically. Often, catalogs of objects are produced/provided as the main product or a by-product. However, with the advent of large CCD cameras and dedicated telescopes with wide-field imaging capabilities, it became possible in the early 1990s, to map the same region of the sky over and over again. In principle, such data sets could be combined to get very deep stacked images of the regions of interest. However, I will report on a completely different use of such repeated maps: Exploring the time domain for particular kinds of stellar variability, namely microlens-induced magnifications in search of exoplanets. Such a time-domain microlensing survey was originally proposed by Bohdan Paczynski in 1986 in order to search for dark matter objects in the Galactic halo. Only a few years later three teams started this endeavour. I will report on the history and current state of gravitational microlensing surveys. By now, routinely 100 million stars in the Galactic Bulge are monitored a few times per week by so-called survey teams. All stars with constant apparent brightness and those following known variability patterns are filtered out in order to detect the roughly 2000 microlensing events per year which are produced by stellar lenses. These microlensing events are identified "online" while still in their early phases and then monitored with much higher cadence by so-called follow-up teams. The most interesting of such events are those produced by a star-plus-planet lens. By now of order 30 exoplanets have been discovered by these combined microlensing surveys. Microlensing searches for extrasolar planets are complementary to other exoplanet search techniques. There are two particular advantages: The microlensing method is sensitive down to Earth-mass planets even with ground-based telecopes, and it

  7. Network biology discovers pathogen contact points in host protein-protein interactomes.

    PubMed

    Ahmed, Hadia; Howton, T C; Sun, Yali; Weinberger, Natascha; Belkhadir, Youssef; Mukhtar, M Shahid

    2018-06-13

    In all organisms, major biological processes are controlled by complex protein-protein interactions networks (interactomes), yet their structural complexity presents major analytical challenges. Here, we integrate a compendium of over 4300 phenotypes with Arabidopsis interactome (AI-1 MAIN ). We show that nodes with high connectivity and betweenness are enriched and depleted in conditional and essential phenotypes, respectively. Such nodes are located in the innermost layers of AI-1 MAIN and are preferential targets of pathogen effectors. We extend these network-centric analyses to Cell Surface Interactome (CSI LRR ) and predict its 35 most influential nodes. To determine their biological relevance, we show that these proteins physically interact with pathogen effectors and modulate plant immunity. Overall, our findings contrast with centrality-lethality rule, discover fast information spreading nodes, and highlight the structural properties of pathogen targets in two different interactomes. Finally, this theoretical framework could possibly be applicable to other inter-species interactomes to reveal pathogen contact points.

  8. Discovering Collaboration and Knowledge Management Practices for the Future Digital Factory

    NASA Astrophysics Data System (ADS)

    Flores, Myrna; Vera, Tomas; Tucci, Christopher

    Recently there has been an explosion of new technologies and tools such as wikis, blogs, tags, Facebook, among many others, that are commonly identified under Web 2.0 and which promise a new digital business ecosystem fed by formal/informal and internal/external relationships and interactions. Although Web 2.0 is very promising to enable such collective knowledge creation, technology by itself is not the only ingredient. It is also required to define the right strategy, governance, culture, processes, training, incentives among others, before implementing such innovative open spaces for collaboration and knowledge sharing. Therefore, the objective of this paper is to present a Knowledge Management (KM) Framework and a Maturity Model developed by a CEMEX and EPFL collaborative research project to discover the AS-IS collaboration practices in CEMEX before the implementation of the SMARTBRICKS Web 2.0 prototype for Business Process Management (BPM), currently under development by the Intelligent Manufacturing Systems (IMS) Swiss Digital Factory (DiFac) project.

  9. Newly discovered ebola virus associated with hemorrhagic fever outbreak in Uganda.

    PubMed

    Towner, Jonathan S; Sealy, Tara K; Khristova, Marina L; Albariño, César G; Conlan, Sean; Reeder, Serena A; Quan, Phenix-Lan; Lipkin, W Ian; Downing, Robert; Tappero, Jordan W; Okware, Samuel; Lutwama, Julius; Bakamutumaho, Barnabas; Kayiwa, John; Comer, James A; Rollin, Pierre E; Ksiazek, Thomas G; Nichol, Stuart T

    2008-11-01

    Over the past 30 years, Zaire and Sudan ebolaviruses have been responsible for large hemorrhagic fever (HF) outbreaks with case fatalities ranging from 53% to 90%, while a third species, Côte d'Ivoire ebolavirus, caused a single non-fatal HF case. In November 2007, HF cases were reported in Bundibugyo District, Western Uganda. Laboratory investigation of the initial 29 suspect-case blood specimens by classic methods (antigen capture, IgM and IgG ELISA) and a recently developed random-primed pyrosequencing approach quickly identified this to be an Ebola HF outbreak associated with a newly discovered ebolavirus species (Bundibugyo ebolavirus) distantly related to the Côte d'Ivoire ebolavirus found in western Africa. Due to the sequence divergence of this new virus relative to all previously recognized ebolaviruses, these findings have important implications for design of future diagnostic assays to monitor Ebola HF disease in humans and animals, and ongoing efforts to develop effective antivirals and vaccines.

  10. Discovering spatio-temporal models of the spread of West Nile virus.

    PubMed

    Orme-Zavaleta, Jennifer; Jorgensen, Jane; D'Ambrosio, Bruce; Altendorf, Eric; Rossignol, Philippe A

    2006-04-01

    Emerging infectious diseases are characterized by complex interactions among disease agents, vectors, wildlife, humans, and the environment. Since the appearance of West Nile virus (WNV) in New York City in 1999, it has infected over 8,000 people in the United States, resulting in several hundred deaths in 46 contiguous states. The virus is transmitted by mosquitoes and maintained in various bird reservoir hosts. Its unexpected introduction, high morbidity, and rapid spread have left public health agencies facing severe time constraints in a theory-poor environment, dependent largely on observational data collected by independent survey efforts and much uncertainty. Current knowledge may be expressed as a priori constraints on models learned from data. Accordingly, we applied a Bayesian probabilistic relational approach to generate spatially and temporally linked models from heterogeneous data sources. Using data collected from multiple independent sources in Maryland, we discovered the integrated context in which infected birds are plausible indicators for positive mosquito pools and human cases for 2001 and 2002.

  11. Newly Discovered Ebola Virus Associated with Hemorrhagic Fever Outbreak in Uganda

    PubMed Central

    Towner, Jonathan S.; Sealy, Tara K.; Khristova, Marina L.; Albariño, César G.; Conlan, Sean; Reeder, Serena A.; Quan, Phenix-Lan; Lipkin, W. Ian; Downing, Robert; Tappero, Jordan W.; Okware, Samuel; Lutwama, Julius; Bakamutumaho, Barnabas; Kayiwa, John; Comer, James A.; Rollin, Pierre E.; Ksiazek, Thomas G.; Nichol, Stuart T.

    2008-01-01

    Over the past 30 years, Zaire and Sudan ebolaviruses have been responsible for large hemorrhagic fever (HF) outbreaks with case fatalities ranging from 53% to 90%, while a third species, Côte d'Ivoire ebolavirus, caused a single non-fatal HF case. In November 2007, HF cases were reported in Bundibugyo District, Western Uganda. Laboratory investigation of the initial 29 suspect-case blood specimens by classic methods (antigen capture, IgM and IgG ELISA) and a recently developed random-primed pyrosequencing approach quickly identified this to be an Ebola HF outbreak associated with a newly discovered ebolavirus species (Bundibugyo ebolavirus) distantly related to the Côte d'Ivoire ebolavirus found in western Africa. Due to the sequence divergence of this new virus relative to all previously recognized ebolaviruses, these findings have important implications for design of future diagnostic assays to monitor Ebola HF disease in humans and animals, and ongoing efforts to develop effective antivirals and vaccines. PMID:19023410

  12. The Revolution Continues: Newly Discovered Systems Expand the CRISPR-Cas Toolkit.

    PubMed

    Murugan, Karthik; Babu, Kesavan; Sundaresan, Ramya; Rajan, Rakhi; Sashital, Dipali G

    2017-10-05

    CRISPR-Cas systems defend prokaryotes against bacteriophages and mobile genetic elements and serve as the basis for revolutionary tools for genetic engineering. Class 2 CRISPR-Cas systems use single Cas endonucleases paired with guide RNAs to cleave complementary nucleic acid targets, enabling programmable sequence-specific targeting with minimal machinery. Recent discoveries of previously unidentified CRISPR-Cas systems have uncovered a deep reservoir of potential biotechnological tools beyond the well-characterized Type II Cas9 systems. Here we review the current mechanistic understanding of newly discovered single-protein Cas endonucleases. Comparison of these Cas effectors reveals substantial mechanistic diversity, underscoring the phylogenetic divergence of related CRISPR-Cas systems. This diversity has enabled further expansion of CRISPR-Cas biotechnological toolkits, with wide-ranging applications from genome editing to diagnostic tools based on various Cas endonuclease activities. These advances highlight the exciting prospects for future tools based on the continually expanding set of CRISPR-Cas systems. Copyright © 2017 Elsevier Inc. All rights reserved.

  13. The Essential Role of Tethered Balloons in Characterizing Boundary Layer Structure and Evolution during Discover-AQ

    NASA Astrophysics Data System (ADS)

    Clark, R. D.

    2014-12-01

    The NASA DISCOVER-AQ (Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality) provided the opportunity to observe the influence of local and regional circulations on the structure and evolution of the boundary layer (BL) and in turn study the associated effects on air quality and aerosol trends within four different airsheds. An extended network of ground-based instruments, balloon-borne profilers, and remote sensing instruments supported the in-situ airborne measurements made by the NASA aircraft in capturing the structure and evolution of the daytime BL. The Millersville University Atmospheric Research and Aerostat Facility (MARAF) is one of many assets deployed for DISCOVER-AQ. Central to MARAF is a heavy-lift-capacity tethered balloon (aerostat) used to obtain high resolution profiles of meteorological variables, trace gases, and particulates in the BL. The benefit of including a tethered balloon is that it can fill a data void between the surface and the lowest altitudes flown by the aircraft and provide critical time-height series for ground-based remote sensing instruments in the layer below their first range gate. MARAF also includes an acoustic sodar with RASS, MPL4 micropulse Lidar, 4-meter flux tower, rawinsonde system, and a suite of trace gas analyzers (O3, NOx/NO2/NO, CO, and SO2), 3-wavelength nephelometer, and particle sizers/counters spanning the range from 10 nm to 10 microns. MARAF is capable of providing a detailed and nearly continuous Eulerian characterization of the surface layer and lower BL, and with proper FAA airspace authorization, can be deployed both day and night. Three case studies will be presented that incorporate the MARAF into the combined assets of DISCOVER-AQ to better characterize: 1) bay breeze convergence, recirculation, and ramp-up events in Edgewood, MD in July 2011; 2) aerosol transport over Central Valley, CA in January 2013; and 3) multiple sea-bay breeze

  14. Discovering the Role of Grain Boundary Complexions in Materials

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Harmer, Martin P.

    complexion in a range of materials systems, and to characterize their structures, range of stability and selected physical properties. First, an Au-based bilayer interfacial phase was discovered at a bicrystal boundary in the Si-Au system. This bilayer transitioned abruptly to an intrinsic (“clean”) grain boundary phase, suggesting first-order phase behavior. This study represents the discovery of grain boundary complexions in a completely new system, i.e., a semiconductor-metal system, giving further support to the expectation that grain boundary complexions are a general phenomenon not limited to any particular class of materials. The TiO 2-CuO system exhibited four grain boundary interfacial phases: a monolayer, disordered bilayer, disordered trilayer, and non-wetting nanoscale amorphous drop (which likely resulted from dewetting of a nanoscale IGF). SiO 2 contamination was discovered in the TiO 2-CuO samples, and we hypothesize that this impurity may have caused an “order-disorder” transition to occur. In other words, we expect that pure TiO 2-CuO may have a higher tendency to exhibit ordered bilayer and trilayer complexions, which may also exhibit a well-defined order-disorder transition temperature. In this effort we have also identified unique complexion transitions in yttria and strontium titanate.« less

  15. VLA Discovers Giant Rings Around Galaxy Cluster

    NASA Astrophysics Data System (ADS)

    2006-11-01

    Astronomers using the National Science Foundation's Very Large Array (VLA) radio telescope have discovered giant, ring-like structures around a cluster of galaxies. The discovery provides tantalizing new information about how such galaxy clusters are assembled, about magnetic fields in the vast spaces between galaxy clusters, and possibly about the origin of cosmic rays. Radio-Optical Image of Cluster Galaxy Cluster Abell 3376 (Radio/Optical) CREDIT: Joydeep Bagchi, IUCAA, NRAO/AUI/NSF Above, a combined radio/optical image shows the galaxy cluster Abell 3376 in visible light (blue) and radio (red) images. The giant radio arcs surrounding the cluster were discovered using the Very Large Array. The visible-light image is from the Digitized Sky survey. Below, an X-ray image of Abell 3376 made using the European Space Agency's XMM-Newton telescope shows a spectacular, bullet-shaped region of X-rays coming from gas heated to 60 million degrees Kelvin. The bullet shape results from the supersonic collision of a smaller smaller galaxy subcluster with the main body of the larger cluster. Click on images for larger version. X-Ray Image of Cluster Galaxy Cluster Abell 3376 (X-Ray) CREDIT: Joydeep Bagchi, IUCAA, ESA "These giant, radio-emitting rings probably are the result of shock waves caused by violent collisions of smaller groups of galaxies within the cluster," said Joydeep Bagchi, of the Inter-University Centre for Astronomy and Astrophysics in Pune, India, who led an international research team. The scientists reported their findings in the November 3 edition of the journal Science. The newly-discovered ring segments, some 6 million light-years across, surround a galaxy cluster called Abell 3376, more than 600 million light-years from Earth. They were revealed because fast-moving electrons emitted radio waves as they spiraled around magnetic field lines in intergalactic space. "Even from this large distance, the feeble radio waves were easily picked up by the VLA

  16. Searching for Dark Matter annihilation in recently discovered Milky Way satellites with FERMI-LAT

    DOE PAGES

    Albert, A.; Anderson, B.; Bechtol, K.; ...

    2017-01-06

    Here, we search for excess γ-ray emission coincident with the positions of confirmed and candidate Milky Way satellite galaxies using six years of data from the Fermi Large Area Telescope (LAT). Our sample of 45 stellar systems includes 28 kinematically confirmed dark-matter-dominated dwarf spheroidal galaxies (dSphs) and 17 recently discovered systems that have photometric characteristics consistent with the population of known dSphs. For each of these targets, the relative predicted γ-ray flux due to dark matter annihilation is taken from kinematic analysis if available, and estimated from a distance-based scaling relation otherwise, assuming that the stellar systems are DM-dominated dSphs. LAT data coincident with four of the newly discovered targets show a slight preference (eachmore » $$\\sim $$2σ local) for γ-ray emission in excess of the background. However, the ensemble of derived γ-ray flux upper limits for individual targets is consistent with the expectation from analyzing random blank-sky regions, and a combined analysis of the population of stellar systems yields no globally significant excess (global significance $$\\lt 1\\sigma $$). Our analysis has increased sensitivity compared to the analysis of 15 confirmed dSphs by Ackermann et al. The observed constraints on the DM annihilation cross section are statistically consistent with the background expectation, improving by a factor of ~2 for large DM masses ($${m}_{\\mathrm{DM},b\\bar{b}}\\gtrsim 1\\,\\mathrm{TeV}$$ and $${m}_{\\mathrm{DM},{\\tau }^{+}{\\tau }^{-}}\\gtrsim 70\\,\\mathrm{GeV}$$) and weakening by a factor of ~1.5 at lower masses relative to previously observed limits.« less

  17. Searching for Dark Matter annihilation in recently discovered Milky Way satellites with FERMI-LAT

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Albert, A.; Anderson, B.; Bechtol, K.

    Here, we search for excess γ-ray emission coincident with the positions of confirmed and candidate Milky Way satellite galaxies using six years of data from the Fermi Large Area Telescope (LAT). Our sample of 45 stellar systems includes 28 kinematically confirmed dark-matter-dominated dwarf spheroidal galaxies (dSphs) and 17 recently discovered systems that have photometric characteristics consistent with the population of known dSphs. For each of these targets, the relative predicted γ-ray flux due to dark matter annihilation is taken from kinematic analysis if available, and estimated from a distance-based scaling relation otherwise, assuming that the stellar systems are DM-dominated dSphs. LAT data coincident with four of the newly discovered targets show a slight preference (eachmore » $$\\sim $$2σ local) for γ-ray emission in excess of the background. However, the ensemble of derived γ-ray flux upper limits for individual targets is consistent with the expectation from analyzing random blank-sky regions, and a combined analysis of the population of stellar systems yields no globally significant excess (global significance $$\\lt 1\\sigma $$). Our analysis has increased sensitivity compared to the analysis of 15 confirmed dSphs by Ackermann et al. The observed constraints on the DM annihilation cross section are statistically consistent with the background expectation, improving by a factor of ~2 for large DM masses ($${m}_{\\mathrm{DM},b\\bar{b}}\\gtrsim 1\\,\\mathrm{TeV}$$ and $${m}_{\\mathrm{DM},{\\tau }^{+}{\\tau }^{-}}\\gtrsim 70\\,\\mathrm{GeV}$$) and weakening by a factor of ~1.5 at lower masses relative to previously observed limits.« less

  18. Discovering discovery patterns with Predication-based Semantic Indexing.

    PubMed

    Cohen, Trevor; Widdows, Dominic; Schvaneveldt, Roger W; Davies, Peter; Rindflesch, Thomas C

    2012-12-01

    In this paper we utilize methods of hyperdimensional computing to mediate the identification of therapeutically useful connections for the purpose of literature-based discovery. Our approach, named Predication-based Semantic Indexing, is utilized to identify empirically sequences of relationships known as "discovery patterns", such as "drug x INHIBITS substance y, substance y CAUSES disease z" that link pharmaceutical substances to diseases they are known to treat. These sequences are derived from semantic predications extracted from the biomedical literature by the SemRep system, and subsequently utilized to direct the search for known treatments for a held out set of diseases. Rapid and efficient inference is accomplished through the application of geometric operators in PSI space, allowing for both the derivation of discovery patterns from a large set of known TREATS relationships, and the application of these discovered patterns to constrain search for therapeutic relationships at scale. Our results include the rediscovery of discovery patterns that have been constructed manually by other authors in previous research, as well as the discovery of a set of previously unrecognized patterns. The application of these patterns to direct search through PSI space results in better recovery of therapeutic relationships than is accomplished with models based on distributional statistics alone. These results demonstrate the utility of efficient approximate inference in geometric space as a means to identify therapeutic relationships, suggesting a role of these methods in drug repurposing efforts. In addition, the results provide strong support for the utility of the discovery pattern approach pioneered by Hristovski and his colleagues. Copyright © 2012 Elsevier Inc. All rights reserved.

  19. Discovering discovery patterns with predication-based Semantic Indexing

    PubMed Central

    Cohen, Trevor; Widdows, Dominic; Schvaneveldt, Roger W.; Davies, Peter; Rindflesch, Thomas C.

    2012-01-01

    In this paper we utilize methods of hyperdimensional computing to mediate the identification of therapeutically useful connections for the purpose of literature-based discovery. Our approach, named Predication-based Semantic Indexing, is utilized to identify empirically sequences of relationships known as “discovery patterns”, such as “drug x INHIBITS substance y, substance y CAUSES disease z” that link pharmaceutical substances to diseases they are known to treat. These sequences are derived from semantic predications extracted from the biomedical literature by the SemRep system, and subsequently utilized to direct the search for known treatments for a held out set of diseases. Rapid and efficient inference is accomplished through the application of geometric operators in PSI space, allowing for both the derivation of discovery patterns from a large set of known TREATS relationships, and the application of these discovered patterns to constrain search for therapeutic relationships at scale. Our results include the rediscovery of discovery patterns that have been constructed manually by other authors in previous research, as well as the discovery of a set of previously unrecognized patterns. The application of these patterns to direct search through PSI space results in better recovery of therapeutic relationships than is accomplished with models based on distributional statistics alone. These results demonstrate the utility of efficient approximate inference in geometric space as a means to identify therapeutic relationships, suggesting a role of these methods in drug repurposing efforts. In addition, the results provide strong support for the utility of the discovery pattern approach pioneered by Hristovski and his colleagues. PMID:22841748

  20. Astronomers Discover Dizzying Spin of the Milky Way Galaxy’s “Halo”

    NASA Image and Video Library

    2017-12-08

    Our Milky Way galaxy and its small companions are surrounded by a giant halo of million-degree gas (seen in blue in this artists' rendition) that is only visible to X-ray telescopes in space. University of Michigan astronomers discovered that this massive hot halo spins in the same direction as the Milky Way disk and at a comparable speed. Read more: go.nasa.gov/29VgLdK Credit: NASA/CXC/M.Weiss/Ohio State/A Gupta et al NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  1. Basswood, linden, lime-tree,

    Treesearch

    John Zasada

    2003-01-01

    Tilia americana - to foresters, botanists, and ecologists around the world this name conjures up the picture of a very specific tree (Tilia in latin means linden tree so literally translated the scientific name means American linden). But what about basswood, linden, lime, and pu tee shu (Chinese for linden)? Common names are often confusing and may be different from...

  2. MAIDENHAIR TREE: Ginkgo biloba, ON THE HOUSE'S EAST SIDE LOOKING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    MAIDENHAIR TREE: Ginkgo biloba, ON THE HOUSE'S EAST SIDE LOOKING EAST. THIS TREE IS THE OLDEST DOCUMENTED AT BARTRAM'S GARDEN. WILLIAM HAMILTON, A NEIGHBOR AND ALSO A WELL-KNOWN BOTANIST, INTRODUCED THE GINGKO TO NORTH AMERICA IN 1785, IN PART THROUGH THIS GIFT TO THE BARTRAMS - John Bartram House & Garden, 54th Street & Lindbergh Boulevard, Philadelphia, Philadelphia County, PA

  3. Acid Rain - This cloud has no silver lining

    Treesearch

    Gail Michaels

    2000-01-01

    Twenty years ago, acid rain was the environmental cause du jour, a symptom of all that was wrong with humans and their relationship to the environment. Its discovery was accidental, ironic for what turned out to be such a wide-ranging problem. "Hub" Vogelman, a University of Vermont botanist, noticed something troubling in the precipitation data he and his...

  4. Northwest range-plant symbols adapted to automatic data processing.

    Treesearch

    George A. Garrison; Jon M. Skovlin

    1960-01-01

    Many range technicians, agronomists, foresters, biologists, and botanists of various educational institutions and government agencies in the Northwest have been using a four-letter symbol list or code compiled 12 years ago from records of plants collected by the U.S. Forest Service in Oregon and Washington, This code has served well as a means of entering plant names...

  5. A century of genetics

    Treesearch

    Daniel J. Fairbanks

    2001-01-01

    In 1866, Gregor Mendel published his experiments on heredity in the garden pea (Pisum sativum). The fundamental principles of inheritance derived from his work apply to nearly all eukaryotic species and are now known as Mendelian principles. Since 1900, Mendel has been recognized as the founder of genetics. In 1900, three botanists, Carl Correns, Hugo De Vries, and...

  6. Clinton, Peck and Frost -- The dawn of North American boletology

    Treesearch

    Ernst E. Both; Beatriz Ortiz-Santana

    2010-01-01

    George W. Clinton (a founder and first president of the Buffalo Society of Natural Sciences) launched the mycological career of Peck by obtaining for him the position of botanist of the New York State Cabinet of Natural History and he was responsible for the publication of Frost's "Boleti of New England." This paper discusses the interaction between Peck...

  7. The common plants of the muskegs of southeast Alaska.

    Treesearch

    O. Wayne Robuck

    1985-01-01

    This guide identifies 49 common plants of coastal Alaska muskegs. Plants are divided into six major groups: clubmosses, ferns, sedges, herbs, shrubs, and trees. Illustrations and short descriptions of each plant are provided, along with a simplified key to aid in identification. The guide has been prepared with the amateur botanist in mind, and technical terminology...

  8. Treatment patterns in moderate-to-severe plaque psoriasis: results from a Belgian cross-sectional study (DISCOVER).

    PubMed

    Lambert, Julien; Ghislain, Pierre-Dominique; Lambert, Jo; Cauwe, Bénédicte; Van den Enden, Maria

    2017-08-01

    The present study aimed to evaluate current treatment patterns and achievement of treatment goals in Belgian patients with moderate-to-severe plaque psoriasis. This cross-sectional observational study (DISCOVER) was conducted in 2011 - 2012 in Belgian dermatology centers. Patient data were collected during a single visit and included information on psoriasis management and severity (PASI and DLQI). Treatment success was defined according to the current European consensus treatment goal algorithm. Of the 556 patients included in the study, 38.1% reported no current treatment or only topicals, 34.2% were being treated with traditional systemics and/or phototherapy, and 29.5% with biologics. Methotrexate (11.7%) was the most commonly prescribed traditional systemic and adalimumab (14.2%) was the most commonly prescribed biologic agent at the time of the study. The percentage of patients achieving treatment goals was significantly higher in biologic-treated patients (73.1%) compared to those using traditional systemics (50.6%), phototherapy (41.1%), or no treatment/only topicals (20.9%; p < .001). Nearly 40% of Belgian patients with moderate-to-severe psoriasis in the DISCOVER study were undertreated despite the severity of their disease. Undertreatment of psoriasis remains a problem in Belgium and more effective educational strategies are needed to ensure the best treatment outcome for these patients. [Formula: see text].

  9. Discovering functional interdependence relationship in PPI networks for protein complex identification.

    PubMed

    Lam, Winnie W M; Chan, Keith C C

    2012-04-01

    Protein molecules interact with each other in protein complexes to perform many vital functions, and different computational techniques have been developed to identify protein complexes in protein-protein interaction (PPI) networks. These techniques are developed to search for subgraphs of high connectivity in PPI networks under the assumption that the proteins in a protein complex are highly interconnected. While these techniques have been shown to be quite effective, it is also possible that the matching rate between the protein complexes they discover and those that are previously determined experimentally be relatively low and the "false-alarm" rate can be relatively high. This is especially the case when the assumption of proteins in protein complexes being more highly interconnected be relatively invalid. To increase the matching rate and reduce the false-alarm rate, we have developed a technique that can work effectively without having to make this assumption. The name of the technique called protein complex identification by discovering functional interdependence (PCIFI) searches for protein complexes in PPI networks by taking into consideration both the functional interdependence relationship between protein molecules and the network topology of the network. The PCIFI works in several steps. The first step is to construct a multiple-function protein network graph by labeling each vertex with one or more of the molecular functions it performs. The second step is to filter out protein interactions between protein pairs that are not functionally interdependent of each other in the statistical sense. The third step is to make use of an information-theoretic measure to determine the strength of the functional interdependence between all remaining interacting protein pairs. Finally, the last step is to try to form protein complexes based on the measure of the strength of functional interdependence and the connectivity between proteins. For performance evaluation

  10. Asymptomatic tracheal MALT lymphoma discovered on spirometric findings presenting with elevated respiratory resistance.

    PubMed

    Kadota, Naoki; Shinohara, Tsutomu; Machida, Hisanori; Nakanishi, Hirofumi; Suehiro, Fumie; Toda, Hiroko; Yoshino, Tadashi; Ogushi, Fumitaka

    2015-06-06

    Central airway obstruction (CAO) may be caused by various etiologies. However, conventional chest X-rays are rarely diagnostic for patients with CAO. We here described a 64-year-old asymptomatic female with tracheal mucosa-associated lymphoid tissue lymphoma discovered on spirometric findings during a complete physical examination. The plateau of forced expiratory flow was consistent with CAO. A decreased peak expiratory flow rate was noted at least 3 years before the diagnosis, and was attributed to an insufficient effort by the patient. Impulse oscillometric measurements, which were taken during quiet breathing and were effort-independent, suggested elevated respiratory resistance. These abnormalities completely disappeared after radiation therapy. The addition of impulse oscillometry to spirometry may be useful for screening CAO in routine health examinations.

  11. Bilateral chorioretinal coloboma discovered with ultra-wide field retinal imaging

    PubMed Central

    Barnard, Simon; Shneor, Einat; Brauner, Joel; Millodot, Michel; Gordon-Shaag, Ariela

    2012-01-01

    Uveal coloboma results from incomplete closure of the optic cup fissure. While conducting an evaluation of a new ultra-wide field retinal imaging camera (Optomap), which provides a view of the fundus up to 200° at one time without mydriasis, we discovered a case of bilateral chorioretinal coloboma in a 21-year-old student. The lesion was located in the midperiphery of each eye less than 2 disc diameters (DD) below the optic disc in the inferonasal quadrants. The size of the coloboma in the right eye was 1.8 DD in height and 1.3 DD in width, while the left lesion was 2.4 DD in height and 2.6 DD in width. The subject was totally asymptomatic and without any complication such as retinal detachment or choroidal neovascularization, which often accompany this type of lesion. The visual field of each eye displayed an absolute scotoma corresponding to the size and location of the coloboma. No management was necessary but the subject was advised to report for visual examination at regular intervals because complications can occur at any age.

  12. Association genetics of growth and adaptive traits in loblolly pine (Pinus taeda L.) using whole-exome-discovered polymorphisms

    Treesearch

    Mengmeng Lu; Konstantin V. Krutovsky; C. Dana Nelson; Jason B. West; Nathalie A. Reilly; Carol A. Loopstra

    2017-01-01

    In the USA, forest genetics research began over 100 years ago and loblolly pine breeding programs were established in the 1950s. However, the genetics underlying complex traits of loblolly pine remains to be discovered. To address this, adaptive and growth traits were measured and analyzed in a clonally tested loblolly pine (Pinus taeda L.) population. Over 2.8 million...

  13. Discovering Tau and Muon Solar Neutrino Flares above Backgrounds

    NASA Astrophysics Data System (ADS)

    Fargion, D.; Moscato, F.

    2005-01-01

    Solar neutrino flares astronomy is at the edge of its discover. High energy flare particles (protons, alpha) whose self scattering within the solar corona is source of a rich prompt charged pions are also source of sharp solar neutrino "burst" (at tens-hundred MeV) produced by their pion-muon primary decay in flight. This brief (minute) solar neutrino "burst" at largest peak overcome by four-five order of magnitude the steady atmospheric neutrino noise at the Earth. Later on, solar flare particles hitting the terrestrial atmosphere may marginally increase the atmospheric neutrino flux without relevant consequences. Largest prompt "burst" solar neutrino flare may be detected in present or better in future largest neutrino underground neutrino detectors. Our estimate for the recent and exceptional October - November 2003 solar flares gives a number of events above or just near unity for Super-Kamiokande. The neutrino spectra may reflect in a subtle way the neutrino flavour mixing in flight. A surprising tau appearance may even occur for a hard ({E}_{nu}_{mu}--> {E}_{nu}_{tau} > 4 GeV) flare spectra. A comparison of the solar neutrino flare (at their birth place on Sun and after oscillation on the arrival on the Earth) with other neutrino foreground is here described and it offer an independent road map to disentangle the neutrino flavour puzzles and its secret flavour mixing angles .

  14. Unified Photo Enhancement by Discovering Aesthetic Communities From Flickr.

    PubMed

    Hong, Richang; Zhang, Luming; Tao, Dacheng

    2016-03-01

    Photo enhancement refers to the process of increasing the aesthetic appeal of a photo, such as changing the photo aspect ratio and spatial recomposition. It is a widely used technique in the printing industry, graphic design, and cinematography. In this paper, we propose a unified and socially aware photo enhancement framework which can leverage the experience of photographers with various aesthetic topics (e.g., portrait and landscape). We focus on photos from the image hosting site Flickr, which has 87 million users and to which more than 3.5 million photos are uploaded daily. First, a tagwise regularized topic model is proposed to describe the aesthetic topic of each Flickr user, and coherent and interpretable topics are discovered by leveraging both the visual features and tags of photos. Next, a graph is constructed to describe the similarities in aesthetic topics between the users. Noticeably, densely connected users have similar aesthetic topics, which are categorized into different communities by a dense subgraph mining algorithm. Finally, a probabilistic model is exploited to enhance the aesthetic attractiveness of a test photo by leveraging the photographic experiences of Flickr users from the corresponding communities of that photo. Paired-comparison-based user studies show that our method performs competitively on photo retargeting and recomposition. Moreover, our approach accurately detects aesthetic communities in a photo set crawled from nearly 100000 Flickr users.

  15. Characterizing and Discovering Spatiotemporal Social Contact Patterns for Healthcare.

    PubMed

    Yang, Bo; Pei, Hongbin; Chen, Hechang; Liu, Jiming; Xia, Shang

    2017-08-01

    During an epidemic, the spatial, temporal and demographic patterns of disease transmission are determined by multiple factors. In addition to the physiological properties of the pathogens and hosts, the social contact of the host population, which characterizes the reciprocal exposures of individuals to infection according to their demographic structure and various social activities, are also pivotal to understanding and predicting the prevalence of infectious diseases. How social contact is measured will affect the extent to which we can forecast the dynamics of infections in the real world. Most current work focuses on modeling the spatial patterns of static social contact. In this work, we use a novel perspective to address the problem of how to characterize and measure dynamic social contact during an epidemic. We propose an epidemic-model-based tensor deconvolution framework in which the spatiotemporal patterns of social contact are represented by the factors of the tensors. These factors can be discovered using a tensor deconvolution procedure with the integration of epidemic models based on rich types of data, mainly heterogeneous outbreak surveillance data, socio-demographic census data and physiological data from medical reports. Using reproduction models that include SIR/SIS/SEIR/SEIS models as case studies, the efficacy and applications of the proposed framework are theoretically analyzed, empirically validated and demonstrated through a set of rigorous experiments using both synthetic and real-world data.

  16. Inner solar system material discovered in the Oort cloud.

    PubMed

    Meech, Karen J; Yang, Bin; Kleyna, Jan; Hainaut, Olivier R; Berdyugina, Svetlana; Keane, Jacqueline V; Micheli, Marco; Morbidelli, Alessandro; Wainscoat, Richard J

    2016-04-01

    We have observed C/2014 S3 (PANSTARRS), a recently discovered object on a cometary orbit coming from the Oort cloud that is physically similar to an inner main belt rocky S-type asteroid. Recent dynamical models successfully reproduce the key characteristics of our current solar system; some of these models require significant migration of the giant planets, whereas others do not. These models provide different predictions on the presence of rocky material expelled from the inner solar system in the Oort cloud. C/2014 S3 could be the key to verifying these predictions of the migration-based dynamical models. Furthermore, this object displays a very faint, weak level of comet-like activity, five to six orders of magnitude less than that of typical ice-rich comets on similar Orbits coming from the Oort cloud. For the nearly tailless appearance, we are calling C/2014 S3 a Manx object. Various arguments convince us that this activity is produced by sublimation of volatile ice, that is, normal cometary activity. The activity implies that C/2014 S3 has retained a tiny fraction of the water that is expected to be present at its formation distance in the inner solar system. We may be looking at fresh inner solar system Earth-forming material that was ejected from the inner solar system and preserved for billions of years in the Oort cloud.

  17. Determining Boundary Layer Mixing State based on NASA DISCOVER-AQ Airborne Soundings over the Baltimore/Washington Area

    NASA Astrophysics Data System (ADS)

    Chen, G.; Crawford, J. H.; Silverman, M. L.; Anderson, B. E.; Barrick, J. D.; Diskin, G. S.; Fried, A.; Yang, M. M.; Weinheimer, A. J.; Lenschow, D. H.

    2012-12-01

    The DISCOVER-AQ (Deriving Information on Surface Conditions from Column and Vertically Resolved Observations Relevant to Air Quality) mission conducted its first field deployment in the Washington D.C./Baltimore region during July 2011. The overarching goal is to better understand how remotely-sensed column measurements can be used to diagnose near-surface air quality. To achieve this objective, the DISCOVER-AQ sampling strategy requires extensive probing of the vertical structure of the lower troposphere as it relates to both trace gases and aerosols. This strategy was implemented by using the NASA P-3B aircraft to spiral from 0.3 to ~3 km over 6 MDE (Maryland Department of the Environment) ground monitoring sites. A total of 254 spirals were flown which generated detailed vertical distributions for a large variety of trace gases, aerosol properties, and meteorological variables. This data set allows a detailed assessment of vertical mixing state, which can be estimated by the changes of the measured variables with height within the boundary layer. The data set was further filtered to minimize the influence of the horizontal inhomogeneity. To be presented are cases under different atmospheric stability classes to show the actual observed atmospheric structure and vertical distributions of the aerosols and trace gases which have a wide range of lifetimes.

  18. Statistical Investigation and Modeling of Sungrazing Comets Discovered with the Solar and Heliospheric Observatory

    NASA Astrophysics Data System (ADS)

    Sekanina, Zdenek

    2002-02-01

    More than 300 sungrazing comets, most of them discovered with the Solar and Heliospheric Observatory (SOHO) coronagraphs since the beginning of 1996, are known to belong to the Kreutz group or system. Moving about the Sun in similar orbits, they are of indisputably common parentage and represent by far the most extensive data set in the history of investigations of cometary splitting. This study compares the SOHO sungrazers, which always disappear during their approach to the Sun, with the sungrazers detected earlier with the other space-borne coronagraphs (Solwind and Solar Maximum Mission [SMM]) as well as with the bright members of the Kreutz system, discovered from the ground between 1843 and 1970. Collected, summarized, and reviewed information on the sungrazers' light curves indicates that there is a difference of 20 mag (a factor of 108 in brightness) between the brightest sungrazer, C/1882 R1, and the faintest objects detectable with the SOHO instruments. The headless comet C/1887 B1 is suggested to be a transition object between the bright sungrazers and the coronagraphically discovered ones: its physical behavior was similar to that of the latter comets, but it survived the perihelion passage. This study also (1) examines temporal and spatial distributions of the SOHO sungrazers; (2) depicts correlations among their orbital elements; (3) distinguishes among tidally triggered, post-tidal, and terminal fragmentation; (4) reiterates the conclusion made in an earlier paper that post-tidal, secondary fragmentation events are occurring throughout the orbit, including the region of aphelion; (5) determines the relationship between a breakup's location in the orbit and the perturbations of the orbital elements of a fragment caused by the momentum it acquires during the separation from the parent; (6) shows that collisions of the Kreutz system comets with the Sun are clearly possible; (7) finds that minor fragments acquire enough extra momentum during each of the

  19. Talkoot Portals: Discover, Tag, Share, and Reuse Collaborative Science Workflows

    NASA Astrophysics Data System (ADS)

    Wilson, B. D.; Ramachandran, R.; Lynnes, C.

    2009-05-01

    A small but growing number of scientists are beginning to harness Web 2.0 technologies, such as wikis, blogs, and social tagging, as a transformative way of doing science. These technologies provide researchers easy mechanisms to critique, suggest and share ideas, data and algorithms. At the same time, large suites of algorithms for science analysis are being made available as remotely-invokable Web Services, which can be chained together to create analysis workflows. This provides the research community an unprecedented opportunity to collaborate by sharing their workflows with one another, reproducing and analyzing research results, and leveraging colleagues' expertise to expedite the process of scientific discovery. However, wikis and similar technologies are limited to text, static images and hyperlinks, providing little support for collaborative data analysis. A team of information technology and Earth science researchers from multiple institutions have come together to improve community collaboration in science analysis by developing a customizable "software appliance" to build collaborative portals for Earth Science services and analysis workflows. The critical requirement is that researchers (not just information technologists) be able to build collaborative sites around service workflows within a few hours. We envision online communities coming together, much like Finnish "talkoot" (a barn raising), to build a shared research space. Talkoot extends a freely available, open source content management framework with a series of modules specific to Earth Science for registering, creating, managing, discovering, tagging and sharing Earth Science web services and workflows for science data processing, analysis and visualization. Users will be able to author a "science story" in shareable web notebooks, including plots or animations, backed up by an executable workflow that directly reproduces the science analysis. New services and workflows of interest will be

  20. G306.3-0.9: A Newly Discovered Young Galactic Supernova Remnant

    NASA Technical Reports Server (NTRS)

    Reynolds, Mark T.; Loi, Syheh T.; Murphy, Tara; Miller, Jon M.; Maitra, Dipankar; Gueltekin, Kayhan; Gehrels, Neil; Kennea, Jamie A.; Siegel, Michael H.; Gelbord, Jonathan; hide

    2013-01-01

    We present X-ray and radio observations of the new Galactic supernova remnant (SNR) G306.3-0.9, recently discovered by Swift. Chandra imaging reveals a complex morphology, dominated by a bright shock. The X-ray spectrum is broadly consistent with a young SNR in the Sedov phase, implying an age of 2500 yr for a distance of 8 kpc, plausibly identifying this as one of the 20 youngest Galactic SNRs. Australia Telescope Compact Array imaging reveals a prominent ridge of radio emission that correlates with the X-ray emission. We find a flux density of 160 mJy at 1 GHz, which is the lowest radio flux recorded for a Galactic SNR to date. The remnant is also detected at 24µm, indicating the presence of irradiated warm dust. The data reveal no compelling evidence for the presence of a compact stellar remnant.

  1. A Data Analytics Approach to Discovering Unique Microstructural Configurations Susceptible to Fatigue

    NASA Astrophysics Data System (ADS)

    Jha, S. K.; Brockman, R. A.; Hoffman, R. M.; Sinha, V.; Pilchak, A. L.; Porter, W. J.; Buchanan, D. J.; Larsen, J. M.; John, R.

    2018-05-01

    Principal component analysis and fuzzy c-means clustering algorithms were applied to slip-induced strain and geometric metric data in an attempt to discover unique microstructural configurations and their frequencies of occurrence in statistically representative instantiations of a titanium alloy microstructure. Grain-averaged fatigue indicator parameters were calculated for the same instantiation. The fatigue indicator parameters strongly correlated with the spatial location of the microstructural configurations in the principal components space. The fuzzy c-means clustering method identified clusters of data that varied in terms of their average fatigue indicator parameters. Furthermore, the number of points in each cluster was inversely correlated to the average fatigue indicator parameter. This analysis demonstrates that data-driven methods have significant potential for providing unbiased determination of unique microstructural configurations and their frequencies of occurrence in a given volume from the point of view of strain localization and fatigue crack initiation.

  2. ["A" or ... "The" precious manuscript of the "Long life Elixir" just discovered].

    PubMed

    Grelaud, Jean-Pierre

    2012-05-01

    This study relates, describes, analyzes & comments the content of a recently discovered old manuscript, written probably at the beginning of the 18th century, and compares it with the well known "Long life Elixir, or Swedish Elixir", manuscript found on a Swedish doctor who died at 104 years old as a result of a fall from his horse... The origin of this new manuscript can be established from 1700 to 1710, and seems to be probably anterior to the well known Swedish manuscript, meanwhile the text is almost similar,... and also is more complete than this one! We learn that the "Manna" is synonymic here of "fine Rhubarb". Another recipe, unknown on the other manuscript and titled "Dalibour Water" is also published: By similar way, this formula brings some new details, in particular in the exact composition, the preparation and the use of the "Long Life Elixir".

  3. The Impact of Discovering Life beyond Earth

    NASA Astrophysics Data System (ADS)

    Dick, Steven J.

    2016-01-01

    Introduction: astrobiology and society Steven J. Dick; Part I. Motivations and Approaches. How Do We Frame the Problems of Discovery and Impact?: Introduction; 1. Current approaches to finding life beyond earth, and what happens if we do Seth Shostak; 2. The philosophy of astrobiology: the Copernican and Darwinian presuppositions Iris Fry; 3. History, discovery, analogy: three approaches to the impact of discovering life beyond earth Steven J. Dick; 4. Silent impact: why the discovery of extraterrestrial life should be silent Clément Vidal; Part II. Transcending Anthropocentrism. How Do We Move beyond our Own Preconceptions of Life, Intelligence and Culture?: Introduction; 5. The landscape of life Dirk Schulze-Makuch; 6. The landscape of intelligence Lori Marino; 7. Universal biology: assessing universality from a single example Carlos Mariscal; 8. Equating culture, civilization, and moral development in imagining extraterrestrial intelligence: anthropocentric assumptions? John Traphagan; 9. Communicating with the other: infinity, geometry, and universal math and science Douglas Vakoch; Part III. Philosophical, Theological, and Moral Impact. How Do We Comprehend the Cultural Challenges Raised by Discovery?: Introduction; 10. Life, intelligence and the pursuit of value in cosmic evolution Mark Lupisella; 11. 'Klaatu barada nikto' - or, do they really think like us? Michael Ruse; 12. Alien minds Susan Schneider; 13. The moral subject of astrobiology: guideposts for exploring our ethical and political responsibilities towards extraterrestrial life Elspeth Wilson and Carol Cleland; 14. Astrobiology and theology Robin Lovin; 15. Would you baptize an extraterrestrial? Guy Consolmagno, SJ; Part IV. Practical Considerations: How Should Society Prepare for Discovery - and Non-Discovery?: Introduction; 16. Is there anything new about astrobiology and society? Jane Maienschein; 17. Evaluating preparedness for the discovery of extraterrestrial life: considering potential

  4. FIRST PHOTOMETRIC INVESTIGATION OF THE NEWLY DISCOVERED W UMa-TYPE BINARY STAR MR Com

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Qian, S.-B.; Liu, N.-P.; Liao, W.-P.

    By analyzing multi-color light curves of the newly discovered W UMa-type binary, MR Com, we discovered that it is a shallow-contact binary with a degree of contact factor of f = 10.0% {+-} 2.1%. Photometric solutions reveal that MR Com is a W-type system with a mass ratio of q = 3.9 where the less massive component is about 90 K hotter than the more massive one. By investigating all of the available times of minimum light, we found that the general trend of the Observed-Calculated (O - C) curve shows a downward parabolic variation while it undergoes a cyclicmore » variation with a small amplitude of 0.0031 days and a period of 10.1 yr. The downward parabolic change corresponds to a long-term decrease in the orbital period at a rate of P-dot = -5.3 x 10{sup -7} days yr{sup -1} that may be caused by a combination of a mass transfer and an angular momentum loss (AML) via magnetic braking. Among the 16 shallow-contact systems with a decreasing orbital period, MR Com has the lowest mass ratio (e.g., 1/q = 0.26). The shallow-contact configuration, the low-mass ratio, and the long-term period decrease all suggest that systems similar to MR Com are on the AML-controlled stage of the evolutionary scheme proposed by Qian. They will oscillate around a critical mass ratio and evolve into a deep contact with a higher mass ratio. The small-amplitude cyclic change in the O - C curve was analyzed for the light-travel time effect via the presence of an extremely cool stellar companion.« less

  5. Discovering protein complexes in protein interaction networks via exploring the weak ties effect

    PubMed Central

    2012-01-01

    Background Studying protein complexes is very important in biological processes since it helps reveal the structure-functionality relationships in biological networks and much attention has been paid to accurately predict protein complexes from the increasing amount of protein-protein interaction (PPI) data. Most of the available algorithms are based on the assumption that dense subgraphs correspond to complexes, failing to take into account the inherence organization within protein complex and the roles of edges. Thus, there is a critical need to investigate the possibility of discovering protein complexes using the topological information hidden in edges. Results To provide an investigation of the roles of edges in PPI networks, we show that the edges connecting less similar vertices in topology are more significant in maintaining the global connectivity, indicating the weak ties phenomenon in PPI networks. We further demonstrate that there is a negative relation between the weak tie strength and the topological similarity. By using the bridges, a reliable virtual network is constructed, in which each maximal clique corresponds to the core of a complex. By this notion, the detection of the protein complexes is transformed into a classic all-clique problem. A novel core-attachment based method is developed, which detects the cores and attachments, respectively. A comprehensive comparison among the existing algorithms and our algorithm has been made by comparing the predicted complexes against benchmark complexes. Conclusions We proved that the weak tie effect exists in the PPI network and demonstrated that the density is insufficient to characterize the topological structure of protein complexes. Furthermore, the experimental results on the yeast PPI network show that the proposed method outperforms the state-of-the-art algorithms. The analysis of detected modules by the present algorithm suggests that most of these modules have well biological significance in

  6. Evaluation and application of summary statistic imputation to discover new height-associated loci.

    PubMed

    Rüeger, Sina; McDaid, Aaron; Kutalik, Zoltán

    2018-05-01

    As most of the heritability of complex traits is attributed to common and low frequency genetic variants, imputing them by combining genotyping chips and large sequenced reference panels is the most cost-effective approach to discover the genetic basis of these traits. Association summary statistics from genome-wide meta-analyses are available for hundreds of traits. Updating these to ever-increasing reference panels is very cumbersome as it requires reimputation of the genetic data, rerunning the association scan, and meta-analysing the results. A much more efficient method is to directly impute the summary statistics, termed as summary statistics imputation, which we improved to accommodate variable sample size across SNVs. Its performance relative to genotype imputation and practical utility has not yet been fully investigated. To this end, we compared the two approaches on real (genotyped and imputed) data from 120K samples from the UK Biobank and show that, genotype imputation boasts a 3- to 5-fold lower root-mean-square error, and better distinguishes true associations from null ones: We observed the largest differences in power for variants with low minor allele frequency and low imputation quality. For fixed false positive rates of 0.001, 0.01, 0.05, using summary statistics imputation yielded a decrease in statistical power by 9, 43 and 35%, respectively. To test its capacity to discover novel associations, we applied summary statistics imputation to the GIANT height meta-analysis summary statistics covering HapMap variants, and identified 34 novel loci, 19 of which replicated using data in the UK Biobank. Additionally, we successfully replicated 55 out of the 111 variants published in an exome chip study. Our study demonstrates that summary statistics imputation is a very efficient and cost-effective way to identify and fine-map trait-associated loci. Moreover, the ability to impute summary statistics is important for follow-up analyses, such as Mendelian

  7. Evaluation and application of summary statistic imputation to discover new height-associated loci

    PubMed Central

    2018-01-01

    As most of the heritability of complex traits is attributed to common and low frequency genetic variants, imputing them by combining genotyping chips and large sequenced reference panels is the most cost-effective approach to discover the genetic basis of these traits. Association summary statistics from genome-wide meta-analyses are available for hundreds of traits. Updating these to ever-increasing reference panels is very cumbersome as it requires reimputation of the genetic data, rerunning the association scan, and meta-analysing the results. A much more efficient method is to directly impute the summary statistics, termed as summary statistics imputation, which we improved to accommodate variable sample size across SNVs. Its performance relative to genotype imputation and practical utility has not yet been fully investigated. To this end, we compared the two approaches on real (genotyped and imputed) data from 120K samples from the UK Biobank and show that, genotype imputation boasts a 3- to 5-fold lower root-mean-square error, and better distinguishes true associations from null ones: We observed the largest differences in power for variants with low minor allele frequency and low imputation quality. For fixed false positive rates of 0.001, 0.01, 0.05, using summary statistics imputation yielded a decrease in statistical power by 9, 43 and 35%, respectively. To test its capacity to discover novel associations, we applied summary statistics imputation to the GIANT height meta-analysis summary statistics covering HapMap variants, and identified 34 novel loci, 19 of which replicated using data in the UK Biobank. Additionally, we successfully replicated 55 out of the 111 variants published in an exome chip study. Our study demonstrates that summary statistics imputation is a very efficient and cost-effective way to identify and fine-map trait-associated loci. Moreover, the ability to impute summary statistics is important for follow-up analyses, such as Mendelian

  8. Widening perspectives: the intellectual and social benefits of astrobiology (regardless of whether extraterrestrial life is discovered or not)

    NASA Astrophysics Data System (ADS)

    Crawford, I. A.

    2018-01-01

    Astrobiology is usually defined as the study of the origin, evolution, distribution and future of life in the Universe. As such it is inherently interdisciplinary and cannot help but engender a worldview infused by cosmic and evolutionary perspectives. Both these attributes of the study of astrobiology are, and will increasingly prove to be, beneficial to society regardless of whether extraterrestrial life is discovered or not.

  9. Feature-Based Morphometry: Discovering Group-related Anatomical Patterns

    PubMed Central

    Toews, Matthew; Wells, William; Collins, D. Louis; Arbel, Tal

    2015-01-01

    This paper presents feature-based morphometry (FBM), a new, fully data-driven technique for discovering patterns of group-related anatomical structure in volumetric imagery. In contrast to most morphometry methods which assume one-to-one correspondence between subjects, FBM explicitly aims to identify distinctive anatomical patterns that may only be present in subsets of subjects, due to disease or anatomical variability. The image is modeled as a collage of generic, localized image features that need not be present in all subjects. Scale-space theory is applied to analyze image features at the characteristic scale of underlying anatomical structures, instead of at arbitrary scales such as global or voxel-level. A probabilistic model describes features in terms of their appearance, geometry, and relationship to subject groups, and is automatically learned from a set of subject images and group labels. Features resulting from learning correspond to group-related anatomical structures that can potentially be used as image biomarkers of disease or as a basis for computer-aided diagnosis. The relationship between features and groups is quantified by the likelihood of feature occurrence within a specific group vs. the rest of the population, and feature significance is quantified in terms of the false discovery rate. Experiments validate FBM clinically in the analysis of normal (NC) and Alzheimer's (AD) brain images using the freely available OASIS database. FBM automatically identifies known structural differences between NC and AD subjects in a fully data-driven fashion, and an equal error classification rate of 0.80 is achieved for subjects aged 60-80 years exhibiting mild AD (CDR=1). PMID:19853047

  10. What hadron collider is required to discover or falsify natural supersymmetry?

    NASA Astrophysics Data System (ADS)

    Baer, Howard; Barger, Vernon; Gainer, James S.; Huang, Peisi; Savoy, Michael; Serce, Hasan; Tata, Xerxes

    2017-11-01

    Weak scale supersymmetry (SUSY) remains a compelling extension of the Standard Model because it stabilizes the quantum corrections to the Higgs and W , Z boson masses. In natural SUSY models these corrections are, by definition, never much larger than the corresponding masses. Natural SUSY models all have an upper limit on the gluino mass, too high to lead to observable signals even at the high luminosity LHC. However, in models with gaugino mass unification, the wino is sufficiently light that supersymmetry discovery is possible in other channels over the entire natural SUSY parameter space with no worse than 3% fine-tuning. Here, we examine the SUSY reach in more general models with and without gaugino mass unification (specifically, natural generalized mirage mediation), and show that the high energy LHC (HE-LHC), a pp collider with √{ s } = 33 TeV, will be able to detect the SUSY signal over the entire allowed mass range. Thus, HE-LHC would either discover or conclusively falsify natural SUSY with better than 3% fine-tuning using a conservative measure that allows for correlations among the model parameters.

  11. Newly discovered Wolf-Rayet and weak emission-line central stars of planetary nebulae

    NASA Astrophysics Data System (ADS)

    DePew, K.; Parker, Q. A.; Miszalski, B.; De Marco, O.; Frew, D. J.; Acker, A.; Kovacevic, A. V.; Sharp, R. G.

    2011-07-01

    We present the spectra of 32 previously unpublished confirmed and candidate Wolf-Rayet ([WR]) and weak emission-line (WELS) central stars of planetary nebulae (CSPNe). 18 stars have been discovered in the Macquarie/AAO/Strasbourg Hα (MASH) PN survey sample, and we have also uncovered 14 confirmed and candidate [WR]s and WELS among the CSPNe of previously known PNe. Spectral classifications have been undertaken using both Acker & Neiner and Crowther, De Marco & Barlow schemes. 22 members in this sample are identified as probable [WR]s; the remaining 10 appear to be WELS. Observations undertaken as part of the MASH spectroscopic survey have now increased the number of known [WR]s by ˜30 per cent. This will permit a better analysis of [WR] subclass distribution, metallicity effects and evolutionary sequences in these uncommon objects.

  12. A systematic approach to adnexal masses discovered on ultrasound: the ADNEx MR scoring system.

    PubMed

    Sadowski, Elizabeth A; Robbins, Jessica B; Rockall, Andrea G; Thomassin-Naggara, Isabelle

    2018-03-01

    Adnexal lesions are a common occurrence in radiology practice and imaging plays a crucial role in triaging women appropriately. Current trends toward early detection and characterization have increased the need for accurate imaging assessment of adnexal lesions prior to treatment. Ultrasound is the first-line imaging modality for assessing adnexal lesions; however, approximately 20% of lesions are incompletely characterized after ultrasound evaluation. Secondary assessment with MR imaging using the ADNEx MR Scoring System has been demonstrated as highly accurate in the characterization of adnexal lesions and in excluding ovarian cancer. This review will address the role of MR imaging in further assessment of adnexal lesions discovered on US, and the utility of the ADNEx MR Scoring System.

  13. BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature.

    PubMed

    de la Calle, Guillermo; García-Remesal, Miguel; Chiesa, Stefano; de la Iglesia, Diana; Maojo, Victor

    2009-10-07

    The rapid evolution of Internet technologies and the collaborative approaches that dominate the field have stimulated the development of numerous bioinformatics resources. To address this new framework, several initiatives have tried to organize these services and resources. In this paper, we present the BioInformatics Resource Inventory (BIRI), a new approach for automatically discovering and indexing available public bioinformatics resources using information extracted from the scientific literature. The index generated can be automatically updated by adding additional manuscripts describing new resources. We have developed web services and applications to test and validate our approach. It has not been designed to replace current indexes but to extend their capabilities with richer functionalities. We developed a web service to provide a set of high-level query primitives to access the index. The web service can be used by third-party web services or web-based applications. To test the web service, we created a pilot web application to access a preliminary knowledge base of resources. We tested our tool using an initial set of 400 abstracts. Almost 90% of the resources described in the abstracts were correctly classified. More than 500 descriptions of functionalities were extracted. These experiments suggest the feasibility of our approach for automatically discovering and indexing current and future bioinformatics resources. Given the domain-independent characteristics of this tool, it is currently being applied by the authors in other areas, such as medical nanoinformatics. BIRI is available at http://edelman.dia.fi.upm.es/biri/.

  14. Discovering motion primitives for unsupervised grouping and one-shot learning of human actions, gestures, and expressions.

    PubMed

    Yang, Yang; Saleemi, Imran; Shah, Mubarak

    2013-07-01

    This paper proposes a novel representation of articulated human actions and gestures and facial expressions. The main goals of the proposed approach are: 1) to enable recognition using very few examples, i.e., one or k-shot learning, and 2) meaningful organization of unlabeled datasets by unsupervised clustering. Our proposed representation is obtained by automatically discovering high-level subactions or motion primitives, by hierarchical clustering of observed optical flow in four-dimensional, spatial, and motion flow space. The completely unsupervised proposed method, in contrast to state-of-the-art representations like bag of video words, provides a meaningful representation conducive to visual interpretation and textual labeling. Each primitive action depicts an atomic subaction, like directional motion of limb or torso, and is represented by a mixture of four-dimensional Gaussian distributions. For one--shot and k-shot learning, the sequence of primitive labels discovered in a test video are labeled using KL divergence, and can then be represented as a string and matched against similar strings of training videos. The same sequence can also be collapsed into a histogram of primitives or be used to learn a Hidden Markov model to represent classes. We have performed extensive experiments on recognition by one and k-shot learning as well as unsupervised action clustering on six human actions and gesture datasets, a composite dataset, and a database of facial expressions. These experiments confirm the validity and discriminative nature of the proposed representation.

  15. Examination - Plants - Lunar (Germ Free) Soil - Plant Laboratory - MSC

    NASA Image and Video Library

    1969-10-08

    S69-53894 (October 1969) --- Dr. Charles H. Walkinshaw, Jr., Spaceflight Biotechnology Branch botanist, Preventive Medicine Division, Manned Spacecraft Center (MSC), examines sorghum and tobacco plants in lunar (germ free) soil in the Plant Laboratory of the MSC’s Lunar Receiving Laboratory. The soil was brought back from the moon by the crew of the Apollo 11 lunar landing mission.

  16. Take a Voyage of Discovery

    ERIC Educational Resources Information Center

    Texley, Juliana

    2008-01-01

    On December 27, 1831, the "H.M.S. Beagle" left Plymouth Harbor for a round-the-world voyage. On board was would-be botanist Charles Darwin, the best tour guide biology has ever known. In 2009, we will celebrate Darwin's 200th birthday and the 150th anniversary of "The Origin of Species" publication. What better way to prepare for this celebration…

  17. A history of tree planting in West Virginia

    Treesearch

    Kenneth L. Carvell

    2012-01-01

    West Virginia has often been described by botanists as “the most southern of the northern states, the most northern of the southern states, the most eastern of the western states, and the most western of the eastern states." Truly, West Virginia, "the Mountain State," is the cross roads for many species of trees and herbaceous vegetation, and even today...

  18. Grayia spinosa (Hook.) Moq.: spiny hopsage

    Treesearch

    Nancy L. Shaw; Marshall R. Haferkamp; Emerenciana G. Hurd

    2008-01-01

    The genus Grayia Hook. & Arn., named for the American botanist Asa Gray, contains a single species - spiny hopsage (table 1). Plants are erect to rounded, summer-deciduous shrubs 0.3 to 1.2 (1.5) m tall. Branches are divergent and thorn-tipped, with whitish gray to brownish bark that exfoliates in long strips. Leaves are gray-green, alternate, entire, and fleshy,...

  19. Growth of ten regional races of ponderosa pine in six plantations.

    Treesearch

    Thornton T. Munger

    1947-01-01

    Ponderosa pine occurs over a wide range--from the Great Plains to the Pacific and from British Columbia to Mexico. Within this range there is great variation in the form and life habits of this tree. It has been long recognized that "regional races" or strains are present. Some of these regional races have been recognized by some botanists as varieties, such...

  20. Inner solar system material discovered in the Oort cloud

    PubMed Central

    Meech, Karen J.; Yang, Bin; Kleyna, Jan; Hainaut, Olivier R.; Berdyugina, Svetlana; Keane, Jacqueline V.; Micheli, Marco; Morbidelli, Alessandro; Wainscoat, Richard J.

    2016-01-01

    We have observed C/2014 S3 (PANSTARRS), a recently discovered object on a cometary orbit coming from the Oort cloud that is physically similar to an inner main belt rocky S-type asteroid. Recent dynamical models successfully reproduce the key characteristics of our current solar system; some of these models require significant migration of the giant planets, whereas others do not. These models provide different predictions on the presence of rocky material expelled from the inner solar system in the Oort cloud. C/2014 S3 could be the key to verifying these predictions of the migration-based dynamical models. Furthermore, this object displays a very faint, weak level of comet-like activity, five to six orders of magnitude less than that of typical ice-rich comets on similar Orbits coming from the Oort cloud. For the nearly tailless appearance, we are calling C/2014 S3 a Manx object. Various arguments convince us that this activity is produced by sublimation of volatile ice, that is, normal cometary activity. The activity implies that C/2014 S3 has retained a tiny fraction of the water that is expected to be present at its formation distance in the inner solar system. We may be looking at fresh inner solar system Earth-forming material that was ejected from the inner solar system and preserved for billions of years in the Oort cloud. PMID:27386512

  1. [Casal Ventoso: the need to discover other ways of living].

    PubMed

    1994-01-01

    It is often thought that it is vital for people to discover that there are other ways of existing, talking, and living, as articulated during a conversation at the social center of Casal Ventoso. Here this hope unites part of the staff in a district characterized by poverty and the trafficking in and consumption of drugs. In this climate there is a perpetuation of almost everything bad. In the facility, sensitive care is practiced even for those who just pass through here, and a systematic effort is exerted to make people realize that there are other patterns of living. Talking about family planning in Casa Ventoso means bringing up a taboo topic for these people in a marginalized area. There is plenty of evidence of social problems, which underscores the need for reacting and inducing change. During the long conversation it was felt that the two basic issues were correlated: the reality and the needs of the district and an effort to respond to them as well as the example of the center as a way pointing to other solutions and possibilities of life. The social center has developed its basic social activities in the area of work with children and young people, although physical space is still inadequate and there is shortage of funds.

  2. Function and application of a non-ester-hydrolyzing carboxylesterase discovered in tulip.

    PubMed

    Nomura, Taiji

    2017-01-01

    Plants have evolved secondary metabolite biosynthetic pathways of immense rich diversity. The genes encoding enzymes for secondary metabolite biosynthesis have evolved through gene duplication followed by neofunctionalization, thereby generating functional diversity. Emerging evidence demonstrates that some of those enzymes catalyze reactions entirely different from those usually catalyzed by other members of the same family; e.g. transacylation catalyzed by an enzyme similar to a hydrolytic enzyme. Tuliposide-converting enzyme (TCE), which we recently discovered from tulip, catalyzes the conversion of major defensive secondary metabolites, tuliposides, to antimicrobial tulipalins. The TCEs belong to the carboxylesterase family in the α/β-hydrolase fold superfamily, and specifically catalyze intramolecular transesterification, but not hydrolysis. This non-ester-hydrolyzing carboxylesterase is an example of an enzyme showing catalytic properties that are unpredictable from its primary structure. This review describes the biochemical and physiological aspects of tulipalin biogenesis, and the diverse functions of plant carboxylesterases in the α/β-hydrolase fold superfamily.

  3. Drosophila Models of Parkinson's Disease: Discovering Relevant Pathways and Novel Therapeutic Strategies

    PubMed Central

    Muñoz-Soriano, Verónica; Paricio, Nuria

    2011-01-01

    Parkinson's disease (PD) is the second most common neurodegenerative disorder and is mainly characterized by the selective and progressive loss of dopaminergic neurons, accompanied by locomotor defects. Although most PD cases are sporadic, several genes are associated with rare familial forms of the disease. Analyses of their function have provided important insights into the disease process, demonstrating that three types of cellular defects are mainly involved in the formation and/or progression of PD: abnormal protein aggregation, oxidative damage, and mitochondrial dysfunction. These studies have been mainly performed in PD models created in mice, fruit flies, and worms. Among them, Drosophila has emerged as a very valuable model organism in the study of either toxin-induced or genetically linked PD. Indeed, many of the existing fly PD models exhibit key features of the disease and have been instrumental to discover pathways relevant for PD pathogenesis, which could facilitate the development of therapeutic strategies. PMID:21512585

  4. Health status of a recently discovered population of feral swine in Kansas

    USGS Publications Warehouse

    Gipson, P.S.; Veatch, J.K.; Matlack, R.S.; Jones, D.P.

    1999-01-01

    Twenty feral hogs (Sus scrofa) from a newly discovered population on Fort Riley Army Base (Kansas, USA) were shot and examined from November 1993 through February 1994 to assess the health of the population. The hogs were generally healthy, although serologic evidence indicated that some individuals had been exposed to parvovirus, enterovirus, and swine influenza. We found no indications of brucellosis, pseudorabies, or porcine respiratory and reproductive syndrome. Lung worms (Metastrongylus spp.), round worms (Ascaris suum), and whipworms (Trichuris suis) were found in nine, four and two of the hogs, respectively. Seven hogs had infestations of lice (Haematopinus suis). Fence-line contacts were documented between four wild boars and domestic sows, and in three cases wild boars entered pens containing domestic sows. We recommend that hogs be examined periodically from this and other wild populations to monitor health status since new animals may enter populations through deliberate translocation, escape from shooting preserves or domestic swine producers, or dispersal from other feral populations.

  5. Newly discovered Neanderthal remains from Shanidar Cave, Iraqi Kurdistan, and their attribution to Shanidar 5.

    PubMed

    Pomeroy, Emma; Mirazón Lahr, Marta; Crivellaro, Federica; Farr, Lucy; Reynolds, Tim; Hunt, Chris O; Barker, Graeme

    2017-10-01

    The Neanderthal remains from Shanidar Cave, excavated between 1951 and 1960, have played a central role in debates concerning diverse aspects of Neanderthal morphology and behavior. In 2015 and 2016, renewed excavations at the site uncovered hominin remains from the immediate area where the partial skeleton of Shanidar 5 was found in 1960. Shanidar 5 was a robust adult male estimated to have been aged over 40 years at the time of death. Comparisons of photographs from the previous and recent excavations indicate that the old and new remains were directly adjacent to one another, while the disturbed arrangement and partial crushing of the new fossils is consistent with descriptions and photographs of the older discoveries. The newly discovered bones include fragments of several vertebrae, a left hamate, part of the proximal left femur, a heavily crushed partial pelvis, and the distal half of the right tibia and fibula and associated talus and navicular. All these elements were previously missing from Shanidar 5, and morphological and metric data are consistent with the new elements belonging to this individual. A newly discovered partial left pubic symphysis indicates an age at death of 40-50 years, also consistent with the age of Shanidar 5 estimated previously. Thus, the combined evidence strongly suggests that the new finds can be attributed to Shanidar 5. Ongoing analyses of associated samples, including for sediment morphology, palynology, and dating, will therefore offer new evidence as to how this individual was deposited in the cave and permit new analyses of the skeleton itself and broader discussion of Neanderthal morphology and variation. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. ESA's Integral discovers hidden black holes

    NASA Astrophysics Data System (ADS)

    2003-10-01

    discovered so far? Astronomers, who have been observing the object regularly, guess that it had remained invisible because there must be a very thick shell of obscuring material surrounding it. If that was the case, only the most energetic radiation from the object could get through the shell; less-energetic radiation would be blocked. That could explain why space telescopes that are sensitive only to low-energy radiation had overlooked the object, while Integral, specialised in detecting very energetic emissions, did see it. To test their theory, astronomers turned to ESA's XMM-Newton space observatory, which observes the sky in the X-ray wavelengths. As well as being sensitive to high-energy radiation, XMM-Newton is also able to check for the presence of obscuring material. Indeed, XMM-Newton detected this object last February, as well as the existence of a dense 'cocoon' of cold gas with a diameter of similar size to that of the Earth's orbit around the Sun. This obscuring material forming the cocoon is probably 'stellar wind', namely gas ejected by the supermassive companion star. Astronomers think that this gas may be accreted by the compact black hole, forming a dense shell around it. This obscuring cloud traps most of the energy produced inside it. The main author of these results, Roland Walter of the Integral Science Data Centre, Switzerland, explained: "Only photons with the highest energies [above 10 keV] could escape from that cocoon. IGR J16318-4848 has therefore not been detected by surveys performed at lower energies, nor by previous gamma-ray missions that were much less sensitive than Integral." The question now is to find out how many of these objects lurk in the Galaxy. XMM-Newton and Integral together are the perfect tools to do the job. They have already discovered two more new sources embedded in obscuring material. Future observations are planned. Christoph Winkler, ESA Project Scientist for Integral, said: "These early examples of using two

  7. UV-A/Blue-Light responses in algae

    NASA Technical Reports Server (NTRS)

    Senger, Horst; Hermsmeier, Dieter

    1994-01-01

    All life on earth depends on light. A variety of photoreceptors capture the light for a wide range of reactions. Photosynthetic organisms absorb the light necessary for energy transformation and charge separation facilitating photosynthesis. In addition to the bulk pigments there is a great diversity of photoreceptors present in minute concentrations that control development, metabolism and orientation of plants and microorganisms. Based on its spectral absorbance, the well-studied phytochrome system acts in the RL (red light) region as well as in the UV-A/BL (blue light) region where the above mentioned reactions are mediated by a variety of photoreceptors whose natures are largely unknown. Phyllogenetically the UV-A/BL photoreceptors seem to be more ancient pigments that eventually were replaced by the phytochrome system. However, there are many reports that suggest a coaction between the UV-A/BL receptors and the phytochrome system. In several cases the UV-A/BL activation is the prerequisite for the phytochrome reaction. Historically it was the German botanist Julius Sachs who first discovered in 1864 that phototropism in plants was due to BL reactions. It took over 70 years until Bunning (1937) and Galston and Baker (1949) rediscovered the BL response. Since then, an ever-increasing attention has been paid to this effect. In this contribution, the general aspect of UV-A/BL responses and especially the responsiveness of algae will be covered.

  8. The overlooked literary path to modern electrophysiology: philosophical dialogues, novels, and travel books.

    PubMed

    Finger, Stanley

    2013-01-01

    The early history of neurophysiology has two important roots. The earlier of the two involves various ideas about invisible animal spirits traversing the nerves. The other, which emerged during the eighteenth century, is based on the idea that the elusive spirits are electrical-that animal electricity really does exist. The latter idea stemmed in part from what was being discovered about three types of electric fishes and their shocks prior to Galvani's broader claim in 1791 for animal electricity. This contribution focuses on how the shocks of each of these fishes had been described by three writers outside the fields of physiology and medicine: Plato, the well-known Greek philosopher, who actually provided the first good description of the powers of torpedo rays; Aphra Behn, a leading English Restoration playwright and novelist, who introduced many English speakers to the creature that would become best known as the "electric eel"; and Michel Adanson, a French botanist, who seemed to be the first to compare albeit the electric catfish's shocks to those from a known source of electricity, a Leyden jar. All three authors were famous in their day, and all played important roles in the history of biological electricity by making others aware of one of Nature's wonders, fishes that could "torpify," even without direct contact. © 2013 Elsevier B.V. All rights reserved.

  9. Making a Theist out of Darwin: Asa Gray's Post-Darwinian Natural Theology

    NASA Astrophysics Data System (ADS)

    Russell Hunter, T.

    2012-07-01

    In March of 1860 the eminent Harvard Botanist and orthodox Christian Asa Gray began promoting the Origin of Species in hopes of securing a fair examination of Darwin's evolutionary theory among theistic naturalists. To this end, Gray sought to demonstrate that Darwin had not written atheistically and that his theory of evolution by natural selection had not presented any new scientific or theological difficulties for traditional Christian belief. From his personal correspondence with the author of the Origin, Gray well knew that Darwin did not affirm God's "particular" design of nature but conceded to the possibility that evolution proceeded according to "designed laws." From this concession, Gray attempted to develop a post-Darwinian natural theology which encouraged theistic naturalists to view God's design of nature through the evolutionary process in a manner similar to the way in which they viewed God's Providential interaction with human history. Indeed, securing a fair reading of the Origin was not Gray's sole aim as a promoter of Darwinian ideas. In Darwin's theory of natural selection, Gray believed he had discovered the means by which a more robust natural theological conception of the living and evolving natural world could be developed. In this paper I outline Gray's efforts to produce and popularize a theistic interpretation of Darwinian theory in order to correct various misconceptions concerning Gray's natural theological views and their role in the Darwinian Revolution.

  10. Kanyawara Virus: A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies Infesting Previously Unknown Pteropodid Bats in Uganda.

    PubMed

    Goldberg, Tony L; Bennett, Andrew J; Kityo, Robert; Kuhn, Jens H; Chapman, Colin A

    2017-07-13

    Bats are natural reservoir hosts of highly virulent pathogens such as Marburg virus, Nipah virus, and SARS coronavirus. However, little is known about the role of bat ectoparasites in transmitting and maintaining such viruses. The intricate relationship between bats and their ectoparasites suggests that ectoparasites might serve as viral vectors, but evidence to date is scant. Bat flies, in particular, are highly specialized obligate hematophagous ectoparasites that incidentally bite humans. Using next-generation sequencing, we discovered a novel ledantevirus (mononegaviral family Rhabdoviridae, genus Ledantevirus) in nycteribiid bat flies infesting pteropodid bats in western Uganda. Mitochondrial DNA analyses revealed that both the bat flies and their bat hosts belong to putative new species. The coding-complete genome of the new virus, named Kanyawara virus (KYAV), is only distantly related to that of its closest known relative, Mount Elgon bat virus, and was found at high titers in bat flies but not in blood or on mucosal surfaces of host bats. Viral genome analysis indicates unusually low CpG dinucleotide depletion in KYAV compared to other ledanteviruses and rhabdovirus groups, with KYAV displaying values similar to rhabdoviruses of arthropods. Our findings highlight the possibility of a yet-to-be-discovered diversity of potentially pathogenic viruses in bat ectoparasites.

  11. A nurse-run clinic for patients with incidentally discovered small abdominal aortic aneurysms is feasible and cost-effective.

    PubMed

    Griffin, J L; Clarke, G A; Roake, J A; Lewis, D R

    2015-04-01

    Patients with incidentally discovered small abdominal aortic aneurysms (AAA) require assessment by a vascular surgery department for possible enrollment in a surveillance programme. Our unit implemented a vascular nurse-run AAA clinic in October 2010. The aim of this study was to assess the feasibility of a specialist nurse-run small AAA clinic. Demographic and clinical data were collected prospectively for all patients seen in the new vascular nurse clinic between October 2010 and November 2012. A validated AAA operative mortality score was used to aid decision making by the vascular nurse. Some 250 patients were seen in the clinic. 198 (79.2%) patients were enrolled in surveillance, 40 (16%) declined enrollment and 12 (4.8%) were referred to a consultant clinic for further assessment. The majority of patients were male and the mean age was 73.7 years. Co-morbidities included hypertension, a history of cardiovascular disease, and hyperlipidaemia. The majority of referrals were considered to be low operative risk. No aneurysms ruptured whilst under surveillance. A nurse-run clinic that assesses patients with incidentally discovered small AAAs for inclusion in AAA surveillance is a feasible alternative to assessment of these patients in a consultant-run clinic. © The Author(s) 2014 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

  12. Cervical Disk Replacement With Discover Versus Fusion in a Single-Level Cervical Disk Disease: A Prospective Single-Center Randomized Trial With a Minimum 2-Year Follow-up.

    PubMed

    Rožanković, Marjan; Marasanov, Sergej M; Vukić, Miroslav

    2017-06-01

    Prospective randomized study. To compare the clinical outcome after Discover arthroplasty versus anterior cervical discectomy and fusion (ACDF) in patients treated for symptomatic single-level cervical disk disease. ACDF is still the gold standard for surgical treatment of cervical spine degenerative disk disease. However, results of many studies suggest that it may cause degenerative changes at levels immediately above and below the fusion, known as adjacent segment degenerative disease. Cervical arthroplasty has recently been introduced as an alternative to standard procedure of ACDF. It showed decreased surgical morbidity, decreased complications from postoperative immobilization, and an earlier return to previous level of function. A total of 105 consecutive patients with single-level cervical disk disease, producing radiculopathy and/or myelopathy were randomly divided into groups to undergo ACDF or Discover arthroplasty. All patients were evaluated with preoperative and postoperative serial radiographic studies and clinically, using Neck Disability Index, Visual Analog Scale and neurological status at 3, 6, 12, and 24 months. The results of our study indicate that cervical arthroplasty using Discover Artificial Cervical Disc provides favorable clinical and radiologic outcomes in a follow-up period of 24 months. There has been significant improvement in clinical parameters, Visual Analog Scale and Neck Disability Index, at 3, 6, 12, and 24 months in arthroplasty group comparing to control group. The Discover artificial cervical disc replacement offers favorable outcome compared with ACDF for a single-level cervical disk disease at short-term and long-term follow-up.

  13. The development of a scale to discover outpatients' perceptions of the relative desirability of different elements of doctors' communication behaviours.

    PubMed

    Leckie, Jackie; Bull, Ray; Vrij, Aldert

    2006-12-01

    The objective of the study was to discover which aspects of doctor communication behaviours are more or less desirable to patients who are attending medical outpatients clinics. Two hundred and twenty patients took part in the study, which was undertaken in four phases. In phase one, patients completed a 10-item questionnaire where they indicated, by means of a five-point scale, their preferences for doctor communication behaviours. In phases two and three patients qualitatively expressed the meaning that they ascribed to terminology that is used by some researchers to define doctor communication behaviours. In the final phase of the study a 12-item questionnaire was developed by integrating the phase one questionnaire and patients' report from phases two and three. Patients indicated, by means of a five-point scale, their preferences for different communication behaviours that might be used by doctors. Patient's preferences were ranked in terms of the most to the least preferred behaviours. The findings suggest that patients most prefer consultations where doctors give information spontaneously and display affective behaviours. They least preferred consultations where medical matters are discussed and where information is not forthcoming. Furthermore, the finding suggests that the use of blanket terms by researches in defining doctor communication can lead to differences in interpretation by patients. The methods developed in the study appear to provide a useful tool to discover patients' desires in terms of doctor communication. The rank scale developed in the study could prove useful to medical practice. It could, for example, provide a straightforward method whereby doctors could readily access researcher's recommendations about communication. Furthermore, the scale could be used in various healthcare settings in order to discover if different patient groups vary in terms of the doctor communication they desire.

  14. Screening the receptorome to discover the molecular targets for plant-derived psychoactive compounds: a novel approach for CNS drug discovery.

    PubMed

    Roth, Bryan L; Lopez, Estela; Beischel, Scott; Westkaemper, Richard B; Evans, Jon M

    2004-05-01

    Because psychoactive plants exert profound effects on human perception, emotion, and cognition, discovering the molecular mechanisms responsible for psychoactive plant actions will likely yield insights into the molecular underpinnings of human consciousness. Additionally, it is likely that elucidation of the molecular targets responsible for psychoactive drug actions will yield validated targets for CNS drug discovery. This review article focuses on an unbiased, discovery-based approach aimed at uncovering the molecular targets responsible for psychoactive drug actions wherein the main active ingredients of psychoactive plants are screened at the "receptorome" (that portion of the proteome encoding receptors). An overview of the receptorome is given and various in silico, public-domain resources are described. Newly developed tools for the in silico mining of data derived from the National Institute of Mental Health Psychoactive Drug Screening Program's (NIMH-PDSP) K(i) Database (K(i) DB) are described in detail. Additionally, three case studies aimed at discovering the molecular targets responsible for Hypericum perforatum, Salvia divinorum, and Ephedra sinica actions are presented. Finally, recommendations are made for future studies.

  15. The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) 'On the plant-remains from the Downtonian of England and Wales'.

    PubMed

    Edwards, Dianne; Kenrick, Paul

    2015-04-19

    During the 1920s, the botanist W. H. Lang set out to collect and investigate some very unpromising fossils of uncertain affinity, which predated the known geological record of life on land. His discoveries led to a landmark publication in 1937, 'On the plant-remains from the Downtonian of England and Wales', in which he revealed a diversity of small fossil organisms of great simplicity that shed light on the nature of the earliest known land plants. These and subsequent discoveries have taken on new relevance as botanists seek to understand the plant genome and the early evolution of fundamental organ systems. Also, our developing knowledge of the composition of early land-based ecosystems and the interactions among their various components is contributing to our understanding of how life on land affects key Earth Systems (e.g. carbon cycle). The emerging paradigm is one of early life on land dominated by microbes, small bryophyte-like organisms and lichens. Collectively called cryptogamic covers, these are comparable with those that dominate certain ecosystems today. This commentary was written to celebrate the 350th anniversary of the journal Philosophical Transactions of the Royal Society.

  16. The nature of plant species

    PubMed Central

    Rieseberg, Loren H.; Wood, Troy E.; Baack, Eric J.

    2008-01-01

    Many botanists doubt the existence of plant species1–5, viewing them as arbitrary constructs of the human mind, as opposed to discrete, objective entities that represent reproductively independent lineages or ‘units of evolution’. However, the discreteness of plant species and their correspondence with reproductive communities have not been tested quantitatively, allowing zoologists to argue that botanists have been overly influenced by a few ‘botanical horror stories’, such as dandelions, blackberries and oaks6,7. Here we analyse phenetic and/or crossing relationships in over 400 genera of plants and animals. We show that although discrete phenotypic clusters exist in most genera (>80%), the correspondence of taxonomic species to these clusters is poor (<60%) and no different between plants and animals. Lack of congruence is caused by polyploidy, asexual reproduction and over-differentiation by taxonomists, but not by contemporary hybridization. Nonetheless, crossability data indicate that 70% of taxonomic species and 75% of phenotypic clusters in plants correspond to reproductively independent lineages (as measured by postmating isolation), and thus represent biologically real entities. Contrary to conventional wisdom8, plant species are more likely than animal species to represent reproductively independent lineages. PMID:16554818

  17. The nature of plant species.

    PubMed

    Rieseberg, Loren H; Wood, Troy E; Baack, Eric J

    2006-03-23

    Many botanists doubt the existence of plant species, viewing them as arbitrary constructs of the human mind, as opposed to discrete, objective entities that represent reproductively independent lineages or 'units of evolution'. However, the discreteness of plant species and their correspondence with reproductive communities have not been tested quantitatively, allowing zoologists to argue that botanists have been overly influenced by a few 'botanical horror stories', such as dandelions, blackberries and oaks. Here we analyse phenetic and/or crossing relationships in over 400 genera of plants and animals. We show that although discrete phenotypic clusters exist in most genera (> 80%), the correspondence of taxonomic species to these clusters is poor (< 60%) and no different between plants and animals. Lack of congruence is caused by polyploidy, asexual reproduction and over-differentiation by taxonomists, but not by contemporary hybridization. Nonetheless, crossability data indicate that 70% of taxonomic species and 75% of phenotypic clusters in plants correspond to reproductively independent lineages (as measured by postmating isolation), and thus represent biologically real entities. Contrary to conventional wisdom, plant species are more likely than animal species to represent reproductively independent lineages.

  18. The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) ‘On the plant-remains from the Downtonian of England and Wales'

    PubMed Central

    Edwards, Dianne; Kenrick, Paul

    2015-01-01

    During the 1920s, the botanist W. H. Lang set out to collect and investigate some very unpromising fossils of uncertain affinity, which predated the known geological record of life on land. His discoveries led to a landmark publication in 1937, ‘On the plant-remains from the Downtonian of England and Wales’, in which he revealed a diversity of small fossil organisms of great simplicity that shed light on the nature of the earliest known land plants. These and subsequent discoveries have taken on new relevance as botanists seek to understand the plant genome and the early evolution of fundamental organ systems. Also, our developing knowledge of the composition of early land-based ecosystems and the interactions among their various components is contributing to our understanding of how life on land affects key Earth Systems (e.g. carbon cycle). The emerging paradigm is one of early life on land dominated by microbes, small bryophyte-like organisms and lichens. Collectively called cryptogamic covers, these are comparable with those that dominate certain ecosystems today. This commentary was written to celebrate the 350th anniversary of the journal Philosophical Transactions of the Royal Society. PMID:25750238

  19. Learn about and Visit Historic College and University Campuses Using the National Park Service "Discover Our Shared Heritage Travel Itinerary Series"

    ERIC Educational Resources Information Center

    Shull, Carol D.

    2011-01-01

    The National Park Service actively educates the public about registered historic places on college and university campuses and encourages people to visit them through its "Discover Our Shared Heritage Travel Itinerary Series." By featuring the historic buildings and grounds of colleges and universities in the itineraries, the National…

  20. Discovering disease associations by integrating electronic clinical data and medical literature.

    PubMed

    Holmes, Antony B; Hawson, Alexander; Liu, Feng; Friedman, Carol; Khiabanian, Hossein; Rabadan, Raul

    2011-01-01

    Electronic health record (EHR) systems offer an exceptional opportunity for studying many diseases and their associated medical conditions within a population. The increasing number of clinical record entries that have become available electronically provides access to rich, large sets of patients' longitudinal medical information. By integrating and comparing relations found in the EHRs with those already reported in the literature, we are able to verify existing and to identify rare or novel associations. Of particular interest is the identification of rare disease co-morbidities, where the small numbers of diagnosed patients make robust statistical analysis difficult. Here, we introduce ADAMS, an Application for Discovering Disease Associations using Multiple Sources, which contains various statistical and language processing operations. We apply ADAMS to the New York-Presbyterian Hospital's EHR to combine the information from the relational diagnosis tables and textual discharge summaries with those from PubMed and Wikipedia in order to investigate the co-morbidities of the rare diseases Kaposi sarcoma, toxoplasmosis, and Kawasaki disease. In addition to finding well-known characteristics of diseases, ADAMS can identify rare or previously unreported associations. In particular, we report a statistically significant association between Kawasaki disease and diagnosis of autistic disorder.

  1. Discovering Disease Associations by Integrating Electronic Clinical Data and Medical Literature

    PubMed Central

    Holmes, Antony B.; Hawson, Alexander; Liu, Feng; Friedman, Carol; Khiabanian, Hossein; Rabadan, Raul

    2011-01-01

    Electronic health record (EHR) systems offer an exceptional opportunity for studying many diseases and their associated medical conditions within a population. The increasing number of clinical record entries that have become available electronically provides access to rich, large sets of patients' longitudinal medical information. By integrating and comparing relations found in the EHRs with those already reported in the literature, we are able to verify existing and to identify rare or novel associations. Of particular interest is the identification of rare disease co-morbidities, where the small numbers of diagnosed patients make robust statistical analysis difficult. Here, we introduce ADAMS, an Application for Discovering Disease Associations using Multiple Sources, which contains various statistical and language processing operations. We apply ADAMS to the New York-Presbyterian Hospital's EHR to combine the information from the relational diagnosis tables and textual discharge summaries with those from PubMed and Wikipedia in order to investigate the co-morbidities of the rare diseases Kaposi sarcoma, toxoplasmosis, and Kawasaki disease. In addition to finding well-known characteristics of diseases, ADAMS can identify rare or previously unreported associations. In particular, we report a statistically significant association between Kawasaki disease and diagnosis of autistic disorder. PMID:21731656

  2. A new spontaneous allele at the pink-eyed dilution (p) locus discovered in Mus musculus castaneus.

    PubMed

    Tsuji, A; Wakayama, T; Ishikawa, A

    1995-10-01

    Mutant mice characterized by a cream coat and pink eyes were spontaneously discovered among the descendants of Indonesian wild mice (Mus musculus castaneus). This mutant phenotype was controlled by a single autosomal recessive gene that was allelic to the pink-eyed dilution (p) gene. The mutant mouse phenotypically resembled the original p mouse which was the first mutant identified at this locus. Nevertheless, these two alleles differed in origin, a previous report suggesting that the original p allele was derived from Japanese wild mice (M. m. molossinus). Thus the symbol pcas (pink-eyed castaneus) was proposed for the present mutation allele.

  3. Discovering significant evolution patterns from satellite image time series.

    PubMed

    Petitjean, François; Masseglia, Florent; Gançarski, Pierre; Forestier, Germain

    2011-12-01

    Satellite Image Time Series (SITS) provide us with precious information on land cover evolution. By studying these series of images we can both understand the changes of specific areas and discover global phenomena that spread over larger areas. Changes that can occur throughout the sensing time can spread over very long periods and may have different start time and end time depending on the location, which complicates the mining and the analysis of series of images. This work focuses on frequent sequential pattern mining (FSPM) methods, since this family of methods fits the above-mentioned issues. This family of methods consists of finding the most frequent evolution behaviors, and is actually able to extract long-term changes as well as short term ones, whenever the change may start and end. However, applying FSPM methods to SITS implies confronting two main challenges, related to the characteristics of SITS and the domain's constraints. First, satellite images associate multiple measures with a single pixel (the radiometric levels of different wavelengths corresponding to infra-red, red, etc.), which makes the search space multi-dimensional and thus requires specific mining algorithms. Furthermore, the non evolving regions, which are the vast majority and overwhelm the evolving ones, challenge the discovery of these patterns. We propose a SITS mining framework that enables discovery of these patterns despite these constraints and characteristics. Our proposal is inspired from FSPM and provides a relevant visualization principle. Experiments carried out on 35 images sensed over 20 years show the proposed approach makes it possible to extract relevant evolution behaviors.

  4. NASA Chandra X-ray Observatory Selected as Editor's Choice in 2000 Discover Magazine Awards for Technological Innovation

    NASA Astrophysics Data System (ADS)

    2000-06-01

    The Chandra X-ray Observatory, NASA's newest and most powerful X-ray space telescope, has been selected as the winner of the Editor's Choice category of the 2000 Discover Magazine Awards for Technological Innovation. The team of government, industry, university and research institutions that designed, built and deployed Chandra for NASA's Marshall Space Flight Center, Huntsville, Ala, will be formally recognized June 24 at a gala awards celebration at Epcot at the Walt Disney World Resort in Orlando, Fl. Dr. Harvey Tananbaum, director of the Smithsonian Astrophysical Observatory's Chandra X-ray Science Center, Cambridge, Mass., which conducts the Chandra science mission for NASA, will receive the award on behalf of the team. "Chandra has opened a new window for astronomers into the universe of high-energy cosmic events such as pulsars, supernova remnants and black holes," said Tananbaum. "We're now able to create spectacularly detailed images of celestial phenomena whose mere existence we could only hypothesize before." Among Chandra's most significant discoveries to date, he lists the detection of a giant ring around the heart of the Crab Nebula, details of the shock wave created by an exploding star and resolution of the high-energy X-ray "glow" in the universe into millions of specific light sources. "The successful launch, deployment and on-orbit operations of NASA's Chandra X-ray Observatory is a testament to the solid partnership between TRW, NASA and the science community that has been enabling NASA's most important space science missions for the past 40 years," said Timothy W. Hannemann, executive vice president and general manager, TRW Space & Electronics Group. "The extraordinary images that Chandra is delivering daily speaks loudly not only to the quality of the science instruments on board, but also to the engineering talents and dedication to mission success exhibited by every member of NASA's Chandra mission team." Chandra, named in honor of Nobel

  5. Discovering geothermal supercritical fluids: a new frontier for seismic exploration.

    PubMed

    Piana Agostinetti, Nicola; Licciardi, Andrea; Piccinini, Davide; Mazzarini, Francesco; Musumeci, Giovanni; Saccorotti, Gilberto; Chiarabba, Claudio

    2017-11-06

    Exploiting supercritical geothermal resources represents a frontier for the next generation of geothermal electrical power plant, as the heat capacity of supercritical fluids (SCF),which directly impacts on energy production, is much higher than that of fluids at subcritical conditions. Reconnaissance and location of intensively permeable and productive horizons at depth is the present limit for the development of SCF geothermal plants. We use, for the first time, teleseismic converted waves (i.e. receiver function) for discovering those horizons in the crust. Thanks to the capability of receiver function to map buried anisotropic materials, the SCF-bearing horizon is seen as the 4km-depth abrupt termination of a shallow, thick, ultra-high (>30%) anisotropic rock volume, in the center of the Larderello geothermal field. The SCF-bearing horizon develops within the granites of the geothermal field, bounding at depth the vapor-filled heavily-fractured rock matrix that hosts the shallow steam-dominated geothermal reservoirs. The sharp termination at depth of the anisotropic behavior of granites, coinciding with a 2 km-thick stripe of seismicity and diffuse fracturing, points out the sudden change in compressibility of the fluid filling the fractures and is a key-evidence of deep fluids that locally traversed the supercritical conditions. The presence of SCF and fracture permeability in nominally ductile granitic rocks open new scenarios for the understanding of magmatic systems and for geothermal exploitation.

  6. Using internet images to gather distributional data for a newly discovered Caloptilia species (Lepidoptera: Gracillariidae) specializing on Chinese tallow in North America

    USDA-ARS?s Scientific Manuscript database

    Chinese tallow tree (Triadica sebifera (L.), Euphorbiaceae) is a noxious and highly invasive species that was deliberately introduced to GA in 1772. In early 2009, an unfamiliar caterpillar was independently discovered feeding on T. sebifera trees in Gainesville, FL and Slidell, LA. Adult moths were...

  7. Improved Photometric Characteristics of the Newly Discovered EW-Type System GSC 04370-00206

    NASA Astrophysics Data System (ADS)

    Breus, V. V.; Andronov, I. L.; Dubovsky, P. A.; Hegedus, T.; Kudzej, I.; Petrik, K.

    2010-12-01

    We present results of two-color photometric study of the newly discovered EW-type eclipsing binary star GSC 04370-00206 in the field of the intermediate polar MU Cam. CCD V,R observations were obtained in the Astronomical Observatories in Hlohovec, Baja and Kolonica in 2007-2009. Improved photometric elements for the primary minimum were determined: Min.BJD=2454805.75635+0.44264511(27)E. The range of the brightness variations is 13.79-14.13 (V) and 13.07-13.44 (R). The accuracy of the period determination is by a factor of ˜ 7, 000 times better than the one published by the discoverers based on only one night of observations. We report on the night-to-night variability of the shape of the light curve which is interpreted by a presence of spots in the atmosphere of one or both components (O'Connel effect).

  8. Serology and cytokine profiles in patients infected with the newly discovered Bundibugyo ebolavirus.

    PubMed

    Gupta, Manisha; MacNeil, Adam; Reed, Zachary D; Rollin, Pierre E; Spiropoulou, Christina F

    2012-02-20

    A new species of Ebolavirus, Bundibugyo ebolavirus, was discovered in an outbreak in western Uganda in November 2007. To study the correlation between fatal infection and immune response in Bundibugyo ebolavirus infection, viral antigen, antibodies, and 17 soluble factors important for innate immunity were examined in 44 patient samples. Using Luminex assays, we found that fatal infection was associated with high levels of viral antigen, low levels of pro-inflammatory cytokines, such as IL-1α, IL-1β, IL-6, TNF-α, and high levels of immunosuppressor cytokines like IL-10. Also, acute infected patients died in spite of generating high levels of antibodies against the virus. Thus, our results imply that disease severity in these patients is not due to the multi-organ failure and septic shock caused by a flood of inflammatory cytokines, as seen in infections with other Ebolavirus species. Published by Elsevier Inc.

  9. First columbellid species (Gastropoda: Buccinoidea) from deep-sea hydrothermal vents, discovered in Okinawa Trough, Japan.

    PubMed

    Chen, Chong; Watanabe, Hiromi Kayama; Araya, Juan Francisco

    2017-12-12

    The molluscan diversity of deep-sea chemosynthetic ecosystems in Japan has been in general well documented with about 80 described species, of which over half are gastropods (Sasaki et al. 2005; Fujikura et al. 2012; Sasaki et al. 2016). Recently, however, a number of novel hydrothermal vent sites were discovered in the area using multibeam echo-sounding (Nakamura et al. 2015), providing opportunities for new discoveries. As a part of ongoing studies documenting the biodiversity of such sites, we present the first record of Columbellidae from hydrothermal vents, with a new species recovered from Natsu and Aki sites, in the Iheya North hydrothermal field (for map and background on the vent field see Nakamura et al. 2015).

  10. Mining a clinical data warehouse to discover disease-finding associations using co-occurrence statistics

    PubMed Central

    Cao, Hui; Markatou, Marianthi; Melton, Genevieve B.; Chiang, Michael F.; Hripcsak, George

    2005-01-01

    This paper applies co-occurrence statistics to discover disease-finding associations in a clinical data warehouse. We used two methods, χ2 statistics and the proportion confidence interval (PCI) method, to measure the dependence of pairs of diseases and findings, and then used heuristic cutoff values for association selection. An intrinsic evaluation showed that 94 percent of disease-finding associations obtained by χ2 statistics and 76.8 percent obtained by the PCI method were true associations. The selected associations were used to construct knowledge bases of disease-finding relations (KB-χ2, KB-PCI). An extrinsic evaluation showed that both KB-χ2 and KB-PCI could assist in eliminating clinically non-informative and redundant findings from problem lists generated by our automated problem list summarization system. PMID:16779011

  11. Mining a clinical data warehouse to discover disease-finding associations using co-occurrence statistics.

    PubMed

    Cao, Hui; Markatou, Marianthi; Melton, Genevieve B; Chiang, Michael F; Hripcsak, George

    2005-01-01

    This paper applies co-occurrence statistics to discover disease-finding associations in a clinical data warehouse. We used two methods, chi2 statistics and the proportion confidence interval (PCI) method, to measure the dependence of pairs of diseases and findings, and then used heuristic cutoff values for association selection. An intrinsic evaluation showed that 94 percent of disease-finding associations obtained by chi2 statistics and 76.8 percent obtained by the PCI method were true associations. The selected associations were used to construct knowledge bases of disease-finding relations (KB-chi2, KB-PCI). An extrinsic evaluation showed that both KB-chi2 and KB-PCI could assist in eliminating clinically non-informative and redundant findings from problem lists generated by our automated problem list summarization system.

  12. Talkoot Portals: Discover, Tag, Share, and Reuse Collaborative Science Workflows (Invited)

    NASA Astrophysics Data System (ADS)

    Wilson, B. D.; Ramachandran, R.; Lynnes, C.

    2009-12-01

    A small but growing number of scientists are beginning to harness Web 2.0 technologies, such as wikis, blogs, and social tagging, as a transformative way of doing science. These technologies provide researchers easy mechanisms to critique, suggest and share ideas, data and algorithms. At the same time, large suites of algorithms for science analysis are being made available as remotely-invokable Web Services, which can be chained together to create analysis workflows. This provides the research community an unprecedented opportunity to collaborate by sharing their workflows with one another, reproducing and analyzing research results, and leveraging colleagues’ expertise to expedite the process of scientific discovery. However, wikis and similar technologies are limited to text, static images and hyperlinks, providing little support for collaborative data analysis. A team of information technology and Earth science researchers from multiple institutions have come together to improve community collaboration in science analysis by developing a customizable “software appliance” to build collaborative portals for Earth Science services and analysis workflows. The critical requirement is that researchers (not just information technologists) be able to build collaborative sites around service workflows within a few hours. We envision online communities coming together, much like Finnish “talkoot” (a barn raising), to build a shared research space. Talkoot extends a freely available, open source content management framework with a series of modules specific to Earth Science for registering, creating, managing, discovering, tagging and sharing Earth Science web services and workflows for science data processing, analysis and visualization. Users will be able to author a “science story” in shareable web notebooks, including plots or animations, backed up by an executable workflow that directly reproduces the science analysis. New services and workflows of

  13. Richest Planetary System Discovered - Up to seven planets orbiting a Sun-like star

    NASA Astrophysics Data System (ADS)

    2010-08-01

    Astronomers using ESO's world-leading HARPS instrument have discovered a planetary system containing at least five planets, orbiting the Sun-like star HD 10180. The researchers also have tantalising evidence that two other planets may be present, one of which would have the lowest mass ever found. This would make the system similar to our Solar System in terms of the number of planets (seven as compared to the Solar System's eight planets). Furthermore, the team also found evidence that the distances of the planets from their star follow a regular pattern, as also seen in our Solar System. "We have found what is most likely the system with the most planets yet discovered," says Christophe Lovis, lead author of the paper reporting the result. "This remarkable discovery also highlights the fact that we are now entering a new era in exoplanet research: the study of complex planetary systems and not just of individual planets. Studies of planetary motions in the new system reveal complex gravitational interactions between the planets and give us insights into the long-term evolution of the system." The team of astronomers used the HARPS spectrograph, attached to ESO's 3.6-metre telescope at La Silla, Chile, for a six-year-long study of the Sun-like star HD 10180, located 127 light-years away in the southern constellation of Hydrus (the Male Water Snake). HARPS is an instrument with unrivalled measurement stability and great precision and is the world's most successful exoplanet hunter. Thanks to the 190 individual HARPS measurements, the astronomers detected the tiny back and forth motions of the star caused by the complex gravitational attractions from five or more planets. The five strongest signals correspond to planets with Neptune-like masses - between 13 and 25 Earth masses [1] - which orbit the star with periods ranging from about 6 to 600 days. These planets are located between 0.06 and 1.4 times the Earth-Sun distance from their central star. "We also have

  14. Homology modeling and virtual screening to discover potent inhibitors targeting the imidazole glycerophosphate dehydratase protein in Staphylococcus xylosus

    NASA Astrophysics Data System (ADS)

    Chen, Xing-Ru; Wang, Xiao-Ting; Hao, Mei-Qi; Zhou, Yong-Hui; Cui, Wen-Qiang; Xing, Xiao-Xu; Xu, Chang-Geng; Bai, Jing-Wen; Li, Yan-Hua

    2017-11-01

    The imidazole glycerophosphate dehydratase (IGPD) protein is a therapeutic target for herbicide discovery. It is also regarded as a possible target in Staphylococcus xylosus (S. xylosus) for solving mastitis in the dairy cow. The 3D structure of IGPD protein is essential for discovering novel inhibitors during high-throughput virtual screening. However, to date, the 3D structure of IGPD protein of S. xylosus has not been solved. In this study, a series of computational techniques including homology modeling, Ramachandran Plots, and Verify 3D were performed in order to construct an appropriate 3D model of IGPD protein of S. xylosus. Nine hits were identified from 2500 compounds by docking studies. Then, these 9 compounds were first tested in vitro in S. xylosus biofilm formation using crystal violet staining. One of the potential compounds, baicalin was shown to significantly inhibit S. xylosus biofilm formation. Finally, the baicalin was further evaluated, which showed better inhibition of biofilm formation capability in S. xylosus by scanning electron microscopy. Hence, we have predicted the structure of IGPD protein of S. xylosus using computational techniques. We further discovered the IGPD protein was targeted by baicalin compound which inhibited the biofilm formation in S. xylosus. Our findings here would provide implications for the further development of novel IGPD inhibitors for the treatment of dairy mastitis.

  15. Homology Modeling and Virtual Screening to Discover Potent Inhibitors Targeting the Imidazole Glycerophosphate Dehydratase Protein in Staphylococcus xylosus.

    PubMed

    Chen, Xing-Ru; Wang, Xiao-Ting; Hao, Mei-Qi; Zhou, Yong-Hui; Cui, Wen-Qiang; Xing, Xiao-Xu; Xu, Chang-Geng; Bai, Jing-Wen; Li, Yan-Hua

    2017-01-01

    The imidazole glycerophosphate dehydratase (IGPD) protein is a therapeutic target for herbicide discovery. It is also regarded as a possible target in Staphylococcus xylosus ( S. xylosus ) for solving mastitis in the dairy cow. The 3D structure of IGPD protein is essential for discovering novel inhibitors during high-throughput virtual screening. However, to date, the 3D structure of IGPD protein of S. xylosus has not been solved. In this study, a series of computational techniques including homology modeling, Ramachandran Plots, and Verify 3D were performed in order to construct an appropriate 3D model of IGPD protein of S. xylosus . Nine hits were identified from 2,500 compounds by docking studies. Then, these nine compounds were first tested in vitro in S. xylosus biofilm formation using crystal violet staining. One of the potential compounds, baicalin was shown to significantly inhibit S. xylosus biofilm formation. Finally, the baicalin was further evaluated, which showed better inhibition of biofilm formation capability in S. xylosus by scanning electron microscopy. Hence, we have predicted the structure of IGPD protein of S. xylosus using computational techniques. We further discovered the IGPD protein was targeted by baicalin compound which inhibited the biofilm formation in S. xylosus . Our findings here would provide implications for the further development of novel IGPD inhibitors for the treatment of dairy mastitis.

  16. TOLNet ozone lidar intercomparison during the discover-aq and frappé campaigns

    NASA Astrophysics Data System (ADS)

    Newchurch, Michael J.; Alvarez, Raul J.; Berkoff, Timothy A.; Carrion, William; DeYoung, Russell J.; Ganoe, Rene; Gronoff, Guillaume; Kirgis, Guillaume; Kuang, Shi; Langford, Andy O.; Leblanc, Thierry; McGee, Thomas J.; Pliutau, Denis; Senff, Christoph; Sullivan, John T.; Sumnicht, Grant; Twigg, Laurence W.; Wang, Lihua

    2018-04-01

    The Tropospheric Ozone Lidar Network (TOLNet) is a unique network of lidar systems that measure atmospheric profiles of ozone and aerosols, to contribute to air-quality studies, atmospheric modeling, and satellite validation efforts. The accurate characterization of these lidars is of critical interest, and is necessary to determine cross-instrument calibration uniformity. From July to August 2014, three lidars, the TROPospheric OZone (TROPOZ) lidar, the Tunable Optical Profiler for Aerosol and oZone (TOPAZ) lidar, and the Langley Mobile Ozone Lidar (LMOL), of TOLNet participated in the "Deriving Information on Surface conditions from Column and Vertically Resolved Observations Relevant to Air Quality" (DISCOVER-AQ) mission and the "Front Range Air Pollution and Photochemistry Éxperiment" (FRAPPÉ) to measure sub-hourly ozone variations from near the surface to the top of the troposphere. Although large differences occur at few individual altitudes in the near field and far field range, the TOLNet lidars agree with each other within ±4%. These results indicate excellent measurement accuracy for the TOLNet lidars that is suitable for use in air-quality and ozone modeling efforts.

  17. Life in the salinity gradient: Discovering mechanisms behind a new biodiversity pattern

    NASA Astrophysics Data System (ADS)

    Telesh, Irena; Schubert, Hendrik; Skarlato, Sergei

    2013-12-01

    A recently discovered paradoxical maximum of planktonic protistan species in the salinity gradient of the Baltic Sea revealed an inverse trend of species number/salinity relation in comparison to the previously accepted species-minimum model for macrozoobenthos. Here, we review long-term data on organisms of different size classes and ecological groups to show that eukaryotic and prokaryotic microbes in plankton demonstrate a maximum species richness in the challenging zone of the critical salinity 5-8, where the large-bodied bottom dwellers (macrozoobenthos, macroalgae and aquatic higher plants) experience large-scale salinity stress which leads to an impoverished diversity. We propose a new conceptual model to explain why the diversity of small, fast-developing, rapidly evolving unicellular plankton organisms benefits from relative vacancy of brackish-water ecological niches and impaired competitiveness therein. The ecotone theory, Hutchinson's Ecological Niche Concept, species-area relationships and the Intermediate Disturbance Hypothesis are considered as a theoretical framework for understanding extinctions, speciation and variations in the evolution rates of different aquatic species in ecosystems with the pronounced salinity gradient.

  18. A novel tree-based algorithm to discover seismic patterns in earthquake catalogs

    NASA Astrophysics Data System (ADS)

    Florido, E.; Asencio-Cortés, G.; Aznarte, J. L.; Rubio-Escudero, C.; Martínez-Álvarez, F.

    2018-06-01

    A novel methodology is introduced in this research study to detect seismic precursors. Based on an existing approach, the new methodology searches for patterns in the historical data. Such patterns may contain statistical or soil dynamics information. It improves the original version in several aspects. First, new seismicity indicators have been used to characterize earthquakes. Second, a machine learning clustering algorithm has been applied in a very flexible way, thus allowing the discovery of new data groupings. Third, a novel search strategy is proposed in order to obtain non-overlapped patterns. And, fourth, arbitrary lengths of patterns are searched for, thus discovering long and short-term behaviors that may influence in the occurrence of medium-large earthquakes. The methodology has been applied to seven different datasets, from three different regions, namely the Iberian Peninsula, Chile and Japan. Reported results show a remarkable improvement with respect to the former version, in terms of all evaluated quality measures. In particular, the number of false positives has decreased and the positive predictive values increased, both of them in a very remarkable manner.

  19. New Variable Stars Discovered by Data Mining Images Taken during Recent Asteroid Photometric Observations. II. Results from July 2015 through December 2016

    NASA Astrophysics Data System (ADS)

    Papini, R.; Marchini, A.; Salvaggio, F.; Agnetti, D.; Bacci, P.; Banfi, M.; Bianciardi, G.; Collina, M.; Franco, L.; Galli, G.; Milani, M. G. A.; Lopresti, C.; Marino, G.; Rizzuti, L.; Ruocco, N.; Quadri, U.

    2017-12-01

    This paper follows the previous publication of new variables discovered at Astronomical Observatory, DSFTA, University of Siena, while observing asteroids in order to determine their rotational periods. Usually, this task requires time series images acquisition on a single field for as long as possible on a few nights not necessarily consecutive. Checking continually this "goldmine" allowed us to discover 57 variable stars not yet listed in catalogues or databases. While most of the new variables are eclipsing binaries, a few belong to the RR Lyrae or delta Scuti class. Since asteroid work is definitely a time-consuming activity, coordinated campaigns of follow-up with other observatories have been fundamental in order to determine the elements of the ephemeris and sometimes the right subclass of variability. Further observations of these new variables are therefore strongly encouraged in order to better characterize these stars, especially pulsating ones whose data combined with those taken during professional surveys seem to suggest the presence of light curve amplitude and period variations.

  20. A novel HPLC-MRM strategy to discover unknown and long-term metabolites of stanozolol for expanding analytical possibilities in doping-control.

    PubMed

    Wang, Zhe; Zhou, Xinmiao; Liu, Xin; Dong, Ying; Zhang, Jinlan

    2017-01-01

    Stanozolol is one of the most commonly abused anabolic androgenic steroids (AAS) by athletes and usually detected by its parent drug and major metabolites. However, its metabolic pathway is complex, varied and individually different, it is important to characterize its overall metabolic profiles and discover new and long-term metabolites for the aims of expanding detection windows. High performance liquid chromatography coupled with triple quadrupole mass spectrometer (HPLC-MS/MS) was used to analyze the human urine after oral administration of stanozolol. Multiple reaction monitoring (MRM), one of the scan modes of triple quadrupole mass spectrometer showing extremely high sensitivity was well used to develop a strategy for metabolic profiles characterization and long-term metabolites detection based on typical precursor to product ion transitions of parent drug and its major metabolites. Utilizing the characteristic fragment ions of stanozolol and its major metabolites as the product ions, and speculating unknown precursor ions based on the possible phase I and phase II metabolic reactions in human body, the metabolite profiles of stanozolol could be comprehensively discovered, especially for those unknown and low concentration metabolites in human urine. Then these metabolites were further well structure identified by targeted high resolution MS/MS scan of quadrupole-time of flight mass spectrometry (Q-TOF). Applying this strategy, 27 phase I and 21 phase II metabolites of stanozolol were identified, in which 13 phase I and 14 phase II metabolites have not been reported previously. The 9 out of 48 metabolites could be detected over 15days post drug administration. This strategy could be employed effectively to characterize AAS metabolic profiles and discover unknown and long-term metabolites in sports drug testing. Copyright © 2016 Elsevier B.V. All rights reserved.

  1. Evidence for a Variable Ultrafast Outflow in the Newly Discovered Ultraluminous Pulsar NGC 300 ULX-1

    NASA Astrophysics Data System (ADS)

    Kosec, P.; Pinto, C.; Walton, D. J.; Fabian, A. C.; Bachetti, M.; Brightman, M.; Fürst, F.; Grefenstette, B. W.

    2018-06-01

    Ultraluminous pulsars are a definite proof that persistent super-Eddington accretion occurs in nature. They support the scenario according to which most Ultraluminous X-ray Sources (ULXs) are super-Eddington accretors of stellar mass rather than sub-Eddington intermediate mass black holes. An important prediction of theories of supercritical accretion is the existence of powerful outflows of moderately ionized gas at mildly relativistic speeds. In practice, the spectral resolution of X-ray gratings such as RGS onboard XMM-Newton is required to resolve their observational signatures in ULXs. Using RGS, outflows have been discovered in the spectra of 3 ULXs (none of which are currently known to be pulsars). Most recently, the fourth ultraluminous pulsar was discovered in NGC 300. Here we report detection of an ultrafast outflow (UFO) in the X-ray spectrum of the object, with a significance of more than 3σ, during one of the two simultaneous observations of the source by XMM-Newton and NuSTAR in December 2016. The outflow has a projected velocity of 65000 km/s (0.22c) and a high ionisation factor with a log value of 3.9. This is the first direct evidence for a UFO in a neutron star ULX and also the first time that this its evidence in a ULX spectrum is seen in both soft and hard X-ray data simultaneously. We find no evidence of the UFO during the other observation of the object, which could be explained by either clumpy nature of the absorber or a slight change in our viewing angle of the accretion flow.

  2. SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.

    PubMed

    Brannan, Kristopher W; Jin, Wenhao; Huelga, Stephanie C; Banks, Charles A S; Gilmore, Joshua M; Florens, Laurence; Washburn, Michael P; Van Nostrand, Eric L; Pratt, Gabriel A; Schwinn, Marie K; Daniels, Danette L; Yeo, Gene W

    2016-10-20

    RNA metabolism is controlled by an expanding, yet incomplete, catalog of RNA-binding proteins (RBPs), many of which lack characterized RNA binding domains. Approaches to expand the RBP repertoire to discover non-canonical RBPs are currently needed. Here, HaloTag fusion pull down of 12 nuclear and cytoplasmic RBPs followed by quantitative mass spectrometry (MS) demonstrates that proteins interacting with multiple RBPs in an RNA-dependent manner are enriched for RBPs. This motivated SONAR, a computational approach that predicts RNA binding activity by analyzing large-scale affinity precipitation-MS protein-protein interactomes. Without relying on sequence or structure information, SONAR identifies 1,923 human, 489 fly, and 745 yeast RBPs, including over 100 human candidate RBPs that contain zinc finger domains. Enhanced CLIP confirms RNA binding activity and identifies transcriptome-wide RNA binding sites for SONAR-predicted RBPs, revealing unexpected RNA binding activity for disease-relevant proteins and DNA binding proteins. Copyright © 2016 Elsevier Inc. All rights reserved.

  3. sp3-hybridized framework structure of group-14 elements discovered by genetic algorithm

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nguyen, Manh Cuong; Zhao, Xin; Wang, Cai-Zhuang

    2014-05-01

    Group-14 elements, including C, Si, Ge, and Sn, can form various stable and metastable structures. Finding new metastable structures of group-14 elements with desirable physical properties for new technological applications has attracted a lot of interest. Using a genetic algorithm, we discovered a new low-energy metastable distorted sp3-hybridized framework structure of the group-14 elements. It has P42/mnm symmetry with 12 atoms per unit cell. The void volume of this structure is as large as 139.7Å3 for Si P42/mnm, and it can be used for gas or metal-atom encapsulation. Band-structure calculations show that P42/mnm structures of Si and Ge are semiconductingmore » with energy band gaps close to the optimal values for optoelectronic or photovoltaic applications. With metal-atom encapsulation, the P42/mnm structure would also be a candidate for rattling-mediated superconducting or used as thermoelectric materials.« less

  4. Merkel Cell Polyomavirus: Molecular Insights into the Most Recently Discovered Human Tumour Virus

    PubMed Central

    Stakaitytė, Gabrielė; Wood, Jennifer J.; Knight, Laura M.; Abdul-Sada, Hussein; Adzahar, Noor Suhana; Nwogu, Nnenna; Macdonald, Andrew; Whitehouse, Adrian

    2014-01-01

    A fifth of worldwide cancer cases have an infectious origin, with viral infection being the foremost. One such cancer is Merkel cell carcinoma (MCC), a rare but aggressive skin malignancy. In 2008, Merkel cell polyomavirus (MCPyV) was discovered as the causative agent of MCC. It is found clonally integrated into the majority of MCC tumours, which require MCPyV oncoproteins to survive. Since its discovery, research has begun to reveal the molecular virology of MCPyV, as well as how it induces tumourigenesis. It is thought to be a common skin commensal, found at low levels in healthy individuals. Upon loss of immunosurveillance, MCPyV reactivates, and a heavy viral load is associated with MCC pathogenesis. Although MCPyV is in many ways similar to classical oncogenic polyomaviruses, such as SV40, subtle differences are beginning to emerge. These unique features highlight the singular position MCPyV has as the only human oncogenic polyomavirus, and open up new avenues for therapies against MCC. PMID:24978434

  5. TIMING AND INTERSTELLAR SCATTERING OF 35 DISTANT PULSARS DISCOVERED IN THE PALFA SURVEY

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nice, D. J.; Altiere, E.; Farrington, D.

    2013-07-20

    We have made extensive observations of 35 distant slow (non-recycled) pulsars discovered in the ongoing Arecibo PALFA pulsar survey. Timing observations of these pulsars over several years at Arecibo Observatory and Jodrell Bank Observatory have yielded high-precision positions and measurements of rotation properties. Despite being a relatively distant population, these pulsars have properties that mirror those of the previously known pulsar population. Many of the sources exhibit timing noise, and one underwent a small glitch. We have used multifrequency data to measure the interstellar scattering properties of these pulsars. We find scattering to be higher than predicted along some linesmore » of sight, particularly in the Cygnus region. Finally, we present XMM-Newton and Chandra observations of the youngest and most energetic of the pulsars, J1856+0245, which has previously been associated with the GeV-TeV pulsar wind nebula HESS J1857+026.« less

  6. A 15.7-Minute AM CVn Binary Discovered in K2

    NASA Astrophysics Data System (ADS)

    Green, M. J.; Hermes, J. J.; Marsh, T. R.; Steeghs, D. T. H.; Bell, Keaton J.; Littlefair, S. P.; Parsons, S. G.; Dennihy, E.; Fuchs, J. T.; Reding, J. S.; Kaiser, B. C.; Ashley, R. P.; Breedt, E.; Dhillon, V. S.; Gentile Fusillo, N. P.; Kerry, P.; Sahman, D. I.

    2018-04-01

    We present the discovery of SDSS J135154.46-064309.0, a short-period variable observed using 30-minute cadence photometry in K2 Campaign 6. Follow-up spectroscopy and high-speed photometry support a classification as a new member of the rare class of ultracompact accreting binaries known as AM CVn stars. The spectroscopic orbital period of 15.65 ± 0.12 minutes makes this system the fourth-shortest period AM CVn known, and the second system of this type to be discovered by the Kepler spacecraft. The K2 data show photometric periods at 15.7306 ± 0.0003 minutes, 16.1121 ± 0.0004 minutes and 664.82 ± 0.06 minutes, which we identify as the orbital period, superhump period, and disc precession period, respectively. From the superhump and orbital periods we estimate the binary mass ratio q = M2/M1 = 0.111 ± 0.005, though this method of mass ratio determination may not be well calibrated for helium-dominated binaries. This system is likely to be a bright foreground source of gravitational waves in the frequency range detectable by LISA, and may be of use as a calibration source if future studies are able to constrain the masses of its stellar components.

  7. A 15.7-minAM CVn binary discovered in K2

    NASA Astrophysics Data System (ADS)

    Green, M. J.; Hermes, J. J.; Marsh, T. R.; Steeghs, D. T. H.; Bell, Keaton J.; Littlefair, S. P.; Parsons, S. G.; Dennihy, E.; Fuchs, J. T.; Reding, J. S.; Kaiser, B. C.; Ashley, R. P.; Breedt, E.; Dhillon, V. S.; Gentile Fusillo, N. P.; Kerry, P.; Sahman, D. I.

    2018-07-01

    We present the discovery of SDSS J135154.46-064309.0, a short-period variable observed using 30-mincadence photometry in K2 Campaign 6. Follow-up spectroscopy and high-speed photometry support a classification as a new member of the rare class of ultracompact accreting binaries known as AM CVn stars. The spectroscopic orbital period of 15.65 ± 0.12 min makes this system the fourth-shortest-period AM CVn known, and the second system of this type to be discovered by the Kepler spacecraft. The K2 data show photometric periods at 15.7306 ± 0.0003 min, 16.1121 ± 0.0004 min, and 664.82 ± 0.06 min, which we identify as the orbital period, superhump period, and disc precession period, respectively. From the superhump and orbital periods we estimate the binary mass ratio q = M2/M1= 0.111 ± 0.005, though this method of mass ratio determination may not be well calibrated for helium-dominated binaries. This system is likely to be a bright foreground source of gravitational waves in the frequency range detectable by Laser Interferometer Space Antenna, and may be of use as a calibration source if future studies are able to constrain the masses of its stellar components.

  8. [Case of lymphangioleiomyomatosis (LAM) discovered during cesarean section under spinal anesthesia].

    PubMed

    Nakanishi, Mika; Okura, Nahomi; Kashii, Tomoko; Matsushita, Mitsuji; Mori, Masanobu; Yoshida, Masayo; Tsujimura, Shigehisa

    2014-02-01

    We experienced a case of scheduled cesarean section under spinal anesthesia in a patient with LAM which had been missed in spite of preoperative medical examination and consultation with specialists but discovered because of perioperative hypoxia A 35-year-old woman, Gravida 1 Para 0, with breech presentation was scheduled to undergo cesarean section under spinal anesthesia at 38 weeks of gestation. She had no history of asthma or abnormal findings at annual medical examination. She had suffered from dry cough and nocturnal dyspnea for 7 weeks and an inhaled bronchodilator was administered with diagnosis of inflammatory airway disease by her respiratory physicians. Spinal anesthesia was performed with bupivacaine 12.5 mg. At the beginning of anesthesia SPO2 was 97% in supine position, but it rapidly decreased to less than 90% and 3 l x min(-1) oxygen was supplied with a facial mask. The anesthetic level was thoracal 4 bilaterally and her breathing was stable. The circulatory state, Apgar score and other vital signs were within normal ranges. Postoperative chest X-ray showed bilateral numerous grained spots and computed tomography scans showed multiple thin-walled cysts. The characteristic history and the fluoroscopic data gave her clinical diagnosis of LAM.

  9. Discovering the flight autostabilizer of fruit flies by inducing aerial stumbles.

    PubMed

    Ristroph, Leif; Bergou, Attila J; Ristroph, Gunnar; Coumes, Katherine; Berman, Gordon J; Guckenheimer, John; Wang, Z Jane; Cohen, Itai

    2010-03-16

    Just as the Wright brothers implemented controls to achieve stable airplane flight, flying insects have evolved behavioral strategies that ensure recovery from flight disturbances. Pioneering studies performed on tethered and dissected insects demonstrate that the sensory, neurological, and musculoskeletal systems play important roles in flight control. Such studies, however, cannot produce an integrative model of insect flight stability because they do not incorporate the interaction of these systems with free-flight aerodynamics. We directly investigate control and stability through the application of torque impulses to freely flying fruit flies (Drosophila melanogaster) and measurement of their behavioral response. High-speed video and a new motion tracking method capture the aerial "stumble," and we discover that flies respond to gentle disturbances by accurately returning to their original orientation. These insects take advantage of a stabilizing aerodynamic influence and active torque generation to recover their heading to within 2 degrees in < 60 ms. To explain this recovery behavior, we form a feedback control model that includes the fly's ability to sense body rotations, process this information, and actuate the wing motions that generate corrective aerodynamic torque. Thus, like early man-made aircraft and modern fighter jets, the fruit fly employs an automatic stabilization scheme that reacts to short time-scale disturbances.

  10. Prospects for discovering pulsars in future continuum surveys using variance imaging

    NASA Astrophysics Data System (ADS)

    Dai, S.; Johnston, S.; Hobbs, G.

    2017-12-01

    In our previous paper, we developed a formalism for computing variance images from standard, interferometric radio images containing time and frequency information. Variance imaging with future radio continuum surveys allows us to identify radio pulsars and serves as a complement to conventional pulsar searches that are most sensitive to strictly periodic signals. Here, we carry out simulations to predict the number of pulsars that we can uncover with variance imaging in future continuum surveys. We show that the Australian SKA Pathfinder (ASKAP) Evolutionary Map of the Universe (EMU) survey can find ∼30 normal pulsars and ∼40 millisecond pulsars (MSPs) over and above the number known today, and similarly an all-sky continuum survey with SKA-MID can discover ∼140 normal pulsars and ∼110 MSPs with this technique. Variance imaging with EMU and SKA-MID will detect pulsars with large duty cycles and is therefore a potential tool for finding MSPs and pulsars in relativistic binary systems. Compared with current pulsar surveys at high Galactic latitudes in the Southern hemisphere, variance imaging with EMU and SKA-MID will be more sensitive, and will enable detection of pulsars with dispersion measures between ∼10 and 100 cm-3 pc.

  11. Discover the Cosmos - Bringing Cutting Edge Science to Schools across Europe

    NASA Astrophysics Data System (ADS)

    Doran, Rosa

    2015-03-01

    The fast growing number of science data repositories is opening enormous possibilities to scientists all over the world. The emergence of citizen science projects is engaging in science discovery a large number of citizens globally. Astronomical research is now a possibility to anyone having a computer and some form of data access. This opens a very interesting and strategic possibility to engage large audiences in the making and understanding of science. On another perspective it would be only natural to imagine that soon enough data mining will be an active part of the academic path of university or even secondary schools students. The possibility is very exciting but the road not very promising. Even in the most developed nations, where all schools are equipped with modern ICT facilities the use of such possibilities is still a very rare episode. The Galileo Teacher Training Program GTTP, a legacy of IYA2009, is participating in some of the most emblematic projects funded by the European Commission and targeting modern tools, resources and methodologies for science teaching. One of this projects is Discover the Cosmos which is aiming to target this issue by empowering educators with the necessary skills to embark on this innovative path: teaching science while doing science.

  12. Discovering the flight autostabilizer of fruit flies by inducing aerial stumbles

    PubMed Central

    Ristroph, Leif; Bergou, Attila J.; Ristroph, Gunnar; Coumes, Katherine; Berman, Gordon J.; Guckenheimer, John; Wang, Z. Jane; Cohen, Itai

    2010-01-01

    Just as the Wright brothers implemented controls to achieve stable airplane flight, flying insects have evolved behavioral strategies that ensure recovery from flight disturbances. Pioneering studies performed on tethered and dissected insects demonstrate that the sensory, neurological, and musculoskeletal systems play important roles in flight control. Such studies, however, cannot produce an integrative model of insect flight stability because they do not incorporate the interaction of these systems with free-flight aerodynamics. We directly investigate control and stability through the application of torque impulses to freely flying fruit flies (Drosophila melanogaster) and measurement of their behavioral response. High-speed video and a new motion tracking method capture the aerial “stumble,” and we discover that flies respond to gentle disturbances by accurately returning to their original orientation. These insects take advantage of a stabilizing aerodynamic influence and active torque generation to recover their heading to within 2° in < 60 ms. To explain this recovery behavior, we form a feedback control model that includes the fly’s ability to sense body rotations, process this information, and actuate the wing motions that generate corrective aerodynamic torque. Thus, like early man-made aircraft and modern fighter jets, the fruit fly employs an automatic stabilization scheme that reacts to short time-scale disturbances. PMID:20194789

  13. The origin of the argonium emission discovered in the Crab Nebula

    NASA Astrophysics Data System (ADS)

    Priestley, Felix; Barlow, Mike; Viti, Serena

    2016-06-01

    We present a study of the origin of the argonium (ArH+) emission discovered by Herschel in the Crab Nebula (Barlow et al. 2013). The argonium molecule is believed to be formed principally by the reaction of singly ionised argon (Ar+) with molecular hydrogen (H2), and to be destroyed by reactions with H2 and UV photons. For the case of the argonium ground state absorption lines seen by Herschel along several interstellar sightlines (Schilke et al. 2014), those authors argued that the presence of H2 in both the formation and destruction mechanisms means that ArH+ must form in largely atomic interstellar hydrogen clouds containing only trace amounts of H2. However, In the case of the Crab Nebula the observed argonium emission might originate either from transition regions containing both Ar+ and H2, or alternatively from inside the Crab Nebula's H2 knots into which X-ray photons or charged particles from the pulsar wind nebula have penetrated to produce Ar+ and other ions. We report the results of our numerical studies that have used a combination of photoionisation and photodissociation region codes to investigate these alternative scenarios for producing ArH+ in the Crab Nebula.

  14. Galactic supernova remnant candidates discovered by THOR

    NASA Astrophysics Data System (ADS)

    Anderson, L. D.; Wang, Y.; Bihr, S.; Rugel, M.; Beuther, H.; Bigiel, F.; Churchwell, E.; Glover, S. C. O.; Goodman, A. A.; Henning, Th.; Heyer, M.; Klessen, R. S.; Linz, H.; Longmore, S. N.; Menten, K. M.; Ott, J.; Roy, N.; Soler, J. D.; Stil, J. M.; Urquhart, J. S.

    2017-09-01

    Context. There is a considerable deficiency in the number of known supernova remnants (SNRs) in the Galaxy compared to that expected. This deficiency is thought to be caused by a lack of sensitive radio continuum data. Searches for extended low-surface brightness radio sources may find new Galactic SNRs, but confusion with the much larger population of H II regions makes identifying such features challenging. SNRs can, however, be separated from H II regions using their significantly lower mid-infrared (MIR) to radio continuum intensity ratios. Aims: Our goal is to find missing SNR candidates in the Galactic disk by locating extended radio continuum sources that lack MIR counterparts. Methods: We use the combination of high-resolution 1-2 GHz continuum data from The HI, OH, Recombination line survey of the Milky Way (THOR) and lower-resolution VLA 1.4 GHz Galactic Plane Survey (VGPS) continuum data, together with MIR data from the Spitzer GLIMPSE, Spitzer MIPSGAL, and WISE surveys to identify SNR candidates. To ensure that the candidates are not being confused with H II regions, we exclude radio continuum sources from the WISE Catalog of Galactic H II Regions, which contains all known and candidate H II regions in the Galaxy. Results: We locate 76 new Galactic SNR candidates in the THOR and VGPS combined survey area of 67.4° > ℓ > 17.5°, | b | ≤ 1.25° and measure the radio flux density for 52 previously-known SNRs. The candidate SNRs have a similar spatial distribution to the known SNRs, although we note a large number of new candidates near ℓ ≃ 30°, the tangent point of the Scutum spiral arm. The candidates are on average smaller in angle compared to the known regions, 6.4' ± 4.7' versus 11.0' ± 7.8', and have lower integrated flux densities. Conclusions: The THOR survey shows that sensitive radio continuum data can discover a large number of SNR candidates, and that these candidates can be efficiently identified using the combination of radio and

  15. Uncloaking a cryptic, threatened rail with molecular markers: origins, connectivity and demography of a recently-discovered population

    USGS Publications Warehouse

    Girard, Philippe; Takekawa, John Y.; Beissinger, Steven R.

    2010-01-01

    The threatened California Black Rail lives under dense marsh vegetation, is rarely observed, flies weakly and has a highly disjunct distribution. The largest population of rails is found in 8–10 large wetlands in San Francisco Bay (SF Bay), but a population was recently discovered in the foothills of the Sierra Nevada Mountains (Foothills), within a wetland network comprised of over 200 small marshes. Using microsatellite and mitochondrial analyses, our objectives were to determine the origins, connectivity and demography of this recently-discovered population. Analyses of individuals from the Foothills (n = 31), SF Bay (n = 31), the Imperial Valley (n = 6) and the East Coast (n = 3), combined with rigorous power evaluations, provided valuable insights into past history and current dynamics of the species in Northern California that challenge conventional wisdom about the species. The Foothills and SF Bay populations have diverged strongly from the Imperial Valley population, even more strongly than from individuals of the East Coast subspecies. The data also suggest a historical presence of the species in the Foothills. The SF Bay and Foothills populations had similar estimated effective population size over the areas sampled and appeared linked by a strongly asymmetrical migration pattern, with a greater probability of movement from the Foothills to SF Bay than vice versa. Random mating was inferred in the Foothills, but local substructure among marshes and inbreeding were detected in SF Bay, suggesting different dispersal patterns within each location. The unexpected dimensions of Black Rail demography and population structure suggested by these analyses and their potential importance for management are discussed.

  16. Eight γ-Ray Pulsars Discovered In Blind Frequency Searches Of Fermi Lat Data

    DOE PAGES

    Saz Parkinson, P. M.; Dormody, M.; Ziegler, M.; ...

    2010-11-19

    We report the discovery of eight γ-ray pulsars in blind frequency searches of ~650 source positions using the Large Area Telescope (LAT), on board the Fermi Gamma-ray Space Telescope. We present the timing models, light curves, and detailed spectral parameters of the new pulsars. PSRs J1023-5746, J1044-5737, J1413-5205, J1429-5911, and J1954+2836 are young (τ c < 100 kyr), energetic (more » $$\\dot{E} \\gtrsim 10^{36}$$ erg s–1), and located within the Galactic plane (|b| < 3°). The remaining three pulsars, PSRs J1846+0919, J1957+5033, and J2055+25, are less energetic, and located off the plane. Five pulsars are associated with sources included in the Fermi-LAT bright γ-ray source list, but only one, PSR J1413–6205, is clearly associated with an EGRET source. PSR J1023–5746 has the smallest characteristic age (τ c = 4.6 kyr) and is the most energetic ($$\\dot{E} = 1.1 \\times 10^{37}$$ erg s–1) of all γ-ray pulsars discovered so far in blind searches. By analyzing >100 ks of publicly available archival Chandra X-ray data, we have identified the likely counterpart of PSR J1023–5746 as a faint, highly absorbed source, CXOU J102302.8-574606. The large X-ray absorption indicates that this could be among the most distant γ-ray pulsars detected so far. PSR J1023–5746 is positionally coincident with the TeV source HESS J1023–575, located near the young stellar cluster Westerlund 2, while PSR J1954+2836 is coincident with a 4.3σ excess reported by Milagro at a median energy of 35 TeV. PSRs J1957+5033 and J2055+25 have the largest characteristic ages (τ c ~ 1 Myr) and are the least energetic ($$\\dot{E} \\sim 5\\times 10^{33}$$ erg s–1) of the newly discovered pulsars. We used recent XMM observations to identify the counterpart of PSR J2055+25 as XMMU J205549.4+253959. Deep radio follow-up observations of the eight pulsars resulted in no detections of pulsations and upper limits comparable to the faintest known radio pulsars, indicating that these

  17. The solar wind - Moon interaction discovered by MAP-PACE on KAGUYA

    NASA Astrophysics Data System (ADS)

    Saito, Y.; Yokota, S.; Tanaka, T.; Asamura, K.; Nishino, M. N.; Yamamoto, T.; Tsunakawa, H.; Shibuya, H.; Shimizu, H.; Takahashi, F.

    2009-12-01

    Magnetic field And Plasma experiment - Plasma energy Angle and Composition Experiment (MAP-PACE) on KAGUYA (SELENE) completed its ˜1.5-year observation of the low energy charged particles around the Moon. SELENE was successfully launched on 14 September 2007 by H2A launch vehicle from Tanegashima Space Center in Japan. SELENE was inserted into a circular lunar polar orbit of 100km altitude and continued observation for nearly 1.5 years till it impacted the Moon on 10 June 2009. During the last 5 months, the orbit was lowered to ˜50km-altitude between January 2009 and April 2009, and some orbits had further lower perilune altitude of ˜10km after April 2009. The newly observed data showed characteristic ion distributions around the Moon. Besides the solar wind, one of the MAP-PACE sensors MAP-PACE-IMA (Ion Mass Analyzer) discovered four clearly distinguishable ion distributions on the dayside of the Moon: 1) Solar wind ions backscattered at the lunar surface, 2) Solar wind ions reflected by magnetic anomalies on the lunar surface, 3) Ions that are originating from the reflected / backscattered solar wind ions and are pick-up accelerated by the solar wind convection electric field, and 4) Ions originating from the lunar surface / lunar atmosphere. One of the most important discoveries of the ion mass spectrometer (MAP-PACE-IMA) is the first in-situ measurements of the alkali ions originating from the Moon surface / atmosphere. The ions generated on the lunar surface by solar wind sputtering, solar photon stimulated desorption, or micro-meteorite vaporization are accelerated by the solar wind convection electric field and detected by IMA. The mass profiles of these ions show ions including He+, C+, O+, Na+, and K+/Ar+. The heavy ions were also observed when the Moon was in the Earth’s magnetotail where no solar wind ions impinged on the lunar surface. This discovery strongly restricts the possible generation mechanisms of the ionized alkali atmosphere around the

  18. Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity

    PubMed Central

    Johnson, Shannon; Tunnicliffe, Verena; Caress, David; Clague, David; Escobar, Elva; Lundsten, Lonny; Paduan, Jennifer B.; Rouse, Greg; Salcedo, Diana L.; Soto, Luis A.; Zierenberg, Robert; Vrijenhoek, Robert

    2017-01-01

    Hydrothermal vent communities are distributed along mid-ocean spreading ridges as isolated patches. While distance is a key factor influencing connectivity among sites, habitat characteristics are also critical. The Pescadero Basin (PB) and Alarcón Rise (AR) vent fields, recently discovered in the southern Gulf of California, are bounded by previously known vent localities (e.g. Guaymas Basin and 21° N East Pacific Rise); yet, the newly discovered vents differ markedly in substrata and vent fluid attributes. Out of 116 macrofaunal species observed or collected, only three species are shared among all four vent fields, while 73 occur at only one locality. Foundation species at basalt-hosted sulfide chimneys on the AR differ from the functional equivalents inhabiting sediment-hosted carbonate chimneys in the PB, only 75 km away. The dominant species of symbiont-hosting tubeworms and clams, and peripheral suspension-feeding taxa, differ between the sites. Notably, the PB vents host a limited and specialized fauna in which 17 of 26 species are unknown at other regional vents and many are new species. Rare sightings and captured larvae of the ‘missing’ species revealed that dispersal limitation is not responsible for differences in community composition at the neighbouring vent localities. Instead, larval recruitment-limiting habitat suitability probably favours species differentially. As scenarios develop to design conservation strategies around mining of seafloor sulfide deposits, these results illustrate that models encompassing habitat characteristics are needed to predict metacommunity structure. PMID:28724734

  19. Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity.

    PubMed

    Goffredi, Shana K; Johnson, Shannon; Tunnicliffe, Verena; Caress, David; Clague, David; Escobar, Elva; Lundsten, Lonny; Paduan, Jennifer B; Rouse, Greg; Salcedo, Diana L; Soto, Luis A; Spelz-Madero, Ronald; Zierenberg, Robert; Vrijenhoek, Robert

    2017-07-26

    Hydrothermal vent communities are distributed along mid-ocean spreading ridges as isolated patches. While distance is a key factor influencing connectivity among sites, habitat characteristics are also critical. The Pescadero Basin (PB) and Alarcón Rise (AR) vent fields, recently discovered in the southern Gulf of California, are bounded by previously known vent localities (e.g. Guaymas Basin and 21° N East Pacific Rise); yet, the newly discovered vents differ markedly in substrata and vent fluid attributes. Out of 116 macrofaunal species observed or collected, only three species are shared among all four vent fields, while 73 occur at only one locality. Foundation species at basalt-hosted sulfide chimneys on the AR differ from the functional equivalents inhabiting sediment-hosted carbonate chimneys in the PB, only 75 km away. The dominant species of symbiont-hosting tubeworms and clams, and peripheral suspension-feeding taxa, differ between the sites. Notably, the PB vents host a limited and specialized fauna in which 17 of 26 species are unknown at other regional vents and many are new species. Rare sightings and captured larvae of the 'missing' species revealed that dispersal limitation is not responsible for differences in community composition at the neighbouring vent localities. Instead, larval recruitment-limiting habitat suitability probably favours species differentially. As scenarios develop to design conservation strategies around mining of seafloor sulfide deposits, these results illustrate that models encompassing habitat characteristics are needed to predict metacommunity structure. © 2017 The Authors.

  20. Discover cervical disc arthroplasty versus anterior cervical discectomy and fusion in symptomatic cervical disc diseases: A meta-analysis.

    PubMed

    Shangguan, Lei; Ning, Guang-Zhi; Tang, Yu; Wang, Zhe; Luo, Zhuo-Jing; Zhou, Yue

    2017-01-01

    Symptomatic cervical disc disease (SCDD) is a common degenerative disease, and Discover artificial cervical disc, a new-generation nonconstrained artificial disk, has been developed and performed gradually to treat it. We performed this meta-analysis to compare the efficacy and safety between Discover cervical disc arthroplasty (DCDA) and anterior cervical discectomy and fusion (ACDF) for SCDD. An exhaustive literature search of PubMed, EMBASE, and the Cochrane Library was conducted to identify randomized controlled trials that compared DCDA with ACDF for patients suffering SCDD. A random-effect model was used. Results were reported as standardized mean difference or risk ratio with 95% confidence interval. Of 33 articles identified, six studies were included. Compared with ACDF, DCDA demonstrated shorter operation time (P < 0.0001), and better range of motion (ROM) at the operative level (P < 0.00001). But no significant differences were observed in blood loss, neck disability index (NDI) scores, neck and arm pain scores, Japanese orthopaedic association (JOA) scores, secondary surgery procedures and adverse events (P > 0.05). Subgroup analyses did not demonstrated significant differences. In conclusion, DCDA presented shorter operation time, and better ROM at the operative level. However, no significant differences were observed in blood loss, NDI scores, neck and arm pain scores, JOA scores, secondary surgery procedures and adverse events between the two groups. Additionally, more studies of high quality with mid- to long-term follow-up are required in future.

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