Sample records for labile som fractions

  1. Assessing SOC labile fractions through respiration test, density-size fractionation and thermal analysis - A comparison of methods

    NASA Astrophysics Data System (ADS)

    Soucemarianadin, Laure; Cécillon, Lauric; Chenu, Claire; Baudin, François; Nicolas, Manuel; Savignac, Florence; Barré, Pierre

    2017-04-01

    Soil organic matter (SOM) is the biggest terrestrial carbon reservoir, storing 3 to 4 times more carbon than the atmosphere. However, despite its major importance for climate regulation SOM dynamics remains insufficiently understood. For instance, there is still no widely accepted method to assess SOM lability. Soil respiration tests and particulate organic matter (POM) obtained by different fractionation schemes have been used for decades and are now considered as classical estimates of very labile and labile soil organic carbon (SOC), respectively. But the pertinence of these methods to characterize SOM turnover can be questioned. Moreover, they are very time-consuming and their reproducibility might be an issue. Alternate ways of determining the labile SOC component are thus well-needed. Thermal analyses have been used to characterize SOM among which Rock-Eval 6 (RE6) analysis of soil has shown promising results in the determination of SOM biogeochemical stability (Gregorich et al., 2015; Barré et al., 2016). Using a large set of samples of French forest soils representing contrasted pedoclimatic conditions, including deep samples (up to 1 m depth), we compared different techniques used for SOM lability assessment. We explored whether results from soil respiration test (10-week laboratory incubations), SOM size-density fractionation and RE6 thermal analysis were comparable and how they were correlated. A set of 222 (respiration test and RE6), 103 (SOM fractionation and RE6) and 93 (respiration test, SOM fractionation and RE6) forest soils samples were respectively analyzed and compared. The comparison of the three methods (n = 93) using a principal component analysis separated samples from the surface (0-10 cm) and deep (40-80 cm) layers, highlighting a clear effect of depth on the short-term persistence of SOC. A correlation analysis demonstrated that, for these samples, the two classical methods of labile SOC determination (respiration and SOM fractionation

  2. Changes in labile soil organic matter fractions following land use change from monocropping to poplar-based agroforestry systems in a semiarid region of Northeast China.

    PubMed

    Mao, Rong; Zeng, De-Hui; Li, Lu-Jun; Hu, Ya-Lin

    2012-11-01

    Labile fractions of soil organic matter (SOM) respond rapidly to land management practices and can be used as a sensitive indicator of changes in SOM. However, there is little information about the effect of agroforestry practices on labile SOM fractions in semiarid regions of China. In order to test the effects of land use change from monocropping to agroforestry systems on labile SOM fractions, we investigated soil microbial biomass C (MBC) and N, particulate organic matter C (POMC) and N (POMN), as well as total organic C (TOC) and total N (TN) in the 0- to 15-cm and the 15- to 30-cm layers in 4-year-old poplar-based agroforestry systems and adjoining monocropping systems with two different soil textures (sandy loam and sandy clay loam) in a semiarid region of Northeast China. Our results showed that poplar-based agroforestry practices affected soil MBC, POMC, and POMN, albeit there was no significant difference in TOC and TN. Agroforestry practices increased MBC, POMC, and POMN in sandy clay loam soils. However, in sandy loam soils, agroforestry practices only increased MBC and even decreased POMC and POMN at the 0- to 15-cm layer. Our results suggest that labile SOM fractions respond sensitively to poplar-based agroforestry practices and can provide early information about the changes in SOM in semiarid regions of Northeast China and highlight that the effects of agroforestry practices on labile SOM fractions vary with soil texture.

  3. Occurrence and abundance of carbohydrates and amino compounds in sequentially extracted labile soil organic matter fractions.

    USDA-ARS?s Scientific Manuscript database

    This study aimed to investigate the content of carbohydrates and amino compounds in three labile fraction of soil organic matter (SOM). Soil samples were collected from two agricultural fields in southern Italy and the light fraction (LF), the 500–53-µm particulate organic matter (POM) and the mobil...

  4. Labile and Non-labile Soil Carbon Fractions Equally Contributed to Carbon Changes under Long-term Fertilization

    NASA Astrophysics Data System (ADS)

    Liang, F.; Li, J.; Xu, M.; Huang, S.

    2017-12-01

    Soil organic carbon (SOC) storages are altered under long-term fertilization in croplands, it however remains unclear how fast- to slow-cycling SOC fractions each respond to fertilization practices. Based on five two-decade Chinese long-term fertilization experiments (GZL: Gongzhuling; ZZ: Zhengzhou; CQ: Chongqing; JX: Jinxian; QY: Qiyang) under three fertilization treatments (CK: cropping with no fertilizer input; NPK: chemical nitrogen, phosphorus and potassium fertilizers; and NPKM: NPK with manure input), we quantified very labile, labile, non-labile and total SOC stocks at 0-20cm soil depth. Results showed that SOC stocks varied among sites (GZL, JX, CQ > ZZ, QY) and generally increased with fertilizations (CK-1 at ZZ, GZL, QY, CQ and JX, respectively. The corresponding changes of the sum of very labile and labile SOC fractions were 2.6, 2.0, 1.8, 0.8 and -0.5 Mg ha-1 at ZZ, QY, GZL, CQ and JX, respectively. Also, NPKM increased total SOC stock by 18.3, 16.2, 14.4, 10.5, and 6.5 Mg ha-1 at QY, GZL, ZZ, CQ and JX, respectively. The corresponding changes of the sum of very labile and labile SOC fractions were 8.6, 6.8, 6.6, 3.2 and -1.6 Mg ha-1 at QY, GZL, ZZ, CQ and JX, respectively. These results suggested that about half or more than half SOC stock accretions under fertilization were induced by increase in non-labile SOC fractions. It thus informs the importance of non-labile SOC fractions in contributing to soil C sequestration under long-term fertilizations in Chinese croplands. Future research should improve our mechanistic understanding of biogeochemical transformation of non-labile organic C in soils.

  5. Elemental composition and functional groups in soil labile organic matter fractions

    USDA-ARS?s Scientific Manuscript database

    Labile organic matter fractions are major components involved in nutrient cycle in soil. In this chapter, we examine three labile organic matter fraction: light fraction (LF), humic acid (HA) and fulvic acid (HA) in Alabama cotton soils (ultisol) amended with chemical fertilizer (NH4NO3) and poult...

  6. Dual, differential isotope labeling shows the preferential movement of labile plant constituents into mineral-bonded soil organic matter.

    PubMed

    Haddix, Michelle L; Paul, Eldor A; Cotrufo, M Francesca

    2016-06-01

    The formation and stabilization of soil organic matter (SOM) are major concerns in the context of global change for carbon sequestration and soil health. It is presently believed that lignin is not selectively preserved in soil and that chemically labile compounds bonding to minerals comprise a large fraction of the SOM. Labile plant inputs have been suggested to be the main precursor of the mineral-bonded SOM. Litter decomposition and SOM formation are expected to have temperature sensitivity varying with the lability of plant inputs. We tested this framework using dual (13) C and (15) N differentially labeled plant material to distinguish the metabolic and structural components within a single plant material. Big Bluestem (Andropogon gerardii) seedlings were grown in an enriched (13) C and (15) N environment and then prior to harvest, removed from the enriched environment and allowed to incorporate natural abundance (13) C-CO2 and (15) N fertilizer into the metabolic plant components. This enabled us to achieve a greater than one atom % difference in (13) C between the metabolic and structural components within the plant litter. This differentially labeled litter was incubated in soil at 15 and 35 °C, for 386 days with CO2 measured throughout the incubation. After 14, 28, 147, and 386 days of incubation, the soil was subsequently fractionated. There was no difference in temperature sensitivity of the metabolic and structural components with regard to how much was respired or in the amount of litter biomass stabilized. Only the metabolic litter component was found in the sand, silt, or clay fraction while the structural component was exclusively found in the light fraction. These results support the stabilization framework that labile plant components are the main precursor of mineral-associated organic matter. © 2016 John Wiley & Sons Ltd.

  7. Quantification and characterization of chemically-and thermally-labile and recalcitrant biochar fractions.

    PubMed

    Bakshi, Santanu; Banik, Chumki; Laird, David A

    2018-03-01

    The C:N ratios of biochar labile fractions is important for assessing biochar stability and N cycling in soil. Here we compare chemically and thermally labile fractions for nine biochars produced from five biomass feedstocks using four production techniques. Biochar fractionation methods included proximate analysis, hot water extraction, acid and base extractions (0.05 M, 0.5 M, 1 M, 2 M, 3 M, and 6 M of either H 2 SO 4 or NaOH), and oxidation with 15% H 2 O 2 and 0.33 M KMnO 4 (pH 7.2). Results show chemical addition reactions cause underestimation of mass of the labile fraction for chemical extraction and oxidation procedures but not the thermal procedure. Estimates of C and N in labile and recalcitrant fractions were not adversely affected by addition reactions, because solvents were independent of C or N. Results indicate that herbaceous biochars may be a source of N fertility while hardwood biochars may immobilize N during the first few years after biochar application to soils. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Which fraction of soil organic matter is more vulnerable to rhizosphere priming effect?

    NASA Astrophysics Data System (ADS)

    Zhu, B.; Cheng, W.

    2016-12-01

    Rhizosphere priming effect (RPE) is defined as the stimulation or suppression of soil organic matter (SOM) decomposition by living roots. It remains unclear which fraction of SOM is more vulnerable to rhizosphere priming. We conducted two experiments in continuous 13CO2 labeling growth chamber to compare the intensity of RPE for the active (or labile) vs. slow (or recalcitrant) SOM. A sandy loam (Alfisol) was incubated at 20oC and 80% water holding capacity for different periods, which created a gradient in the relative proportion of active vs. slow SOM in the remaining soils. We then grew sunflower (Helianthus annuus) and soybean (Glycine max) in these remaining soils for 50 days under the same environmental conditions to compare the RPE of these two plant species on the decomposition of soils that varied in the lability of SOM. In both experiments, as the incubation proceeded from 1 to 8 to 14 months (in experiment 1) and the soil changed from freshly-sampled soil to two-year-incubated soil (in experiment 2), the intensity of RPE increased significantly even after accounting for the changes in root biomass or root-derived CO2. This result suggests that the slow (or recalcitrant) fraction of SOM is likely more vulnerable to rhizosphere priming compared to the active (or labile) fraction of SOM. Although the underlying mechanisms of this finding await further investigation, our study clearly shows that the main component of SOM (slow or recalcitrant SOM, decadal turnover) is vulnerable to rhizosphere priming. Therefore, the RPE has the potential to substantially regulate both short-term and long-term soil carbon dynamics.

  9. SOM quality and phosphorus fractionation to evaluate degradation organic matter: implications for the restoration of soils after fire

    NASA Astrophysics Data System (ADS)

    Merino, Agustin; Fonturbel, Maria T.; Omil, Beatriz; Chávez-Vergara, Bruno; Fernandez, Cristina; Garcia-Oliva, Felipe; Vega, Jose A.

    2016-04-01

    The design of emergency treatment for the rehabilitation of fire-affected soils requires a quick diagnosis to assess the degree of degradation. For its implication in the erosion and subsequent evolution, the quality of soil organic matter (OM) plays a particularly important role. This paper presents a methodology that combines the visual recognition of the severity of soil burning with the use of simple analytical techniques to assess the degree of degradation of OM. The content and quality of the OM was evaluated in litter and mineral soils using thermogravimetry-differential scanning calorimetry (DSC-TG) spectroscopy, and the results were contrasted with 13C CP-MAS NMR. The types of methodologies were texted to assess the thermal analysis: a) the direct calculation of the Q areas related to three degrees of thermal stabilities: Q1 (200-375 °C; labil OM); Q2 (375-475 °C, recalcitrant OM); and Q3 (475-550 °C). b) deconvolution of DSC curves and calculation of each peak was expressed as a fraction of the total DSC curve area. Additionally, a P fractionation was done following the Hedley sequential extraction method. The severity levels visually showed different degrees of SOM degradation. Although the fire caused important SOM losses in moderate severities, changes in the quality of OM only occurred at higher severities. Besides, the labile organic P fraction decreased and the occluded inorganic P fraction increased in the high severity soils. These changes affect the OM processes such as hydrophobicity and erosion largely responsible for soil degradation post-fire. The strong correlations between the thermal parameters and NMR regions and derived measurements such as hydrophobicity and aromaticity show the usefulness of this technique as rapid diagnosis to assess the soil degradation.The marked loss of polysaccharide and transition to highly thermic-resistant compounds, visible in deconvoluted thermograms, which would explain the changes in microbial activity

  10. Biogeochemical implications of labile phosphorus in forest soils determined by the Hedley fractionation procedure.

    PubMed

    Johnson, Arthur H; Frizano, Jaqueline; Vann, David R

    2003-05-01

    Forest ecologists and biogeochemists have used a variety of extraction techniques to assess labile vs. non-labile soil P pools in chronosequences, the balance between biological vs. geochemical control of P transformations across a wide range of soil orders, the role of plants with either N-fixing or mycorrhizal symbionts in controlling soil P fractions, and to make inferences about plant-available P. Currently, variants of the sequential extraction procedure developed by M. J. Hedley and co-workers afford the greatest discrimination among labile and non-labile organic and inorganic P pools. Results of recent studies that used this technique to evaluate P fractions in forest soils indicate the following: (1) in intact, highly weathered forest soils of the humid tropics, Hedley-labile P values are several times larger than extractable P values resulting from mildly acidic extracting solutions which were commonly used in the past 2 decades; (2) pools of Hedley-labile P are several times larger than the annual forest P requirement and P required from the soil annually in both temperate and tropical forests; (3) long-term trends in non-labile P pools during pedogenesis are adequately represented by the Walker and Syers' model of changes in P fractionation during soil development. However, to better represent trends in pools that can supply plant-available P across forest soils of different age and weathering status, the paradigm should be modified; and (4) across a wide range of tropical and temperate forest soils, organic matter content is an important determinant of Hedley-labile P.

  11. Preservation of labile organic matter in soils of drained thaw lakes in Northern Alaska

    NASA Astrophysics Data System (ADS)

    Mueller, Carsten W.; Rethemeyer, Janet; Kao-Kniffin, Jenny; Löppmann, Sebastian; Hinkel, Kenneth; Bockheim, James

    2014-05-01

    A large number of studies predict changing organic matter (OM) dynamics in arctic soils due to global warming. In contrast to rather slowly altering bulk soil properties, single soil organic matter (SOM) fractions can provide a more detailed picture of the dynamics of differently preserved SOM pools in climate sensitive arctic regions. By the study of the chemical composition of such distinctive SOM fractions using nuclear magnetic resonance spectroscopy (NMR) together with radiocarbon analyses it is possible to evaluate the stability of the major OM pools. Approximately 50-75% of Alaska's Arctic Coastal Plain is covered with thaw lakes and drained thaw lakes that follow a 5,000 yr cycle of development (between creation and final drainage), thus forming a natural soil chronosequence. The drained thaw lakes offer the possibility to study SOM dynamics affected by permafrost processes over millennial timescales. In April 2010 we sampled 16 soil cores (including the active and permanent layer) reaching from young drained lakes (0-50 years since drainage) to ancient drained lakes (3000-5500 years since drainage). Air dried soil samples from soil horizons of the active and permanent layer were subjected to density fractionation in order to differentiate particulate OM and mineral associated OM. The chemical composition of the SOM fractions was analyzed by 13C CPMAS NMR spectroscopy. For a soil core of a young and an ancient drained thaw lake basin we also analyzed the 14C content. For the studied soils we can show that up to over 25 kg OC per square meter are stored mostly as labile, easily degradable organic matter rich in carbohydrates. In contrast only 10 kg OC per square meter were sequestered as presumably more stable mineral associated OC dominated by aliphatic compounds. Comparable to soils of temperate regions, we found small POM (< 20 µm) occluded in aggregated soil structures which differed in the chemical composition from larger organic particles. This was

  12. Microbial control of soil organic matter mineralization responses to labile carbon in subarctic climate change treatments.

    PubMed

    Rousk, Kathrin; Michelsen, Anders; Rousk, Johannes

    2016-12-01

    Half the global soil carbon (C) is held in high-latitude systems. Climate change will expose these to warming and a shift towards plant communities with more labile C input. Labile C can also increase the rate of loss of native soil organic matter (SOM); a phenomenon termed 'priming'. We investigated how warming (+1.1 °C over ambient using open top chambers) and litter addition (90 g m -2  yr -1 ) treatments in the subarctic influenced the susceptibility of SOM mineralization to priming, and its microbial underpinnings. Labile C appeared to inhibit the mineralization of C from SOM by up to 60% within hours. In contrast, the mineralization of N from SOM was stimulated by up to 300%. These responses occurred rapidly and were unrelated to microbial successional dynamics, suggesting catabolic responses. Considered separately, the labile C inhibited C mineralization is compatible with previously reported findings termed 'preferential substrate utilization' or 'negative apparent priming', while the stimulated N mineralization responses echo recent reports of 'real priming' of SOM mineralization. However, C and N mineralization responses derived from the same SOM source must be interpreted together: This suggested that the microbial SOM-use decreased in magnitude and shifted to components richer in N. This finding highlights that only considering SOM in terms of C may be simplistic, and will not capture all changes in SOM decomposition. The selective mining for N increased in climate change treatments with higher fungal dominance. In conclusion, labile C appeared to trigger catabolic responses of the resident microbial community that shifted the SOM mining to N-rich components; an effect that increased with higher fungal dominance. Extrapolating from these findings, the predicted shrub expansion in the subarctic could result in an altered microbial use of SOM, selectively mining it for N-rich components, and leading to a reduced total SOM-use. © 2016 John Wiley

  13. Evaluating Multiple Drivers of Soil Organic Matter Lability and Structure in a Sub-Alpine Forest Ecosystem

    NASA Astrophysics Data System (ADS)

    Hall, E.; Fegel, T. S., II; Boot, C. M.

    2014-12-01

    Aeolian deposition of reactive nitrogen (N) is reaching even the most remote ecosystems. There has been an abundance of research investigating how these subsidies of reactive N may alter fundamental ecosystem characteristics such as soil organic matter (SOM) pool size. Previous studies have reported that additions of reactive N have the potential to both increase and decrease SOM content. While there are a series of different variables that may affect the size of the SOM pool it has been suggested that the lability or recalcitrance of the SOM may be related to its chemical composition (kind and relative abundance of constituent molecules). To address this we sampled 6 experimental plots in a sub-alpine forest in Rocky Mountain National Park (3 control and 3 treated with reactive N for 18 years) during two months in the summers of 2011 and 2012. We found the SOM content of the control plots was greater than that of the experimental plots. To assess lability of each SOM sample we extracted the SOM from each plot with water and incubated the dissolved organic carbon with a common aquatic microbial community from a lake within the watershed. To assess structure of the SOM pool we used ultra performance liquid chromatography (UPLC) coupled with MS of each extract before incubation with the bacterial community. The dissolved component of the SOM showed clear differences in lability both in total quantity and rate of decomposition during incubation with aquatic microorganisms. Principle components analysis indicated season was a stronger driver of DOM composition than fertilization, describing the majority of the variability between July and September 2012. When samples were considered within a season and year there were additional differences in both lability and composition of DOM. Here we evaluate the relative influence of inter- and intra-annual variability and reactive N on both the characteristics and composition of SOM. By linking UPLC-MS with a functional assay of

  14. Forms and Lability of Phosphorus in Humic Acid Fractions of Hord Silt Loam Soil

    USDA-ARS?s Scientific Manuscript database

    Phosphorus (P) has long been known to be present in soil humic fractions, but little is known about specific P forms in humic fractions, or their lability. We extracted the mobile humic acid (MHA) and recalcitrant calcium humate (CaHA) fractions from a Nebraska Hord silt loam soil under continuous c...

  15. Characteristics of labile organic carbon fractions in reclaimed mine soils: Evidence from three reclaimed forests in the Pingshuo opencast coal mine, China.

    PubMed

    Yuan, Ye; Zhao, Zhongqiu; Li, Xuezhen; Wang, Yangyang; Bai, Zhongke

    2018-02-01

    The reclamation of discarded spoils has the potential to stimulate carbon (C) sequestration in reclaimed mine soils (RMSs). Nevertheless, to date the temporal dynamics of labile organic C fractions have not been sufficiently elucidated in RMSs. In this study, soil organic carbon (SOC) and labile organic C fractions, including microbial biomass organic C (MBC), easily oxidizable organic C (EOC) and dissolved organic C (DOC), were determined in Robinia pseudoacacia monoculture forests (reclamation periods of 0, 8, 10, 13, 15, 18 and 30years), Pinus tabuliformis forests (reclamation periods of 0, 10, 19, 23 and 25years) and Ulmus pumila forests (reclamation periods of 0, 18, 20 and 22years) situated on RMSs in the Pingshuo opencast coal mine, China. Changes in labile organic C fractions within the soil profiles (0-100cm) were also identified at the 18- or 19-year plots under the three monoculture forests. Our results showed that, SOC and labile organic C fractions, together with soil microbial quotient (SMQ) and C management index (CMI), increased with time since reclamation, indicating that the quality of RMSs improved over time after initial reclamation under the three forest types. R. pseudoacacia significantly increased the accretion of SOC and EOC in the early stage of reclamation while P. tabuliformis accelerated the accumulation of the MBC fraction. Results for U. pumila indicated that this species had a better ability to store C in RMSs 10years or more after reclamation. SOC and labile organic C fractions both had S-shaped distributions within the soil profiles (0-100cm), with the 0-20cm layer recording the highest values (P<0.05). Labile organic C fractions were closely associated and correlated with soil physicochemical properties; our results also showed that nitrogen played an important role in the development of labile organic C fractions. Overall, reclamation accelerated the accretion of both SOC and labile organic C fractions, results of which varied

  16. Assessment of the labile fractions of copper and zinc in marinas and port areas in Southern Brazil.

    PubMed

    Costa, Luiza Dy Fonseca; Wallner-Kersanach, Mônica

    2013-08-01

    The dissolved labile and labile particulate fractions (LPF) of Cu and Zn were analyzed during different seasons and salinity conditions in estuarine waters of marina, port, and shipyard areas in the southern region of the Patos Lagoon (RS, Brazil). The dissolved labile concentration was determined using the diffusive gradients in thin films technique (DGT). DGT devices were deployed in seven locations of the estuary for 72 h and the physicochemical parameters were also measured. The LPF of Cu and Zn was determined by daily filtering of water samples. Seasonal variation of DGT-Cu concentrations was only significant (p < 0.05) at one shipyard area, while DGT-Zn was significant (p < 0.05) in every locations. The LPF of Cu and Zn concentrations demonstrated seasonal and spatial variability in all locations, mainly at shipyard areas during high salinity conditions. In general, except the control location, the sampling locations showed mean variations of 0.11-0.45 μg L(-1) for DGT-Cu, 0.89-9.96 μg L(-1) for DGT-Zn, 0.65-3.69 μg g(-1) for LPF-Cu, and 1.35-10.87 μg g(-1) for LPF-Zn. Shipyard areas demonstrated the most expressive values of labile Cu and Zn in both fractions. Strong relationship between DGT-Zn and LPF-Zn was found suggesting that the DGT-Zn fraction originates from the suspended particulate matter. Water salinity and suspended particulate matter content indicated their importance for the control of the labile concentrations of Cu and Zn in the water column. These parameters must be taken into consideration for comparison among labile metals in estuaries.

  17. Use of photoacoustic mid-infrared spectroscopy to characterize soil properties and soil organic matter stability

    NASA Astrophysics Data System (ADS)

    Peltre, Clement; Bruun, Sander; Du, Changwen; Stoumann Jensen, Lars

    2014-05-01

    The persistence of soil organic matter (SOM) is recognized as a major ecosystem property due to its key role in earth carbon cycling, soil quality and ecosystem services. SOM stability is typically studied using biological methods such as measuring CO2-C evolution from microbial decomposition of SOM during laboratory incubation or by physical or chemical fractionation methods, allowing the separation of a labile fraction of SOM. However these methods are time consuming and there is still a need for developing reliable techniques to characterize SOM stability, providing both quantitative measurements and qualitative information, in order to improve our understanding of the mechanisms controlling SOM persistence. Several spectroscopic techniques have been used to characterize and predict SOM stability, such as near infrared reflectance spectroscopy (NIRS) and diffuse reflectance mid-infrared spectroscopy (DRIFT). The latter allows a proper identification of spectral regions corresponding to vibrations of specific molecular or functional groups associated with SOM lability. However, reflectance spectroscopy for soil analyses raises some difficulties related to the low reflectance of soils, and to the high influence of particle size. In the last three decades, the progresses in microphone sensitivity dramatically increased the performance of photoacoustic Fourier transform mid-infrared spectroscopy (FTIR-PAS). This technique offers benefits over reflectance spectroscopy techniques, because particle size and the level of sample reflectance have little effect of on the PAS signal, since FTIR-PAS is a direct absorption technique. Despite its high potential for soil analysis, only a limited number of studies have so far applied FTIR-PAS for soil characterization and its potential for determining SOM degradability still needs to be investigated. The objective of this study was to assess the potential of FTIR-PAS for the characterization of SOM decomposability during

  18. Fraction of organic carbon predicts labile desorption rates of chlorinated organic pollutants in laboratory-spiked geosorbents.

    PubMed

    Ginsbach, Jake W; Killops, Kato L; Olsen, Robert M; Peterson, Brittney; Dunnivant, Frank M

    2010-05-01

    The resuspension of large volumes of sediments that are contaminated with chlorinated pollutants continues to threaten environmental quality and human health. Whereas kinetic models are more accurate for estimating the environmental impact of these events, their widespread use is substantially hampered by the need for costly, time-consuming, site-specific kinetics experiments. The present study investigated the development of a predictive model for desorption rates from easily measurable sorbent and pollutant properties by examining the relationship between the fraction of organic carbon (fOC) and labile release rates. Duplicate desorption measurements were performed on 46 unique combinations of pollutants and sorbents with fOC values ranging from 0.001 to 0.150. Labile desorption rate constants indicate that release rates predominantly depend upon the fOC in the geosorbent. Previous theoretical models, such as the macro-mesopore and organic matter (MOM) diffusion model, have predicted such a relationship but could not accurately predict the experimental rate constants collected in the present study. An empirical model was successfully developed to correlate the labile desorption rate constant (krap) to the fraction of organic material where log(krap)=0.291-0.785 . log(fOC). These results provide the first experimental evidence that kinetic pollution releases during resuspension events are governed by the fOC content in natural geosorbents. Copyright (c) 2010 SETAC.

  19. Integrating plant litter quality, soil organic matter stabilization, and the carbon saturation concept

    USDA-ARS?s Scientific Manuscript database

    Recent research suggests labile plant litters promote the stabilization of soil organic matter (SOM) in physico-chemically protected fractions with relatively slow turnover. However, the effect of litter quality on SOM stabilization is inconsistent. Labile, ‘high quality’ litters characterized by hi...

  20. Simultaneous experimental determination of labile proton fraction ratio and exchange rate with irradiation radio frequency power-dependent quantitative CEST MRI analysis.

    PubMed

    Sun, Phillip Zhe; Wang, Yu; Xiao, Gang; Wu, Renhua

    2013-01-01

    Chemical exchange saturation transfer (CEST) imaging is sensitive to dilute proteins/peptides and microenvironmental properties, and has been increasingly evaluated for molecular imaging and in vivo applications. However, the experimentally measured CEST effect depends on the CEST agent concentration, exchange rate and relaxation time. In addition, there may be non-negligible direct radio-frequency (RF) saturation effects, particularly severe for diamagnetic CEST (DIACEST) agents owing to their relatively small chemical shift difference from that of the bulk water resonance. As such, the commonly used asymmetry analysis only provides CEST-weighted information. Recently, it has been shown with numerical simulation that both labile proton concentration and exchange rate can be determined by evaluating the RF power dependence of DIACEST effect. To validate the simulation results, we prepared and imaged two CEST phantoms: a pH phantom of serially titrated pH at a fixed creatine concentration and a concentration phantom of serially varied creatine concentration titrated to the same pH, and solved the labile proton fraction ratio and exchange rate per-pixel. For the concentration phantom, we showed that the labile proton fraction ratio is proportional to the CEST agent concentration with negligible change in the exchange rate. Additionally, we found the exchange rate of the pH phantom is dominantly base-catalyzed with little difference in the labile proton fraction ratio. In summary, our study demonstrated quantitative DIACEST MRI, which remains promising to augment the conventional CEST-weighted MRI analysis. Copyright © 2013 John Wiley & Sons, Ltd.

  1. Constraints on Transport and Emplacement Mechanisms of Labile Fractions in Lunar Cold Traps

    NASA Technical Reports Server (NTRS)

    Rickman, D.; Gertsch, L.

    2014-01-01

    Sustaining the scientific exploration of the Solar System will require a significant proportion of the necessary fuels and propellants, as well as other bulk commodities, to be produced from local raw materials [1]. The viability of mineral production depends on the ability to locate and characterize mineable deposits of the necessary feedstocks. This requires, among other things, a workable understanding of the mechanisms by which such deposits form, which is the subject of Economic Geology. Multiple deposition scenarios are possible for labile materials on the Moon. This paper suggests labile fractions moved diffusely through space; deposits may grow richer with depth until low porosity rock; lateral transport is likely to have occurred with the regolith, at least for short distances; crystalline ice may not exist; the constituent phases could be extremely complex. At present we can constrain the sources only mildly; once on the Moon, the transport mechanisms inherently mix and therefore obscure the origins. However, the importance of expanding our understanding of ore-forming processes on the Moon behooves us to make the attempt. Thus begins a time of new inquiry for Economic Geology.

  2. Assessment of soil organic matter persistence under different land uses applying a physical fractionation procedure

    NASA Astrophysics Data System (ADS)

    Giannetta, Beatrice; Plaza, César; López-de-Sá, Esther G.; Vischetti, Costantino; Zaccone, Claudio

    2017-04-01

    The understanding of the mechanisms involved in the build-up of soil organic matter (SOM) pools with long residence time is tightly linked to the comprehension of C dynamics. Organo-mineral associations are known to be strongly correlated with the accumulation of selective preserved C forms. Adsorption to minerals, as well as occlusion within aggregates, may affect SOM protection in different ways depending on its molecular structure and pedo-climatic conditions. In this research, we investigated changes in quantity and quality of SOM pools characterized by different protection mechanisms in coniferous and broadleaved forest soils, grassland soils, technosols and an agricultural soil with different organic amendments, in order to evaluate the influence of both land use and organic matter nature on physical and/or chemical stabilization of SOM. In particular, free (FR), intra-macroaggregate (MA), intra-microaggregate (MI), and mineral-associated (Min) fractions were separated in order to define physical and chemical mechanisms responsible for the SOM protection against degradation. All these SOM fractions were analyzed for organic C and total N concentration, and their stability assessed by thermogravimetric analysis (TD-TGA). Preliminary data show that, for all land uses, most of the organic C (40-60%) is found in the Min pool, followed by FR (20-40%)>MI MA. With the only exception of the FR, no significant correlations were found between the C/N ratio and a thermal stability index (H550-400/400-250) of each fraction; at the same time, a highly significant and positive correlation was found between these two parameters in all fractions isolated from agricultural soils. In particular, the thermal stability index measured in all Min fractions may be related to the more marked presence of labile compounds in this pool relative to recalcitrant compounds. Conversely, FR OM could not always represent a fresh and readily decomposable fraction.Furthermore, OM associated

  3. Soil organic matter composition affected by potato cropping managements

    USDA-ARS?s Scientific Manuscript database

    Organic matter is a small but important soil component. As a heterogeneous mixture of geomolecules and biomolecules, soil organic matter (SOM) can be fractionated into distinct pools with different solubility and lability. Water extractable organic matter (WEOM) fraction is the most labile and mobil...

  4. Effects of long-term mowing on the fractions and chemical composition of soil organic matter in a semiarid grassland

    NASA Astrophysics Data System (ADS)

    Li, Jiangye; Zhang, Qichun; Li, Yong; Liu, Yimeng; Xu, Jianming; Di, Hongjie

    2017-05-01

    The grassland ecosystem is a significantly important terrestrial carbon pool. Intensive mowing is common to meet the need of increased livestock. However, little information on the quality and quantity of soil organic matter (SOM) under different mowing managements has been documented. In this work, in order to evaluate the impacts of different mowing managements on the quality and quantity of SOM, the fractions and chemical composition of SOM under different mowing managements were determined using traditional fractionation methods and spectroscopy technologies, including advanced nuclear magnetic resonance (NMR) (e.g. cross-polarization magic angle spinning 13C-NMR, CPMAS 13C-NMR) and Fourier-transform infrared (FTIR) based on a 13-year field mowing trial with four treatments: unmown (M0), mowing once every second year (M1/2), mowing once a year (M1) and mowing twice a year (M2). The results showed that compared with M0, M1/2 and M1 significantly enhanced the SOM accumulation and increased the stability of SOM by enhancing humification, while M2 limited SOM accumulation and microbial biomass. Substituted alkyl carbon (C) was the major organic C type in the grassland ecosystem, and it made up over 40 % of the total C. M1/2 and M1 significantly increased stable C functional groups (alkyl C and aromatic C) by degrading labile C functional groups (O-alkyl and carbonyl C) and forming recalcitrant humus, while M2 had opposite effects. The consistent increase in the values of NMR indices reflecting the degradation degree, hydrophobicity and aromaticity of SOM in M1 reflected the fact that M1 had the largest contribution to increasing the stability of SOM, while these values in M2 were similar to those in M0. Significant correlations between different SOM fractions and nitrogen (N) mineralization, and between the contents of different C functional groups and net soil organic nitrogen mineralization or microbial biomass C, indicated that the shifts in SOM fractions and

  5. FTIR-PAS: a powerful tool for characterising the chemical composition and predicting the labile C fraction of various organic waste products.

    PubMed

    Bekiaris, Georgios; Bruun, Sander; Peltre, Clément; Houot, Sabine; Jensen, Lars S

    2015-05-01

    Fourier transform infrared (FT-IR) spectroscopy has been used for several years as a fast, low-cost, reliable technique for characterising a large variety of materials. However, the strong influence of sample particle size and the inability to measure the absorption of very dark and opaque samples have made FTIR unsuitable for many waste materials. FTIR-photoacoustic spectroscopy (FTIR-PAS) can eliminate some of the shortcomings of traditional FTIR caused by scattering effects and reflection issues, and recent advances in PAS technology have made commercial instruments available. In this study, FTIR-PAS was used to characterise a wide range of organic waste products and predict their labile carbon fraction, which is normally determined from time-consuming assays. FTIR-PAS was found to be capable of predicting the labile fraction of carbon as efficiently as near infrared spectroscopy (NIR) and furthermore of identifying the compounds that are correlated with the predicted parameter, thus facilitating a more mechanistic interpretation. Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. [Effects of the different land use on soil labile organic matter and carbon management index in Junyun Mountain].

    PubMed

    Xu, Peng; Jiang, Chang-Sheng; Hao, Qing-Ju; Zhu, Tao

    2013-10-01

    The impacts of different land use on soil organic matter (SOM), soil labile organic matter (SLOM) and their efficiency ratios (ER), and soil carbon management index (CMI) were studied in this study. Subtropical evergreen broad-leaved forest (abbreviation: forest) , sloping farmland, orchard and abandoned land were selected and soils at the depths of 0-10, 10-20, 20-30, 30-40, 40-50 and 50-60 cm were sampled in the spring of 2011 to determine the contents of soil organic matter and labile organic matter. The results showed that the contents of soil organic matter and soil labile organic matter both decreased with the increase of soil depth under all four land use types; however, forest and orchard enriched SOM and SLOM contents in the 0-10 cm and 0-20 cm soil layers, respectively, while the contents of SOM and SLOM decreased evenly in sloping farmland and abandoned land. In the whole soil layer (0-60 cm) , the order of SOM and SLOM contents was abandoned land > forest > orchard > sloping farmland, indicating that at the conversion from forest into orchard or sloping farmland, SOM was reduced by 21.56% (P >0.05) and 55.90% (P <0.05), respectively, and at the conversion from sloping farmland into abandoned land, the low SLOM, middle SLOM and high SLOM increased by 144.2% (P<0.05) , 153.3% (P <0.05) and 242.7% (P <0.05), respectively. There was no significant difference in low ER, middle ER and high ER among the four land uses as suggested by ANOVA which showed that SRs were not sensible to the change of land use. All three CMis were in the order of abandoned land > forest > orchard > sloping farmland, revealing that forest reclamation resulted in the reduction of soil organic carbon storage and the decline of soil quality, and the abandonment of sloping farmland would increase soil carbon sink and improve soil quality. Three kinds of SLOM were all positively correlated with soil total nitrogen, available phosphorus and available potassium, while negatively correlated

  7. Labile rhizosphere soil solution fraction for prediction of bioavailability of heavy metals and rare earth elements to plants.

    PubMed

    Shan, Xiao-Quan; Wang, Zhongwen; Wang, Weisheng; Zhang, Shuzhen; Wen, Bei

    2003-02-01

    A labile rhizosphere soil solution fraction has been recommended to predict the bioavailability of heavy metals and rare earth elements to plants. This method used moist rhizosphere soil in combination with a mixture of 0.01 mol L(-1) of low-molecular-weight organic acids (LMWOAs) as extractant. The extracted soil solutions were fractionated into two colloidal fractions of <0.45 microm (F(3)) and <0.2 microm (F(2)), and one truly dissolved fraction including free metal ions and inorganic and organic complexes (fractionfraction of the truly dissolved fraction refers to labile rhizosphere soil solution fraction, F(lrss). For the soil solutions extracted with a mixture of LMWOAs the concentrations of heavy metals and rare earth elements in F(2) and F(3) were quite similar. However, the mean concentrations of Cr, Ni, Zn, Cu, Pb, Cd, La, Ce, Pr, and Nd in F(lrss) accounted for 79.9%, 91.3%, 90.8%, 60.1%, 77.5%, 75.3%, 81.2%, 77.2%, 80.3%, and 79.5%, respectively, of their concentrations in F(2). In contrast, there were no differences in the extractable metal concentrations between the three fractions while the first step of the method recommended by the European Community of Reference (BCR), where 0.1 mol L(-1) acetic acid was used as an extractant. The single correlation analysis was made between metal concentrations in the different fractions of soil solutions and their concentrations in wheat. If the first step of BCR method was used there was no good correlation between heavy metals in soil pools and that in wheat shoots and roots. When LMWAOs were used a good correlation was obtained between the concentrations of heavy metals in soil pools and that in wheat roots, which followed a general order of r(1 kD, LMWOAs) >r(0.2 microm, LMWOAs) approximately r(0.45 microm, LMWOAs). In the case of rare earth elements the good correlation was obtained for both the wheat roots and shoots. Generally, the correlation coefficients

  8. Estimating soil labile organic carbon and potential turnover rates using a sequential fumigation–incubation procedure.

    Treesearch

    X.M. Zoua; H.H. Ruanc; Y. Fua; X.D. Yanga; L.Q. Sha

    2005-01-01

    Labile carbon is the fraction of soil organic carbon with most rapid turnover times and its oxidation drives the flux of CO2 between soils and atmosphere. Available chemical and physical fractionation methods for estimating soil labile organic carbon are indirect and lack a clear biological definition. We have modified the well-established Jenkinson and Powlson’s...

  9. Determination of the total cadmium, copper, lead and zinc concentrations and their labile species fraction in apple beverages by flow-through anodic stripping chronopotentiometry.

    PubMed

    Jedryczko, Dominika; Pohl, Paweł; Welna, Maja

    2017-06-15

    An analytical procedure for operationally defined speciation of Cd, Cu, Pb and Zn in apple beverages by anodic stripping chronopotentiometry (ASCP) is presented. Optimal measurement conditions were set down to reliably determine the fraction of the labile metals species. The mean total concentrations of Cu, Pb and Zn were 69±20, 7.3±3.3, and 129±59μgL -1 in apple juices, and 18±3, 4.2±0.1, 53±5μgL -1 in apple drinks, respectively. The contributions of the fraction of the ASCP-labile species varied from 43 to 63% (Cu), from 32 to 42% (Pb) and from 38 to 58% (Zn). The Cd content in all analyzed samples was below 0.02μgL -1 . The detection limits (DLs) achieved for Cu, Pb and Zn were 0.04μgL -1 (Cu), 0.02μgL -1 (Pb), and 0.10μgL -1 (Zn). Copyright © 2016 Elsevier Ltd. All rights reserved.

  10. Relationships between soil organic matter pools and nitrous oxide emissions of agroecosystems in the Brazilian Cerrado.

    PubMed

    de Figueiredo, Cícero Célio; de Oliveira, Alexsandra Duarte; Dos Santos, Isis Lima; Ferreira, Eloisa Aparecida Belleza; Malaquias, Juaci Vitoria; de Sá, Marcos Aurélio Carolino; de Carvalho, Arminda Moreira; Dos Santos, João de Deus Gomes

    2018-03-15

    In the Brazilian Cerrado, despite the increasing adoption of no-till systems, there are still extended areas under conventional soil management systems that reduce soil carbon (C) and nitrogen (N) stocks and increase the emissions of greenhouse gases, such as nitrous oxide (N 2 O). Conservation agroecosystems, such as no-till, have been proposed as a strategy to mitigate agriculture-induced climatic changes through reductions in N 2 O emissions. However, the relationship between organic matter and N 2 O emissions from soils under different agroecosystems is not yet clear. This study hypothesized that agroecosystems under no-till promote an accumulation of labile and stable SOM fractions along with a reduction of N 2 O emissions. This study evaluated the effects of crop-rotation agroecosystems: i) on C and N pools and labile and stable SOM fractions; ii) on cumulative N 2 O emissions; and iii) on the relationships between SOM fractions and N 2 O emissions. The agricultural systems consisted of: (I) soybean followed by sorghum under no-tillage (NT1); (II) maize followed by pigeon pea under no-tillage (NT2); (III) soybean under conventional tillage followed by fallow soil (CT); (IV) and native Cerrado (CER). After CT for 18years, following the replacement of CER, the soil C stock in the 0-20cm layer was reduced by 0.64tha -1 year -1 . The no-till systems were more efficient in accumulating labile and stable C fractions with values close to those observed under CER, and were directly related to lower soil N 2 O emissions. The cumulative pattern of N 2 O emissions was inverse to that of the following SOM fractions: microbial biomass carbon, permanganate-oxidizable carbon, particulate organic carbon, inert carbon, and humic substances. Based on principal component analysis, the CT was generally separated from the other land use systems. This separation was strongly influenced by the low C contents in the different SOM fractions and higher N 2 O emissions promoted by the

  11. Quantification of Labile Soil Mercury by Stable Isotope Dilution Techniques

    NASA Astrophysics Data System (ADS)

    Shetaya, Waleed; Huang, Jen-How; Osterwalder, Stefan; Alewell, Christine

    2016-04-01

    Mercury (Hg) is a toxic element that can cause severe health problems to humans. Mercury is emitted to the atmosphere from both natural and anthropogenic sources and can be transported over long distances before it is deposited to aquatic and terrestrial environments. Aside from accumulation in soil solid phases, Hg deposited in soils may migrate to surface- and ground-water or enter the food chain, depending on its lability. There are many operationally-defined extraction methods proposed to quantify soil labile metals. However, these methods are by definition prone to inaccuracies such as non-selectivity, underestimation or overestimation of the labile metal pool. The isotopic dilution technique (ID) is currently the most promising method for discrimination between labile and non-labile metal fractions in soil with a minimum disturbance to soil-solid phases. ID assesses the reactive metal pool in soil by defining the fraction of metal both in solid and solution phases that is isotopically-exchangeable known as the 'E-value'. The 'E-value' represents the metal fraction in a dynamic equilibrium with the solution phase and is potentially accessible to plants. This is carried out by addition of an enriched metal isotope to soil suspensions and quantifying the fraction of metal that is able to freely exchange with the added isotope by measuring the equilibrium isotopic ratio by ICP-MS. E-value (mg kg-1) is then calculated as follows: E-Value = (Msoil/ W) (CspikeVspike/ Mspike) (Iso1IAspike -Iso2IAspikeRss / Iso2IAsoil Rss - Iso1IAsoil) where M is the average atomic mass of the metal in the soil or the spike, W is the mass of soil (kg), Cspike is the concentration of the metal in the spike (mg L-1), Vspike is the volume of spike (L), IA is isotopic abundance, and Rss is the equilibrium ratio of isotopic abundances (Iso1:Iso2). Isotopic dilution has been successfully applied to determine E-values for several elements. However, to our knowledge, this method has not yet

  12. Fractionation and characterization of soil organic carbon during transition to organic farming

    NASA Astrophysics Data System (ADS)

    Abdelrahman, H.; Olk, D.; Cocozza, C.; Miano, T.

    2012-04-01

    The transition from conventional to organic farming is the most difficult period faced by organic growers as it could be characterized by unstable conditions, such as nutrient availability, production reductions, mineralization extents. As soil organic matter (SOM), specifically soil organic carbon (SOC), is known to play important roles in maintenance and improvement of many soil properties, it is important to define its changes during the transition period. Total SOC might not be the suitable tool to track the changes in organically based soil fertility within a 3- to 5-yr transition period. Labile fractions that are important for nutrient cycling and supply are likely to be controlled by management to a much greater extent than is total SOM. Two field experiments, in south of Italy, were established in 2009 to study the changes in SOC during transition to organic farming. Experiments included a cereal/leguminous rotation with triplicates treatments of permitted amendments (compost and fertilizers). Soils were sampled at the beginning of the project, and after each crop harvest in 2010 and 2011. A sequential fractionation procedure was used to separate different SOC-fractions: light fraction (LF), two size classes of particulate organic matter (POM), mobile humic acid (MHA) and Ca++ bound humic acid (CaHA). Isolated fractions were quantified and analyzed for their content of C, N, carbohydrates and amino compounds fingerprints. The obtained results showed that compost application contributed to significantly higher quantities of LF, POM and MHA than did fertilizers application. Carbohydrates content decreased in LF while increased noticeably in POM and slightly in MHA fractions, which indicates that decomposing materials are converted, within the time span of humification, from young fractions into more mature fractions. Amino compounds were found to provide up to 40% of total soil N with a major contribution of the humified fractions, MHA and CaHA. The utilized

  13. Linking SOM Content, Chemistry, and Decomposition: Complex Responses to Input Manipulation and Long-term Incubation

    NASA Astrophysics Data System (ADS)

    Bridgham, S. D.; Reynolds, L. L.; Tfaily, M.; Roscioli, K.; Lajtha, K.; Bowden, R.; Johnson, B. R.

    2014-12-01

    The mechanisms of soil organic matter (SOM) protection and their relationship with carbon inputs and decomposition are poorly understood. We used Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) and Fourier transform infrared spectroscopy (FTIR) to characterize SOM in soils exposed to litter-input exclusion or addition for 20 years, and subsequently incubated for more than a year. Our aim was to describe shifts in SOM content and chemical composition due to the input manipulation and degree of decomposition, particularly in the light (i.e., free particulate, younger) versus the heavy (mineral-adsorbed, older) fractions of SOM, and to link these shifts to carbon mineralization rates. The soils were collected from a deciduous hardwood forest in Meadville, PA, one of the Detritus and Input Removal Treatment (DIRT) sites. They were subjected to either litter and root exclusion (NI), double litter (DL), or ambient inputs (CO) for 20 years and subsequently incubated at 35oC for 525 days. Soils from the beginning and end of the incubation were divided into light and heavy fractions using 1.8 g cm-3 sodium polytungstate. Bulk CO soils and heavy fractions of NI, DL, and CO soil were analyzed with FTICR-MS, while light and heavy fractions were analyzed with FTIR. Twenty years of input exclusion decreased the mineralization rate, the total carbon respired, and total carbon content, though litter addition had no significant effect (NI < CO = DL). The FTICR-MS and FTIR data reveal substantial differences in SOM chemistry among DIRT treatments, fractions, and before and after incubation. CO contained several classes of compounds, including alcohols and phenols, not detected in either DL or NI soils, and all samples showed an enrichment in aromatics between the light and heavy fractions. The heavy fraction DL soils were proportionally enriched in lipids compared to NI and CO soils, and these lipids were preferentially mineralized during incubation. Heavy

  14. Occurrence of non extractable pesticide residues in physical and chemical fractions of two soils

    NASA Astrophysics Data System (ADS)

    Andreou, Kostas; Semple, Kirk; Jones, Kevin

    2010-05-01

    Soils are considered to be a significant sink for organic contaminants, including pesticides, in the environment. Understanding the distribution and localisation of aged pesticide residues in soil is of great importance for assessing the mobility and availability of these chemicals in the environment. This study aimed to characterise the distribution of radiolabeled herbicide isoproturon and the radiolabeled insecticides diazinon and cypermethrin in two organically managed soils. The soils were spiked and aged under laboratory conditions for 17 months. The labile fraction of the pesticides residues was recovered in CaCl2 (0.01M) and then subjected to physical size fractionation using sedimentation and centrifugation steps, with >20μm, 20-2μm and 2-0.1μm soil factions collected. Further, the distribution of the pesticide residues in the organic matter of the fractionated soil was investigated using a sequential alkaline extraction (0.1N NaOH) into humic and fulvic acid and humin. Soil fractions of 20-2μm and 2-0.1μm had the largest burden of the 14C-residues. Different soil constituents have different capacities to form non-extractable residues. Soil solid fractions of 20-2 µm and <2 µm had far greater affinity to the 14C-pesticide residues than the coarser fraction (>20 µm). Fulvic acid showed to play a vital role in the formation and stabilisation of non-extractable 14C-pesticide residues in most cases.Assessment of the likelihood of the pesticide residues to become available to soil biota requires an understanding of the structure of the SOM matrix and the definition of the kinetics of the pesticide residues in different SOM pools as a function of the time.

  15. Drivers of carbon dynamics and diagnostic fractions in grassland soils in Bavaria in a changing climate

    NASA Astrophysics Data System (ADS)

    Garcia-Franco, Noelia; Kühnel, Anna; Wiesmeier, Martin; Kiese, Ralf; Dannenmann, Michael; Wolf, Benjamin; Brandhuber, Robert; Treisch, Melanie; Kögel-Knabner, Ingrid

    2017-04-01

    The storage of carbon (C) in grassland soils is affected by two principal controlling factors: management practices and climate change. In particular, mountainous grassland soils may become a source of greenhouse gas emissions under global warming due to large amounts of labile C. In this regard, aggregate-occluded and mineral associated C may play a key role in the mitigation of climate change. Nevertheless, few studies have focused on different soil organic matter (SOM) pools and their main controlling factors in mountainous grassland soils. We analyzed the C development of long-term (1986-2012) monitoring grassland sites in Bavaria using Random Forest models. Sites with low initial C contents showed an increase of C, whereas the opposite trend was observed for sites with high initial C contents. Different controlling factors were related with the two main C trends. In addition, we determined the principal mechanisms involved in the build-up and stabilization of different C pools using a promising physical fractionation method. This method enables the separation of five different SOM fractions by density, ultrasonication and sieving separation: fine particulate organic matter (fPOM), occluded particulate organic matter (oPOM>20µm and oPOM<20µm) and mineral associated organic matter (sand and coarse silt, > 20 µm; medium + fine silt and clay, < 20 µm). The final aim is the determination of a diagnostic fraction that can be used as an indicator for future C changes in mountainous grassland soils.

  16. The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates plant litter decomposition with soil organic matter stabilization: do labile plant inputs form stable soil organic matter?

    PubMed

    Cotrufo, M Francesca; Wallenstein, Matthew D; Boot, Claudia M; Denef, Karolien; Paul, Eldor

    2013-04-01

    The decomposition and transformation of above- and below-ground plant detritus (litter) is the main process by which soil organic matter (SOM) is formed. Yet, research on litter decay and SOM formation has been largely uncoupled, failing to provide an effective nexus between these two fundamental processes for carbon (C) and nitrogen (N) cycling and storage. We present the current understanding of the importance of microbial substrate use efficiency and C and N allocation in controlling the proportion of plant-derived C and N that is incorporated into SOM, and of soil matrix interactions in controlling SOM stabilization. We synthesize this understanding into the Microbial Efficiency-Matrix Stabilization (MEMS) framework. This framework leads to the hypothesis that labile plant constituents are the dominant source of microbial products, relative to input rates, because they are utilized more efficiently by microbes. These microbial products of decomposition would thus become the main precursors of stable SOM by promoting aggregation and through strong chemical bonding to the mineral soil matrix. © 2012 Blackwell Publishing Ltd.

  17. Using isotopic dilution to assess chemical extraction of labile Ni, Cu, Zn, Cd and Pb in soils.

    PubMed

    Garforth, J M; Bailey, E H; Tye, A M; Young, S D; Lofts, S

    2016-07-01

    Chemical extractants used to measure labile soil metal must ideally select for and solubilise the labile fraction, with minimal solubilisation of non-labile metal. We assessed four extractants (0.43 M HNO3, 0.43 M CH3COOH, 0.05 M Na2H2EDTA and 1 M CaCl2) against these requirements. For soils contaminated by contrasting sources, we compared isotopically exchangeable Ni, Cu, Zn, Cd and Pb (EValue, mg kg(-1)), with the concentrations of metal solubilised by the chemical extractants (MExt, mg kg(-1)). Crucially, we also determined isotopically exchangeable metal in the soil-extractant systems (EExt, mg kg(-1)). Thus 'EExt - EValue' quantifies the concentration of mobilised non-labile metal, while 'EExt - MExt' represents adsorbed labile metal in the presence of the extractant. Extraction with CaCl2 consistently underestimated EValue for Ni, Cu, Zn and Pb, while providing a reasonable estimate of EValue for Cd. In contrast, extraction with HNO3 both consistently mobilised non-labile metal and overestimated the EValue. Extraction with CH3COOH appeared to provide a good estimate of EValue for Cd; however, this was the net outcome of incomplete solubilisation of labile metal, and concurrent mobilisation of non-labile metal by the extractant (MExtEValue). The Na2H2EDTA extractant mobilised some non-labile metal in three of the four soils, but consistently solubilised the entire labile fraction for all soil-metal combinations (MExt ≈ EExt). Comparison of EValue, MExt and EExt provides a rigorous means of assessing the underlying action of soil chemical extraction methods and could be used to refine long-standing soil extraction methodologies. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Comparison of metal lability in air-dried and fresh dewatered drinking water treatment residuals.

    PubMed

    Wang, Changhui; Pei, Yuansheng; Zhao, Yaqian

    2015-01-01

    In this work, the labilities of Al, As, Ba, Be, Ca, Cd, Co, Cr, Cu, Fe, Mg, Mn, Mo, Ni, Pb, Sr, V and Zn in air-dried (for 60 days) and fresh dewatered WTRs were compared using the Toxicity Characteristic Leaching Procedure (TCLP), fractionation, in vitro digestion and a plant enrichment test. The results showed that the air-dried and fresh dewatered WTRs had different properties, e.g., organic matter composition and available nutrients. The air-dried and fresh dewatered WTRs were non-haf zardous according to the TCLP assessment method used in the United States; however, the metals in the two types of WTRs had different lability. Compared with the metals in the fresh dewatered WTRs, those in the air-dried WTRs tended to be in more stable fractions and also exhibited lower bioaccessibility and bioavailability. Therefore, air-drying can decrease the metal lability and thereby reduce the potential metal pollution risk of WTRs.

  19. Effect of variable soil texture, metal saturation of soil organic matter (SOM) and tree species composition on spatial distribution of SOM in forest soils in Poland.

    PubMed

    Gruba, Piotr; Socha, Jarosław; Błońska, Ewa; Lasota, Jarosław

    2015-07-15

    In this study we investigated the effect of fine (ϕ<0.05mm) fraction, i.e., silt+clay (FF) content in soils, site moisture, metal (Al and Fe) of soil organic matter (SOM) and forest species composition on the spatial distribution of carbon (C) pools in forest soils at the landscape scale. We established 275 plots in regular 200×200m grid in a forested area of 14.4km(2). Fieldwork included soil sampling of the organic horizon, mineral topsoil and subsoil down to 40cm deep. We analysed the vertical and horizontal distribution of soil organic carbon (SOC) stocks, as well as the quantity of physically separated fractions including the free light (fLF), occluded light (oLF) and mineral associated fractions (MAF) in the mineral topsoil (A, AE) horizons. Distribution of C in soils was predominantly affected by the variation in the FF content. In soils richer in the FF more SOC was accumulated in mineral horizons and less in the organic horizons. Accumulation of SOC in mineral soil was also positively affected by the degree of saturation of SOM with Al and Fe. The increasing share of beech influenced the distribution of C stock in soil profiles by reducing the depth of O horizon and increasing C stored in mineral soil. The content of FF was positively correlated with the content of C in MAF and fLF fractions. The content of oLF and MAF fractions was also positively influenced by a higher degree of metal saturation, particularly Al. Our results confirmed that Al plays an important role in the stabilization of SOM inside aggregates (CoLF) and as in CMAF fractions. We also found a significant, positive effect of beech on the CfLF and fir on the CoLF content. Copyright © 2015 Elsevier B.V. All rights reserved.

  20. Modeling Effects of Lability on Microbial Uptake of DOM in River Reaches

    NASA Astrophysics Data System (ADS)

    Li, A.; Drummond, J. D.; Bowen, J. C.; Cory, R. M.; Kaplan, L.; Packman, A. I.

    2017-12-01

    Rivers are hotspots for biological degradation of dissolved organic matter (DOM), contributing to 1.8 petagrams of carbon emissions per year. DOM represents approximately 60% of the total mass of organic carbon transported within river networks, fueling stream ecosystem metabolism. Not all DOM is biodegradable, biodegradation rates vary based on lability, and lability decreases with reaction time. Fluorescent fractions of DOM (FDOM) are often used as proxies of DOM lability. Humic-like FDOM, previously considered recalcitrant and thought to contribute minimally to the biodegradable DOM pools, has recently been shown to contribute more than 50% to DOM uptake in bioreactor columns colonized by bacteria in stream water. Protein-like FDOM, a proxy for the biodegradable DOM pool, also contributes to the recalcitrant DOM pool in bioreactors. However, the contribution of different lability pools to DOM uptake at the reach scale remains elusive. Here we combine local-scale results from a bioreactor study and measures of stream geomorphology parameters to model reach-scale DOM uptake in White Clay Creek, a Pennsylvania piedmont stream with an intact, forested riparian zone and inputs from upland agriculture. Steady state modeling of a point-source, continuous injection of FDOM shows that humic-like FDOM contributes up to 80% of the total removal of FDOM at the reach scale, suggesting its importance to in-stream DOM uptake. Tryptophan-like FDOM, a protein-like FDOM, contributes to 80% of the remaining fraction of FDOM at the reach scale that incorporates longer timescales of transport and retention. This is consistent with recent local-scale findings that the lability of tryptophan-like FDOM decreases substantially with reaction time in bioreactors, such that it becomes much more recalcitrant as it travels downstream. Steady state modeling of a distributed source, continuous injection of FDOM shows that contributing sources distribute differently along the river reach for

  1. The effect of composition on stability ((14)C activity) of soil organic matter fractions from the albic and black soils.

    PubMed

    Jin, Jie; Sun, Ke; Wang, Ziying; Han, Lanfang; Wu, Fengchang; Xing, Baoshan

    2016-01-15

    The importance of the composition of soil organic matter (SOM) for carbon (C) cycling is still under debate. Here a single soil source was used to examine the specific influence of its composition on stability ((14)C activity) of SOM fractions while constraining other influential C turnover factors such as mineral, climate and plant input. The following SOM fractions were isolated from two soil samples: four humic acids, two humins, non-hydrolyzable carbon, and the demineralized fraction. We examined the isotope ratios of SOM fractions in relation to composition (such as aliphatic and aromatic C content) using solid state (13)C nuclear magnetic resonance (NMR) and thermal analysis. The Δ(14)C values of the fractions isolated from both an albic soil (SOMs-A) and a black soil (SOMs-B) correlated negatively with their peak temperature of decomposition and the temperature where half of the total heat of reaction was evolved, implying a potential link between thermal and biogeochemical stability of SOM fractions. Aryl C contents of SOMs-A determined using (13)C NMR varied inversely with δ(15)N values and directly with δ(13)C values, suggesting that part of aryl C of SOMs-A might be fire-derived. The Δ(14)C values of SOMs-A correlated positively with aliphatic C content and negatively with aromatic C content. We therefore concluded that fire-derived aromatic C in SOMs-A appeared to be more stable than microbially-derived aliphatic C. The greater decomposition of SOMs-B fractions weakened the relationship of their Δ(14)C values with alkyl and aryl C contents. Hence, the role of the composition of SOM fractions in regulating stability might be dependent on the source of specific C forms and their stage of decomposition. Copyright © 2015 Elsevier B.V. All rights reserved.

  2. Lability of Cd, Cu, and Zn in polluted soils treated with lime, beringite, and red mud and identification of a non-labile colloidal fraction of metals using istopic techniques.

    PubMed

    Lombi, Enzo; Hamon, Rebecca E; McGrath, Steve P; McLaughlin, Mike J

    2003-03-01

    The use of soil amendments has been proposed as a low input alternative for the remediation of metal polluted soils. However, little information is available concerning the stability, and therefore the longevity, of the remediation treatments when important soil parameters change. In this paper we investigate the effect of pH changes on the lability of heavy metals in soils treated with lime, beringite, and red mud using a modified isotopic dilution technique in combination with a stepwise acidification procedure. Significant amounts of nonlabile (fixed) Cu and Zn were found to be associated with colloids <0.2 microm in the solution phase. The results obtained indicated that the mobility of fixed colloidal metals is significant and increases with soil pH. This must be considered because most of the soil amendments are alkaline and increase soil pH. All the soil amendments significantly decreased the lability of Cd, Zn, and Cu in the soils as a whole. However, when the soils were re-acidified, the labile pool of metals increased sharply and in the case of lime and beringite, the lability of the metals was similar, at equal pH, to the untreated soil. In contrast the lability of metals in the red mud treated soils was always smaller than that in the untreated soils across the range of pH values tested. These results suggest that the mechanism of action of lime and beringite is similar and probably related to increased metal adsorption and precipitation of metal hydroxides and carbonates at high pH. In the case of red mud, a combination of pH dependent and independent mechanisms (possibly solid-phase diffusion or migration into micropores) may be responsible for the metal fixation observed.

  3. Carbohydrates and amino compounds as short-term indicators of soil management

    USDA-ARS?s Scientific Manuscript database

    The objective of this study was to investigate the changes in labile soil organic matter (SOM) fractions during the transition from conventional to organic farming. Two field experiments underwent the transition from conventional to organic farming during 2009–2011 in the south of Italy, at Foggia (...

  4. Stability of Soil Carbon Fractions - from molecules to aggregates

    NASA Astrophysics Data System (ADS)

    Mueller, C. W.; Mueller, K. E.; Freeman, K. H.; Eissenstat, D.; Kögel-Knabner, I.

    2009-12-01

    The turnover of soil organic matter (SOM) is controlled both by its chemical composition, its spatial bioavailability and the association with the mineral phase. Separation by physical fractionation of bulk soils and subsequent chemical analysis of these fractions should give insights to how compositional differences in SOM drive turnover rates of different size-defined carbon pools. The main objective of the study was to elucidate the relative abundance and recalcitrance of lignin and plant lipids (e.g. cutin and suberin) in the course of SOM decomposition within aggregated bulk soils and SOM fractions. By the parallel incubation of physically-separated size fractions and bulk soils of the Ah horizon from a forested soil (Picea abies L.Karst) over a period of 400 days, a unique set of samples was created to study SOM dynamics. We used solid-state 13C-CPMAS NMR spectroscopy and GC-MS (after copper oxide oxidation and solvent extraction) to analyze the composition of the incubated samples. The abundance and isotopic composition (including 13C and 14C) of respired CO2 further enabled us to monitor the dynamics of SOM mineralization. This approach allowed for differentiating between C stabilization of soil fractions due to accessibility/aggregation and to recalcitrance at different scales of resolution (GC-MS, NMR). A relative enrichment of alkyl C and decreasing lignin contents in the order of sand < silt < clay were observed by 13C-NMR and GC-MS within soils and fractions before the incubation, resulting in increased lipid to lignin ratios with decreasing particle size. A relative enrichment of lignin in the incubated fractions compared to the incubated bulk soils clearly indicated the preferential mineralization of less recalcitrant C compounds that were spatially inaccessible in aggregates of the bulk soil. Differences in the abundance of various lignin, cutin, and suberin monomers measured by GC-MS before and after the incubation indicate selective degradation

  5. Mood lability and psychopathology in youth.

    PubMed

    Stringaris, A; Goodman, R

    2009-08-01

    Mood lability is a concept widely used. However, data on its prevalence and morbid associations are scarce. We sought to establish the occurrence and importance of mood lability in a large community sample of children and adolescents by testing a priori hypotheses. Cross-sectional data were taken from a national mental health survey including 5326 subjects aged 8-19 years in the UK. The outcomes were prevalence and characteristics of mood lability and its associations with psychopathology and overall impairment. Mood lability occurred in more than 5% of the population of children and adolescents, both by parent and self-report. Mood lability was strongly associated with a wide range of psychopathology and was linked to significant impairment even in the absence of psychiatric disorders. Mood lability was particularly strongly associated with co-morbidity between internalizing and externalizing disorders, even when adjusting for the association with individual disorders. The pattern of results did not change after excluding youth with bipolar disorder or with episodes of elated mood. Clinically significant mood lability is relatively common in the community. Our findings indicate that mood lability is not a mere consequence of other psychopathology in that it is associated with significant impairment even in the absence of psychiatric diagnoses. Moreover, the pattern of association of mood lability with co-morbidity suggests that it could be a risk factor shared by both internalizing and externalizing disorders. Our data point to the need for greater awareness of mood lability and its implications for treatment.

  6. An anaerobic incubation study of metal lability in drinking water treatment residue with implications for practical reuse.

    PubMed

    Wang, Changhui; Yuan, Nannan; Pei, Yuansheng

    2014-06-15

    Drinking water treatment residue (WTR) is an inevitable by-product generated during the treatment of drinking water with coagulating agents. The beneficial reuse of WTR as an amendment for environmental remediation has attracted growing interest. In this work, we investigated the lability of Al, As, Ba, Be, Ca, Cd, Co, Cr, Cu, Fe, Mg, Mn, Mo, Ni, Pb, Sr, V and Zn in Fe/Al hydroxide-comprised WTR based on a 180-day anaerobic incubation test using fractionation, in vitro digestion and a toxicity characteristic leaching procedure. The results indicated that most metals in the WTR were stable during anaerobic incubation and that the WTR before and after incubation could be considered non-hazardous in terms of leachable metal contents according to US EPA Method 1311. However, the lability of certain metals in the WTR after incubation increased substantially, especially Mn, which may be due to the reduction effect. Therefore, although there is no evidence presented to restrict the use of WTR in the field, the lability of metals (especially Mn) in WTR requires further assessment prior to field application. In addition, fractionation (e.g., BCR) is recommended for use to determine the potential lability of metals under various conditions. Copyright © 2014 Elsevier B.V. All rights reserved.

  7. Sulfur species behavior in soil organic matter during decomposition

    USGS Publications Warehouse

    Schroth, A.W.; Bostick, B.C.; Graham, M.; Kaste, J.M.; Mitchell, M.J.; Friedland, A.J.

    2007-01-01

    Soil organic matter (SOM) is a primary re??servoir of terrestrial sulfur (S), but its role in the global S cycle remains poorly understood. We examine S speciation by X-ray absorption near-edge structure (XANES) spectroscopy to describe S species behavior during SOM decomposition. Sulfur species in SOM were best represented by organic sulfide, sulfoxide, sulfonate, and sulfate. The highest fraction of S in litter was organic sulfide, but as decomposition progressed, relative fractions of sulfonate and sulfate generally increased. Over 6-month laboratory incubations, organic sulfide was most reactive, suggesting that a fraction of this species was associated with a highly labile pool of SOM. During humification, relative concentrations of sulfoxide consistently decreased, demonstrating the importance of sulfoxide as a reactive S phase in soil. Sulfonate fractional abundance increased during humification irrespective of litter type, illustrating its relative stability in soils. The proportion of S species did not differ systematically by litter type, but organic sulfide became less abundant in conifer SOM during decomposition, while sulfate fractional abundance increased. Conversely, deciduous SOM exhibited lesser or nonexistent shifts in organic sulfide and sulfate fractions during decomposition, possibly suggesting that S reactivity in deciduous litter is coupled to rapid C mineralization and independent of S speciation. All trends were consistent in soils across study sites. We conclude that S reactivity is related to spqciation in SOM, particularly in conifer forests, and S species fractions in SOM change, during decomposition. Our data highlight the importance of intermediate valence species (sulfoxide and sulfonate) in the pedochemical cycling of organic bound S. Copyright 2007 by the American Geophysical Union.

  8. Size charge fractionation of metals in municipal solid waste landfill leachate.

    PubMed

    Oygard, Joar Karsten; Gjengedal, Elin; Røyset, Oddvar

    2007-01-01

    Municipal solid waste landfill leachates from 9 Norwegian sites were size charge fractionated in the field, to obtain three fractions: particulate and colloidal matter >0.45microm, free anions/non-labile complexes <0.45microm and free cations/labile complexes <0.45microm. The fractionation showed that Cd and Zn, and especially Cu and Pb, were present to a large degree (63-98%) as particulate and colloidal matter >0.45microm. Cr, Co and Ni were on the contrary present mostly as non-labile complexes (69-79%) <0.45microm. The major cations Ca, Mg, K, and Mn were present mainly as free cations/labile complexes <0.45microm, while As and Mo were present to a large degree (70-90%) as free anions/non-labile complexes <0.45microm. Aluminium was present mainly as particulate and colloidal matter >0.45microm. The particulate and colloidal matter >0.45microm was mainly inorganic; indicating that the metals present in this fraction were bound as inorganic compounds. The fractionation gives important information on the mobility and potential bioavailability of the metals investigated, in contrast to the total metal concentrations usually reported. To study possible changes in respective metal species in leachate in aerated sedimentation tanks, freshly sampled leachate was stored for 48h, and subsequently fractionated. This showed that the free heavy metals are partly immobilized during storage of leachate with oxygen available. The largest effects were found for Cd and Zn. The proportion of As and Cr present as particulate matter or colloids >0.45microm also increased.

  9. Hemorrhagic Shock and Surgical Stress Alter Distribution of Labile Zinc within High and Low Molecular Weight Plasma Fractions

    PubMed Central

    Kelly, Edward; Mathew, Jeff; Kohler, Jonathan E.; Blass, Amy L.; Soybel, David I.

    2012-01-01

    Zinc ions (Zn2+) are essential for tissue repair following injury or stress. We hypothesize that during such stresses Zn2+ is redistributed to labile pools in plasma components. Here we tested this hypothesis utilizing a novel assay to monitor labile Zn2+ in plasma in hemorrhagic shock. Adult rats in the Shock (S) group underwent hemorrhage and resuscitation. Blood samples were drawn at baseline, 1 hr, 4 hrs and 24 hrs. The Surgical Control (SC) group was anesthetized and instrumented, but not bled. Albumin, total Zn2+, and labile Zn2+ levels were assayed in plasma. Binding capacity for Zn2+ was assessed in high (HMW) and low (LMW) molecular weight pools. Significant decreases in total Zn2+ were observed by 24 hrs, in both S and SC groups. Albumin levels were significantly reduced in the S group at 1 hr and 4 hr but restored at 24 hrs; significant changes were not observed in other groups. In whole plasma, labile Zn2+ levels were stable initially in the S and SC groups, but declined at 24 hrs. In the HMW pool, marked and significant impairment of binding was noted throughout all time periods following the shock period in the S group. Such changes were observed in the SC group of less intensity and duration. These experiments suggest that Shock alters affinity of plasma proteins for Zn2+, promoting delivery to peripheral tissues during periods of increased Zn2+ utilization. PMID:22744307

  10. Hemorrhagic shock and surgical stress alter distribution of labile zinc within high- and low-molecular-weight plasma fractions.

    PubMed

    Kelly, Edward; Mathew, Jeff; Kohler, Jonathan E; Blass, Amy L; Soybel, And David I

    2012-08-01

    Zinc ions (Zn) are essential for tissue repair following injury or stress. We hypothesize that during such stresses Zn is redistributed to labile pools in plasma components. Here we tested this hypothesis using a novel assay to monitor labile Zn in plasma in hemorrhagic shock. Adult rats in the shock group (S group) underwent hemorrhage and resuscitation. Blood samples were drawn at baseline and at 1, 4, and 24 h. The surgical control group (SC group) was anesthetized and instrumented, but not bled. Albumin, total Zn, and labile Zn levels were assayed in plasma. Binding capacity for Zn was assessed in high- and low-molecular-weight pools. Significant decreases in total Zn were observed by 24 h, in both S and SC groups. Albumin levels were significantly reduced in the S group at 1 and 4 h but restored at 24 h; significant changes were not observed in other groups. In whole plasma, labile Zn levels were stable initially in the S and SC groups, but declined at 24 h. In the high-molecular-weight pool, marked and significant impairment of binding was noted throughout all time periods following the shock period in the S group. Such changes were observed in the SC group of less intensity and duration. These experiments suggest that shock alters affinity of plasma proteins for Zn, promoting delivery to peripheral tissues during periods of increased Zn utilization.

  11. Turnover and storage of C and N in five density fractions from California annual grassland surface soils

    NASA Astrophysics Data System (ADS)

    Baisden, W. T.; Amundson, R.; Cook, A. C.; Brenner, D. L.

    2002-12-01

    We measured 14C/12C in density fractions from soils collected before and after atmospheric thermonuclear weapons testing to examine soil organic matter (SOM) dynamics along a 3 million year California soil chronosequence. The mineral-free particulate organic matter (FPOM; <1.6 g cm-3) mainly contains recognizable plant material, fungal hyphae, and charcoal. Mineral-associated light fractions (1.6-2.2 g cm-3) display partially or completely humified fine POM, while the dense fraction (>2.2 g cm-3) consists of relatively OM-free sand and OM-rich clays. Three indicators of decomposition (C:N, δ13C, and δ15N) all suggest increasing SOM decomposition with increasing fraction density. The Δ14C-derived SOM turnover rates suggest that ≥90% of FPOM turns over in <10 years. The four mineral-associated fractions contain 69-86% "stabilized" (decadal) SOM with the remainder assumed to be "passive" (millenial) SOM. Within each soil, the four mineral-associated fractions display approximately the same residence time (34-42 years in 200 kyr soil, 29-37 years in 600 kyr soil, and 18-26 years in 1-3 Myr soils), indicating that a single stabilized SOM "pool" exists in these soils and may turn over primarily as a result of soil disruption.

  12. Short-term bioavailability of carbon in soil organic matter fractions of different particle sizes and densities in grassland ecosystems.

    PubMed

    Breulmann, Marc; Masyutenko, Nina Petrovna; Kogut, Boris Maratovich; Schroll, Reiner; Dörfler, Ulrike; Buscot, François; Schulz, Elke

    2014-11-01

    The quality, stability and availability of organic carbon (OC) in soil organic matter (SOM) can vary widely between differently managed ecosystems. Several approaches have been developed for isolating SOM fractions to examine their ecological roles, but links between the bioavailability of the OC of size-density fractions and soil microbial communities have not been previously explored. Thus, in the presented laboratory study we investigated the potential bioavailability of OC and the structure of associated microbial communities in different particle-size and density fractions of SOM. For this we used samples from four grassland ecosystems with contrasting management intensity regimes and two soil types: a Haplic Cambisol and a typical Chernozem. A combined size-density fractionation protocol was applied to separate clay-associated SOM fractions (CF1, <1 μm; CF2, 1-2 μm) from light SOM fractions (LF1, <1.8 g cm(-3); LF2, 1.8-2.0 g cm(-3)). These fractions were used as carbon sources in a respiration experiment to determine their potential bioavailability. Measured CO2-release was used as an index of substrate accessibility and linked to the soil microbial community structure, as determined by phospholipid fatty acids (PLFA) analysis. Several key factors controlling decomposition processes, and thus the potential bioavailability of OC, were identified: management intensity and the plant community composition of the grasslands (both of which affect the chemical composition and turnover of OC) and specific properties of individual SOM fractions. The PLFA patterns highlighted differences in the composition of microbial communities associated with the examined grasslands, and SOM fractions, providing the first broad insights into their active microbial communities. From observed interactions between abiotic and biotic factors affecting the decomposition of SOM fractions we demonstrate that increasing management intensity could enhance the potential bioavailability of

  13. Influence of Soil Organic Matter Stabilization Mechanisms on Temperature Sensitivity of Soil Respiration

    NASA Astrophysics Data System (ADS)

    Gillabel, J.; de Gryze, S.; Six, J.; Merckx, R.

    2007-12-01

    Knowledge on the sensitivity of soil organic matter (SOM) respiration to changes in temperature is crucial for predicting future impacts of climate change on soil C stocks. Temperature sensitivity of respiration is determined by the chemical structure of the compound to be decomposed and by the availability of the organic matter for decomposers. Biochemically recalcitrant SOM has a higher temperature sensitivity than biochemically labile SOM. However, it is hypothesized that the stabilization of SOM by interaction with the soil matrix could be an important attenuating control on temperature sensitivity. We investigated the effect of different SOM stabilization mechanisms on temperature sensitivity of SOM respiration. Two main mechanisms were considered: chemical interactions of SOM with clay and silt particles, and physical protection inside aggregates. Soil samples from an agricultural silt loam soil were fractionated by wet-sieving into macroaggregates, microaggregates and silt+clay fractions. SOM stabilization in the silt+clay fraction occurs mainly chemically, whereas in aggregates physical protection of SOM is more important. Samples of each fraction and of bulk soil were incubated at two temperatures (20°C and 30°C) for one month. After 2% of total soil carbon was respired, temperature sensitivity was determined for respiration of the next 0.5% of total soil carbon. This was done by calculating a Q10 value as the ratio of the times needed at each temperature to respire that fraction of the soil C. This method allows determination of temperature sensitivity independent of C quality. Calculated Q10 values decreased in the order bulk soil > macroaggregates > microaggregates > silt+clay, with the difference between macroaggregate Q10 and silt+clay Q10 being the only significant difference. These results indicate that protection of SOM attenuates temperature sensitivity, with chemical protection (silt+clay) having a larger effect than physical protection

  14. Permafrost and land cover as controlling factors for light fraction organic matter on the southern Qinghai-Tibetan plateau.

    PubMed

    Wu, Xiaodong; Zhao, Lin; Hu, Guojie; Liu, Guimin; Li, Wangping; Ding, Yongjian

    2018-02-01

    Permafrost degradation can stimulate the decomposition of organic soil matter and cause a large amount of greenhouse gas emissions into the atmosphere. The light fraction organic matter (LFOM) is a labile substrate for microbial decomposition and probably plays an important role in future permafrost carbon cycles. However, little is known about the distribution of LFOM and its relationship with permafrost and environmental factors. Here, we investigated the light fraction carbon (LFC) and nitrogen (LFN) contents and stocks under meadows and wet meadows with different permafrost conditions on the southern Qinghai-Tibetan Plateau. Our results showed that LFC and LFN were mainly distributed in the upper 30cm of soils, and the sites with permafrost had significantly higher contents of LFC and LFN than those from the sites without existing permafrost. The LFC and LFN decreased sharply with depth, suggesting that the soil organic matter (SOM) in this area was highly decomposed in deep soils. Soil moisture and bulk density explained approximately 50% of the variances in LFC and LFN for all the sampling sites, while soil moisture explained approximately 30% of the variance in permafrost sites. Both the C:N ratios and LFC:LFN ratios in the sites with permafrost were higher than those in the sites without permafrost. The results suggested that the permafrost and land cover types are the main factors controlling LFOM content and stock, and that permafrost degradation would lead to a decrease of LFOM and soil C:N ratios, thus accelerating the decomposition of SOM. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Biologically labile photoproducts from riverine non-labile dissolved organic carbon in the coastal waters

    NASA Astrophysics Data System (ADS)

    Kasurinen, V.; Aarnos, H.; Vähätalo, A.

    2015-06-01

    In order to assess the production of biologically labile photoproducts (BLPs) from non-labile riverine dissolved organic carbon (DOC), we collected water samples from ten major rivers, removed labile DOC and mixed the residual non-labile DOC with artificial seawater for microbial and photochemical experiments. Bacteria grew on non-labile DOC with a growth efficiency of 11.5% (mean; range from 3.6 to 15.3%). Simulated solar radiation transformed a part of non-labile DOC into BLPs, which stimulated bacterial respiration and production, but did not change bacterial growth efficiency (BGE) compared to the non-irradiated dark controls. In the irradiated water samples, the amount of BLPs stimulating bacterial production depended on the photochemical bleaching of chromophoric dissolved organic matter (CDOM). The apparent quantum yields for BLPs supporting bacterial production ranged from 9.5 to 76 (mean 39) (μmol C mol photons-1) at 330 nm. The corresponding values for BLPs supporting bacterial respiration ranged from 57 to 1204 (mean 320) (μmol C mol photons-1). According to the calculations based on spectral apparent quantum yields and local solar radiation, the annual production of BLPs ranged from 21 (St. Lawrence) to 584 (Yangtze) mmol C m-2 yr-1 in the plumes of the examined rivers. Complete photobleaching of riverine CDOM in the coastal ocean was estimated to produce 10.7 Mt C BLPs yr-1 from the rivers examined in this study and globally 38 Mt yr-1 (15% of riverine DOC flux from all rivers), which support 4.1 Mt yr-1 of bacterial production and 33.9 Mt yr-1 bacterial respiration.

  16. Advanced 13C NMR Analysis of the Light Fraction, Particulate Organic Matter, and Humic Acid Fractions From a Corn-Soybean Soil

    USDA-ARS?s Scientific Manuscript database

    Fractions of soil organic matter (SOM) are usually extracted from soil by either physical (e.g., size, density) or chemical (e.g., base, acid) procedures. Integrated procedures that combine both of these types promise greater insights into SOM chemistry and function. For a corn-soybean soil in Iowa,...

  17. Impact of Fe(III)-OM complexes and Fe(III) polymerization on SOM pools reactivity under different land uses

    NASA Astrophysics Data System (ADS)

    Giannetta, B.; Plaza, C.; Zaccone, C.; Siebecker, M. G.; Rovira, P.; Vischetti, C.; Sparks, D. L.

    2017-12-01

    Soil organic matter (SOM) protection and long-term accumulation are controlled by adsorption to mineral surfaces in different ways, depending on its molecular structure and pedo-climatic conditions. Iron (Fe) oxides are known to be key regulators of the soil carbon (C) cycle, and Fe speciation in soils is highly dependent on environmental conditions and chemical interactions with SOM. However, the molecular structure and hydrolysis of Fe species formed in association with SOM is still poorly described. We hypothesize the existence of two pools of Fe which interact with SOM: mononuclear Fe(III)-SOM complexes and precipitated Fe(III) hydroxides. To verify our hypothesis, we investigated the interactions between Fe(III) and physically isolated soil fractions by means of batch experiments at pH 7. Specifically, we examined the fine silt plus clay (FSi+C) fraction, obtained by ultrasonic dispersion and wet sieving. The soil samples spanned several land uses, including coniferous forest (CFS), grassland (GS), technosols (TS) and agricultural (AS) soils. Solid phase products and supernatants were analyzed for C and Fe content. X-ray diffraction (XRD) and Brunauer-Emmett-Teller (BET) analysis were also performed. Attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) was used to assess the main C functional groups involved in C complexation and desorption experiments. Preliminary linear combination fitting (LCF) of Fe K-edge extended X-ray absorption fine structure (EXAFS) spectra suggested the formation of ferrihydrite-like polymeric Fe(III) oxides in reacted CFS and GS samples, with higher C and Fe concentration. Conversely, mononuclear Fe(III) OM complexes dominated the speciation for TS and AS samples, characterized by lower C and Fe concentration, inhibiting the hydrolysis and polymerization of Fe (III). This approach will help revealing the mechanisms by which SOM pools can control Fe(III) speciation, and will elucidate how both Fe

  18. Priming of native soil organic matter by pyrogenic organic matter

    NASA Astrophysics Data System (ADS)

    DeCiucies, Silene; Dharmakeerthi, Saman; Whitman, Thea; Woolf, Dominic; Lehmann, Johannes

    2015-04-01

    Priming, in relation to pyrogenic organic matter (PyOM), describes the change in mineralization rate of non-pyrogenic ("native") soil organic matter (nSOM) due to the addition of PyOM. Priming may be 'positive', in that the addition of pyC increases the mineralization rate of native SOM, or 'negative', in that the mineralization rate of nSOM is decreased. Reasons for increased mineralization may include: (i) co-metabolism: microbial decomposition of labile C-additions increases microbial activity, and facilitates additional decomposition of npSOC by active enzymes; (ii) stimulation: substrate additions result in lifted pH, nutrient, oxygen, or water constraints resulting in increased microbial activity. Decreased mineralization may be a result of: (i) inhibition: the opposite of stimulation whereby constraints are aggravated by substrate addition. Substrate addition may also cause inhibition by interfering with enzymes or signaling compounds; (ii) preferential substrate utilization: labile fraction of PyOM additions are preferentially used up by microbes thus causing a decrease in nSOC decomposition; (iii) sorption: organic compounds are adsorbed onto PyOM surfaces, decreasing their rate of mineralization; (iv) stabilization: formation of organo-mineral associations forms stable SOC pools. We have conducted a suite of experiments to investigate these potential interactions. In a seven year long incubation study, PyOM additions increased total OM mineralization for the first 2.5 years, was equal to control after 6.2 years, and was 3% lower after 7.1 years. Cumulative nSOM mineralization was 23% less with the PyOM additions than without, and over 60% of the added PyOM was present in the labile soil fraction after the 7.1 year incubation. Two additional incubation studies, one with and without plants, showed greater nSOM mineralization in the short term and lower nSOM mineralization over the long term. Increased nSOC mineralization due to the presence of plants was

  19. Soil organic carbon dynamics across a nitrogen deposition gradient: application of the PnET-SOM model to northeastern forest ecosystems

    NASA Astrophysics Data System (ADS)

    Tonitto, C.; Goodale, C. L.; Ollinger, S. V.; Jenkins, J.

    2009-12-01

    Anthropogenic forcing of the C and N cycles has caused rapid change in atmospheric CO2 and N deposition, with complex and uncertain effects on forest C and N balance. We developed the PnET-SOM model to enhance the model description of carbon and nitrogen coupling. Here we applied PnET-SOM to study changes to ecosystem carbon storage across a nitrogen deposition gradient. We designed the PnET-SOM model to: 1) represent SOM structured around measurable SOM pools, 2) expand simulated soil horizon complexity beyond the 1-box approach to hydrology and SOM structure used in PnET-CN, 3) model humified and mineral associated SOM using parameters derived from C14 field studies, and 4) couple C and N cycles to allow N-limitation of decomposition and plant growth. We explicitly modeled labile, biochemically recalcitrant (humified SOM), and physically-chemically protected (mineral associated SOM) C pools. These SOM pools are modeled in distinct soil horizons including: a forest floor, a mixed organic horizon, an A horizon, and a B horizon. Slow turnover pools of the A and B horizon constitute a significant proportion of SOC; explicitly modeling a deeper soil profile is important for estimating ecosystem SOC storage. In the latest version of PnET-SOM, we described N mineralization-immobilization in the forest floor based on equations derived in the LIDET synthesis study. Validation of the PnET-SOM model was conducted using 1) long-term water flux and nitrate leaching data from the Hubbard Brook LTER, 2) CO2 respiration observations from the Harvard Forest LTER, and 3) C and N stock and flux observations from the Harvard Forest LTER. In this work, we applied the PnET-SOM model to study the effects of an N deposition gradient on SOC dynamics over a 300 year simulation. We represented the effects of N deposition on litter decomposition by varying the exponential decay parameters of the litter layer based on observations from the Harvard Forest N addition experiment. We derived the

  20. Soil Organic Matter (SOM): Molecular Simulations

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Andersen, Amity

    Molecular simulation is a powerful tool used to gain an atomistic, molecular, and nanoscale level understanding of the structure, dynamics, and interactions from adsorption on minerals and assembly in aggregates of soil organic matter (SOM). Given the importance of SOM fate and persistence in soils and the current knowledge gaps, applications of atomistic scale simulations to study the complex compounds in SOM and their interactions in self-assembled aggregates composed of different organic matter compounds and with mineral surfaces of different types common in soils are few and far between. Here, we describe various molecular simulation methods that are currently inmore » use in various areas and applicable to SOM research, followed by a brief survey of specific applications to SOM research and an illustration with our own recent efforts in this area. We conclude with an outlook and the challenges for future research in this area.« less

  1. Light availability affects sex lability in a gynodioecious plant.

    PubMed

    Varga, Sandra; Kytöviita, Minna-Maarit

    2016-11-01

    Sex lability (i.e., gender diphasy) in plants is classically linked to the larger resource needs associated with the female sexual function (i.e., seed production) compared to the male function (i.e., pollen production). Sex lability in response to the environment is extensively documented in dioecious species, but has been largely overlooked in gynodioecious plants. Here, we tested whether environmental conditions induce sex lability in the gynodioecious Geranium sylvaticum. We conducted a transplantation experiment in the field where plants with different sex expression were reciprocally transplanted between high light and low light habitats. We measured plants' reproductive output and sex expression over four years. Our results show that sex expression was labile over the study period. The light level at the destination habitat had a significant effect on sexual expression and reproductive output, because plants decreased their reproductive output when transplanted to the low light habitat. Transplantation origin did not affect any parameter measured. This study shows that sex expression in Geranium sylvaticum is labile and related to light availability. Sexually labile plants did not produce more seeds or pollen, and thus, there was no apparent fitness gain in sexually labile individuals. Sex lability in gynodioecious plants may be more common than previously believed because detection of sex lability necessitates data on the same individuals over time, which is rare in sexually dimorphic herbaceous plants. © 2016 Botanical Society of America.

  2. Fate of lignin, cutin and suberin in soil organic matter fractions - an incubation experiment

    NASA Astrophysics Data System (ADS)

    Mueller, Carsten W.; Mueller, Kevin E.; Freeman, Katherine H.; Ingrid, Kögel-Knabner

    2010-05-01

    The turnover of soil organic matter (SOM) is controlled by its chemical composition, its spatial accessibility and the association with the mineral phase. Separation of bulk soils by physical fractionation and subsequent chemical analysis of these fractions should give insights to how compositional differences in SOM drive turnover rates of different size-defined carbon pools. The main objective of this study was to elucidate the relative abundance and recalcitrance of lignin, cutin and suberin in aggregated bulk soils and SOM fractions in the course of SOM decomposition. Bulk soils and physically-separated size fractions (sand, silt and clay) of the Ah horizon of a forest soil (under Picea abies L.Karst) were parallel incubated over a period of one year. In order to differentiate between particulate OM (POM) and mineral-associated SOM the particle size fractions were additionally separated by density after the incubation experiment. We used solid-state 13C-CPMAS NMR spectroscopy and GC-MS (after copper oxide oxidation and solvent extraction) to analyze the composition of the incubated samples. The abundance and isotopic composition (including 13C and 14C) of the respired CO2 further enabled us to monitor the dynamics of SOM mineralization. This approach allowed for differentiating between C stabilization of soil fractions due to accessibility/aggregation and to biochemical recalcitrance at different scales of resolution (GC-MS, NMR). We found a relative enrichment of alkyl C and decreasing lignin contents in the order of sand < silt < clay by 13C-NMR spectroscopy and GC-MS within soils and fractions before the incubation, resulting in increased lipid to lignin ratios with decreasing particle size. An accumulation of aliphatic C compounds was especially found for the small silt and clay sized particulate OM (POM). For the fresh particulate OM (POM) of the sand fraction a clear decay of lignin was observed in the course of the incubation experiment, indicated by

  3. Plant litter chemistry alters the content and composition of organic carbon associated with soil mineral and aggregate fractions in invaded ecosystems.

    PubMed

    Tamura, Mioko; Suseela, Vidya; Simpson, Myrna; Powell, Brian; Tharayil, Nishanth

    2017-10-01

    Through the input of disproportionate quantities of chemically distinct litter, invasive plants may potentially influence the fate of organic matter associated with soil mineral and aggregate fractions in some of the ecosystems they invade. Although context dependent, these native ecosystems subjected to prolonged invasion by exotic plants may be instrumental in distinguishing the role of plant-microbe-mineral interactions from the broader edaphic and climatic influences on the formation of soil organic matter (SOM). We hypothesized that the soils subjected to prolonged invasion by an exotic plant that input recalcitrant litter (Japanese knotweed, Polygonum cuspidatum) would have a greater proportion of plant-derived carbon (C) in the aggregate fractions, as compared with that in adjacent soil inhabited by native vegetation that input labile litter, whereas the soils under an invader that input labile litter (kudzu, Pueraria lobata) would have a greater proportion of microbial-derived C in the silt-clay fraction, as compared with that in adjacent soils that receive recalcitrant litter. At the knotweed site, the higher C content in soils under P. cuspidatum, compared with noninvaded soils inhabited by grasses and forbs, was limited to the macroaggregate fraction, which was abundant in plant biomarkers. The noninvaded soils at this site had a higher abundance of lignins in mineral and microaggregate fractions and suberin in the macroaggregate fraction, partly because of the greater root density of the native species, which might have had an overriding influence on the chemistry of the above-ground litter input. At the kudzu site, soils under P. lobata had lower C content across all size fractions at a 0-5 cm soil depth despite receiving similar amounts of Pinus litter. Contrary to our prediction, the noninvaded soils receiving recalcitrant Pinus litter had a similar abundance of plant biomarkers across both mineral and aggregate fractions, potentially because of

  4. Integrating plant litter quality, soil organic matter stabilization, and the carbon saturation concept.

    PubMed

    Castellano, Michael J; Mueller, Kevin E; Olk, Daniel C; Sawyer, John E; Six, Johan

    2015-09-01

    Labile, 'high-quality', plant litters are hypothesized to promote soil organic matter (SOM) stabilization in mineral soil fractions that are physicochemically protected from rapid mineralization. However, the effect of litter quality on SOM stabilization is inconsistent. High-quality litters, characterized by high N concentrations, low C/N ratios, and low phenol/lignin concentrations, are not consistently stabilized in SOM with greater efficiency than 'low-quality' litters characterized by low N concentrations, high C/N ratios, and high phenol/lignin concentrations. Here, we attempt to resolve these inconsistent results by developing a new conceptual model that links litter quality to the soil C saturation concept. Our model builds on the Microbial Efficiency-Matrix Stabilization framework (Cotrufo et al., 2013) by suggesting the effect of litter quality on SOM stabilization is modulated by the extent of soil C saturation such that high-quality litters are not always stabilized in SOM with greater efficiency than low-quality litters. © 2015 John Wiley & Sons Ltd.

  5. An isotopic investigation of the temperature response of young and old soil organic matter respiration

    NASA Astrophysics Data System (ADS)

    Burns, Nancy; Cloy, Joanna; Garnett, Mark; Reay, David; Smith, Keith; Otten, Wilfred

    2010-05-01

    The effect of temperature on rates of soil respiration is critical to our understanding of the terrestrial carbon cycle and potential feedbacks to climate change. The relative temperature sensitivity of labile and recalcitrant soil organic matter (SOM) is still controversial; different studies have produced contrasting results, indicating limited understanding of the underlying relationships between stabilisation processes and temperature. Current global carbon cycle models still rely on the assumption that SOM pools with different decay rates have the same temperature response, yet small differences in temperature response between pools could lead to very different climate feedbacks. This study examined the temperature response of soil respiration and the age of soil carbon respired from radiocarbon dated fractions of SOM (free, intra-aggregate and mineral-bound) and whole soils (organic and mineral layers). Samples were collected from a peaty gley soil from Harwood Forest, Northumberland, UK. SOM fractions were isolated from organic layer (5 - 17 cm) material using high density flotation and ultrasonic disaggregation - designated as free (< 1.8 g cm-3), intra-aggregate (< 1.8 g cm-3 within aggregates > 1.8 g cm-3) and mineral-bound (> 1.8 g cm-3) SOM. Fractions were analysed for chemical composition (FTIR, CHN analysis, ICP-OES), 14C (AMS), δ13C and δ15N (MS) and thermal properties (DSC). SOM fractions and bulk soil from the organic layer and the mineral layer (20 - 30 cm) were incubated in sealed vessels at 30 ° C and 10 ° C for 3 or 9 months to allow accumulation of CO2 sufficient for sampling. Accumulated respired CO2 samples were collected on zeolite molecular sieve cartridges and used for AMS radiocarbon dating. In parallel, material from the same fractions and layers were incubated at 10 ° C, 15 ° C, 25 ° C and 30 ° C for 6 months and sampled weekly for CO2 flux measurements using GC chromatography. Initial data have shown radiocarbon ages ranging

  6. Effects of exotic plantation forests on soil edaphon and organic matter fractions.

    PubMed

    Xu, Gang; Liu, Yao; Long, Zhijian; Hu, Shanglian; Zhang, Yuanbin; Jiang, Hao

    2018-06-01

    There is uncertainty and limited knowledge regarding soil microbial properties and organic matter fractions of natural secondary forest accompanying chemical environmental changes of replacement by pure alien plantation forests in a hilly area of southwest of Sichuan province China. The aim of this study was to evaluate the impact of natural secondary forest (NSF) to pure Cryptomeria fortunei forest (CFF) and Cunninghamia lanceolata forest (CLF) on soil organic fractions and microbial communities. The results showed that the soil total phospholipid fatty acids (PLFAs), total bacteria and fungi, microbial carbon pool, organic recalcitrant carbon (C) and (N) fractions, soil microbial quotient and labile and recalcitrant C use efficiencies in each pure plantation were significantly decreased, but their microbial N pool, labile C and N pools, soil carbon dioxide efflux, soil respiratory quotient and recalcitrant N use efficiency were increased. An RDA analysis revealed that soil total PLFAs, total bacteria and fungi and total Gram-positive and Gram-negative bacteria were significantly associated with exchangeable Al 3+ , exchangeable acid, Al 3+ , available P and Mg 2+ and pH, which resulted into microbial functional changes of soil labile and recalcitrant substrate use efficiencies. Modified microbial C- and N-use efficiency due to forest conversion ultimately meets those of rapidly growing trees in plantation forests. Enlarged soil labile fractions and soil respiratory quotients in plantation forests would be a potential positive effect for C source in the future forest management. Altogether, pure plantation practices could provoke regulatory networks and functions of soil microbes and enzyme activities, consequently leading to differentiated utilization of soil organic matter fractions accompanying the change in environmental factors. Copyright © 2018 Elsevier B.V. All rights reserved.

  7. Response of SOM Decomposition to Anthropogenic N Deposition: Simulations From the PnET-SOM Model.

    NASA Astrophysics Data System (ADS)

    Tonitto, C.; Goodale, C. L.; Ollinger, S. V.; Jenkins, J. P.

    2008-12-01

    Anthropogenic forcing of the C and N cycles has caused rapid change in atmospheric CO2 and N deposition, with complex and uncertain effects on forest C and N balance. With some exceptions, models of forest ecosystem response to anthropogenic perturbation have historically focused more on aboveground than belowground processes; the complexity of soil organic matter (SOM) is often represented with abstract or incomplete SOM pools, and remains difficult to quantify. We developed a model of SOM dynamics in northern hardwood forests with explicit feedbacks between C and N cycles. The soil model is linked to the aboveground dynamics of the PnET model to form PnET-SOM. The SOM model includes: 1) physically measurable SOM pools, including humic and mineral-associated SOM in O, A, and B soil horizons, 2) empirical soil turnover times based on 14C data, 3) alternative SOM decomposition algorithms with and without explicit microbial processing, and 4) soluble element transport explicitly linked to the hydrologic cycle. We tested model sensitivity to changes in litter decomposition rate (k) and completeness of decomposition (limit value) by altering these parameters based on experimental observations from long-term litter decomposition experiments with N fertilization treatments. After a 100 year simulation, the Oe+Oa horizon SOC pool was reduced by 15 % and the A-horizon humified SOC was reduced by 7 % for N deposition scenarios relative to forests without N fertilization. In contrast, predictions for slower time-scale pools showed negligible variation in response to variation in the limit values tested, with A-horizon mineral SOC pools reduced by < 3 % and B-horizon mineral SOC reduced by 0.1 % for N deposition scenarios relative to forests without N fertilization. The model was also used to test the effect of varying initial litter decomposition rate to simulate response to N deposition. In contrast to the effect of varying limit values, simulations in which only k

  8. Little effects on soil organic matter chemistry of density fractions after seven years of forest soil warming.

    PubMed

    Schnecker, Jörg; Borken, Werner; Schindlbacher, Andreas; Wanek, Wolfgang

    2016-12-01

    Rising temperatures enhance microbial decomposition of soil organic matter (SOM) and thereby increase the soil CO 2 efflux. Elevated decomposition rates might differently affect distinct SOM pools, depending on their stability and accessibility. Soil fractions derived from density fractionation have been suggested to represent SOM pools with different turnover times and stability against microbial decomposition. To investigate the effect of soil warming on functionally different soil organic matter pools, we here investigated the chemical and isotopic composition of bulk soil and three density fractions (free particulate organic matter, fPOM; occluded particulate organic matter, oPOM; and mineral associated organic matter, MaOM) of a C-rich soil from a long-term warming experiment in a spruce forest in the Austrian Alps. At the time of sampling, the soil in this experiment had been warmed during the snow-free period for seven consecutive years. During that time no thermal adaptation of the microbial community could be identified and CO 2 release from the soil continued to be elevated by the warming treatment. Our results, which included organic carbon content, total nitrogen content, δ 13 C, Δ 14 C, δ 15 N and the chemical composition, identified by pyrolysis-GC/MS, showed no significant differences in bulk soil between warming treatment and control. Surprisingly, the differences in the three density fractions were mostly small and the direction of warming induced change was variable with fraction and soil depth. Warming led to reduced N content in topsoil oPOM and subsoil fPOM and to reduced relative abundance of N-bearing compounds in subsoil MaOM. Further, warming increased the δ 13 C of MaOM at both sampling depths, reduced the relative abundance of carbohydrates while it increased the relative abundance of lignins in subsoil oPOM. As the size of the functionally different SOM pools did not significantly change, we assume that the few and small

  9. Nitrogen stabilization in organo-mineral fractions from soils with different land uses

    NASA Astrophysics Data System (ADS)

    Giannetta, Beatrice; Zaccone, Claudio; Rovira, Pere; Vischetti, Costantino; Plaza, César

    2017-04-01

    Understanding the processes that control quantity and quality of soil organic matter (SOM) interacting with mineral surfaces is of paramount importance. Although several physical fractionation methods have been proposed to date to obtain fractions that mirror SOM degree of stability and protection, a detailed quantification of stabilisation modes through which SOM bounds to the mineral matrix is still lacking. In this research we determined C and N distribution in several soils including coniferous and broadleaved forest soils, grassland soils, technosols and an agricultural soil amended with biochar at rates of 0 and 20 t/ha in a factorial combination with two types of organic amendment (municipal solid waste compost and sewage sludge). We performed a physical size fractionation by ultrasonic dispersion and wet sieving, splitting particles into four different size fractions: coarse sand (2000-200 µm diameter), fine sand (200-50 µm), coarse silt (50-20 µm) and fine silt plus clay (<20 µm). The fraction <20 µm, that includes organo-mineral complexes, was then subjected to the organo-mineral fractionation method (SOF) proposed by Lopez-Sangil and Rovira (2013), in order to define the importance of different stabilization modes. This method, in fact, allows resolving the nature of different bonds between mineral and organic components by the use of sequential extractions with chemical reagents (potassium sulphate, sodium tetraborate, sodium pyrophosphate, sodium hydroxide, sodium hydroxide after weak acid attack, sodium hydroxide after sodium dithionite pretreatment, and sodium hydroxide after hydrofluoric acid pretreatments). Elemental analysis (CHN) was then carried out on SOM pools isolated from different fractions. Preliminary data show that, for all land uses in general, and for grassland soils in particular, most of the total N is found in organo-mineral complexes (fraction <20 µm). The total N content of the size fractions, especially of the <20um

  10. Suberin-derived aliphatic monomers as biomarkers for SOM affected by root litter contribution

    NASA Astrophysics Data System (ADS)

    Kogel-Knabner, I.; Spielvogel, S.-; Prietzel, J.-

    2012-12-01

    The patchy distribution of trees and ground vegetation may have major impact on SOC variability and stability at the small scale. Knowledge about correlations between the pattern of tree and ground vegetation, SOC stocks in different soil depths and the contribution of root- vs. shoot-derived carbon to different SOC fractions is scarce. We have tested analysis of hydrolysable aliphatic monomers derived from the biopolyesters cutin- and suberin to investigate whether their composition can be traced back after decay and transformation into soil organic matter (SOM) to study SOM source, degradation, and stand history. The main objective of this study was to elucidate the relative abundance of cutin and suberin in different particle size and density fractions of a Norway spruce and a European beech site with increasing distance to stems. Soil samples, root, bark and needle/leave samples were analyzed for their cutin and/or suberin signature. Previous to isolation of bound lipids, sequential solvent extraction was used to remove free lipids and other solvent extractable compounds. Cutin- and suberin-derived monomers were extracted from the samples using base hydrolysis. Before analysis by Gas Chromatography/Mass Spectrometry (GC/MS), extracts were derivatized to convert compounds to trimethylsilyl derivatives. Statistical analysis identified four variables which as combined factors discriminated significantly between cutin and suberin based on their structural units. We found a relative enrichment of cutin and suberin contents in the occluded fraction at both sites that decreased with increasing distance to the trees. We conclude from our results that (i) patchy above- and belowground carbon input caused by heterogeneous distribution of trees and ground vegetation has major impact on SOC variability and stability at the small scale, (ii) tree species is an important factor influencing SOC heterogeneity at the stand scale due to pronounced differences in above- and

  11. Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

    NASA Astrophysics Data System (ADS)

    Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M.

    2013-02-01

    Benthic macroalgae are a common symptom of eutrophication in shallow coastal bays as a result of increased nutrient loads. Microphytobenthos (MPB) and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and MPB on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (∼16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g. L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ∼1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of MPB (i.e. light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24 %, respectively. This decrease likely resulted from shading by macroalgae, which

  12. Microphytobenthos and benthic macroalgae determine sediment organic matter composition in shallow photic sediments

    NASA Astrophysics Data System (ADS)

    Hardison, A. K.; Canuel, E. A.; Anderson, I. C.; Tobias, C. R.; Veuger, B.; Waters, M. N.

    2013-08-01

    Microphytobenthos and benthic macroalgae play an important role in system metabolism within shallow coastal bays. However, their independent and interactive influences on sediment organic matter (SOM) are not well understood. We investigated the influence of macroalgae and microphytobenthos on SOM quantity and quality in an experimental mesocosm system using bulk and molecular level (total hydrolyzable amino acids, THAA; phospholipid linked fatty acids, PLFA; pigment) analyses. Our experiment used an incomplete factorial design made up of two factors, each with two levels: (1) light (ambient vs. dark) and (2) macroalgae (presence vs. absence of live macroalgae). Over the course of the 42-day experiment, total organic carbon (TOC) and total nitrogen (TN) increased under ambient light by 173 ± 14 and 141 ± 7%, respectively, compared to in the dark (78 ± 29 and 39 ± 22%). THAA comprised a substantial fraction of SOM (~ 16% of TOC, 35% of TN) and followed TOC and TN accumulation patterns. Mole percent composition of the THAA pool indicated that SOM was composed of more labile organic material (e.g., L-glutamic acid, phenylalanine) under ambient light conditions while SOM in dark treatments was more degraded, with higher proportions of glycine and D-alanine. PLFA content, which represents viable biomass, made up ~ 1% of TOC and contained high levels of algal fatty acids in the light, particularly PLFA derived from diatoms. In the presence of microphytobenthos (i.e., light and macroalgae treatments), SOM lability increased, resulting in the observed increases in bacterial PLFA concentrations. Macroalgae, which were added to half of the light treatments, decreased SOM accumulation compared to light treatments without macroalgae, with TOC and TN increasing by only 130 ± 32 and 94 ± 24%, respectively. This decrease likely resulted from shading by macroalgae, which reduced production of microphytobenthos. The presence of macroalgae decreased SOM lability as well, which

  13. Interannual rainfall variability and SOM-based circulation classification

    NASA Astrophysics Data System (ADS)

    Wolski, Piotr; Jack, Christopher; Tadross, Mark; van Aardenne, Lisa; Lennard, Christopher

    2018-01-01

    Self-Organizing Maps (SOM) based classifications of synoptic circulation patterns are increasingly being used to interpret large-scale drivers of local climate variability, and as part of statistical downscaling methodologies. These applications rely on a basic premise of synoptic climatology, i.e. that local weather is conditioned by the large-scale circulation. While it is clear that this relationship holds in principle, the implications of its implementation through SOM-based classification, particularly at interannual and longer time scales, are not well recognized. Here we use a SOM to understand the interannual synoptic drivers of climate variability at two locations in the winter and summer rainfall regimes of South Africa. We quantify the portion of variance in seasonal rainfall totals that is explained by year to year differences in the synoptic circulation, as schematized by a SOM. We furthermore test how different spatial domain sizes and synoptic variables affect the ability of the SOM to capture the dominant synoptic drivers of interannual rainfall variability. Additionally, we identify systematic synoptic forcing that is not captured by the SOM classification. The results indicate that the frequency of synoptic states, as schematized by a relatively disaggregated SOM (7 × 9) of prognostic atmospheric variables, including specific humidity, air temperature and geostrophic winds, captures only 20-45% of interannual local rainfall variability, and that the residual variance contains a strong systematic component. Utilising a multivariate linear regression framework demonstrates that this residual variance can largely be explained using synoptic variables over a particular location; even though they are used in the development of the SOM their influence, however, diminishes with the size of the SOM spatial domain. The influence of the SOM domain size, the choice of SOM atmospheric variables and grid-point explanatory variables on the levels of explained

  14. The Role of Management in Enrichment Ratio Dynamics and Resilience of Aggregate Fractions Via Raindrop Impact within Agricultural Hillslopes

    NASA Astrophysics Data System (ADS)

    Wacha, K.; Papanicolaou, T.; Hatfield, J.; Cambardella, C.; Abban, B. K.; Wilson, C. G.; Filley, T. R.; Hou, T.; Dold, C.

    2017-12-01

    The abundance and distribution of surface soil size fractions has been shown to be reflective of changes in management practices and landscape position. Soil size fractions exist in both un-aggregated and aggregated forms that differ in textural and biological composition, which can impact soil hydrology and aggregation processes. Soils with higher stocks of soil organic matter (SOM) promote higher biological activity, infiltration, and soil structure due to stronger, more resilient aggregates. Within ag-systems, intensive cultivation and steep gradients can negatively impact the formation/stability of aggregates and amplify erosion processes, which redistributes material along downslope flowpathways to varying degrees, based on the amount of available surface cover during a rainfall event. The innate variability in SOM composition found amongst the size fractions combined with these highly active flowpathways, produces a symphony of interactive biogeochemical and hydrologic processes, which promote spatial landscape heterogeneity. Due to this intricacy, accurately assessing changes in SOM stocks within high energy ag-systems is extremely challenging, and could greatly impact soil carbon budgets at the hillslope and greater spatial scales. To address this, in part, we utilize a systematic approach that isolates the role of management in building aggregate resilience to hydrologic forcing. Soil samples were collected from farm fields with varying slopes (1-20%) and management conditions, and then isolated into seven aggregate size fractions. Each aggregate fraction was tested for resilience to raindrop impact with corresponding SOM composition and biological activity. Rainfall simulations were conducted on plots under representative management and gradient to capture the dynamicity of the size fractions being transported during an applied rainfall event. Results found that small macroaggregate fractions were most indicative of changes in management, and erosion

  15. Light and heavy fractions of soil organic matter in response to climate warming and increased precipitation in a temperate steppe.

    PubMed

    Song, Bing; Niu, Shuli; Zhang, Zhe; Yang, Haijun; Li, Linghao; Wan, Shiqiang

    2012-01-01

    Soil is one of the most important carbon (C) and nitrogen (N) pools and plays a crucial role in ecosystem C and N cycling. Climate change profoundly affects soil C and N storage via changing C and N inputs and outputs. However, the influences of climate warming and changing precipitation regime on labile and recalcitrant fractions of soil organic C and N remain unclear. Here, we investigated soil labile and recalcitrant C and N under 6 years' treatments of experimental warming and increased precipitation in a temperate steppe in Northern China. We measured soil light fraction C (LFC) and N (LFN), microbial biomass C (MBC) and N (MBN), dissolved organic C (DOC) and heavy fraction C (HFC) and N (HFN). The results showed that increased precipitation significantly stimulated soil LFC and LFN by 16.1% and 18.5%, respectively, and increased LFC:HFC ratio and LFN:HFN ratio, suggesting that increased precipitation transferred more soil organic carbon into the quick-decayed carbon pool. Experimental warming reduced soil labile C (LFC, MBC, and DOC). In contrast, soil heavy fraction C and N, and total C and N were not significantly impacted by increased precipitation or warming. Soil labile C significantly correlated with gross ecosystem productivity, ecosystem respiration and soil respiration, but not with soil moisture and temperature, suggesting that biotic processes rather than abiotic factors determine variations in soil labile C. Our results indicate that certain soil carbon fraction is sensitive to climate change in the temperate steppe, which may in turn impact ecosystem carbon fluxes in response and feedback to climate change.

  16. Linking measurements of biodegradability, thermal stability and chemical composition to evaluate the effects of management on soil organic matter

    NASA Astrophysics Data System (ADS)

    Gregorich, Ed; Gillespie, Adam; Beare, Mike; Curtin, Denis; Sanei, Hamed; Yanni, Sandra

    2015-04-01

    The stability of soil organic matter (SOM) as it relates to resistance to microbial degradation has important implications for nutrient cycling, emission of greenhouse gases, and C sequestration. Hence, there is interest in developing new ways to accurately quantify and characterise the labile and stable forms of soil organic C. Our objectives in this study were to evaluate and describe relationships among the biodegradability, thermal stability and chemistry of SOM in soil under widely contrasting management regimes. Samples from the same soil under permanent pasture, an arable cropping rotation, and chemical fallow were fractionated (sand: 2000-50 μm; silt: 50-5 μm, and clay: < 5 μm). Biodegradability of the SOM in size fractions and whole soils was assessed in a laboratory mineralization study. The chemical composition of SOM was characterized by X-ray absorption near-edge structure (XANES) spectroscopy at the K-edge and its thermal stability was determined by analytical pyrolysis using a Rock-Eval pyrolyser. The mineralization bioassay showed that whole soils and soil fractions under fallow were less susceptible to biodegradation than other managements and that sand-associated organic matter was significantly more susceptible than that in the silt or clay fractions. Analysis by XANES showed accumulation of carboxylates and strong depletion of amides (protein) and aromatics in the fallow whole soil. Moreover, protein depletion was most significant in the sand fraction of the fallow soil. Sand fractions in fallow and cropped soils were, however, enriched in plant-derived phenols, aromatics and carboxylates compared to the sand fraction of pasture soils. In contrast, ketones, which have been identified as products of microbially-processed organic matter, were slightly enriched in the silt fraction of the pasture soil. These data suggest reduced inputs and cropping restrict the decomposition of plant residues and, without supplemental N additions, protein-N in

  17. Application of TAM III to study sensitivity of soil organic matter degradation to temperature

    NASA Astrophysics Data System (ADS)

    Vikegard, Peter; Barros, Nieves; Piñeiro, Verónica

    2014-05-01

    Traditionally, studies of soil biodegradation are based on CO2 dissipation rates. CO2 is a product of aerobic degradation of labile organic substrates like carbohydrates. That limits the biodegradation concept to just one of the soil organic matter fractions. This feature is responsible for some problems to settle the concept of soil organic matter (SOM) recalcitrance and for controversial results defining sensitivity of SOM to temperature. SOM consists of highly complex macromolecules constituted by fractions with different chemical nature and redox state affecting the chemical nature of biodegradation processes. Biodegradation of fractions more reduced than carbohydrates take place through metabolic pathways that dissipate less CO2 than carbohydrate respiration, that may not dissipate CO2, or that even may uptake CO2. These compounds can be considered more recalcitrant and with lower turnover times than labile SOM just because they are degraded at lower CO2 rates that may be just a consequence of the metabolic path. Nevertheless, decomposition of every kind of organic substrate always releases heat. For this reason, the measurement of the heat rate by calorimetry yields a more realistic measurement of the biodegradation of the SOM continuum. TAM III is one of the most recent calorimeters designed for directly measuring in real time the heat rate associated with any degradation process. It is designed as a multichannel system allowing the concomitant measurement of to up 24 samples at isothermal conditions or through a temperature scanning mode from 18 to 100ºC, allowing the continous measure of any sample at controlled non-isothermal conditions. The temperature scanning mode was tested in several soil samples collected at different depths to study their sensitivity to temperature changes from 18 to 35 ºC calculating the Q10 and the activation energy (EA) by the Arrhenius equation. It was attempted to associate the obtained EA values with the soil thermal

  18. Emotional Lability and Affective Synchrony in Borderline Personality Disorder

    PubMed Central

    Schoenleber, Michelle; Berghoff, Christopher R.; Tull, Matthew T.; DiLillo, David; Messman-Moore, Terri; Gratz, Kim L.

    2015-01-01

    Extant research on emotional lability in borderline personality disorder (BPD) has focused almost exclusively on lability of individual emotions or emotion types, with limited research considering how different types of emotions shift together over time. Thus, this study examined the temporal dynamics of emotion in BPD at the level of both individual emotions (i.e., self-conscious emotions [SCE], anger, and anxiety) and mixed emotions (i.e., synchrony between emotions). One hundred forty-four women from the community completed a diagnostic interview and laboratory study involving five emotion induction tasks (each of which was preceded and followed by a 5-min resting period or neutral task). State ratings of SCE, anger, and anxiety were provided at 14 time points (before and after each laboratory task and resting period). Hierarchical linear modeling results indicate that women with BPD reported greater mean levels of SCE and Anxiety (but not Anger), and greater lability of Anxiety. Women with BPD also exhibited greater variability in lability of all three emotions (suggestive of within-group differences in the relevance of lability to BPD). Results also revealed synchrony (i.e., positive relations) between each possible pair of emotions, regardless of BPD status. Follow-up regression analyses suggest the importance of accounting for lability when examining the role of synchrony in BPD, as the relation of SCE-Anger synchrony to BPD symptom severity was moderated by Anger and SCE lability. Specifically, synchronous changes in SCE and Anger were associated with greater BPD symptom severity when large shifts in SCE were paired with minor shifts in Anger. PMID:27362623

  19. Distinct Litter Stabilization Dynamics Pathways for Decomposition of Pine Needle and Fine Root Within Soil

    NASA Astrophysics Data System (ADS)

    Mambelli, S.; Filley, T. R.; Bird, J.; Dawson, T.; Torn, M. S.

    2008-12-01

    experiment while most lignin phenols for the humin from the root addition had greater 13C content than SFA. This indicates that molecular fragments of plant biopolymers can readily associate with both labile and stabilized SOM fractions. At the same time, these results suggest that distinct decomposition and stabilization pathways exist for litters, such as needles vs. roots, of different chemical quality.

  20. The effect of the labile organic fraction in food waste and the substrate/inoculum ratio on anaerobic digestion for a reliable methane yield.

    PubMed

    Kawai, Minako; Nagao, Norio; Tajima, Nobuaki; Niwa, Chiaki; Matsuyama, Tatsushi; Toda, Tatsuki

    2014-04-01

    Influence of the labile organic fraction (LOF) on anaerobic digestion of food waste was investigated in different S/I ratio of 0.33, 0.5, 1.0, 2.0 and 4.0g-VSsubstrate/g-VSinoculum. Two types of substrate, standard food waste (Substrate 1) and standard food waste with the supernatant (containing LOF) removed (Substrate 2) were used. Highest methane yield of 435ml-CH4g-VS(-1) in Substrate 1 was observed in the lowest S/I ratio, while the methane yield of the other S/I ratios were 38-73% lower than the highest yield due to acidification. The methane yields in Substrate 2 were relatively stable in all S/I conditions, although the maximum methane yield was low compared with Substrate 1. These results showed that LOF in food waste causes acidification, but also contributes to high methane yields, suggesting that low S/I ratio (<0.33) is required to obtain a reliable methane yield from food waste compared to other organic substrates. Copyright © 2014 Elsevier Ltd. All rights reserved.

  1. Characterization of plasma labile heme in hemolytic conditions

    PubMed Central

    Gouveia, Zélia; Carlos, Ana R.; Yuan, Xiaojing; Aires-da-Silva, Frederico; Stocker, Roland; Maghzal, Ghassan J.; Leal, Sónia S.; Gomes, Cláudio M.; Todorovic, Smilja; Iranzo, Olga; Ramos, Susana; Santos, Ana C.; Hamza, Iqbal; Gonçalves, João; Soares, Miguel P.

    2018-01-01

    Extracellular hemoglobin, a byproduct of hemolysis, can release its prosthetic heme groups upon oxidation. This produces metabolically active heme that is exchangeable between acceptor proteins, macromolecules and low molecular weight ligands, termed here labile heme. As it accumulates in plasma labile heme acts in a pro-oxidant manner and regulates cellular metabolism while exerting pro-inflammatory and cytotoxic effects that foster the pathogenesis of hemolytic diseases. Here, we developed and characterized a panel of heme-specific single domain antibodies (sdAbs) that together with a cellular-based heme reporter assay, allow for quantification and characterization of labile heme in plasma during hemolytic conditions. Using these approaches, we demonstrate that when generated during hemolytic conditions labile heme is bound to plasma molecules with an affinity higher than 10−7 m and that 2–8% (∼ 2–5 μm) of the total amount of heme detected in plasma can be internalized by bystander cells, termed here bioavailable heme. Acute, but not chronic, hemolysis is associated with transient reduction of plasma heme-binding capacity, that is, the ability of plasma molecules to bind labile heme with an affinity higher than 10−7 m. The heme-specific sdAbs neutralize the pro-oxidant activity of soluble heme in vitro, suggesting that these maybe used to counter the pathologic effects of labile heme during hemolytic conditions. Finally, we show that heme-specific sdAbs can be used to visualize cellular heme. In conclusion, we describe a panel of heme-specific sdAbs that when used with other approaches provide novel insights to the pathophysiology of heme. PMID:28783254

  2. Light and Heavy Fractions of Soil Organic Matter in Response to Climate Warming and Increased Precipitation in a Temperate Steppe

    PubMed Central

    Song, Bing; Niu, Shuli; Zhang, Zhe; Yang, Haijun; Li, Linghao; Wan, Shiqiang

    2012-01-01

    Soil is one of the most important carbon (C) and nitrogen (N) pools and plays a crucial role in ecosystem C and N cycling. Climate change profoundly affects soil C and N storage via changing C and N inputs and outputs. However, the influences of climate warming and changing precipitation regime on labile and recalcitrant fractions of soil organic C and N remain unclear. Here, we investigated soil labile and recalcitrant C and N under 6 years' treatments of experimental warming and increased precipitation in a temperate steppe in Northern China. We measured soil light fraction C (LFC) and N (LFN), microbial biomass C (MBC) and N (MBN), dissolved organic C (DOC) and heavy fraction C (HFC) and N (HFN). The results showed that increased precipitation significantly stimulated soil LFC and LFN by 16.1% and 18.5%, respectively, and increased LFC∶HFC ratio and LFN∶HFN ratio, suggesting that increased precipitation transferred more soil organic carbon into the quick-decayed carbon pool. Experimental warming reduced soil labile C (LFC, MBC, and DOC). In contrast, soil heavy fraction C and N, and total C and N were not significantly impacted by increased precipitation or warming. Soil labile C significantly correlated with gross ecosystem productivity, ecosystem respiration and soil respiration, but not with soil moisture and temperature, suggesting that biotic processes rather than abiotic factors determine variations in soil labile C. Our results indicate that certain soil carbon fraction is sensitive to climate change in the temperate steppe, which may in turn impact ecosystem carbon fluxes in response and feedback to climate change. PMID:22479373

  3. Comparison of SOM point densities based on different criteria.

    PubMed

    Kohonen, T

    1999-11-15

    Point densities of model (codebook) vectors in self-organizing maps (SOMs) are evaluated in this article. For a few one-dimensional SOMs with finite grid lengths and a given probability density function of the input, the numerically exact point densities have been computed. The point density derived from the SOM algorithm turned out to be different from that minimizing the SOM distortion measure, showing that the model vectors produced by the basic SOM algorithm in general do not exactly coincide with the optimum of the distortion measure. A new computing technique based on the calculus of variations has been introduced. It was applied to the computation of point densities derived from the distortion measure for both the classical vector quantization and the SOM with general but equal dimensionality of the input vectors and the grid, respectively. The power laws in the continuum limit obtained in these cases were found to be identical.

  4. Pharmacological ascorbate and ionizing radiation (IR) increase labile iron in pancreatic cancer☆

    PubMed Central

    Moser, Justin C.; Rawal, Malvika; Wagner, Brett A.; Du, Juan; Cullen, Joseph J.; Buettner, Garry R.

    2013-01-01

    Labile iron, i.e. iron that is weakly bound and is relatively unrestricted in its redox activity, has been implicated in both the pathogenesis as well as treatment of cancer. Two cancer treatments where labile iron may contribute to their mechanism of action are pharmacological ascorbate and ionizing radiation (IR). Pharmacological ascorbate has been shown to have tumor-specific toxic effects due to the formation of hydrogen peroxide. By catalyzing the oxidation of ascorbate, labile iron can enhance the rate of formation of hydrogen peroxide; labile iron can also react with hydrogen peroxide. Here we have investigated the magnitude of the labile iron pool in tumor and normal tissue. We also examined the ability of pharmacological ascorbate and IR to change the size of the labile iron pool. Although a significant amount of labile iron was seen in tumors (MIA PaCa-2 cells in athymic nude mice), higher levels were seen in murine tissues that were not susceptible to pharmacological ascorbate. Pharmacological ascorbate and irradiation were shown to increase the labile iron in tumor homogenates from this murine model of pancreatic cancer. As both IR and pharmacological ascorbate may rely on labile iron for their effects on tumor tissues, our data suggest that pharmacological ascorbate could be used as a radio-sensitizing agent for some radio-resistant tumors. PMID:24396727

  5. An ultrahigh-resolution mass spectrometry index to estimate natural organic matter lability

    PubMed Central

    D'Andrilli, Juliana; Cooper, William T; Foreman, Christine M; Marshall, Alan G

    2015-01-01

    Rationale Determining the chemical constituents of natural organic matter (NOM) by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICRMS) remains the ultimate measure for probing its source material, evolution, and transport; however, lability and the fate of organic matter (OM) in the environment remain controversial. FTICRMS-derived elemental compositions are presented in this study to validate a new interpretative method to determine the extent of NOM lability from various environments. Methods FTICRMS data collected over the last decade from the same 9.4 tesla instrument using negative electrospray ionization at the National High Magnetic Field Laboratory in Tallahassee, Florida, was used to validate the application of a NOM lability index. Solid-phase extraction cartridges were used to isolate the NOM prior to FTICRMS; mass spectral peaks were calibrated internally by commonly identified NOM homologous series, and molecular formulae were determined for NOM composition and lability analysis. Results A molecular lability boundary (MLB) was developed from the FTICRMS molecular data, visualized from van Krevelen diagrams, dividing the data into more and less labile constituents. NOM constituents above the MLB at H/C ≥1.5 correspond to more labile material, whereas NOM constituents below the MLB, H/C <1.5, exhibit less labile, more recalcitrant character. Of all marine, freshwater, and glacial environments considered for this study, glacial ecosystems were calculated to contain the most labile OM. Conclusions The MLB extends our interpretation of FTICRMS NOM molecular data to include a metric of lability, and generally ranked the OM environments from most to least labile as glacial > marine > freshwater. Applying the MLB is useful not only for individual NOM FTICRMS studies, but also provides a lability threshold to compare and contrast molecular data with other FTICRMS instruments that survey NOM from around the world. Copyright © 2015

  6. Transient acidosis while retrieving a fear-related memory enhances its lability

    PubMed Central

    Du, Jianyang; Price, Margaret P; Taugher, Rebecca J; Grigsby, Daniel; Ash, Jamison J; Stark, Austin C; Hossain Saad, Md Zubayer; Singh, Kritika; Mandal, Juthika; Wemmie, John A; Welsh, Michael J

    2017-01-01

    Attenuating the strength of fearful memories could benefit people disabled by memories of past trauma. Pavlovian conditioning experiments indicate that a retrieval cue can return a conditioned aversive memory to a labile state. However, means to enhance retrieval and render a memory more labile are unknown. We hypothesized that augmenting synaptic signaling during retrieval would increase memory lability. To enhance synaptic transmission, mice inhaled CO2 to induce an acidosis and activate acid sensing ion channels. Transient acidification increased the retrieval-induced lability of an aversive memory. The labile memory could then be weakened by an extinction protocol or strengthened by reconditioning. Coupling CO2 inhalation to retrieval increased activation of amygdala neurons bearing the memory trace and increased the synaptic exchange from Ca2+-impermeable to Ca2+-permeable AMPA receptors. The results suggest that transient acidosis during retrieval renders the memory of an aversive event more labile and suggest a strategy to modify debilitating memories. DOI: http://dx.doi.org/10.7554/eLife.22564.001 PMID:28650315

  7. Hot regions of labile and stable soil organic carbon in Germany - Spatial variability and driving factors

    NASA Astrophysics Data System (ADS)

    Vos, Cora; Jaconi, Angélica; Jacobs, Anna; Don, Axel

    2018-06-01

    Atmospheric carbon dioxide levels can be mitigated by sequestering carbon in the soil. Sequestration can be facilitated by agricultural management, but its influence is not the same on all soil carbon pools, as labile pools with a high turnover may be accumulated much faster but are also more vulnerable to losses. The aims of this study were to (1) assess how soil organic carbon (SOC) is distributed among SOC fractions on a national scale in Germany, (2) identify factors influencing this distribution and (3) identify regions with high vulnerability to SOC losses. The SOC content and proportion of two different SOC fractions were estimated for more than 2500 mineral topsoils (< 87 g kg-1 SOC) covering Germany, using near-infrared reflectance spectroscopy. Drivers of the spatial variability in SOC fractions were determined using the machine learning algorithm cforest. The SOC content and proportions of fractions were predicted with good accuracy (SOC content: R2 = 0.87-0.90; SOC proportions: R2 = 0.83; ratio of performance to deviation (RPD): 2.4-3.2). The main explanatory variables for the distribution of SOC among the fractions were soil texture, bulk soil C / N ratio, total SOC content and pH. For some regions, the drivers were linked to the land-use history of the sites. Arable topsoils in central and southern Germany were found to contain the highest proportions and contents of stable SOC fractions, and therefore have the lowest vulnerability to SOC losses. North-western Germany contains an area of sandy soils with unusually high SOC contents and high proportions of light SOC fractions, which are commonly regarded as representing a labile carbon pool. This is true for the former peat soils in this area, which have already lost and are at high risk of losing high proportions of their SOC stocks. Those black sands can, however, also contain high amounts of stable SOC due to former heathland vegetation and need to be treated and discussed separately from non

  8. Characterizing The Microbial Lability And Isotopic (14C, 13C) Signatures Of Marine Organic Matter With A Novel Culture Vessel System

    NASA Astrophysics Data System (ADS)

    Beaupre, S. R.; Mahmoudi, N.; Pearson, A.

    2016-02-01

    The rate at which non-living organic matter is respired in the ocean is an unconstrained and important property of the marine carbon cycle. Studies of inherent mineralization rates are complicated by the fact that marine organic matter is a mixture of compounds that vary in reactivity and concentration. While natural radiocarbon ages (14C, half-life = 5730 yr) have served as proxies for lability, they have not been used extensively to characterize that fraction of marine organic matter that is biologically accessible. To address this problem, we developed a novel batch culture system to monitor the time-dependent production rates and isotopic signatures of CO2 released during microbial degradation of natural organic matter. The system simulated a nepheloid layer by maintaining a slurry of decarbonated sediment and minimal media (M9) in a custom 2-liter culture vessel. The natural microbial community was allowed to develop within the sediment, and respired CO2 was continuously sparged from the medium with helium and oxygen, quantified in real time with an infrared gas analyzer, and isolated as a series of contiguous fractions for subsequent isotopic (∆14C, d13C) characterization. Control experiments indicated the accumulation of just 4.5 mg of background carbon per hour of continuous gas flow, which constituted ≤ 10 % of the respired carbon mass in each fraction. Since ∆14C values are conserved during molecular transformations, this low-blank system enables the detection of subtle shifts in the "age" of organic matter respired during the course of a culture experiment. Analyses of sediments from Falmouth, MA revealed both a variable CO2 production rate and an increase in post-bomb ∆14C values during a 10-day incubation. This suggests that the microbial lability of organic matter at this site decreased non-linearly with apparent 14C age, and that the least labile fraction observed was not more than 50 years old. These results underscore the complex

  9. Quantitative chemical exchange saturation transfer (qCEST) MRI--RF spillover effect-corrected omega plot for simultaneous determination of labile proton fraction ratio and exchange rate.

    PubMed

    Sun, Phillip Zhe; Wang, Yu; Dai, ZhuoZhi; Xiao, Gang; Wu, Renhua

    2014-01-01

    Chemical exchange saturation transfer (CEST) MRI is sensitive to dilute proteins and peptides as well as microenvironmental properties. However, the complexity of the CEST MRI effect, which varies with the labile proton content, exchange rate and experimental conditions, underscores the need for developing quantitative CEST (qCEST) analysis. Towards this goal, it has been shown that omega plot is capable of quantifying paramagnetic CEST MRI. However, the use of the omega plot is somewhat limited for diamagnetic CEST (DIACEST) MRI because it is more susceptible to direct radio frequency (RF) saturation (spillover) owing to the relatively small chemical shift. Recently, it has been found that, for dilute DIACEST agents that undergo slow to intermediate chemical exchange, the spillover effect varies little with the labile proton ratio and exchange rate. Therefore, we postulated that the omega plot analysis can be improved if RF spillover effect could be estimated and taken into account. Specifically, simulation showed that both labile proton ratio and exchange rate derived using the spillover effect-corrected omega plot were in good agreement with simulated values. In addition, the modified omega plot was confirmed experimentally, and we showed that the derived labile proton ratio increased linearly with creatine concentration (p < 0.01), with little difference in their exchange rate (p = 0.32). In summary, our study extends the conventional omega plot for quantitative analysis of DIACEST MRI. Copyright © 2014 John Wiley & Sons, Ltd.

  10. Soil CO2 emissions from Northern Andean páramo ecosystems: effects of fallow agriculture.

    PubMed

    Cabaneiro, Ana; Fernandez, Irene; Pérez-Ventura, Luis; Carballas, Tarsy

    2008-03-01

    The effects of fallow agriculture on soil organic matter (SOM) dynamics and CO2 emissions were assessed in the tropical Andean páramo ecosystem. Possible changes during the cultivation-fallow cycle were monitored in four areas of the Quebrada Piñuelas valley (Venezuela). Uncultivated soils and plots at different stages of a complete cultivation--fallow cycle were incubated, and SOM mineralization kinetics was determined. Soils exhibited a low SOM mineralization activity, total CO2 evolved never reaching 3% of soil carbon, pointing to a stabilized SOM. Potential soil CO2 effluxes differed significantly according to their plot aspect: northeast (NE)-aspect soils presented higher CO2 effluxes than southwest (SW)-aspect soils. Soil CO2 emissions decreased after ploughing as compared to virgin páramo; low CO2 effluxes were still observed during cropping periods, increasing progressively to reach the highest values after 4-5 y of fallow. In all cases, experimental C mineralization data was fitted to a double exponential kinetic model. High soil labile C pool variability was observed, and two different trends were identified: NE-oriented soils showed more labile C and a wider range of values than SW-facing soils. Labile C positively correlated with CO2 effluxes and negatively with its instantaneous mineralization rate. The instantaneous mineralization rate of the recalcitrant C pool positively correlated with %C evolved as CO2 and negatively with soil C and Al2O3 contents, suggesting the importance of aluminum on SOM stability. The CO2 effluxes from these ecosystems, as well as the proportion of soil C released to the atmosphere, seem to depend not only on the size of the labile C pool but also on the accessibility of the more stabilized SOM. Therefore, fallow agriculture produces moderate changes in SOM quality and temporarily alters the CO2 emission capacity of these soils.

  11. The Origin of DIRT (Detrital Input and Removal Treatments): the Legacy of Dr. Francis D. Hole

    NASA Astrophysics Data System (ADS)

    Townsend, K. L.; Lajtha, K.; Caldwell, B.; Sollins, P.

    2007-12-01

    Soil organic matter (SOM) plays a key role in the cycling and retention of nitrogen and carbon within soil. Both above and belowground detrital inputs determine the nature and quantity of SOM. Studies on detrital impacts on SOM dynamics are underway at several LTER, ILTER and LTER-affiliated sites using a common experimental design, Detrital Input and Removal Treatments (DIRT). The concept for DIRT was originally based on experimental plots established at the University of Wisconsin Arboretum by Dr. Francis D. Hole in 1956 to study the effects of detrital inputs on pedogenesis. These plots are located on two forested sites and two prairie sites within the arboretum. Manipulations of the forested sites include double litter, no litter and removal of the O and A horizons. Manipulations of the prairie sites include harvest, mulch, bare and burn. These original treatments have largely been maintained since 1956. After 40 years of maintenance, there were significant differences in soil carbon between the double and no litter plots. The double litter plots had increased by nearly 30% while the no litter plots had decreased over 50%. The original DIRT plots are now 50 years old and have been re-sampled, where possible, for total carbon and nitrogen, labile and recalcitrant carbon fractions, net and gross nitrogen mineralization rates, and SOM bioavailability through CO2 respiration. The soils were fractionated by density to examine the role of carbon in each density fraction. The mean age of carbon in each fraction was determined by radiocarbon dating. This sampling and analysis is of special significance because it provides a glimpse into the future SOM trajectories for the new DIRT sites: Harvard Forest (MA), Bousson (PA), Andrews Experimental Forest (OR) and Sikfokut (Hungary).

  12. Effects of lability of metal complex on free ion measurement using DMT.

    PubMed

    Weng, Liping; Van Riemsdijk, Willem H; Temminghoff, Erwin J M

    2010-04-01

    Very low concentrations of free metal ion in natural samples can be measured using the Donnan membrane technique (DMT) based on ion transport kinetics. In this paper, the possible effects of slow dissociation of metal complexes on the interpretation of kinetic DMT are investigated both theoretically and experimentally. The expressions of the lability parameter, Lgrangian , were derived for DMT. Analysis of new experimental studies using synthetic solution containing NTA as the ligand and Cu(2+) ions shows that when the ionic strength is low (fraction of labile species measured using other dynamic sensors (DGT, GIME) in several freshwaters, it is concluded that in most waters ion transport in DMT is controlled by diffusion in the membrane. Only in very soft waters (<0.7 mM Ca+Mg), the dissociation rate of natural metal complex may influence ion transport in DMT. In this case, neglecting this effect may lead to an underestimation of the free metal ion concentration measured.

  13. Oxidation-labile subfraction of human plasma low density lipoprotein isolated by ion-exchange chromatography.

    PubMed

    Shimano, H; Yamada, N; Ishibashi, S; Mokuno, H; Mori, N; Gotoda, T; Harada, K; Akanuma, Y; Murase, T; Yazaki, Y

    1991-05-01

    We isolated subfractions of human plasma low density lipoprotein (LDL) using ion-exchange chromatography. Plasma LDL from normolipidemic subjects were applied to a DEAE Sepharose 6B column. After elution of the bulk of LDL at 150 mM NaCl (the major fraction), the residual LDL was eluted at 500 mM NaCl and designated as the minor fraction. The minor fraction, only less than 1% of total LDL, tended to be somewhat similar in certain properties to oxidized LDL, e.g., an increased negative charge, higher protein/cholesterol ratio, and a higher flotation density than native LDL. These results were consistent with data reported by Avogaro et al. (1988. Arteriosclerosis. 8: 79-87). However, assays of 125I-labeled LDL binding activity for LDL receptors equal to that of the major fraction. Incorporation of [14C]oleate into cholesteryl ester [acyl-CoA:cholesterol acyltransferase (ACAT) activity] in mouse peritoneal macrophages incubated with the minor fraction was only slightly greater than that with the major fraction. Incubation of the minor fraction with 0.5 microM Cu2+ caused a remarkable stimulation of ACAT activity, while stimulation by the major fraction required incubation with 5 microM Cu2+, suggesting that the minor fraction was relatively labile to oxidation. The minor but definite presence of a plasma LDL subfraction more negative and susceptible to oxidation implicates the possibility of its association with atherogenesis.

  14. Repeated Labilization-Reconsolidation Processes Strengthen Declarative Memory in Humans

    PubMed Central

    Forcato, Cecilia; Rodríguez, María L. C.; Pedreira, María E.

    2011-01-01

    The idea that memories are immutable after consolidation has been challenged. Several reports have shown that after the presentation of a specific reminder, reactivated old memories become labile and again susceptible to amnesic agents. Such vulnerability diminishes with the progress of time and implies a re-stabilization phase, usually referred to as reconsolidation. To date, the main findings describe the mechanisms associated with the labilization-reconsolidation process, but little is known about its functionality from a biological standpoint. Indeed, two functions have been proposed. One suggests that destabilization of the original memory after the reminder allows the integration of new information into the background of the original memory (memory updating), and the other suggests that the labilization-reconsolidation process strengthens the original memory (memory strengthening). We have previously reported the reconsolidation of human declarative memories, demonstrating memory updating in the framework of reconsolidation. Here we deal with the strengthening function attributed to the reconsolidation process. We triggered labilization-reconsolidation processes successively by repeated presentations of the proper reminder. Participants learned an association between five cue-syllables and their respective response-syllables. Twenty-four hours later, the paired-associate verbal memory was labilized by exposing the subjects to one, two or four reminders. The List-memory was evaluated on Day 3 showing that the memory was improved when at least a second reminder was presented in the time window of the first labilization-reconsolidation process prompted by the earlier reminder. However, the improvement effect was revealed on Day 3, only when at least two reminders were presented on Day2 and not as a consequence of only retrieval. Therefore, we propose central concepts for the reconsolidation process, emphasizing its biological role and the parametrical constrains

  15. Construction of hierarchically porous metal–organic frameworks through linker labilization

    DOE PAGES

    Yuan, Shuai; Zou, Lanfang; Qin, Jun-Sheng; ...

    2017-05-25

    One major goal of metal–organic framework (MOF) research is the expansion of pore size and volume. Although many approaches have been attempted to increase the pore size of MOF materials, it is still a challenge to construct MOFs with precisely customized pore apertures for specific applications. W present a new method, namely linker labilization, to increase the MOF porosity and pore size, giving rise to hierarchical-pore architectures. Microporous MOFs with robust metal nodes and pro-labile linkers were initially synthesized. The mesopores were subsequently created as crystal defects through the splitting of a pro-labile-linker and the removal of the linker fragmentsmore » by acid treatment. We also demonstrate that linker labilization method can create controllable hierarchical porous structures in stable MOFs, which facilitates the diffusion and adsorption process of guest molecules to improve the performances of MOFs in adsorption and catalysis.« less

  16. Construction of hierarchically porous metal-organic frameworks through linker labilization

    NASA Astrophysics Data System (ADS)

    Yuan, Shuai; Zou, Lanfang; Qin, Jun-Sheng; Li, Jialuo; Huang, Lan; Feng, Liang; Wang, Xuan; Bosch, Mathieu; Alsalme, Ali; Cagin, Tahir; Zhou, Hong-Cai

    2017-05-01

    A major goal of metal-organic framework (MOF) research is the expansion of pore size and volume. Although many approaches have been attempted to increase the pore size of MOF materials, it is still a challenge to construct MOFs with precisely customized pore apertures for specific applications. Herein, we present a new method, namely linker labilization, to increase the MOF porosity and pore size, giving rise to hierarchical-pore architectures. Microporous MOFs with robust metal nodes and pro-labile linkers were initially synthesized. The mesopores were subsequently created as crystal defects through the splitting of a pro-labile-linker and the removal of the linker fragments by acid treatment. We demonstrate that linker labilization method can create controllable hierarchical porous structures in stable MOFs, which facilitates the diffusion and adsorption process of guest molecules to improve the performances of MOFs in adsorption and catalysis.

  17. Construction of hierarchically porous metal–organic frameworks through linker labilization

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yuan, Shuai; Zou, Lanfang; Qin, Jun-Sheng

    One major goal of metal–organic framework (MOF) research is the expansion of pore size and volume. Although many approaches have been attempted to increase the pore size of MOF materials, it is still a challenge to construct MOFs with precisely customized pore apertures for specific applications. W present a new method, namely linker labilization, to increase the MOF porosity and pore size, giving rise to hierarchical-pore architectures. Microporous MOFs with robust metal nodes and pro-labile linkers were initially synthesized. The mesopores were subsequently created as crystal defects through the splitting of a pro-labile-linker and the removal of the linker fragmentsmore » by acid treatment. We also demonstrate that linker labilization method can create controllable hierarchical porous structures in stable MOFs, which facilitates the diffusion and adsorption process of guest molecules to improve the performances of MOFs in adsorption and catalysis.« less

  18. Non-labile silver species in biosolids remain stable throughout ...

    EPA Pesticide Factsheets

    Increasing commercial use of nanosilver has focussed attention on the fate of silver (Ag) in the wastewater release pathway. This paper reports the speciation and lability of Ag in archived, stockpiled, and contemporary biosolids from the UK, USA and Australia, and indicates that biosolids Ag concentrations have decreased significantly over recent decades. XANES revealed the importance of reduced-sulfur binding environments for Ag speciation in materials ranging from freshly produced sludge to biosolids weathered under ambient environmental conditions for more than 50 years. Isotopic dilution with 110mAg showed that Ag was predominantly non-labile in both fresh and aged biosolids (13.7% mean lability), with E-values ranging from 0.3 to 60 mg/kg and 5 mM CaNO3 extractable Ag from 1.2 to 609 µg/kg (0.002 - 3.4% of the total Ag). This study indicates that at the time of soil application, biosolids Ag will be predominantly Ag-sulfides and characterised by low isotopic lability. This paper presents an overview of biosolids Ag chemistry in historic and contemporary biosolids sourced from the UK, USA and Australia from the 1950s until today by drawing on a unique collection of archived, stockpiled and contemporary biosolids samples. Characteristics of biosolids Ag chemistry determined in this study included total Ag measurement by neutron activation analysis (NAA); the assessment of Ag lability by 110mAg isotopic dilution (E-values); and Ag speciation by X-ray Absorp

  19. Freshwater processing of terrestrial dissolved organic matter: What governs lability?

    NASA Astrophysics Data System (ADS)

    D'Andrilli, J.; Smith, H. J.; Junker, J. R.; Scholl, E. A.; Foreman, C. M.

    2016-12-01

    Aquatic and terrestrial ecosystems are linked through the transfer of energy and materials. Allochthonous organic matter (OM) is central to freshwater ecosystem function, influencing local food webs, trophic state, and nutrient availability. In order to understand the nature and fate of OM from inland headwaters to the open ocean, it is imperative to understand the links between OM lability and ecosystem function. Thus, biological, chemical, and physical factors need to be evaluated together to inform our understanding of environmental lability. We performed a laboratory processing experiment on naturally occurring OM leachates from riparian leaves, grasses, and pine needles. Measures of water chemistry, OM optical and molecular characterization, bacterial abundances, microbial assemblage composition, respiration, and C:N:P were integrated to discern the nature and fate of labile and recalcitrant OM in a freshwater stream. Peak processing of all OM sources in the stream water occurred after two days, with spikes in bacterial cell abundances, respiration rates, microbial assemblage shifts, and maximum C utilization. Respiration rates and microbial assemblages were dependent on the degree of lability of the OM molecular composition. Within the first few days, no differences in respiration rates were observed between leachate sources, however, beyond day five, the rates diverged with C processing efficiency correlated with OM lability. Originally comprised of amino acid-like, labile fluorescent species, the inoculated stream water OM became more recalcitrant after 16 days, indicating humification processing over time. Our study highlights the importance of interdisciplinary approaches for understanding the processing and fate of OM in aquatic ecosystems.

  20. Amino Acid Enantiomeric Ratios in Semi-Labile vs. Refractory Dissolved Organic Matter: Implications for a Microbial N Pump

    NASA Astrophysics Data System (ADS)

    Bour, A. L.; Broek, T.; Gier, E. J.; Mccarthy, M. D.

    2016-02-01

    Microbes are key moderators in the cycling of marine dissolved organic matter (DOM), most of which remains unidentifiable at the molecular level. A major current question, however, is to what degree heterotrophic bacteria directly mediate C and N sequestration in the deep sea. Amino acids (AA) represent almost all organic N that can be identified at the molecular level, while D-AA enantiomers represent unique source-specific biomarkers for prokaryotes, known to be highly enriched in ocean DOM. If increasing bacterial-sourced material ultimately leads to millennial scale sequestration of refractory DOM (RDOM), then one would expect a clear correlation between bacterial biomarkers and DOM radiocarbon (Δ14C) ages, in particular in the deep sea. Here we directly test this idea for the first time, by measuring D-AA abundance and distribution in isolated Δ14C young vs. old DOM from the central north pacific gyre. We used a coupled ultrafiltration/solid phase extraction approach to isolate semi-labile vs. RDOM, based on known molecular weight and Δ14C age correlations. The Δ14C ages of isolated material ranged from 205-275 ybp for surface semi-labile DOM, to 6680-6740 ybp for deep ocean RDOM. We measured enantiomeric (D/L) AA ratios, as well as AA molar percentages to estimate traditional degradation parameters (DI and RI), in semi-labile vs. RDOM fractions from the surface to deep ocean at HOT, Station ALOHA. We interpret our results in terms of the hypothesis of a microbial N pump, examining the similarity of microbial source signatures (D/L distributions) and calculated organic N contributions from heterotrophic bacteria, in the context of the Δ14C age of each fraction. Finally, we also evaluate these data vs. common AA molar percentage based indices of degradation.

  1. The Role of Priming in the Development of Stable and Radioactive Carbon Isotope Profiles of Soil Organic Matter

    NASA Astrophysics Data System (ADS)

    Serach, L.; Breecker, D.

    2017-12-01

    The stability of soil carbon (C) is one of the largest sources of uncertainty in global C cycle models and is central to identifying potential feedbacks to a warming climate. The role that more stable soil organic matter (SOM) pools could have in these feedbacks is highly uncertain. Stable C isotope (δ13C) and radiocarbon (14C) SOM profiles are used to understand the processes involved in soil C stabilization. In this study, we use a 1-dimensional, 3 pool soil C model to simulate the development of SOM δ13C and 14C profiles in a well-drained forest soil. Under the simplest model scenario where decomposition rate constants for each SOM pool remain fixed, model runs exhibit a buildup of slowly degrading C in the shallow subsurface (0-5cm) where fresh, labile C typically dominates in natural soils. Additionally, magnitudes of trends in SOM δ13C and 14C profiles were inconsistent with those observed in natural profiles, suggesting a deficiency in this version of the model. We hypothesize that the observed disparity between modeled and natural profiles is due to the absence of priming in the model. Priming effects presume a change in decomposition rate constants for recalcitrant C pools upon the addition of labile C to the soil. As such, priming effects were simulated in the model by making decomposition rate constants a function of labile C input (e.g., root C and leaf litter). The incorporation of priming into the model yields larger, more realistic shifts in SOM δ13C profiles and trends in 14C profiles that vary based on the sensitivity of recalcitrant pools to labile C addition. So far, the results from this study support the hypothesis that SOM δ13C and 14C profiles cannot be explained without priming. These results highlight the importance of priming to our understanding of the persistence of stable C in the soil and our ability to use SOM δ13C and 14C trends as a means to quantify C stability.

  2. Do Variations in Detrital Inputs Influence Stable Soil Organic Matter? - An Experimental Approach

    NASA Astrophysics Data System (ADS)

    Lajtha, K.; Townsend, K.; Brewer, E.; Caldwell, B.; Kalbitz, K.; Plante, A.

    2007-12-01

    Recognition of the importance of feedbacks from plants in determining soil nutrient dynamics and C storage led to a large number of litter decomposition studies. Despite growing knowledge of short-term litter dynamics, we know relatively little about the fate of plant litter and its role in determining SOM content and nutrient cycling over time scales ranging from decades and centuries. To address this gap, we established long-term studies of controls on soil organic matter formation in an old-growth forest at the H.J. Andrews Experimental Forest, OR. This study complements a network of recently established similar experiments that pan climatic and soil gradients, as well as the original DIRT experiment established in the Wisconsin Arboretum in 1956 in both grassland and forested sites. The central goal of the DIRT project is to assess how rates and sources of plant litter inputs control the accumulation and dynamics of organic matter and nutrients in forest soils over decadal time scales. Treatment plots include doubled litter (needle) inputs , doubled wood, no above ground litter (screened) inputs, no root inputs (trenched), and no inputs (screened and trenched). For the 50th anniversary of the Wisconsin sites and the 10th anniversary of the H.J. Andrews site, we used sequential density fractionation of soils from all treatments to determine if adding or removing either below- or above-ground litter inputs influenced carbon stabilization as soil organic matter. After 50 years, double litter plots in both prairie and forested soils had higher %C in the 0-10 cm horizon. In the forested site, plots showed increased C content of the lightest fraction, which represents relatively young SOM with a short turnover time. However, the first two heavy fractions also showed increases in C with added aboveground litter, suggesting the importance of aboveground litter inputs to SOM in the forest. No such pattern existed for the prairie soil, and we hypothesize that this is

  3. Fate and lability of silver in soils: Effect of ageing

    EPA Science Inventory

    The fate and lability of added soluble Ag in soils over time was examined by measurement of labile metal (E-value) by isotopic dilution using the 110mAg radioactive isotope and the solid-phase speciation of Ag by X-ray absorption near edge structure (XANES) spectrosco...

  4. Seasonal Dynamics of Soil Labile Organic Carbon and Enzyme Activities in Relation to Vegetation Types in Hangzhou Bay Tidal Flat Wetland

    PubMed Central

    Shao, Xuexin; Yang, Wenying; Wu, Ming

    2015-01-01

    Soil labile organic carbon and soil enzymes play important roles in the carbon cycle of coastal wetlands that have high organic carbon accumulation rates. Soils under three vegetations (Phragmites australis, Spartina alterniflora, and Scirpusm mariqueter) as well as bare mudflat in Hangzhou Bay wetland of China were collected seasonally. Seasonal dynamics and correlations of soil labile organic carbon fractions and soil enzyme activities were analyzed. The results showed that there were significant differences among vegetation types in the contents of soil organic carbon (SOC) and dissolved organic carbon (DOC), excepting for that of microbial biomass carbon (MBC). The P. australis soil was with the highest content of both SOC (7.86 g kg-1) and DOC (306 mg kg-1), while the S. mariqueter soil was with the lowest content of SOC (6.83 g kg-1), and the bare mudflat was with the lowest content of DOC (270 mg kg-1). Soil enzyme activities were significantly different among vegetation types except for urease. The P. australis had the highest annual average activity of alkaline phosphomonoesterase (21.4 mg kg-1 h-1), and the S. alterniflora had the highest annual average activities of β-glycosidase (4.10 mg kg-1 h-1) and invertase (9.81mg g-1 24h-1); however, the bare mudflat had the lowest activities of alkaline phosphomonoesterase (16.2 mg kg-1 h-1), β-glycosidase (2.87 mg kg-1 h-1), and invertase (8.02 mg g-1 24h-1). Analysis also showed that the soil labile organic carbon fractions and soil enzyme activities had distinct seasonal dynamics. In addition, the soil MBC content was significantly correlated with the activities of urease and β-glucosidase. The DOC content was significantly correlated with the activities of urease, alkaline phosphomonoesterase, and invertase. The results indicated that vegetation type is an important factor influencing the spatial-temporal variation of soil enzyme activities and labile organic carbon in coastal wetlands. PMID:26560310

  5. Twenty Years of Litter and Root Manipulations: Insights into Multi-Decadal SOM Dynamics and Controls

    NASA Astrophysics Data System (ADS)

    Wig, J.; Lajtha, K.; Nadelhoffer, K. J.

    2012-12-01

    Reforestation, reducing deforestation, and sustainable forest management are often recommended by policy makers to mitigate the greenhouse gas contributions of the forestry sector. However, underlying many of these policy recommendations is the assumption that increasing above-ground carbon stocks corresponds to long-term increases in ecosystem carbon stocks, the majority of which is stored in soils. We analyzed soil carbon and nitrogen dynamics in forest soils that had undergone twenty years of continuous manipulations of above- and below-ground organic inputs as part of the Detritus Input and Removal Treatment (DIRT) network. Although we expected that increased C inputs would correspond to significantly elevated C in surface mineral soils, our data suggest that increasing above-ground litter inputs has had a positive priming effect in this soil. Positive priming occurs when increased rates of litter addition to soil lead to disproportionate increases in microbial respiration rates of native soil C, resulting in a net decrease of soil C. Soil respiration rates in a year-long laboratory incubation support this theory: increased above-ground litter inputs led to decreased respiration rates, suggesting a relative deficit of labile organic matter. Removal of below ground inputs, either with or without above-ground litter inputs, also led to decreased respiration in laboratory incubations, demonstrating the importance of fresh root inputs to labile C. Trends in non-hydrolyzable C fractions, a proxy for the more stable C pool, agree with our respiration measurements. Data from sequential density fractionation are consistent with the hypotheses that priming has occurred in response to increased above-ground litter inputs and that root inputs are an important control of the labile C pool. The importance of roots inputs for C stabilization is well documented in the literature, and our hypothesis that increased above-ground litter inputs leads to priming is supported by

  6. Land use Effects on Storage, Stability and Structure of Organic Carbon in Soil Density Fractions Revealed by 13C Natural Abundance and CPMAS 13C NMR

    NASA Astrophysics Data System (ADS)

    Flessa, H.; Helfrich, M.; John, B.; Yamashita, T.; Ludwig, B.

    2004-12-01

    The type of land use and soil cultivation are important factors controlling organic carbon storage (SOC) in soils and they can also influence the relative importance, the structure, and the stability of different SOC pools. The objectives of our study were: i) to quantify the SOC stocks in different density fractions (mineral-associated soil organic matter > 2 g cm-3 (Mineral-SOM), free particulate organic matter < 1.6 g cm-3 (free POM), light occluded particulate organic matter < 1.6 g cm-3 (occluded POM<1.6) and dense occluded particulate organic matter 1.6 to 2.0 g cm-3 (occluded POM1.6-2.0)) of silty soils under different land use (spruce forest, grassland, maize, wheat), ii) to determine the structure of these SOC fractions by CPMAS 13C NMR spectroscopy, and iii) to analyse the stability of these SOC fractions in the maize soil on the basis of the stable isotope composition of SOC. The SOC concentration in the A horizon increased in the order wheat (12.7 g kg-1) < maize (13.0 g kg-1) < grassland (24.5 g kg-1) < spruce (40.5 g kg-1). The major part (86-91%) of the SOC was associated with the heavy mineral fraction at the grassland, maize and wheat site. In the A horizon of the spruce soil, the particulate organic matter accounted for 52% of the total SOC content. The chemical structure of the soil organic matter (SOM) was influenced by litter quality, the intensity of litter decomposition and the related production and storage of microbially-derived substances. SOM of the acid forest soil was characterized by large amounts of POM with a high content of spruce litter-derived alkyl C. In the biologically more active grassland and maize soil, litter-derived POM was decomposed more rapidly and SOC stocks were dominated by mineral-associated SOM which contained greater proportions of aryl and carbonyl C. The cultivation of the grassland soil induced enhanced mineralization of POM and in particular of mineral-associated SOM. The faster SOC turnover was associated

  7. Uranium release from different size fractions of sediments in Hanford 300 area, Washington, USA.

    PubMed

    Du, Jiangkun; Bao, Jianguo; Hu, Qinhong; Ewing, Robert P

    2012-05-01

    Stirred-flow cell tests were carried out to investigate uranium (U) release from different size fractions of sediments from the U.S. Department of Energy's Hanford 300 Area in Washington, USA. Results show that the measured concentration of U release varies with different size fractions, with the fine-grained mass fractions (<75 μm, 75-500 μm, and 500-2000 μm) being the main U carriers. However, because the sediment is mainly composed of gravel (2000-8000 μm) materials, the gravel fraction is a non-negligible U pool. Our elution experiments give a value of 8.7% of the total U being in the gravel fraction, significantly reducing the current uncertainty in evaluating U inventory. A log-log plot of released U concentration vs. elution volume (i.e., elution time) shows a power-law relationship for all size fractions, with identical exponents for the three fine size fractions (-0.875). For the <2000 μm mass fraction, comparing our eluted U values with reported total U concentrations, we estimate that a lower bound value 8.6% of the total uranium is labile. This compares well with the previously published value of 11.8% labile U after extraction with a dilute extractant for three weeks. Copyright © 2012 Elsevier Ltd. All rights reserved.

  8. Memory expression is independent of memory labilization/reconsolidation.

    PubMed

    Barreiro, Karina A; Suárez, Luis D; Lynch, Victoria M; Molina, Víctor A; Delorenzi, Alejandro

    2013-11-01

    There is growing evidence that certain reactivation conditions restrict the onset of both the destabilization phase and the restabilization process or reconsolidation. However, it is not yet clear how changes in memory expression during the retrieval experience can influence the emergence of the labilization/reconsolidation process. To address this issue, we used the context-signal memory model of Chasmagnathus. In this paradigm a short reminder that does not include reinforcement allows us to evaluate memory labilization and reconsolidation, whereas a short but reinforced reminder restricts the onset of such a process. The current study investigated the effects of the glutamate antagonists, APV (0.6 or 1.5 μg/g) and CNQX (1 μg/g), prior to the reminder session on both behavioral expression and the reconsolidation process. Under conditions where the reminder does not initiate the labilization/reconsolidation process, APV prevented memory expression without affecting long-term memory retention. In contrast, APV induced amnesic effects in the long-term when administered before a reminder session that triggers reconsolidation. Under the present parametric conditions, the administration of CNQX prior to the reminder that allows memory to enter reconsolidation impairs this process without disrupting memory expression. Overall, the present findings suggest that memory reactivation--but not memory expression--is necessary for labilization and reconsolidation. Retrieval and memory expression therefore appear not to be interchangeable concepts. Copyright © 2013 Elsevier Inc. All rights reserved.

  9. The Importance of CO2 Utilizing Chemolithoautotrophic Microorganisms for Carbon Sequestration and Isotope Signatures of SOM in Tropical Rainforest Soils

    NASA Astrophysics Data System (ADS)

    Nowak, M. E.; Behrendt, T.; Quesada, B.; Yanez Serrano, A. M.; Trumbore, S.

    2015-12-01

    Soil organic matter (SOM) is a major compartment of the tropical carbon cycle with up to 26 % of global carbon stocks stored in tropical soils. Understanding factors and processes driving SOM dynamics under changing climate conditions is crucial for predicting the role of tropical forest ecosystems to act as a carbon sink or source. Soil microorganisms are major drivers of the belowground carbon cycle by releasing CO2 by soil respiration but also by stabilizing and storing SOM, as indicated by recent research. Our investigations focus on chemolithoautotrophic microorganisms, a group that relies on CO2 as their carbon source. Chemolithoautotrophic microorganisms have been shown to be highly abundant in soils, whereas their role in SOM sequestration is still poorly understood. In tropical soils, the activity of chemolithoautotropic microbes might be important for generating and stabilizing carbon, especially in the deeper soil, which is rich in CO2 and reduced energy sources like Fe2+. They further might impact carbon isotope signatures (13C and 14C) of SOM, because of enzymatic fractionation during carboxylation and the use of carbon, which has a distinct isotopic composition than other carbon sources at the same depth. In order to study the activity of chemolithoautotropic microbes and their importance for SOM, we conducted isotope and isotope-labelling studies, gas measurements as well as molecular analyses at soils from the Atto site from 0 to 1 meter depth. These soils are classified as Ferralsols and Alisols and represent the most abundant soil types in the Amazon. With this we will be able to gain knowledge about the function and identity of an important group of microorganisms and their contribution to crucial biogeochemical cycles in the world`s most important ecosystem.

  10. Total and labile metals in surface sediments of the tropical river-estuary system of Marabasco (Pacific coast of Mexico): Influence of an iron mine.

    PubMed

    Marmolejo-Rodríguez, Ana Judith; Prego, Ricardo; Meyer-Willerer, Alejandro; Shumilin, Evgueni; Cobelo-García, Antonio

    2007-01-01

    Marabasco is a tropical river-estuary system comprising the Marabasco river and the Barra de Navidad Lagoon. The river is impacted by the Peña Colorada iron mine, which produces 3.5 million tons of pellets per year. Thirteen surface sediment samples were collected in May 2005 (dry season) in order to establish background levels of Al, Cd, Co, Cu, Fe, Ni, Pb, and Zn in the system and to ascertain the potential mobility of metals in the sediments. Analyses were carried out in the fraction finer than 63 microm, and labile metals extracted according the BCR procedure. Certified reference materials were used for validation of methods. Total concentrations of Cd, Co, Cu, Ni, Pb, and Zn were in the range of 0.05-0.34, 6-95, 0.7-31, 9-26, 2-18, and 53-179 mgkg(-1), respectively; Al and Fe ranges of 24-127, and 26-69 mgg(-1) correspondingly. Cadmium was found to be significantly labile in the sediments (20-100%), followed by Co (0-35%), Ni (3-16%) and Zn (0-25%), whereas the labile fraction for Cu, Fe and Pb was almost negligible (<4%). According with the total metal concentrations, background levels and normalised enrichment factors (NEF) of the metals studied, the impact of the Peña Colorada iron mine on the Marabasco system is lower than expected when compared with other similar World systems influenced by mining activities.

  11. Phosphorous fractions in soils of rubber-based agroforestry systems: Influence of season, management and stand age.

    PubMed

    Liu, Chenggang; Jin, Yanqiang; Liu, Changan; Tang, Jianwei; Wang, Qingwei; Xu, Mingxi

    2018-03-01

    Rubber-based agroforestry system is a vital management practice and its productivity is often controlled by soil phosphorus (P) nutrient, but little information is available on P fractions dynamics in such system. The aim of this study was to examine the seasonal, management and stand age effects on P fractions, acid phosphatase activity, microbial biomass P, other physical-chemical properties and litter and roots in four systems: 10-year-old rubber mono- (YM) and intercropping (YI) with N-fixing species (NFS), 22-year-old mono- (MM) and intercropping (MI) in Xishuangbanna, Southwestern China. Most P fractions varied seasonally at different depths, with highest values in the fog-cool season (i.e. labile P at 5-60cm, non-labile P and total P at 30-60cm). By contrast, moderately labile P varied little over time, except in MI that had lower values in the rainy season. Compared with their monoculture counterparts, YI doubled resin-P i concentration but decreased NaHCO 3 -extractable P, HCl-P i and residual-P o at the 0-30cm depth, whereas MI had hardly any changes in P species at the 60-cm depth. Surprisingly, residual-P o was enriched down to the deepest soil (30-60cm) in both YI and MI in the fog-cool season. All P fractions, except NaOH 0.1 -P i , were greatly reduced with increasing stand age. In addition to plants uptake, these changes can be explained by seasonality in soil environments (e.g. moisture, temperature, pH and microbial activity) and decomposition of litter and roots. Moreover, YI decreased labile P o stock, but MI increased moderately labile P i at the 60-cm depth across seasons. The results imply that a large amount of residual-P o exists in acidic Oxisol from China and that they can be reasonably exploited to reduce the application of P fertilizers, highlighting the importance of P o pool. Taken together, intercropping mature rubber plantation with NFS appears to be an effective way to enhance productivity while maintaining adequate soil P

  12. Self-organizing map (SOM) of space acceleration measurement system (SAMS) data.

    PubMed

    Sinha, A; Smith, A D

    1999-01-01

    In this paper, space acceleration measurement system (SAMS) data have been classified using self-organizing map (SOM) networks without any supervision; i.e., no a priori knowledge is assumed regarding input patterns belonging to a certain class. Input patterns are created on the basis of power spectral densities of SAMS data. Results for SAMS data from STS-50 and STS-57 missions are presented. Following issues are discussed in details: impact of number of neurons, global ordering of SOM weight vectors, effectiveness of a SOM in data classification, and effects of shifting time windows in the generation of input patterns. The concept of 'cascade of SOM networks' is also developed and tested. It has been found that a SOM network can successfully classify SAMS data obtained during STS-50 and STS-57 missions.

  13. Self-organizing map (SOM) of space acceleration measurement system (SAMS) data

    NASA Technical Reports Server (NTRS)

    Sinha, A.; Smith, A. D.

    1999-01-01

    In this paper, space acceleration measurement system (SAMS) data have been classified using self-organizing map (SOM) networks without any supervision; i.e., no a priori knowledge is assumed regarding input patterns belonging to a certain class. Input patterns are created on the basis of power spectral densities of SAMS data. Results for SAMS data from STS-50 and STS-57 missions are presented. Following issues are discussed in details: impact of number of neurons, global ordering of SOM weight vectors, effectiveness of a SOM in data classification, and effects of shifting time windows in the generation of input patterns. The concept of 'cascade of SOM networks' is also developed and tested. It has been found that a SOM network can successfully classify SAMS data obtained during STS-50 and STS-57 missions.

  14. Impact of Labile Zinc on Heart Function: From Physiology to Pathophysiology

    PubMed Central

    Turan, Belma; Tuncay, Erkan

    2017-01-01

    Zinc plays an important role in biological systems as bound and histochemically reactive labile Zn2+. Although Zn2+ concentration is in the nM range in cardiomyocytes at rest and increases dramatically under stimulation, very little is known about precise mechanisms controlling the intracellular distribution of Zn2+ and its variations during cardiac function. Recent studies are focused on molecular and cellular aspects of labile Zn2+ and its homeostasis in mammalian cells and growing evidence clarified the molecular mechanisms underlying Zn2+-diverse functions in the heart, leading to the discovery of novel physiological functions of labile Zn2+ in parallel to the discovery of subcellular localization of Zn2+-transporters in cardiomyocytes. Additionally, important experimental data suggest a central role of intracellular labile Zn2+ in excitation-contraction coupling in cardiomyocytes by shaping Ca2+ dynamics. Cellular labile Zn2+ is tightly regulated against its adverse effects through either Zn2+-transporters, Zn2+-binding molecules or Zn2+-sensors, and, therefore plays a critical role in cellular signaling pathways. The present review summarizes the current understanding of the physiological role of cellular labile Zn2+ distribution in cardiomyocytes and how a remodeling of cellular Zn2+-homeostasis can be important in proper cell function with Zn2+-transporters under hyperglycemia. We also emphasize the recent investigations on Zn2+-transporter functions from the standpoint of human heart health to diseases together with their clinical interest as target proteins in the heart under pathological condition, such as diabetes. PMID:29137144

  15. Impact of Labile Zinc on Heart Function: From Physiology to Pathophysiology.

    PubMed

    Turan, Belma; Tuncay, Erkan

    2017-11-12

    Zinc plays an important role in biological systems as bound and histochemically reactive labile Zn 2+ . Although Zn 2+ concentration is in the nM range in cardiomyocytes at rest and increases dramatically under stimulation, very little is known about precise mechanisms controlling the intracellular distribution of Zn 2+ and its variations during cardiac function. Recent studies are focused on molecular and cellular aspects of labile Zn 2+ and its homeostasis in mammalian cells and growing evidence clarified the molecular mechanisms underlying Zn 2+ -diverse functions in the heart, leading to the discovery of novel physiological functions of labile Zn 2+ in parallel to the discovery of subcellular localization of Zn 2+ -transporters in cardiomyocytes. Additionally, important experimental data suggest a central role of intracellular labile Zn 2+ in excitation-contraction coupling in cardiomyocytes by shaping Ca 2+ dynamics. Cellular labile Zn 2+ is tightly regulated against its adverse effects through either Zn 2+ -transporters, Zn 2+ -binding molecules or Zn 2+ -sensors, and, therefore plays a critical role in cellular signaling pathways. The present review summarizes the current understanding of the physiological role of cellular labile Zn 2+ distribution in cardiomyocytes and how a remodeling of cellular Zn 2+ -homeostasis can be important in proper cell function with Zn 2+ -transporters under hyperglycemia. We also emphasize the recent investigations on Zn 2+ -transporter functions from the standpoint of human heart health to diseases together with their clinical interest as target proteins in the heart under pathological condition, such as diabetes.

  16. Phosphorus concentrations in sequentially fractionated soil samples as affected by digestion methods

    USDA-ARS?s Scientific Manuscript database

    Sequential fractionation has been used for several decades for improving our understanding on the effects of agricultural practices and management on the lability and bioavailability of phosphorus in soil, manure, and other soil amendments. Nevertheless, there have been no reports on how manipulatio...

  17. [Impact of Land Utilization Pattern on Distributing Characters of Labile Organic Carbon in Soil Aggregates in Jinyun Mountain].

    PubMed

    Li, Rui; Jiang, Chang-sheng; Hao, Qing-ju

    2015-09-01

    Four land utilization patterns were selected for this study in Jinyun mountain, including subtropical evergreen broad-leaved forest (abbreviation: forest), sloping farmland, orchard and abandoned land. Soil samples were taken every 10 cm in the depth of 60 cm soil and proportions of large macroaggregates (> 2 mm), small macroaggregates (0. 25-2 mm), microaggregates (0. 053 - 0. 25 mm) and silt + clay (<0. 053 mm) were obtained by wet sieving method to measure the content of organic carbon and labile organic carbon in each aggregate fraction and analyze impacts of land uses on organic carbon and labile organic carbon of soil aggregates. LOC content of four soil aggregates were significantly reduced with the increase of soil depth; in layers of 0-60 cm soil depth, our results showed that LOC contents of forest and abandoned land were higher than orchard and sloping farmland. Reserves of labile organic carbon were estimated by the same soil quality, it revealed that forest (3. 68 Mg.hm-2) > abandoned land (1. 73 Mg.hm-2) > orchard (1. 43 Mg.hm-2) >sloping farmland (0.54 Mg.hm-2) in large macroaggregates, abandoned land (7.77, 5. 01 Mg.hm-2) > forest (4. 96, 2.71 Mg.hm-2) > orchard (3. 33, 21. 10 Mg.hm-2) > sloping farmland (1. 68, 1. 35 Mg.hm-2) in small macroaggregates and microaggregates, and abandoned land(4. 32 Mg.hm-2) > orchard(4. 00 Mg.hm-2) > forest(3. 22 Mg.hm-2) > sloping farmland (2.37 Mg.hm-2) in silt + clay, forest and abandoned land were higher than orchard and sloping farmland in other three soil aggregates except silt + clay. It was observed that the level of organic carbon and labile organic carbon were decreased when bringing forest under cultivation to orchard or farmland, and augments on organic carbon and labile organic carbon were found after exchanging farmland to abandoned land. The most reverses of forest and abandoned land emerged in small macroaggregates, orchard and sloping farmland were in microaggregates. That was, during the

  18. DNA lability induced by nimustine and ramustine in rat glioma cells.

    PubMed Central

    Mineura, K; Fushimi, S; Itoh, Y; Kowada, M

    1988-01-01

    The DNA labile sites induced by two nitrosoureas, nimustine (ACNU) and ramustine (MCNU) synthesised in Japan, have been examined in highly reiterated DNA sequences of rat glioma cells. Reiterated fragments of 167 and 203 base pairs (bp), obtained after Hind III and Hae III restriction endonuclease digestion of rat glioma cells DNA, were used as target DNA sequences to determine the labile sites. In vitro reaction with ACNU and MCNU resulted in scission products corresponding to the locations of guanine. Subsequent piperidine hydrolysis produced more frequent breaks of the phosphodiester bonds at guanine positions, thus forming alkali-labile sites. Images PMID:3236017

  19. Native soil organic matter conditions the response of microbial communities to organic inputs with different stability

    NASA Astrophysics Data System (ADS)

    Yanardaǧ, Ibrahim H.; Zornoza, Raúl; Bastida, Felipe; Büyükkiliç-Yanardaǧ, Asuman; Acosta, Jose A.; García, Carlos; Faz, Ángel; Mermut, Ahmet R.

    2017-04-01

    The response of soil microbial communities from soils with different soil organic matter (SOM) content to organic inputs with different stability is still poorly understood. Thus, an incubation experiment was designed to study how the addition of pig slurry (PS), its manure (M) and its biochar (BC) affect soil microbial community and activity in three soils differing in SOM content (Regosol, Luvisol and Kastanozem). The evolution of different C and N fractions, microbial biomass C and N, enzyme activities and microbial community structure by the use of phospholipid fatty acid (PLFA) analysis was assessed for 60 days. Results showed that the different amendments had different effect on microbial properties depending on the soil type. The addition of M caused the highest increase in all microbial properties in the three soils, followed by PS. These changes were more intense in the soil with the lowest SOM (Regosol). The addition of M and PS caused changes in the microbial community structure in all soils, which were more related to the presence of available sources of N than to the labile fractions of C. The addition of BC was followed by increases in the proportions of fungi and Gram positive bacteria in the Regosol, while enhanced the proportion of actinobacteria in all soil types, related to increments in pH and soil C recalcitrance. Thus, native SOM determined the response of microbial communities to external inputs with different stability, soils with low SOM being more prone to increase microbial biomass and activity and change microbial community structure.

  20. [Effects of phosphorus sources on phosphorus fractions in rhizosphere soil of wild barley genotypes with high phosphorus utilization efficiency].

    PubMed

    Cai, Qiu-Yan; Zhang, Xi-Zhou; Li, Ting-Xuan; Chen, Guang-Deng

    2014-11-01

    High P-efficiency (IS-22-30, IS-22-25) and low P-efficiency (IS-07-07) wild barley cultivars were chosen to evaluate characteristics of phosphorus uptake and utilization, and properties of phosphorus fractions in rhizosphere and non-rhizosphere in a pot experiment with 0 (CK) and 30 mg P · kg(-1) supplied as only Pi (KH2PO4), only Po (phytate) or Pi + Po (KH2PO4+ phytate). The results showed that dry matter and phosphorus accumulation of wild barley in the different treatments was ranked as Pi > Pi + Po > Po > CK. In addition, dry matter yield and phosphorus uptake of wild barley with high P-efficiency exhibited significantly greater than that with low P-efficiency. The concentration of soil available phosphorus was significantly different after application of different phosphorus sources, which was presented as Pi > Pi + Po > Po. The concentration of soil available phosphorus in high P-efficiency wild barley was significantly higher than that of low P-efficiency in the rhizosphere soil. There was a deficit in rhizosphere available phosphorus of high P-efficiency wild barley, especially in Pi and Pi+Po treatments. The inorganic phosphorus fractions increased with the increasing Pi treatment, and the concentrations of inorganic phosphorus fractions in soil were sorted as follows: Ca10-P > O-P > Fe-P > Al-P > Ca2-P > Ca8-P. The contents of Ca2-P and Ca8-P for high P-efficiency wild barley showed deficits in rhizosphere soil under each phosphorus source treatment. In addition, enrichment of Al-P and Fe-P was observed in Pi treatment in rhizosphere soil. The concentrations of organic phosphorus fractions in soil were sorted as follows: moderate labile organic phosphorus > moderate resistant, resistant organic phosphorus > labile organic phosphorus. The labile and moderate labile organic phosphorus enriched in rhizosphere soil and the greatest enrichment appeared in Pi treatment. Furthermore, the concentrations of moderate resistant organic phosphorus and resistant

  1. Phosphorus concentrations in sequentially fractionated soil samples as affected by digestion methods

    USDA-ARS?s Scientific Manuscript database

    Sequential fractionation has been used for several decades for improving our understanding on the effects of agricultural practices and management on the lability and bioavailability of P in soil, manure, and other soil amendments. Nevertheless, there have been no reports on how manipulation of diff...

  2. Deep SOMs for automated feature extraction and classification from big data streaming

    NASA Astrophysics Data System (ADS)

    Sakkari, Mohamed; Ejbali, Ridha; Zaied, Mourad

    2017-03-01

    In this paper, we proposed a deep self-organizing map model (Deep-SOMs) for automated features extracting and learning from big data streaming which we benefit from the framework Spark for real time streams and highly parallel data processing. The SOMs deep architecture is based on the notion of abstraction (patterns automatically extract from the raw data, from the less to more abstract). The proposed model consists of three hidden self-organizing layers, an input and an output layer. Each layer is made up of a multitude of SOMs, each map only focusing at local headmistress sub-region from the input image. Then, each layer trains the local information to generate more overall information in the higher layer. The proposed Deep-SOMs model is unique in terms of the layers architecture, the SOMs sampling method and learning. During the learning stage we use a set of unsupervised SOMs for feature extraction. We validate the effectiveness of our approach on large data sets such as Leukemia dataset and SRBCT. Results of comparison have shown that the Deep-SOMs model performs better than many existing algorithms for images classification.

  3. Using operational and defined fractions to assess soil organic matter stabilization and structure

    NASA Astrophysics Data System (ADS)

    Horwath, W. R.

    2015-12-01

    Studies on soil organic matter (SOM) began with alkaline solvents revealing a dark colored substance that could be isolated under low pH. Further studies revealed fulvic and humic acids and humin fractions leading to theories on functional groups and metal-clay bridging mechanisms. The fate of isotopes in these fractions revealed soil carbon pools with varying turnover rates with half the soil carbon (C) in humin and acid hydrolyzed fractions over 1000 years old. These results are the basis of the three pool conceptual framework used in many biogeochemical models. Theories on the role of functional groups and compound classes further elaborated concepts on physical (aggregates) and chemical mechanisms of C stabilization. With the advance of analytical instrumentation, the operational fractions were further defined to the compound and molecular levels. These studies confirmed the majority of soil C is microbially derived. Our observation that all microbial groups contributed nonselectively to soil C maintenance independent of mineralogy suggests that compound characteristics within integrated structures are more important than the source of individual compounds for stabilizing soil C. In dissolved organic C floccing studies using Near Edge X-ray Fine Structure analysis, we found that aromatic compounds interacted first with Fe, however, the majority of direct bonds to Fe were polysaccharides, reinforcing that an integrative chemical structure rather than direct bonds imparted stability in organo-metal interactions. Using a novel differential scanning calorimeter coupled to an isotope ratio mass spectrometer setup, we confirmed that the presence of clays (independent of clay type) increased the microbial utilization of calcium stabilized high versus low temperature compounds, asserting that higher temperature compounds (i.e., phenolics) are likely less tightly bound by clay minerals. The integration of operational and defined fractions of SOM remains a legitimate

  4. Non-labile Soil Nitrogen Retention beneath Three Tree Species in a Tropical Plantation

    Treesearch

    Jason P. Kaye; Dan Binkley; Xiaoming Zou

    2002-01-01

    Soil organic matter is the largest sink for N additions to forests. Species composition may affect soilNretention by altering the amount or proportion of added N stored in non-labile organic pools. We measured 15N tracer retention in labile and non-labile pools of surface (0–20 cm) mineral soils, 7 yr after the tracer was applied to a 9 yr-old Puerto Rican tree...

  5. SA-SOM algorithm for detecting communities in complex networks

    NASA Astrophysics Data System (ADS)

    Chen, Luogeng; Wang, Yanran; Huang, Xiaoming; Hu, Mengyu; Hu, Fang

    2017-10-01

    Currently, community detection is a hot topic. This paper, based on the self-organizing map (SOM) algorithm, introduced the idea of self-adaptation (SA) that the number of communities can be identified automatically, a novel algorithm SA-SOM of detecting communities in complex networks is proposed. Several representative real-world networks and a set of computer-generated networks by LFR-benchmark are utilized to verify the accuracy and the efficiency of this algorithm. The experimental findings demonstrate that this algorithm can identify the communities automatically, accurately and efficiently. Furthermore, this algorithm can also acquire higher values of modularity, NMI and density than the SOM algorithm does.

  6. Maternal emotion socialization differentially predicts third-grade children's emotion regulation and lability.

    PubMed

    Rogers, Megan L; Halberstadt, Amy G; Castro, Vanessa L; MacCormack, Jennifer K; Garrett-Peters, Patricia

    2016-03-01

    Numerous parental emotion socialization factors have been implicated as direct and indirect contributors to the development of children's emotional competence. To date, however, no study has combined parents' emotion-related beliefs, behaviors, and regulation strategies in one model to assess their cumulative-as well as unique-contributions to children's emotion regulation. We considered the 2 components that have recently been distinguished: emotion regulation and emotional lability. We predicted that mothers' beliefs about the value of and contempt for children's emotions, mothers' supportive and nonsupportive reactions to their children's emotions, as well as mothers' use of cognitive reappraisal and suppression of their own emotions would each contribute unique variance to their children's emotion regulation and lability, as assessed by children's teachers. The study sample consisted of an ethnically and socioeconomically diverse group of 165 mothers and their third-grade children. Different patterns emerged for regulation and lability: Controlling for family income, child gender, and ethnicity, only mothers' lack of suppression as a regulatory strategy predicted greater emotion regulation in children, whereas mothers' valuing of children's emotions, mothers' lack of contempt for children's emotions, mothers' use of cognitive reappraisal to reinterpret events, and mothers' lack of emotional suppression predicted less lability in children. These findings support the divergence of emotion regulation and lability as constructs and indicate that, during middle childhood, children's lability may be substantially and uniquely affected by multiple forms of parental socialization. (c) 2016 APA, all rights reserved).

  7. Quantities and qualities of physical and chemical fractions of soil organic matter under a rye cover crop

    USDA-ARS?s Scientific Manuscript database

    To detect the effects of a rye cover crop on labile soil carbon, the light fraction, large particulate organic matter (POM), small POM, and two NaOH-extractable humic fractions were extracted from three depths of a corn soil in central Iowa having an overwinter rye cover crop treatment and a contro...

  8. Chemical Composition of Soil Horizons and Aggregate Size Fractions Under the Hawaiian Fern Dicranopteris and Angiosperm Cheirodendrom

    NASA Astrophysics Data System (ADS)

    Stewart, C. E.; Amatangelo, K.; Neff, J.

    2007-12-01

    Soil organic matter (SOM) inherits much of its chemical nature from the dominant vegetation, including phenolic (lignin-derived), aromatic, and aliphatic (cutin and wax-derived) compounds. However, relatively stable recalcitrant compounds may also be formed as a result of condensation and complexation reactions through decomposition and protected with association with mineral particles. The Hawaiian fern species Dicranopteris decomposes more slowly than the angiosperm, Cheirodendrom due to high concentrations of recalcitrant C compounds. These aliphatic fern leaf waxes are well-preserved and may comprise a large portion of the recalcitrant organic matter in these soils. Our objective was to determine the chemical composition of the SOM under the O- (litter-dominated) and the A- (mineral) horizons formed under fern and angiosperm vegetation. To determine the effect of mineral-association, we fractioned the soil into four size classes; 850-590 μm, 590-180 μm, 180-53 μm and <53 μm and characterized the SOM via pyrolysis-gas chromatography-mass spectrometry (py-GC/MS). As the soils developed from the O- to the A-horizon, there was a decrease of lignin-derived phenolic compounds and an increase in more recalcitrant, aromatic and aliphatic C. Soils under ferns had greater relative concentrations of phenolic compounds, while the angiosperms had greater concentrations of fatty-acid methyl esters and furans (some polysaccharide-derived). Differences between size fractions were most evident in the O-horizon of both species. Recalcitrant fern-derived cutin and leaf waxes (alkene and alkanes structures) occurred in the 180-53 μm fraction, which has been shown to be the most stable of the aggregate-size fractions. Soils developed under fern versus angiosperm vegetation have distinct chemical signatures, which likely determine the recalcitrance of the SOM.

  9. Collagenase-labile polyurethane urea synthesis and processing into hollow fiber membranes.

    PubMed

    Fu, Hui-Li; Hong, Yi; Little, Steven R; Wagner, William R

    2014-08-11

    As a means to stimulate wound healing, a hollow fiber membrane system might be placed within a wound bed to provide local and externally regulated controlled delivery of regenerative factors. After sufficient healing, it would be desirable to triggerably degrade these fibers as opposed to pulling them out. Accordingly, a series of enzymatically degradable thermoplastic elastomers was developed as potential hollow fiber base material. Polyurethane ureas (PUUs) were synthesized based on 1, 4-diisocyanatobutane, polycaprolactone (PCL) diol and polyethylene glycol (PEG) at different molar fractions as soft segments, and collagenase-sensitive peptide GGGLGPAGGK-NH2 as a chain extender (defined as PUU-CLxEGy-peptide, where x and y are the respective molar percents). In these polymers, PEG in the polymer backbone decreased tensile strengths and initial moduli of solvent-cast films in the wet state, while increasing water absorption. Collagenase degradation was observed at 75% relative PEG content in the soft segment. Control PUUs with putrescine or nonsense peptide chain extenders did not degrade acutely in collagenase. Conduits electrospun from PUU-CL25EG75-peptide and PUU-CL50EG50-peptide exhibited appropriate mechanical strength and sustained release of a model protein from the tube lumen for 7 days. Collapse of PUU-CL25EG75-peptide tubes occurred after collagenase degradation for 3 days. In conclusion, through molecular design, synthesis and characterization, a collagenase-labile PUU-CL25EG75-peptide polymer was identified that exhibited the desired traits of triggerable lability, processability, and the capacity to act as a membrane to facilitate controlled protein release.

  10. Influence of Multiple Environmental Factors on Organic Matter Chlorination in Podsol Soil.

    PubMed

    Svensson, Teresia; Montelius, Malin; Andersson, Malin; Lindberg, Cecilia; Reyier, Henrik; Rietz, Karolina; Danielsson, Åsa; Bastviken, David

    2017-12-19

    Natural chlorination of organic matter is common in soils. The abundance of chlorinated organic compounds frequently exceeds chloride in surface soils, and the ability to chlorinate soil organic matter (SOM) appears widespread among microorganisms. Yet, the environmental control of chlorination is unclear. Laboratory incubations with 36 Cl as a Cl tracer were performed to test how combinations of environmental factors, including levels of soil moisture, nitrate, chloride, and labile organic carbon, influenced chlorination of SOM from a boreal forest. Total chlorination was hampered by addition of nitrate or by nitrate in combination with water but enhanced by addition of chloride or most additions including labile organic matter (glucose and maltose). The greatest chlorination was observed after 15 days when nitrate and water were added together with labile organic matter. The effect that labile organic matter strongly stimulated the chlorination rates was confirmed by a second independent experiment showing higher stimulation at increased availability of labile organic matter. Our results highlight cause-effect links between chlorination and the studied environmental variables in podsol soil-with consistent stimulation by labile organic matter that did overrule the negative effects of nitrate.

  11. Soil organic matter in podzol horizons of the Amazon region: Humification, recalcitrance, and dating.

    PubMed

    Tadini, Amanda M; Nicolodelli, Gustavo; Senesi, Giorgio S; Ishida, Débora A; Montes, Célia R; Lucas, Yves; Mounier, Stéphane; Guimarães, Francisco E G; Milori, Débora M B P

    2018-02-01

    Characteristics of soil organic matter (SOM) are important, especially in the Amazon region, which represents one of the world's most relevant carbon reservoirs. In this work, the concentrations of carbon and differences in its composition (humification indexes) were evaluated and compared for several horizons (0 to 390cm) of three typical Amazonian podzol profiles. Fluorescence spectroscopy was used to investigate the humic acid (HA) fractions of SOM isolated from the different samples. Simple and labile carbon structures appeared to be accumulated in surface horizons, while more complex humified compounds were leached and accumulated in intermediate and deeper Bh horizons. The results suggested that the humic acids originated from lignin and its derivatives, and that lignin could accumulate in some Bh horizons. The HA present in deeper Bh horizons appeared to originate from different formation pathways, since these horizons showed different compositions. There were significant compositional changes of HA with depth, with four types of organic matter: recalcitrant, humified, and old dating; labile and young dating; humified and young dating; and little humified and old dating. Therefore, the humification process had no direct relation with the age of the organic matter in the Amazonian podzols. Copyright © 2017 Elsevier B.V. All rights reserved.

  12. Effects of labile carbon addition on a headwater stream food web

    Treesearch

    Heidi S. Wilcox; J. Bruce Wallace; Judy L. Meyer; Jonathan P. Benstead

    2005-01-01

    We added dextrose for two 8-week periods (summer and autumn) to a highly heterotrophic headwater stream in North Carolina, U.S.A., to examine the responses of its benthic food web to increased labile carbon. We hypothesized that addition of labile carbon would elevate microbial abundance and activity, resulting in greater resource availability and higher...

  13. Oxygen consumption and labile dissolved organic carbon uptake by benthic biofilms

    NASA Astrophysics Data System (ADS)

    de Falco, Natalie; Boano, Fulvio; Arnon, Shai

    2015-04-01

    Biogeochemical activity in streams is often magnified at interfaces, such as in the case of biofilm growth near the surface of the stream sediments. The objective of this study was to evaluate the relative importance of surficial biofilms versus the biofilm in the hyporheic zone to the processes of biodegradation of a labile dissolved organic carbon (DOC) and to oxygen consumption. Experiments were conducted in a recirculating flume, equipped with a drainage system that enables the control on losing and gaining fluxes. A surficial biofilm was developed over a sandy streambed with dune-shaped bed forms, by providing labile DOC (sodium benzoate) and nitrate. Homogeneously distributed biofilm was obtained by the same feeding strategy but with mixing the sediments manually on a daily basis. After the biofilm growth period, transformation of the labile DOC under different overlying velocities and losing or gaining fluxes was studied after spiking with sodium benzoate and by monitoring the decrease in DOC concentration in the bulk water over time using an online UV/Vis spectrophotometer. In addition, oxygen profiles across the water-streambed interface were measured at different locations along the bed form using oxygen microelectrodes. Preliminary results showed that the rate of labile DOC degradation increased exponentially with increasing overlying water velocity, regardless of the type of biofilm. Gaining and losing conditions did not play a critical role in the DOC degradation regardless of the type of biofilm, because the labile DOC was quickly utilized close to the surface. Under losing conditions, complete depletion of oxygen was observed within the top 5 millimeters, regardless of the biofilm type. In contrast, oxygen profiles under gaining condition showed an incomplete consumption of oxygen followed by an increase in the concentration of oxygen deeper in the sediments due to the upward flow of oxygenated groundwater. The results suggest that the transformation

  14. Permanganate oxidizable carbon reflects a processed soil fraction that is sensitive to management

    USDA-ARS?s Scientific Manuscript database

    Permanganate oxidizable C (POXC; i.e., active C) is a relatively new method that can quantify labile soil C rapidly and inexpensively. Despite limited reports of positive correlations with particulate organic carbon (POC), microbial biomass carbon (MBC) and other soil carbon (C) fractions, little i...

  15. The five-factor model of impulsivity-like traits and emotional lability in aggressive behavior.

    PubMed

    Dvorak, Robert D; Pearson, Matthew R; Kuvaas, Nicholas J

    2013-01-01

    Factors that increase automatic psychological processes may result in impulsive action and, consequently, aggressive behavior. The current cross-sectional study examined the association between the five-factor model of impulsivity-like traits (negative urgency, positive urgency, premeditation, perseverance, and sensation seeking), emotional lability, and physically aggressive behaviors among college students (n = 481) in a negative binomial hurdle model. In the logistic portion of the model, emotional lability was related to a higher likelihood of engaging in aggressive acts in the past 6 months. The association between emotional lability and the likelihood of aggressive behavior was moderated by two impulsivity-like traits: negative urgency and positive urgency. Specifically, emotional lability was related to engaging in aggressive acts among those with high negative urgency, and among those with low positive urgency. In the count portion of the model, emotional lability was uniquely related to the number of aggressive acts in the past 6 months. Our results indicate that emotional lability and facets of impulsivity interactively relate to engagement in aggressive behavior, suggesting that these variables be integrated into models of aggression. © 2013 Wiley Periodicals, Inc.

  16. Quantification of soil fauna metabolites and dead mass as humification sources in forest soils

    NASA Astrophysics Data System (ADS)

    Chertov, O. G.

    2016-01-01

    The analysis of publications on soil food webs (FWs) allowed calculation of the contents of soil fauna metabolites and dead mass, which can serve as materials for humification. Excreta production of FWmicrofauna reaches 570 kg/ha annually, but the liquid excreta of protozoa and nematodes compose about 25%. The soil fauna dead mass can be also maximally about 580 kg/ha per year. However, up to 70% of this material is a dead mass of bacteria, protozoa, and nematodes. The undecomposed forest floor (L) has low values of these metabolites in comparison with the raw humus organic layer (F + H). The mass of these metabolites is twice lower in Ah. Theoretical assessment of earthworms' role in SOM formation shows that the SOM amount in fresh coprolites can be 1.4 to 4.5-fold higher than SOM in the bulk soil in dependence on food assimilation efficiency, the soil: litter ratio in the earthworms' ration, and SOM quantity in the bulk soil. Excreta production varies from 0.2 to 1.9% of the total SOM pool annually, including 0.15-1.5% of excrements of arthropods and enchytraeidae, but the amount of arthropods' dead mass comprises 0.2-0.4%. The calculated values of the SOM increase due to earthworms' coprolites are of the same order (0.9-2.7% of SOM pool annually). These values of SOM-forming biota metabolites and dead mass are close to the experimental and simulated data on labile and stable SOM fractions decomposition in forest soils (about 2% annually). Therefore, these biota's products can play a role to restock SOM decrease due to mineralization.

  17. Fluorescence characterization of fractionated dissolved organic matter in the five tributaries of Poyang Lake, China.

    PubMed

    Yan, Caixia; Liu, Huihui; Sheng, Yanru; Huang, Xian; Nie, Minghua; Huang, Qi; Baalousha, Mohammed

    2018-10-01

    Characterization of natural colloids is the key to understand pollutant fate and transport in the environment. The present study investigates the relationship between size and fluorescence properties of colloidal organic matter (COM) from five tributaries of Poyang Lake. Colloids were size-fractionated using cross-flow ultrafiltration and their fluorescence properties were measured by three-dimensional excitation-emission matrix fluorescence spectroscopy (3D-EEM). Parallel factor analysis (PARAFAC) and/or Self-organizing map (SOM) were applied to assess fluorescence properties as proxy indicators for the different size of colloids. PARAFAC analysis identified four fluorescence components including three humic-like components (C1-C3) and a protein-like component (C4). These four fluorescence components, and in particular the protein-like component, are primarily present in <1 kDa phase. For the colloidal fractions (1-10 kDa, 10-100 kDa, and 100 kDa-0.7 μm), the majority of fluorophores are associated with the smallest size fraction. SOM analysis demonstrated that relatively high fluorescence intensity and aromaticity occur primarily in <1 kDa phase, followed by 1-10 kDa colloids. Coupling PARAFAC and SOM facilitate the visualization and interpretation of the relationship between colloidal size and fluorescence properties with fewer input variables, shorter running time, higher reliability, and nondestructive results. Fluorescence indices analysis reveals that the smallest colloidal fraction (1-10 kDa) was dominated by higher humified and less autochthonous COM. Copyright © 2018 Elsevier B.V. All rights reserved.

  18. DENSITY FRACTIONATION OF FOREST SOILS: METHODOLOGICAL QUESTIONS AND INTERPRETATION OF INCUBATION RESULTS AND TURNOVER TIME IN AN ECOSYSTEM CONTEXT

    EPA Science Inventory

    Soil organic matter (SOM) is often separated by physical means to simplify a complex matrix into discrete fractions. A frequent approach to isolating two or more fractions is based on differing particle densities and uses a high density liquid such as sodium polytungstate (SPT). ...

  19. Density fractionation of forest soils: methodological questions and interpretation of incubation results and turnover time in an ecosystem context

    Treesearch

    Susan E. Crow; Christopher W. Swanston; Kate Lajtha; J. Renee Brooks; Heath Keirstead

    2007-01-01

    Soil organic matter (SOM) is often separated by physical means to simplify a complex matrix into discrete fractions. A frequent approach to isolating two or more fractions is based on differing particle densities and uses a high density liquid such as sodium polytungstate (SPT). Soil density fractions are often interpreted as organic matter pools with different carbon...

  20. Distribution of dissolved labile and particulate iron and copper in Terra Nova Bay polynya (Ross Sea, Antarctica) surface waters in relation to nutrients and phytoplankton growth

    NASA Astrophysics Data System (ADS)

    Rivaro, Paola; Ianni, Carmela; Massolo, Serena; Abelmoschi, M. Luisa; De Vittor, Cinzia; Frache, Roberto

    2011-05-01

    The distribution of the dissolved labile and of the particulate Fe and Cu together with dissolved oxygen, nutrients, chlorophyll a and total particulate matter was investigated in the surface waters of Terra Nova Bay polynya in mid-January 2003. The measurements were conducted within the framework of the Italian Climatic Long-term Interactions of the Mass balance in Antarctica (CLIMA) Project activities. The labile dissolved fraction was operationally defined by employing the chelating resin Chelex-100, which retains free and loosely bound trace metal species. The dissolved labile Fe ranges from below the detection limit (0.15 nM) to 3.71 nM, while the dissolved labile Cu from below the detection limit (0.10 nM) to 0.90 nM. The lowest concentrations for both metals were observed at 20 m depth (the shallowest depth for which metals were measured). The concentration of the particulate Fe was about 5 times higher than the dissolved Fe concentration, ranging from 0.56 to 24.83 nM with an average of 6.45 nM. The concentration of the particulate Cu ranged from 0.01 to 0.71 nM with an average of 0.17 nM. The values are in agreement with the previous data collected in the same area. We evaluated the role of the Fe and Cu as biolimiting metals. The N:dissolved labile Fe ratios (18,900-130,666) would or would not allow a complete nitrate removal, on the basis of the N:Fe requirement ratios that we calculated considering the N:P and the C:P ratios estimated for diatoms. This finding partially agrees with the Si:N ratio that we found (2.29). Moreover we considered a possible influence of the dissolved labile Cu on the Fe uptake process.

  1. Metal contamination and fractionation in sediments from the lower basin of the Vale do Ribeira (SE, Brazil).

    PubMed

    Bonnail, Estefanía; Buruaem, Lucas M; Morais, Lucas G; Abessa, Denis M S; Sarmiento, Aguasanta M; DelValls, T Ángel

    2017-06-01

    The sediment quality of Ribeira de Iguape River is affected by former Pb extraction mining. Some studies affirm the restoration status of the basin, however, mobility of metals and its associated risk is still questioned. This study integrates the metal concentrations in the lower part of the basin with different contamination source to determine the existence of risks associated with the mobile fractions of the geochemical matrix. Despite concentrations of metals were low and the environmental risk factor values were negative, our results indicated that As, Mn, Pb, and V were present in the most labile forms. The multivariate analysis conducted using metal concentrations, environmental risk factor values and speciation suggested that any risk would be associated with the labile fractions of the analyzed elements, especially for Pb. The station from Registro was stressed by Co, Pb and Zn; with Pb under the reactive fraction that could be associated with high mobility and potential bioavailability.

  2. Soil Organic Matter Stability and Soil Carbon Storage with Changes in Land Use Intensity in Uganda

    NASA Astrophysics Data System (ADS)

    Tiemann, L. K.; Grandy, S.; Hartter, J.

    2014-12-01

    As the foundation of soil fertility, soil organic matter (SOM) formation and break-down is a critical factor of agroecosystem sustainability. In tropical systems where soils are quickly weathered, the link between SOM and soil fertility is particularly strong; however, the mechanisms controlling the stabilization and destabilization of SOM are not well characterized in tropical soils. In western Uganda, we collected soil samples under different levels of land use intensity including maize fields, banana plantations and inside an un-cultivated native tropical forest, Kibale National Park (KNP). To better understand the link between land use intensity and SOM stability we measured total soil C and N, and respiration rates during a 369 d soil incubation. In addition, we separated soils into particle size fractions, and mineral adsorbed SOM in the silt (2-50 μm ) and clay (< 2 μm) fractions was dissociated, purified and chemically characterized via pyrolysis-GC/MS. Cultivated soil C and N have declined by 22 and 48%, respectively, in comparison to uncultivated KNP soils. Incubation data indicate that over the last decade, relatively accessible and labile soil organic carbon (SOC) pools have been depleted by 55-59% in cultivated soils. As a result of this depletion, the chemical composition of SOM has been altered such that clay and silt associated SOM differed significantly between agricultural fields and KNP. In particular, nitrogen containing compounds were in lower abundance in agricultural compared to KNP soils. This suggests that N depletion due to agriculture has advanced to pools of mineral associated organic N that are typically protected from break-down. In areas where land use intensity is relatively greater, increases in polysaccharides and lipids in maize fields compared to KNP indicate increases in microbial residues and decomposition by-products as microbes mine SOM for organic N. Chemical characterization of post-incubation SOM will help us better

  3. Affect lability predicts occurrence of suicidal ideation in bipolar patients: a two-year prospective study.

    PubMed

    Ducasse, D; Jaussent, I; Guillaume, S; Azorin, J M; Bellivier, F; Belzeaux, R; Bougerol, T; Etain, B; Gard, S; Henry, C; Kahn, J P; Leboyer, M; Loftus, J; Passerieux, C; Olié, E; Courtet, P

    2017-05-01

    The aim of our study was to investigate, in bipolar patients, whether affect lability was associated with suicidal ideation incidence during 2-year follow-up, and which subtype of affect lability was associated with suicidal ideation. A total of 319 euthymic or mildly depressed bipolar outpatients recruited in the French FondaMental Advanced Centres of Expertise for Bipolar Disorder were divided into two subgroups according to the occurrence of suicidal ideation during a 2-year follow-up. Affect lability was assessed by the French version of the Affect Lability Scale. Bipolar patients with high affect lability were more likely to report suicidal ideation during follow-up, even after adjustment for age, study level, rapid cycling, current depression level, anxiety disorder, and lifetime history SA (OR = 2.47; 95% CI [1.15-5.30], P = 0.01). The risk of suicidal ideation increased with the level of affect lability. More specifically, the propensity to switch from neutral to elation affect, from anxious to depressive affect (or inversely), and from neutral to anger affect predicted suicidal ideation. Reducing affective lability could become a new therapeutic target of suicidal prevention in bipolar disorder. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  4. Lability of High Molecular Weight Dissolved Organic Matter Polysaccharides Increases with Mild Acid or Base Treatment.

    NASA Astrophysics Data System (ADS)

    Pedler Sherwood, B.; Sosa, O.; Nelson, C. E.; Repeta, D.; DeLong, E.

    2016-02-01

    Approximately 662 Pg of dissolved organic carbon (DOC) has accumulated in the global ocean, yet the biological and chemical constraints on DOC turnover remain poorly understood. High molecular weight dissolved organic matter (HMWDOM) is largely comprised of semi-labile polysaccharides. These polysaccharides resist degradation even in the presence of nutrient amendments, suggesting unknown factors of polysaccharide composition affect microbial degradation. In a series of microcosm incubations conducted at station ALOHA in the North Pacific Subtropical Gyre, we tested the affect of mild base (KOH-DOM) and acid (HCl-DOM) treatments on polysaccharide lability. KOH-DOM, HCl-DOM, and untreated HMWDOM was added to seawater from the deep chlorophyll maximum and 200m. Microcosms amended with KOH-DOM and HCl-DOM yielded higher bacterial abundance and greater carbon drawdown relative to untreated HMWDOM and unamended controls. Microcosms amended with KOH-DOM and HCl-DOM also showed significant production of fluorescent DOM (fDOM), whereas untreated HMWDOM and unamended controls showed a net decrease in fDOM as measured by parallel factor analysis of DOM excitation-emission spectra. Metagenomic analyses revealed that microcosms amended with untreated HMWDOM and controls became dominated by Alteromonas genera ( 60% total sequence reads). In contrast, KOH-DOM and HCl-DOM amended microcosms yielded greater bacterial diversity; Alteromonas genera comprised 25% of sequence reads, with differences primarily accounted for by proportional increases in vibrio, roseobacter, rugeria and marinomonas clades. Transcriptomic analyses identified differential gene expression during growth on each DOM fraction. This study provides new insight into specific chemical moieties that may limit the bacterial degradation rate of semi-labile HMWDOM in the ocean.

  5. Non-labile Soil 15Nitrogen Retention beneath Three Tree Species in a Tropical Plantation

    Treesearch

    Jason P. Kaye; Dan Binkley; Xiaoming Zou

    2002-01-01

    Soil organic matter is the largest sink for N additions to forests.Species composition may affect soilNretention by altering the amount or proportion of added N stored in non-labile organic pools. We measured 15N tracer retention in labile and non-labile pools of surface (0–20 cm) mineral soils, 7 yr after the tracer was applied to a 9 yr-old Puerto Rican tree...

  6. soil organic matter fractionation

    NASA Astrophysics Data System (ADS)

    Osat, Maryam; Heidari, Ahmad

    2010-05-01

    Carbon is essential for plant growth, due to its effects on other soil properties like aggregation. Knowledge of dynamics of organic matter in different locations in the soil matrix can provide valuable information which affects carbon sequestration and soil the other soil properties. Extraction of soil organic matter (SOM) fractions has been a long standing approach to elucidating the roles of soil organic matter in soil processes. Several kind fractionation methods are used and all provide information on soil organic matter function. Physical fractionation capture the effects on SOM dynamics of the spatial arrangement of primary and secondary organomineral particles in soil while chemical fractionation can not consider the spatial arrangement but their organic fractions are suitable for advanced chemical characterization. Three method of physical separation of soil have been used, sieving, sedimentation and densitometry. The distribution of organic matter within physical fractions of the soil can be assessed by sieving. Sieving separates soil particles based strictly on size. The study area is located on north central Iran, between 35° 41'- 36° 01' N and 50° 42'- 51° 14' E. Mean annual precipitation about 243.8 mm and mean annual air temperature is about 14.95 °C. The soil moisture and temperature regime vary between aridic-thermic in lower altitudes to xeric-mesic in upper altitudes. More than 36 surface soil samples (0-20 cm) were collected according to land-use map units. After preliminary analyzing of samples 10 samples were selected for further analyses in five size fractions and three different time intervals in September, January and April 2008. Fractionation carried out by dry sieving in five classes, 1-2 mm, 0.5-1 mm, 270 μm-0.5mm, 53-270 μm and <53 μm. Organic matter and C/N ratio were determined for all fractions at different time intervals. Chemical fractionation of organic matter also carried out according to Tan (2003), also Mineralogical

  7. Radiation-induced heat-labile sites that convert into DNA double-strand breaks

    NASA Technical Reports Server (NTRS)

    Rydberg, B.; Chatterjee, A. (Principal Investigator)

    2000-01-01

    The yield of DNA double-strand breaks (DSBs) in SV40 DNA irradiated in aqueous solution was found to increase by more than a factor of two as a result of postirradiation incubation of the DNA at 50 degrees C and pH 8.0 for 24 h. This is in agreement with data from studies performed at 37 degrees C that were published previously. Importantly, similar results were also obtained from irradiation of mammalian DNA in agarose plugs. These results suggest that heat-labile sites within locally multiply damaged sites are produced by radiation and are subsequently transformed into DSBs. Since incubation at 50 degrees C is typically employed for lysis of cells in commonly used pulsed-field gel assays for detection of DSBs in mammalian cells, the possibility that heat-labile sites are present in irradiated cells was also studied. An increase in the apparent number of DSBs as a function of lysis time at 50 degrees C was found with kinetics that was similar to that for irradiated DNA, although the magnitude of the increase was smaller. This suggests that heat-labile sites are also formed in the cell. If this is the case, a proportion of DSBs measured by the pulsed-field gel assays may occur during the lysis step and may not be present in the cell as breaks but as heat-labile sites. It is suggested that such sites consist mainly of heat-labile sugar lesions within locally multiply damaged sites. Comparing rejoining of DSBs measured with short and long lysis procedure indicates that the heat-labile sites are repaired with fast kinetics in comparison with repair of the bulk of DSBs.

  8. In Situ, High-Resolution Profiles of Labile Metals in Sediments of Lake Taihu

    PubMed Central

    Wang, Dan; Gong, Mengdan; Li, Yangyang; Xu, Lv; Wang, Yan; Jing, Rui; Ding, Shiming; Zhang, Chaosheng

    2016-01-01

    Characterizing labile metal distribution and biogeochemical behavior in sediments is crucial for understanding their contamination characteristics in lakes, for which in situ, high-resolution data is scare. The diffusive gradient in thin films (DGT) technique was used in-situ at five sites across Lake Taihu in the Yangtze River delta in China to characterize the distribution and mobility of eight labile metals (Fe, Mn, Zn, Ni, Cu, Pb, Co and Cd) in sediments at a 3 mm spatial resolution. The results showed a great spatial heterogeneity in the distributions of redox-sensitive labile Fe, Mn and Co in sediments, while other metals had much less marked structure, except for downward decreases of labile Pb, Ni, Zn and Cu in the surface sediment layers. Similar distributions were found between labile Mn and Co and among labile Ni, Cu and Zn, reflecting a close link between their geochemical behaviors. The relative mobility, defined as the ratio of metals accumulated by DGT to the total contents in a volume of sediments with a thickness of 10 mm close to the surface of DGT probe, was the greatest for Mn and Cd, followed by Zn, Ni, Cu and Co, while Pb and Fe had the lowest mobility; this order generally agreed with that defined by the modified BCR approach. Further analyses showed that the downward increases of pH values in surface sediment layer may decrease the lability of Pb, Ni, Zn and Cu as detected by DGT, while the remobilization of redox-insensitive metals in deep sediment layer may relate to Mn cycling through sulphide coprecipitation, reflected by several corresponding minima between these metals and Mn. These in situ data provided the possibility for a deep insight into the mechanisms involved in the remobilization of metals in freshwater sediments. PMID:27608033

  9. Phaeochromocytoma presenting with labile blood pressures following coronary artery bypass grafting.

    PubMed

    Roy, James; Akhunji, Zakir; Kushwaha, Virag; Mackie, James; Jepson, Nigel

    2016-12-01

    Pheochromocytomas have been reported prior to and during coronary artery bypass surgery. We present a patient with an undiagnosed pheochromocytoma who presented with labile hypertension following coronary artery bypass surgery. This case calls attention to the inclusion of an undiagnosed pheochromocytoma in the differential diagnosis for all patients who develop labile hypertension in the postoperative period following cardiac surgery. © 2016 Wiley Periodicals, Inc.

  10. Mechanism of Stabilization of Labile Compounds by Silk Fibroin Proteins

    DTIC Science & Technology

    2017-04-05

    AFRL-AFOSR-VA-TR-2017-0076 Mechanism of Stabilization of Labile Compounds by Silk Fibroin Proteins David Kaplan TRUSTEES OF TUFTS COLEGE INC 169... Proteins 5a.  CONTRACT NUMBER 5b.  GRANT NUMBER FA9550-14-1-0015 5c.  PROGRAM ELEMENT NUMBER 61102F 6. AUTHOR(S) David Kaplan 5d.  PROJECT NUMBER 5e...objective of this research was to elucidate the fundamental mechanisms by which labile compounds are entrapped and stabilized by silk fibroin protein . The

  11. Interactive effects of C, organic N, and inorganic N on SOM mineralization

    NASA Astrophysics Data System (ADS)

    Mason-Jones, Kyle; Schmücker, Niklas; Kuzyakov, Yakov

    2017-04-01

    The processes governing soil organic matter (SOM) mineralization are not yet fully understood, despite considerable interest in the topic. Mechanistic theories of microbial activity often point to interactions between carbon (C) pools and other nutrients, notably nitrogen (N). The N-mining hypothesis is a well-known example, which claims that N-limited microorganisms mineralize SOM to access the N contained within. This could elegantly explain why an increase in available carbon often accelerates mineralization of SOM, i.e. the priming effect. The hypothesis predicts a robust positive relationship between priming and C:N ratio of the added organic substances, and we therefore tested this expectation. Soil samples from an agricultural Luvisol were incubated in a three-week, full factorial experiment, amended with organic carbon sources (glucose, alanine and no addition), at three levels of C addition (none, 25% and 50% of extractable MBC), and three levels of inorganic N to match the organic N provided by alanine. Isotopic labelling (14C and 15N) was used to trace added C and N in the evolved CO2, soil solution and microbial biomass. Both glucose and alanine induced accelerated SOM mineralization. Alanine's low C:N ratio did not prevent it from causing priming, and inorganic N forms had little effect on SOM mineralization. Our results were therefore inconsistent with the predictions of the N-mining hypothesis. Instead, the dynamics of the observed priming indicated that other mechanisms were more important, closely related to the mineralization of the added substances. Co-metabolism of SOM and apparent priming by pool substitution were more consistent the observed priming effects. These new experimental results are supported by an analysis of literature. We demonstrate that the simple C:N stoichiometric theory of N mining is insufficient to explain the role of N in SOM mineralization. Other mechanisms must be included in explanations of SOM priming.

  12. Transformations in soil organic matter and aggregate stability after conversion of Mediterranean forest to agriculture

    NASA Astrophysics Data System (ADS)

    Recio Vázquez, Lorena; Almendros, Gonzalo; Carral, Pilar; Knicker, Heike; González Pérez, José Antonio; González Vila, Francisco Javier

    2013-04-01

    Conversion of forest ecosystems into croplands often leads to severe decrease of the soil organic matter (SOM) levels with the concomitant deterioration of soil structure. The present research focuses on the effects of cultivation on the stability of soil macroaggregates, as well as on the total quantity and quality of SOM. Three representative soils from central Spain (i.e., Petric Calcisol, Cutanic Luvisol and Calcic Vertisol) were sampled. Each site had natural vegetation (NV) dominated either by characteristic Mediterranean forest (dehesa) or cereal crops (CC) under conventional tillage. For each site, three spatial replicates of the NV and CC were sampled. Soil aggregate stability was measured by the wet sieving method. The structural stability index was then calculated as the mass of aggregated soil (>250 μm) remaining after wet sieving, as a percent of total aggregate weight. The analytical characterization of the SOM was carried out after chemical fractionation for quantifying the different organic pools: free organic matter (FOM), humic acids (HA), fulvic acids (FA) and humin (H). Furthermore, whole soil samples pretreated with 10 % HF solution were analyzed by CP-MAS 13C NMR and the purified HA fraction was characterized by elementary analysis, visible and infrared spectroscopies and Py-GC/MS. A marked reduction in the proportion of stable aggregates when the natural ecosystem was converted to agriculture was observed. Values of the structural stability index (%) changed over from 96.2 to 38.1, 95.1 to 83.7 and 98.5 to 60.6 for the Calcisol, Luvisol and Vertisol respectively. Comparatively higher contents of SOM were found in the soils under NV (11.69 to 0.93, 3.29 to 2.72 and 9.51 to 0.79 g C100 g-1soil) even though a quantitative rearrangement of the SOM pools was noticed. In all sites, the relative contribution of the labile C (FOM) to the total SOM content decreased when the forest soils were converted into croplands, whereas the proportion of both

  13. How to Compute Labile Metal-Ligand Equilibria

    ERIC Educational Resources Information Center

    de Levie, Robert

    2007-01-01

    The different methods used for computing labile metal-ligand complexes, which are suitable for an iterative computer solution, are illustrated. The ligand function has allowed students to relegate otherwise tedious iterations to a computer, while retaining complete control over what is calculated.

  14. Characterization of labile organic carbon in coastal wetland soils of the Mississippi River deltaic plain: relationships to carbon functionalities.

    PubMed

    Dodla, Syam K; Wang, Jim J; Delaune, Ronald D

    2012-10-01

    Adequate characterization of labile organic carbon (LOC) is essential to the understanding of C cycling in soil. There has been very little evaluation about the nature of LOC characterizations in coastal wetlands, where soils are constantly influenced by different redox fluctuations and salt water intrusions. In this study, we characterized and compared LOC fractions in coastal wetland soils of the Mississippi River deltaic plain using four different methods including 1) aerobically mineralizable C (AMC), 2) cold water extractable C (CWEC), 3) hot water extractable C (HWEC), and 4) salt extractable C (SEC), as well as acid hydrolysable C (AHC) which includes both labile and slowly degradable organic C. Molecular organic C functional groups of these wetland soils were characterized by (13)C solid-state nuclear magnetic resonance (NMR). The LOC and AHC increased with soil organic C (SOC) regardless of wetland soil type. The LOC estimates by four different methods were positively and significantly linearly related to each other (R(2)=0.62-0.84) and with AHC (R(2)=0.47-0.71). The various LOC fractions accounted for ≤4.3% of SOC whereas AHC fraction represented 16-49% of SOC. AMC was influenced positively by O/N-alkyl and carboxyl C but negatively by alkyl C, whereas CWEC and SEC fractions were influenced only positively by carboxyl C but negatively by alkyl C in SOC. On the other hand, HWEC fraction was found to be only influenced positively by carbonyl C, and AHC positively by O/N-alkyl and alkyl C but negatively by aromatic C groups in SOC. Overall these relations suggested different contributions of various molecular organic C moieties to LOC in these wetlands from those often found for upland soils. The presence of more than 50% non-acid hydrolysable C suggested the dominance of relatively stable SOC pool that would be sequestered in these Mississippi River deltaic plain coastal wetland soils. The results have important implications to the understanding of the

  15. Role of structure, accessibility and microporosity on sorption of phenanthrene and nonylphenol by sediments and their fractions.

    PubMed

    Zhang, Dainan; Duan, Dandan; Huang, Youda; Xiong, Yongqiang; Yang, Yu; Ran, Yong

    2016-12-01

    To better understand interaction mechanism of sediment organic matter with hydrophobic organic compounds, sorption of phenanthrene (Phen) and nonylphenol (NP) by bulk sediments and their fractions was investigated. Three surface sediments were selectively fractionated into different organic fractions, including the demineralized carbon (DM), lipid free carbon (LF), lipid (LP), and nonhydrolyzable carbon (NHC) fractions. The structure and microporosity of the isolated fractions were characterized by NMR and CO 2 adsorption techniques, and used as sorbents for Phen and NP. The calculated micropore volumes (V o ) and specific surface area (SSA) values are positively related to the concentrations of aromatic C and char for the DM, LF and NHC fractions, suggesting that aromatic moieties and char component significantly contribute to the microporosity. The LF fractions exhibit greater sorption affinity than the DM fractions do, indicating that the presence of LP could block the accessibility of sorption sites for Phen and NP. Significant and positive correlations among log K' FOC values for Phen and NP and aromatic carbon and char contents, and V o and SSA values suggest the aromatic moieties and microporosity dominate their sorption of HOCs by sediment organic matter (SOM). As the NHC fractions have much stronger sorption than other fractions do, they dominate the overall sorption by the bulk samples. This study indicated that the important roles of aromatic moieties, accessibility, and microporosity in the sorption of HOCs by SOM. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. The temperature sensitivity of soil organic carbon decomposition is not related to labile and recalcitrant carbon.

    PubMed

    Tang, Jie; Cheng, Hao; Fang, Changming

    2017-01-01

    The response of resistant soil organic matter to temperature change is crucial for predicting climate change impacts on C cycling in terrestrial ecosystems. However, the response of the decomposition of different soil organic carbon (SOC) fractions to temperature is still under debate. To investigate whether the labile and resistant SOC components have different temperature sensitivities, soil samples were collected from three forest and two grass land sites, along with a gradient of latitude from 18°40'to 43°17'N and elevation from 600 to 3510 m across China, and were incubated under changing temperature (from 12 to 32 oC) for at least 260 days. Soil respiration rates were positively related to the content of soil organic carbon and soil microbial carbon. The temperature sensitivity of soil respiration, presented as Q10 value, varies from 1.93 ± 0.15 to 2.60 ± 0.21. During the incubation, there were no significant differences between the Q10 values of soil samples from different layers of the same site, nor a clear pattern of Q10 values along with the gradient of latitude. The result of this study does not support current opinion that resistant soil carbon decomposition is more sensitive to temperature change than labile soil carbon.

  17. Vegetation effects on soil organic matter chemistry of aggregate fractions in a Hawaiian forest

    USDA-ARS?s Scientific Manuscript database

    We examined chemical changes from live plant tissue to soil organic matter (SOM) to determine the persistence of individual plant compounds into soil aggregate fractions. We characterized the tissue chemistry of a slow- (Dicranopteris linearis) and fast-decomposing species (Cheirodendron trigynum) a...

  18. Effect of exogenous phosphate on the lability and phytoavailability of arsenic in soils.

    PubMed

    Wang, Jinjin; Zeng, Xibai; Zhang, Hao; Li, Yongtao; Zhao, Shizhen; Su, Shiming; Bai, Lingyu; Wang, Yanan; Zhang, Tuo

    2018-04-01

    The effect of exogenous phosphate (P, 200 mg⋅kg -1 soil) on the lability and phytoavailability of arsenic (As) was studied using the diffusive gradients in thin films (DGT) technique. Lettuce were grown on the As-amended soils following the stabilization of soil labile As after 90 days incubation. Phosphate (P) application generally facilitated plant growth except one grown on P-sufficient soil. Soil labile As concentration increased in all the soils after P application due to a competition effect. Plant As concentration increased in red soils collected from Hunan Province, while decreases were observed in the other soils. Even though, an overall trend of decrease was obtained in As phytoavailability along with the increase of DGT-measured soil labile P/As molar ratio. The functional equation between P/As and As phytoavailability provided a critical value of 1.7, which could be used as a guidance for rational P fertilization, thus avoiding overfertilization. Copyright © 2018 Elsevier Ltd. All rights reserved.

  19. Cloud fraction at the ARM SGP site: Reducing uncertainty with self-organizing maps

    DOE PAGES

    Kennedy, Aaron D.; Dong, Xiquan; Xi, Baike

    2015-02-15

    Instrument downtime leads to uncertainty in the monthly and annual record of cloud fraction (CF), making it difficult to perform time series analyses of cloud properties and perform detailed evaluations of model simulations. As cloud occurrence is partially controlled by the large-scale atmospheric environment, this knowledge is used to reduce uncertainties in the instrument record. Synoptic patterns diagnosed from the North American Regional Reanalysis (NARR) during the period 1997–2010 are classified using a competitive neural network known as the self-organizing map (SOM). The classified synoptic states are then compared to the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) instrumentmore » record to determine the expected CF. A number of SOMs are tested to understand how the number of classes and the period of classifications impact the relationship between classified states and CFs. Bootstrapping is utilized to quantify the uncertainty of the instrument record when statistical information from the SOM is included. Although all SOMs significantly reduce the uncertainty of the CF record calculated in Kennedy et al. (Theor Appl Climatol 115:91–105, 2014), SOMs with a large number of classes and separated by month are required to produce the lowest uncertainty and best agreement with the annual cycle of CF. Lastly, this result may be due to a manifestation of seasonally dependent biases in NARR.« less

  20. Cloud fraction at the ARM SGP site: reducing uncertainty with self-organizing maps

    NASA Astrophysics Data System (ADS)

    Kennedy, Aaron D.; Dong, Xiquan; Xi, Baike

    2016-04-01

    Instrument downtime leads to uncertainty in the monthly and annual record of cloud fraction (CF), making it difficult to perform time series analyses of cloud properties and perform detailed evaluations of model simulations. As cloud occurrence is partially controlled by the large-scale atmospheric environment, this knowledge is used to reduce uncertainties in the instrument record. Synoptic patterns diagnosed from the North American Regional Reanalysis (NARR) during the period 1997-2010 are classified using a competitive neural network known as the self-organizing map (SOM). The classified synoptic states are then compared to the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) instrument record to determine the expected CF. A number of SOMs are tested to understand how the number of classes and the period of classifications impact the relationship between classified states and CFs. Bootstrapping is utilized to quantify the uncertainty of the instrument record when statistical information from the SOM is included. Although all SOMs significantly reduce the uncertainty of the CF record calculated in Kennedy et al. (Theor Appl Climatol 115:91-105, 2014), SOMs with a large number of classes and separated by month are required to produce the lowest uncertainty and best agreement with the annual cycle of CF. This result may be due to a manifestation of seasonally dependent biases in NARR. With use of the SOMs, the average uncertainty in monthly CF is reduced in half from the values calculated in Kennedy et al. (Theor Appl Climatol 115:91-105, 2014).

  1. Alterations caused to soil organic matter by post-fire rehabilitation actions in a pine forest from doñana national park (southwest Spain)

    NASA Astrophysics Data System (ADS)

    González-Pérez, José A.; Jiménez-Morillo, Nicasio T.; Jordán, Antonio; Zavala, Lorena M.; Granged, Arturo J. P.; González-Vila, Francisco J.

    2016-04-01

    (Jiménez-Morillo et al., 2014). The BR soil coarse fraction showed the highest proportion of methoxyphenols whereas that from the UB soil showed the highest value for alkyl compounds. With respect to the fine soil fractions, although SOM composition varied largely from one area to another, it was found generally more altered than in the coarse fractions. SOM from the UB fine fraction shows a high proportion of alkyl compounds and comparatively lower amount of carbohydrate- and lignin-derived ones. The B soil fine fraction did not show a high contribution from alkyl compounds, which may indicate the occurrence of thermal cracking of alkane/alkene linear chains during the forest fire (González-Pérez et al., 2008). The SOM from the BR soil fine fraction was found of a more labile nature (high relative proportions of fatty acids, peptide- and carbohydrate-derived compounds) than that in the UB and B soils. This contribution from labile compounds may be explained by topsoil mixing caused by the post-fire rehab actions i.e. soil tilling/ploughing and burn tree logging and removal. References: González-Pérez JA, González-Vila FJ, González-Vázquez R, Arias ME, Rodríguez J, Knicker H, 2008. Use of multiple biogeochemical parameters to monitor the recovery of soils after forest fires. Organic Geochemistry 39, 940-944. DOI: 10.1016/j.orggeochem.2008.03.014. Jiménez-Morillo NT, González-Pérez JA, Jordán A, Zavala LM, de la Rosa JM, Jiménez-González MA, González-Vila FJ. 2014. Organic matter fractions controlling soil water repellency in sandy soils from the Doñana National Park (Southwestern Spain). Land Degradation & Development. DOI: 10.1002/ldr.2314. Acknowledgements: This study is part of the results of the GEOFIRE and POSTFIRE Projects (CGL2012-38655-C04-01 and CGL2013-47862-C2-1-R respectively) funded by the Spanish Ministry for Economy and Competitiveness. N.T Jiménez-Morillo is funded by a FPI research grant (BES-2013-062573).

  2. Diffusive gradients in thin films measurement of sulfur stable isotope variations in labile soil sulfate.

    PubMed

    Hanousek, Ondrej; Santner, Jakob; Mason, Sean; Berger, Torsten W; Wenzel, Walter W; Prohaska, Thomas

    2016-11-01

    A diffusive gradient in thin films (DGT) technique, based on a strongly basic anion exchange resin (Amberlite IRA-400), was successfully tested for 34 S/ 32 S analysis in labile soil sulfate. Separation of matrix elements (Na, K, and Ca) that potentially cause non-spectral interferences in 34 S/ 32 S analysis by MC ICP-MS (multi-collector inductively coupled plasma-mass spectrometry) during sampling of sulfate was demonstrated. No isotopic fractionation caused by diffusion or elution of sulfate was observed below a resin gel disc loading of ≤79 μg S. Above this threshold, fractionation towards 34 S was observed. The method was applied to 11 different topsoils and one mineral soil profile (0-100 cm depth) and compared with soil sulfate extraction by water. The S amount and isotopic ratio in DGT-S and water-extractable sulfate correlated significantly (r 2  = 0.89 and r 2  = 0.74 for the 11 topsoils, respectively). The systematically lower 34 S/ 32 S isotope ratios of the DGT-S were ascribed to mineralization of organic S.

  3. Changes in Labile Organic Carbon Fractions and Soil Enzyme Activities after Marshland Reclamation and Restoration in the Sanjiang Plain in Northeast China

    NASA Astrophysics Data System (ADS)

    Song, Yanyu; Song, Changchun; Yang, Guisheng; Miao, Yuqing; Wang, Jiaoyue; Guo, Yuedong

    2012-09-01

    The extensive reclamation of marshland into cropland has tremendously impacted the ecological environment of the Sanjiang Plain in northeast China. To understand the impacts of marshland reclamation and restoration on soil properties, we investigated the labile organic carbon fractions and the soil enzyme activities in an undisturbed marshland, a cultivated marshland and three marshlands that had been restored for 3, 6 and 12 years. Soil samples collected from the different management systems at a depth of 0-20 cm in July 2009 were analyzed for soil organic carbon (SOC), dissolved organic carbon (DOC), microbial biomass carbon (MBC) and easily degradable organic carbon. In addition, the activities of the invertase, β-glucosidase, urease and acid phosphatase were determined. These enzymes are involved in C, N and P cycling, respectively. Long-term cultivation resulted in decreased SOC, DOC, MBC, microbial quotient and C (invertase, β-glucosidase) and N-transforming (urease) enzyme activities compared with undisturbed marshland. After marshland restoration, the MBC and DOC concentrations and the soil invertase, β-glucosidase and urease activities increased. Soil DOC and MBC concentrations are probably the main factors responsible for the different invertase, β-glucosidase and urease activities. In addition, marshland restoration caused a significant increase in the microbial quotient, which reflects enhanced efficiency of organic substrate use by microbial biomass. Our observations demonstrated that soil quality recovered following marshland restoration. DOC, MBC and invertase, β-glucosidase and urease activities were sensitive for discriminating soil ecosystems under the different types of land use. Thus, these parameters should be considered to be indicators for detecting changes in soil quality and environmental impacts in marshlands.

  4. Fermi field and Dirac oscillator in a Som-Raychaudhuri space-time

    NASA Astrophysics Data System (ADS)

    de Montigny, Marc; Zare, Soroush; Hassanabadi, Hassan

    2018-05-01

    We investigate the relativistic dynamics of a Dirac field in the Som-Raychaudhuri space-time, which is described by a Gödel-type metric and a stationary cylindrical symmetric solution of Einstein field equations for a charged dust distribution in rigid rotation. In order to analyze the effect of various physical parameters of this space-time, we solve the Dirac equation in the Som-Raychaudhuri space-time and obtain the energy levels and eigenfunctions of the Dirac operator by using the Nikiforov-Uvarov method. We also examine the behaviour of the Dirac oscillator in the Som-Raychaudhuri space-time, in particular, the effect of its frequency and the vorticity parameter.

  5. SOM Classification of Martian TES Data

    NASA Technical Reports Server (NTRS)

    Hogan, R. C.; Roush, T. L.

    2002-01-01

    A classification scheme based on unsupervised self-organizing maps (SOM) is described. Results from its application to the ASU mineral spectral database are presented. Applications to the Martian Thermal Emission Spectrometer data are discussed. Additional information is contained in the original extended abstract.

  6. Childhood Maltreatment, Emotional Lability, and Alcohol Problems in Young Adults At-Risk for ADHD: Testing Moderation and Moderated Moderation.

    PubMed

    Bunford, Nóra; Wymbs, Brian T; Dawson, Anne E; Shorey, Ryan C

    2017-01-01

    Childhood maltreatment and alcohol problems are common among young adults with attention-deficit hyperactivity disorder (ADHD). However, little is known about the degree to which maltreatment and alcohol problems are associated; potential pertinent mediating or moderating mechanisms, such as emotional lability; and whether this association varies by sex. We examined, in a sample of adults at risk for ADHD (N = 122, 37% male), the association between childhood maltreatment and alcohol problems, whether emotional lability mediated or moderated this association, and whether either role of emotional lability differed between men and women. Emotional lability moderated the association between emotional neglect and alcohol problems; maltreatment increased risk for alcohol problems for those scoring high tovery high on emotional lability, but not for those with very low-moderate levels. The association between emotional abuse and alcohol problems depended both on emotional lability and sex; emotional abuse decreased the risk for alcohol problems among men very low/low on emotional lability, but not for men who were moderate to very high on emotional lability, or for women. These findings have implications for the way in which targeting maltreatment and emotional lability may be incorporated into prevention and intervention programs to prevent alcohol problems among men and women at risk for ADHD.

  7. Land-use intensification impact on phosphorus fractions in highly weathered tropical soils

    NASA Astrophysics Data System (ADS)

    Maranguit, Deejay; Guillaume, Thomas; Kuzyakov, Yakov

    2016-04-01

    Deforestation and land-use intensification in tropics have increased over the past decades, driven by the demand for agricultural products. Despite the fact that phosphorus (P) is one of the main limiting nutrients for agricultural productivity in the tropics, the effect of land-use intensification on P availability remains unclear. The objective was to assess the impacts of land-use intensification on soil inorganic and organic P fractions of different availability (Hedley sequential fractionation) and P stocks in highly weathered tropical soils. We compared the P availability under extensive land-use (rubber agroforest) and intensive land-use with moderate fertilization (rubber monoculture plantations) or high fertilization (oil palm monoculture plantations) in Indonesia. The phosphorus stock was dominated by inorganic forms (60 to 85%) in all land-use types. Fertilizer application increased easily-available inorganic P (i.e., H2O-Pi, NaHCO3-Pi) in intensive rubber and oil palm plantations compared to agroforest. However, the easily-available organic P (NaHCO3-extractable Po) was reduced by half under oil palm and rubber. The decrease of moderately available and non-available P by land-use intensification means that fertilization maintains only short-term soil fertility that is not sustainable in the long run due to the depletion of P reserves. The mechanisms of this P reserve depletion are: soil erosion (here assessed by C/P ratio), mineralization of soil organic matter (SOM) and export of P with yield products. Easily-available P fractions (i.e., H2O-Pi, NaHCO3-Pi and Po) and total organic P were strongly positively correlated with carbon content suggesting that SOM plays a critical role in maintaining P availability. Therefore, the ecologically based management is necessary in mitigating SOM losses to increase the sustainability of agricultural production in P limited highly weathered tropical soils.

  8. A Longitudinal Study of Emotion Regulation, Emotion Lability/Negativity, and Internalizing Symptomatology in Maltreated and Nonmaltreated Children

    PubMed Central

    Kim-Spoon, Jungmeen; Cicchetti, Dante; Rogosch, Fred A.

    2013-01-01

    The longitudinal contributions of emotion regulation and emotion lability/negativity to internalizing symptomatology were examined in a low-income sample (171 maltreated and 151 nonmaltreated children, from age 7 to 10 years). Latent difference score models indicated that, for both maltreated and nonmaltreated children, emotion regulation was a mediator between emotion lability/negativity and internalizing symptomatology, whereas emotion lability/negativity was not a mediator between emotion regulation and internalizing symptomatology. Early maltreatment was associated with high emotion lability/negativity (age 7) that contributed to poor emotion regulation (age 8), which in turn was predictive of increases in internalizing symptomatology (from age 8 to 9). The results imply important roles of emotion regulation in the development of internalizing symptomatology, especially for children with high emotion lability/negativity. PMID:23034132

  9. Chemical characterization of ambient aerosol collected during the southwest monsoon and intermonsoon seasons over the Arabian Sea: Labile-Fe(II) and other trace metals

    NASA Astrophysics Data System (ADS)

    Siefert, Ronald L.; Johansen, Anne M.; Hoffmann, Michael R.

    1999-02-01

    Atmospheric deposition of iron (Fe) to certain regions of the oceans is an important nutrient source of Fe to the biota, and the ability of the biota to uptake Fe is dependent on the speciation of the Fe. Therefore understanding the speciation of Fe in the atmosphere is critical to understanding the role of Fe as a nutrient source in surface ocean waters. Labile ferrous iron (Fe(II)) concentrations as well as total concentrations for Fe and other important trace metals, cations, and anions were determined over the Arabian Sea for two nonconsecutive months during 1995. Ambient aerosol samples were collected during the Indian Ocean intermonsoon and southwest monsoon seasons over the Arabian Sea. Sampling took place aboard the German research vessel Meteor in the months of May (leg M32/3; intermonsoon) and July/August (leg M32/5; southwest monsoon). Both cruise tracks followed the 65th east meridian, traveling for 30 days each (from north to south during leg M32/3 and from south to north during leg M32/5). A high-volume dichotomous virtual impactor with an aerodynamic cutoff size of 3 μm was used to collect the fine and coarse aerosol fractions for metal analysis. A low volume collector was used to collect aerosol samples for anion and cation analysis. The analysis for labile-Fe(II) was done immediately after sample collection to minimize any possible Fe redox reactions which might occur during sample storage. The analytical procedure involved filter extraction in a formate/formic acid buffered solution at pH 4.2 followed by colorimetric quantification of soluble Fe(II). Metals, anions, and cations were analyzed after the cruise. Total atmospheric aqueous-labile-Fe(II) concentrations during the intermonsoon were between 4.75 and <0.4 ng m-3, of which most (>80%) was present in the fine fraction (<3.0 μm). During the southwest monsoon, atmospheric aqueous-labile-Fe(II) concentrations were consistently below the detection limit (<0.34 to <0.089 ng m-3, depending on

  10. The Effect of Treatment with Hydrogen Peroxide and the Mehra-Jackson Reagent on X-ray Diffraction Patterns of Clay Fractions

    NASA Astrophysics Data System (ADS)

    Sokolova, T. A.; Tolpeshta, I. I.; Izosimova, Yu. G.; Umnova, V. A.; Lashukov, P. V.

    2017-12-01

    X-ray diffraction patterns of clay fractions from the AEL and EL horizons of pale-podzolic soil before and after treatment with 10% H2O2 and the Mehra-Jackson reagent in different sequences have been examined. The successive treatment with 10% H2O2 and then with the Mehra-Jackson reagent causes dissolution of Al-hydroxy-interlayers in pedogenic chlorites and the respective increase in the content of labile minerals because of a dramatic decrease in pH upon the treatment with hydrogen peroxide. The rate of these changes depends on the degree of chloritization of pedogenic chlorites in the initial samples. The result of the reverse sequence of the treatments of clay fractions (initially with the Mehra-Jackson reagent and then with hydrogen peroxide) is opposite: the chloritization of labile minerals becomes more intensive. It is provided by pH values that do not drop below 7.5 at any treatment stage. At particular stages, pH values favors the mobilization of Al compounds and their subsequent polymerization in the interlayer space of labile structures. We suppose that hydroxyl-aluminosilicate layers may be formed in the interlayer space upon this treatment sequence.

  11. 'Inconstant males' and the maintenance of labile sex expression in subdioecious plants.

    PubMed

    Ehlers, Bodil K; Bataillon, Thomas

    2007-01-01

    * Here, we evaluate the role of pollen limitation and selfing in the maintenance of labile sex expression in subdioecious plant species. * We used a literature survey to explore which factors correlated with a significant occurrence of hermaphrodites in dioecious species. We developed models to explore the selective maintenance of labile sex expression. The models had similar ecological assumptions but differed in the genetic basis of sex lability. * We found that a significant frequency of hermaphrodites was associated with animal pollination, and that hermaphrodites were 'inconstant' males with perfect flowers, suggesting evolution through the gynodioecious pathway. Models showed that a modifier converting pure males into inconstant males could be maintained under a wide range of reduction in both male and female fitness. Pollen limitation and self-fertilization facilitated invasion of the modifier. Depending on the genetics of sex determination, we found pure dioecy, stable subdioecy (trioecy), and situations where inconstant males coexisted with either pure females or pure males. Under selfing and pollen limitation, certain conditions selected for inconstant males which will drive populations to extinction. * We discuss our results in relation to the evolution towards, and the breakdown of, dioecy, and the ecological and evolutionary implications of labile sex expression.

  12. Submillimeter-scale heterogeneity of labile phosphorus in sediments characterized by diffusive gradients in thin films and spatial analysis.

    PubMed

    Meng, Yuting; Ding, Shiming; Gong, Mengdan; Chen, Musong; Wang, Yan; Fan, Xianfang; Shi, Lei; Zhang, Chaosheng

    2018-03-01

    Sediments have a heterogeneous distribution of labile redox-sensitive elements due to a drastic downward transition from oxic to anoxic condition as a result of organic matter degradation. Characterization of the heterogeneous nature of sediments is vital for understanding of small-scale biogeochemical processes. However, there are limited reports on the related specialized methodology. In this study, the monthly distributions of labile phosphorus (P), a redox-sensitive limiting nutrient, were measured in the eutrophic Lake Taihu by Zr-oxide diffusive gradients in thin films (Zr-oxide DGT) on a two-dimensional (2D) submillimeter level. Geographical information system (GIS) techniques were used to visualize the labile P distribution at such a micro-scale, showing that the DGT-labile P was low in winter and high in summer. Spatial analysis methods, including semivariogram and Moran's I, were used to quantify the spatial variation of DGT-labile P. The distribution of DGT-labile P had clear submillimeter-scale spatial patterns with significant spatial autocorrelation during the whole year and displayed seasonal changes. High values of labile P with strong spatial variation were observed in summer, while low values of labile P with relatively uniform spatial patterns were detected in winter, demonstrating the strong influences of temperature on the mobility and spatial distribution of P in sediment profiles. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Differences in SOM decomposition and temperature sensitivity among soil aggregate size classes in a temperate grasslands.

    PubMed

    Wang, Qing; Wang, Dan; Wen, Xuefa; Yu, Guirui; He, Nianpeng; Wang, Rongfu

    2015-01-01

    The principle of enzyme kinetics suggests that the temperature sensitivity (Q10) of soil organic matter (SOM) decomposition is inversely related to organic carbon (C) quality, i.e., the C quality-temperature (CQT) hypothesis. We tested this hypothesis by performing laboratory incubation experiments with bulk soil, macroaggregates (MA, 250-2000 μm), microaggregates (MI, 53-250 μm), and mineral fractions (MF, <53 μm) collected from an Inner Mongolian temperate grassland. The results showed that temperature and aggregate size significantly affected on SOM decomposition, with notable interactive effects (P<0.0001). For 2 weeks, the decomposition rates of bulk soil and soil aggregates increased with increasing incubation temperature in the following order: MA>MF>bulk soil >MI(P <0.05). The Q10 values were highest for MA, followed (in decreasing order) by bulk soil, MF, and MI. Similarly, the activation energies (Ea) for MA, bulk soil, MF, and MI were 48.47, 33.26, 27.01, and 23.18 KJ mol-1, respectively. The observed significant negative correlations between Q10 and C quality index in bulk soil and soil aggregates (P<0.05) suggested that the CQT hypothesis is applicable to soil aggregates. Cumulative C emission differed significantly among aggregate size classes (P <0.0001), with the largest values occurring in MA (1101 μg g-1), followed by MF (976 μg g-1) and MI (879 μg g-1). These findings suggest that feedback from SOM decomposition in response to changing temperature is closely associated withsoil aggregation and highlights the complex responses of ecosystem C budgets to future warming scenarios.

  14. Chemical leaching methods and measurements of marine labile particulate Fe

    NASA Astrophysics Data System (ADS)

    Revels, B. N.; John, S.

    2012-12-01

    . To explore the first hypothesis, we modeled dissolution of Fe from particles assuming two separate pools, labile and refractory. The model produces a good fit to the data assuming 3mg/g of a labile Fe pool with δ56Fe = -0.9‰ and a refractory Fe pool with δ56Fe = +0.1‰. If the second hypothesis is true, and there is a kinetic isotope effect during dissolution, the similar relationship between amount of Fe leached and δ56Fe for both organic and mineral acids suggests that Fe is leached from particles via proton-promoted dissolution. Several of these leaching techniques will be employed on sediment trap material from the Cariaco Basin to further investigate the relationship between δ56Fe and the labile, bioavailable fraction of iron particles. A leach or series of leaches will be chosen to provide the most useful information about the bioavailability of iron from particles, and they will be applied to filtered particle samples from portions of the US GEOTRACES A10 (North Atlantic) transect. δ56Fe values from particulate material in these regions will provide a better understanding of the sources of particulate iron to the ocean, and may help to trace how particulate iron is involved in global biogeochemical cycles.

  15. [Study on mechanism of SOM stabilization of paddy soils under long-term fertilizations].

    PubMed

    Luo, Lu; Zhou, Ping; Tong, Cheng-Li; Shi, Hui; Wu, Jin-Shui; Huang, Tie-Ping

    2013-02-01

    Fourier transform infrared spectroscopy (FTIR) was applied to study the structure of soil organic matter (SOM) of paddy soils under long-term different fertilization treatments. The aim was to clarify the different distribution of SOM between different fertilization methods and between topsoil and subsoil, and to explore the stability mechanism of SOM under different fertilization treatments. The results showed that the content of topsoil organic carbon (SOC) was the highest under organic-inorganic fertilizations, with the increment of SOC by 18.5%, 12.9% and 18.4% under high organic manure (HOM), low organic manure (LOM) and straw returning (STW) respectively compared with no fertilization treatment (CK). The long-term fertilizations also changed the chemical structure of SOM. As compared with CK, different fertilization treatments increased the functional group absorbing intensity of chemical resistance compounds (aliphatic, aromaticity), carbohydrate and organo-silicon compounds, which was the most distinctive under treatments of HOM, LOM and STW. For example, the absorbing intensity of alkyl was 0.30, 0.25 and 0.29 under HOM, LOM and STW, respectively. These values were increased by 87% , 56% and 81% as compared with that under CK treatment. The functional group absorbing intensity of SOM in the topsoil was stronger than that in the subsoil, with the most distinctive difference under HOM, LOM and STW treatments. The present research indicated that the enhanced chemical resistance of functional group of SOM may contribute to the high contents of SOC in the paddy soils under long-term organic-inorganic fertilizations, which also suggested a chemical stabilization mechanism of SOM in the paddy soils.

  16. Effect of high-temperature on the swellable organically-modified silica (SOMS) and its application to gas-phase hydrodechlorination of trichloroethylene

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Sohn, Hyuntae; Celik, Gokhan; Gunduz, Seval

    Pd catalysts supported on swellable organically-modified silica (SOMS) and high-temperature-treated swellable organically-modified silica (H-SOMS) were characterized and tested for gas-phase hydrodechlorination (HDC) of trichloroethylene (TCE) conditions. The high-temperature treatment on SOMS resulted in an increase in surface area and pore diameter as well as significant improvement of Pd dispersion on H-SOMS with smaller Pd particle sizes compared to the Pd/SOMS catalyst. Although the high-temperature treatment led to some alteration of the SOMS polysiloxane network, the hydrophobicity and organic vapor adsorption characteristics of SOMS were preserved. The reduction and oxidation characteristics of Pd on SOMS and HSOMS were investigated in situmore » using XANES technique. It was found that the Pd sites in the pores of SOMS was accessible to small molecules such as H 2, facilitating the reduction of PdO x, whereas oxidation of metallic Pd was limited even at higher temperatures when O 2 was used. This effect was only observed over Pd/SOMS catalyst. For Pd/H-SOMS, because the pores were more widely open than Pd/SOMS, both reduction and oxidation of Pd were observed. Finally, the catalytic activity of Pd/H-SOMS for gas-phase HDC of TCE was significantly better than Pd/SOMS. When water was added to the reactant stream (TCE + H 2O), both Pd/SOMS and Pd/H-SOMS maintained its catalytic performances due to hydrophobic property of the supports.« less

  17. Effect of biochar application and soil temperature on characteristics of organic matter associated with aggregate-size and density fractions

    NASA Astrophysics Data System (ADS)

    Kaiser, Michael; Grunwald, Dennis; Marhan, Sven; Poll, Christian; Bamminger, Chris; Ludwig, Bernard

    2016-04-01

    Potential increases in soil temperature due to climate change might result in intensified soil organic matter (SOM) decomposition and thus higher CO2 emissions. Management options to increase and stabilize SOM include the application of biochar. However, the effects of biochar amendments under elevated soil temperatures on SOM dynamics are largely unknown. The objective of this study was to analyze the effect of biochar application and elevated soil temperature on the amount and composition of OM associated with fractions of different turnover kinetics. Samples were taken from four treatments of the Hohenheim Climate Change Experiment with the factors temperature (ambient or elevated by 2.5 °C in 4 cm depth, six years before sampling) and biochar (control and 30 t / ha Miscanthus pyrolysis biochar, one year before sampling) in two depths (0 - 5 and 5 - 15 cm). Basal respiration and microbial biomass C were analyzed within an incubation experiment. Aggregate size-fractions were separated by wet-sieving and the free light, occluded light (oLF), and heavy fractions were isolated by density fractionation. All fractions were analyzed for organic C and δ13C as well as by infrared spectroscopy. Preliminary data suggest that biochar significantly increased basal respiration and that the microbial biomass C was significantly affected by elevated temperature. No biochar-C was found in the microbial biomass. Biochar and elevated temperature had only minor effects on the organic C associated with aggregate-size classes, although biochar was incorporated into all fractions already after one year of application. Biochar application significantly increased the organic C associated with oLF. In most samples affected by biochar, the proportion of C=O groups was significantly increased. The results suggest that already after one year, biochar-mineral interactions were formed leading to an aggregate occlusion of applied biochar. At least in the short-term, the effect of biochar on

  18. Labile dissolved organic carbon supply limits hyporheic denitrification

    Treesearch

    Jay P. Zarnetske; Roy Haggerty; Steven M. Wondzell; Michelle A. Baker

    2012-01-01

    We used an in situ steady state 15N-labeled nitrate and acetate well-to-wells injection experiment to determine how the availability of labile dissolved organic carbon as acetate influences microbial denitrification in the hyporheic zone of an upland (third-order) agricultural stream.

  19. PTSD, alcohol dependence, and conduct problems: Distinct pathways via lability and disinhibition.

    PubMed

    Simons, Jeffrey S; Simons, Raluca M; O'Brien, Carol; Stoltenberg, Scott F; Keith, Jessica A; Hudson, Jaime A

    2017-01-01

    This study tested the role of affect lability and disinhibition in mediating associations between PTSD symptoms and two forms of alcohol-related problems, dependence syndrome symptoms (e.g., impaired control over consumption) and conduct problems (e.g., assault, risk behaviors). Genotype at the serotonin transporter linked polymorphic region (5-HTTLPR) was hypothesized to moderate associations between traumatic stress and PTSD symptoms. In addition, the study tested whether childhood traumatic stress moderated associations between combat trauma and PTSD symptoms. Participants were 270 OIF/OEF/OND veterans. The hypothesized model was largely supported. Participants with the low expression alleles of 5-HTTLPR (S or L G ) exhibited stronger associations between childhood (but not combat) traumatic stress and PTSD symptoms. Affect lability mediated the associations between PTSD symptoms and alcohol dependence symptoms. Behavioral disinhibition mediated associations between PTSD symptoms and conduct related problems. Conditional indirect effects indicated stronger associations between childhood traumatic stress and lability, behavioral disinhibition, alcohol consumption, AUD symptoms, and associated conduct problems via PTSD symptoms among those with the low expression 5-HTTLPR alleles. However, interactions between combat trauma and either childhood trauma or genotype were not significant. The results support the hypothesis that affect lability and behavioral disinhibition are potential intermediate traits with distinct associations with AUD and associated externalizing problems. Copyright © 2016 Elsevier Ltd. All rights reserved.

  20. Labile and recalcitrant organic matter utilization by river biofilm under increasing water temperature.

    PubMed

    Ylla, Irene; Romaní, Anna M; Sabater, Sergi

    2012-10-01

    Microbial biofilms in rivers contribute to the decomposition of the available organic matter which typically shows changes in composition and bioavailability due to their origin, seasonality, and watershed characteristics. In the context of global warming, enhanced biofilm organic matter decomposition would be expected but this effect could be specific when either a labile or a recalcitrant organic matter source would be available. A laboratory experiment was performed to mimic the effect of the predicted increase in river water temperature (+4 °C above an ambient temperature) on the microbial biofilm under differential organic matter sources. The biofilm microbial community responded to higher water temperature by increasing bacterial cell number, respiratory activity (electron transport system) and microbial extracellular enzymes (extracellular enzyme activity). At higher temperature, the phenol oxidase enzyme explained a large fraction of respiratory activity variation suggesting an enhanced microbial use of degradation products from humic substances. The decomposition of hemicellulose (β-xylosidase activity) seemed to be also favored by warmer conditions. However, at ambient temperature, the enzymes highly responsible for respiration activity variation were β-glucosidase and leu-aminopeptidase, suggesting an enhanced microbial use of polysaccharides and peptides degradation products. The addition of labile dissolved organic carbon (DOC; dipeptide plus cellobiose) caused a further augmentation of heterotrophic biomass and respiratory activity. The changes in the fluorescence index and the ratio Abs(250)/total DOC indicated that higher temperature accelerated the rates of DOC degradation. The experiment showed that the more bioavailable organic matter was rapidly cycled irrespective of higher temperature while degradation of recalcitrant substances was enhanced by warming. Thus, pulses of carbon at higher water temperature might have consequences for DOC

  1. Annual burning of a tallgrass prairie inhibits C and N cycling in soil, increasing recalcitrant pyrogenic organic matter storage while reducing N availability.

    PubMed

    Soong, Jennifer L; Cotrufo, M Francesca

    2015-06-01

    Grassland ecosystems store an estimated 30% of the world's total soil C and are frequently disturbed by wildfires or fire management. Aboveground litter decomposition is one of the main processes that form soil organic matter (SOM). However, during a fire biomass is removed or partially combusted and litter inputs to the soil are substituted with inputs of pyrogenic organic matter (py-OM). Py-OM accounts for a more recalcitrant plant input to SOM than fresh litter, and the historical frequency of burning may alter C and N retention of both fresh litter and py-OM inputs to the soil. We compared the fate of these two forms of plant material by incubating (13) C- and (15) N-labeled Andropogon gerardii litter and py-OM at both an annually burned and an infrequently burned tallgrass prairie site for 11 months. We traced litter and py-OM C and N into uncomplexed and organo-mineral SOM fractions and CO2 fluxes and determined how fire history affects the fate of these two forms of aboveground biomass. Evidence from CO2 fluxes and SOM C:N ratios indicates that the litter was microbially transformed during decomposition while, besides an initial labile fraction, py-OM added to SOM largely untransformed by soil microbes. Additionally, at the N-limited annually burned site, litter N was tightly conserved. Together, these results demonstrate how, although py-OM may contribute to C and N sequestration in the soil due to its resistance to microbial degradation, a long history of annual removal of fresh litter and input of py-OM infers N limitation due to the inhibition of microbial decomposition of aboveground plant inputs to the soil. These results provide new insight into how fire may impact plant inputs to the soil, and the effects of py-OM on SOM formation and ecosystem C and N cycling. © 2014 John Wiley & Sons Ltd.

  2. Assessment of Affect Lability: Psychometric Properties of the ALS-18.

    PubMed

    Contardi, Anna; Imperatori, Claudio; Amati, Italia; Balsamo, Michela; Innamorati, Marco

    2018-01-01

    Affect lability, an important aspect of emotion dysregulation, characterizes several psychiatric conditions. The short Affective Lability Scales (ALS-18) measures three aspects of changeability between euthymia and affect states (Anxiety/Depression, AD; Depression/Elation, DE; and Anger, Ang). The aim of our study was to investigate the psychometric characteristics of an Italian version of the ALS-18 in a sample of adults recruited from the general population. The sample was composed of 494 adults (343 women and 151 men) aged 18 and higher (mean age = 31.73 years, SD = 12.6). All participants were administered a checklist assessing socio-demographic variables, the ALS-18 and measures of depression and difficulties in emotion regulation. Confirmatory factor analyses indicated adequate fit of the three-factor model (RMSEA = 0.061, 95% CI = 0.054/0.069; CFI = 0.99; SRMR = 0.055), and the presence of a higher-order general factor. Internal consistency was satisfactory for all the lower-order dimensions and the general factor (ordinal α > 0.70). The ALS-18 was significantly associated with concurrent measures of depression and difficulties in emotion regulation. These findings indicate that the ALS-18 is a valid and reliable instrument for measuring affect lability, although discriminant validity of subdimensions scores could be problematic.

  3. Ligand lability and chirality inversion in yb heterobimetallic catalysts.

    PubMed

    Di Bari, Lorenzo; Lelli, Moreno; Salvadori, Piero

    2004-09-20

    We have investigated the exchange dynamics between the free and bound ligand in K3[Yb[(R)-binol]3], the most active heterobimetallic lanthanoid catalyst for cyclic imine hydrophosphonylation; we found that the Yb-binol bond is labile. The rate constant for this exchange was determined through NMR saturation transfer experiments. Upon addition of (S)-binaphthol, ligand exchange leads to the formation of a small quantity of heterochiral complexes and, in the presence of a molar excess of (S)-binaphthol, to chirality inversion of the whole complex. This demonstrates that, in contrast to other analogous systems, K3[Yb(binol)3] displays a strong chiral discrimination, with the overwhelming preference for ligands of the same configuration. The lability of Yb-binol bond in THF may suggest a ligand-to-substrate exchange as a key step in the catalytic process.

  4. On the Relationship between Variational Level Set-Based and SOM-Based Active Contours

    PubMed Central

    Abdelsamea, Mohammed M.; Gnecco, Giorgio; Gaber, Mohamed Medhat; Elyan, Eyad

    2015-01-01

    Most Active Contour Models (ACMs) deal with the image segmentation problem as a functional optimization problem, as they work on dividing an image into several regions by optimizing a suitable functional. Among ACMs, variational level set methods have been used to build an active contour with the aim of modeling arbitrarily complex shapes. Moreover, they can handle also topological changes of the contours. Self-Organizing Maps (SOMs) have attracted the attention of many computer vision scientists, particularly in modeling an active contour based on the idea of utilizing the prototypes (weights) of a SOM to control the evolution of the contour. SOM-based models have been proposed in general with the aim of exploiting the specific ability of SOMs to learn the edge-map information via their topology preservation property and overcoming some drawbacks of other ACMs, such as trapping into local minima of the image energy functional to be minimized in such models. In this survey, we illustrate the main concepts of variational level set-based ACMs, SOM-based ACMs, and their relationship and review in a comprehensive fashion the development of their state-of-the-art models from a machine learning perspective, with a focus on their strengths and weaknesses. PMID:25960736

  5. Repair of radiation-induced heat-labile sites is independent of DNA-PKcs, XRCC1 or PARP

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Stenerlöw, Bo; Karlsson, Karin H.; Radulescu, Irina

    2008-04-29

    Ionizing radiation induces a variety of different DNA lesions: in addition to the most critical DNA damage, the DSB, numerous base alterations, SSBs and other modifications of the DNA double-helix are formed. When several non-DSB lesions are clustered within a short distance along DNA, or close to a DSB, they may interfere with the repair of DSBs and affect the measurement of DSB induction and repair. We have previously shown that a substantial fraction of DSBs measured by pulsed-field gel electrophoresis (PFGE) are in fact due to heat-labile sites (HLS) within clustered lesions, thus reflecting an artifact of preparation ofmore » genomic DNA at elevated temperature. To further characterize the influence of HLS on DSB induction and repair, four human cell lines (GM5758, GM7166, M059K, U-1810) with apparently normal DSB rejoining were tested for bi-phasic rejoining after gamma irradiation. When heat-released DSBs were excluded from the measurements the fraction of fast rejoining decreased to less than 50% of the total. However, neither the half-times of the fast (t{sub 1/2} = 7-8 min) or slow (t{sub 1/2} = 2.5 h) DSB rejoining were changed significantly. At t=0 the heat-released DSBs accounted for almost 40% of the DSBs, corresponding to 10 extra DSB/cell/Gy in the initial DSB yield. These heat-released DSBs were repaired within 60-90 min in all tested cells, including M059K cells treated with wortmannin or DNA-PKcs defect M059J cells. Furthermore, cells lacking XRCC1 or Poly(ADP-ribose) polymerase-1 (PARP-1) rejoined both total DSBs and heat-released DSBs similar to normal cells. In summary, the presence of heat-labile sites have a substantial impact on DSB induction yields and DSB rejoining rates measured by pulsed-field gel electrophoresis, and HLS repair is independent of DNA-PKcs, XRCC1 and PARP.« less

  6. The evolution of labile traits in sex- and age-structured populations.

    PubMed

    Childs, Dylan Z; Sheldon, Ben C; Rees, Mark

    2016-03-01

    Many quantitative traits are labile (e.g. somatic growth rate, reproductive timing and investment), varying over the life cycle as a result of behavioural adaptation, developmental processes and plastic responses to the environment. At the population level, selection can alter the distribution of such traits across age classes and among generations. Despite a growing body of theoretical research exploring the evolutionary dynamics of labile traits, a data-driven framework for incorporating such traits into demographic models has not yet been developed. Integral projection models (IPMs) are increasingly being used to understand the interplay between changes in labile characters, life histories and population dynamics. One limitation of the IPM approach is that it relies on phenotypic associations between parents and offspring traits to capture inheritance. However, it is well-established that many different processes may drive these associations, and currently, no clear consensus has emerged on how to model micro-evolutionary dynamics in an IPM framework. We show how to embed quantitative genetic models of inheritance of labile traits into age-structured, two-sex models that resemble standard IPMs. Commonly used statistical tools such as GLMs and their mixed model counterparts can then be used for model parameterization. We illustrate the methodology through development of a simple model of egg-laying date evolution, parameterized using data from a population of Great tits (Parus major). We demonstrate how our framework can be used to project the joint dynamics of species' traits and population density. We then develop a simple extension of the age-structured Price equation (ASPE) for two-sex populations, and apply this to examine the age-specific contributions of different processes to change in the mean phenotype and breeding value. The data-driven framework we outline here has the potential to facilitate greater insight into the nature of selection and its

  7. Response of soil organic carbon fractions, microbial community composition and carbon mineralization to high-input fertilizer practices under an intensive agricultural system

    PubMed Central

    Wu, Xueping; Gebremikael, Mesfin Tsegaye; Wu, Huijun; Cai, Dianxiong; Wang, Bisheng; Li, Baoguo; Zhang, Jiancheng; Li, Yongshan; Xi, Jilong

    2018-01-01

    Microbial mechanisms associated with soil organic carbon (SOC) decomposition are poorly understood. We aim to determine the effects of inorganic and organic fertilizers on soil labile carbon (C) pools, microbial community structure and C mineralization rate under an intensive wheat-maize double cropping system in Northern China. Soil samples in 0–10 cm layer were collected from a nine-year field trial involved four treatments: no fertilizer, CK; nitrogen (N) and phosphorus (P) fertilizers, NP; maize straw combined with NP fertilizers, NPS; and manure plus straw and NP fertilizers, NPSM. Soil samples were analyzed to determine labile C pools (including dissolved organic C, DOC; light free organic C, LFOC; and microbial biomass C, MBC), microbial community composition (using phospholipid fatty acid (PLFA) profiles) and SOC mineralization rate (from a 124-day incubation experiment). This study demonstrated that the application of chemical fertilizers (NP) alone did not alter labile C fractions, soil microbial communities and SOC mineralization rate from those observed in the CK treatment. Whereas the use of straw in conjunction with chemical fertilizers (NPS) became an additional labile substrate supply that decreased C limitation, stimulated growth of all PLFA-related microbial communities, and resulted in 53% higher cumulative mineralization of C compared to that of CK. The SOC and its labile fractions explained 78.7% of the variance of microbial community structure. Further addition of manure on the top of straw in the NPSM treatment did not significantly increase microbial community abundances, but it did alter microbial community structure by increasing G+/G- ratio compared to that of NPS. The cumulative mineralization of C was 85% higher under NPSM fertilization compared to that of CK. Particularly, the NPSM treatment increased the mineralization rate of the resistant pool. This has to be carefully taken into account when setting realistic and effective goals

  8. Response of soil organic carbon fractions, microbial community composition and carbon mineralization to high-input fertilizer practices under an intensive agricultural system.

    PubMed

    Li, Jing; Wu, Xueping; Gebremikael, Mesfin Tsegaye; Wu, Huijun; Cai, Dianxiong; Wang, Bisheng; Li, Baoguo; Zhang, Jiancheng; Li, Yongshan; Xi, Jilong

    2018-01-01

    Microbial mechanisms associated with soil organic carbon (SOC) decomposition are poorly understood. We aim to determine the effects of inorganic and organic fertilizers on soil labile carbon (C) pools, microbial community structure and C mineralization rate under an intensive wheat-maize double cropping system in Northern China. Soil samples in 0-10 cm layer were collected from a nine-year field trial involved four treatments: no fertilizer, CK; nitrogen (N) and phosphorus (P) fertilizers, NP; maize straw combined with NP fertilizers, NPS; and manure plus straw and NP fertilizers, NPSM. Soil samples were analyzed to determine labile C pools (including dissolved organic C, DOC; light free organic C, LFOC; and microbial biomass C, MBC), microbial community composition (using phospholipid fatty acid (PLFA) profiles) and SOC mineralization rate (from a 124-day incubation experiment). This study demonstrated that the application of chemical fertilizers (NP) alone did not alter labile C fractions, soil microbial communities and SOC mineralization rate from those observed in the CK treatment. Whereas the use of straw in conjunction with chemical fertilizers (NPS) became an additional labile substrate supply that decreased C limitation, stimulated growth of all PLFA-related microbial communities, and resulted in 53% higher cumulative mineralization of C compared to that of CK. The SOC and its labile fractions explained 78.7% of the variance of microbial community structure. Further addition of manure on the top of straw in the NPSM treatment did not significantly increase microbial community abundances, but it did alter microbial community structure by increasing G+/G- ratio compared to that of NPS. The cumulative mineralization of C was 85% higher under NPSM fertilization compared to that of CK. Particularly, the NPSM treatment increased the mineralization rate of the resistant pool. This has to be carefully taken into account when setting realistic and effective goals

  9. [Effects of different cultivation patterns on soil aggregates and organic carbon fractions].

    PubMed

    Qiu, Xiao-Lei; Zong, Liang-Gang; Liu, Yi-Fan; Du, Xia-Fei; Luo, Min; Wang, Run-Chi

    2015-03-01

    Combined with the research in an organic farm in the past 10 years, differences of soil aggregates composition, distribution and organic carbon fractions between organic and conventional cultivation were studied by simultaneous sampling analysis. The results showed that the percentages of aggregates (> 1 mm, 1-0.5 mm, 0.5-0.25 mm and < 0.25 mm) in the conventional cultivation were 23.75%, 15.15%, 19.98% and 38.09%, while those in organic cultivation were 9.73%, 18.41%, 24.46% and 43.90%, respectively. The percentage of < 0.25 mm micro-aggregates was significantly higher in organic cultivation than that in conventional cultivation. Organic cultivation increased soil organic carbon (average of 17.95 g x kg(-1)) and total nitrogen contents (average of 1.51 g x kg(-1)). Among the same aggregates in organic cultivation, the average content of heavy organic carbon fraction was significantly higher than that in conventional cultivation. This fraction accumulated in < 0. 25 mm micro-aggregates, which were main storage sites of stable organic carbon. In organic cultivation, the content of labile organic carbon in > 1 mm macro-aggregates was significantly higher than that in conventional cultivation, while no significant difference was found among the other aggregates, indicating that the labile organic carbon was enriched in > 1 mm macro-aggregates. Organic cultivation increased the amounts of organic carbon and its fractions, reduced tillage damage to aggregates, and enhanced the stability of organic carbon. Organic cultivation was therefore beneficial for soil carbon sequestration. The findings of this research may provide theoretical basis for further acceleration of the organic agriculture development.

  10. Peroral Immunization of Rats with Escherichia coli Heat-Labile Enterotoxin Delivered by Microspheres

    PubMed Central

    Klipstein, Frederick A.; Engert, Richard F.; Sherman, William T.

    1983-01-01

    The antigenicity of the Escherichia coli heat-labile enterotoxin was not protected against the adverse effect of gastric acidity when the toxin was given together with bicarbonate for peroral immunization to rats, but immunization with the heat-labile enterotoxin encapsulated in pH-dependent microspheres aroused the same strong degree of serum and mucosal antitoxin responses and of protection against challenge as was achieved by peroral immunization after ablation of gastric secretions by pretreatment with cimetidine. PMID:6339378

  11. Controls on the distribution of fluorescent dissolved organic matter during an under-ice algal bloom in the western Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Mendoza, Wilson G.; Weiss, Elliot L.; Schieber, Brian; Greg Mitchell, B.

    2017-07-01

    In this study we used fluorescence excitation and emission matrix spectroscopy, hydrographic data, and a self-organizing map (SOM) analysis to assess the spatial distribution of labile and refractory fluorescent dissolved organic matter (FDOM) for the Chukchi and Beaufort Seas at the time of a massive under-ice phytoplankton bloom during early summer 2011. Biogeochemical properties were assessed through decomposition of water property classes and sample classification that employed a SOM neural network-based analysis which classified 10 clusters from 269 samples and 17 variables. The terrestrial, humic-like component FDOM (ArC1, 4.98 ± 1.54 Quinine Sulfate Units (QSU)) and protein-like component FDOM (ArC3, 1.63 ± 0.88 QSU) were found to have elevated fluorescence in the Lower Polar Mixed Layer (LPML) (salinity 29.56 ± 0.76). In the LPML water mass, the observed contribution of meteoric water fraction was 17%, relative to a 12% contribution from the sea ice melt fraction. The labile ArC3-protein-like component (2.01 ± 1.92 QSU) was also observed to be elevated in the Pacific Winter Waters mass, where the under-ice algal bloom was observed ( 40-50 m). We interpreted these relationships to indicate that the accumulation and variable distribution of the protein-like component on the shelf could be influenced directly by sea ice melt, transport, and mixing processes and indirectly by the in situ algal bloom and microbial activity. ArC5, corresponding to what is commonly considered marine humic FDOM, indicated a bimodal distribution with high values in both the freshest and saltiest waters. The association of ArC5 with deep, dense salty water is consistent with this component as refractory humic-like FDOM, whereas our evidence of a terrestrial origin challenges this classic paradigm for this component.

  12. Upregulation of transferrin receptor-1 induces cholangiocarcinoma progression via induction of labile iron pool.

    PubMed

    Jamnongkan, Wassana; Thanan, Raynoo; Techasen, Anchalee; Namwat, Nisana; Loilome, Watcharin; Intarawichian, Piyapharom; Titapun, Attapol; Yongvanit, Puangrat

    2017-07-01

    Labile iron pool is a cellular source of ions available for Fenton reactions resulting in oxidative stress. Living organisms avoid an excess of free irons by a tight control of iron homeostasis. We investigated the altered expression of iron regulatory proteins and iron discrimination in the development of liver fluke-associated cholangiocarcinoma. Additionally, the levels of labile iron pool and the functions of transferrin receptor-1 on cholangiocarcinoma development were also identified. Iron deposition was determined using the Prussian blue staining method in human cholangiocarcinoma tissues. We investigated the alteration of iron regulatory proteins including transferrin, transferrin receptor-1, ferritin, ferroportin, hepcidin, and divalent metal transporter-1 in cholangiocarcinoma tissues using immunohistochemistry. The clinicopathological data of cholangiocarcinoma patients and the expressions of proteins were analyzed. Moreover, the level of intracellular labile iron pool in cholangiocarcinoma cell lines was identified by the RhoNox-1 staining method. We further demonstrated transferrin receptor-1 functions on cell proliferation and migration upon small interfering RNA for human transferrin receptor 1 transfection. Results show that Iron was strongly stained in tumor tissues, whereas negative staining was observed in normal bile ducts of healthy donors. Interestingly, high iron accumulation was significantly correlated with poor prognosis of cholangiocarcinoma patients. The expressions of iron regulatory proteins in human cholangiocarcinoma tissues and normal liver from cadaveric donors revealed that transferrin receptor-1 expression was increased in the cancer cells of cholangiocarcinoma tissues when compared with the adjacent normal bile ducts and was significantly correlated with cholangiocarcinoma metastasis. Labile iron pool level and transferrin receptor-1 expression were significantly increased in KKU-214 and KKU-213 when compared with cholangiocyte

  13. Electrodermal lability as an indicator for subjective sleepiness during total sleep deprivation.

    PubMed

    Michael, Lars; Passmann, Sven; Becker, Ruth

    2012-08-01

    The present study addresses the suitability of electrodermal lability as an indicator of individual vulnerability to the effects of total sleep deprivation. During two complete circadian cycles, the effects of 48h of total sleep deprivation on physiological measures (electrodermal activity and body temperature), subjective sleepiness (measured by visual analogue scale and tiredness symptom scale) and task performance (reaction time and errors in a go/no go task) were investigated. Analyses of variance with repeated measures revealed substantial decreases of the number of skin conductance responses, body temperature, and increases for subjective sleepiness, reaction time and error rates. For all changes, strong circadian oscillations could be observed as well. The electrodermal more labile subgroup reported higher subjective sleepiness compared with electrodermal more stable participants, but showed no differences in the time courses of body temperature and task performance. Therefore, electrodermal lability seems to be a specific indicator for the changes in subjective sleepiness due to total sleep deprivation and circadian oscillations, but not a suitable indicator for vulnerability to the effects of sleep deprivation per se. © 2011 European Sleep Research Society.

  14. Determination of labile copper, cobalt, and chromium in textile mill wastewater

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Crain, J.S.; Essling, A.M.; Kiely, J.T.

    1997-01-01

    Copper, chromium, and cobalt species present in filtered wastewater effluent were separated by cation exchange and reverse phase chromatography. Three sample fractions were obtained: one containing metal cations (i.e., trivalent Cr, divalent Cu, and divalent Co), one containing organic species (including metallized dyes), and one containing other unretained species. The metal content of each fraction was determined by inductively coupled plasma atomic emission spectroscopy (ICP-AES). The sum of the corrected data was compared to the metal content of a filtered effluent aliquot digested totally with fuming sulfuric acid. Other aliquots of the filtered effluent were spiked with the metals ofmore » interest and digested to confirm chemical yield and accuracy. Method detection limits were consistently below 20 {mu}g L{sup -1} for Cu, 30 {mu}g L{sup -1} for Co, and 10 {mu}g L{sup -1} for Cr. Spike recoveries for undifferentiated Cu and Cr were statistically indistinguishable from unity; although Co spike recoveries were slightly low ({approximately}95%), its chemical yield was 98%. Copper retention on the sodium sulfonate cation exchange resin was closely correlated with the [EDTA]/[Cu] ratio, suggesting that metals retained upon the cation exchange column were assignable to labile metal species; however, mass balances for all three elements, though reasonable ({approximately}90%), were significantly different from unity. Mechanical factors may have contributed to the material loss, but other data suggest that some metal species reacted irreversibly with the reverse phase column. 3 refs., 2 figs., 4 tabs.« less

  15. Soil carbon, nitrogen and phosphorus changes under sugarcane expansion in Brazil.

    PubMed

    Franco, André L C; Cherubin, Maurício R; Pavinato, Paulo S; Cerri, Carlos E P; Six, Johan; Davies, Christian A; Cerri, Carlos C

    2015-05-15

    Historical data of land use change (LUC) indicated that the sugarcane expansion has mainly displaced pasture areas in Central-Southern Brazil, globally the largest producer, and that those pastures were prior established over native forests in the Cerrado biome. We sampled 3 chronosequences of land use comprising native vegetation (NV), pasture (PA), and sugarcane crop (SC) in the sugarcane expansion region to assess the effects of LUC on soil carbon, nitrogen, and labile phosphorus pools. Thirty years after conversion of NV to PA, we found significant losses of original soil organic matter (SOM) from NV, while insufficient new organic matter was introduced from tropical grasses into soil to offset the losses, reflecting in a net C emission of 0.4 Mg ha(-1)yr(-1). These findings added to decreases in (15)N signal indicated that labile portions of SOM are preserved under PA. Afterwards, in the firsts five years after LUC from PA to SC, sparse variations were found in SOM levels. After more than 20 years of sugarcane crop, however, there were losses of 40 and 35% of C and N stocks, respectively, resulting in a rate of C emission of 1.3 Mg ha(-1)yr(-1) totally caused by the respiration of SOM from C4-cycle plants. In addition, conversion of pastures to sugarcane mostly increased (15)N signal, indicating an accumulation of more recalcitrant SOM under sugarcane. The microbe- and plant-available P showed site-specific responses to LUC as a function of different P-input managements, with the biological pool mostly accounting for more than 50% of the labile P in both anthropic land uses. With the projections of 6.4 Mha of land required by 2021 for sugarcane expansion in Brazil to achieve ethanol's demand, this explanatory approach to the responses of SOM to LUC will contribute for an accurate assessment of the CO₂ balance of sugarcane ethanol. Copyright © 2015 Elsevier B.V. All rights reserved.

  16. Arctic Tundra Soils: A Microbial Feast That Shrubs Will Cease

    NASA Astrophysics Data System (ADS)

    Machmuller, M.; Calderon, F.; Cotrufo, M. F.; Lynch, L.; Paul, E. A.; Wallenstein, M. D.

    2016-12-01

    Rapid climate warming may already be driving rapid decomposition of the vast stocks of carbon in Arctic tundra soils. However, stimulated decomposition may also release nitrogen and support increased plant productivity, potentially counteracting soil carbon losses. At the same time, these two processes interact, with plant derived carbon potentially fueling soil microbes to attack soil organic matter (SOM) to acquire nitrogen- a process known as priming. Thus, differences in the physiology, stoichiometry and microbial interactions among plant species could affect climate-carbon feedbacks. To reconcile these interactive mechanisms, we examined how vegetation type (Betula nana and Eriophorum vaginatum) and fertilization (short-term and long-term) influenced the decomposition of native SOM after labile carbon and nutrient addition. We hypothesized that labile carbon inputs would stimulate the loss of native SOM, but the magnitude of this effect would be indirectly related to soil nitrogen concentrations (e.g. SOM priming would be highest in N-limited soils). We added isotopically enriched (13C) glucose and ammonium nitrate to soils under shrub (B. nana) and tussock (E. vaginatum) vegetation. We found that nitrogen additions stimulated priming only in tussock soils, characterized by lower nutrient concentrations and microbial biomass (p<0.05). There was no evidence of priming in soils that had been fertilized for >20yrs. Rather, we found that long-term fertilization shifted SOM chemistry towards a greater abundance of recalcitrant SOM, lower microbial biomass, and decreased SOM respiration (p<0.05). Our results suggest that, in the short-term, the magnitude of SOM priming is dependent on vegetation and soil nitrogen concentrations, but this effect may not persist if shrubs increase in abundance under climate warming. Therefore, including nitrogen as a control on SOM decomposition and priming is critical to accurately model the effects of climate change on arctic carbon

  17. Soil Phosphorus Fractionation during Forest Development on Landslide Scars in the Luquillo Mountains, Puerto Rico.

    Treesearch

    Jacqueline Frizano; Arthur H. Johnson; David R. Vann; Frederick N. Scatena

    2002-01-01

    Mineral soils from a chronosequence of landslide scars ranging in age from 1 to more than 55 years in a subtropical montane rain forest of eastern Puerto Rico were used to determine the rate at which labile P capital recovers during primary succession. Nine organic and inorganic soil P fractions were measured using the Hedley sequential extraction procedure. Deep soil...

  18. SOM Stability under Long-term Recovery from Acidic Deposition in a Northern Hardwood Forest

    NASA Astrophysics Data System (ADS)

    Marinos, R.; Bernhardt, E. S.; Groffman, P. M.; Likens, G.; Rosi-Marshall, E. J.

    2016-12-01

    Forested ecosystems in the Northeast U.S.A. are currently recovering from decades of acidic deposition that decreased soil pH, leached base cations, and increased soluble aluminum (Al) in soils. Because most research examining SOM dynamics in these ecosystems has taken place against a background of acidic deposition, it remains poorly understood how SOM pools will change as a result of the long-term trajectory of recovery from acidic deposition throughout the region. These potential changes may alter soil fertility status as well as the chemistry of receiving freshwater bodies. Watershed-scale experiments that increase soil pH and base cation status may provide insight into how SOM pools in these recovering ecosystems will respond on timescales of decades to centuries, but results from these experiments have been equivocal. At Hubbard Brook Experimental Forest in New Hampshire, a watershed-scale acid remediation treatment of calcium silicate caused a 40% decline of SOM pools in the humic (Oa) soil horizon, in addition to increasing soil pH and base saturation. We sought to understand the mechanisms driving this substantial loss of SOM. We found that, in the Oa horizon of the treatment watershed, respiration and nitrogen (N) mineralization were significantly, positively correlated with exchangeable calcium (Ca) and uncorrelated with soil pH; in a linear regression, exchangeable Ca explained 76% of the variation in respiration and 74% of the variation in nitrogen mineralization in the treatment soils. These metrics were uncorrelated in soils from a nearby reference watershed, where Ca is uniformly low. This suggests that the rate and magnitude of soil Ca changes during recovery from acid deposition may provide an important long-term control on the stability of SOM in these ecosystems. Additionally, we found substantially enhanced in-stream biotic uptake of the inorganic N released from this enhanced SOM decomposition, with growing-season N flux from the treatment

  19. Long term repeated prescribed burning increases evenness in the basidiomycete laccase gene pool in forest soils.

    PubMed

    Artz, Rebekka R E; Reid, Eileen; Anderson, Ian C; Campbell, Colin D; Cairney, John W G

    2009-03-01

    Repeated prescribed burning alters the biologically labile fraction of nutrients and carbon of soil organic matter (SOM). Using a long-term (30 years) repeated burning experiment where burning has been carried out at a 2- or 4-year frequency, we analysed the effect of prescribed burning on gross potential C turnover rates and phenol oxidase activity in relation to shifts in SOM composition as observed using Fourier-transform infrared spectroscopy. In tandem, we assessed the genetic diversity of basidiomycete laccases. While the overall effect of burning was a decline in phenol oxidase activity, Shannon diversity and evenness of laccases was significantly higher in burned sites. Co-correspondence analysis of SOM composition and laccase operational taxonomic unit frequency data also suggested a strong correlation. While this correlation could indicate that the observed increase in laccase genetic diversity due to burning is due to increased resource diversity, a temporal replacement of the most abundant members of the assembly by an otherwise dormant pool of fungi cannot be excluded. As such, our results fit the intermediate disturbance hypothesis. Effects were stronger in plots burned in 2-year rotations, suggesting that the 4-year burn frequency may be a more sustainable practice to ensure the long-term stability of C cycling in such ecosystems.

  20. Changes in lead and zinc lability during weathering-induced acidification of desert mine tailings: Coupling chemical and micro-scale analyses.

    PubMed

    Hayes, Sarah M; White, Scott A; Thompson, Thomas L; Maier, Raina M; Chorover, Jon

    2009-12-01

    Desert mine tailings may accumulate toxic metals in the near surface centimeters because of low water through-flux rates. Along with other constraints, metal toxicity precludes natural plant colonization even over decadal time scales. Since unconsolidated particles can be subjected to transport by wind and water erosion, potentially resulting in direct human and ecosystem exposure, there is a need to know how the lability and form of metals change in the tailings weathering environment. A combination of chemical extractions, X-ray diffraction, micro-X-ray fluorescence spectroscopy, and micro-Raman spectroscopy were employed to study Pb and Zn contamination in surficial arid mine tailings from the Arizona Klondyke State Superfund Site. Initial site characterization indicated a wide range in pH (2.5 to 8.0) in the surficial tailings pile. Ligand-promoted (DTPA) extractions, used to assess plant-available metal pools, showed decreasing available Zn and Mn with progressive tailings acidification. Aluminum shows the inverse trend, and Pb and Fe show more complex pH dependence. Since the tailings derive from a common source and parent mineralogy, it is presumed that variations in pH and "bioavailable" metal concentrations result from associated variation in particle-scale geochemistry. Four sub-samples, ranging in pH from 2.6 to 5.4, were subjected to further characterization to elucidate micro-scale controls on metal mobility. With acidification, total Pb (ranging from 5 - 13 g kg(-1)) was increasingly associated with Fe and S in plumbojarosite aggregates. For Zn, both total (0.4 - 6 g kg(-1)) and labile fractions decreased with decreasing pH. Zinc was found to be primarily associated with the secondary Mn phases manjiroite and chalcophanite. The results suggest that progressive tailings acidification diminishes the overall lability of the total Pb and Zn pools.

  1. Changes in lead and zinc lability during weathering-induced acidification of desert mine tailings: Coupling chemical and micro-scale analyses

    PubMed Central

    Hayes, Sarah M.; White, Scott A.; Thompson, Thomas L.; Maier, Raina M.; Chorover, Jon

    2009-01-01

    Desert mine tailings may accumulate toxic metals in the near surface centimeters because of low water through-flux rates. Along with other constraints, metal toxicity precludes natural plant colonization even over decadal time scales. Since unconsolidated particles can be subjected to transport by wind and water erosion, potentially resulting in direct human and ecosystem exposure, there is a need to know how the lability and form of metals change in the tailings weathering environment. A combination of chemical extractions, X-ray diffraction, micro-X-ray fluorescence spectroscopy, and micro-Raman spectroscopy were employed to study Pb and Zn contamination in surficial arid mine tailings from the Arizona Klondyke State Superfund Site. Initial site characterization indicated a wide range in pH (2.5 to 8.0) in the surficial tailings pile. Ligand-promoted (DTPA) extractions, used to assess plant-available metal pools, showed decreasing available Zn and Mn with progressive tailings acidification. Aluminum shows the inverse trend, and Pb and Fe show more complex pH dependence. Since the tailings derive from a common source and parent mineralogy, it is presumed that variations in pH and “bioavailable” metal concentrations result from associated variation in particle-scale geochemistry. Four sub-samples, ranging in pH from 2.6 to 5.4, were subjected to further characterization to elucidate micro-scale controls on metal mobility. With acidification, total Pb (ranging from 5 – 13 g kg−1) was increasingly associated with Fe and S in plumbojarosite aggregates. For Zn, both total (0.4 – 6 g kg−1) and labile fractions decreased with decreasing pH. Zinc was found to be primarily associated with the secondary Mn phases manjiroite and chalcophanite. The results suggest that progressive tailings acidification diminishes the overall lability of the total Pb and Zn pools. PMID:20161492

  2. Solid oxide membrane (SOM) process for ytterbium and silicon production from their oxides

    NASA Astrophysics Data System (ADS)

    Jiang, Yihong

    The Solid oxide membrane (SOM) electrolysis is an innovative green technology that produces technologically important metals directly from their respective oxides. A yttria-stabilized zirconia (YSZ) tube, closed at one end is employed to separate the molten salt containing dissolved metal oxides from the anode inside the YSZ tube. When the applied electric potential between the cathode in the molten salt and the anode exceeds the dissociation potential of the desired metal oxides, oxygen ions in the molten salt migrate through the YSZ membrane and are oxidized at the anode while the dissolved metal cations in the flux are reduced to the desired metal at the cathode. Compared with existing metal production processes, the SOM process has many advantages such as one unit operation, less energy consumption, lower capital costs and zero carbon emission. Successful implementation of the SOM electrolysis process would provide a way to mitigate the negative environmental impact of the metal industry. Successful demonstration of producing ytterbium (Yb) and silicon (Si) directly from their respective oxides utilizing the SOM electrolysis process is presented in this dissertation. During the SOM electrolysis process, Yb2O3 was reduced to Yb metal on an inert cathode. The melting point of the supporting electrolyte (LiF-YbF3-Yb2O3) was determined by differential thermal analysis (DTA). Static stability testing confirmed that the YSZ tube was stable with the flux at operating temperature. Yb metal deposit on the cathode was confirmed by scanning electron microscopy (SEM) and energy dispersive x-ray spectroscopy (EDS). During the SOM electrolysis process for silicon production, a fluoride based flux based on BaF2, MgF2, and YF3 was engineered to serve as the liquid electrolyte for dissolving silicon dioxide. YSZ tube was used to separate the molten salt from an anode current collector in the liquid silver. Liquid tin was chosen as cathode to dissolve the reduced silicon during

  3. Evidence for the enhanced lability of dissolved organic matter following permafrost slope disturbance in the Canadian High Arctic

    NASA Astrophysics Data System (ADS)

    Woods, Gwen C.; Simpson, Myrna J.; Pautler, Brent G.; Lamoureux, Scott F.; Lafrenière, Melissa J.; Simpson, André J.

    2011-11-01

    Arctic landscapes are believed to be highly sensitive to climate change and accelerated disturbance of permafrost is expected to significantly impact the rate of carbon cycling. While half the global soil organic matter (SOM) is estimated to reside in Arctic soils, projected warmer temperatures and permafrost disturbance will release much of this SOM into waterways in the form of dissolved organic matter (DOM). The spring thaw and subsequent flushing of soils releases the highest contributions of DOM annually but has historically been undersampled due to the difficulties of sampling during this period. In this study, passive samplers were placed throughout paired High Arctic watersheds during the duration of the 2008 spring flush in Nunavut, Canada. The watersheds are very similar with the exception of widespread active layer detachments (ALDs) that occurred within one of the catchments during a period of elevated temperatures in the summer of 2007. DOM samples were analyzed for structural and spectral characteristics via nuclear magnetic resonance (NMR) and fluorescence spectroscopy as well as vulnerability to degradation with simulated solar exposure. Lignin-derived phenols were further assessed utilizing copper(II) oxide (CuO) oxidation and gas chromatography/mass spectrometry (GC/MS). The samples were found to have very low dissolved lignin phenol content (˜0.07% of DOC) and appear to originate from primarily non-woody angiosperm vegetation. The acid/aldehyde ratios for dissolved vanillyl phenols were found to be high (up to 3.6), indicating the presence of highly oxidized lignin. Differences between DOM released from the ALD vs. the undisturbed watershed suggest that these shallow detachment slides have significantly impacted the quality of Arctic DOM. Although material released from the disturbed catchment was found to be highly oxidized, DOM in the lake into which this catchment drained had chemical characteristics indicating high contributions from

  4. Fractionation of rare earth elements in the Mississippi River estuary and river sediments

    NASA Astrophysics Data System (ADS)

    Adebayo, S. B.; Johannesson, K. H.

    2017-12-01

    This study presents the first set of data on the fractionation of rare earth elements (REE) in the mixing zone between the Mississippi River and the Gulf of Mexico, as well as the fractionation of REE in the operationally defined fractions of Mississippi River sediments. This subject is particularly important because the Mississippi river is one of the world's major rivers, and contributes a substantial amount of water and sediment to the ocean. Hence, it is a major source of trace elements to the oceans. The geochemistry of the REE in natural systems is principally important because of their unique chemical properties, which prompt their application as tracers of mass transportation in modern and paleo-ocean environments. Another important consideration is the growth in the demand and utilization of REE in the green energy and technology industries, which has the potential to bring about a change in the background levels of these trace elements in the environment. The results of this study show a heavy REE enrichment of both the Mississippi River water and the more saline waters of the mixing zone. Our data demonstrate that coagulation and removal of REE in the low salinity region of the estuary is more pronounced among the Light REE ( 35% for Nd) compared to the Heavy REE. Remarkably, our data also indicate that REE removal in the Mississippi River estuary is significantly less than that observed in other estuaries, including the Amazon River system. We propose that the high pH/alkalinity of the Mississippi River is responsible for the greater stability of REE in the Mississippi River estuary. The results of sequential extraction of river sediments reveal different Sm/Nd ratios for the various fractions, which we submit implies different 143Nd/144Nd ratios of the labile fractions of the sediments. The possible impact of such hypothesized different Nd isotope signatures of labile fractions of the river sediments on Gulf of Mexico seawater is under investigation.

  5. Temperature sensitivity (Q10), and dynamics of soil organic matter (SOM) decomposition in permafrost soils with different carbon quality and under experimental warming. R. Bracho1, E.A.G Schuur1, E. Pegoraro1, K.G. Crummer1, S. Natali2, J. Zhou, Y Luo3, J. L. Wu3, M. Tiedje4, K. Konstantinidis5 1Department of Biology, University of Florida, Gainesville, FL. 2Woods Hole Research Center, Falmouth, MA. 3Institute for Environmental Genomics and Department of Botany and Microbiology, University of Oklahoma, Norman, OK, 4Center for Microbial Ecology, Michigan State University, East Lansing, MI; 5Center for Bioinformatics and Computational Genomics and School of Biology, Georgia Institute of Technology, Atlanta, GA

    NASA Astrophysics Data System (ADS)

    Bracho, R. G.; Schuur, E. A.; Pegoraro, E.; Crummer, K. G.; Natali, S.; Zhou, J.; Wu, L.; Luo, Y.; Tiedje, J. M.; Konstantinidis, K.

    2013-12-01

    Permafrost soils contain approximately1700 Pg of carbon (C), twice the amount of C in the atmosphere. Temperatures in higher latitudes are increasing, inducing permafrost thaw and subsequent microbial decomposition of previously frozen C. This process is one of the most likely positive feedbacks to climate change. Understanding the temperature sensitivity (Q10) and dynamics of SOM decomposition under warming is essential to predict the future state of the earth - climate system. Alaskan tundra soils were exposed to two winter warming (WW) seasons in the field, which warmed the soils by 4°C to 40 cm depth. Soils were obtained from three depths (0 - 15, 15 - 25 and 45 - 55 cm) and differed in initial amounts of labile and recalcitrant C. Soils were incubated in the lab under aerobic conditions, at 15 and 25°C over 365 days. Q10 was estimated at 14, 100 & 280 days of incubation (DOI); C fluxes were measured periodically and dynamics of SOM decomposition (C pool sizes and decay rates) were estimated by fitting a two pool C model to cumulative respired C (Ccum, mgC/ginitialC). After two WW seasons, initial C content tended to decrease through the soil profile and C:N ratio was significantly decreased in the top 15 cm. After one year of incubation, Ccum was twice as high at 25°C as at 15°C and significantly decreased with depth. No significant WW field treatment was detected, although Ccum tended to be lower in warmed soils. Labile C accounted for up to 5% of initial soil C content in the top 15 cm and decreased with depth. Soils exposed to WW had smaller labile C pools, and higher labile C decay rates in the top 25 cm. Q10 significantly decreased with time and depth as labile pool decreased, especially for WW. This decrease with time indicates a lower temperature sensitivity of the most recalcitrant C pool. The deepest WW soil layer, where warming was more pronounced, had significantly lower Q10 compared to control soils at the same depth. After two seasons, the

  6. Biotic and abiotic controls on diurnal fluctuations in labile soil phosphorus of a wet tropical forest.

    PubMed

    Vandecar, Karen L; Lawrence, Deborah; Wood, Tana; Oberbauer, Steven F; Das, Rishiraj; Tully, Katherine; Schwendenmann, Luitgard

    2009-09-01

    The productivity of many tropical wet forests is generally limited by bioavailable phosphorus (P). Microbial activity is a key regulator of P availability in that it determines both the supply of P through organic matter decomposition and the depletion of bioavailable P through microbial uptake. Both microbial uptake and mineralization occur rapidly, and their net effect on P availability varies with soil moisture, temperature, and soil organic matter quantity and quality. Exploring the mechanisms driving P availability at fine temporal scales can provide insight into the coupling of carbon, water, and nutrient cycles, and ultimately, the response of tropical forests to climate change. Despite the recognized importance of P cycling to the dynamics of wet tropical forests and their potential sensitivity to short-term fluctuations in bioavailable P, the diurnal pattern of P remains poorly understood. This study quantifies diurnal fluctuations in labile soil P and evaluates the importance of biotic and abiotic factors in driving these patterns. To this end, measurements of labile P were made every other hour in a Costa Rican wet tropical forest oxisol. Spatial and temporal variation in Bray-extractable P were investigated in relation to ecosystem carbon flux, soil CO2 efflux, soil moisture, soil temperature, solar radiation, and sap-flow velocity. Spatially averaged bi-hourly (every two hours) labile P ranged from 0.88 to 2.48 microg/g across days. The amplitude in labile P throughout the day was 0.61-0.82 microg/g (41-54% of mean P concentrations) and was characterized by a bimodal pattern with a decrease at midday. Labile P increased with soil CO2 efflux and soil temperature and declined with increasing sap flow and solar radiation. Together, soil CO2 efflux, soil temperature, and sap flow explained 86% of variation in labile P.

  7. Protective Effect of Active Immunization with Purified Escherichia coli Heat-Labile Enterotoxin in Rats

    PubMed Central

    Klipstein, Frederick A.; Engert, Richard F.

    1979-01-01

    The protective effect of active immunization by different routes with a purified preparation of the polymyxin-release form of Escherichia coli heat-labile toxin was evaluated in rats. Immunized animals were challenged by placing toxin into ligated ileal loops at dosages which produced either 50% or the maximum secretory response in unimmunized rats. Immunization exclusively by the parenteral route yielded significant protection. Rats were also protected when parenteral priming was followed by boosting given either directly into the duodenum or perorally 2 h after intragastric cimetidine, but not when the peroral boosts were given with bicarbonate. Immunization administered entirely by the peroral route with cimetidine yielded protection but only when the immunizing dosage was fivefold greater than that found effective in the parenteral-peroral approach. Rats immunized exclusively by the parenteral route and those boosted perorally with cimetidine were also tested, and found to be protected, against challenge with viable organisms of strains that produce either heat-labile toxin alone or both heat-labile and heat-stable toxin, but they were not protected against a strain which produces just heat-stable toxin. Geometric mean serum antibody titers were increased by 16-fold or more over control values in those groups of rats in which protection was achieved, with the exception of those immunized exclusively by the peroral route. These observations demonstrate that (i) active immunization with purified E. coli heat-labile toxin results in significant protection against both this toxin as well as viable organisms which produce it, but not against viable strains which produce heat-stable toxin only, and (ii) concomitant ablation of gastric secretion by the use of cimetidine renders the peroral route of immunization effective. They suggest that prophylactic immunization against diarrheal disease caused by heat-labile toxin-producing strains of E. coli may be feasible in

  8. Fractionation and potential toxic risk of metals from superficial sediment in Itaipu Lake--boundary between Brazil and Paraguay.

    PubMed

    Kalwa, Miguel; Quináia, Sueli Pércio; Pletsch, Adelmo L; Techy, Laura; Felsner, Maria Lurdes

    2013-01-01

    The objective of this study was to evaluate fractions of metals (labile and pseudo-total) extracted from sediment samples collected in Itaipu Lake (boundary between Brazil and Paraguay) and to assess the dynamics and mobility of these fractions by identifying the same bioavailability and ecological risk to metals in the aquatic environment. The concentrations of metal ions were determined by flame atomic absorption spectrometry. There was a correlation between the metal ions, both in the labile and the pseudo-total, with regard to particle size. To assess metals concentrations in sediment, numerical sediment-quality guidelines were applied. The concentrations of aluminum, cadmium, iron, manganese, lead, and zinc in all sediment samples are lower than the proposed probable effects level (PEL), thus possibly indicating that there are no harmful effects from these metals. In contrast, concentrations of copper, chromium, and nickel exceeded the PEL in some samples, thus indicating that these stations are at potential risk. The level of contamination in sediments of Itaipu Lake for all metals was evaluated using contamination factor, degree of contamination, and sum-of-metals toxic unit.

  9. Sensitivity of Arctic Permafrost Carbon in the Mackenzie River Basin: A substrate addition and incubation experiment

    NASA Astrophysics Data System (ADS)

    Hedgpeth, A.; Beilman, D.; Crow, S. E.

    2014-12-01

    Arctic soil organic matter (SOM) mineralization processes are fundamental to the functioning of high latitude soils in relation to nutrients, stability, and feedbacks to atmospheric CO2 and climate. The arctic permafrost zone covers 25% of the northern hemisphere and contains 1672Pg of soil carbon (C). 88% of this C currently resides in frozen soils that are vulnerable to environmental change. For instance, arctic growing seasons may be lengthened, resulting in an increase in plant productivity and rate of below ground labile C inputs as root exudates. Understanding controls on Arctic SOM dynamics requires recognition that labile C inputs have the potential to significantly affect mineralization of previously stable SOM, also known as 'priming effects'. We conducted a substrate addition incubation experiment to quantify and compare respiration in highly organic (42-48 %C) permafrost soils along a north-south transect in western Canada. Near surface soils (10-20 cm) were collected from permafrost peatland sites in the Mackenzie River Basin from 69.2-62.6°N. The surface soils are fairly young (Δ14C values > -140.0) and can be assumed to contain relatively reactive soil carbon. To assess whether addition of labile substrate alters SOM decomposition dynamics, 4.77-11.75 g of permafrost soil were spiked with 0.5 mg D-glucose g-1 soil and incubated at 5°C. A mass balance approach was used to determin substrate-induced respiration and preliminary results suggest a potential for positive priming in these C-rich soils. Baseline respiration rates from the three sites were similar (0.067-0.263 mg CO2 g-1 soil C) yet show some site-specific trends. The rate at which added substrate was utilized within these soils suggests that other factors besides temperature and soil C content are controlling substrate consumption and its effect on SOM decomposition. Microbial activity can be stimulated by substrate addition to such an extent that SOM turnover is enhanced, suggesting that

  10. Volatile element depletion and K-39/K-41 fractionation in lunar soils

    NASA Technical Reports Server (NTRS)

    Church, S. E.; Tilton, G. R.; Wright, J. E.; Lee-Hu, C.-N.

    1976-01-01

    Evidence for selective loss and isotopic fractionation (in the case of K) of volatile elements during formation of agglutinates by micrometeoritic bombardment of lunar soils is presented. Concentrations and isotopic compositions of volatile elements (K, Rb, Pb) and nonvolatile elements (U, Th, Ba, Sr, rare earths) in separates taken from soils 14163, 14259, 15041, 68501, and 71500 are examined. Rayleigh fractionation calculations applied to K-39/K-41 isotopic data indicate ten-fold recycling of bulk soil, to account for observed isotopic anomalies. The lunar soil fines fraction seems to be a site of deposition for volatile or labile Pb produced during agglutination. Local fines (below 75 microns) are viewed as representative of the parent material for agglutinates formed in situ by micrometeoritic impact. Magnetic separation of agglutinates from soil 68501 revealed a bimodal population, with one class comprising welded blocky magnetic glasses.

  11. Linking aboveground net primary productivity to soil carbon and dissolved organic carbon in complex terrain

    NASA Astrophysics Data System (ADS)

    Peterson, Fox S.; Lajtha, Kate J.

    2013-07-01

    Factors influencing soil organic matter (SOM) stabilization and dissolved organic carbon (DOC) content in complex terrain, where vegetation, climate, and topography vary over the scale of a few meters, are not well understood. We examined the spatial correlations of lidar and geographic information system-derived landscape topography, empirically measured soil characteristics, and current and historical vegetation composition and structure versus SOM fractions and DOC pools and leaching on a small catchment (WS1) in the H.J. Andrews Experimental Forest, located in the western Cascades Range of Oregon, USA. We predicted that aboveground net primary productivity (ANPP), litter fall, and nitrogen mineralization would be positively correlated with SOM, DOC, and carbon (C) content of the soil based on the principle that increased C inputs cause C stores in and losses from in the soil. We expected that in tandem, certain microtopographical and microclimatic characteristics might be associated with elevated C inputs and correspondingly, soil C stores and losses. We confirmed that on this site, positive relationships exist between ANPP, C inputs (litter fall), and losses (exportable DOC), but we did not find that these relationships between ANPP, inputs, and exports were translated to SOM stores (mg C/g soil), C content of the soil (% C/g soil), or DOC pools (determined with salt and water extractions). We suggest that the biogeochemical processes controlling C storage and lability in soil may relate to longer-term variability in aboveground inputs that result from a heterogeneous and evolving forest stand.

  12. The effects of burning and grazing on soil carbon dynamics in managed Peruvian tropical montane grasslands

    NASA Astrophysics Data System (ADS)

    Oliver, Viktoria; Oliveras, Imma; Kala, Jose; Lever, Rebecca; Arn Teh, Yit

    2017-12-01

    Montane tropical soils are a large carbon (C) reservoir, acting as both a source and a sink of CO2. Enhanced CO2 emissions originate, in large part, from the decomposition and losses of soil organic matter (SOM) following anthropogenic disturbances. Therefore, quantitative knowledge of the stabilization and decomposition of SOM is necessary in order to understand, assess and predict the impact of land management in the tropics. In particular, labile SOM is an early and sensitive indicator of how SOM responds to changes in land use and management practices, which could have major implications for long-term carbon storage and rising atmospheric CO2 concentrations. The aim of this study was to investigate the impacts of grazing and fire history on soil C dynamics in the Peruvian montane grasslands, an understudied ecosystem, which covers approximately a quarter of the land area in Peru. A density fractionation method was used to quantify the labile and stable organic matter pools, along with soil CO2 flux and decomposition measurements. Grazing and burning together significantly increased soil CO2 fluxes and decomposition rates and reduced temperature as a driver. Although there was no significant effect of land use on total soil C stocks, the combination of burning and grazing decreased the proportion of C in the free light fraction (LF), especially at the lower depths (10-20 and 20-30 cm). In the control soils, 20 % of the material recovered was in the free LF, which contained 30 % of the soil C content. In comparison, the burnt-grazed soil had the smallest recovery of the free LF (10 %) and a significantly lower C content (14 %). The burnt soils had a much higher proportion of C in the occluded LF (12 %) compared to the not-burnt soils (7 %) and there was no significant difference among the treatments in the heavy fraction (F) ( ˜ 70 %). The synergistic effect of burning and grazing caused changes to the soil C dynamics. CO2 fluxes were increased and the dominant

  13. Plant regulation of greenhouse gas emissions and carbon lability in a Neotropical peatland

    NASA Astrophysics Data System (ADS)

    Girkin, Nicholas; Vane, Christopher; Turner, Benjamin; Ostle, Nicholas; Sjogersten, Sofie

    2017-04-01

    Tropical peatlands are under significant threat from land use changes but there remains a significant knowledge gap regarding the influences of contrasting plant types on greenhouse gas emissions and belowground carbon dynamics. We investigated differences in surface CO2 and CH4 fluxes and differences in soil organic carbon chemistry under contrasting surface vegetation types, a palm (Raphia taedigera) and a broadleaved evergreen tree (Campnosperma panamensis), in a Neotropical peatland. CO2 and CH4 production differed significantly between species, with higher fluxes measured under R. taedigera. There were significant differences in peat carbon properties under each species as revealed by Rock-Eval pyrolysis. Peat from under each species showed contrasting trends in degradation inside and outside the rooting zone, and strong differences in the presence of the most labile fractions of carbon. These results highlight the strong impacts that surface vegetation can have on surface gas emissions as well as the influences exerted on peat carbon chemistry within a tropical forested peatland, with implications for our understanding of changes in land use type across the tropics.

  14. Comparison of Soil Organic Matter Dynamics at Four Temperate Deciduous Forests with Physical Fractionation and Radiocarbon Measurements

    NASA Astrophysics Data System (ADS)

    McFarlane, K. J.; Torn, M. S.; Hanson, P. J.; Swanston, C.; Guilderson, T. P.; Porras, R. C.

    2009-12-01

    Forest soils represent a significant pool for C sequestration and storage, but the factors controlling soil C cycling are not well constrained. We used density fractionation and radiocarbon measurements to assess differences in soil C cycling amongst four eastern deciduous forests that are part of the AmeriFlux Network and vary in climate, soil type, parent material, and soil ecology. We collected mineral soil from 0-5 cm and 5-15 cm depth at Harvard Forest (HAF) in central Massachusetts, Bartlett Experimental Forest (BEF) in New Hampshire, the University of Michigan Biological Station (UMBS), and Baskett Wildlife Recreation and Education Area in the Missouri Ozarks (MOZ). Deeper soil samples have been collected (to 75 cm in some cases) for future analysis. We fractionated soil samples by density into free light (unprotected SOM), occluded light (physically protected SOM), and dense (mineral-protected) fractions using sodium polytungstate (1.65 g ml-1), measured C concentration and radiocarbon in bulk soil and fractions, and used a three-pool steady-state model to determine radiocarbon-based turnover times for fractions. The northeastern sites, HAF and BEF, had higher bulk soil C (65 and 40 g C kg soil-1, respectively) than did MOZ or UMBS (20 and 10 g C kg soil-1). Bulk soil radiocarbon values (Δ14C) decreased with depth and were lower at northeastern sites than Midwestern sites (36, 8, 113, and 65 ‰ for 0-5 cm at HF, BEF, MOZ, and UMBS, respectively). Soil C distribution amongst fractions was similar at HAF, BEF, and MOZ with the unprotected free light fraction containing about 40% of bulk soil C for 0-5 cm and 20% of bulk soil C for 5-15 cm. At these three sites, the physically protected occluded light fraction contained about 10% of bulk soil C, with the mineral-protected dense fraction containing the remaining 50-70%. In contrast, UMBS, the site with the sandiest soil, had a greater portion of bulk soil C recovered in the unprotected free light fraction and

  15. Multiple indices of soil nitrogen status and temperature regulate microbial C allocation to CO2, substrate choices, and contributions to SOM

    NASA Astrophysics Data System (ADS)

    Billings, S. A.; Ziegler, S. E.

    2012-12-01

    The response of microbial resource demand to many environmental variables, including temperature and natural organic and inorganic N variability, remains poorly understood. Furthermore, we do not understand how these variables can influence CO2 release vs. C retention in cell walls, which as microbial necromass can generate long-lived soil organic matter (SOM). We explore microbial resource demand and C retention vs. release in one temperate forest and two boreal forests along a climate gradient. We characterized SOM C:N and inorganic N, extracellular enzyme activity (E), and phospholipid fatty acid (PLFA) concentration and δ13C. Experimental warming permitted us to assess how interactions between soil N status and warming influence resource demand and C flows through microbes in the two boreal soils. For all soils, we used δ13C of respired CO2 and δ13CPLFA to generate indices of C allocation to biomass vs. to respiratory costs (Δ), useful for cross-site comparisons. Decreasing values of Δ indicate a greater proportion of 13C-enriched C allocated to respiration relative to PLFA-C; changes in Δ with warming or N status thus imply that these variables can influence the physiological mechanisms determining the fate of microbial C after it is imported into the cell. We thus were able to assess the influence of soil N status and warming on substrate decay via E, the fate of microbial C from diverse substrates via Δ, and one index of microbial composition relevant to SOM formation [PLFA]. In all soils, E often varied with N status in ways predicted by stoichiometric theory. For example, the ratio of exo-enzymes associated with labile C decay to those linked to organic N decay (EC:N) increased with inorganic N, and EC:N declined as substrate C:N increased. In contrast to measures of decay, all soils exhibited distinct responses of microbial composition and C allocation to N status and warming. In the temperate forest soils, Gram+ bacteria responded positively to

  16. Impact of temperamental mood lability on depressive mixed state.

    PubMed

    Benazzi, Franco

    2006-01-01

    Cyclothymic temperament (which includes mood lability) is common in bipolar II disorder (BP-II). Depressive mixed state (DMX), a major depressive episode (MDE) mixed with intra-episode hypomanic symptoms (3 or more, according to a recently validated definition), was found to be common in BP-II and not uncommon in major depressive disorder (MDD). The study aim was to find the impact of temperamental mood lability (TML) on DMX. Consecutive 148 BP-II and 117 MDD outpatients presenting for MDE treatment were interviewed by the Structured Clinical Interview for DSM-IV as modified by Benazzi and Akiskal to reduce the false negative BP-II. Intra-MDE hypomanic symptoms were systematically assessed. Kraepelin, Angst, and Akiskal's definitions of temperamental mood lability (i.e., frequent up and down fluctuations of mood between major mood episodes since young age) were followed. DMX was present in 61.5%, TML in 52.8%. In the DMX sample, TML was present in 57.6%, and in the non-DMX sample TML was present in 45.0% (OR = 1.6, 95% CI = 1.0-2.7). In the DMX sample, independent predictors of DMX with TML were BP-II and young age at onset. Intra-MDE hypomanic symptoms, and MDE, melancholic and atypical symptoms were not significantly different between DMX patients with TML and DMX patients without TML, apart from more temperamental interpersonal sensitivity in DMX patients with TML (OR = 2.0, 95% CI = 1.0-3.8). DMX patients with TML had a younger onset age, suggesting that TML may facilitate the onset of DMX or that it may be a precursor of DMX. The association of BP-II with DMX, TML, and interpersonal sensitivity can make the course of BP-II more unstable and its treatment more complex.

  17. Effects of somatostatin analog SOM230 on cell proliferation, apoptosis, and catecholamine levels in cultured pheochromocytoma cells.

    PubMed

    Pasquali, Daniela; Rossi, Valentina; Conzo, Giovanni; Pannone, Giuseppe; Bufo, Pantaleo; De Bellis, Annamaria; Renzullo, Andrea; Bellastella, Giuseppe; Colao, Annamaria; Vallone, Gianfranco; Bellastella, Antonio; Sinisi, Antonio A

    2008-06-01

    Surgery is the primary therapy for pheochromocytoma (PHEO), a catecholamine-producing tumor. Benign and malignant PHEO could develop recurrences, and the intraoperative risk of recurrent PHEO is an important unresolved issue. Non-surgical treatments of PHEO recurrence would therefore better prepare patients for reintervention as well as provide them with palliative management. We investigated the effects of the new somatostatin analog (pasireotide) SOM230 versus octreotide (OCT) in primary PHEO cell cultures (Pheo-c). Pheo-c from six benign surgical samples were set up and characterized by immunocytochemistry. Real-time PCR, using both PHEO tissues and Pheo-c, showed different levels of somatostatin receptor(1-5) mRNA expression. Cells treated with various doses of OCT or SOM230 for 48 and 72 h were analyzed to assess their effects on cell proliferation and apoptosis and catecholamine levels. Even if reduction of cell viability was observed in Pheo-c treated for 48 h with either OCT or SOM230 and this effect increased after 72 h, a more significant inhibition of cell growth as well as a significantly higher induction of apoptosis was seen in Pheo-c treated with SOM230 versus OCT. In particular, apoptosis in Pheo-c was detected after 48 h and was associated with increased expression and activation of caspase-3 and cleaved poly(ADP-ribose) polymerase. OCT 10(-6) M and SOM230 10(-7) M significantly reduced catecholamine levels. Our results indicate that while both OCT and SOM230 modulate cell growth and apoptosis and catecholamine levels in Pheo-c through specific receptors, SOM230 is more effective. This improves our knowledge on the mechanism of SOM230 action in PHEO and supports a possible therapeutic use in benign PHEO recurrence.

  18. [SOMS-2: translation into portuguese of the screening for Somatoform Disorders].

    PubMed

    Fabião, Cristina; Costa E Silva, Carolina; Fleming, Manuela; Barbosa, António

    2008-01-01

    The diagnosis of Somatization Disorder (SD) requires the presence of somatic medically unexplained symptoms (MUS) which must be assessed so that organic diseases may be excluded. SOMS-2 is a self-report measure for SD that assesses medically unexplained symptoms by requiring participants to answer affirmatively and qualify any of the complaints as MUS, only if they have obtained from his doctor the opinion that the said complaint is not due to an organic disease. According to the authors, original SOMS-2 has a good internal consistency with Cronbach's a = .87 and a good correlation between selfratings and interview (r = .75). After obtaining the author's permission, translation from and into English has been made by experienced translators. The resulting questionnaire has been used on a small group of patients. Afterwards the items in which there were difficulties in understanding during the pretest were identified and experienced practitioners were asked for suggestions. The resulting version was answered by 123 primary health care patients (sample I). After some modifications of the SOMS-2, another group of 190 primary health care patients answered the questionnaire (sample II). Most patients, in the first sample, found it difficult to understand that, in order to answer affirmatively it was necessary to answer three questions: 1) is the symptom present? 2) has your doctor found no clear causes for the symptom? 3) does the symptom affect your well-being? The difficulties in understanding items 21 and 45 (pre-test) were confirmed. Items 11, 28 and 38 were more easily understood when worded differently. In sample I, less than 5% of positive answers were given to items 20, 21, 23, 40, 43, 45, and 51. Probably because of the low education level of the Portuguese population which this sample reflects, difficulties in carrying out the instructions given at the beginning made it advisable to modify the SOMS-2, so that the three implicit questions in each question of the

  19. Use of radiocarbon and spectroscopic analyses to characterise soil organic matter pools isolated using different fractionation techniques.

    NASA Astrophysics Data System (ADS)

    Miller, Gemma; Cloy, Joanna; Garnett, Mark; Sohi, Saran; Rees, Robert; Griffiths, Bryan

    2015-04-01

    Experimental division of soil organic matter (SOM) into functional pools has the potential to improve soil C modelling. Soil physical fractionation techniques seek to quantify these pools, however the fractions isolated vary in number, size, ecological role and composition. The use of different techniques to quantify soil C fractions in different studies presents a question - do similar fractions isolated by different methods fit the same conceptual definition? This study examined a sandy loam from the south-west of Scotland, sampled in summer, which had been under grassland management for at least 20 years. We compared average 14C ages of SOM fractions isolated using three published and frequently applied physical fractionation methods (1) a density separation technique isolating three fractions - free light (FLF) < 1.8 cm 3, intra-aggregate light (IALF) < 1.8 cm-3 after aggregate disruption, and organo-mineral (O-min) > 1.8 g cm 3 (Sohi et al, 2001); (2) a combined physical and chemical separation isolating five fractions: sand and aggregates (S+A) > 63 µm and > 1.8 g cm-3, particulate organic matter (POM) > 63 µm and < 1.8 g cm 3, silt and clay (s+c) < 63 but > 45 µm, residual organic carbon (rSOC) the residue left after s+c is oxidised with NaOCl, and dissolved organic carbon (DOC) < 45 µm (Zimmermann et al, 2007); and (3) a hot water extraction method isolating two fractions: water soluble C (WSC) at 20 °C and hot water extractable C (HWEC) at 80 °C (Ghani et al, 2003). The fractions from Method 1 had the most distinct average 14C ages with O-min, FLF and IALF assessed as 206, 1965 and 6172 years before present (BP) respectively. The fractions from Method 2 fell into two age groups, < ~1000 years BP for s+c, rSOC and S+A and > 4000 years BP for DOC and POM. Both Method 3 fractions were dominated by modern C. The average 14C ages of FLF, IALF, DOC and POM were surprisingly higher than the mineral bound fractions, although they made up a relatively small

  20. Measurement of labile copper in wine by medium exchange stripping potentiometry utilising screen printed carbon electrodes.

    PubMed

    Clark, Andrew C; Kontoudakis, Nikolaos; Barril, Celia; Schmidtke, Leigh M; Scollary, Geoffrey R

    2016-07-01

    The presence of copper in wine is known to impact the reductive, oxidative and colloidal stability of wine, and techniques enabling measurement of different forms of copper in wine are of particular interest in understanding these spoilage processes. Electrochemical stripping techniques developed to date require significant pretreatment of wine, potentially disturbing the copper binding equilibria. A thin mercury film on a screen printed carbon electrode was utilised in a flow system for the direct analysis of labile copper in red and white wine by constant current stripping potentiometry with medium exchange. Under the optimised conditions, including an enrichment time of 500s and constant current of 1.0μA, the response range was linear from 0.015 to 0.200mg/L. The analysis of 52 red and white wines showed that this technique generally provided lower labile copper concentrations than reported for batch measurement by related techniques. Studies in a model system and in finished wines showed that the copper sulfide was not measured as labile copper, and that loss of hydrogen sulfide via volatilisation induced an increase in labile copper within the model wine system. Copyright © 2016 Elsevier B.V. All rights reserved.

  1. Simultaneous quantification of soil phosphorus labile pool and desorption kinetics using DGTs and 3D-DIFS

    NASA Astrophysics Data System (ADS)

    Menezes-Blackburn, Daniel; Sun, Jiahui; Lehto, Niklas; Zhang, Hao; Stutter, Marc; Giles, Courtney D.; Darch, Tegan; George, Timothy S.; Shand, Charles; Lumsdon, David; Blackwell, Martin; Wearing, Catherine; Cooper, Patricia; Wendler, Renate; Brown, Lawrie; Haygarth, Philip M.

    2017-04-01

    The phosphorus (P) labile pool and desorption kinetics were simultaneously evaluated in ten representative UK soils using the technique of Diffusive gradients in thin films (DGT). The DGT-induced fluxes in soil and sediments model (DIFS) was fitted to the time series of DGT deployment (1h to 240h). The desorbable P concentration (labile P) was obtained by multiplying the fitted Kd by the soil solution P concentration obtained using Diffusive Equilibration in Thin Films (DET) devices. The labile P was then compared to several soil P extracts including Olsen P, Resin P, FeO-P and water extractable P, in order to assess if these analytical procedures can be used to represent the labile P across different soils. The Olsen P, commonly used as a representation of the soil labile P pool, overestimated the desorbable P concentration by a seven fold factor. The use of this approach for the quantification of soil P desorption kinetics parameters was somewhat unprecise, showing a wide range of equally valid solutions for the response of the system P equilibration time (Tc). Additionally, the performance of different DIFS model versions (1D, 2D and 3D) was compared. Although these models had a good fit to experimental DGT time series data, the fitted parameters showed a poor agreement between different model versions. The limitations of the DIFS model family are associated with the assumptions taken in the modelling approach and the 3D version is here considered to be the most precise among them.

  2. Pyrolysis compound specific isotopic analysis (δ13C and δD Py-CSIA) of soil organic matter size fractions under four vegetation covers.

    NASA Astrophysics Data System (ADS)

    Jiménez-Morillo, Nicasio T.; González-Vila, Francisco J.; Almendros, Gonzalo; De la Rosa, José M.; González-Pérez, José A.

    2015-04-01

    A chemical characterization of soil organic matter (SOM) under different ground cover from a Mediterranean climate (Doñana National Park, Andalusia, Spain) is approached using bulk δ15N, δ13C, δ18O and δD isotopic analysis (C/TC-IRMS) and δ13C and δD pyrolysis compound specific isotopic analysis (Py-CSIA: Py-GC-C/TC-IRMS). Soil samples were collected in sandy soils, Arenosols (WRB 2006) from the Doñana National Park (SW Spain) under different vegetation cover: cork oak (Quercus suber, QS), eagle fern (Pteridium aquilinum, PA), pine (Pinus pinea, PP) and rockrose (Halimium halimifolium, HH). Two size fractions; coarse (C: 1-2 mm) and fine (F: <0.05 mm) were studied from each soil. A complete conventional analytical pyrolysis (Py-GC/MS) of these samples have been studied in detail (Jiménez-Morillo et al., 2015). Bulk isotopic analysis of stable light elements (δ15N, δ13C, δ18O and δD) revealed particular isotopic signatures showing differences related with the main vegetation cover and the different soil size fraction. All samples had a carbon isotopic signature between -26 and -29 ‰, which indicated that the organic matter in the two fractions of each soil sample derived from C3-type plants. The bulk δD isotopic signature in whole soil sample indicate a lower deuterium fractionation occurs in SOM under arboreal than under no-arboreal vegetation, this can be caused by the occurrence of a higher water evaporation rate under bush vegetation and/or to differences due to leaf morphology as previously described (Leaney et al., 1985). A δ15N vs. δ18O chart may provide some clues about N origin in the soil and particularly about the original source of nitrates (Kendall et al., 1996). In in all sample and size fractions our values are in the chart area corresponding to NO3 in precipitation, with lighter δ18O (c. 20 ‰) values compatible with fertilizers may be from adjacent crops. In addition we were able to assign δ13C and δD values for a number of

  3. Development and Lability in the Parent-Child Relationship During Adolescence: Associations With Pubertal Timing and Tempo

    PubMed Central

    Marceau, Kristine; Ram, Nilam; Susman, Elizabeth

    2014-01-01

    Adolescents' and parents' reactions to pubertal development are hypothesized to contribute to changes in family dynamics. Using 7-year longitudinal data from the NICHD-SECCYD (488 boys, 475 girls) we examined relations between pubertal development (timing, tempo) and trajectories (developmental change and year-to-year lability) of parent-child conflict and closeness from age 8.5 to 15.5 years. Changes were mostly characterized by year-to-year fluctuations – lability. Parent-child conflict increased and closeness decreased some with age. Pubertal timing and tempo were more consistently associated with lability in parent-child relationships than with long-term trends, although faster tempo was associated with steeper decreases in parent-child closeness. Findings provide a platform for examining how puberty contributes to both long-term and transient changes in adolescents' relationships and adjustment. PMID:26321856

  4. Sources of organic ice nucleating particles in soils

    NASA Astrophysics Data System (ADS)

    Hill, Tom C. J.; DeMott, Paul J.; Tobo, Yutaka; Fröhlich-Nowoisky, Janine; Moffett, Bruce F.; Franc, Gary D.; Kreidenweis, Sonia M.

    2016-06-01

    Soil organic matter (SOM) may be a significant source of atmospheric ice nucleating particles (INPs), especially of those active > -15 °C. However, due to both a lack of investigations and the complexity of the SOM itself, the identities of these INPs remain unknown. To more comprehensively characterize organic INPs we tested locally representative soils in Wyoming and Colorado for total organic INPs, INPs in the heat-labile fraction, ice nucleating (IN) bacteria, IN fungi, IN fulvic and humic acids, IN plant tissue, and ice nucleation by monolayers of aliphatic alcohols. All soils contained ≈ 106 to ≈ 5 × 107 INPs g-1 dry soil active at -10 °C. Removal of SOM with H2O2 removed ≥ 99 % of INPs active > -18 °C (the limit of testing), while heating of soil suspensions to 105 °C showed that labile INPs increasingly predominated > -12 °C and comprised ≥ 90 % of INPs active > -9 °C. Papain protease, which inactivates IN proteins produced by the fungus Mortierella alpina, common in the region's soils, lowered INPs active at ≥ -11 °C by ≥ 75 % in two arable soils and in sagebrush shrubland soil. By contrast, lysozyme, which digests bacterial cell walls, only reduced INPs active at ≥ -7.5 or ≥ -6 °C, depending on the soil. The known IN bacteria were not detected in any soil, using PCR for the ina gene that codes for the active protein. We directly isolated and photographed two INPs from soil, using repeated cycles of freeze testing and subdivision of droplets of dilute soil suspensions; they were complex and apparently organic entities. Ice nucleation activity was not affected by digestion of Proteinase K-susceptible proteins or the removal of entities composed of fulvic and humic acids, sterols, or aliphatic alcohol monolayers. Organic INPs active colder than -10 to -12 °C were resistant to all investigations other than heat, oxidation with H2O2, and, for some, digestion with papain. They may originate from decomposing plant material, microbial

  5. Data splitting for artificial neural networks using SOM-based stratified sampling.

    PubMed

    May, R J; Maier, H R; Dandy, G C

    2010-03-01

    Data splitting is an important consideration during artificial neural network (ANN) development where hold-out cross-validation is commonly employed to ensure generalization. Even for a moderate sample size, the sampling methodology used for data splitting can have a significant effect on the quality of the subsets used for training, testing and validating an ANN. Poor data splitting can result in inaccurate and highly variable model performance; however, the choice of sampling methodology is rarely given due consideration by ANN modellers. Increased confidence in the sampling is of paramount importance, since the hold-out sampling is generally performed only once during ANN development. This paper considers the variability in the quality of subsets that are obtained using different data splitting approaches. A novel approach to stratified sampling, based on Neyman sampling of the self-organizing map (SOM), is developed, with several guidelines identified for setting the SOM size and sample allocation in order to minimize the bias and variance in the datasets. Using an example ANN function approximation task, the SOM-based approach is evaluated in comparison to random sampling, DUPLEX, systematic stratified sampling, and trial-and-error sampling to minimize the statistical differences between data sets. Of these approaches, DUPLEX is found to provide benchmark performance with good model performance, with no variability. The results show that the SOM-based approach also reliably generates high-quality samples and can therefore be used with greater confidence than other approaches, especially in the case of non-uniform datasets, with the benefit of scalability to perform data splitting on large datasets. Copyright 2009 Elsevier Ltd. All rights reserved.

  6. What is the role played by organic matter fractions from different sieve-size particles in the development of soil water repellency? A case study using analytical pyrolysis.

    NASA Astrophysics Data System (ADS)

    Jiménez-Morillo, Nicasio T.; González-Pérez, José A.; González-Vila, Francisco J.; Zavala, Lorena M.; Jordán, Antonio; Jiménez-González, Marco A.

    2014-05-01

    1. INTRODUCTION It is known that soil water repellency (WR) is induced by organic substances covering the surface of minerals particles and aggregates or present as interstitial substances in the soil matrix. It has also been suggested that the persistence of WR is largely conditioned by specific chemical characteristics of soil organic matter (SOM). Most of these substances are abundant in ecosystems and are released into soils as exudates of roots, organic residues in decomposition, or secretions by fungi and other microorganisms. Soil free lipids correspond to a diverse collection of hydrophobic substances including complex substances as sterols, terpenes, polynuclear hydrocarbons, chlorophylls, fatty acids, waxes, and resins. Some of these organic substances, responsible of soil water repellency may be studied using analytical pyrolisis (de la Rosa et al., 2011; González-Pérez et al., 2011). This research aims to study the relation between soil WR and SOM quantity and quality, assessing the impact of organic fractions and its distribution in soil particles of different size on soil WR from sandy soils. 2. METHODS Soil samples were collected under selected species growing in sandy soils from the Doñana National Park (SW Spain), cork oak (Quercus suber, QS), eagle fern (Pteridium aquilinum, PA), pine (Pinus pinea, PP) and rockrose (Halimium halimifolium, HH). Soil WR and physical chemical characteristics including SOM content were assessed in fine earth soil samples (< 2mm) and in soil sieve fractions (1-2, 0.25-1, 0.05-0.25 and <0.05 mm). The composition of common hydrophobic substances present in SOM (n-alkane/alkene pairs and n-alkanoic acids) was assessed by analytical pyrolysis. Analytical pyrolysis techniques do not need a pre-treatment, is fast and easily reproducible 3. RESULTS The severity of soil WR (determined using the WDPT test) may be ordered according to the sequence QS>PA>PP>HH. A positive correlation was observed between WR from each sieve

  7. Sensitivity-enhanced detection of non-labile proton and carbon NMR spectra on water resonances.

    PubMed

    Novakovic, Mihajlo; Martinho, Ricardo P; Olsen, Gregory L; Lustig, Michael S; Frydman, Lucio

    2017-12-20

    Chemical exchange saturation transfer (CEST) experiments enhance the NMR signals of labile protons by continuously transferring these protons' saturation to an abundant solvent pool like water. The present study expands these principles by fusing into these experiments homonuclear isotropic mixing sequences, enabling the water-enhanced detection of non-exchangeable species. Further opportunities are opened by the addition of coupling-mediated heteronuclear polarization transfers, which then impose on the water resonance a saturation stemming from non-labile heteronuclear species like 13 C. To multiplex the ensuing experiments, these relayed approaches are combined with time-domain schemes involving multiple Ramsey-labeling experiments imparting the frequencies of the non-labile sites on the water resonance, via chemical exchange. 13 C and 1 H NMR spectra were detected in this fashion with about two-fold SNR amplification vis-à-vis conventionally detected spectroscopies. When combined with non-uniform sampling principles, this methodology thus becomes a sensitive alternative to detect non-exchangeable species in biomolecules. Still, multiple parameters including the scalar couplings and solvent exchange rates, will affect the efficiency and consequently the practicality of the overall experiment.

  8. The new and computationally efficient MIL-SOM algorithm: potential benefits for visualization and analysis of a large-scale high-dimensional clinically acquired geographic data.

    PubMed

    Oyana, Tonny J; Achenie, Luke E K; Heo, Joon

    2012-01-01

    The objective of this paper is to introduce an efficient algorithm, namely, the mathematically improved learning-self organizing map (MIL-SOM) algorithm, which speeds up the self-organizing map (SOM) training process. In the proposed MIL-SOM algorithm, the weights of Kohonen's SOM are based on the proportional-integral-derivative (PID) controller. Thus, in a typical SOM learning setting, this improvement translates to faster convergence. The basic idea is primarily motivated by the urgent need to develop algorithms with the competence to converge faster and more efficiently than conventional techniques. The MIL-SOM algorithm is tested on four training geographic datasets representing biomedical and disease informatics application domains. Experimental results show that the MIL-SOM algorithm provides a competitive, better updating procedure and performance, good robustness, and it runs faster than Kohonen's SOM.

  9. The New and Computationally Efficient MIL-SOM Algorithm: Potential Benefits for Visualization and Analysis of a Large-Scale High-Dimensional Clinically Acquired Geographic Data

    PubMed Central

    Oyana, Tonny J.; Achenie, Luke E. K.; Heo, Joon

    2012-01-01

    The objective of this paper is to introduce an efficient algorithm, namely, the mathematically improved learning-self organizing map (MIL-SOM) algorithm, which speeds up the self-organizing map (SOM) training process. In the proposed MIL-SOM algorithm, the weights of Kohonen's SOM are based on the proportional-integral-derivative (PID) controller. Thus, in a typical SOM learning setting, this improvement translates to faster convergence. The basic idea is primarily motivated by the urgent need to develop algorithms with the competence to converge faster and more efficiently than conventional techniques. The MIL-SOM algorithm is tested on four training geographic datasets representing biomedical and disease informatics application domains. Experimental results show that the MIL-SOM algorithm provides a competitive, better updating procedure and performance, good robustness, and it runs faster than Kohonen's SOM. PMID:22481977

  10. Substrate lability and plant activity controls greenhouse gas release from Neotropical peatland

    NASA Astrophysics Data System (ADS)

    Sjogersten, Sofie; Hoyos, Jorge; Lomax, Barry; Turner, Ben; Wright, Emma

    2014-05-01

    Almost one third of global CO2 emissions resulting from land use change and substantial CH4 emissions originate from tropical peatlands. However, our understanding of the controls of CO2 and CH4 release from tropical peatlands are limited. The aim of this study was to investigate the role of peat lability and the activity of the vegetation on gas release using a combination of field and laboratory experiments. We demonstrated that peat lability constrained CH4 production to the surface peat under anaerobic conditions. The presence of plants shifted the C balance from a C source to a C sink with respect to CO2 while the activity of the root system strongly influenced CH4 emissions through its impact on soil O2 inputs. Both field and laboratory data suggest a coupling between the photosynthetic activity of the vegetation and the release of both CO2 and CH4 following the circadian rhythm of the dominant plant functional types. Forest clearance for agriculture resulted in elevated CH4 release, which we attribute in part to the cessation of root O2 inputs to the peat. We conclude that high emissions of CO2 and CH4 from forested tropical peatlands are likely driven by labile C inputs from the vegetation but that root O2 release may limit CH4 emissions.

  11. Estimating labile particulate iron concentrations in coastal waters from remote sensing data

    NASA Astrophysics Data System (ADS)

    McGaraghan, Anna R.; Kudela, Raphael M.

    2012-02-01

    Owing to the difficulties inherent in measuring trace metals and the importance of iron as a limiting nutrient for biological systems, the ability to monitor particulate iron concentration remotely is desirable. This study examines the relationship between labile particulate iron, described here as weak acid leachable particulate iron or total dissolvable iron, and easily obtained bio-optical measurements. We develop a bio-optical proxy that can be used to estimate large-scale patterns of labile iron concentrations in surface waters, and we extend this by including other environmental variables in a multiple linear regression statistical model. By utilizing a ratio of optical backscatter and fluorescence obtained by satellite, we identify patterns in iron concentrations confirmed by traditional shipboard sampling. This basic relationship is improved with the addition of other environmental parameters in the statistical linear regression model. The optical proxy detects known temporal and spatial trends in average surface iron concentrations in Monterey Bay. The proxy is robust in that similar performance was obtained using two independent particulate iron data sets, but it exhibits weaker correlations than the full statistical model. This proxy will be a valuable tool for oceanographers seeking to monitor iron concentrations in coastal regions and allows for better understanding of the variability of labile particulate iron in surface waters to complement direct measurement of leachable particulate or total dissolvable iron.

  12. In situ Identification of Labile Precursor Compounds and their Short-lived Intermediates in Plants using in vivo Nanospray High-resolution Mass Spectrometry.

    PubMed

    Chang, Qing; Peng, Yue'e; Shi, Bin; Dan, Conghui; Yang, Yijun; Shuai, Qin

    2016-05-01

    Many secondary metabolites in plants are labile compounds which under environmental stress, are difficult to detect and track due to the lack of rapid in situ identification techniques, making plant metabolomics research difficult. Therefore, developing a reliable analytical method for rapid in situ identification of labile compounds and their short-lived intermediates in plants is of great importance. To develop under atmospheric pressure, a rapid in situ method for effective identification of labile compounds and their short-lived intermediates in fresh plants. An in vivo nanospray high-resolution mass spectrometry (HR-MS) method was used for rapid capture of labile compounds and their short-lived intermediates in plants. A quartz capillary was partially inserted into fresh plant tissues, and the liquid flowed out through the capillary tube owing to the capillary effect. A high direct current (d.c.) voltage was applied to the plant to generate a spray of charged droplets from the tip of the capillary carrying bioactive molecules toward the inlet of mass spectrometer for full-scan and MS/MS analysis. Many labile compounds and short-lived intermediates were identified via this method: including glucosinolates and their short-lived intermediates (existing for only 10 s) in Raphanus sativus roots, alliin and its conversion intermediate (existing for 20 s) in Allium sativum and labile precursor compound chlorogenic acid in Malus pumila Mill. The method is an effective approach for in situ identification of internal labile compounds and their short-lived intermediates in fresh plants and it can be used as an auxiliary tool to explore the degradation mechanisms of new labile plant compounds. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

  13. Distinguishing the influence of soil organic matter quality from that of environmental constraints in controlling soil heterotrophic respiration along a continental network of sites

    NASA Astrophysics Data System (ADS)

    Pare, D.; Bernier, P. Y.; Trofymow, J. A.; Moore, T. R.

    2011-12-01

    The forest soils of Canada contain large amounts of carbon and its dynamics is one of the key areas of uncertainty in the carbon balance of North America. While estimates of total soil carbon stocks are available, the relative role of soil organic matter (SOM) quality from that of environmental conditions in maintaining these C reservoirs is poorly known. Soil organic matter (SOM) quality was evaluated with the use of both acid hydrolysis and lab incubation at several temperatures for 15 sites part of the Fluxnet Canada network that represent the major ecological forest groups in Canada and included as well two peatland sites. The mineralizable fraction of soil total C (TOC) varied fivefold across sites and soil layers (4 to 25%). To the opposite acid hydrolysable C was a constant fraction of total organic C (TOC) representing 23 and 37% of TOC in the forest floor and top mineral soil (0-20cm) respectively. Total soil carbon pools were highly correlated with pools of recalcitrant C but weakly to labile pools, especially in the mineral soils. These results indicated that soils accumulating a thick organic layer, such as black spruce and peatland soils, are also accumulating potentially labile C that could be mineralised given favourable environmental conditions. However, this relationship is barely significant for the mineral soils where greater C accumulation indicated in essence more accumulation into recalcitrant pools. Mineralized C was correlated with cellulose concentration in the forest floor (R=0.68) and not with acid-hydrolizable C in either soil horizons suggesting that this fraction in non-relevant to C dynamics. Estimates soil heterotrophic respiration (Rh-lab) using incubation derived equation and field soil hourly temperatures were compared with the size of the soil potentially mineralizable C pool (labile C). The difference between these two figures was large for soil having a large portion of their C reserves in the organic layer but was small for

  14. [Character of brain interhemispheric relation in children at forming labile arterial hypertension].

    PubMed

    Koroleva, N V; Kolesnikov, S I; Bugun, O V; Dolgikh, V V

    2010-01-01

    Electroencephalography investigations were carried out twice in 26 schoolchildren in the age of 7-8 years and in the age of 9-10 years. The control group included healthy children: the research group included children in whom in the age of 7-8 years the normal level of arterial pressure was registered, and in whom in the age of 9-10 years labile arterial hypertension was revealed. It is revealed, that in children of younger school age forming of the labile form of arterial hypertension is connected whit infringement of processes of age changes of intercortical and cortical-subcortical interrelations and forming of rigidly integrated system of interhemispheric relations. Its mechanism of realization is carried out due to hyperactivation of the right hemisphere and it is incorporated on preclinical stage.

  15. Wet-milling transgenic maize seed for fraction enrichment of recombinant subunit vaccine.

    PubMed

    Moeller, Lorena; Taylor-Vokes, Raye; Fox, Steve; Gan, Qinglei; Johnson, Lawrence; Wang, Kan

    2010-01-01

    The production of recombinant proteins in plants continues to be of great interest for prospective large-scale manufacturing of industrial enzymes, nutrition products, and vaccines. This work describes fractionation by wet-milling of transgenic maize expressing the B subunit of the heat-labile enterotoxin of Escherichia coli (LT-B), a potent immunogen and candidate for oral vaccine and vaccine components. The LT-B gene was directed to express in seed by an endosperm specific promoter. Two steeping treatments, traditional steeping (TS, 0.2% SO(2) + 0.5% lactic acid) and water steeping (WS, water only), were evaluated to determine effects on recovery of functional LT-B in wet-milled fractions. The overall recovery of the LT-B protein from WS treatment was 1.5-fold greater than that from TS treatment. In both steeping types, LT-B was distributed similarly among the fractions, resulting in enrichment of functional LT-B in fine fiber, coarse fiber and pericarp fractions by concentration factors of 1.5 to 8 relative to the whole kernels on a per-mass basis. Combined with endosperm-specific expression and secretory pathway targeting, wet-milling enables enrichment of high-value recombinant proteins in low-value fractions, such as the fine fiber, and co-utilization of remaining fractions in alternative industrial applications.

  16. Protein degradation by ubiquitin–proteasome system in formation and labilization of contextual conditioning memory

    PubMed Central

    Sol Fustiñana, María; de la Fuente, Verónica; Federman, Noel; Freudenthal, Ramiro

    2014-01-01

    The ubiquitin–proteasome system (UPS) of protein degradation has been evaluated in different forms of neural plasticity and memory. The role of UPS in such processes is controversial. Several results support the idea that the activation of this system in memory consolidation is necessary to overcome negative constrains for plasticity. In this case, the inhibition of the UPS during consolidation impairs memory. Similar results were reported for memory reconsolidation. However, in other cases, the inhibition of UPS had no effect on memory consolidation and reconsolidation but impedes the amnesic action of protein synthesis inhibition after retrieval. The last finding suggests a specific action of the UPS inhibitor on memory labilization. However, another interpretation is possible in terms of the synthesis/degradation balance of positive and negative elements in neural plasticity, as was found in the case of long-term potentiation. To evaluate these alternative interpretations, other reconsolidation-interfering drugs than translation inhibitors should be tested. Here we analyzed initially the UPS inhibitor effect in contextual conditioning in crabs. We found that UPS inhibition during consolidation impaired long-term memory. In contrast, UPS inhibition did not affect memory reconsolidation after contextual retrieval but, in fact, impeded memory labilization, blocking the action of drugs that does not affect directly the protein synthesis. To extend these finding to vertebrates, we performed similar experiments in contextual fear memory in mice. We found that the UPS inhibitor in hippocampus affected memory consolidation and blocked memory labilization after retrieval. These findings exclude alternative interpretations to the requirement of UPS in memory labilization and give evidence of this mechanism in both vertebrates and invertebrates. PMID:25135196

  17. Estimation of the ICBM/2 Organic Matter Simulation Model parameters for biogas digestate mineralisaion in soil using Near Infrared Data.

    NASA Astrophysics Data System (ADS)

    Cabassi, Giovanni; Cavalli, Daniele; Borrelli, Lamberto; Degano, Luigi; Marino Gallina, Pietro

    2014-05-01

    The use of simulation models to study the turnover of soil organic matter (SOM) can support experimental data interpretation and the optimization of manure management. Icbm/2 (Katter, 2001) is a SOM simulation model that describes the turnover of SOM with three pools : one for old humified SOM (CO) and two for added manure, CL ( labile "young" C) and CS (stable "young" C). C outflows from CL and CR to be humified (h) and lost as CO2-C (1-h). All pools decay with firs-order kinetics with parameter kYL, kYR and kO (fig. 1).With this model of SOM turnover, during manure decomposition into the soil, only the evolved CO2 can be easily measured. Near infrared spectroscopy has been proved to be a useful technique for soil C evaluation. Since different soil C pools are expected to have different chemical composition, it was proven that NIR can be used as a cheap technique to develop calibration models to estimate the amount of C belonging to different pools). The aim of this work was compare the calibration of ICBM/2 using C respiration data or optimal NIR prediction of CO and CL pools. A total of six laboratory treatments were established using the same soil corresponding to the application of five fertilisers and a control treatment: 1) control without N fertilisation; 2) ammonium sulphate; 3) anaerobically digested dairy cow slurry (Digested slurry); 4-5) the liquid (Liquid fraction) and solid (Solid fraction) fractions after mechanical separation of Digested slurry; and 6) anaerobically stored dairy cow slurry (Stored slurry). The "nursery" method was used with 12 sampling dates. NIR analysis were performed on the air dried grounded soils. Spectra were collected using an FT-NIR Spectrometer. Parameters calibration was done separately for each soil using the downhill simplex method. For each manure, a C partitioning factor (Fi) was optimised. In each optimization step respiration measured data or NIR estimates CL and CO were used as imput for minimisation objective

  18. A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury

    DTIC Science & Technology

    2010-10-01

    comparable to lithium in treating acutely manic bipolar patients, and the FDA approved it in 1995 for this indication. Also, it is used in conjunction with...A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury PRINCIPAL INVESTIGATOR...Lability and Alcohol Use Following Traumatic Brain Injury 5b. GRANT NUMBER W81XWH-08-2-0652 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S

  19. Utilisation of young and old soil carbon sources by microbial groups differ during the growing season and between experimental treatments in a long-term field experiment

    NASA Astrophysics Data System (ADS)

    Börjesson, Gunnar; Menichetti, Lorenzo; Thornton, Barry; Campbell, Colin; Kätterer, Thomas

    2014-05-01

    the vegetation period the values were much lower (-21.85 o). This coincided with a strong increase of the PLFA 18:2 (from 0.99 up to 2.37 nmol g dry wt soil-1), indicating utilisation of old organic matter by fungi, while mono-unsaturated PLFAs, indicating Gram-negative bacteria, were more frequent before and after the growing season. Microbial dynamics in the unfertilised control followed the same seasonal pattern but PLFAs were less enriched in 13C due to lower yields compared with the N-fertilised treatment. The addition of organic amendments (straw or sewage sludge) lowered δ13C-values in PLFAs below values of the control due to input of labile material with C3-origin. PLFAs in the bare fallow treatment, that had not received plant carbon inputs during twelve years, were most 13C depleted among the treatments but still enriched by about 2o compared with SOM, indicating a degree of microbial fractionation.

  20. Controls on the distribution of fluorescent dissolved organic matter during an under‐ice algal bloom in the western Arctic Ocean

    PubMed Central

    Weiss, Elliot L.; Schieber, Brian; Greg Mitchell, B.

    2017-01-01

    Abstract In this study we used fluorescence excitation and emission matrix spectroscopy, hydrographic data, and a self‐organizing map (SOM) analysis to assess the spatial distribution of labile and refractory fluorescent dissolved organic matter (FDOM) for the Chukchi and Beaufort Seas at the time of a massive under‐ice phytoplankton bloom during early summer 2011. Biogeochemical properties were assessed through decomposition of water property classes and sample classification that employed a SOM neural network‐based analysis which classified 10 clusters from 269 samples and 17 variables. The terrestrial, humic‐like component FDOM (ArC1, 4.98 ± 1.54 Quinine Sulfate Units (QSU)) and protein‐like component FDOM (ArC3, 1.63 ± 0.88 QSU) were found to have elevated fluorescence in the Lower Polar Mixed Layer (LPML) (salinity ~29.56 ± 0.76). In the LPML water mass, the observed contribution of meteoric water fraction was 17%, relative to a 12% contribution from the sea ice melt fraction. The labile ArC3‐protein‐like component (2.01 ± 1.92 QSU) was also observed to be elevated in the Pacific Winter Waters mass, where the under‐ice algal bloom was observed (~40–50 m). We interpreted these relationships to indicate that the accumulation and variable distribution of the protein‐like component on the shelf could be influenced directly by sea ice melt, transport, and mixing processes and indirectly by the in situ algal bloom and microbial activity. ArC5, corresponding to what is commonly considered marine humic FDOM, indicated a bimodal distribution with high values in both the freshest and saltiest waters. The association of ArC5 with deep, dense salty water is consistent with this component as refractory humic‐like FDOM, whereas our evidence of a terrestrial origin challenges this classic paradigm for this component. PMID:28989231

  1. Controls on the distribution of fluorescent dissolved organic matter during an under-ice algal bloom in the western Arctic Ocean.

    PubMed

    Mendoza, Wilson G; Weiss, Elliot L; Schieber, Brian; Greg Mitchell, B

    2017-07-01

    In this study we used fluorescence excitation and emission matrix spectroscopy, hydrographic data, and a self-organizing map (SOM) analysis to assess the spatial distribution of labile and refractory fluorescent dissolved organic matter (FDOM) for the Chukchi and Beaufort Seas at the time of a massive under-ice phytoplankton bloom during early summer 2011. Biogeochemical properties were assessed through decomposition of water property classes and sample classification that employed a SOM neural network-based analysis which classified 10 clusters from 269 samples and 17 variables. The terrestrial, humic-like component FDOM (ArC1, 4.98 ± 1.54 Quinine Sulfate Units (QSU)) and protein-like component FDOM (ArC3, 1.63 ± 0.88 QSU) were found to have elevated fluorescence in the Lower Polar Mixed Layer (LPML) (salinity ~29.56 ± 0.76). In the LPML water mass, the observed contribution of meteoric water fraction was 17%, relative to a 12% contribution from the sea ice melt fraction. The labile ArC3-protein-like component (2.01 ± 1.92 QSU) was also observed to be elevated in the Pacific Winter Waters mass, where the under-ice algal bloom was observed (~40-50 m). We interpreted these relationships to indicate that the accumulation and variable distribution of the protein-like component on the shelf could be influenced directly by sea ice melt, transport, and mixing processes and indirectly by the in situ algal bloom and microbial activity. ArC5, corresponding to what is commonly considered marine humic FDOM, indicated a bimodal distribution with high values in both the freshest and saltiest waters. The association of ArC5 with deep, dense salty water is consistent with this component as refractory humic-like FDOM, whereas our evidence of a terrestrial origin challenges this classic paradigm for this component.

  2. The interactive effects of affect lability, negative urgency, and sensation seeking on young adult problematic drinking.

    PubMed

    Karyadi, Kenny; Coskunpinar, Ayca; Dir, Allyson L; Cyders, Melissa A

    2013-01-01

    Prior studies have suggested that affect lability might reduce the risk for problematic drinking among sensation seekers by compensating for their deficiencies in emotional reactivity and among individuals high on negative urgency by disrupting stable negative emotions. Due to the high prevalence of college drinking, this study examined whether affect lability interacted with sensation seeking and negative urgency to influence college student problematic drinking. 414 college drinkers (mean age: 20, 77% female, and 74% Caucasian) from a US Midwestern University completed self-administered questionnaires online. Consistent with our hypotheses, our results indicated that the effects of sensation seeking and negative urgency on problematic drinking weakened at higher levels of affect lability. These findings emphasize the importance of considering specific emotional contexts in understanding how negative urgency and sensation seeking create risk for problematic drinking among college students. These findings might also help us better understand how to reduce problematic drinking among sensation seekers and individuals high on negative urgency.

  3. The Interactive Effects of Affect Lability, Negative Urgency, and Sensation Seeking on Young Adult Problematic Drinking

    PubMed Central

    Karyadi, Kenny; Coskunpinar, Ayca; Dir, Allyson L.; Cyders, Melissa A.

    2013-01-01

    Prior studies have suggested that affect lability might reduce the risk for problematic drinking among sensation seekers by compensating for their deficiencies in emotional reactivity and among individuals high on negative urgency by disrupting stable negative emotions. Due to the high prevalence of college drinking, this study examined whether affect lability interacted with sensation seeking and negative urgency to influence college student problematic drinking. 414 college drinkers (mean age: 20, 77% female, and 74% Caucasian) from a US Midwestern University completed self-administered questionnaires online. Consistent with our hypotheses, our results indicated that the effects of sensation seeking and negative urgency on problematic drinking weakened at higher levels of affect lability. These findings emphasize the importance of considering specific emotional contexts in understanding how negative urgency and sensation seeking create risk for problematic drinking among college students. These findings might also help us better understand how to reduce problematic drinking among sensation seekers and individuals high on negative urgency. PMID:24826366

  4. Innovative use of self-organising maps (SOMs) in model validation.

    NASA Astrophysics Data System (ADS)

    Jolly, Ben; McDonald, Adrian; Coggins, Jack

    2016-04-01

    We present an innovative combination of techniques for validation of numerical weather prediction (NWP) output against both observations and reanalyses using two classification schemes, demonstrated by a validation of the operational NWP 'AMPS' (the Antarctic Mesoscale Prediction System). Historically, model validation techniques have centred on case studies or statistics at various time scales (yearly/seasonal/monthly). Within the past decade the latter technique has been expanded by the addition of classification schemes in place of time scales, allowing more precise analysis. Classifications are typically generated for either the model or the observations, then used to create composites for both which are compared. Our method creates and trains a single self-organising map (SOM) on both the model output and observations, which is then used to classify both datasets using the same class definitions. In addition to the standard statistics on class composites, we compare the classifications themselves between the model and the observations. To add further context to the area studied, we use the same techniques to compare the SOM classifications with regimes developed for another study to great effect. The AMPS validation study compares model output against surface observations from SNOWWEB and existing University of Wisconsin-Madison Antarctic Automatic Weather Stations (AWS) during two months over the austral summer of 2014-15. Twelve SOM classes were defined in a '4 x 3' pattern, trained on both model output and observations of 2 m wind components, then used to classify both training datasets. Simple statistics (correlation, bias and normalised root-mean-square-difference) computed for SOM class composites showed that AMPS performed well during extreme weather events, but less well during lighter winds and poorly during the more changeable conditions between either extreme. Comparison of the classification time-series showed that, while correlations were lower

  5. Analysis and modeling of heat-labile enterotoxins of Escherichia coli suggests a novel space with insights into receptor preference.

    PubMed

    Krishna Raja, M; Ghosh, Asit Ranjan; Vino, S; Sajitha Lulu, S

    2015-01-01

    Features of heat-labile enterotoxins of Escherichia coli which make them fit to use as novel receptors for antidiarrheals are not completely explored. Data-set of 14 different serovars of enterotoxigenic Escherichia coli producing heat-labile toxins were taken from NCBI Genbank database and used in the study. Sequence analysis showed mutations in different subunits and also at their interface residues. As these toxins lack crystallography structures, homology modeling using Modeller 9.11 led to the structural approximation for the E. coli producing heat-labile toxins. Interaction of modeled toxin subunits with proanthocyanidin, an antidiarrheal showed several strong hydrogen bonding interactions at the cost of minimized energy. The hits were subsequently characterized by molecular dynamics simulation studies to monitor their binding stabilities. This study looks into novel space where the ligand can choose the receptor preference not as a whole but as an individual subunit. Mutation at interface residues and interaction among subunits along with the binding of ligand to individual subunits would help to design a non-toxic labile toxin and also to improve the therapeutics.

  6. Protection of Pyruvate,Pi Dikinase from Maize against Cold Lability by Compatible Solutes 1

    PubMed Central

    Krall, John P.; Edwards, Gerald E.; Andreo, Carlos S.

    1989-01-01

    Most C4 species are chilling sensitive and certain enzymes like pyruvate,Pi dikinase of the C4 pathway are also cold labile. The ability of cations and compatible solutes to protect maize (Zea mays) dikinase against cold lability was examined. The enzyme in desalted extracts at pH 8 from preilluminated leaves could be protected against cold lability (at 0°C) by the divalent cations Mn2+, Mg2+, and Ca2+. There was substantial protection by sulfate based salts but little protection by chloride based salts of potassium or ammonium (concentration 250 millimolar). The degree of protection against cold lability under limiting MgCl2 (5 millimolar) was pH sensitive (maximum protection at pH 8), but independent of ionic strength (up to 250 millimolar by addition of KCl). In catalysis Mg2+ is required and Mn2+ could not substitute as a cofactor. Several compatible solutes reduced or prevented the cold inactivation of dikinase (in desalted extracts and the partially purified enzyme), including glycerol, proline, glycinebetaine and trimethylamine-N-oxide (TMAO). TMAO and Mg2+ had an additive effect in protecting dikinase against cold inactivation. TMAO could largely substitute for the divalent cation and addition of TMAO during cold treatment prevented further inactivation. Cold inactivation was partially reversed by incubation at room temperature; with addition of TMAO reversal was complete. The temperature dependence of inactivation at pH 8 and 3 millimolar MgCl2 was evaluated by incubation at 2 to 17°C for 45 minutes, followed by assay at room temperature. At preincubation temperatures below 11°C there was a progressive inactivation which could be prevented by TMAO (450 millimolar). The results are discussed relative to possible effects of the solutes on the quaternary structure of this enzyme, which is known to dissociate at low temperatures. PMID:16666527

  7. Analytical methods for determination of free metal ion concentration, labile species fraction and metal complexation capacity of environmental waters: a review.

    PubMed

    Pesavento, Maria; Alberti, Giancarla; Biesuz, Raffaela

    2009-01-12

    Different experimental approaches have been suggested in the last few decades to determine metal species in complex matrices of unknown composition as environmental waters. The methods are mainly focused on the determination of single species or groups of species. The more recent developments in trace elements speciation are reviewed focusing on methods for labile and free metal determination. Electrochemical procedures with low detection limit as anodic stripping voltammetry (ASV) and the competing ligand exchange with adsorption cathodic stripping voltammetry (CLE-AdCSV) have been widely employed in metal distribution studies in natural waters. Other electrochemical methods such as stripping chronopotentiometry and AGNES seem to be promising to evaluate the free metal concentration at the low levels of environmental samples. Separation techniques based on ion exchange (IE) and complexing resins (CR), and micro separation methods as the Donnan membrane technique (DMT), diffusive gradients in thin-film gels (DGT) and the permeation liquid membrane (PLM), are among the non-electrochemical methods largely used in this field and reviewed in the text. Under appropriate conditions such techniques make possible the evaluation of free metal ion concentration.

  8. Mechanism-based design of labile precursors for chromium(I) chemistry

    DOE PAGES

    Akturk, Eser S.; Yap, Glenn P. A.; Theopold, Klaus H.

    2015-08-27

    Here, we report that dinitrogen complexes of the type Tp R,RCr–N 2–CrTp R,R are not the most labile precursors for Cr(I) chemistry, as they are sterically protected from obligatory associative ligand substitution. A mononuclear alkyne complex – Tp tBu,MeCr(η 2-C 2(SiMe 3) 2) – proved to be much more reactive.

  9. Immunologic Interrelationships of Coliform Heat-Labile and Heat-Stable Enterotoxins

    DTIC Science & Technology

    1980-01-15

    PUBLICATIONS Supported by Contract No. DAMD 17-77-C-7032 1. Klipstein FA, Engert RF: Immunological interrelationships between cholera toxin and the...heat-labile and heat-stable enterotoxins of coliform bacteria. Infec Immun 18:110, 1977 2. Klipstein FA, Engert RF: Immunological relationship of...different preparations of coliform enterotoxins. Infec Immun 21:771, 1978 3. Klipstein FA, Engert RF: Reversal of jejunal water secretion by glucose in

  10. Immunological Interrelationships of Coliform Heat-Labile and Heat-Stable Enterotoxins

    DTIC Science & Technology

    1981-01-01

    FA, Engert RF: Immunological interrelationships between cholera toxin and the heat-labile and heat-stable enterotoxins of coliforn, bacteria. Infec...Irnmun 18:110, 1977 2. Klipstein FA, Engert RF: Immunological relaticnsh~p of different preparations of coliform enterotoxins. Infec Immun 21:771, 1918...3 Klipstein FA, Engert RF: Reversal of jejunal water secretion by glucose in rats exposed to coliform enterotoxcins. Gastroenterology 75:255, 1978 4

  11. Immunological Interrelationships of Coliform Heat-Labile and Heat-Stable Enterotoxins

    DTIC Science & Technology

    1981-09-01

    FA, Engert RF: Immunological interrelationships between cholera toxin and the heat -labile and hoat-stable enterotoxins of coliform bacteria. Infec...Immun 18:110, 1977 2. Klipstein FA, Engert RF: Immunological relationship of different preparations of coliform enterotoxins. Infec Immun 21:771, 1978...3. Klipstein FA, Engert RF: Reversal of jejunal water secretion by glucose in rats exposed to coliform enterotoxins. Gastroenteroloj y 75:255, 1978 4

  12. Molecular insights into the microbial formation of marine dissolved organic matter: recalcitrant or labile?

    NASA Astrophysics Data System (ADS)

    Koch, B. P.; Kattner, G.; Witt, M.; Passow, U.

    2014-08-01

    The degradation of marine dissolved organic matter (DOM) is an important control variable in the global carbon cycle. For our understanding of the kinetics of organic matter cycling in the ocean, it is crucial to achieve a mechanistic and molecular understanding of its transformation processes. A long-term microbial experiment was performed to follow the production of non-labile DOM by marine bacteria. Two different glucose concentrations and dissolved algal exudates were used as substrates. We monitored the bacterial abundance, concentrations of dissolved and particulate organic carbon (DOC, POC), nutrients, amino acids and transparent exopolymer particles (TEP) for 2 years. The molecular characterization of extracted DOM was performed by ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) after 70 days and after ∼2 years of incubation. Although glucose quickly degraded, a non-labile DOC background (5-9% of the initial DOC) was generated in the glucose incubations. Only 20% of the organic carbon from the algal exudate degraded within the 2 years of incubation. The degradation rates for the non-labile DOC background in the different treatments varied between 1 and 11 μmol DOC L-1 year-1. Transparent exopolymer particles, which are released by microorganisms, were produced during glucose degradation but decreased back to half of the maximum concentration within less than 3 weeks (degradation rate: 25 μg xanthan gum equivalents L-1 d-1) and were below detection in all treatments after 2 years. Additional glucose was added after 2 years to test whether labile substrate can promote the degradation of background DOC (co-metabolism; priming effect). A priming effect was not observed but the glucose addition led to a slight increase of background DOC. The molecular analysis demonstrated that DOM generated during glucose degradation differed appreciably from DOM transformed during the degradation of the algal exudates. Our

  13. Trauma exposure and heavy drinking and drug use among college students: Identifying the roles of negative and positive affect lability in a daily diary study.

    PubMed

    Weiss, Nicole H; Bold, Krysten W; Contractor, Ateka A; Sullivan, Tami P; Armeli, Stephen; Tennen, Howard

    2018-04-01

    Trauma exposure is linked to heavy drinking and drug use among college students. Extant research reveals positive associations between negative affect lability and both trauma exposure and alcohol use. This study aimed to extend past research by using daily diary methods to test whether (a) individuals with (versus without) trauma exposure experience greater negative and positive affect lability, (b) negative and positive affect lability are associated with heavy drinking and drug use, and (c) negative and positive affect lability mediate the relations between trauma exposure and heavy drinking and drug use. Participants were 1640 college students (M age=19.2, 54% female, 80% European American) who provided daily diary data for 30days via online surveys. Daily diaries assessed negative and positive affect and substance use (i.e., percent days of heavy drinking, percent days of drug use, total number of drugs used). Individuals with (versus without) a history of trauma exposure demonstrated higher levels of negative and positive affect lability. Negative, but not positive, affect lability was associated with percent days of heavy drinking, percent days of drug use, and total number of drugs used, and mediated the associations between trauma exposure and heavy drinking and drug use outcomes. Findings provide support for the underlying role of negative affect lability in the relations between trauma exposure and heavy drinking and drug use among college students, suggesting that treatments targeting negative affect lability may potentially serve to reduce heavy drinking and drug use among trauma-exposed college students. Copyright © 2017 Elsevier Ltd. All rights reserved.

  14. DETERMINATION OF APPARENT QUANTUM YIELD SPECTRA FOR THE FORMATION OF BIOLOGICALLY LABILE PHOTOPRODUCTS

    EPA Science Inventory

    Quantum yield spectra for the photochemical formation of biologically labile photoproducts from dissolved organic matter (DOM) have not been available previously, although they would greatly facilitate attempts to model photoproduct formation rates across latitudinal, seasonal, a...

  15. Predicting the solubility and lability of Zn, Cd, and Pb in soils from a minespoil-contaminated catchment by stable isotopic exchange

    NASA Astrophysics Data System (ADS)

    Marzouk, E. R.; Chenery, S. R.; Young, S. D.

    2013-12-01

    The Rookhope catchment of Weardale, England, has a diverse legacy of contaminated soils due to extensive lead mining activity over four centuries. We measured the isotopically exchangeable content of Pb, Cd and Zn (E-values) in a large representative subset of the catchment soils (n = 246) using stable isotope dilution. All three metals displayed a wide range of %E-values (c. 1-100%) but relative lability followed the sequence Cd > Pb > Zn. A refinement of the stable isotope dilution approach also enabled detection of non-reactive metal contained within suspended sub-micron (<0.22 μm) colloidal particles (SCP-metal). For most soils, the presence of non-labile SCP-metal caused only minor over-estimation of E-values (<2%) but the effect was greater for soils with particularly large humus or carbonate contents. Approximately 80%, 53% and 66% of the variability in Zn, Cd and Pb %E-values (respectively) could be explained by pH, loss on ignition and total metal content. E-values were affected by the presence of ore minerals at high metal contents leading to an inconsistent trend in the relationship between %E-value and soil metal concentration. Metal solubility, in the soil suspensions used to measure E-values, was predicted using the WHAM geochemical speciation model (versions VI and VII). The use of total and isotopically exchangeable metal as alternative input variables was compared; the latter provided significantly better predictions of solubility, especially in the case of Zn. Lead solubility was less well predicted by either version of WHAM, with over-prediction at low pH and under-prediction at high soil pH values. Quantify the isotopically exchangeable fractions of Zn, Cd and Pb (E-values), and assess their local and regional variability, using multi-element stable isotope dilution, in a diverse range of soil ecosystems within the catchment of an old Pb/Zn mining area. Assess the controlling influences of soil properties on metal lability and develop

  16. Preclinical evaluation of Som230 as a radiation mitigator in a mouse model: postexposure time window and mechanisms of action.

    PubMed

    Fu, Qiang; Berbée, Maaike; Wang, Wenze; Boerma, Marjan; Wang, Junru; Schmid, Herbert A; Hauer-Jensen, Martin

    2011-06-01

    The somatostatin analog SOM230 has potent radioprophylactic and radiation mitigating properties that are unrelated to cytoprotection but appear to be due to suppression of secretion of pancreatic enzymes into the intestinal lumen. To determine the maximal postirradiation time window for administration, male CD2F1 mice were exposed to 8.5-11 Gy total-body radiation; SOM230 (0.5, 2 or 5 mg/kg) or vehicle was given by twice daily subcutaneous injections for 14 days, beginning 24-72 h after irradiation, and 30-day animal survival was recorded. The contribution of the gut to systemic cytokine levels was estimated by analyzing plasma samples obtained simultaneously from the portal vein and carotid artery. The effect of SOM230 on cell trypsin secretion was assessed in vitro and intestinal proteolytic activity was measured in vivo. SOM230 was associated with a 40-60% absolute improvement in overall postirradiation survival when treatment was started 48 h after irradiation and even exhibited a statistically significant survival benefit when started at 72 h. SOM230 ameliorated the radiation-induced decrease in chemokine (C-X-C motif) ligand 9 (CXCL9). SOM230 inhibited pancreatic acinar cell trypsin secretion in vitro in a dose-dependent fashion and reduced intraluminal and intestinal tissue proteolytic activity in vivo. SOM230 is an excellent radiation mitigator with a postirradiation time window in excess of 48 h. The mechanism likely involves preservation of intestinal barrier function due to decreased secretion of pancreatic enzymes into the bowel lumen.

  17. Changes in the temperature sensitivity of SOM decomposition with grassland succession: implications for soil C sequestration.

    PubMed

    Nianpeng, He; Ruomeng, Wang; Yang, Gao; Jingzhong, Dai; Xuefa, Wen; Guirui, Yu

    2013-12-01

    Understanding the temperature sensitivity (Q 10) of soil organic matter (SOM) decomposition is important for predicting soil carbon (C) sequestration in terrestrial ecosystems under warming scenarios. Whether Q 10 varies predictably with ecosystem succession and the ways in which the stoichiometry of input SOM influences Q 10 remain largely unknown. We investigate these issues using a grassland succession series from free-grazing to 31-year grazing-exclusion grasslands in Inner Mongolia, and an incubation experiment performed at six temperatures (0, 5, 10, 15, 20, and 25°C) and with four substrates: control (CK), glucose (GLU), mixed grass leaf (GRA), and Medicago falcata leaf (MED). The results showed that basal soil respiration (20°C) and microbial biomass C (MBC) logarithmically decreased with grassland succession. Q 10 decreased logarithmically from 1.43 in free-grazing grasslands to 1.22 in 31-year grazing-exclusion grasslands. Q 10 increased significantly with the addition of substrates, and the Q 10 levels increased with increase in N:C ratios of substrate. Moreover, accumulated C mineralization was controlled by the N:C ratio of newly input SOM and by incubation temperature. Changes in Q 10 with grassland ecosystem succession are controlled by the stoichiometry of newly input SOM, MBC, and SOM quality, and the combined effects of which could partially explain the mechanisms underlying soil C sequestration in the long-term grazing-exclusion grasslands in Inner Mongolia, China. The findings highlight the effect of substrate stoichiometry on Q 10 which requires further study.

  18. Molecular imaging of labile iron(II) pools in living cells with a turn-on fluorescent probe.

    PubMed

    Au-Yeung, Ho Yu; Chan, Jefferson; Chantarojsiri, Teera; Chang, Christopher J

    2013-10-09

    Iron is an essential metal for living organisms, but misregulation of its homeostasis at the cellular level can trigger detrimental oxidative and/or nitrosative stress and damage events. Motivated to help study the physiological and pathological consequences of biological iron regulation, we now report a reaction-based strategy for monitoring labile Fe(2+) pools in aqueous solution and living cells. Iron Probe 1 (IP1) exploits a bioinspired, iron-mediated oxidative C-O bond cleavage reaction to achieve a selective turn-on response to Fe(2+) over a range of cellular metal ions in their bioavailable forms. We show that this first-generation chemical tool for fluorescence Fe(2+) detection can visualize changes in exchangeable iron stores in living cells upon iron supplementation or depletion, including labile iron pools at endogenous, basal levels. Moreover, IP1 can be used to identify reversible expansion of labile iron pools by stimulation with vitamin C or the iron regulatory hormone hepcidin, providing a starting point for further investigations of iron signaling and stress events in living systems as well as future probe development.

  19. Multi-Physics Modeling of Molten Salt Transport in Solid Oxide Membrane (SOM) Electrolysis and Recycling of Magnesium

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Powell, Adam; Pati, Soobhankar

    2012-03-11

    Solid Oxide Membrane (SOM) Electrolysis is a new energy-efficient zero-emissions process for producing high-purity magnesium and high-purity oxygen directly from industrial-grade MgO. SOM Recycling combines SOM electrolysis with electrorefining, continuously and efficiently producing high-purity magnesium from low-purity partially oxidized scrap. In both processes, electrolysis and/or electrorefining take place in the crucible, where raw material is continuously fed into the molten salt electrolyte, producing magnesium vapor at the cathode and oxygen at the inert anode inside the SOM. This paper describes a three-dimensional multi-physics finite-element model of ionic current, fluid flow driven by argon bubbling and thermal buoyancy, and heat andmore » mass transport in the crucible. The model predicts the effects of stirring on the anode boundary layer and its time scale of formation, and the effect of natural convection at the outer wall. MOxST has developed this model as a tool for scale-up design of these closely-related processes.« less

  20. Priming effect in topsoil and subsoil induced by earthworm burrows

    NASA Astrophysics Data System (ADS)

    Thu, Duyen Hoang Thi

    2017-04-01

    Earthworms (Lumbricus terrestris L.) not only affect soil physics, but they also boost microbial activities and consequently important hotspots of microbial mediated carbon and C turnover through their burrowing activity. However, it is still unknown to which extend earthworms affect priming effect in top- and subsoil horizons. More labile C inputs in earthworm burrows were hypothesized to trigger higher priming of soil organic matter (SOM) decomposition compared to rhizosphere and bulk soil. Moreover, this effect was expected to be more pronounced in subsoil due to its greater C and nutrient limitation. To test these hypotheses, biopores and bulk soil were sampled from topsoil (0-30 cm) and two subsoil depths (45-75 and 75-105 cm). Additionally, rhizosphere samples were taken from the topsoil. Total organic C (Corg), total N (TN), total P (TP) and enzyme activities involved in C-, N-, and P-cycling (cellobiohydrolase, β-glucosidase, xylanase, chitinase, leucine aminopeptidase and phosphatase) were measured. Priming effects were calculated as the difference in SOM-derived CO2 from soil with or without 14C-labelled glucose addition. Enzyme activities in biopores were positively correlated with Corg, TN and TP, but in bulk soil this correlation was negative. The more frequent fresh and labile C inputs to biopores caused 4 to 20 time higher absolute priming of SOM turnover due to enzyme activities that were one order of magnitude higher than in bulk soil. In subsoil biopores, reduced labile C inputs and lower N availability stimulated priming twofold greater than in topsoil. In contrast, a positive priming effect in bulk soil was only detected at 75-105 cm depth. We conclude that earthworm burrows provide not only the linkage between top- and subsoil for C and nutrients, but strongly increase microbial activities and accelerate SOM turnover in subsoil, contributing to nutrient mobilization for roots and CO2 emission increase as a greenhouse gas. Additionally, the

  1. Microbially driven export of labile organic carbon from the Greenland ice sheet

    NASA Astrophysics Data System (ADS)

    Musilova, Michaela; Tranter, Martyn; Wadham, Jemma; Telling, Jon; Tedstone, Andrew; Anesio, Alexandre M.

    2017-04-01

    Glaciers and ice sheets are significant sources of dissolved organic carbon and nutrients to downstream subglacial and marine ecosystems. Climatically driven increases in glacial runoff are expected to intensify the impact of exported nutrients on local and regional downstream environments. However, the origin and bioreactivity of dissolved organic carbon from glacier surfaces are not fully understood. Here, we present simultaneous measurements of gross primary production, community respiration, dissolved organic carbon composition and export from different surface habitats of the Greenland ice sheet, throughout the ablation season. We found that microbial production was significantly correlated with the concentration of labile dissolved organic species in glacier surface meltwater. Further, we determined that freely available organic compounds made up 62% of the dissolved organic carbon exported from the glacier surface through streams. We therefore conclude that microbial communities are the primary driver for labile dissolved organic carbon production and recycling on glacier surfaces, and that glacier dissolved organic carbon export is dependent on active microbial processes during the melt season.

  2. Labile dissolved organic carbon supply limits hyporheic denitrification

    NASA Astrophysics Data System (ADS)

    Zarnetske, Jay P.; Haggerty, Roy; Wondzell, Steven M.; Baker, Michelle A.

    2011-12-01

    We used an in situ steady state 15N-labeled nitrate (15NO3-) and acetate (AcO-) well-to-wells injection experiment to determine how the availability of labile dissolved organic carbon (DOC) as AcO-influences microbial denitrification in the hyporheic zone of an upland (third-order) agricultural stream. The experimental wells receiving conservative (Cl- and Br) and reactive (15NO3-) solute tracers had hyporheic median residence times of 7.0 to 13.1 h, nominal flowpath lengths of 0.7 to 3.7 m, and hypoxic conditions (<1.5 mg O2 L-1). All receiving wells demonstrated 15N2 production during ambient conditions, indicating that the hyporheic zone was an environment with active denitrification. The subsequent addition of AcO- stimulated more denitrification as evidenced by significant δ15N2 increases by factors of 2.7 to 26.1 in receiving wells and significant decreases of NO3- and DO in the two wells most hydrologically connected to the injection. The rate of nitrate removal in the hyporheic zone increased from 218 kg ha-1 yr-1 to 521 kg ha-1 yr-1 under elevated AcO- conditions. In all receiving wells, increases of bromide and 15N2 occurred without concurrent increases in AcO-, indicating that 100% of AcO- was retained or lost in the hyporheic zone. These results support the hypothesis that denitrification in anaerobic portions of the hyporheic zone is limited by labile DOC supply.

  3. Solid Oxide Membrane (SOM) Process for Facile Electrosynthesis of Metal Carbides and Composites

    NASA Astrophysics Data System (ADS)

    Zou, Xingli; Chen, Chaoyi; Lu, Xionggang; Li, Shangshu; Xu, Qian; Zhou, Zhongfu; Ding, Weizhong

    2017-02-01

    Metal carbides (MCs) and composites including TiC, SiC, TaC, ZrC, NbC, Ti5Si3/TiC, and Nb/Nb5Si3 have been directly electrosynthesized from their stoichiometric metal oxides/carbon (MOs/C) mixture precursors by an innovative solid oxide membrane (SOM)-assisted electrochemical process. MOs/C mixture powders including TiO2/C, SiO2/C, Ta2O5/C, ZrO2/C, Nb2O5/C, TiO2/SiO2/C, Nb2O5/SiO2 were pressed to form porous pellets and then served as cathode precursors. A SOM-based anode, made from yttria-stabilized zirconia (YSZ)-based membrane, was used to control the electroreduction process. The SOM electrochemical process was performed at 1273 K (1000 °C) and 3.5 to 4.0 V in molten CaCl2. The oxygen component contained in the MOs/C precursors was gradually removed during electroreduction process, and thus, MOs/C can be directly converted into MCs and composites at the cathode. The reaction mechanism of the electroreduction process and the characteristics of the obtained MCs and composites products were systematically investigated. The results show that the electrosynthesis process typically involves compounding, electroreduction, dissolution-electrodeposition, and in situ carbonization processes. The products can be predesigned and controlled to form micro/nanostructured MCs and composites. Multicomponent multilayer composites (MMCs) have also been tried to electrosynthesize in this work. It is suggested that the SOM-assisted electroreduction process has great potential to be used for the facile and green synthesis of various MCs and composites.

  4. Feature combination analysis in smart grid based using SOM for Sudan national grid

    NASA Astrophysics Data System (ADS)

    Bohari, Z. H.; Yusof, M. A. M.; Jali, M. H.; Sulaima, M. F.; Nasir, M. N. M.

    2015-12-01

    In the investigation of power grid security, the cascading failure in multicontingency situations has been a test because of its topological unpredictability and computational expense. Both system investigations and burden positioning routines have their limits. In this project, in view of sorting toward Self Organizing Maps (SOM), incorporated methodology consolidating spatial feature (distance)-based grouping with electrical attributes (load) to evaluate the vulnerability and cascading impact of various part sets in the force lattice. Utilizing the grouping result from SOM, sets of overwhelming stacked beginning victimized people to perform assault conspires and asses the consequent falling impact of their failures, and this SOM-based approach viably distinguishes the more powerless sets of substations than those from the conventional burden positioning and other bunching strategies. The robustness of power grids is a central topic in the design of the so called "smart grid". In this paper, to analyze the measures of importance of the nodes in a power grid under cascading failure. With these efforts, we can distinguish the most vulnerable nodes and protect them, improving the safety of the power grid. Also we can measure if a structure is proper for power grids.

  5. Changes in carbon stability and microbial activity in size fractions of micro-aggregates in a rice soil chronosequence under long term rice cultivation

    NASA Astrophysics Data System (ADS)

    Pan, Genxing; Liu, Yalong; Wang, Ping; Li, Lianqinfg; Cheng, Kun; Zheng, Jufeng; Zhang, Xuhui; Zheng, Jinwei; Bian, Rongjun; Ding, Yuanjun; Ma, Chong

    2016-04-01

    Recent studies have shown soil carbon sequestration through physical protection of relative labile carbon intra micro-aggregates with formation of large sized macro-aggregates under good management of soil and agricultural systems. While carbon stabilization had been increasingly concerned as ecosystem properties, the mechanisms underspin bioactivity of soil carbon with increased carbon stability has been still poorly understood. In this study, topsoil samples were collected from rice soils derived from salt marsh under different length of rice cultivation up to 700 years from eastern China. Particle size fractions (PSF) of soil aggregates were separated using a low energy dispersion protocol. Carbon fractions in the PSFs were analyzed either with FTIR spectroscopy. Soil microbial community of bacterial, fungal and archaeal were analyzed with molecular fingerprinting using specific gene primers. Soil respiration and carbon gain from amended maize as well as enzyme activities were measured using lab incubation protocols. While the PSFs were dominated by the fine sand (200-20μm) and silt fraction (20-2μm), the mass proportion both of sand (2000-200μm) and clay (<2μm) fraction increased with prolonged rice cultivation, giving rise to an increasing trend of mean weight diameter of soil aggregates (also referred to aggregate stability). Soil organic carbon was found most enriched in coarse sand fraction (40-60g/kg), followed by the clay fraction (20-24.5g/kg), but depleted in the silt fraction (~10g/kg). Phenolic and aromatic carbon as recalcitrant pool were high (33-40% of total SOC) in both coarse sand and clay fractions than in both fine sand and silt fractions (20-29% of total SOC). However, the ratio of LOC/total SOC showed a weak decreasing trend with decreasing size of the aggregate fractions. Total gene content in the size fractions followed a similar trend to that of SOC. Bacterial and archaeal gene abundance was concentrated in both sand and clay fractions

  6. The effect of acidification on the bioavailability and electrochemical lability of zinc in seawater

    PubMed Central

    Kim, Ja-Myung; Baars, Oliver

    2016-01-01

    A poorly studied but potentially important consequence of the CO2-induced acidification of the surface ocean is a possible change in the bioavailability of trace metals, which play a critical role in the productivity and population dynamics of marine ecosystems. We report laboratory and field experiments designed to compare quantitatively the effects of acidification on the bioavailability of Zn, a metal essential to the growth of phytoplankton and on the extent of its complexation by model and natural ligands. We observed a good correspondence between the effects of pH on the rate of Zn uptake by a model diatom and the chemical lability of Zn measured by anodic stripping voltammetry (ASV). In model laboratory systems, the chemical lability and the bioavailability of Zn could either increase or decrease at low pH depending on the mix of complexing ligands. In a sample of coastal surface water, we observed similar increases in the ASV-labile and bioavailable Zn concentrations upon acidification, a result contrary to previous observations. These results, which can likely be generalized to other bioactive trace metals, mutatis mutandis, demonstrate the intricacy of the effects of ocean acidification on the chemistry and the ecology of surface seawater. This article is part of the themed issue ‘Biological and climatic impacts of ocean trace element chemistry’. PMID:29035261

  7. The effect of acidification on the bioavailability and electrochemical lability of zinc in seawater.

    PubMed

    Kim, Ja-Myung; Baars, Oliver; Morel, François M M

    2016-11-28

    A poorly studied but potentially important consequence of the CO 2 -induced acidification of the surface ocean is a possible change in the bioavailability of trace metals, which play a critical role in the productivity and population dynamics of marine ecosystems. We report laboratory and field experiments designed to compare quantitatively the effects of acidification on the bioavailability of Zn, a metal essential to the growth of phytoplankton and on the extent of its complexation by model and natural ligands. We observed a good correspondence between the effects of pH on the rate of Zn uptake by a model diatom and the chemical lability of Zn measured by anodic stripping voltammetry (ASV). In model laboratory systems, the chemical lability and the bioavailability of Zn could either increase or decrease at low pH depending on the mix of complexing ligands. In a sample of coastal surface water, we observed similar increases in the ASV-labile and bioavailable Zn concentrations upon acidification, a result contrary to previous observations. These results, which can likely be generalized to other bioactive trace metals, mutatis mutandis , demonstrate the intricacy of the effects of ocean acidification on the chemistry and the ecology of surface seawater.This article is part of the themed issue 'Biological and climatic impacts of ocean trace element chemistry'. © 2016 The Author(s).

  8. SOM neural network fault diagnosis method of polymerization kettle equipment optimized by improved PSO algorithm.

    PubMed

    Wang, Jie-sheng; Li, Shu-xia; Gao, Jie

    2014-01-01

    For meeting the real-time fault diagnosis and the optimization monitoring requirements of the polymerization kettle in the polyvinyl chloride resin (PVC) production process, a fault diagnosis strategy based on the self-organizing map (SOM) neural network is proposed. Firstly, a mapping between the polymerization process data and the fault pattern is established by analyzing the production technology of polymerization kettle equipment. The particle swarm optimization (PSO) algorithm with a new dynamical adjustment method of inertial weights is adopted to optimize the structural parameters of SOM neural network. The fault pattern classification of the polymerization kettle equipment is to realize the nonlinear mapping from symptom set to fault set according to the given symptom set. Finally, the simulation experiments of fault diagnosis are conducted by combining with the industrial on-site historical data of the polymerization kettle and the simulation results show that the proposed PSO-SOM fault diagnosis strategy is effective.

  9. Affective lability mediates the association between childhood trauma and suicide attempts, mixed episodes and co-morbid anxiety disorders in bipolar disorders.

    PubMed

    Aas, M; Henry, C; Bellivier, F; Lajnef, M; Gard, S; Kahn, J-P; Lagerberg, T V; Aminoff, S R; Bjella, T; Leboyer, M; Andreassen, O A; Melle, I; Etain, B

    2017-04-01

    Many studies have shown associations between a history of childhood trauma and more severe or complex clinical features of bipolar disorders (BD), including suicide attempts and earlier illness onset. However, the psychopathological mechanisms underlying these associations are still unknown. Here, we investigated whether affective lability mediates the relationship between childhood trauma and the severe clinical features of BD. A total of 342 participants with BD were recruited from France and Norway. Diagnosis and clinical characteristics were assessed using the Diagnostic Interview for Genetic Studies (DIGS) or the Structured Clinical Interview for DSM-IV Axis I disorders (SCID-I). Affective lability was measured using the short form of the Affective Lability Scale (ALS-SF). A history of childhood trauma was assessed using the Childhood Trauma Questionnaire (CTQ). Mediation analyses were performed using the SPSS process macro. Using the mediation model and covariation for the lifetime number of major mood episodes, affective lability was found to statistically mediate the relationship between childhood trauma experiences and several clinical variables, including suicide attempts, mixed episodes and anxiety disorders. No significant mediation effects were found for rapid cycling or age at onset. Our data suggest that affective lability may represent a psychological dimension that mediates the association between childhood traumatic experiences and the risk of a more severe or complex clinical expression of BD.

  10. Relationship between the lability of sediment-bound Cd and its bioaccumulation in edible oyster.

    PubMed

    Chakraborty, Parthasarathi; Ramteke, Darwin; Chakraborty, Sucharita; Chennuri, Kartheek; Bardhan, Pratirupa

    2015-11-15

    A linkage between Cd speciation in sediments and its bioaccumulation in edible oyster (Crassostrea sp.) from a tropical estuarine system was established. Bioaccumulation of Cd in edible oyster increased with the increasing lability and dissociation rate constants of Cd-sediment complexes in the bottom sediments. Total Cd concentration in sediment was not a good indicator of Cd-bioavailability. Increasing trace metal competition in sediments increased lability and bioavailability of Cd in the tropical estuarine sediment. Low thermodynamic stability and high bioavailability of Cd in the estuarine sediment were responsible for high bioaccumulation of Cd in edible oysters (3.2-12.2mgkg(-1)) even though the total concentration of Cd in the bottom sediment was low (0.17-0.49mgkg(-1)). Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. Enhancement of gamma-aminobutyric acid (GABA) levels using an autochthonous Lactobacillus futsaii CS3 as starter culture in Thai fermented shrimp (Kung-Som).

    PubMed

    Sanchart, Chatthaphisuth; Rattanaporn, Onnicha; Haltrich, Dietmar; Phukpattaranont, Pimpimol; Maneerat, Suppasil

    2017-08-01

    Gamma-aminobutyric acid (GABA) is a non-proteinogenic amino acid, which has a variety of well-characterized beneficial physiological functions. In order to improve GABA levels and the fermentation process of Thai fermented shrimp (Kung-Som), autochthonous Lactobacillus futsaii CS3 was inoculated as a starter culture into Kung-Som, and its effects on the quality of Kung-Som were studied. The optimal conditions for GABA production in Kung-Som as obtained by response surface methodology (RSM) using a central composite design (CCD) were an inoculum size of roughly 10 7 CFU/g (X 1 ) of L. futsaii cells together with the addition of 0.5% (w/w) monosodium glutamate (MSG) (X 2 ), resulting in maximum GABA levels of 10,500 mg per kg fresh product. Under these optimized conditions, the experimental GABA content of Kung-Som with an added starter culture was up to four times higher than that of the control (without starter culture) or commercial Kung-Som products (10,120 mg/kg product). Kung-Som produced by inoculation with L. futsaii CS3 but without addition of MSG showed a considerably increased GABA content of 7790 mg/kg compared to the control. Fermentation time was reduced to less than 1 week for these samples compared to the control batches, which took up to 19 days. Polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE) revealed that L. futsaii CS3 remained prominently throughout the Kung-Som fermentation, and that lactic acid bacteria (LAB) rapidly dominated the total microflora because of this inoculation with L. futsaii CS3. Kung-Som samples with starter culture were accepted as well as commercial ones by 30 panelists (p > 0.05). In conclusion, L. futsaii CS3 is a good starter culture for GABA production, resulting in, improved microbiological safety as well as reduced fermentation time.

  12. Nonimmunoglobulin fraction of human milk inhibits bacterial adhesion (hemagglutination) and enterotoxin binding of Escherichia coli and Vibrio cholerae.

    PubMed Central

    Holmgren, J; Svennerholm, A M; Ahrén, C

    1981-01-01

    Human milk and colostrum samples were divided into an immunoglobulin and a nonimmunoglobulin fraction by immunosorbent chromatography. The ability of these fractions to inhibit bacterial cell adhesion and enterotoxin receptor binding of Vibrio cholerae and various Escherichia coli isolates was then tested by in vitro assays. The strongest effect was generally seen with the nonimmunoglobulin fractions, which were shown to significantly inhibit E. coli cell adhesion (hemagglutination) mediated by CFA/I, CFA/II, or K88 fimbriae (but not type 1 pili) and V. cholerae hemagglutination, as well as the binding of cholera toxin and E. coli heat-labile enterotoxin to GM1 ganglioside. Also, the immunoglobulin fractions had significant inhibitory activity in some of these systems. The results are interpreted to suggest that human milk and colostrum may contain secreted structure analogs of the cell receptors for some bacterial adhesions and enterotoxins; this might contribute to the protective effect of milk against enteric infections. PMID:7021421

  13. Does the increased air humidity affect soil respiration and carbon stocks?

    NASA Astrophysics Data System (ADS)

    Kukumägi, Mai; Celi, Luisella; Said-Pullicino, Daniel; Kupper, Priit; Sõber, Jaak; Lõhmus, Krista; Kutti, Sander; Ostonen, Ivika

    2013-04-01

    Climate manipulation experiments at ecosystem-scale enable us to simulate, investigate and predict changes in carbon balance of forest ecosystems. Considering the predicted increase in air humidity and precipitation for northern latitudes, this work aimed at investigating the effect of increased air humidity on soil respiration, distribution of soil organic matter (SOM) among pools having different turnover times, and microbial, fine root and rhizome biomass. The study was carried out in silver birch (Betula pendula Roth.) and hybrid aspen (Populus tremula L. × P. tremuloides Michx.) stands in a Free Air Humidity Manipulation (FAHM) experimental facility containing three humidified (H; on average 7% above current ambient levels since 2008) and three control (C) plots. Soil respiration rates were measured monthly during the growing season using a closed dynamic chamber method. Density fractionation was adopted to separate SOM into two light fractions (free and aggregate-occluded particulate organic matter, fPOM and oPOM respectively), and one heavy fraction (mineral-associated organic matter, MOM). The fine root and rhizome biomass and microbial data are presented for silver birch stands only. In 2011, after 4 growing seasons of humidity manipulation soil organic carbon contents were significantly higher in C plots than H plot (13.5 and 12.5 g C kg-1, respectively), while soil respiration tended to be higher in the latter. Microbial biomass and basal respiration were 13 and 14% higher in H plots than in the C plots, respectively. Twice more fine roots of trees were estimated in H plots, while the total fine root and rhizome biomass (tree + understory) was similar in C and H plots. Fine root turnover was higher for both silver birch and understory roots in H plots. Labile SOM light fractions (fPOM and oPOM) were significantly smaller in H plots with respect to C plots (silver birch and hybrid aspen stands together), whereas no differences were observed in the

  14. Stand-scale correspondence in empirical and simulated labile carbohydrates in loblolly pine

    Treesearch

    David A. Sampson; Kurt H. Johnsen; Kim H. Ludovici; Timothy J. Albaugh; Chris A. Maier

    2001-01-01

    As investment into intensive forestry increases, the potential trade-offs between productivity and sustainability should be scrutinized. Because of their important role in internal carbon (C) budgets, labile C pools may provide a measure of the potential ability of trees and stands to respond to stress. We modified the process model BIOMASS to...

  15. Transformation of metals speciation in a combined landfill leachate treatment.

    PubMed

    Wu, Yanyu; Zhou, Shaoqi; Chen, Dongyu; Zhao, Rong; Li, Huosheng; Lin, Yiming

    2011-04-01

    Landfill leachate was treated by a combined sequential batch reactor (SBR), coagulation, Fenton oxidation and biological aerated filter (BAF) technology. The metals in treatment process were fractionated into three fractions: particulate and colloidal (size charge filtration), free ion/labile (cation exchange) and non-labile fractions. Fifty percent to 66% Cu, Ni, Zn, Mn, Pb and Cd were present as particulate/colloidal matter in raw leachate, whereas Cr was present 94.9% as non-labile complexes. The free ion/labile fractions of Ni, Zn, Mg, Mn, Pb and Cd increased significantly after treatment except Cr. Fifty-nine percent to 100% of Al was present mainly as particulate/colloidal matter >0.45 μm and the remaining portions were predicted as non-labile complexes except in coagulation effluent. The speciation of Fe varied significantly in various individual processes. Visual MINTEQ simulation showed that 95-100% colloidal species for Cu, Cd and Pb were present as metal-humic complexes even with the lower dissolved organic carbon. Optimum agreements for the free ion/labile species were within acidic solution, whereas under-estimated in alkaline effluents. Overestimated particulate/colloidal fraction consisted with the hypothesis that a portion of colloids in fraction <0.45 μm were considered as dissolved. Copyright © 2011 Elsevier B.V. All rights reserved.

  16. In vivo bioluminescence imaging of labile iron accumulation in a murine model of Acinetobacter baumannii infection.

    PubMed

    Aron, Allegra T; Heffern, Marie C; Lonergan, Zachery R; Vander Wal, Mark N; Blank, Brian R; Spangler, Benjamin; Zhang, Yaofang; Park, Hyo Min; Stahl, Andreas; Renslo, Adam R; Skaar, Eric P; Chang, Christopher J

    2017-11-28

    Iron is an essential metal for all organisms, yet disruption of its homeostasis, particularly in labile forms that can contribute to oxidative stress, is connected to diseases ranging from infection to cancer to neurodegeneration. Iron deficiency is also among the most common nutritional deficiencies worldwide. To advance studies of iron in healthy and disease states, we now report the synthesis and characterization of iron-caged luciferin-1 (ICL-1), a bioluminescent probe that enables longitudinal monitoring of labile iron pools (LIPs) in living animals. ICL-1 utilizes a bioinspired endoperoxide trigger to release d-aminoluciferin for selective reactivity-based detection of Fe 2+ with metal and oxidation state specificity. The probe can detect physiological changes in labile Fe 2+ levels in live cells and mice experiencing iron deficiency or overload. Application of ICL-1 in a model of systemic bacterial infection reveals increased iron accumulation in infected tissues that accompany transcriptional changes consistent with elevations in both iron acquisition and retention. The ability to assess iron status in living animals provides a powerful technology for studying the contributions of iron metabolism to physiology and pathology.

  17. Affective lability and difficulties with regulation are differentially associated with amygdala and prefrontal response in women with Borderline Personality Disorder

    PubMed Central

    Silvers, Jennifer A.; Hubbard, Alexa D.; Biggs, Emily; Shu, Jocelyn; Fertuck, Eric; Chaudhury, Sadia; Grunebaum, Michael F.; Weber, Jochen; Kober, Hedy; Chesin, Megan; Brodsky, Beth S.; Koenigsberg, Harold; Ochsner, Kevin N.; Stanley, Barbara

    2016-01-01

    The present neuroimaging study investigated two aspects of difficulties with emotion associated with Borderline Personality Disorder (BPD1): affective lability and difficulty regulating emotion. While these two characteristics have been previously linked to BPD symptomology, it remains unknown whether individual differences in affective lability and emotion regulation difficulties are subserved by distinct neural substrates within a BPD sample. To address this issue, sixty women diagnosed with BPD were scanned while completing a task that assessed baseline emotional reactivity as well as top-down emotion regulation. More affective instability, as measured by the Affective Lability Scale (ALS2), positively correlated with greater amygdala responses on trials assessing emotional reactivity. Greater difficulties with regulating emotion, as measured by the Difficulties with Emotion Regulation Scale (DERS3), was negatively correlated with left inferior frontal gyrus (IFG4) recruitment on trials assessing regulatory ability. These findings suggest that, within a sample of individuals with BPD, greater bottom-up amygdala activity is associated with heightened affective lability. By contrast, difficulties with emotion regulation are related to reduced IFG recruitment during emotion regulation. These results point to distinct neural mechanisms for different aspects of BPD symptomology. PMID:27379614

  18. Effects of bottom water dissolved oxygen variability on copper and lead fractionation in the sediments across the oxygen minimum zone, western continental margin of India.

    PubMed

    Chakraborty, Parthasarathi; Chakraborty, Sucharita; Jayachandran, Saranya; Madan, Ritu; Sarkar, Arindam; Linsy, P; Nath, B Nagender

    2016-10-01

    This study describes the effect of varying bottom-water oxygen concentration on geochemical fractionation (operational speciation) of Cu and Pb in the underneath sediments across the oxygen minimum zone (Arabian Sea) in the west coast of India. Both, Cu and Pb were redistributed among the different binding phases of the sediments with changing dissolved oxygen level (from oxic to hypoxic and close to suboxic) in the bottom water. The average lability of Cu-sediment complexes gradually decreased (i.e., stability increased) with the decreasing dissolved oxygen concentrations of the bottom water. Decreasing bottom-water oxygen concentration increased Cu association with sedimentary organic matter. However, Pb association with Fe/Mn-oxyhydroxide phases in the sediments gradually decreased with the decreasing dissolved oxygen concentration of the overlying bottom water (due to dissolution of Fe/Mn oxyhydroxide phase). The lability of Pb-sediment complexes increased with the decreasing bottom-water oxygen concentration. This study suggests that bottom-water oxygen concentration is one of the key factors governing stability and lability of Cu and Pb complexes in the underneath sediment. Sedimentary organic matter and Fe/Mn oxyhydroxide binding phases were the major hosting phases for Cu and Pb respectively in the study area. Increasing lability of Pb-complexes in bottom sediments may lead to positive benthic fluxes of Pb at low oxygen environment. Copyright © 2016 Elsevier B.V. All rights reserved.

  19. Following The Money: Characterizing the Dynamics of Microbial Ecosystems and Labile Organic Matter in Grassland Soils

    NASA Astrophysics Data System (ADS)

    Herbert, B. E.; McNeal, K. S.

    2006-12-01

    The dynamics of soil microbial ecosystems and labile fractions of soil organic matter in grasslands have important implications for the response of these critical ecosystems to perturbations. Organic, inorganic and genetic biomarkers in the solid (e.g. lipids, microbial DNA), liquid (e.g. porewater ions) or gaseous phases (e.g. carbon dioxide) have been used to characterize carbon cycling and soil microbial ecology. These proxies are generally limited in the amount of temporal information that they can provide (i.e., solid-phase proxies) or the amount of specific information they can provide about carbon sources or microbial community processes (e.g. inorganic gases). It is the aim of this research to validate the use of soil volatile organic carbon emissions (VOCs) as useful indicators of subsurface microbial community shifts and processes as a function of ecosystem perturbations. We present results of method validation using laboratory microcosm, where VOC metabolites as characterized by gas chromatography and mass spectrometry (GC-MS), were related to other proxies including carbon dioxide (CO2) via infra-red technology, and microbial community shifts as measured by Biolog© and fatty acid methyl ester (FAME) techniques. Experiments with soil collected from grasslands along the coastal margin region in southern Texas were preformed where environmental factors such as soil water content, soil type, and charcoal content are manipulated. Results indicate that over fifty identifiable VOC metabolites are produced from the soils, where many (~15) can be direct indicators of microbial ecology. Principle component analysis (PCA) evidences these trends through similar cluster patterns for the VOC results, the Biolog© results, and FAME. Regression analysis further shows that VOCs are significant (p < 0.05) indicators of microbial stress. Our results are encouraging that characterizing VOCs production in grassland soils are easy to measure, relatively inexpensive method

  20. Using Self-Organizing Map (SOM) Clusters of Ozonesonde Profiles to Evaluate Climatologies and Create Linkages between Meteorology and Pollution

    NASA Astrophysics Data System (ADS)

    Stauffer, R. M.; Thompson, A. M.; Young, G. S.; Oltmans, S. J.; Johnson, B.

    2016-12-01

    Ozone (O3) climatologies are typically created by averaging ozonesonde profiles on a monthly or seasonal basis, either for specific regions or zonally. We demonstrate the advantages of using a statistical clustering technique, self-organizing maps (SOM), over this simple averaging, through analysis of more than 4500 sonde profiles taken from the long-term US sites at Boulder, CO; Huntsville, AL; Trinidad Head, CA; and Wallops Island, VA. First, we apply SOM to O3 mixing ratios from surface to 12 km amsl. At all four sites, profiles in SOM clusters exhibit similar tropopause height, 500 hPa height and temperature, and total and tropospheric column O3. Second, when profiles from each SOM cluster are compared to monthly O3 means, near-tropopause O3 in three of the clusters is double (over +100 ppbv) the climatological O3 mixing ratio. The three clusters include 13-16% of all profiles, mostly from winter and spring. Large mid-tropospheric deviations from monthly means are found in two highly-populated clusters that represent either distinctly polluted (summer) or clean O3 (fall-winter, high tropopause) profiles. Thus, SOM indeed appear to represent US O3 profile statistics better than conventional climatologies. In the case of Trinidad Head, SOM clusters of O3 profile data from the lower troposphere (surface-6 km amsl) can discriminate background vs polluted O3 and the meteorology associated with each. Two of nine O3 clusters exhibit thin layers ( 100s of m thick) of high O3, typically between 1 and 4 km. Comparisons between clusters and downwind, high-altitude surface O3 measurements display a marked impact of the elevated tropospheric O­­3. Days corresponding to the high O3 clusters exhibit hourly surface O3 anomalies at surface sites of +5 -10 ppbv compared to a climatology; the anomalies can last up to four days. We also explore applications of SOM to tropical ozonesonde profiles, where tropospheric O3 variability is generally smaller.

  1. Preliminary results on the influence of mineralogy on the turnover rates of SOM from different Hungarian soils

    NASA Astrophysics Data System (ADS)

    Zacháry, Dóra; Szalai, Zoltán; Jakab, Gergely; Németh, Tibor; Sipos, Péter; Filep, Tibor

    2016-04-01

    Fine textured soils generally considered containing more microbial biomass, and having a lower rate of biomass turnover and organic matter decomposition than coarse textured soils. In spite of this, several recent studies have shown contradicting trends. For example, the relative importance of different clay minerals for stabilizing SOM remains an open question. The aim of this study is to evaluate soil mineralological effect on the turnover of SOM by identifying and quantifying soil phyllosilicates. Our samples are derived from C3 forests and C3 croplands from different sites of Hungary. C4 maize residues are added to the soils in order to get natural 13C enrichment as tracer for the young carbon. Bulk samples of the soils from 0 to 20 cm depth were collected. The samples were dried at room temperature and preincubated in the dark for 4 months at 20 °C. The basic soil properties (pH, cation exchange capacity) were analysed after 2 mm sieving and homogenization. The amount of total C and N in the soils and maize residues were analysed using NDIR-chemiluminescent analyzer (Tekmar Dohrman Apollo 9000N). Particle size distribution was determined by laser diffraction (Fritsch Analysette MicroTec 22 plus) and particle imaging method (Malvern Morphologi G3-ID). The mineralological composition of the samples was determined by X-ray diffraction (Philips PW 1730 X-ray diffractometer). Moist soil equivalent to 400 g dry soil mixed with 2 g maize leaves is kept in air tight glass chambers for 183 days at 20°C. The leaves had previously been dried at 60 °C, were cut into pieces and sieved through a 2 mm mesh. The evolved CO2 is trapped by 10 mL 2 M NaOH, which is exchanged on day 1, 3, 5, 7, 10, 14, 21, 28 and subsequently every 31 days. The fractional abundance of 13C of the soils, the plant material and the evolved CO2 is measured with isotope ratio mass spectrometer (Thermo Scientific Delta V IRMS). Our work show the preliminary results on the link between phyllosilicate

  2. Feasibility of labile Zn phytoextraction using enhanced tobacco and sunflower: results of five- and one-year field-scale experiments in Switzerland.

    PubMed

    Herzig, Rolf; Nehnevajova, Erika; Pfistner, Charlotte; Schwitzguebel, Jean-Paul; Ricci, Arturo; Keller, Charles

    2014-01-01

    Phytoextraction with somaclonal variants of tobacco and sunflower mutant lines (non-GMs) with enhanced metal uptake and tolerance can be a sustainable alternative to conventional destructive decontamination methods, especially for stripping bioavailable zinc excess in topsoil. The overall results of a 5-year time series experiment at field scale in north-eastern Switzerland confirm that the labile Zn pool in soil can be lowered by 45-70%, whereas subplots without phytoextraction treatment maintained labile Zn concentrations. In 2011, the phytoextraction experiment site was enlarged by a factor of 3, and the labile 0.1 M NaNO3 extractable Zn concentration in the soil was reduced up to 58% one period after harvest. A Mass Balance Analysis confirmed soil Zn decontamination in line with plant Zn uptake. The plants partially take Zn from the non-labile pool of the totaL The sustainability of Zn phytoextraction in subplots that no longer exceed the Swiss trigger value is now assessed over time. In contrary to the phytoextraction of total soil Zn which needs a long cleaning up time, the bioavailable Zn stripping is feasible within a few years period.

  3. Lability of Secondary Organic Particulate Matter

    DOE PAGES

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; ...

    2016-10-24

    Accurate simulations of the consenctrations of atmospheric organic particulate matter (PM) are needed for predicting energy flow in the Earth’s climate system. In the past, simulations of organic PM widely assume equilibrium partitioning of semivolatile organic compounds (SVOCs) between the PM and surrounding vapor. Herein, we test this assumption by measuring evaporation rates and associated vapor mass concentration of organic films representative of atmospheric PM. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH), indicating equilibrium partitioning above a transition RH but not below. In contrast for films representing biogenic PM,more » no threshold was observed, indicating equilibrium partitioning at all RHs. The results suggest that the mass lability of atmospheric organic PM can differ in consequential ways among Earth’s natural biomes, polluted regions, and regions of land-use change, and these differences need to be considered when simulating atmospheric organic PM.« less

  4. The role of labile sulfur compounds in thermochemical sulfate reduction

    USGS Publications Warehouse

    Amrani, A.; Zhang, T.; Ma, Q.; Ellis, G.S.; Tang, Y.

    2008-01-01

    The reduction of sulfate to sulfide coupled with the oxidation of hydrocarbons to carbon dioxide, commonly referred to as thermochemical sulfate reduction (TSR), is an important abiotic alteration process that most commonly occurs in hot carbonate petroleum reservoirs. In the present study we focus on the role that organic labile sulfur compounds play in increasing the rate of TSR. A series of gold-tube hydrous pyrolysis experiments were conducted with n-octane and CaSO4 in the presence of reduced sulfur (e.g. H2S, S??, organic S) at temperatures of 330 and 356 ??C under a constant confining pressure. The in-situ pH was buffered to 3.5 (???6.3 at room temperature) with talc and silica. For comparison, three types of oil with different total S and labile S contents were reacted under similar conditions. The results show that the initial presence of organic or inorganic sulfur compounds increases the rate of TSR. However, organic sulfur compounds, such as 1-pentanethiol or diethyldisulfide, were significantly more effective in increasing the rate of TSR than H2S or elemental sulfur (on a mole S basis). The increase in rate is achieved at relatively low concentrations of 1-pentanethiol, less than 1 wt% of the total n-octane, which is comparable to the concentration of organic S that is common in many oils (???0.3 wt%). We examined several potential reaction mechanisms to explain the observed reactivity of organic LSC. First, the release of H2S from the thermal degradation of thiols was discounted as an important mechanism due to the significantly greater reactivity of thiol compared to an equivalent amount of H2S. Second, we considered the generation of olefines in association with the elimination of H2S during thermal degradation of thiols because olefines are much more reactive than n-alkanes during TSR. In our experiments, olefines increased the rate of TSR, but were less effective than 1-pentanethiol and other organic LSC. Third, the thermal decomposition of

  5. The role of labile sulfur compounds in thermochemical sulfate reduction

    NASA Astrophysics Data System (ADS)

    Amrani, Alon; Zhang, Tongwei; Ma, Qisheng; Ellis, Geoffrey S.; Tang, Yongchun

    2008-06-01

    The reduction of sulfate to sulfide coupled with the oxidation of hydrocarbons to carbon dioxide, commonly referred to as thermochemical sulfate reduction (TSR), is an important abiotic alteration process that most commonly occurs in hot carbonate petroleum reservoirs. In the present study we focus on the role that organic labile sulfur compounds play in increasing the rate of TSR. A series of gold-tube hydrous pyrolysis experiments were conducted with n-octane and CaSO4 in the presence of reduced sulfur (e.g. H2S, S°, organic S) at temperatures of 330 and 356 °C under a constant confining pressure. The in-situ pH was buffered to 3.5 (∼6.3 at room temperature) with talc and silica. For comparison, three types of oil with different total S and labile S contents were reacted under similar conditions. The results show that the initial presence of organic or inorganic sulfur compounds increases the rate of TSR. However, organic sulfur compounds, such as 1-pentanethiol or diethyldisulfide, were significantly more effective in increasing the rate of TSR than H2S or elemental sulfur (on a mole S basis). The increase in rate is achieved at relatively low concentrations of 1-pentanethiol, less than 1 wt% of the total n-octane, which is comparable to the concentration of organic S that is common in many oils (∼0.3 wt%). We examined several potential reaction mechanisms to explain the observed reactivity of organic LSC. First, the release of H2S from the thermal degradation of thiols was discounted as an important mechanism due to the significantly greater reactivity of thiol compared to an equivalent amount of H2S. Second, we considered the generation of olefines in association with the elimination of H2S during thermal degradation of thiols because olefines are much more reactive than n-alkanes during TSR. In our experiments, olefines increased the rate of TSR, but were less effective than 1-pentanethiol and other organic LSC. Third, the thermal decomposition of

  6. Total organic carbon and humus fractions in restored soils from limestone quarries in semiarid climate, SE Spain

    NASA Astrophysics Data System (ADS)

    Luna Ramos, Lourdes; Miralles Mellado, Isabel; Ángel Domene Ruiz, Miguel; Solé Benet, Albert

    2016-04-01

    Mining activities generate erosion and loss of plant cover and soil organic matter (SOM), especially in arid and semiarid Mediterranean regions. A precondition for ecosystem restoration in such highly disturbed areas is the development of functional soils with sufficient organic matter. But the SOM quality is also important to long-term C stabilization. The resistance to biodegradation of recalcitrant organic matter fractions has been reported to depend on some intrinsic structural factors of humic acid substances and formation of amorphous organo-mineral recalcitrant complexes. In an experimental soil restoration in limestone quarries in the Sierra de Gádor (Almería), SE Spain, several combinations of organic amendments (sewage sludge and compost from domestic organic waste) and mulches (gravel and woodchip) were added in experimental plots using a factorial design. In each plot, 75 native plants (Anthyllis cytisoides, A. terniflora and Macrochloa tenacissima) were planted and five years after the start of the experiment total organic carbon (TOC), physico-chemical soil properties and organic C fractions (particulate organic matter, H3PO4-fulvic fraction, fulvic acids (FA), humic acids (HA) and humin) were analyzed. We observed significant differences between treatments related to the TOC content and the HA/FA ratio. Compost amendments increased the TOC, HA content and HA/FA ratio, even higher than in natural undisturbed soils, indicating an effective clay humus-complex pointing to progressively increasing organic matter quality. Soils with sewage sludge showed the lowest TOC and HA/FA ratio and accumulated a lower HA proportion indicating poorer organic matter quality and comparatively lower resilience than in natural soils and soils amended with compost.

  7. Suppression of inflammation in a mouse model of rheumatoid arthritis using targeted lipase-labile fumagillin prodrug nanoparticles.

    PubMed

    Zhou, Hui-Fang; Yan, Huimin; Senpan, Angana; Wickline, Samuel A; Pan, Dipanjan; Lanza, Gregory M; Pham, Christine T N

    2012-11-01

    Nanoparticle-based therapeutics are emerging technologies that have the potential to greatly impact the treatment of many human diseases. However, drug instability and premature release from the nanoparticles during circulation currently preclude clinical translation. Herein, we use a lipase-labile (Sn 2) fumagillin prodrug platform coupled with a unique lipid surface-to-surface targeted delivery mechanism, termed contact-facilitated drug delivery, to counter the premature drug release and overcome the inherent photo-instability of fumagillin, an established anti-angiogenic agent. We show that α(v)β(3)-integrin targeted fumagillin prodrug nanoparticles, administered at 0.3 mg of fumagillin prodrug/kg of body weight suppress the clinical disease indices of KRN serum-mediated arthritis in a dose-dependent manner when compared to treatment with the control nanoparticles with no drug. This study demonstrates the effectiveness of this lipase-labile prodrug nanocarrier in a relevant preclinical model that approximates human rheumatoid arthritis. The lipase-labile prodrug paradigm offers a translatable approach that is broadly applicable to many targeted nanosystems and increases the translational potential of this platform for many diseases. Copyright © 2012 Elsevier Ltd. All rights reserved.

  8. Labile pools of Pb in vegetable-growing soils investigated by an isotope dilution method and its influence on soil pH.

    PubMed

    Xie, Hong; Huang, Zhi-Yong; Cao, Ying-Lan; Cai, Chao; Zeng, Xiang-Cheng; Li, Jian

    2012-08-01

    Pollution of Pb in the surface of agricultural soils is of increasing concern due to its serious impact on the plant growth and the human health through the food chain. However, the mobility, activity and bioavailability of Pb rely mainly on its various chemical species in soils. In the present study, E and L values, the labile pools of isotopically exchangeable Pb, were estimated using the method of isotope dilution in three vegetable-growing soils. The experiments involved adding a stable enriched isotope ((206)Pb > 96%) to a soil suspension and to soils in which plants are subsequently grown, the labile pools of Pb were then estimated by measuring the isotopic composition of Pb in soil solutions and in the plant tissues, respectively. In addition, the correlation of E values and soil pH was investigated at the ranges of pH 4.5-7.0. The amount of labile Pb in soils was also estimated using different single chemical extractants and a modified BCR approach. The results showed that after spiking the enriched isotopes of (206)Pb (>96%) for 24 hours an equilibration of isotopic exchanges in soil suspensions was achieved, and the isotope ratios of (208)Pb/(206)Pb measured at that time was used for calculating the E(24 h) values. The labile pools of Pb by %E(24 h) values, ranging from 53.2% to 61.7% with an average 57%, were found to be significantly higher (p < 0.05) than the values estimated with L values, single chemical extractants and the Σ(BCR) values obtained with the BCR approach, respectively. A strong negative correlation (R(2) = 0.984) between E(24 h) values and soil pH was found in the tested soil sample. The results indicate that the %E(24 h) value can more rapidly and easily predict the labile pools of Pb in soils compared with L values, but it might be readily overestimated because of the artificial soil acidity derived from the spiked isotopic tracer and the excess of spiked enriched isotopes. The results also suggest that the amounts of Pb extracted

  9. Spatial Heterogeneity of SOM Concentrations Associated with White-rot Versus Brown-rot Wood Decay.

    PubMed

    Bai, Zhen; Ma, Qiang; Dai, Yucheng; Yuan, Haisheng; Ye, Ji; Yu, Wantai

    2017-10-23

    White- and brown-rot fungal decay via distinct pathways imparts characteristic molecular imprints on decomposing wood. However, the effect that a specific wood-rotting type of fungus has on proximal soil organic matter (SOM) accumulation remains unexplored. We investigated the potential influence of white- and brown-rot fungi-decayed Abies nephrolepis logs on forest SOM stocks (i.e., soil total carbon (C) and nitrogen (N)) and the concentrations of amino sugars (microbial necromass) at different depths and horizontal distances from decaying woody debris. The brown-rot fungal wood decay resulted in higher concentrations of soil C and N and a greater increase in microbial necromass (i.e., 1.3- to 1.7-fold greater) than the white-rot fungal wood decay. The white-rot sets were accompanied by significant differences in the proportions of the bacterial residue index (muramic acid%) with soil depth; however, the brown-rot-associated soils showed complementary shifts, primarily in fungal necromass, across horizontal distances. Soil C and N concentrations were significantly correlated with fungal rather than bacterial necromass in the brown-rot systems. Our findings confirmed that the brown-rot fungi-dominated degradation of lignocellulosic residues resulted in a greater SOM buildup than the white-rot fungi-dominated degradation.

  10. Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests.

    PubMed

    Cusack, Daniela F; Silver, Whendee L; Torn, Margaret S; Burton, Sarah D; Firestone, Mary K

    2011-03-01

    Microbial communities and their associated enzyme activities affect the amount and chemical quality of carbon (C) in soils. Increasing nitrogen (N) deposition, particularly in N-rich tropical forests, is likely to change the composition and behavior of microbial communities and feed back on ecosystem structure and function. This study presents a novel assessment of mechanistic links between microbial responses to N deposition and shifts in soil organic matter (SOM) quality and quantity. We used phospholipid fatty acid (PLFA) analysis and microbial enzyme assays in soils to assess microbial community responses to long-term N additions in two distinct tropical rain forests. We used soil density fractionation and 13C nuclear magnetic resonance (NMR) spectroscopy to measure related changes in SOM pool sizes and chemical quality. Microbial biomass increased in response to N fertilization in both tropical forests and corresponded to declines in pools of low-density SOM. The chemical quality of this soil C pool reflected ecosystem-specific changes in microbial community composition. In the lower-elevation forest, there was an increase in gram-negative bacteria PLFA biomass, and there were significant losses of labile C chemical groups (O-alkyls). In contrast, the upper-elevation tropical forest had an increase in fungal PLFAs with N additions and declines in C groups associated with increased soil C storage (alkyls). The dynamics of microbial enzymatic activities with N addition provided a functional link between changes in microbial community structure and SOM chemistry. Ecosystem-specific changes in microbial community composition are likely to have far-reaching effects on soil carbon storage and cycling. This study indicates that microbial communities in N-rich tropical forests can be sensitive to added N, but we can expect significant variability in how ecosystem structure and function respond to N deposition among tropical forest types.

  11. Labile Dissolved Organic Carbon Availability Controls Hyporheic Denitrification: a 15N Tracer Study

    NASA Astrophysics Data System (ADS)

    Zarnetske, J. P.; Haggerty, R.; Wondzell, S. M.; Baker, M. A.

    2009-12-01

    We used an in situ 15N-labeled nitrate (15NO3-) and acetate injection experiment to determine how the availability of labile dissolved organic carbon (DOC) as acetate influences microbial denitrification in the hyporheic zone (HZ) of an upland (3rd-order) agricultural stream. A 48 h steady-state injection of a conservative tracer, chloride, and 15NO3- was used to quantify ambient HZ denitrification via 15N2 production. Following ambient plateau measurements of denitrification during the first 24 h, a second conservative tracer, bromide, and labile DOC source, acetate, were co-injected for an additional 24 h to measure HZ denitrification under increased DOC supply. Conservative tracers were observed at 4 of the 6 down gradient wells. Receiving wells represented HZ median residence times of 7.0 to 13.1 h, nominal flowpath lengths of 0.7 to 3.7 m, and hypoxic conditions (7.5 to 9.3 mg-O2 L-1 deficit). All 4 receiving wells demonstrated 15N2 production during ambient conditions indicating that the HZ was an active denitrification environment. Acetate addition stimulated significant increases in 15N2 production by factors of 2.7 to 26.1 in all receiving wells, and significant decreases of NO3- and DOC aromaticity (via SUVA254) in the two wells most hydrologically connected to the injection. In all receiving wells, increases of bromide and 15N2 production occurred without concurrent increases in acetate indicating that 100% of acetate was retained in the HZ, a portion of which is due to biological consumption. These results support our hypothesis that microbial denitrification in anaerobic portions of the hyporheic zone is limited by labile DOC supply.

  12. Immunogenic Activity of a Ribosomal Fraction Obtained from Mycobacterium tuberculosis

    PubMed Central

    Youmans, Anne S.; Youmans, Guy P.

    1965-01-01

    chloride. Again, immunogenicity was greatly reduced but was fully restored by use of Freund's incomplete adjuvant. The data suggest, then, that the immunizing component of the particulate fraction is a substance (ribosomal?) which sediments at 144,000 × g, but for maximal immunizing activity a labile, possibly membranous, moiety of the mycobacterial cell, which has the properties of an adjuvant, is required. PMID:14293000

  13. Novel diffusive gradients in thin films technique to assess labile sulfate in soil.

    PubMed

    Hanousek, Ondrej; Mason, Sean; Santner, Jakob; Chowdhury, Md Mobaroqul Ahsan; Berger, Torsten W; Prohaska, Thomas

    2016-09-01

    A novel diffusive gradients in thin films (DGT) technique for sampling labile soil sulfate was developed, based on a strong basic anion exchange resin (Amberlite IRA-400) for sulfate immobilization on the binding gel. For reducing the sulfate background on the resin gels, photopolymerization was applied instead of ammonium persulfate-induced polymerization. Agarose cross-linked polyacrylamide (APA) hydrogels were used as diffusive layer. The sulfate diffusion coefficient in APA gel was determined as 9.83 × 10(-6) ± 0.35 × 10(-6) cm(2) s(-1) at 25 °C. The accumulated sulfate was eluted in 1 mol L(-1) HNO3 with a recovery of 90.9 ± 1.6 %. The developed method was tested against two standard extraction methods for soil sulfate measurement. The obtained low correlation coefficients indicate that DGT and conventional soil test methods assess differential soil sulfate pools, rendering DGT a potentially important tool for measuring labile soil sulfate.

  14. Evolutionary lability of a complex life cycle in the aphid genus Brachycaudus.

    PubMed

    Emmanuelle, Jousselin; Gwenaelle, Genson; Armelle, Coeur d'acier

    2010-09-28

    Most aphid species complete their life cycle on the same set of host-plant species, but some (heteroecious species) alternate between different hosts, migrating from primary (woody) to secondary (herbaceous) host plants. The evolutionary processes behind the evolution of this complex life cycle have often been debated. One widely accepted scenario is that heteroecy evolved from monoecy on woody host plants. Several shifts towards monoecy on herbaceous plants have subsequently occurred and resulted in the radiation of aphids. Host alternation would have persisted in some cases due to developmental constraints preventing aphids from shifting their entire life cycle to herbaceous hosts (which are thought to be more favourable). According to this scenario, if aphids lose their primary host during evolution they should not regain it. The genus Brachycaudus includes species with all the types of life cycle (monoecy on woody plants, heteroecy, monoecy on herbs). We used this genus to test hypotheses concerning the evolution of life cycles in aphids. Phylogenetic investigation and character reconstruction suggest that life cycle is evolutionary labile in the genus. Though ancestral character states can be ambiguous depending on optimization methods, all analyses suggest that transitions from monoecy on herbs towards heteroecy have occurred several times. Transitions from heteroecy towards monoecy, are also likely. There have been many shifts in feeding behaviour but we found no significant correlation between life cycle changes and changes in diet. The transitions from monoecy on herbs towards heteroecy observed in this study go against a widely accepted evolutionary scenario: aphids in the genus Brachycaudus seem to be able to recapture their supposedly ancestral woody host. This suggests that the determinants of host alternation are probably not as complicated as previously thought. Definitive proofs of the lability of life cycle in Brachycaudus will necessitate

  15. Orbitrap-MS and FT-ICR-MS of Free and Labile Organic Matter from Carbonaceous Chondrites

    NASA Astrophysics Data System (ADS)

    Orthous-Daunay, F.-R.; Thissen, R.; Vuitton, V.; Somogyi, A.; Mespoulede, M.; Beck, P.; Bonnet, J.-Y.; Dutuit, O.; Schmitt, B.; Quirico, E.

    2011-03-01

    We used two types of high-resolution FT-MS to analyze the free and labile organic matter in carbonaceous chondrites of type 1 and 2. The methanol extraction and laser desorption gave access to highly and poorly functionalized molecules respectively.

  16. Chemical characterization of soil organic matter in a Chesapeake Bay salt marsh: analyzing microbial and vegetation inputs to SOM

    NASA Astrophysics Data System (ADS)

    Bye, E.; Schreiner, K. M.; Abdulla, H. A.; Minor, E. C.; Guntenspergen, G. R.

    2017-12-01

    Coastal wetlands play a critical role in the global carbon cycle. These ecosystems sequester and store carbon, known as "blue carbon," at a rate two or three orders of magnitude larger than other terrestrial ecosystems, such as temperate, tropical, and boreal forests. Anthropogenic changes to the climate are threatening blue carbon stores in coastal wetland ecosystems. To understand and predict how these important carbon stores will be affected by anthropogenic climate changes, it is necessary to understand the formation and preservation of soil organic matter (SOM) in these ecosystems. This study will present organic geochemical data from two sediment cores collected from the Smithsonian Environmental Research Center site on a salt marsh in Maryland along the Chesapeake Bay. One core is from a location that recently transitioned from a C4 to C3 plant regime, currently dominated by the sedge Shoenplectis americanus. The second core is from a C4 plant (Spartina patens) dominated location in the marsh. The organic geochemistry of these 100 cm deep sediment cores was studied through multiple bulk analyses including stable isotopes, elemental ratios, Fourier-transform infrared spectroscopy (FTIR), solid-state magic-angle-spinning Nuclear Magnetic Resonance (NMR), and compound specific lignin-phenol analysis. By using comprehensive chemical characterization techniques, this study aims to discern between vegetation- and microbially-derived inputs to SOM in blue carbon ecosystems. The results show a general increase in the aromatic content with a concomitant decrease of carbohydrates with depth in both cores. However, substantial differences between the two cores, indicates differing inputs and/or stabilization mechanisms within SOM formed from different vegetation regimes. Further compound specific work will help to elucidate the specific source of compounds within each compound class, in surface and deep SOM, and additionally can help provide evidence for different

  17. Litter type control on soil C and N stabilization dynamics in a temperate forest.

    PubMed

    Hatton, Pierre-Joseph; Castanha, Cristina; Torn, Margaret S; Bird, Jeffrey A

    2015-03-01

    While plant litters are the main source of soil organic matter (SOM) in forests, the controllers and pathways to stable SOM formation remain unclear. Here, we address how litter type ((13) C/(15) N-labeled needles vs. fine roots) and placement-depth (O vs. A horizon) affect in situ C and N dynamics in a temperate forest soil after 5 years. Litter type rather than placement-depth controlled soil C and N retention after 5 years in situ, with belowground fine root inputs greatly enhancing soil C (x1.4) and N (x1.2) retention compared with aboveground needles. While the proportions of added needle and fine root-derived C and N recovered into stable SOM fractions were similar, they followed different transformation pathways into stable SOM fractions: fine root transfer was slower than for needles, but proportionally more of the remaining needle-derived C and N was transferred into stable SOM fractions. The stoichiometry of litter-derived C vs. N within individual SOM fractions revealed the presence at least two pools of different turnover times (per SOM fraction) and emphasized the role of N-rich compounds for long-term persistence. Finally, a regression approach suggested that models may underestimate soil C retention from litter with fast decomposition rates. © 2014 John Wiley & Sons Ltd.

  18. Hydroxytyrosol inhibits hydrogen peroxide-induced apoptotic signaling via labile iron chelation.

    PubMed

    Kitsati, Natalia; Mantzaris, Michalis D; Galaris, Dimitrios

    2016-12-01

    Although it is known that Mediterranean diet plays an important role in maintaining human health, the underlying molecular mechanisms remain largely unknown. The aim of this investigation was to elucidate the potential role of ortho-dihydroxy group containing natural compounds in H 2 O 2 -induced DNA damage and apoptosis. For this purpose, the main phenolic alcohols of olive oil, namely hydroxytyrosol and tyrosol, were examined for their ability to protect cultured cells under conditions of oxidative stress. A strong correlation was observed between the ability of hydroxytyrosol to mitigate intracellular labile iron level and the protection offered against H 2 O 2 -induced DNA damage and apoptosis. On the other hand, tyrosol, which lacks the ortho-dihydroxy group, was ineffective. Moreover, hydroxytyrosol (but not tyrosol), was able to diminish the late sustained phase of H 2 O 2 -induced JNK and p38 phosphorylation. The derangement of intracellular iron homeostasis, following exposure of cells to H 2 O 2 , played pivotal role both in the induction of DNA damage and the initiation of apoptotic signaling. The presented results suggest that the protective effects exerted by ortho-dihydroxy group containing dietary compounds against oxidative stress-induced cell damage are linked to their ability to influence changes in the intracellular labile iron homeostasis. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

  19. Study on the distribution of organic carbon in soil fractions and its reaction potential of binding the pesticides

    NASA Astrophysics Data System (ADS)

    Chowdhury, Ashim

    2010-05-01

    STUDY ON THE DISTRIBUTION OF ORGANIC CARBON IN SOIL FRACTIONS AND ITS REACTION POTENTIAL OF BINDING THE PESTICIDES **SUMITRA ROY1, SANKHAJIT ROY1, *ASHIM CHOWDHURY2, SASWATI PRADHAN2 and PETER BURAUEL3 1Department of Agricultural Chemicals, Bidhan Chandra Krishi Viswavidyalay, Mohanpur, West Bengal, India. 2Department of Agricultural Chemistry and Soil Science, University of Calcutta, West Bengal, India. 3Institute of Chemical Dynamics & Geosphere, FZ-Juelich, Germany. *Correspondence: ashimkly@hotmail.com **Research work carried out as DAAD Sandwich research fellow at FZ- Juelich, Germany Soil is the ultimate sink of all selectively applied pesticides. In addition to the basic physicochemical data of an active ingredient, the fate of the various compounds is largely determined by the type of application. Finally, pesticide and their metabolites, as well as structural elements, remain in the native carbon reserves of the soil or are sorbed & fixed to clay minerals and clay- humus complexes. Soil organic matter (SOM) and the soil microbial community are the crucial components which regulate soil processes and contribute towards the stability of the soil ecosystem. It is an energy source for biological mineralization processes, functions as a buffer and participates in chemical reaction. Knowledge is essential to understand the extent to which the SOM influences the mobilization and immobilization processes of foreign substance in soil and the substance transport and pollutant decomposition in soil. The freshly incorporated organic matter undergoes mineralization and the non mineralized carbon fraction is of special relevance with respect to soil stability in general and decisive for the fate and particular the persistence of xenobiotics in soil. The biological and physicochemical interactions establishing equilibrium between the organic matter bound, fixed or complexed to the soil matrix and that dissolve in the soil solution must be understood in detail to realize

  20. Non-labile silver species in biosolids remain stable throughout 50 years of weathering and ageing.

    EPA Science Inventory

    Increasing commercial use of nanosilver has focussed attention on the fate of silver (Ag) in the wastewater release pathway. This paper reports the speciation and lability of Ag in archived, stockpiled, and contemporary biosolids from the UK, USA and Australia, and indicates that...

  1. Temperature responses of individual soil organic matter components

    NASA Astrophysics Data System (ADS)

    Feng, Xiaojuan; Simpson, Myrna J.

    2008-09-01

    Temperature responses of soil organic matter (SOM) remain unclear partly due to its chemical and compositional heterogeneity. In this study, the decomposition of SOM from two grassland soils was investigated in a 1-year laboratory incubation at six different temperatures. SOM was separated into solvent extractable compounds, suberin- and cutin-derived compounds, and lignin-derived monomers by solvent extraction, base hydrolysis, and CuO oxidation, respectively. These SOM components have distinct chemical structures and stabilities and their decomposition patterns over the course of the experiment were fitted with a two-pool exponential decay model. The stability of SOM components was also assessed using geochemical parameters and kinetic parameters derived from model fitting. Compared with the solvent extractable compounds, a low percentage of lignin monomers partitioned into the labile SOM pool. Suberin- and cutin-derived compounds were poorly fitted by the decay model, and their recalcitrance was shown by the geochemical degradation parameter (ω - C16/∑C16), which was observed to stabilize during the incubation. The temperature sensitivity of decomposition, expressed as Q10, was derived from the relationship between temperature and SOM decay rates. SOM components exhibited varying temperature responses and the decomposition of lignin monomers exhibited higher Q10 values than the decomposition of solvent extractable compounds. Our study shows that Q10 values derived from soil respiration measurements may not be reliable indicators of temperature responses of individual SOM components.

  2. From solid to liquid: Assessing the release of carbon from soil into solution in response to forest management

    NASA Astrophysics Data System (ADS)

    James, J. N.; Gross, C. D.; Butman, D. E.; Harrison, R. B.

    2016-12-01

    Dissolved organic matter (DOM) is a crucial conduit for internal cycling of carbon within soils as well as for the transfer of organic matter out of soil and into aquatic systems. Little is known about how the quantity, quality, lability and chemical characteristics of DOM changes in response to human management of forest soils. To examine the processes that release soil organic matter (SOM) into solution, we gathered samples from adjacent native and industrially managed Eucalyptus grandis plantation forests across Sao Paulo State, Brazil and from adjacent old-growth and Douglas-fir (Pseudotsuga menzisii) plantation forests in the coastal Pacific Northwest. Samples from each soil horizon were taken from soil profiles excavated to at least 1.5 m at each site. Water extractable organic matter (WEOM) was extracted twice from each sample using 0.5 M K2SO4 and Milli-Q water to quantify both dissolved and exchange phase organic matter. These extracts were measured for total organic carbon (TOC), 13C and 14C, and chemical characteristics were assessed by fluorescence spectroscopy (EEMs and SUVA254). At the same time, solid phase characteristics of the soil samples were quantified, including bulk density, pH, total carbon and nitrogen, microbial biomass, and 13C and 14C. Characterization of bulk SOM was undertaken by Fourier Transform Infrared Spectroscopy (FTIR) by subtracting mineral matrix spectra of each sample from the bulk spectra. Organic matter lability was assessed by incubations using difference in TOC for WEOM extracts and repeated measurement of CO2 efflux for bulk SOM. All together, these analyses permit a unique snapshot of the natural separation of organic matter from solid into liquid phase through the entire soil profile. Initial results reveal that small but measureable quantities of WEOM may be released from deep B and C horizons in soil, and that this material is labile to microbial decomposition. By identifying differences in SOM and DOM cycling due to

  3. Toward a new task assignment and path evolution (TAPE) for missile defense system (MDS) using intelligent adaptive SOM with recurrent neural networks (RNNs).

    PubMed

    Wang, Chi-Hsu; Chen, Chun-Yao; Hung, Kun-Neng

    2015-06-01

    In this paper, a new adaptive self-organizing map (SOM) with recurrent neural network (RNN) controller is proposed for task assignment and path evolution of missile defense system (MDS). We address the problem of N agents (defending missiles) and D targets (incoming missiles) in MDS. A new RNN controller is designed to force an agent (or defending missile) toward a target (or incoming missile), and a monitoring controller is also designed to reduce the error between RNN controller and ideal controller. A new SOM with RNN controller is then designed to dispatch agents to their corresponding targets by minimizing total damaging cost. This is actually an important application of the multiagent system. The SOM with RNN controller is the main controller. After task assignment, the weighting factors of our new SOM with RNN controller are activated to dispatch the agents toward their corresponding targets. Using the Lyapunov constraints, the weighting factors for the proposed SOM with RNN controller are updated to guarantee the stability of the path evolution (or planning) system. Excellent simulations are obtained using this new approach for MDS, which show that our RNN has the lowest average miss distance among the several techniques.

  4. Impact of labile metal nanoparticles on cellular homeostasis. Current developments in imaging, synthesis and applications.

    PubMed

    Chevallet, Mireille; Veronesi, Giulia; Fuchs, Alexandra; Mintz, Elisabeth; Michaud-Soret, Isabelle; Deniaud, Aurélien

    2017-06-01

    The use of nanomaterials is constantly increasing in electronics, cosmetics, food additives, and is emerging in advanced biomedical applications such as theranostics, bio-imaging and therapeutics. However their safety raises concerns and requires appropriate methods to analyze their fate in vivo. In this review, we describe the current knowledge about the toxicity of labile metal (ZnO, CuO and Ag) nanoparticles (NPs) both at the organism and cellular levels, and describe the pathways that are triggered to maintain cellular homeostasis. We also describe advanced elemental imaging approaches to analyze intracellular NP fate. Finally, we open the discussion by presenting recent developments in terms of synthesis and applications of Ag and CuO NPs. Labile metal nanoparticles (MeNPs) release metal ions that trigger a cellular response involving biomolecules binding to the ions followed by regulation of the redox balance. In addition, specific mechanisms are set up by the cell in response to physiological ions such as Cu(I) and Zn(II). Among all types of NPs, labile MeNPs induce the strongest inflammatory responses which are most probably due to the combined effects of the NPs and of its released ions. Interestingly, recent developments in imaging technologies enable the intracellular visualization of both the NPs and their ions and promise new insights into nanoparticle fate and toxicity. The exponential use of nanotechnologies associated with the difficulties of assessing their impact on health and the environment has prompted scientists to develop novel methodologies to characterize these nanoobjects in a biological context. Copyright © 2016 Elsevier B.V. All rights reserved.

  5. Contribution of microbial carbon to soil fractions: significance of diverse microbial group biochemistry

    NASA Astrophysics Data System (ADS)

    Throckmorton, H.; Bird, J. A.; Dane, L.; Firestone, M. K.; Horwath, W. R.

    2011-12-01

    The importance of diverse microbial groups to soil C maintenance is still a matter of debate. This study follows the turnover of 13C labeled nonliving residues from diverse microbial groups into soil physical fractions in situ in a temperate forest in California (CA) and a tropical forest in Puerto Rico (PR), during 5 sampling points per site- over a 3 and 2 year period, respectively. Microbial groups include fungi, actinomycetes, Gm(+) bacteria, and Gm(-) bacteria, isolated from CA and PR soils to obtain temperate and tropical isolates composited of 3-4 species per group. The selected density fractionation approach isolated: a "light fraction" (LF), non-mineral aggregate "occluded fraction" (OF), and a "mineral bound fraction" (MF). Pyrolysis gas chromatography mass spectrometry (Py-GC-MS) was employed to characterize microbial group isolates, whole soils, and fractions. Microbial isolates contained unique biochemical fingerprints: temperate and tropical fungi and tropical Gm(-) were characterized by a low abundance of phenol, benzene, and N-compounds compared with other microbial group isolates. Py-GC-MS revealed compositional differences among soil fractions at both sites, likely attributed to differences in the decomposition stage and C source material (ie. plant vs. microbial). For both sites, benzene and N-compounds were greatest in the MF; lignin and phenol compounds were greatest in the LF; and lipids were greatest in the OF. The trend for polysaccharides differed between sites, with the greatest concentration in the CA OF; and for PR with the lowest concentration in the OF, and similar concentrations in the LF and MF. SOM chemistry was most similar between sites in the LF, compared with the OF and MF, suggesting that differences in SOM chemistry between sites may be more attributed to differential decomposition processes than unique litter quality inputs. A substantial portion of microbial C moved from the LF into the OF, and the MF by the first sampling

  6. Acid-Labile Amphiphilic PEO-b-PPO-b-PEO Copolymers: Degradable Poloxamer Analogs.

    PubMed

    Worm, Matthias; Kang, Biao; Dingels, Carsten; Wurm, Frederik R; Frey, Holger

    2016-05-01

    Poly ((ethylene oxide)-b-(propylene oxide)-b-(ethylene oxide)) triblock copolymers commonly known as poloxamers or Pluronics constitute an important class of nonionic, biocompatible surfactants. Here, a method is reported to incorporate two acid-labile acetal moieties in the backbone of poloxamers to generate acid-cleavable nonionic surfactants. Poly(propylene oxide) is functionalized by means of an acetate-protected vinyl ether to introduce acetal units. Three cleavable PEO-PPO-PEO triblock copolymers (Mn,total = 6600, 8000, 9150 g·mol(-1) ; Mn,PEO = 2200, 3600, 4750 g·mol(-1) ) have been synthesized using anionic ring-opening polymerization. The amphiphilic copolymers exhibit narrow molecular weight distributions (Ð = 1.06-1.08). Surface tension measurements reveal surface-active behavior in aqueous solution comparable to established noncleavable poloxamers. Complete hydrolysis of the labile junctions after acidic treatment is verified by size exclusion chromatography. The block copolymers have been employed as surfactants in a miniemulsion polymerization to generate polystyrene (PS) nanoparticles with mean diameters of ≈200 nm and narrow size distribution, as determined by dynamic light scattering and scanning electron microscopy. Acid-triggered precipitation facilitates removal of surfactant fragments from the nanoparticles, which simplifies purification and enables nanoparticle precipitation "on demand." © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data.

    PubMed

    Van Gassen, Sofie; Callebaut, Britt; Van Helden, Mary J; Lambrecht, Bart N; Demeester, Piet; Dhaene, Tom; Saeys, Yvan

    2015-07-01

    The number of markers measured in both flow and mass cytometry keeps increasing steadily. Although this provides a wealth of information, it becomes infeasible to analyze these datasets manually. When using 2D scatter plots, the number of possible plots increases exponentially with the number of markers and therefore, relevant information that is present in the data might be missed. In this article, we introduce a new visualization technique, called FlowSOM, which analyzes Flow or mass cytometry data using a Self-Organizing Map. Using a two-level clustering and star charts, our algorithm helps to obtain a clear overview of how all markers are behaving on all cells, and to detect subsets that might be missed otherwise. R code is available at https://github.com/SofieVG/FlowSOM and will be made available at Bioconductor. © 2015 International Society for Advancement of Cytometry.

  8. The Influence of Land-Use Change on Soil and Dissolved Organic Matter Age, Lability, and Chemical Characteristics in Brazilian Oxisols

    NASA Astrophysics Data System (ADS)

    James, J. N.; Harrison, R. B.; Gross, C. D.; Dwivedi, P.; Myers, T.; Butman, D. E.

    2017-12-01

    Recent advances in freshwater research indicate that the age of carbon exported from major rivers globally increases with greater human disturbance in the watershed. This implies that human land-use can release old, previously mineral-associated C into solution with subsequent export to groundwater and ultimately freshwater systems where terrestrial organic matter is either mineralized to CO2, stored in aquatic sediments, or exported to the ocean. It is important to understand the mechanisms that cause the release of mineral-bound soil organic matter (SOM) into solution in response to human disturbance and land-use change. To better characterize the response of the total soil organic matter (SOM) pool to disturbance, this study examines the interactions between dissolved and bulk soil pools in response to conversion of Brazilian Cerrado (savannah forest) to Eucalyptus plantations. Water-extractable organic matter (WEOM) was obtained from soil samples down to 150 cm at 4 sites in Sao Paulo State, Brazil. These WEOM samples were characterized using fluorescence and NMR spectroscopy, incubated to assess biolability, and carbon-dated. Simultaneously, bulk mineral soil samples were analyzed for microbial biomass, carbon content and age, and characterized using Fourier Transform Infrared Spectroscopy. FTIR spectra of SOM were obtained by washing subsamples with sodium hypochlorite and subtracting the subsequent mineral matrix spectra from bulk soil spectra. Preliminary results show that microbial biomass decreases much more quickly with depth than WEOM, suggesting that C released into solution from deeper horizons may be less likely to be intercepted, and thus preferentially leached to groundwater. Native Cerrado forests had substantially more roots compared to Eucalyptus, and also released substantially larger quantities of WEOM from their O horizons. Furthermore, the age of WEOM released under Eucalyptus forest was more similar in age to bulk SOM, while Cerrado forest

  9. Bearing performance degradation assessment based on time-frequency code features and SOM network

    NASA Astrophysics Data System (ADS)

    Zhang, Yan; Tang, Baoping; Han, Yan; Deng, Lei

    2017-04-01

    Bearing performance degradation assessment and prognostics are extremely important in supporting maintenance decision and guaranteeing the system’s reliability. To achieve this goal, this paper proposes a novel feature extraction method for the degradation assessment and prognostics of bearings. Features of time-frequency codes (TFCs) are extracted from the time-frequency distribution using a hybrid procedure based on short-time Fourier transform (STFT) and non-negative matrix factorization (NMF) theory. An alternative way to design the health indicator is investigated by quantifying the similarity between feature vectors using a self-organizing map (SOM) network. On the basis of this idea, a new health indicator called time-frequency code quantification error (TFCQE) is proposed to assess the performance degradation of the bearing. This indicator is constructed based on the bearing real-time behavior and the SOM model that is previously trained with only the TFC vectors under the normal condition. Vibration signals collected from the bearing run-to-failure tests are used to validate the developed method. The comparison results demonstrate the superiority of the proposed TFCQE indicator over many other traditional features in terms of feature quality metrics, incipient degradation identification and achieving accurate prediction. Highlights • Time-frequency codes are extracted to reflect the signals’ characteristics. • SOM network served as a tool to quantify the similarity between feature vectors. • A new health indicator is proposed to demonstrate the whole stage of degradation development. • The method is useful for extracting the degradation features and detecting the incipient degradation. • The superiority of the proposed method is verified using experimental data.

  10. Abiotic Bromination of Soil Organic Matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Leri, Alessandra C.; Ravel, Bruce

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide andmore » assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.« less

  11. Abiotic Bromination of Soil Organic Matter.

    PubMed

    Leri, Alessandra C; Ravel, Bruce

    2015-11-17

    Biogeochemical transformations of plant-derived soil organic matter (SOM) involve complex abiotic and microbially mediated reactions. One such reaction is halogenation, which occurs naturally in the soil environment and has been associated with enzymatic activity of decomposer organisms. Building on a recent finding that naturally produced organobromine is ubiquitous in SOM, we hypothesized that inorganic bromide could be subject to abiotic oxidations resulting in bromination of SOM. Through lab-based degradation treatments of plant material and soil humus, we have shown that abiotic bromination of particulate organic matter occurs in the presence of a range of inorganic oxidants, including hydrogen peroxide and assorted forms of ferric iron, producing both aliphatic and aromatic forms of organobromine. Bromination of oak and pine litter is limited primarily by bromide concentration. Fresh plant material is more susceptible to bromination than decayed litter and soil humus, due to a labile pool of mainly aliphatic compounds that break down during early stages of SOM formation. As the first evidence of abiotic bromination of particulate SOM, this study identifies a mechanistic source of the natural organobromine in humic substances and the soil organic horizon. Formation of organobromine through oxidative treatments of plant material also provides insights into the relative stability of aromatic and aliphatic components of SOM.

  12. In situ visualisation and characterisation of the capacity of highly reactive minerals to preserve soil organic matter (SOM) in colloids at submicron scale.

    PubMed

    Xiao, Jian; Wen, Yongli; Li, Huan; Hao, Jialong; Shen, Qirong; Ran, Wei; Mei, Xinlan; He, Xinhua; Yu, Guanghui

    2015-11-01

    Mineral-organo associations (MOAs) are a mixture of identifiable biopolymers associated with highly reactive minerals and microorganisms. However, the in situ characterization and correlation between soil organic matter (SOM) and highly reactive Al and Fe minerals are still unclear for the lack of technologies, particularly in the long-term agricultural soil colloids at submicron scale. We combined several novel techniques, including nano-scale secondary ion mass spectrometry (NanoSIMS), X-ray absorption near edge structure (XANES) and confocal laser scanning microscopy (CLSM) to characterise the capacity of highly reactive Al and Fe minerals to preserve SOM in Ferralic Cambisol in south China. Our results demonstrated that: (1) highly reactive minerals were strongly related to SOM preservation, while SOM had a more significant line correlation with the highly reactive Al minerals than the highly reactive Fe minerals, according to the regions of interest correlation analyses using NanoSIMS; (2) allophane and ferrihydrite were the potential mineral species to determine the SOM preservation capability, which was evaluated by the X-ray photoelectron spectroscopy (XPS) and Fe K-edge XANES spectroscopy techniques; and (3) soil organic biopolymers with dominant compounds, such as proteins, polysaccharides and lipids, were distributed at the rough and clustered surface of MOAs with high chemical and spatial heterogeneity according to the CLSM observation. Our results also promoted the understanding of the roles played by the highly reactive Al and Fe minerals in the spatial distribution of soil organic biopolymers and SOM sequestration. Copyright © 2015 Elsevier Ltd. All rights reserved.

  13. Biogeochemistry of Decomposition and Detrital Processing

    NASA Astrophysics Data System (ADS)

    Sanderman, J.; Amundson, R.

    2003-12-01

    Decomposition is a key ecological process that roughly balances net primary production in terrestrial ecosystems and is an essential process in resupplying nutrients to the plant community. Decomposition consists of three concurrent processes: communition or fragmentation, leaching of water-soluble compounds, and microbial catabolism. Decomposition can also be viewed as a sequential process, what Eijsackers and Zehnder (1990) compare to a Russian matriochka doll. Soil macrofauna fragment and partially solubilize plant residues, facilitating establishment of a community of decomposer microorganisms. This decomposer community will gradually shift as the most easily degraded plant compounds are utilized and the more recalcitrant materials begin to accumulate. Given enough time and the proper environmental conditions, most naturally occurring compounds can completely be mineralized to inorganic forms. Simultaneously with mineralization, the process of humification acts to transform a fraction of the plant residues into stable soil organic matter (SOM) or humus. For reference, Schlesinger (1990) estimated that only ˜0.7% of detritus eventually becomes stabilized into humus.Decomposition plays a key role in the cycling of most plant macro- and micronutrients and in the formation of humus. Figure 1 places the roles of detrital processing and mineralization within the context of the biogeochemical cycling of essential plant nutrients. Chapin (1991) found that while the atmosphere supplied 4% and mineral weathering supplied no nitrogen and <1% of phosphorus, internal nutrient recycling is the source for >95% of all the nitrogen and phosphorus uptake by tundra species in Barrow, Alaska. In a cool temperate forest, nutrient recycling accounted for 93%, 89%, 88%, and 65% of total sources for nitrogen, phosphorus, potassium, and calcium, respectively ( Chapin, 1991). (13K)Figure 1. A decomposition-centric biogeochemical model of nutrient cycling. Although there is significant

  14. Rhizosphere Environment and Labile Phosphorus Release from Organic Waste-Amended Soils.

    NASA Astrophysics Data System (ADS)

    Dao, Thanh H.

    2015-04-01

    Crop residues and biofertilizers are primary sources of nutrients for organic crop production. However, soils treated with large amounts of nutrient-enriched manure have elevated phosphorus (P) levels in regions of intensive animal agriculture. Surpluses occurred in these amended soils, resulting in large pools of exchangeable inorganic P (Pi) and enzyme-labile organic P (Po) that averaging 30.9 and 68.2 mg kg-1, respectively. Organic acids produced during crop residue decomposition can promote the complexation of counter-ions and decouple and release unbound Pi from metal and alkali metal phosphates. Animal manure and cover crop residues also contain large amounts of soluble organic matter, and likely generate similar ligands. However, a high degree of heterogeneity in P spatial distribution in such amended fields, arising from variances in substrate physical forms ranging from slurries to dried solids, composition, and diverse application methods and equipment. Distinct clusters of Pi and Po were observed, where accumulation of the latter forms was associated with high soil microbial biomass C and reduced phosphomonoesterases' activity. Accurate estimates of plant requirements and lability of soil P pools, and real-time plant and soil P sensing systems are critical considerations to optimally manage manure-derived nutrients in crop production systems. An in situ X-ray fluorescence-based approach to sensing canopy and soil XRFS-P was developed to improve the yield-soil P relationship for optimal nutrient recommendations in addition to allowing in-the-field verification of foliar P status.

  15. Glaciers as a source of ancient and labile organic matter to the marine environment.

    Treesearch

    Eran Hood; Jason Fellman; Robert G.M. Spencer; Peter J. Hernes; Rick Edwards; David D' Amore; Durelle Scott

    2009-01-01

    Riverine organic matter supports of the order of one-fifth of estuarine metabolism. Coastal ecosystems are therefore sensitive to alteration of both the quantity and lability of terrigenous dissolved organic matter (DOM) delivered by rivers. Here we characterize streamwater DOM from 11 coastal watersheds on the Gulf of Alaska that vary widely in glacier coverage. In...

  16. Experimental Determination of Isotopic Fractionation of Chromium(III) During Oxidation by Manganese Oxides

    NASA Astrophysics Data System (ADS)

    Bain, D. J.; Bullen, T. D.

    2004-12-01

    In environmental conditions, chromium (Cr) exists in either the immobile, micronutrient trivalent form (Cr(III)) or the mobile, toxic hexavalent (Cr(VI)) form. Cr(VI) quickly reduces upon encountering Fe(II) or soil organic material (SOM). Therefore, it is often assumed that human Cr additions to terrestrial systems will impact localized areas and natural sources pose minimal threat to human or ecosystem health. However, oxidation and mobilization of Cr(III) by common manganese (Mn) oxides is less understood, especially in field settings. Moreover, Cr(VI)'s anionic form should enhance mobility through Fe- and SOM-poor soil and saprolite matrices. The variety of redox environments along a flowpath makes Cr source identification difficult with only concentration and speciation data. However, Cr has four stable isotopes (50, 52, 53, and 54), and characteristic fractionations during redox transformations might allow clarification of sources and flowpaths. For example, Cr(VI) reduction by a variety of reductants discriminates against heavy Cr, resulting in an increasingly heavy Cr(VI) fraction as reduction proceeds (α Cr(III)-Cr(VI) ˜ 0.996). Measurement of isotopic fractionation in other environmental Cr transformations, including oxidation, is necessary to understand Cr fate and transport. Recent estimates of isotopic fractionation between Cr aqueous species based on theoretical considerations indicate that at equilibrium α Cr(III)-Cr(VI) ˜ 0.994. To test this theoretical prediction, we are assessing the isotopic variability of aqueous Cr during oxidation of Cr(III) on MnO2 materials such as birnessite in laboratory experiments. Initial results indicate that the isotopic composition of the product Cr(VI) ranges from -2.50 to +0.71 ‰ δ 53Cr, suggesting an important role for kinetic isotope effects during the initial oxidation process. Large fluctuations in isotopic composition continue after dissolved Cr(VI) and Cr(III) ratios stabilize and net Cr(VI) production

  17. Experimental evidence for an effect of early-diagenetic interaction between labile and refractory marine sedimentary organic matter on nitrogen dynamics

    NASA Astrophysics Data System (ADS)

    Turnewitsch, Robert; Domeyer, Bettina; Graf, Gerhard

    2007-05-01

    In most natural sedimentary systems labile and refractory organic material (OM) occur concomitantly. Little, however, is known on how different kinds of OM interact and how such interactions affect early diagenesis in sediments. In a simple sediment experiment, we investigated how interactions of OM substrates of different degradability affect benthic nitrogen (N) dynamics. Temporal evolution of a set of selected biogeochemical parameters was monitored in sandy sediment over 116 days in three experimental set-ups spiked with labile OM (tissue of Mytilus edulis), refractory OM (mostly aged Zostera marina and macroalgae), and a 1:1 mixture of labile and refractory OM. The initial amounts of particulate organic carbon (POC) were identical in the three set-ups. To check for non-linear interactions between labile and refractory OM, the evolution of the mixture system was compared with the evolution of the simple sum of the labile and refractory systems, divided by two. The sum system is the experimental control where labile and refractory OM are virtually combined but not allowed to interact. During the first 30 days there was evidence for net dissolved-inorganic-nitrogen (DIN) production followed by net DIN consumption. (Here 'DIN' is the sum of ammonium, nitrite and nitrate.) After ˜ 30 days a quasi steady state was reached. Non-linear interactions between the two types of OM were reflected by three main differences between the early-diagenetic evolutions of nitrogen dynamics of the mixture and sum (control) systems: (1) In the mixture system the phases of net DIN production and consumption commenced more rapidly and were more intense. (2) The mixture system was shifted towards a more oxidised state of DIN products [as indicated by increased (nitrite + nitrate)/(ammonium) ratios]. (3) There was some evidence that more OM, POC and particulate nitrogen were preserved in the mixture system. That is, in the mixture system more particulate OM was preserved while a higher

  18. Interactive priming of biochar and labile organic matter mineralization in a smectite-rich soil.

    PubMed

    Keith, Alexandra; Singh, Balwant; Singh, Bhupinder Pal

    2011-11-15

    Biochar is considered as an attractive tool for long-term carbon (C) storage in soil. However, there is limited knowledge about the effect of labile organic matter (LOM) on biochar-C mineralization in soil or the vice versa. An incubation experiment (20 °C) was conducted for 120 days to quantify the interactive priming effects of biochar-C and LOM-C mineralization in a smectitic clayey soil. Sugar cane residue (source of LOM) at a rate of 0, 1, 2, and 4% (w/w) in combination with two wood biochars (450 and 550 °C) at a rate of 2% (w/w) were applied to the soil. The use of biochars (~ -36‰) and LOM (-12.7‰) or soil (-14.3‰) with isotopically distinct δ(13)C values allowed the quantification of C mineralized from biochar and LOM/soil. A small fraction (0.4-1.1%) of the applied biochar-C was mineralized, and the mineralization of biochar-C increased significantly with increasing application rates of LOM, especially during the early stages of incubation. Concurrently, biochar application reduced the mineralization of LOM-C, and the magnitude of this effect increased with increasing rate of LOM addition. Over time, the interactive priming of biochar-C and LOM-C mineralization was stabilized. Biochar application possesses a considerable merit for long-term soil C-sequestration, and it has a stabilizing effect on LOM in soil.

  19. Initial cloning and sequencing of hydHG, an operon homologous to ntrBC and regulating the labile hydrogenase activity in Escherichia coli K-12.

    PubMed Central

    Stoker, K; Reijnders, W N; Oltmann, L F; Stouthamer, A H

    1989-01-01

    To isolate genes from Escherichia coli which regulate the labile hydrogenase activity, a plasmid library was used to transform hydL mutants lacking the labile hydrogenase. A single type of gene, designated hydG, was isolated. This gene also partially restored the hydrogenase activity in hydF mutants (which are defective in all hydrogenase isoenzymes), although the low hydrogenase 1 and 2 levels were not induced. Therefore, hydG apparently regulates, specifically, the labile hydrogenase activity. Restoration of this latter activity in hydF mutants was accompanied by a proportional increase of the H2 uptake activity, suggesting a functional relationship. H2:fumarate oxidoreductase activity was not restored in complemented hydL mutants. These latter strains may therefore lack, in addition to the labile hydrogenase, a second component (provisionally designated component R), possibly an electron carrier coupling H2 oxidation to the anerobic respiratory chain. Sequence analysis showed an open reading frame of 1,314 base pairs for hydG. It was preceded by a ribosome-binding site but apparently lacked a promoter. Minicell experiments revealed a single polypeptide of approximately 50 kilodaltons. Comparison of the predicted amino acid sequence with a protein sequence data base revealed strong homology to NtrC from Klebsiella pneumoniae, a DNA-binding transcriptional activator. The 411 base pairs upstream from pHG40 contained a second open reading frame overlapping hydG by four bases. The deduced amino acid sequence showed considerable homology with the C-terminal part of NtrB. This sequence was therefore assumed to be part of a second gene, encoding the NtrB-like component, and was designated hydH. The labile hydrogenase activity in E. coli is apparently regulated by a multicomponent system analogous to the NtrB-NtrC system. This conclusion is in agreement with the results of Birkmann et al. (A. Birkmann, R. G. Sawers, and A. Böck, Mol. Gen. Genet. 210:535-542, 1987), who

  20. Waterlogging risk assessment based on self-organizing map (SOM) artificial neural networks: A case study of an urban storm in Beijing

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lai, Wen-li; Wang, Hong-rui; Wang, Cheng

    Due to rapid urbanization, waterlogging induced by torrential rainfall has become a global concern and a potential risk affecting urban habitant's safety. Widespread waterlogging disasters have occurred almost annually in the urban area of Beijing, the capital of China. Based on a self-organizing map (SOM) artificial neural network (ANN), a graded waterlogging risk assessment was conducted on 56 low-lying points in Beijing, China. Social risk factors, such as Gross domestic product (GDP), population density, and traffic congestion, were utilized as input datasets in this study. The results indicate that SOM-ANN is suitable for automatically and quantitatively assessing risks associated withmore » waterlogging. The greatest advantage of SOM-ANN in the assessment of waterlogging risk is that a priori knowledge about classification categories and assessment indicator weights is not needed. As a result, SOM-ANN can effectively overcome interference from subjective factors, producing classification results that are more objective and accurate. In this paper, the risk level of waterlogging in Beijing was divided into five grades. As a result, the points that were assigned risk grades of IV or V were located mainly in the districts of Chaoyang, Haidian, Xicheng, and Dongcheng.« less

  1. Waterlogging risk assessment based on self-organizing map (SOM) artificial neural networks: A case study of an urban storm in Beijing

    DOE PAGES

    Lai, Wen-li; Wang, Hong-rui; Wang, Cheng; ...

    2017-05-05

    Due to rapid urbanization, waterlogging induced by torrential rainfall has become a global concern and a potential risk affecting urban habitant's safety. Widespread waterlogging disasters have occurred almost annually in the urban area of Beijing, the capital of China. Based on a self-organizing map (SOM) artificial neural network (ANN), a graded waterlogging risk assessment was conducted on 56 low-lying points in Beijing, China. Social risk factors, such as Gross domestic product (GDP), population density, and traffic congestion, were utilized as input datasets in this study. The results indicate that SOM-ANN is suitable for automatically and quantitatively assessing risks associated withmore » waterlogging. The greatest advantage of SOM-ANN in the assessment of waterlogging risk is that a priori knowledge about classification categories and assessment indicator weights is not needed. As a result, SOM-ANN can effectively overcome interference from subjective factors, producing classification results that are more objective and accurate. In this paper, the risk level of waterlogging in Beijing was divided into five grades. As a result, the points that were assigned risk grades of IV or V were located mainly in the districts of Chaoyang, Haidian, Xicheng, and Dongcheng.« less

  2. Type II Heat-labile Enterotoxins: Structure, Function, and Immunomofdulatory Properties

    PubMed Central

    Hajishengallis, George; Connell, Terry D.

    2012-01-01

    The heat-labile enterotoxins (HLTs) of Escherichia coli and Vibrio cholerae are classified into two major types on the basis of genetic, biochemical, and immunological properties. Type I and Type II HLT have been intensively studied for their exceptionally strong adjuvant activities. Despite general structural similarities, these molecules, in intact or derivative (non-toxic) forms, display notable differences in their mode of immunomodulatory action. The molecular basis of these differences has remained largely uncharacterized until recently. This review focuses on the Type II HLTs and their immunomodulatory properties which depend largely on interactions with unique gangliosides and Toll-like receptors that are not utilized by the Type I HLTs. PMID:23137790

  3. Evolution of phenotypic plasticity and environmental tolerance of a labile quantitative character in a fluctuating environment.

    PubMed

    Lande, R

    2014-05-01

    Quantitative genetic models of evolution of phenotypic plasticity are used to derive environmental tolerance curves for a population in a changing environment, providing a theoretical foundation for integrating physiological and community ecology with evolutionary genetics of plasticity and norms of reaction. Plasticity is modelled for a labile quantitative character undergoing continuous reversible development and selection in a fluctuating environment. If there is no cost of plasticity, a labile character evolves expected plasticity equalling the slope of the optimal phenotype as a function of the environment. This contrasts with previous theory for plasticity influenced by the environment at a critical stage of early development determining a constant adult phenotype on which selection acts, for which the expected plasticity is reduced by the environmental predictability over the discrete time lag between development and selection. With a cost of plasticity in a labile character, the expected plasticity depends on the cost and on the environmental variance and predictability averaged over the continuous developmental time lag. Environmental tolerance curves derived from this model confirm traditional assumptions in physiological ecology and provide new insights. Tolerance curve width increases with larger environmental variance, but can only evolve within a limited range. The strength of the trade-off between tolerance curve height and width depends on the cost of plasticity. Asymmetric tolerance curves caused by male sterility at high temperature are illustrated. A simple condition is given for a large transient increase in plasticity and tolerance curve width following a sudden change in average environment. © 2014 The Author. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

  4. In situ application of a cellulose bag and an ion exchanger for differentiation of labile and inert metal species in aquatic systems.

    PubMed

    Goveia, Danielle; Rosa, André Henrique; Bellin, Iramaia Corrêa; Lobo, Fabiana Aparecida; Fraceto, Leonardo Fernandes; Roveda, José Arnaldo Frutuoso; Romão, Luciane Pimenta Cruz; Dias Filho, Newton Luiz

    2008-02-01

    This work involved the development and application of a new analytical procedure for in-situ characterization of the lability of metal species in aquatic systems by using a system equipped with a diffusion membrane and cellulose organomodified with p-aminobenzoic acid groups (DM-Cell-PAB). To this end, the DM-Cell-PAB system was prepared by adding cellulose organomodified with p-aminobenzoic acid groups (Cell-PAB) to pre-purified cellulose bags. After the DM-Cell-PAB system was sealed, it was examined in the laboratory. The in-situ application involved immersing the DM-Cell-PAB system in two different rivers, enabling us to study the relative lability of metal species (Cu, Cd, Fe, Mn, and Ni) as a function of time and quantity of exchanger. The procedure is simple and opens up a new perspective for understanding environmental phenomena relating to the complexation, transport, stability, and lability of metal species in aquatic systems rich in organic matter.

  5. Chemical and spectroscopic analyses of organic matter transformation in warming tundra soils

    NASA Astrophysics Data System (ADS)

    Herndon, E.; Roy Chowdhury, T.; Mann, B. F.; Graham, D. E.; Bargar, J.; Gu, B.; Liang, L.

    2013-12-01

    with increasing mineral content of the soil, likely due to the presence of labile organics bound to Fe-oxide minerals. In addition, 13-80% of the total C remained in soil following sequential chemical extractions, suggesting resistance to degradation and strong association with minerals. Soil incubations showed temperature-dependent production of CO2 and CH4, indicating microbial C degradation. The masses of CO2 and CH4 released represent only a small fraction of the total soil organic C, and little change in was observed in bulk SOM. However, the water-soluble C exhibited significant vulnerability to degradation, as revealed by HPLC and spectroscopic analyses, and these results suggest potential pathways for chemical transformation of soil C during decomposition. The results of this study will contribute to a computational modeling framework for understanding sources and rates of C fluxes from soils to the atmosphere and will help elucidate potential changes to Arctic tundra systems subject to warming.

  6. Assessment of trace heavy metals dynamics during the interaction of aqueous solutions with the artificial OECD soil: Evaluation of the effect of soil organic matter content and colloidal mobilization.

    PubMed

    Pontoni, Ludovico; van Hullebusch, Eric D; Fabbricino, Massimiliano; Esposito, Giovanni; Pirozzi, Francesco

    2016-11-01

    A micro-contamination phenomenon was reproduced and studied at lab-scale, mimicking the irrigation of a standard artificial soil with a water solution containing three Heavy Metals (HMs) at trace concentration level. To assess the dynamics of micro-pollutants accumulation and migration trough the soil, the organic matter in the soil was varied, together with sodicity of the irrigation water. Accumulation of the investigated contaminants was observed mainly in the top layer (≤1 cm) of the irrigated soil. This was attributed to the high interaction capacity of the soil compared to the low HM concentrations in the water phase. HMs transport pattern was described assuming a multi-component mechanism including: i) the interaction of HMs with the colloidal phase of the soil; ii) the slow and constant release of small molecular weight ligands detaching from the soil immobile matrix; iii) the transportation of HMs through the soil by these low molecular weight chaperon molecules. The mobility was directly related to the soil organic matter (SOM), since higher amount of SOM correspond to a higher number of chaperon molecules. In the first centimetre of the soil the metals were mostly bound to the acid labile fraction. Very low mobilization was observed with increasing sodicity in the leaching water, since such conditions were unfavourable to the colloidal mobilization of SOM. This indicated that water/soil transfer of pollutant is not only related to the contaminant concentration in the irrigation water but also to the characteristics of the aqueous solution and to the physical-chemical properties of the soil. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Fusion of Escherichia coli heat-stable enterotoxin and heat-labile enterotoxin B subunit.

    PubMed

    Guzman-Verduzco, L M; Kupersztoch, Y M

    1987-11-01

    The 3' terminus of the DNA coding for the extracellular Escherichia coli heat-stable enterotoxin (ST) devoid of transcription and translation stop signals was fused to the 5' terminus of the DNA coding for the periplasmic B subunit of the heat-labile enterotoxin (LTB) deleted of ribosomal binding sites and leader peptide. By RNA-DNA hybridization analysis, it was shown that the fused DNA was transcribed in vivo into an RNA species in close agreement with the expected molecular weight inferred from the nucleotide sequence. The translation products of the fused DNA resulted in a hybrid molecule recognized in Western blots (immunoblots) with antibodies directed against the heat-labile moiety. Anti-LTB antibodies coupled to a solid support bound ST and LTB simultaneously when incubated with ST-LTB cellular extracts. By [35S]cysteine pulse-chase experiments, it was shown that the fused ST-LTB polypeptide was converted from a precursor with an equivalent electrophoretic mobility of 20,800 daltons to an approximately 18,500-dalton species, which accumulated within the cell. The data suggest that wild-type ST undergoes at least two processing steps during its export to the culture supernatant. Blocking the natural carboxy terminus of ST inhibited the second proteolytic step and extracellular delivery of the hybrid molecule.

  8. Soil carbon fractions and biological activity based indices can be used to study the impact of land management and ecological successions

    DOE PAGES

    de Moraes Sa, Joao Carlos; Potma Goncalves, Daniel Ruiz; Ferreira, Lucimara Aparecida; ...

    2017-08-31

    Soil organic carbon (SOC) is a strong indicator of soil health. Development of efficient soil quality indicators is crucial to better understand the impact of land management strategies on the recovery of degraded ecosystems. We hypothesized that SOC fractions and biological attributes can compose strong soil quality indicators to assess an ecosystem recovery following disturbance. Thus, the objective of this study was to evaluate the use of soil biological activity and SOC fractions to study the impact of different land use systems and ecological successions in ecosystem recovery. We selected six land use systems: tobacco (Nicotiana tabacum) cultivation; pastureland; reforestedmore » land with Eucalyptus sp.; and natural ecological successions with 10, 20 and 35 years of vegetation regeneration, respectively. We collected disturbed and undisturbed soil samples in triplicate at 0–5, 5–10, 10–20 and 20–40 cm depth intervals. Several fractionation approaches were used to determine SOC pools: hot water extractable organic carbon, permanganate oxidized organic carbon, particulate organic carbon, mineral associated organic carbon and total SOC. The activity of the enzyme arylsulfatase was used to represent soil biological attributes. We calculated three indices to represent the soil quality: carbon management index, soil resilience index and biological activity index. Our results suggest that the SOC fractions and the enzyme activity followed the increase of vegetation complexity of the ecological succession stages. The labile SOC pool, in addition to enzyme activity, was the most sensitive variable to assess land use changes. The biomass-C input was considered to be the main reason of SOC increase, and the gains of labile SOC fractions were directly related to the increase of SOC stocks. Both, biological and carbon management indices were efficient tools to characterize the impact of studied management systems. Also, we found that assessment of deeper soil

  9. Soil carbon fractions and biological activity based indices can be used to study the impact of land management and ecological successions

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    de Moraes Sa, Joao Carlos; Potma Goncalves, Daniel Ruiz; Ferreira, Lucimara Aparecida

    Soil organic carbon (SOC) is a strong indicator of soil health. Development of efficient soil quality indicators is crucial to better understand the impact of land management strategies on the recovery of degraded ecosystems. We hypothesized that SOC fractions and biological attributes can compose strong soil quality indicators to assess an ecosystem recovery following disturbance. Thus, the objective of this study was to evaluate the use of soil biological activity and SOC fractions to study the impact of different land use systems and ecological successions in ecosystem recovery. We selected six land use systems: tobacco (Nicotiana tabacum) cultivation; pastureland; reforestedmore » land with Eucalyptus sp.; and natural ecological successions with 10, 20 and 35 years of vegetation regeneration, respectively. We collected disturbed and undisturbed soil samples in triplicate at 0–5, 5–10, 10–20 and 20–40 cm depth intervals. Several fractionation approaches were used to determine SOC pools: hot water extractable organic carbon, permanganate oxidized organic carbon, particulate organic carbon, mineral associated organic carbon and total SOC. The activity of the enzyme arylsulfatase was used to represent soil biological attributes. We calculated three indices to represent the soil quality: carbon management index, soil resilience index and biological activity index. Our results suggest that the SOC fractions and the enzyme activity followed the increase of vegetation complexity of the ecological succession stages. The labile SOC pool, in addition to enzyme activity, was the most sensitive variable to assess land use changes. The biomass-C input was considered to be the main reason of SOC increase, and the gains of labile SOC fractions were directly related to the increase of SOC stocks. Both, biological and carbon management indices were efficient tools to characterize the impact of studied management systems. Also, we found that assessment of deeper soil

  10. Assessment of chemical and biochemical stabilization of organic C in soils from the long-term experiments at Rothamsted (UK).

    PubMed

    De Nobili, M; Contin, M; Mahieu, N; Randall, E W; Brookes, P C

    2008-01-01

    Biological and chemical stabilization of organic C was assessed in soils sampled from the long-term experiments at Rothamsted (UK), representing a wide range of carbon inputs and managements by extracting labile, non-humified organic matter (NH) and humic substances (HS). Four sequentially extracted humic substances fractions of soil organic matter (SOM) were extracted and characterized before and after a 215-day laboratory incubation at 25 degrees C from two arable soils, a woodland soil and an occasionally stubbed soil. The fractions corresponded to biochemically stabilised SOM extracted in 0.5M NaOH (free fulvic acids (FA) and humic acids (HA)) and chemically plus biochemically stabilised SOM extracted from the residue with 0.1M Na4P2O7 plus 0.1M NaOH (bound FA and HA). Our aim was to investigate the effects of chemical and biochemical stabilization on carbon sequestration. The non-humic to humic (NH/H) C ratio separated the soils into two distinct groups: arable soils (unless fertilised with farmyard manure) had an NH/H C ratio between 1.05 and 0.71, about twice that of the other soils (0.51-0.26). During incubation a slow, but detectable, decrease in the NH/H C ratio occurred in soils of C input equivalent or lower to 4Mgha(-1)y(-1), whereas the ratio remained practically constant in the other soils. Before incubation the free to bound humic C ratio increased linearly (R2=0.91) with C inputs in the soils from the Broadbalk experiment and decreased during incubation, showing that biochemical stabilization is less effective than chemical stabilization in preserving humic C. Changes in delta13C and delta15N after incubation were confined to the free FA fractions. The delta13C of free FA increased by 1.48 and 0.80 per thousand, respectively, in the stubbed and woodland soils, indicating a progressive biological transformation. On the contrary, a decrease was observed for the bound FA of both soils. Concomitantly, a Deltadelta15N of up to +3.52 per thousand was

  11. Pyrolysis-combustion 14C dating of soil organic matter

    USGS Publications Warehouse

    Wang, Hongfang; Hackley, Keith C.; Panno, S.V.; Coleman, D.D.; Liu, J.C.-L.; Brown, J.

    2003-01-01

    Radiocarbon (14C) dating of total soil organic matter (SOM) often yields results inconsistent with the stratigraphic sequence. The onerous chemical extractions for SOM fractions do not always produce satisfactory 14C dates. In an effort to develop an alternative method, the pyrolysis-combustion technique was investigated to partition SOM into pyrolysis volatile (Py-V) and pyrolysis residue (Py-R) fractions. The Py-V fractions obtained from a thick glacigenic loess succession in Illinois yielded 14C dates much younger but more reasonable than the counterpart Py-R fractions for the soil residence time. Carbon isotopic composition (??13C) was heavier in the Py-V fractions, suggesting a greater abundance of carbohydrate- and protein-related constituents, and ??13C was lighter in the Py-R fractions, suggesting more lignin- and lipid-related constituents. The combination of 14C dates and ??13C values indicates that the Py-V fractions are less biodegradation resistant and the Py-R fractions are more biodegradation resistant. The pyrolysis-combustion method provides a less cumbersome approach for 14C dating of SOM fractions. With further study, this method may become a useful tool for analyzing unlithified terrestrial sediments when macrofossils are absent. ?? 2003 University of Washington. Published by Elsevier Inc. All rights reserved.

  12. Labile Low-Molecular-Mass Metal Complexes in Mitochondria: Trials and Tribulations of a Burgeoning Field.

    PubMed

    Lindahl, Paul A; Moore, Michael J

    2016-08-02

    Iron, copper, zinc, manganese, cobalt, and molybdenum play important roles in mitochondrial biochemistry, serving to help catalyze reactions in numerous metalloenzymes. These metals are also found in labile "pools" within mitochondria. Although the composition and cellular function of these pools are largely unknown, they are thought to be comprised of nonproteinaceous low-molecular-mass (LMM) metal complexes. Many problems must be solved before these pools can be fully defined, especially problems stemming from the lability of such complexes. This lability arises from inherently weak coordinate bonds between ligands and metals. This is an advantage for catalysis and trafficking, but it makes characterization difficult. The most popular strategy for investigating such pools is to detect them using chelator probes with fluorescent properties that change upon metal coordination. Characterization is limited because of the inevitable destruction of the complexes during their detection. Moreover, probes likely react with more than one type of metal complex, confusing analyses. An alternative approach is to use liquid chromatography (LC) coupled with inductively coupled plasma mass spectrometry (ICP-MS). With help from a previous lab member, the authors recently developed an LC-ICP-MS approach to analyze LMM extracts from yeast and mammalian mitochondria. They detected several metal complexes, including Fe580, Fe1100, Fe1500, Cu5000, Zn1200, Zn1500, Mn1100, Mn2000, Co1200, Co1500, and Mo780 (numbers refer to approximate masses in daltons). Many of these may be used to metalate apo-metalloproteins as they fold inside the organelle. The LC-based approach also has challenges, e.g., in distinguishing artifactual metal complexes from endogenous ones, due to the fact that cells must be disrupted to form extracts before they are passed through chromatography columns prior to analysis. Ultimately, both approaches will be needed to characterize these intriguing complexes and to

  13. Mayolenes: Labile defensive lipids from the glandular hairs of a caterpillar (Pieris rapae)

    PubMed Central

    Smedley, Scott R.; Schroeder, Frank C.; Weibel, Douglas B.; Meinwald, Jerrold; Lafleur, Katie A.; Renwick, J. Alan; Rutowski, Ronald; Eisner, Thomas

    2002-01-01

    Larvae of the European cabbage butterfly, Pieris rapae (Pieridae), are beset with glandular hairs, bearing droplets of a clear oily secretion at their tip. The fluid consists primarily of a series of chemically labile, unsaturated lipids, the mayolenes, which are derived from 11-hydroxylinolenic acid. In bioassays with the ant Crematogaster lineolata, the secretion was shown to be potently deterrent, indicating that the fluid plays a defensive role in nature. PMID:11997469

  14. Catchment classification by runoff behaviour with self-organizing maps (SOM)

    NASA Astrophysics Data System (ADS)

    Ley, R.; Casper, M. C.; Hellebrand, H.; Merz, R.

    2011-09-01

    Catchments show a wide range of response behaviour, even if they are adjacent. For many purposes it is necessary to characterise and classify them, e.g. for regionalisation, prediction in ungauged catchments, model parameterisation. In this study, we investigate hydrological similarity of catchments with respect to their response behaviour. We analyse more than 8200 event runoff coefficients (ERCs) and flow duration curves of 53 gauged catchments in Rhineland-Palatinate, Germany, for the period from 1993 to 2008, covering a huge variability of weather and runoff conditions. The spatio-temporal variability of event-runoff coefficients and flow duration curves are assumed to represent how different catchments "transform" rainfall into runoff. From the runoff coefficients and flow duration curves we derive 12 signature indices describing various aspects of catchment response behaviour to characterise each catchment. Hydrological similarity of catchments is defined by high similarities of their indices. We identify, analyse and describe hydrologically similar catchments by cluster analysis using Self-Organizing Maps (SOM). As a result of the cluster analysis we get five clusters of similarly behaving catchments where each cluster represents one differentiated class of catchments. As catchment response behaviour is supposed to be dependent on its physiographic and climatic characteristics, we compare groups of catchments clustered by response behaviour with clusters of catchments based on catchment properties. Results show an overlap of 67% between these two pools of clustered catchments which can be improved using the topologic correctness of SOMs.

  15. Catchment classification by runoff behaviour with self-organizing maps (SOM)

    NASA Astrophysics Data System (ADS)

    Ley, R.; Casper, M. C.; Hellebrand, H.; Merz, R.

    2011-03-01

    Catchments show a wide range of response behaviour, even if they are adjacent. For many purposes it is necessary to characterise and classify them, e.g. for regionalisation, prediction in ungauged catchments, model parameterisation. In this study, we investigate hydrological similarity of catchments with respect to their response behaviour. We analyse more than 8200 event runoff coefficients (ERCs) and flow duration curves of 53 gauged catchments in Rhineland-Palatinate, Germany, for the period from 1993 to 2008, covering a huge variability of weather and runoff conditions. The spatio-temporal variability of event-runoff coefficients and flow duration curves are assumed to represent how different catchments "transform" rainfall into runoff. From the runoff coefficients and flow duration curves we derive 12 signature indices describing various aspects of catchment response behaviour to characterise each catchment. Hydrological similarity of catchments is defined by high similarities of their indices. We identify, analyse and describe hydrologically similar catchments by cluster analysis using Self-Organizing Maps (SOM). As a result of the cluster analysis we get five clusters of similarly behaving catchments where each cluster represents one differentiated class of catchments. As catchment response behaviour is supposed to be dependent on its physiographic and climatic characteristics, we compare groups of catchments clustered by response behaviour with clusters of catchments based on catchment properties. Results show an overlap of 67% between these two pools of clustered catchments which can be improved using the topologic correctness of SOMs.

  16. Temperature Responses of Soil Organic Matter Components With Varying Recalcitrance

    NASA Astrophysics Data System (ADS)

    Simpson, M. J.; Feng, X.

    2007-12-01

    The response of soil organic matter (SOM) to global warming remains unclear partly due to the chemical heterogeneity of SOM composition. In this study, the decomposition of SOM from two grassland soils was investigated in a one-year laboratory incubation at six different temperatures. SOM was separated into solvent- extractable compounds, suberin- and cutin-derived compounds, and lignin monomers by solvent extraction, base hydrolysis, and CuO oxidation, respectively. These SOM components had distinct chemical structures and recalcitrance, and their decomposition was fitted by a two-pool exponential decay model. The stability of SOM components was assessed using geochemical parameters and kinetic parameters derived from model fitting. Lignin monomers exhibited much lower decay rates than solvent-extractable compounds and a relatively low percentage of lignin monomers partitioned into the labile SOM pool, which confirmed the generally accepted recalcitrance of lignin compounds. Suberin- and cutin-derived compounds had a poor fitting for the exponential decay model, and their recalcitrance was shown by the geochemical degradation parameter which stabilized during the incubation. The aliphatic components of suberin degraded faster than cutin-derived compounds, suggesting that cutin-derived compounds in the soil may be at a higher stage of degradation than suberin- derived compounds. The temperature sensitivity of decomposition, expressed as Q10, was derived from the relationship between temperature and SOM decay rates. SOM components exhibited varying temperature responses and the decomposition of the recalcitrant lignin monomers had much higher Q10 values than soil respiration or the solvent-extractable compounds decomposition. Our study shows that the decomposition of recalcitrant SOM is highly sensitive to temperature, more so than bulk soil mineralization. This observation suggests a potential acceleration in the degradation of the recalcitrant SOM pool with global

  17. Effects of drying-wetting and freezing-thawing cycle on leachability of metallic elements in mine soils

    NASA Astrophysics Data System (ADS)

    Bang, H.; Kim, J.; Hyun, S.

    2016-12-01

    Mine leachate derived from contaminated mine sites with metallic elements can pose serious risks on human society and environment. Only labile fraction of metallic elements in mine soils is subject to leaching and movement by rainfall. Lability of metallic element in soil is a function of bond strengths between metal and soil surfaces, which is influenced by environmental condition (e.g., rainfall intensity, duration, temperature, etc.) The purpose of this study was to elucidate the effects of various climate conditions on the leaching patterns and lability of metallic elements in mine soils. To do this, two mine soils were sampled from two abandoned mine sites located in Korea. Leaching test were conducted using batch decant-refill method. Various climatic conditions were employed in leaching test such as (1) oven drying (40oC) - wetting cycles, (2) air drying (20oC) - wetting cycle, and (3) freezing (-40oC) - thawing cycles. Duration of drying and freezing were varied from 4 days to 2 weeks. Concentration of metallic elements, pH, Eh and concentration of dissolved iron and sulfate in leachate from each leaching process was measured. To identify the changes of labile fraction in mine soils after each of drying or freezing period, sequential extraction procedure (five fraction) was used to compare labile fraction (i.e., F1 + F2) of metallic elements. The concentration of metallic elements in mine leachate was increased after drying and freezing procedure. The amounts of released metallic element from mine soils was changed depending on their drying or freezing period. In addition, labile fraction of metallic elements in soil was also changed after drying and freezing. The changes in labile fraction after drying and freezing might be due to the increased soil surface area by pore water volume expansion. Further study is therefore needed to evaluate the impact of altered physical properties of soils such as hydration of soil surface area and shrinking by drying and

  18. Effect of warming on the degradation and production of low-molecular-weight labile organic carbon in an Arctic tundra soil

    DOE PAGES

    Yang, Ziming; Wullschleger, Stan D.; Liang, Liyuan; ...

    2016-01-16

    The fate of soil organic carbon (SOC) stored in the Arctic permafrost is a key concern as temperatures continue to rise in the northern hemisphere. Studies and conceptual models suggest that SOC degradation is affected by the composition of SOC, but it is unclear exactly what portions of SOC are vulnerable to rapid breakdown and what mechanisms may be controlling SOC degradation upon permafrost thaw. Here, we examine the dynamic consumption and production of labile SOC in an anoxic incubation experiment using soil samples from the active layer at the Barrow Environmental Observatory, Barrow, Alaska, USA. Free-reducing sugars, alcohols, andmore » low-molecular-weight (LMW) organic acids were analyzed during incubation at either –2 or 8 °C for up to 240 days. Results show that simple sugar and alcohol SOC largely account for the initial rapid release of CO 2 and CH 4 through anaerobic fermentation, whereas the fermentation products, acetate and formate, are subsequently utilized as primary substrates for methanogenesis. Iron(III) reduction is correlated to acetate production and methanogenesis, suggesting its important role as an electron acceptor in tundra SOC respiration. These observations are further supported in a glucose addition experiment, in which rapid CO 2 and CH 4 production occurred concurrently with rapid production and consumption of labile organics such as acetate. However, addition of tannic acid, as a more complex organic substrate, showed little influence on the overall production of CO 2 and CH 4 and organic acids. Together our study shows that LMW labile organics in SOC control the initial rapid release of green-house gases upon warming. We thus present a conceptual framework for the labile SOC transformations and their relations to fermentation, iron reduction and methanogenesis, thereby providing the basis for improved model prediction of climate feedbacks in the Arctic.« less

  19. Distribution of dissolved and labile particulate trace metals in the overlying bottom water in the Vistula River plume (southern Baltic Sea).

    PubMed

    Sokolowski, A; Wolowicz, M; Hummel, H

    2001-10-01

    Overlying bottom water samples were collected in the Vistula River plume, southern Baltic Sea, (Poland) and analysed for dissolved and labile particulate (1 M HCl extractable) Cu, Pb, Zn, Mn, Fe and Ni, hydrological parameters being measured simultaneously. Particulate organic matter (POM), chlorophyll a and dissolved oxygen are key factors governing the chemical behaviour of the measured metal fractions. For the dissolved Cu, Pb, Zn, Fe and Ni two maxima, in the shallow and in the deeper part of the river plume, were found. In the shallow zone desorption from seaward fluxing metal-rich riverine particles account for markedly increased metal concentrations, as confirmed also by high particulate metal contents. For Pb, atmospheric inputs were also considered to have contributed to the elevated concentrations of dissolved Pb adjacent to the river mouth. In the deep zone desorption from detrital and/or resuspended particles by aerobic decomposition of organic material may be the main mechanism responsible for enrichment of particle-reactive metals (Cu, Pb, Zn) in the overyling bottom waters. The increased concentrations of dissolved Fe may have been due to reductive dissolution of Fe oxyhydroxides within the deep sediments by which dissolved Ni was released to the water. The distribution of Mn was related to dissolved oxygen concentrations, indicating that Mn is released to the water column under oxygen reduced conditions. However, Mn transfer to the dissolved phase from anoxic sediments in deeper part of the Vistula plume was hardly evidenced suggesting that benthic flux of Mn occurs under more severe reductive regime than is consistent with mobilization of Fe. Behaviour of Mn in a shallower part has been presumably affected by release from porewaters and by oxidization into less soluble species resulting in seasonal removal of this metal (e.g. in April) from the dissolved phase. The particulate fractions represented from about 6% (Ni) and 33% (Mn, Zn, Cu) to 80% (Fe

  20. Soil respiration, labile carbon pools, and enzyme activities as affected by tillage practices in a tropical rice-maize-cowpea cropping system.

    PubMed

    Neogi, S; Bhattacharyya, P; Roy, K S; Panda, B B; Nayak, A K; Rao, K S; Manna, M C

    2014-07-01

    In order to identify the viable option of tillage practices in rice-maize-cowpea cropping system that could cut down soil carbon dioxide (CO2) emission, sustain grain yield, and maintain better soil quality in tropical low land rice ecology soil respiration in terms of CO2 emission, labile carbon (C) pools, water-stable aggregate C fractions, and enzymatic activities were investigated in a sandy clay loam soil. Soil respiration is the major pathway of gaseous C efflux from terrestrial systems and acts as an important index of ecosystem functioning. The CO2-C emissions were quantified in between plants and rows throughout the year in rice-maize-cowpea cropping sequence both under conventional tillage (CT) and minimum tillage (MT) practices along with soil moisture and temperature. The CO2-C emissions, as a whole, were 24 % higher in between plants than in rows, and were in the range of 23.4-78.1, 37.1-128.1, and 28.6-101.2 mg m(-2) h(-1) under CT and 10.7-60.3, 17.3-99.1, and 17.2-79.1 mg m(-2) h(-1) under MT in rice, maize, and cowpea, respectively. The CO2-C emission was found highest under maize (44 %) followed by rice (33 %) and cowpea (23 %) irrespective of CT and MT practices. In CT system, the CO2-C emission increased significantly by 37.1 % with respect to MT on cumulative annual basis including fallow. The CO2-C emission per unit yield was at par in rice and cowpea signifying the beneficial effect of MT in maintaining soil quality and reduction of CO2 emission. The microbial biomass C (MBC), readily mineralizable C (RMC), water-soluble C (WSC), and permanganate-oxidizable C (PMOC) were 19.4, 20.4, 39.5, and 15.1 % higher under MT than CT. The C contents in soil aggregate fraction were significantly higher in MT than CT. Soil enzymatic activities like, dehydrogenase, fluorescein diacetate, and β-glucosidase were significantly higher by 13.8, 15.4, and 27.4 % under MT compared to CT. The soil labile C pools, enzymatic activities, and

  1. The Preparation of an Ultrastable Mesoporous Cr(III)-MOF via Reductive Labilization

    DTIC Science & Technology

    2015-09-02

    of metal clusters from a template MOF with a known structure. Fe(III)-MOFs can serve as practical structural templates because iron resembles chromium ...clusters in PCN-333 are able to accommodate both di- and trivalent metal ions by varying the charges of the terminal ligands, the bridging oxygen atoms, and...molecules in trivalent aqua complexes27 Inert complexes Labile complexes M(OH2) Cr(OH2)6 3+ Ir(OH2)6 3+ V(OH2)6 3+ Fe(OH2)6 3+ Ti(OH2)6 3+ k (s1) 2.4 10

  2. Assessing the Impact of Afforestation on Soil Organic C Sequestration by Means of Sequential Density Fractionation

    PubMed Central

    Cong, Weiwei; Ren, Tusheng; Li, Baoguo

    2015-01-01

    Afforestation is a prevalent practice carried out for soil recovery and carbon sequestration. Improved understanding of the effects of afforestation on soil organic carbon (SOC) content and dynamics is necessary to identify the particular processes of soil organic matter (SOM) formation and/or decomposition that result from afforestation. To elucidate these mechanisms, we have used a sequential density fractionation technique to identify the transfer mechanisms of forest derived C to soil fractions and investigate the impact of afforestation on SOC sequestration. Surface soil samples from continuous maize crop land (C4) and forest land (C3), which had been established 5, 12 and 25 yr, respectively, on the Northeast China Plain were separated into five density fractions. SOC, nitrogen (N) concentration and δ13C data from the three forests and adjacent cropland were compared. Afforestation decreased SOC concentration in the < 2.5 g cm-3 fractions from 5 yr forest sites, but increased SOC content in the < 2.0 g cm-3 fractions from 25 yr forest sites. Afforestation did not affect soil mass distribution, SOC and N proportional weight distributions across the density fractions. The < 1.8 g cm-3 fractions from 12 and 25 yr forests showed higher C/N and lower δ13C as compared to other fractions. Incorporation of forest litter-derived C occurred from low density (< 1.8 g cm-3) fractions to aggregates of higher density (1.8-2.5 g cm-3) through aggregate recombination and C transport in the pore system of the aggregates. Some forest litter-derived C could transfer from the light fractions or directly diffuse and adsorb onto mineral particles. Results from this study indicate that microaggregate protection and association between organic material and minerals provide major contribution to the SOC sequestration in the afforested soil system. PMID:25705896

  3. Purification and characterization of an oxygen-labile, NAD-dependent alcohol dehydrogenase from Desulfovibrio gigas.

    PubMed Central

    Hensgens, C M; Vonck, J; Van Beeumen, J; van Bruggen, E F; Hansen, T A

    1993-01-01

    A NAD-dependent, oxygen-labile alcohol dehydrogenase was purified from Desulfovibrio gigas. It was decameric, with subunits of M(r) 43,000. The best substrates were ethanol (Km, 0.15 mM) and 1-propanol (Km, 0.28 mM). N-terminal amino acid sequence analysis showed that the enzyme belongs to the same family of alcohol dehydrogenases as Zymomonas mobilis ADH2 and Bacillus methanolicus MDH. Images PMID:8491707

  4. Where is DNA preserved in soil organic matter?

    NASA Astrophysics Data System (ADS)

    Zaccone, Claudio; Beneduce, Luciano; Plaza, César

    2015-04-01

    Deoxyribonucleic acid (DNA) consists of long chains of alternating sugar and phosphate residues twisted in the form of a helix. Upon decomposition of plant and animal debris, this nucleic acid is released into the soil, where its fate is still not completely understood. In fact, although DNA is one of the organic compounds from living cells that is apparently broken down rapidly in soils, it is also potentially capable of being incorporated in (or interact with) the precursors of humic molecules. In order to track DNA occurrence in soil organic matter (SOM) fractions, an experiment was set up as a randomized complete block design with two factors, namely biochar addition and organic amendment. In particular, biochar (BC), applied at a rate of 20 t/ha, was combined with municipal solid waste compost (BC+MC) at a rate equivalent to 75 kg/ha of potentially available N, and with sewage sludge (BC+SS) at a rate equivalent to 75 kg/ha of potentially available N. Using a physical fractionation method, free SOM located between aggregates (unprotected C pool; FR), SOM occluded within macroaggregates (C pool weakly protected by physical mechanisms; MA), SOM occluded within microaggregates (C pool strongly protected by physical mechanisms; MI), and SOM associated with the mineral fractions (chemically-protected C pool; MIN) were separated from soil samples. DNA was then isolated from each fraction of the two series, as well as from the unamended soil (C) and from the bulk soils (WS), using Powersoil DNA isolation kit (MoBio, CA, USA) with a modified protocol. Data clearly show that the DNA survived the SOM fractionation, thus suggesting that physical fractionation methods create less artifacts compared to the chemical ones. Moreover, in both BC+MC and BC+SS series, most of the isolated DNA was present in the FR fraction, followed by the MA and the MI fractions. No DNA was recovered from the MIN fraction. This finding supports the idea that most of the DNA occurring in the SOM

  5. Availability of phosphate for phytoplankton and bacteria and of labile organic carbon for bacteria at different pCO2 levels in a mesocosm study

    NASA Astrophysics Data System (ADS)

    Tanaka, T.; Thingstad, T. F.; Løvdal, T.; Grossart, H.-P.; Larsen, A.; Schulz, K. G.; Riebesell, U.

    2007-11-01

    Availability of phosphate for phytoplankton and bacteria and of labile organic carbon for bacteria at different pCO2 levels were studied in a mesocosm experiment (PeECE III). Using nutrient-depleted SW Norwegian fjord waters, three different levels of pCO2 (350 μatm: 1×CO2; 750 μatm: 2×CO2; 1050 μatm: 3×CO2) were set up, and nitrate and phosphate were added at the start of the experiment in order to induce a phytoplankton bloom. Despite similar responses of total particulate P concentration and phosphate turnover time at the three different pCO2 levels, the size distribution of particulate P and 33PO4 uptake suggested that phosphate transferred to the >10 μm fraction was greater in the 3×CO2 mesocosm during the first 6-10 days when phosphate concentration was high. During the period of phosphate depletion (after Day 12), specific phosphate affinity and specific alkaline phosphatase activity (APA) suggested a P-deficiency (i.e. suboptimal phosphate supply) but not a P-limitation for the phytoplankton and bacterial community at the three different pCO2 levels. Although specific phosphate affinity and specific APA tended to be higher in 3×CO2 than in 2×CO2 and 1×CO2 mesocosms during the phosphate depletion period, no statistical differences were found. Responses of specific glucose affinity for bacteria were similar at the three different pCO2 levels. Measured specific glucose affinities were consistently much lower than the theoretical maximum predicted from the diffusion-limited model, suggesting that bacterial growth was not limited by the availability of labile dissolved organic carbon. These results suggest that availability of phosphate and glucose was similar at the three different pCO2 levels.

  6. Microwave-assisted extraction performed in low temperature and in vacuo for the extraction of labile compounds in food samples.

    PubMed

    Xiao, Xiaohua; Song, Wei; Wang, Jiayue; Li, Gongke

    2012-01-27

    In this study, low temperature vacuum microwave-assisted extraction, which simultaneous performed microwave-assisted extraction (MAE) in low temperature and in vacuo environment, was proposed. The influencing parameters including solid/liquid ratio, extraction temperature, extraction time, degree of vacuum and microwave power were discussed. The predominance of low temperature vacuum microwave-assisted extraction was investigated by comparing the extraction yields of vitamin C, β-carotene, aloin A and astaxanthin in different foods with that in MAE and solvent extraction, and 5.2-243% increments were obtained. On the other hand, the chemical kinetics of vitamin C and aloin A, which composed two different steps including the extraction step of analyte transferred from matrix into solvent and the decomposition step of analyte degraded in the extraction solvent, were proposed. All of the decomposition rates (K(2)) for the selected analyte in low temperature, in vacuo and in nitrogen atmosphere decreased significantly comparing with that in conventional MAE, which are in agreement with that obtained from experiments. Consequently, the present method was successfully applied to extract labile compound from different food samples. These results showed that low temperature and/or in vacuo environment in microwave-assisted extraction system was especially important to prevent the degradation of labile components and have good potential on the extraction of labile compound in foods, pharmaceutical and natural products. Copyright © 2011 Elsevier B.V. All rights reserved.

  7. Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe.

    PubMed

    Zhang, Ximei; Johnston, Eric R; Li, Linghao; Konstantinidis, Konstantinos T; Han, Xingguo

    2017-04-01

    Identifying soil microbial feedbacks to increasing temperatures and moisture alterations is critical for predicting how terrestrial ecosystems will respond to climate change. We performed a 5-year field experiment manipulating warming, watering and their combination in a semiarid temperate steppe in northern China. Warming stimulated the abundance of genes responsible for degrading recalcitrant soil organic matter (SOM) and reduced SOM content by 13%. Watering, and warming plus watering also increased the abundance of recalcitrant SOM catabolism pathways, but concurrently promoted plant growth and increased labile SOM content, which somewhat offset SOM loss. The treatments also increased microbial biomass, community complexity and metabolic potential for nitrogen and sulfur assimilation. Both microbial and plant community composition shifted with the treatment conditions, and the sample-to-sample compositional variations of the two communities (pairwise β-diversity distances) were significantly correlated. In particular, microbial community composition was substantially correlated with the dominant plant species (~0.54 Spearman correlation coefficient), much more than with measured soil indices, affirming a tight coupling between both biological communities. Collectively, our study revealed the direction and underlying mechanisms of microbial feedbacks to warming and suggested that semiarid regions of northern steppes could act as a net carbon source under increased temperatures, unless precipitation increases concurrently.

  8. Combining cross flow ultrafiltration and diffusion gradients in thin-films approaches to determine trace metal speciation in freshwaters

    NASA Astrophysics Data System (ADS)

    Liu, Ruixia; Lead, Jamie R.; Zhang, Hao

    2013-05-01

    Cross flow ultrafiltration (CFUF) and diffusive gradients in thin films (DGT) with open pore gel (OP) and restricted pore gel (RP) were used to measure trace metal speciation in selected UK freshwaters. The proportions of metals present in particulate forms (>1 μm) varied widely between 40-85% Pb, 60-80% Al, 7-56% Mn, 10-49% Cu, 0-55% Zn, 20-38% Cr, 20-30% Fe, 6-25% Co, 5-22% Cd and <7% Ni. In the colloidal fraction (2 kDa-1 μm) values varied between 53-91% Pb, 33-55% Al, 21-55% Cu, 20-44% Fe, 34-36% Cr, 20-40% Cd, 7-28% Co and Ni, 2-32% Zn and <8% Mn. Wide variations were also observed in the ultrafiltered fraction (<2 kDa). These results indicated that colloids indeed influenced the occurrence and transport of Al, Fe, Cr, Co, Ni, Cu, Zn, Cr and Pb metals in rivers, while inorganic or organic colloids did not exert an important control on Mn transport in the selected freshwaters. Of total species, total labile metal measured by DGT-OP accounted for 1.4-50% for Al, Fe, Co, Ni, Cu, Cd and Pb in all selected waters. Of these metals total labile Pb concentration was the lowest with value less than 1.4% although this value slightly increased after deducting particulate fractions. In some waters, a majority of total Mn, Zn and Cr is DGT labile, in which the DGT labile Mn fraction accounted for 98-118% of the total dissolved phase. In most cases, the inorganic labile concentration measured by DGT-RP was lower than the total labile metal concentration. By the combination of CFUF and DGT techniques, the concentrations of total labile and inorganic labile metal species in CFUF-derived truly dissolved phase were measured in four water samples. 100% of ultrafiltered Mn species was found to be total DGT labile. The proportions of total labile metal species were lower than those of ultrafiltered fraction for Al, Fe, Co, Ni, Cu, Cd and Pb in all selected waters, and Cr and Zn in some cases, indicating a large amount of natural complexing ligands with smaller size for the

  9. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.

    PubMed

    Chang, Guanxiao; Wang, Chuntao; Kong, Xiangxiang; Chen, Qian; Yang, Yongping; Hu, Xiangyang

    2018-06-18

    Imbibed seeds monitor environmental and endogenous signals to break dormancy and initiate growth under appropriate conditions. In Arabidopsis thaliana, high temperature (HT) induces secondary seed dormancy, but the underlying mechanism remains unclear. In this study, we found that the abi5-1 mutant was insensitive to high temperature, whereas plants overexpressing ABI5 displayed sensitivity. We then identified ABA-insensitive five-binding protein 2 (AFP2), which interacts with ABI5 and is involved in HT-induced secondary seed dormancy. Under HT stress, the loss-of-function afp2 mutant showed lower seeds germination frequency, reversely, AFP2 overexpressing lines (OE-AFP2) showed high germination frequency. Similar to the abi5 mutant, the crossed OE-AFP2 abi5 or afp2 abi5 lines showed high germination under HT, suggesting that ABI5 is epistatic to AFP2. SOM is reported to negatively regulate seeds germination by altering GA/ABA metabolism, here we found that AFP2 and ABI5 altered SOM transcription. Specifically, overexpressing AFP2 suppressed SOM transcription, resulting in high expression of GA biosynthesis-related genes and low expression of ABA biosynthesis-related genes, ultimately promoting seed germination under HT. Thus, our data demonstrate that AFP2 is a novel regulator to control HT-induced secondary seed dormancy through ABI5 and SOM. Copyright © 2018 Elsevier Inc. All rights reserved.

  10. Acid-Labile Acyclic Cucurbit[n]uril Molecular Containers for Controlled Release.

    PubMed

    Mao, Dake; Liang, Yajun; Liu, Yamin; Zhou, Xianhao; Ma, Jiaqi; Jiang, Biao; Liu, Jia; Ma, Da

    2017-10-02

    Stimuli-responsive molecular containers are of great importance for controlled drug delivery and other biomedical applications. A new type of acid labile acyclic cucurbit[n]uril (CB[n]) molecular containers is presented that can degrade and release the encapsulated cargo at accelerated rates under mildly acidic conditions (pH 5.5-6.5). These containers retain the excellent recognition properties of CB[n]-type hosts. A cell culture study demonstrated that the cellular uptake of cargos could be fine-tuned by complexation with different containers. The release and cell uptake of cargo dye was promoted by acidic pH. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  11. Localization of alkali-labile sites in donkey (Equus asinus) and stallion (Equus caballus) spermatozoa.

    PubMed

    Cortés-Gutiérrez, Elva I; Dávila-Rodríguez, Martha I; López-Fernández, Carmen; Fernández, José Luis; Crespo, Francisco; Gosálvez, Jaime

    2014-01-15

    The presence of constitutive alkali-labile sites (ALS) has been investigated using a protocol of DNA breakage detection-fluorescence in situ hybridization and comet assay in spermatozoa of donkey (Equus asinus) and stallion (Equus caballus). These results were compared with those obtained using a similar experimental approach using somatic cells. The relative abundance of ALS was of the order of four times more in spermatozoa than in somatic cells. Alkali-labile sites showed a tendency to cluster localized at the equatorial-distal regions of the sperm. The amount of hybridized signal in the ALS in the sperm of donkey (Equus asinus) was 1.3 times greater than in stallion (Equus caballus), and the length of the comet tail obtained in donkey sperm was 1.6 times longer than that observed in stallion (P < 0.05); however, these differences were not appreciated in somatic cells. In conclusion, ALS localization in sperm is not a randomized event and a different pattern of ALS distribution occurs for each species. These results suggest that ALS represents a species-specific issue related to chromatin organization in sperm and somatic cells in mammalian species, and they might diverge even with very short phylogenetic distances. Copyright © 2014 Elsevier Inc. All rights reserved.

  12. Biogeography of soil organic matter molecular structure across multiple soil size fractions

    NASA Astrophysics Data System (ADS)

    Meier, C. L.; Neff, J.

    2009-12-01

    Recent work suggests that there is a common soil decomposition sequence whereby plant inputs are metabolized into a physiologically constrained set of compounds originating from microbes that may persist in soil over relatively long time-scales. Plant inputs tend to be found in coarse particulate fractions (>180 μm) with relatively fast turnover times, while microbially derived compounds tend to accrue in the finer silt + clay fractions (<53 μm) with relatively long turnover times. To investigate whether a common decomposition sequence exists, we used pyrolysis gas chromatography/mass spectrometry (py-GC/MS) to characterize the molecular structure of soil organic matter (SOM) in three size fractions (590-180 μm, 180-53 μm, and <53 μm), using soils sampled from multiple biomes (alpine tundra, sub-alpine forest, boreal forest, temperate coniferous, temperate deciduous, dry desert/savannah, and tropical forest). We hypothesized that: 1) regardless of biome, fractions >180 μm would be chemically similar, and would be characterized by lignin and other plant-derived compounds; and 2) fractions <53 μm would also be similar across biomes but would be dominated by microbially-derived compounds like polysaccharides. Across all biomes, we found that there was significantly less lignin in <53 μm fractions compared to >180 μm fractions (p<0.0001), providing some support for the idea that plant material is not incorporated into soil C pools with relatively long turnover times. However, a principal components analysis (PCA) showed that the >180 μm coarse particulate fractions also contained compounds associated with microbial origins, indicating that microbial C is not limited to <53 μm size fractions. The PCA also revealed that samples within each of the three size fractions did not cluster together (i.e. they did not share a common molecular structure), but we did note that: 1) cold alpine and sub-alpine sites were unique and chemically similar; and 2) tropical

  13. Mineral-associated organic matter: are we now on the right path to accurately measuring and modelling it?

    NASA Astrophysics Data System (ADS)

    Cotrufo, M. F.

    2017-12-01

    Mineral-associated organic matter (MAOM) is the largest and most persistent pool of carbon in soil. Understanding and correctly modeling its dynamic is key to suggest management practices that can augment soil carbon storage for climate change mitigation, as well as increase soil organic matter (SOM) stocks to support soil health on the long-term. In the Microbial Efficiency Mineral Stabilization (MEMS) framework we proposed that, contrary to what originally thought, this form of persistent SOM is derived from the labile components of plant inputs, through their efficient microbial processing. I will present results from several experiments using dual isotope labeling of plant inputs that largely confirm this opinion, and point to the key role of dissolved organic matter in MAOM formation, and to the dynamic nature of the outer layer of MAOM. I will also show how we are incorporating this understanding in a new SOM model, which uses physically defined measurable pools rather than turnover-defined pools to forecast C cycling in soil.

  14. Priming alters soil carbon dynamics during forest succession

    NASA Astrophysics Data System (ADS)

    Qiao, Na; Xu, Xingliang; Wang, Juan; Kuzyakov, Yakov

    2017-04-01

    The mechanisms underlying soil carbon (C) dynamics during forest succession remain challenged. We examined priming of soil organic matter (SOM) decomposition along a vegetation succession: grassland, young and old-growth forests. Soil C was primed much more strongly in young secondary forest than in grassland or old-growth forest. Priming resulted in large C losses (negative net C balance) in young-forest soil, whereas C stocks increased in grassland and old-growth forest. Microbial composition assessed by phospholipid fatty acids (PLFA) and utilization of easily available organics (13C-PLFA) indicate that fungi were responsible for priming in young-forest soils. Consequently, labile C inputs released by litter decomposition and root exudation determine microbial functional groups that decompose SOM during forest succession. These findings provide novel insights into connections between SOM dynamics and stabilization with microbial functioning during forest succession and show that priming is an important mechanism for contrasting soil C dynamics in young and old-growth forests.

  15. MALDI-typing of infectious algae of the genus Prototheca using SOM portraits.

    PubMed

    Wirth, Henry; von Bergen, Martin; Murugaiyan, Jayaseelan; Rösler, Uwe; Stokowy, Tomasz; Binder, Hans

    2012-01-01

    MALDI-typing has become a frequently used approach for the identification of microorganisms and recently also of invertebrates. Similarity-comparisons are usually based on single-spectral data. We apply self-organizing maps (SOM) to portray the MS-spectral data with individual resolution and to improve the typing of Prototheca algae by using meta-spectra representing prototypes of groups of similar-behaving single spectra. The MALDI-TOF peaklists of more than 300 algae extracts referring to five Prototheca species were transformed into colored mosaic images serving as molecular portraits of the individual samples. The portraits visualize the algae-specific distribution of high- and low-amplitude peaks in two dimensions. Species-specific pattern of MS intensities were readily discernable in terms of unique single spots of high amplitude MS-peaks which collect characteristic fingerprint spectra. The spot patterns allow the visual identification of groups of samples referring to different species, genotypes or isolates. The use of meta-peaks instead of single-peaks reduces the dimension of the data and leads to an increased discriminating power in downstream analysis. We expect that our SOM portray method improves MS-based classifications and feature selection in upcoming applications of MALDI-typing based species identifications especially of closely related species. Copyright © 2011. Published by Elsevier B.V.

  16. Warming-Induced Changes to the Molecular Composition of Soil Organic Matter

    NASA Astrophysics Data System (ADS)

    Feng, X.; Simpson, M. J.; Simpson, A. J.; Wilson, K. P.; Williams, D.

    2007-12-01

    Soil organic matter (SOM) contains two times more carbon than the atmosphere and the potential changes to SOM quantity and quality with global warming are a major concern. It is commonly believed that global warming will accelerate the decomposition of labile SOM compounds while refractory SOM constituents will remain stable. However, experimental evidence of molecular-level changes to SOM composition with global warming is currently lacking. Here we employ SOM biomarkers and nuclear magnetic resonance (NMR) spectroscopy to study SOM composition and degradation in a soil warming experiment in southern Ontario, Canada. The soil warming experiment consisted of a control and a treatment plot in a mixed forest that had a temperature difference of about 5 degrees C for 14 months. Before soil warming the control and treatment plots had the same organic carbon (OC) content and SOM composition. Soil warming significantly increased soil OC content and the abundance of cutin-derived carbon originating from leaf tissues and decreased carbohydrates that are regarded as easily degradable. Lignin components, which are believed to be part of the stable and slowly-cycling SOM, were observed to be in an advanced stage of degradation. This observation is corroborated by increases in fungal biomass in the warmed soil because fungi are considered the primary decomposer of lignin in the soil environment. An NMR study of SOM in the warmed and control plots indicates that alkyl carbon, mainly originating from plant cuticles in the soil, increased in the warmed soil while O-alkyl carbon, primarily occurring in carbohydrates, decreased. Aromatic and phenolic carbon regions, which include the main structures found in lignin, decreased in the warmed soil. These data collectively suggest that there is a great potential for lignin degradation with soil warming, and that the refractory (aromatic) soil carbon storage may be reduced as a result of increased fungal growth in a warmer climate.

  17. Behaviour and dynamics of di-ammonium phosphate in bauxite processing residue sand in Western Australia--II. Phosphorus fractions and availability.

    PubMed

    Chen, C R; Phillips, I R; Wei, L L; Xu, Z H

    2010-06-01

    The production of alumina involves its extraction from bauxite ore using sodium hydroxide under high temperature and pressure. This process yields a large amount of residue wastes, which are difficult to revegetate due to their inherent hostile properties--high alkalinity and sodicity, poor water retention and low nutrient availability. Although phosphorus (P) is a key element limiting successful ecosystem restoration, little information is available on the availability and dynamics of P in rehabilitated bauxite-processing residue sand (BRS). The major aim of this experiment was to quantify P availability and behaviour as affected by pH, source of BRS and di-ammonium phosphate (DAP) application rate. This incubation experiment was undertaken using three sources of BRS, three DAP application rates (low, without addition of DAP; medium, 15.07 mg P and 13.63 mg N of DAP per jar, 100 g BRS; and high, 30.15 mg P and 27.26 mg N per jar, 100 g BRS), and four BRS pH treatments (4, 7, 9 and 11 (original)). The moisture content was adjusted to 55% water holding capacity and each BRS sample was incubated at 25 degrees C for a period of 119 days. After this period, Colwell P and 0.1 M H(2)SO(4) extractable P in BRS were determined. In addition, P sequential fractionation was carried out and the concentration of P in each pool was measured. A significant proportion (37% recovered in Colwell P and 48% in 0.1 M H(2)SO(4) extraction) of P added as DAP in BRS are available for plant use. The pH did not significantly affect 0.1 M H(2)SO(4) extractable P, while concentrations of Colwell P in the higher initial pH treatments (pH 7, 9 and 11) were greater than in the pH 4 treatments. The labile fractions (sum of NH(4)Cl (AP), bicarbonate and first sodium hydroxide extractable P (N(I)P)) consisted of 58-64% and 70-72% of total P in the medium and high DAP rate treatments, respectively. This indicates that most P added as DAP remained labile or moderately labile in BRS, either in

  18. A Longitudinal Study of Emotion Regulation, Emotion Lability-Negativity, and Internalizing Symptomatology in Maltreated and Nonmaltreated Children

    ERIC Educational Resources Information Center

    Kim-Spoon, Jungmeen; Cicchetti, Dante; Rogosch, Fred A.

    2013-01-01

    The longitudinal contributions of emotion regulation and emotion lability-negativity to internalizing symptomatology were examined in a low-income sample (171 maltreated and 151 nonmaltreated children, from age 7 to 10 years). Latent difference score models indicated that for both maltreated and nonmaltreated children, emotion regulation was a…

  19. Estimating rates and patterns of morphological evolution from phylogenies: lessons in limb lability from Australian Lerista lizards

    PubMed Central

    Wiens, John J

    2009-01-01

    Squamates (lizards and snakes) offer an exciting model system for research on the evolution of body form. A new phylogenetic study in BMC Evolutionary Biology of Australian lizards shows remarkable evolutionary lability in digit numbers among closely related species, but also highlights important challenges in this area. PMID:19291259

  20. Pyrolysis temperature affects phosphorus transformation in biochar: Chemical fractionation and (31)P NMR analysis.

    PubMed

    Xu, Gang; Zhang, You; Shao, Hongbo; Sun, Junna

    2016-11-01

    Phosphorus (P) recycling or reuse by pyrolyzing crop residue has recently elicited increased research interest. However, the effects of feedstock and pyrolysis conditions on P species have not been fully understood. Such knowledge is important in identifying the agronomic and environmental uses of biochar. Residues of three main Chinese agricultural crops and the biochars (produced at 300°C-600°C) derived from these crops were used to determine P transformations during pyrolysis. Hedley sequential fractionation and (31)P NMR analyses were used in the investigation. Our results showed that P transformation in biochar was significantly affected by pyrolysis temperature regardless of feedstock (Wheat straw, maize straw and peanut husk). Pyrolysis treatment transformed water soluble P into a labile (NaHCO3-Pi) or semi-labile pool (NaOH-Pi) and into a stable pool (Dil. HCl P and residual-P). At the same time, organic P was transformed into inorganic P fractions which was identified by the rapid decomposition of organic P detected with solution (31)P NMR. The P transformation during pyrolysis process suggested more stable P was formed at a higher pyrolysis temperature. This result was also evidenced by the presence of less soluble or stable P species, such as such as poly-P, crandallite (CaAl3(OH)5(PO4)2) and Wavellite (Al3(OH)3(PO4)2·5H2O), as detected by solid-state (31)P NMR in biochars formed at a higher pyrolysis temperature. Furthermore, a significant proportion of less soluble pyrophosphate was identified by solution (2%-35%) and solid-state (8%-53%) (31)P NMR, which was also responsible for the stable P forms at higher pyrolysis temperature although their solubility or stability requires further investigation. Results suggested that a relatively lower pyrolysis temperature retains P availability regardless of feedstock during pyrolysis process. Copyright © 2016. Published by Elsevier B.V.

  1. Differences in dissolved organic matter lability between alpine glaciers and alpine rock glaciers of the American West

    NASA Astrophysics Data System (ADS)

    Hall, E.; Fegel, T. S., II; Baron, J.; Boot, C. M.

    2015-12-01

    While alpine glaciers in montane regions represent the largest flux of dissolved organic matter (DOM) from global ice melt no research has examined the bioavailability of DOM melted out of glacial ice in the western continental United States. Furthermore, rock glaciers are an order of magnitude more abundant than ice glaciers in U.S., yet are not included in budgets for perennial ice carbon stores. Our research aims to understand differences in the bioavailability of carbon from ice glaciers and rock glaciers along the Central Rocky Mountains of Colorado. Identical microbial communities were fed standardized amounts of DOM from four different ice glacier-rock glaciers pairs. Using laboratory incubations, paired with mass spectrometry based metabolomics and 16S gene sequencing; we were able to examine functional definitions of DOM lability in glacial ice. We hypothesized that even though DOM quantities are similar in the outputs of both glacial types in our study area, ice glacial DOM would be more bioavailable than DOM from rock glaciers due to higher proportions of byproducts from microbial metabolism than rock glacier DOM, which has higher amounts of "recalcitrant" plant material. Our results show that DOM from ice glaciers is more labile than DOM from geologically and geographically similar paired rock glaciers. Ice glacier DOM represents an important pool of labile carbon to headwater ecosystems of the Rocky Mountains. Metabolomic analysis shows numerous compounds from varying metabolite pathways, including byproducts of nitrification before and after incubation, meaning that, similar to large maritime glaciers in Alaska and Europe, subglacial environments in the mountain ranges of the United States are hotspots for biological activity and processing of organic carbon.

  2. Efficient catalysis of Nazarov cyclization using a cationic iridium complex possessing adjacent labile coordination sites.

    PubMed

    Janka, Mesfin; He, Wei; Frontier, Alison J; Eisenberg, Richard

    2004-06-09

    The dicationic Ir(III) complex [IrMe(CO)(dppe)(DIB)](BARF)2 having adjacent labile sites has been found to be a very effective catalyst for promoting the Nazarov cyclization of aryl vinyl and divinyl ketones. Spectroscopic evidence for a substate-catalyst complex before cyclization is presented. The efficiency of the cyclization is attributed to the electrophilicity of the Ir(III) complex and substrate activation via chelation.

  3. A Model for Partitioning CO2 Flux and Calculating Transformation of Soil C Fractions

    NASA Astrophysics Data System (ADS)

    Zhang, S.; Noormets, A.; Tu, C.; King, J.

    2011-12-01

    It has been recognized that mechanistic understanding of soil organic carbon (SOC) mineralization requires partitioning of SOM to different sub-pools, whose turnover kinetics differ. Different fractionation methods have been developed to separate and analyze SOC fractions with different turnover rates, but some recent studies have called to questions earlier assumptions about chemical structure of C compounds and their recalcitrance to decomposition. To our knowledge, there is also no model that would bring together the information on various indicators of recalcitrance in a kinetic model framework . Here we deploy an analytical framework to partition soil net CO2 emissions to three density fractions (F1, F2, and F3, in the order of increasing density) in a peat soil and follow mineralization-related transformations (from lighter to heavier fractions). We followed the changes in total C content [C] and 13C of each three density fractions through a 3-month incubation study. We partitioned the CO2 produced by the soil between the different fractions using 13C and [C] change data. Applying this approach to a factorial experiment, we found that partitioning of CO2 emission and transformation rates among fractions differed between the organic top soil and deeper sandy soil. At depth of 45-75cm, almost no C was released through CO2 emission for all three fractions, while at 0-30cm, emission reached 0.2 g C/g soil over the incubation period, an average of 99% of which was from F2. Mineralization-related transformation rate at 45-75cm was 0.02 g soil/g soil with no significant differences among fractions. At 0-30cm, out of one gram of initial bulk soil, an average of 0.31g F1 transformed to F2, whereas no F2 was transformed to F3. Although the current study was carried out on a high-organic soil, the partitioning method is applicable to all soil types.

  4. Temperature effect on mineralization of SOM, plant litter and priming: modified by soil type?

    NASA Astrophysics Data System (ADS)

    Azzaroli Bleken, Marina; Berland Frøseth, Randi

    2015-04-01

    The purpose of this study was to provide improved temperature response functions to be used in models of soil organic carbon (SOC) and litter mineralization, with focus on the winter period. Our working hypothesis were: 1) decomposition of SOM and plant residue occurs also at temperature close to the freezing point; 2) the effect of temperature on SOC decomposition is stronger in clayey than in sandy soil; 3) decomposition and response to temperature of added plant litter is not affected by soil type. A silty clay loam (27% clay, 3% sand) and a sandy loam (6% clay, 51% sand) with similar weather and cultivation history were pre-incubated at about 15° C for about 4.5 months. Clover leaves labelled with 13C were added to half of the samples, and soil with and without clover was incubated for 142 days at 0, 4, 8.5 or 15 °C. Mineralization of SOC and clover leaves was observed also at 0° C. In the absence of added plant material, SOC decomposition followed a first order reaction which was twice as fast in the sandy soil as in the clay soil. The decomposition rate of clover leaves was also higher in the sandy soil than in the clay soil. However, the influence of temperature on SOC and on clover decomposition was the same in both soils. In presence of plant material, there was a positive priming effect on SOC, which initially correlated with decomposition of plant litter. There was a progressively lower priming effect at higher temperatures, particularly in the sandy soil, that could be understood as substrates exhaustion in a restricted volume of influence around the added clover leaves. We provide parameterised Arrhenius and alternative modifying linear temperature functions together with decay rates at reference temperature, which can be used for predicting decay rates of SOC per se and of the labile pool of clover leaves. We also show the superiority of these functions compared to the use of Q10 as temperature factor. Further, we suggest approaches for modelling

  5. Assessing the Selectivity of Extractant Solutions for Recovering Labile Arsenic Associated with Iron (Hydr)oxides and Sulfides in Sediments

    EPA Science Inventory

    Sequential extractions can provide analytical constraints on the identification of mineral phases that control arsenic speciation in sediments. Model solids were used in this study to evaluate different solutions designed to extract arsenic from relatively labile solid phases. ...

  6. Emotional Lability in Children and Adolescents with Attention Deficit/Hyperactivity Disorder (ADHD): Clinical Correlates and Familial Prevalence

    ERIC Educational Resources Information Center

    Sobanski, Esther; Banaschewski, Tobias; Asherson, Philip; Buitelaar, Jan; Chen, Wai; Franke, Barbara; Holtmann, Martin; Krumm, Bertram; Sergeant, Joseph; Sonuga-Barke, Edmund; Stringaris, Argyris; Taylor, Eric; Anney, Richard; Ebstein, Richard P.; Gill, Michael; Miranda, Ana; Mulas, Fernando; Oades, Robert D.; Roeyers, Herbert; Rothenberger, Aribert; Steinhausen, Hans-Christoph; Faraone, Stephen V.

    2010-01-01

    Background: The goal of this study was to investigate the occurrence, severity and clinical correlates of emotional lability (EL) in children with attention deficit/hyperactivity disorder (ADHD), and to examine factors contributing to EL and familiality of EL in youth with ADHD. Methods: One thousand, one hundred and eighty-six children with ADHD…

  7. Changes in Soil Carbon Turnover after Five Years of Bioenergy Cropping Systems from a Long-Term Incubation Experiment and Radiocarbon Measurements.

    NASA Astrophysics Data System (ADS)

    Szymanski, L. M.; Sanford, G. R.; Heckman, K. A.; Jackson, R. D.; Marin-Spiotta, E.

    2016-12-01

    In the face of climate change, the global production of bioenergy crops has increased in response to policies calling for non-fossil energy sources as a means to mitigate rising atmospheric carbon (C) concentrations. To provide overall C sequestration benefits, identifying biomass crops that can maintain or enhance soil resources is desirable for sustainable bioenergy production. The objective of our study was to compare the effects of four bioenergy cropping systems on SOM dynamics in two agricultural soils: Mollisols at the University of Wisconsin Agricultural Research Station in Arlington, Wisconsin and Alfisols at Kellogg Biological Station in Hickory Corners, Michigan, USA. We used fresh soils collected in 2013 and archived soils collected in 2008 to measure differences among biofuel crops after 5 years of management. Using a 365-day laboratory soil incubation and radiocarbon measurements of bulk soil and respired C, we separated soils into three SOM pools and determined their corresponding turnover times. Total soil C respired from surface soils increased in the order: mixed species perennials > monoculture perennials > monoculture annuals. More C was associated with the active fraction in the sandy loam Alfisol and with the slow-cycling fraction in the silt loam Mollisol. Radiocarbon content of respired CO2 did not differ between corn and switchgrass, but did differ between 2008 and 2013. The respiration of more radiocarbon-depleted C after 5 years of cultivation may be due to an initial flux of young C following tillage in 2008 or to depletion of labile plant inputs with continued harvest. All bioenergy cropping systems lost soil C after 5 years. Monoculture perennial switchgrass systems did not provide significant C sequestration benefits, as expected, compared to monoculture annual corn systems. Bioenergy crop land-use change affects soil C dynamics, with implications for assessing C costs associated with biofuel production.

  8. A Physically Based Framework for Modelling the Organic Fractionation of Sea Spray Aerosol from Bubble Film Langmuir Equilibria

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Burrows, Susannah M.; Ogunro, O.; Frossard, Amanda

    2014-12-19

    The presence of a large fraction of organic matter in primary sea spray aerosol (SSA) can strongly affect its cloud condensation nuclei activity and interactions with marine clouds. Global climate models require new parameterizations of the SSA composition in order to improve the representation of these processes. Existing proposals for such a parameterization use remotely-sensed chlorophyll-a concentrations as a proxy for the biogenic contribution to the aerosol. However, both observations and theoretical considerations suggest that existing relationships with chlorophyll-a, derived from observations at only a few locations, may not be representative for all ocean regions. We introduce a novel frameworkmore » for parameterizing the fractionation of marine organic matter into SSA based on a competitive Langmuir adsorption equilibrium at bubble surfaces. Marine organic matter is partitioned into classes with differing molecular weights, surface excesses, and Langmuir adsorption parameters. The classes include a lipid-like mixture associated with labile dissolved organic carbon (DOC), a polysaccharide-like mixture associated primarily with semi-labile DOC, a protein-like mixture with concentrations intermediate between lipids and polysaccharides, a processed mixture associated with recalcitrant surface DOC, and a deep abyssal humic-like mixture. Box model calculations have been performed for several cases of organic adsorption to illustrate the underlying concepts. We then apply the framework to output from a global marine biogeochemistry model, by partitioning total dissolved organic carbon into several classes of macromolecule. Each class is represented by model compounds with physical and chemical properties based on existing laboratory data. This allows us to globally map the predicted organic mass fraction of the nascent submicron sea spray aerosol. Predicted relationships between chlorophyll-\\textit{a} and organic fraction are similar to existing empirical

  9. [Effects of understory removal on soil labile organic carbon pool in a Cinnamomum camphora plantation].

    PubMed

    Wu, Ya-Cong; Li, Zheng-Cai; Cheng, Cai-Fang; Liu, Rong-Jie; Wang, Bin; Geri, Le-Tu

    2013-12-01

    Taking a 48-year-old Cinnamomum camphora plantation in the eastern area of our subtropics as test object, this paper studied the labile organic carbon contents and their ratios to the total organic carbon (TOC) in 0-60 cm soil layer under effects of understory removal (UR). As compared with no understory removal (CK), the soil TOC and easily-oxidized carbon (EOC) contents under UR decreased, with a decrement of 4.8% - 34.1% and 27.1% - 36.2%, respectively, and the TOC and EOC contents had a significant difference in 0-10 cm and 0-20 cm layers, respectively. The water-soluble organic carbon (WSOC) (except in 0-10 cm and 10-20 cm layers) and light fraction organic matter (LFOM) under UR increaesd, but the difference was not significant. The ratio of soil WSOC to soil TOC in UR stand was higher than that in CK stand, while the ratio of soil EOC to soil TOC showed an opposite trend. In the two stands, soil WSOC, EOC, and LFOM had significant or extremely significant correlations with soil TOC, and the correlation coefficients of soil EOC and LFOM with soil TOC were higher in UR stand than in CK, but the correlation coefficient between soil WSOC and TOC was in opposite. The soil EOC, LFOM, and TOC in the two stands were significantly or extremely significantly correlated with soil nutrients, but the soil WSOC in UR stand had no significant correlations with soil hydrolyzable N, available P, exchangeable Ca, and exchangeable Mg.

  10. Phosphorus Concentrations in Sequentially Fractionated Soil Samples as Affected by Digestion Methods

    PubMed Central

    do Nascimento, Carlos A. C.; Pagliari, Paulo H.; Schmitt, Djalma; He, Zhongqi; Waldrip, Heidi

    2015-01-01

    Sequential fractionation has helped improving our understanding of the lability and bioavailability of P in soil. Nevertheless, there have been no reports on how manipulation of the different fractions prior to analyses affects the total P (TP) concentrations measured. This study investigated the effects of sample digestion, filtration, and acidification on the TP concentrations determined by ICP-OES in 20 soil samples. Total P in extracts were either determined without digestion by ICP-OES, or ICP-OES following block digestion, or autoclave digestion. The effects of sample filtration, and acidification on undigested alkaline extracts prior to ICP-OES were also evaluated. Results showed that, TP concentrations were greatest in the block-digested extracts, though the variability introduced by the block-digestion was the highest. Acidification of NaHCO3 extracts resulted in lower TP concentrations, while acidification of NaOH randomly increased or decreased TP concentrations. The precision observed with ICP-OES of undigested extracts suggests this should be the preferred method for TP determination in sequentially extracted samples. Thus, observations reported in this work would be helpful in appropriate sample handling for P determination, thereby improving the precision of P determination. The results are also useful for literature data comparison and discussion when there are differences in sample treatments. PMID:26647644

  11. SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering.

    PubMed

    Van den Eynden, Jimmy; Fierro, Ana Carolina; Verbeke, Lieven P C; Marchal, Kathleen

    2015-04-23

    With the advances in high throughput technologies, increasing amounts of cancer somatic mutation data are being generated and made available. Only a small number of (driver) mutations occur in driver genes and are responsible for carcinogenesis, while the majority of (passenger) mutations do not influence tumour biology. In this study, SomInaClust is introduced, a method that accurately identifies driver genes based on their mutation pattern across tumour samples and then classifies them into oncogenes or tumour suppressor genes respectively. SomInaClust starts from the observation that oncogenes mainly contain mutations that, due to positive selection, cluster at similar positions in a gene across patient samples, whereas tumour suppressor genes contain a high number of protein-truncating mutations throughout the entire gene length. The method was shown to prioritize driver genes in 9 different solid cancers. Furthermore it was found to be complementary to existing similar-purpose methods with the additional advantages that it has a higher sensitivity, also for rare mutations (occurring in less than 1% of all samples), and it accurately classifies candidate driver genes in putative oncogenes and tumour suppressor genes. Pathway enrichment analysis showed that the identified genes belong to known cancer signalling pathways, and that the distinction between oncogenes and tumour suppressor genes is biologically relevant. SomInaClust was shown to detect candidate driver genes based on somatic mutation patterns of inactivation and clustering and to distinguish oncogenes from tumour suppressor genes. The method could be used for the identification of new cancer genes or to filter mutation data for further data-integration purposes.

  12. Peat decomposability in managed organic soils in relation to land use, organic matter composition and temperature

    NASA Astrophysics Data System (ADS)

    Bader, Cédric; Müller, Moritz; Schulin, Rainer; Leifeld, Jens

    2018-02-01

    Organic soils comprise a large yet fragile carbon (C) store in the global C cycle. Drainage, necessary for agriculture and forestry, triggers rapid decomposition of soil organic matter (SOM), typically increasing in the order forest < grassland < cropland. However, there is also large variation in decomposition due to differences in hydrological conditions, climate and specific management. Here we studied the role of SOM composition on peat decomposability in a variety of differently managed drained organic soils. We collected a total of 560 samples from 21 organic cropland, grassland and forest soils in Switzerland, monitored their CO2 emission rates in lab incubation experiments over 6 months at two temperatures (10 and 20 °C) and related them to various soil characteristics, including bulk density, pH, soil organic carbon (SOC) content and elemental ratios (C / N, H / C and O / C). CO2 release ranged from 6 to 195 mg CO2-C g-1 SOC at 10 °C and from 12 to 423 mg g-1 at 20 °C. This variation occurring under controlled conditions suggests that besides soil water regime, weather and management, SOM composition may be an underestimated factor that determines CO2 fluxes measured in field experiments. However, correlations between the investigated chemical SOM characteristics and CO2 emissions were weak. The latter also did not show a dependence on land-use type, although peat under forest was decomposed the least. High CO2 emissions in some topsoils were probably related to the accrual of labile crop residues. A comparison with published CO2 rates from incubated mineral soils indicated no difference in SOM decomposability between these soil classes, suggesting that accumulation of recent, labile plant materials that presumably account for most of the evolved CO2 is not systematically different between mineral and organic soils. In our data set, temperature sensitivity of decomposition (Q10 on average 2.57 ± 0.05) was the same for all land uses but lowest below 60

  13. Long-term variation in above and belowground plant inputs alters soil organic matter biogeochemistry at the molecular-level

    NASA Astrophysics Data System (ADS)

    Simpson, M. J.; Pisani, O.; Lin, L.; Lun, O.; Simpson, A.; Lajtha, K.; Nadelhoffer, K. J.

    2015-12-01

    The long-term fate of soil carbon reserves with global environmental change remains uncertain. Shifts in moisture, altered nutrient cycles, species composition, or rising temperatures may alter the proportions of above and belowground biomass entering soil. However, it is unclear how long-term changes in plant inputs may alter the composition of soil organic matter (SOM) and soil carbon storage. Advanced molecular techniques were used to assess SOM composition in mineral soil horizons (0-10 cm) after 20 years of Detrital Input and Removal Treatment (DIRT) at the Harvard Forest. SOM biomarkers (solvent extraction, base hydrolysis and cupric (II) oxide oxidation) and both solid-state and solution-state nuclear magnetic resonance (NMR) spectroscopy were used to identify changes in SOM composition and stage of degradation. Microbial activity and community composition were assessed using phospholipid fatty acid (PLFA) analysis. Doubling aboveground litter inputs decreased soil carbon content, increased the degradation of labile SOM and enhanced the sequestration of aliphatic compounds in soil. The exclusion of belowground inputs (No roots and No inputs) resulted in a decrease in root-derived components and enhanced the degradation of leaf-derived aliphatic structures (cutin). Cutin-derived SOM has been hypothesized to be recalcitrant but our results show that even this complex biopolymer is susceptible to degradation when inputs entering soil are altered. The PLFA data indicate that changes in soil microbial community structure favored the accelerated processing of specific SOM components with littler manipulation. These results collectively reveal that the quantity and quality of plant litter inputs alters the molecular-level composition of SOM and in some cases, enhances the degradation of recalcitrant SOM. Our study also suggests that increased litterfall is unlikely to enhance soil carbon storage over the long-term in temperate forests.

  14. Soil organic matter as sole indicator of soil degradation.

    PubMed

    Obalum, S E; Chibuike, G U; Peth, S; Ouyang, Y

    2017-04-01

    Soil organic matter (SOM) is known to play vital roles in the maintenance and improvement of many soil properties and processes. These roles, which largely influence soil functions, are a pool of specific contributions of different components of SOM. The soil functions, in turn, normally define the level of soil degradation, viewed as quantifiable temporal changes in a soil that impairs its quality. This paper aims at providing a generalized assessment of the current state of knowledge on the usefulness of SOM in monitoring soil degradation, based on its influence on the physical, chemical and biological properties and processes of soils. Emphasis is placed particularly on the effect of SOM on soil structure and availability of plant nutrients. Although these properties are discussed separately, the soil system is of dynamic and interactive nature, and changes in one property will likely affect other soil properties as well. Thus, functions of SOM almost always affect various soil properties and processes and engage in multiple reactions. In view of its role in soil aggregation and erosion control, in availability of plant nutrients and in ameliorating other forms of soil degradation than erosion, SOM has proven to be an important indicator of soil degradation. It has been suggested, however, that rather than the absolute amount, temporal change and potential amount of SOM be considered in its use as indicator of soil degradation, and that SOM may not be an all-purpose indicator. Whilst SOM remains a candidate without substitute as long as a one-parameter indicator of soil degradation is needed, narrowing down to the use of its labile and microbial components could be more appropriate, since early detection is important in the control and management of soil degradation.

  15. Effects of fermentation time and low temperature during the production process of Thai pickled fish (pla-som) on the viability and infectivity of Opisthorchis viverrini metacercariae.

    PubMed

    Onsurathum, Sudarat; Pinlaor, Porntip; Haonon, Ornuma; Chaidee, Apisit; Charoensuk, Lakhanawan; Intuyod, Kitti; Boonmars, Thidarut; Laummaunwai, Porntip; Pinlaor, Somchai

    2016-02-02

    Contamination of a popular fermented fish dish, pla-som, by Opisthorchis viverrini metacercariae (OVMC) is a possible cause of carcinogenic liver fluke infection in Thailand. Affected individuals are at risk of bile duct cancer, which is a major health problem for people in the Greater Mekong Subregion. In order to investigate concerns about food safety, we studied the effects of fermentation time and low temperature on the viability and infectivity of OVMC during the pla-som production process. Pla-som was prepared at room temperature for up to 1 week in duplicate experiments using cyprinid freshwater fish obtained from an O. viverrini-endemic area. OVMC were then isolated and identified under a stereomicroscope. Complete and viable OVMC were found on days 1-4 of fermentation, while their morphology was degenerated thereafter. After OVMC were fed to hamsters, the percentage of the worm recovery after 1 to 2 months of infection was 52%, 44.7%, 11.3% and 1% for days 1, 2, 3 and 4, respectively. In order to measure the effect of low temperature on OVMC, fish were kept in a refrigerator (4 °C) for up to five days and then subsequently fermented for three days. In fish stored in a refrigerator for 1 and 2 days, viable OVMC were clearly observed and were able to infect hamsters, a worm-recovery percentage of 3.3% and 12.7%, respectively. By contrast, in pla-som prepared from fish stored for 3 to 5 days, OVMC were degenerated and could not infect the host. In conclusion, pla-som fermentation for more than four days and refrigerating fish for three days before pla-som processing can prevent O. viverrini infection. This study may increase awareness of fermented-fish dish preparation to prevent liver fluke infection. Copyright © 2015 Elsevier B.V. All rights reserved.

  16. Processing thermally labile drugs by hot-melt extrusion: The lesson with gliclazide.

    PubMed

    Huang, Siyuan; O'Donnell, Kevin P; Delpon de Vaux, Sophie M; O'Brien, John; Stutzman, John; Williams, Robert O

    2017-10-01

    The formation of molecularly dispersed amorphous solid dispersions by the hot-melt extrusion technique relies on the thermal and mechanical energy inputs, which can cause chemical degradation of drugs and polymeric carriers. Additionally, drug degradation may be exacerbated as drugs convert from a more stable crystalline form to a higher energy amorphous form. Therefore, it is imperative to study how drug degrades and evaluate methods to minimize drug degradation during the extrusion process. In this work, gliclazide was used as a model thermally labile drug for the degradation kinetics and process optimization studies. Preformulation studies were conducted using thermal analyses, and liquid chromatography-mass spectroscopy to identify drug degradation pathways and to determine initial extrusion conditions. Formulations containing 10% drug and 90% AFFINISOL™ HPMC HME 100LV were then extruded using a twin screw extruder, and the extrudates were characterized using X-ray powder diffraction, modulated dynamic scanning calorimetry, and potency testing to evaluate physicochemical properties. The energies of activation for both amorphous gliclazide, crystalline gliclazide, and gliclazide solution were calculated using the Arrhenius equation to further guide the extrusion optimization process. Preformulation studies identify two hydrolysis degradation pathways of gliclazide at elevated temperatures. The activation energy study indicates a significantly higher degradation rate for the amorphous gliclazide compared to the crystalline form. After optimization of the hot-melt extrusion process, including improved screw designs, machine setup, and processing conditions, gliclazide amorphous solid dispersion with ∼95% drug recovery was achieved. The ability to process thermally labile drugs and polymers using hot-melt extrusion will significantly expand the possible applications of this manufacturing process. Copyright © 2017 Elsevier B.V. All rights reserved.

  17. Changes in metal mobility assessed by EDTA kinetic extraction in three polluted soils after repeated phytoremediation using a cadmium/zinc hyperaccumulator.

    PubMed

    Li, Zhu; Wu, Longhua; Luo, Yongming; Christie, Peter

    2018-03-01

    Phytoextraction is one of the most promising technologies for the decontamination of metal-polluted agricultural soils. Effects of repeated phytoextraction by the cadmium (Cd)/zinc (Zn) hyperaccumulator Sedum plumbizincicola on metal (Cd, Zn, copper (Cu) and lead (Pb)) mobility were investigated in three contaminated soils with contrasting properties. EDTA kinetic extraction and the two first-order reactions model showed advantages in the assessment of soil metal mobility and clearly discriminated changes in metal fractions induced by phytoextraction. Repeated phytoextraction led to large decreases in readily labile (Q 1 0 ) and less labile (Q 2 0 ) fractions of Cd and Zn in all three soils with the sole exception of an increase in the Q 2 0 of Zn in the highly polluted soil. However, Q 1 0 fractions of soil Cu and Pb showed apparent increases with the sole exception of Pb in the acid polluted soil but showed a higher desorption rate constant (k 1 ). Furthermore, S. plumbizincicola decreased the non-labile fraction (Q 3 0 ) of all metals tested, indicating that the hyperaccumulator can redistribute soil metals from non-labile to labile fractions. This suggests that phytoextraction decreased the mobility of the metals hyperaccumulated by the plant (Cd and Zn) but increased the mobility of the metals not hyperaccumulated (Cu and Pb). Thus, phytoextraction of soils contaminated with mixtures of metals must be performed carefully because of potential increases in the mobility of non-hyperaccumulated metals in the soil and the consequent environmental risks. Copyright © 2017 Elsevier Ltd. All rights reserved.

  18. Heat-labile Enterotoxins as Adjuvants or Anti-Inflammatory Agents

    PubMed Central

    Liang, Shuang; Hajishengallis, George

    2010-01-01

    Escherichia coli and Vibrio cholerae produce structurally related AB5-type heat-labile enterotoxins which are classified into two major types. The Type I subfamily includes cholera toxin and E. coli LT-I, whereas the Type II subfamily comprises LT-IIa and LT-IIb. In addition to their roles in microbial pathogenesis, the enterotoxins are widely and intensively studied for their exceptionally strong adjuvant and immunomodulatory activities, which are not necessarily dependent upon their abilities to elevate intracellular cAMP levels. Despite general structural similarities, these molecules, in intact or derivative form, display notable differences in their interactions with gangliosides or Toll-like receptors. This divergence results in differential immune response outcomes, the underlying mechanisms of which remain largely uncharacterized. Whereas the study of these molecules has been pivotal in understanding basic mechanisms of immune regulation, a formidable challenge is to dissociate toxicity from useful properties that can be exploited in vaccine development or for the treatment of autoimmune inflammatory diseases. PMID:20461887

  19. Heat-labile enterotoxins as adjuvants or anti-inflammatory agents.

    PubMed

    Liang, Shuang; Hajishengallis, George

    2010-01-01

    Escherichia coli and Vibrio cholerae produce structurally related AB5-type heat-labile enterotoxins, which are classified into two major types. The Type I subfamily includes cholera toxin and E. coli LT-I, whereas the Type II subfamily comprises LT-IIa and LT-IIb. In addition to their roles in microbial pathogenesis, the enterotoxins are widely and intensively studied for their exceptionally strong adjuvant and immunomodulatory activities, which are not necessarily dependent upon their abilities to elevate intracellular cAMP levels. Despite general structural similarities, these molecules, in intact or derivative form, display notable differences in their interactions with gangliosides or Toll-like receptors. This divergence results in differential immune response outcomes, the underlying mechanisms of which remain largely uncharacterized. Whereas the study of these molecules has been pivotal in understanding basic mechanisms of immune regulation, a formidable challenge is to dissociate toxicity from useful properties that can be exploited in vaccine development or for the treatment of autoimmune inflammatory diseases.

  20. Enantiomeric Excesses of Acid Labile Amino Acid Precursors of the Murchison Meteorite

    NASA Astrophysics Data System (ADS)

    Pizzarello, Sandra

    1998-10-01

    Amino acids present in carbonaceous chondrite are extracted in water in part as free compounds and in approximately equal part as acid labile precursors. On the assumption that they would be free of contamination, the precursors of two Murchison amino acids that have terrestrial occurrence, alanine and glutamic acid, have been targeted for analysis of their enantiomeric ratios. Pyroglutamic acid, the precursor of glutamic acid, was found with an L-enantiomeric excess comparable to that of the free acid, while alanine's precursor, N-acetyl alanine, appears approximately racemic. Also alpha-imino propioacetic acid, a proposed end product of alanine synthesis in the meteorite, was analyzed and found racemic.

  1. Enantiomeric Excesses of Acid Labile Amino Acid Precursors of the Murchison Meteorite

    NASA Technical Reports Server (NTRS)

    Pizzarello, Sandra

    1998-01-01

    Amino acids present in carbonaceous chondrite are extracted in water in part as free compounds and in approximately equal part as acid labile precursors. On the assumption that they would be free of contamination, the precursors of two Murchison amino acids that have terrestrial occurrence, alanine and glutamic acid, have been targeted for analysis of their enantiomeric ratios. Pyroglutamic acid, the precursor of glutamic acid, was found with an L-enantiomeric excess comparable to that of the free acid, while alanine's precursor, N-acetyl alanine, appears approximately racemic. Also alpha-imino propioacetic acid, a proposed end product of alanine synthesis in the meteorite, was analyzed and found racemic.

  2. Carbon and nitrogen inputs affect soil microbial community structure and function

    NASA Astrophysics Data System (ADS)

    Liu, X. J. A.; Mau, R. L.; Hayer, M.; Finley, B. K.; Schwartz, E.; Dijkstra, P.; Hungate, B. A.

    2016-12-01

    Climate change has been projected to increase energy and nutrient inputs to soils, affecting soil organic matter (SOM) decomposition (priming effect) and microbial communities. However, many important questions remain: how do labile C and/or N inputs affect priming and microbial communities? What is the relationship between them? To address these questions, we applied N (NH4NO3 ; 100 µg N g-1 wk-1), C (13C glucose; 1000 µg C g-1 wk-1), C+N to four different soils for five weeks. We found: 1) N showed no effect, whereas C induced the greatest priming, and C+N had significantly lower priming than C. 2) C and C+N additions increased the relative abundance of actinobacteria, proteobacteria, and firmicutes, but reduced relative abundance of acidobacteria, chloroflexi, verrucomicrobia, planctomycetes, and gemmatimonadetes. 3) Actinobacteria and proteobacteria increased relative abundance over time, but most others decreased over time. 4) substrate additions (N, C, C+N) significantly reduced microbial alpha diversity, which also decreased over time. 5) For beta diversity, C and C+N formed significantly different communities compare to the control and N treatments. Overtime, microbial community structure significantly altered. Four soils have drastically different community structures. These results indicate amounts of substrate C were determinant factors in modulating the rate of SOM decomposition and microbial communities. Variable responses of different microbial communities to labile C and N inputs indicate that complex relationships between priming and microbial functions. In general, we demonstrate that energy inputs can quickly accelerate SOM decomposition whereas extra N input can slow this process, though both had similar microbial community responses.

  3. Lability landscape and protease resistance of human insulin amyloid: a new insight into its molecular properties.

    PubMed

    Malisauskas, Mantas; Weise, Christoph; Yanamandra, Kiran; Wolf-Watz, Magnus; Morozova-Roche, Ludmilla

    2010-02-12

    Amyloid formation is a universal behavior of proteins central to many important human pathologies and industrial processes. The extreme stability of amyloids towards chemical and proteolytic degradation is an acquired property compared to the precursor proteins and is a major prerequisite for their accumulation. Here, we report a study on the lability of human insulin amyloid as a function of pH and amyloid ageing. Using a range of methods such as atomic force microscopy, thioflavin T fluorescence, circular dichroism, and gas-phase electrophoretic mobility macromolecule analysis, we probed the propensity of human insulin amyloid to propagate or dissociate in a wide span of pH values and ageing in a low concentration regime. We generated a three-dimensional amyloid lability landscape in coordinates of pH and amyloid ageing, which displays three distinctive features: (i) a maximum propensity to grow near pH 3.8 and an age corresponding to the inflection point of the growth phase, (ii) an abrupt cutoff between growth and disaggregation at pH 8-10, and (iii) isoclines shifted towards older age during the amyloid growth phase at pH 4-9, reflecting the greater stability of aged amyloid. Thus, lability of amyloid strongly depends on the ionization state of insulin and on the structure and maturity of amyloid fibrils. The stability of insulin amyloid towards protease K was assessed by using real-time atomic force microscopy and thioflavin T fluorescence. We estimated that amyloid fibrils can be digested both from the free ends and within the length of the fibril with a rate of ca 4 nm/min. Our results highlight that amyloid structures, depending on solution conditions, can be less stable than commonly perceived. These results have wide implications for understanding the propagation of amyloids via a seeding mechanism as well as for understanding their natural clearance and dissociation under solution conditions unfavorable for amyloid formation in biological systems and

  4. Hemodynamic changes in systolic and diastolic function during isoproterenol challenge predicts symptomatic response to myectomy in hypertrophic cardiomyopathy with labile obstruction.

    PubMed

    Prasad, Megha; Geske, Jeffrey B; Sorajja, Paul; Ommen, Steve R; Schaff, Hartzell V; Gersh, Bernard J; Nishimura, Rick A

    2016-11-15

    We aimed to assess the utility of changes in systolic and diastolic function by isoproterenol challenge in predicting symptom resolution post-myectomy in selected patients with hypertrophic cardiomyopathy (HCM) and labile obstruction. In a subset of symptomatic HCM patients without resting/provocable obstruction on noninvasive assessment, isoproterenol challenge during hemodynamic catheterization may elicit labile left ventricular outflow tract (LVOT) obstruction, and demonstrate the effect of obstruction on diastolic function. These changes may determine whether patients achieve complete symptom resolution post-myectomy. Between February 2003 and April 2009, 18 symptomatic HCM patients without LVOT obstruction on noninvasive testing underwent isoproterenol provocation and septal myectomy due to presence of provocable gradient and were followed for 4 (IQR 3-7) years. Thirteen (72.2%) had complete symptom resolution, while 5 (27.8%) had improved, but persistent symptoms. Those with provoked gradient >100 mm Hg or increase in left atrial pressure (LAP) with isoproterenol had symptom resolution. Symptomatic HCM patients without LVOT gradient on noninvasive testing may demonstrate labile obstruction with isoproterenol. With isoproterenol, patients with high LVOT gradient or increase in LAP concomitant with an increase in gradient achieved complete symptom resolution post-myectomy. Thus, improved diastolic filling as well as outflow gradient production in patients with HCM may predict symptom response to myectomy. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  5. Mechanistic Representation of Soil C Dynamics: for Arctic Ecosystem

    NASA Astrophysics Data System (ADS)

    Dwivedi, D.; Riley, W. J.; Bisht, G.

    2013-12-01

    Arctic and sub-Arctic soils store vast amounts of carbon, approximately 1700 billion metric tones of frozen organic carbon. This carbon is susceptible to release to the atmosphere due to environmental changes (e.g., rapidly evolving landscape, warming); however, the mechanisms responsible for this susceptibility of soil organic matter (SOM) are not well understood, and uncertainties exist in terms of their representation in Earth System models. The representation of SOM dynamics in Earth System Models is critical for future climate prediction. To investigate the impacts of various physical (e.g., multi-phase transport, sorption, desorption, temperature), chemical (e.g., pH), and biological (e.g., microbial activity, enzyme dynamics) factors on SOM stability, we have developed CENTURY-like (describing labile and recalcitrant pools) and complex (describing multiple archetypal polymers and monomers C substrate groups) reaction networks. These reaction networks are integrated in a three-dimensional, multi-phase reactive transport solver (PFLOTRAN) and include representations of bacterial and fungal activity as well as population dynamics, gaseous and aqueous advection, and adsorption and desorption. We test and compare these reaction networks in PFLOTRAN to accurately predict depth-resolved soil organic matter (SOM) in the subsurface. We present results showing impacts of abiotic controls (e.g., surface interactions and temperature) on the long-term stabilization of SOM under permafrost conditions.

  6. Organic carbon characteristics in density fractions of soils with contrasting mineralogies

    NASA Astrophysics Data System (ADS)

    Yeasmin, Sabina; Singh, Balwant; Johnston, Cliff T.; Sparks, Donald L.

    2017-12-01

    This study was aimed to evaluate the role of minerals in the preservation of organic carbon (OC) in different soil types. Sequential density fractionation was done to isolate particulate organic matter (POM, <1.8 g cm-3) and mineral associated OM (MOM: 1.8-2.2, 2.2-2.6 and >2.6 g cm-3) from four soils, i.e., a Ferralsol, a Luvisol, a Vertisol and a Solonetz. Organic matter (OM) in the density fractions was characterised using diffuse reflectance Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy and mass spectroscopy in the original states (i.e., without any chemical pre-treatment), and after 6% sodium hypochlorite (NaOCl) and 10% hydrofluoric acid (HF) treatments. The NaOCl oxidation resistant fraction was considered as a relatively stable pool of OC and the HF soluble fraction was presumed as the mineral bound OC. Phyllosilicate-dominated soils, i.e., Vertisol, Luvisol and Solonetz, contained a greater proportion of POM than Fe and Al oxide-dominated Ferralsol. Wider C:N ratio and lower δ13C and δ15N in POM suggest the dominance of labile OC in this fraction and this was also supported by a greater proportion of NaOCl oxidised OC in the same fraction that was enriched with aliphatic C. The sequential density fractionation method effectively isolated OM into three distinct groups in the soils: (i) OM associated with Fe and Al oxides (>1.8 g cm-3 in the Ferralsol); (ii) OM associated with phyllosilicates (1.8-2.6 g cm-3) and (iii) OM associated with quartz and feldspar (>2.6 g cm-3) in the other three soils. Greater oxidation resistance, and more dissolution of OC during the HF treatment in the Fe and Al oxides dominated fractions suggest a greater potential of these minerals to protect OC from oxidative degradation as compared to the phyllosilicates, and quartz and feldspar matrices. OM associated with Fe and Al oxides was predominantly aromatic and carboxylate C. Decreased C:N ratio in the NaOCl oxidation resistant OM and HF soluble OM of

  7. Changes in Soil Organic Matter Abundance, Molecular Composition, and Diversity in an Arid Ecosystem in Response to Long-term Elevated CO2 Manipulation.

    NASA Astrophysics Data System (ADS)

    Hess, N. J.; Tfaily, M.; Evans, R. D.; Koyama, A.

    2017-12-01

    Little is known about how soils in arid ecosystems will respond to rising atmospheric CO2 concentration yet arid and semi-arid ecosystems cover more than 40% of Earth's land surface. Previous work in the Mojave Desert (Evans et al., 2014 Nature Climate Change) reported higher soil organic carbon (SOC) and total nitrogen (N) concentrations following 10 years exposure to elevated atmospheric CO2 at the Nevada Desert Free-Air-Carbon dioxide-Enrichment (FACE) Facility (NDFF). In this study, we investigated potential mechanisms that resulted in increased SOC and total N accumulation and stabilization using high resolution mass spectrometry at the NDFF site. Samples were collected from soil profiles to 1 m in depth with a 0.2 m a increment under the dominant evergreen shrub Larrea tridentata. The differences in the molecular composition and diversity of soil organic matter (SOM) were more evident in surface soils and declined with depth, and were consistent with higher SOC and total N concentrations under elevated than ambient CO2. Our molecular analysis also suggested increased root exudation and/or microbial necromass from stabilization of labile C and N contributed to SOM and N stocks. Increased microbial activity and metabolism under elevated CO2 compared to ambient plots suggested that elevated CO2 altered microbial carbon (C) use patterns, reflecting changes in the quality and quantity of SOC inputs. We found that plant-derived compounds were primary substrates for microbial activity under elevated CO2 and microbial products were the main constituents of stabilized SOM. Our results suggest that arid ecosystems are a potential large C sink under elevated CO2, give the extensive coverage of the land surface, and that labile compounds are transformed to stable SOM via microbial processes. Arid systems are limited by water, and thus may have a different C storage potential under changing climates than other ecosystems that are limited by nitrogen or phosphorus.

  8. A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury

    DTIC Science & Technology

    2009-10-01

    SUBJECT TERMS Traumatic Brain Injury, Alcohol Use , Mood , Mood Stabilization 16. SECURITY CLASSIFICATION OF: U 17. LIMITATION OF ABSTRACT 18...1995 for this indication. Also, it is used in conjunction with lithium or carbamazepine to prevent recurrent manic or depressive episodes during long...0652 TITLE: A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury PRINCIPAL

  9. Comparison of hamstring and quadriceps femoris electromyographic activity between men and women during a single-limb squat on both a stable and labile surface.

    PubMed

    Youdas, James W; Hollman, John H; Hitchcock, James R; Hoyme, Gregory J; Johnsen, Jeremiah J

    2007-02-01

    The purpose of this study was to determine if women are quadriceps dominant and men are hamstring dominant during the performance of a partial single-leg squat (SLS) on both a stable and labile ground surface against body weight resistance. Thirty healthy participants (15 men and 15 women) performed an SLS on both a stable surface and a 6.4-cm-thick vinyl pad. Surface electromyographic (EMG) recordings were obtained from the quadriceps femoris and hamstring muscles during the extension phase of the SLS. Statistical analysis revealed that women produced 14% more EMG activity (p = 0.04) in their quadriceps than the men during the SLS on a stable surface, whereas the men generated 18% more EMG activity (p = 0.04) in their hamstrings than the women during the SLS on a labile surface. Additionally, we found a statistically significant sex effect (p = 0.048) for the hamstring/quadriceps (H/Q) EMG ratio, which was 2.25 and 0.62, respectively, for men and women on the stable surface and 2.52 and 0.71, respectively, on the labile surface. We concluded that women are quadriceps dominant and men are hamstring dominant during the performance of SLS against body weight resistance on either a stable or labile surface condition. During an SLS, men showed an H/Q ratio approximately 3.5 times larger than their female counterparts, suggesting that men activate their hamstrings more effectively than women during an SLS. According to our data, the SLS may not be an ideal exercise for activating the hamstring muscles in women without additional neuromuscular training techniques, because women are quadriceps dominant during the SLS.

  10. [Effects of precipitation intensity on soil organic carbon fractions and their distribution under subtropical forests of South China].

    PubMed

    Chen, Xiao-mei; Liu, Ju-xiu; Deng, Qi; Chu, Guo-wei; Zhou, Guo-yi; Zhang, De-qiang

    2010-05-01

    From December 2006 to June 2008, a field experiment was conducted to study the effects of natural precipitation, doubled precipitation, and no precipitation on the soil organic carbon fractions and their distribution under a successional series of monsoon evergreen broad-leaf forest, pine and broad-leaf mixed forest, and pine forest in Dinghushan Mountain of Southern China. Different precipitation treatments had no significant effects on the total organic carbon (TOC) concentration in the same soil layer under the same forest type (P > 0.05). In treatment no precipitation, particulate organic carbon (POC) and light fraction organic carbon (LFOC) were mainly accumulated in surface soil layer (0-10 cm); but in treatments natural precipitation and doubled precipitation, the two fractions were infiltrated to deeper soil layers. Under pine forest, soil readily oxidizable organic carbon (ROC) was significantly higher in treatment no precipitation than in treatments natural precipitation and doubled precipitation (P < 0.05). The percentage of soil POC, ROC, and LFOC to soil TOC was much greater under the forests at early successional stage than at climax stage, suggesting that the forest at early successional stage might not be an ideal place for soil organic carbon storage. Precipitation intensity less affected TOC, but had greater effects on the labile components POC, ROC, and LFOC.

  11. Soil organic matter-hydrogen peroxide dynamics in the treatment of contaminated soils and groundwater using catalyzed H2O2 propagations (modified Fenton's reagent).

    PubMed

    Bissey, Lauren L; Smith, Jeffrey L; Watts, Richard J

    2006-07-01

    The interactions between catalyzed H(2)O(2) propagations (CHP-i.e. modified Fenton's reagent) and soil organic matter (SOM) during the treatment of contaminated soils and groundwater was studied in a well-characterized surface soil. The fate of two fractions of SOM, particulate organic matter (POM) and nonparticulate organic matter (NPOM), during CHP reactions was evaluated using concentrations of hydrogen peroxide from 0.5 to 3M catalyzed by soluble iron (III), an iron (III)-ethylenediamine tetraacetic acid (EDTA) chelate, or naturally-occurring soil minerals. The destruction of total SOM in CHP systems was directly proportional to the hydrogen peroxide dosage, and was significantly greater at pH 3 than at neutral pH; furthermore, SOM destruction occurred predominantly in the NPOM fraction. At pH 3, SOM did not affect hydrogen peroxide decomposition rates or hydroxyl radical activity in CHP reactions. However, at neutral pH, increasing the mass of SOM decreased the hydrogen peroxide decomposition rate and increased the rate of hydroxyl radical generation in CHP systems. These results show that, while CHP reactions destroy some of the organic carbon pools, SOM does not have a significant effect on the CHP treatment of soils and groundwater.

  12. Assessment of a geochemical extraction procedure to determine the solid phase fractionation and bioaccessibility of potentially harmful elements in soils: a case study using the NIST 2710 reference soil.

    PubMed

    Wragg, Joanna; Cave, Mark

    2012-04-13

    Three mineral acid sequential extraction regimes (HNO(3) only, HNO(3) followed by HCl and aqua regia) were applied to the NIST 2710 contaminated reference soil. The major and trace element chemical analysis data from the extractions were subjected to a chemometric self-modelling mixture resolution procedure which identified that 12 distinct physico-chemical components were extracted. The fractionation of As, Cd, Ni and Pb between these components were determined. Tentative assignments of the mineralogical sources of the components were made. The human ingestion bioaccessible fraction of As, Cd and Pb were determined using the in vitro BARGE UBM bioaccessibility test and were found to be 51.6%, 68.0% and 68.4% respectively. The relationship between the lability of the physico-chemical components and the bioaccessible fraction of the soils was investigated and the bioaccessible fractions were assigned to specific components. The extraction scheme using aqua regia was found to be the most suitable as it was the only one which extracted the iron sulphide phase in the soil. Copyright © 2012 Elsevier B.V. All rights reserved.

  13. Substrate biochemistry control on the pathways for the formation of soil organic matter

    NASA Astrophysics Data System (ADS)

    Almeida, L. F.; Hurtarte, L. C.; Souza, I. F.; Barros, E. M.; Vergutz, L.; Silva, I. R.

    2017-12-01

    Linking plant litter biochemistry, its decomposition and soil organic matter (SOM) formation is not straightforward. To address this issue, we evaluated the decomposition of four biochemical fractions operationally defined as i) hot-water extractable (HWE), ii) total solvent (acetone) extractable (TSE), iii) acid-base (HNO3-KOH) unhydrolyzable cellulosic fraction (CF), and iv) acid(H2SO4) unhydrolyzable (AUR) and the transfer of C from these fractions to SOM. Each biochemical fraction was Soxhlet-extracted from isotopically labeled (13C) leaves, twigs, bark and roots of eucalypt plants (120 days old). The molecular composition of each fraction was inferred from thermochemolysis with tertamethylammonium (TMAH), followed by gas chromatography coupled o mass spectrometry (GC-MS). For the incubation, we collected soil samples from the topsoil (0-20 cm) of a sandy-clay loam, kaolinitic Typic Hapludox (Haplic Ferralsol). Four plant organs and four biochemical fractions were arranged into a (4 4) + 1 factorial scheme, including one control treatment (soil only). The samples were incubated at 80% of their water-holding capacity and kept under controlled temperature (25 ºC). The decomposition of the biochemical fractions was monitored by determining the CO2 concentration into the headspace of the vials. Finished the incubation, soil samples were submitted to density followed by particle-size fractionation. HWE and CF was decomposed at faster rates than TSE and AUR throughout the incubation. The soil fraction <53 µm retained a significantly higher proportion of the initial input of HWE (32%) and AUR (31%) than TSE (19%) or CF (15%). Light fraction organic matter (LFOM) with density <1.8 g cm-3, retained a significant proportion of AUR (37%) and TSE (32%) while CF was mostly lost as CO2 (79%). Selective preservation of organic materials (e.g., long-chain lipids) within AUR and TSE fractions appears to be a significant pathway for SOM formation. A microbial-driven pathway

  14. Contrasting effects of elevated CO2 and warming on temperature sensitivity of soil organic matter decomposition in a Chinese paddy field.

    PubMed

    Chen, Zhaozhi; Wang, Bingyu; Wang, Jinyang; Pan, Genxing; Xiong, Zhengqin

    2015-10-01

    Climate changes including elevated CO2 and temperature have been known to affect soil carbon (C) storage, while the effects of climate changes on the temperature sensitivity of soil organic matter (SOM) are unclear. A 365-day laboratory incubation was used to investigate the temperature sensitivity for decomposition of labile (Q 10-L) and recalcitrant (Q 10-R) SOMs by comparing the time required to decompose a given amount of C at 25 and 35 °C. Soils were collected from a paddy field that was subjected to four treatments: ambient CO2 and temperature, elevated CO2 (500 μmol/mol), enhanced temperature (+2 °C), and their combination. The results showed that the temperature sensitivity of SOM decomposition increased with increasing SOM recalcitrance in this paddy soil (Q 10-L = 2.21 ± 0.16 vs. Q 10-R = 2.78 ± 0.42; mean ± SD). Elevated CO2 and enhanced temperature showed contrasting effects on the temperature sensitivity of SOM decomposition. Elevated CO2 stimulated Q 10-R but had no effect on Q 10-L; in contrast, enhanced temperature increased Q 10-L but had no effect on Q 10-R. Furthermore, the elevated CO2 combined with enhanced temperature treatment significantly increased Q 10-L and Q 10-R by 18.9 and 10.2 %, respectively, compared to the ambient conditions. Results suggested that the responses of SOM to temperature, especially for the recalcitrant SOM pool, were altered by climate changes. The greatly enhanced temperature sensitivity of SOM decomposition by elevated CO2 and temperature indicates that more CO2 will be released to the atmosphere and losses of soil C may be even greater than that previously expected in paddy field.

  15. CeO2-Y2O3-ZrO2 Membrane with Enhanced Molten Salt Corrosion Resistance for Solid Oxide Membrane (SOM) Electrolysis Process

    NASA Astrophysics Data System (ADS)

    Zou, Xingli; Li, Xin; Shen, Bin; Lu, Xionggang; Xu, Qian; Zhou, Zhongfu; Ding, Weizhong

    2017-02-01

    Innovative CeO2-Y2O3-ZrO2 membrane has been successfully developed and used in the solid oxide membrane (SOM) electrolysis process for green metallic materials production. The x mol pct ceria/(8- x) mol pct yttria-costabilized zirconia ( xCe(8- x)YSZ, x = 0, 1, 4, or 7) membranes have been fabricated and investigated as the membrane-based inert anodes to control the SOM electroreduction process in molten salt. The characteristics of these fabricated xCe(8- x)YSZ membranes including their corrosion resistances in molten salt and their degradation mechanisms have been systematically investigated and compared. The results show that the addition of ceria in the YSZ-based membrane can inhibit the depletion of yttrium during the SOM electrolysis, which thus makes the ceria-reinforced YSZ-based membranes possess enhanced corrosion resistances to molten salt. The ceria/yttria-costabilized zirconia membranes can also provide reasonable oxygen ion conductivity during electrolysis. Further investigation shows that the newly modified 4Ce4YSZ ceramic membrane has the potential to be used as novel inert SOM anode for the facile and sustainable production of metals/alloys/composites materials such as Si, Ti5Si3, TiC, and Ti5Si3/TiC from their metal oxides precursors in molten CaCl2.

  16. Quantitative chemical exchange saturation transfer (qCEST) MRI - omega plot analysis of RF-spillover-corrected inverse CEST ratio asymmetry for simultaneous determination of labile proton ratio and exchange rate.

    PubMed

    Wu, Renhua; Xiao, Gang; Zhou, Iris Yuwen; Ran, Chongzhao; Sun, Phillip Zhe

    2015-03-01

    Chemical exchange saturation transfer (CEST) MRI is sensitive to labile proton concentration and exchange rate, thus allowing measurement of dilute CEST agent and microenvironmental properties. However, CEST measurement depends not only on the CEST agent properties but also on the experimental conditions. Quantitative CEST (qCEST) analysis has been proposed to address the limitation of the commonly used simplistic CEST-weighted calculation. Recent research has shown that the concomitant direct RF saturation (spillover) effect can be corrected using an inverse CEST ratio calculation. We postulated that a simplified qCEST analysis is feasible with omega plot analysis of the inverse CEST asymmetry calculation. Specifically, simulations showed that the numerically derived labile proton ratio and exchange rate were in good agreement with input values. In addition, the qCEST analysis was confirmed experimentally in a phantom with concurrent variation in CEST agent concentration and pH. Also, we demonstrated that the derived labile proton ratio increased linearly with creatine concentration (P < 0.01) while the pH-dependent exchange rate followed a dominantly base-catalyzed exchange relationship (P < 0.01). In summary, our study verified that a simplified qCEST analysis can simultaneously determine labile proton ratio and exchange rate in a relatively complex in vitro CEST system. Copyright © 2015 John Wiley & Sons, Ltd.

  17. Lability of secondary organic particulate matter

    PubMed Central

    Liu, Pengfei; Li, Yong Jie; Wang, Yan; Gilles, Mary K.; Zaveri, Rahul A.; Bertram, Allan K.

    2016-01-01

    The energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representative of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate Dorg for the biogenic case is at least 103 times greater than that of the anthropogenic case. These differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere. PMID:27791063

  18. Lability of secondary organic particulate matter

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Liu, Pengfei; Li, Yong Jie; Wang, Yan

    2016-10-24

    We report the energy flows in Earth’s natural and modified climate systems are strongly influenced by the concentrations of atmospheric particulate matter (PM). For predictions of concentration, equilibrium partitioning of semivolatile organic compounds (SVOCs) between organic PM and the surrounding vapor has widely been assumed, yet recent observations show that organic PM can be semisolid or solid for some atmospheric conditions, possibly suggesting that SVOC uptake and release can be slow enough that equilibrium does not prevail on timescales relevant to atmospheric processes. Herein, in a series of laboratory experiments, the mass labilities of films of secondary organic material representativemore » of similar atmospheric organic PM were directly determined by quartz crystal microbalance measurements of evaporation rates and vapor mass concentrations. There were strong differences between films representative of anthropogenic compared with biogenic sources. For films representing anthropogenic PM, evaporation rates and vapor mass concentrations increased above a threshold relative humidity (RH) between 20% and 30%, indicating rapid partitioning above a transition RH but not below. Below the threshold, the characteristic time for equilibration is estimated as up to 1 wk for a typically sized particle. In contrast, for films representing biogenic PM, no RH threshold was observed, suggesting equilibrium partitioning is rapidly obtained for all RHs. The effective diffusion rate D org for the biogenic case is at least 10 3 times greater than that of the anthropogenic case. In conclusion, these differences should be accounted for in the interpretation of laboratory data as well as in modeling of organic PM in Earth’s atmosphere.« less

  19. Recovery and fractionation of phosphorus retained by lightweight expanded shale and masonry sand used as media in subsurface flow treatment wetlands.

    PubMed

    Forbes, Margaret G; Dickson, Kenneth L; Saleh, Farida; Waller, William T; Doyle, Robert D; Hudak, Paul

    2005-06-15

    Most subsurface flow treatment wetlands, also known as reed bed or root zone systems, use sand or gravel substrates to reduce organics, solids, and nutrients in septic tank effluents. Phosphorus (P) retention in these systems is highly variable and few studies have identified the fate of retained P. In this study, two substrates, expanded shale and masonry sand, were used as filter media in five subsurface flow pilot-scale wetlands (2.7 m3). After 1 year of operation, we estimated the annual rate of P sorption by taking the difference between total P (TP) of substrate in the pilot cells and TP of substrate not exposed to wastewater (control). Means and standard deviations of TP retained by expanded shale were 349 +/- 171 mg kg(-1), respectively. For a substrate depth of 0.9 m, aerial P retention by shale was 201 +/- 98.6 g of P m(-2) year(-1), respectively. Masonry sand retained an insignificant quantity of wastewater P (11.9 +/- 21.8 mg kg(-1)) and on occasion exported P. Substrate samples were also sequentially fractionated into labile P, microbial P, (Fe + Al) P, humic P, (Ca + Mg) P, and residual P. In expanded shale samples, the greatest increase in P was in the relatively permanent form of (Fe + Al) P (108 mg kg(-1)), followed by labile P (46.7 mg kg(-1)) and humic P (39.8 mg kg(-1)). In masonry sand, there was an increase in labile P (9.71 mg kg(-1)). Results suggest that sand is a poor candidate for long-term P storage, but its efficiency is similar to that reported for many sand, gravel, and rock systems. By contrast, expanded shale and similar products with high hydraulic conductivity and P sorption capacity could greatly improve performance of P retention in constructed wetlands.

  20. Labile, dissolved and particulate PAHs and trace metals in wastewater: passive sampling, occurrence, partitioning in treatment plants.

    PubMed

    Gourlay-Francé, C; Bressy, A; Uher, E; Lorgeoux, C

    2011-01-01

    The occurrence and the partitioning of polycyclic aromatic hydrocarbons (PAHs) and seven metals (Al, Cd, Cr, Cu, Ni, Pb and Zn) were investigated in activated sludge wastewater treatment plants by means of passive and active sampling. Concentrations total dissolved and particulate contaminants were determined in wastewater at several points across the treatment system by means of grab sampling. Truly dissolved PAHs were sampled by means of semipermeable membrane devices. Labile (inorganic and weakly complexed) dissolved metals were also sampled using the diffusive gradient in thin film technique. This study confirms the robustness and the validity of these two passive sampling techniques in wastewater. All contaminant concentrations decreased in wastewater along the treatment, although dissolved and labile concentrations sometimes increased for substances with less affinity with organic matter. Solid-liquid and dissolved organic matter/water partitioning constants were estimated. The high variability of both partitioning constants for a simple substance and the poor relation between K(D) and K(OW) shows that the binding capacities of particles and organic matter are not uniform within the treatment and that other process than equilibrium sorption affect contaminant repartition and fate in wastewater.

  1. Effect of angiotensin II on iron-transporting protein expression and subsequent intracellular labile iron concentration in human glomerular endothelial cells.

    PubMed

    Tajima, Soichiro; Tsuchiya, Koichiro; Horinouchi, Yuya; Ishizawa, Keisuke; Ikeda, Yasumasa; Kihira, Yoshitaka; Shono, Masayuki; Kawazoe, Kazuyoshi; Tomita, Shuhei; Tamaki, Toshiaki

    2010-07-01

    Angiotensin II (Ang II)-induced endothelial injury, which is associated with atherosclerosis, is believed to be mediated by intracellular reactive oxygen species (ROS) through stimulation of nicotinamide adenine dinucleotide phosphate oxidase (NOX). Iron is essential for the amplification of oxidative stress. In this study, we investigated whether Ang II altered iron metabolism and whether the Ang II-induced endothelial injury is attributable to changes in iron metabolism of human glomerular endothelial cells (HGECs). When 90% iron-saturated human transferrin (90% Tf) was applied to HGECs without Ang II, the labile ferrous iron level was same as the effect of control in spite of a significant increase in the total cellular iron concentration. Treatment with Ang II and 30% Tf or 90% Tf significantly (P<0.01) increased the intracellular iron concentration, as well as labile ferrous iron and protein oxidation levels, compared with the effect of separate administration of each compound. Ang II treatment facilitated the protein expression of the Tf receptor, divalent metal transporter 1, and ferroportin 1 in a dose- and time-dependent manner. It was also found that simultaneous exposure of HGECs to Ang II and 90% Tf accelerated hydroxyl radical production, as shown by using an electron paramagnetic resonance spectrometer. These results suggest that Ang II not only induces production of ROS by NOX activation but also iron incorporation followed by an increase in labile iron in HGECs. Both of these events may participate in the progression of oxidative stress because of endothelial cell dysfunction through ferrous iron-mediated ROS generation.

  2. Effect of different kinds of crop residues on aggregate-protected soil organic matter fractions.

    NASA Astrophysics Data System (ADS)

    Huisz, A.

    2009-04-01

    Organic matter content of soils determines many important soil properties, such as soil structure, fertility and water-management. To improve its fertility and quality, returning different kinds of organic matter to soil has a long historical tradition. Ameliorating of soil and enhancing its fertility by enhancing its carbon stock with organic matter incorporation (like farmyard manure, crop residues or green manure) are general practices, but the extent of the amelioration depends much on several factors such as quantity, quality of the used organic matters. Quality of soil organic matters is affected by their chemical build-up, which differs by their origin (i.e. plant species); and their decomposability is affected by particle-size, protection by soil aggregates and the extent of their association to mineral surfaces. In our paper we investigated the effect of three different kinds of organic matter incorporation on aggregate-protected organic matter fractions: (1) Maize stem (M), (2) Wheat straw (W), and (3) Maize stem & Wheat straw (MW). Our samples were originated from Keszthely, Western Hungary, where the texture of the investigated soil is Sandy loam, the type of soil is Eutric Cambisol (soil type FAO), or Alfisol (soil type USDA). SOM fractions might be isolated and measured by physical fractionation of soil (Cambardella and Elliott (1992), Jensen et al. (1992)). Firstly, microaggregates were separated according to their particle-size with physical fractionation (i.e. wet sieving) (Six et al. (2000a)). Each sample was pre-treated by capillary wetting and was sieved for 2 min in an analytic sieve shaker machine with the following aperture sizes: 2 mm, 250 μm, 53 μm. Therefore 4 fractions were resulted: (1) the >2000 μm large macro-, (2) the 250-2000 μm small macro-, (3) the 53-250 μm microaggregates, and (4) the

  3. Chemical Glucosylation of Labile Natural Products Using a (2-Nitrophenyl)acetyl-Protected Glucosyl Acetimidate Donor.

    PubMed

    Weber, Julia; Schwarz, Markus; Schiefer, Andrea; Hametner, Christian; Häubl, Georg; Fröhlich, Johannes; Mikula, Hannes

    2018-06-07

    The synthesis of (2-nitrophenyl)acetyl (NPAc)-protected glucosyl donors is described that were designed for the neighboring-group assisted glucosylation of base-labile natural products also being sensitive to hydrogenolysis. Glycosylation conditions were optimized using a trichloroacetimidate glucosyl donor, and cyclohexylmethanol and (+)-menthol as model acceptors. The approach was then extended to a one-pot procedure for the synthesis of 1,2- trans -glycosides. This method was finally applied for improved synthesis of the masked mycotoxin T2- O -β,d-glucoside.

  4. Forms and lability of phosphorus in algae and aquatic macrophytes characterized by solution 31P NMR coupled with enzymatic hydrolysis

    USDA-ARS?s Scientific Manuscript database

    Increased information on forms and lability of phosphorus (P) in aquatic macrophytes and algae is crucial for better understanding of P biogeochemical cycling in eutrophic lakes. In this work, solution 31P nuclear magnetic resonance (NMR) spectroscopy coupled with enzymatic hydrolysis (EH) was used ...

  5. Impact of commercial garden growth substratum and NPK-fertilizer on copper fractionation in a copper-mine tailing

    NASA Astrophysics Data System (ADS)

    Charles, A.; Karam, A.; Jaouich, A.

    2009-04-01

    Organic amendment and NPK-fertilizer could affect the distribution of copper (Cu) among Cu-mine tailing compounds and hence the availability or phytotoxicity of Cu to plants. A laboratory incubation experiment was conducted to investigate the forms of Cu in a Cu-mine tailing (pH 7.70) amended with a commercial garden growth substratum (GGS) containing peat moss and natural mycorrhizae (Glomus intraradices) in combination with a commercial NPK-fertilizer (20-20-20), by a sequential extraction method. There were eight treatments after the combination of four rates of GGS (0, 12.4, 50 and 100 g/kg tailing) and two rates of fertilizer (0 and 20 g/kg tailing). At the end of a 52-week incubation period, tailing Cu was sequentially extracted to fractionate Cu into five operationally defined geochemical forms, namely ‘water-soluble' (Cu-sol), ‘exchangeable' (Cu-exc), ‘specifically adsorbed on carbonates or carbonate-bound' (Cu-car), ‘organic-bound' (Cu-org) and ‘residual' (Cu-res) fractions. After treatments, the most labile Cu pool (Cu-sol + Cu-exc) represented about 0.94 % of the total Cu, the Cu-car and Cu-org accounted for 22.7 and 5.0% of total Cu, and the residual Cu accounted for nearly 71.3% of total Cu. Compared with the control, the application of GGS decreased Cu-car and increased CuORG whereas the addition of fertilizer increased Cu-sol + Cu-exc and decreased Cu-carb. Fertilizer-treated tailings had the highest amount of Cu-sol + Cu-exc. High rates of GGS resulted in Cu-org levels in GGS-treated tailings which were more than 2.0-2.8 times those obtained in the untreated tailing (control). The partition of Cu in GGS-treated tailings followed the order: Cu-sol + Cu-exc < Cu-car < Cu-org < Cu-res. This study suggests that NPK-fertilizer promotes the formation of labile Cu forms in the calcite-containing Cu-mine tailing. GGS in the tailing matrix acts as effective sorbent for Cu.

  6. Acid-Labile Poly(glycidyl methacrylate)-Based Star Gene Vectors.

    PubMed

    Yang, Yan-Yu; Hu, Hao; Wang, Xing; Yang, Fei; Shen, Hong; Xu, Fu-Jian; Wu, De-Cheng

    2015-06-10

    It was recently reported that ethanolamine-functionalized poly(glycidyl methacrylate) (PGEA) possesses great potential applications in gene therapy due to its good biocompatibility and high transfection efficiency. Importing responsivity into PGEA vectors would further improve their performances. Herein, a series of responsive star-shaped vectors, acetaled β-cyclodextrin-PGEAs (A-CD-PGEAs) consisting of a β-CD core and five PGEA arms linked by acid-labile acetal groups, were proposed and characterized as therapeutic pDNA vectors. The A-CD-PGEAs owned abundant hydroxyl groups to shield extra positive charges of A-CD-PGEAs/pDNA complexes, and the star structure could decrease charge density. The incorporation of acetal linkers endowed A-CD-PGEAs with pH responsivity and degradation. In weakly acidic endosome, the broken acetal linkers resulted in decomposition of A-CD-PGEAs and morphological transformation of A-CD-PGEAs/pDNA complexes, lowering cytotoxicity and accelerating release of pDNA. In comparison with control CD-PGEAs without acetal linkers, A-CD-PGEAs exhibited significantly better transfection performances.

  7. Improving the relationship between soil characteristics and metal bioavailability by using reactive fractions of soil parameters in calcareous soils.

    PubMed

    de Santiago-Martín, Ana; van Oort, Folkert; González, Concepción; Quintana, José R; Lafuente, Antonio L; Lamy, Isabelle

    2015-01-01

    The contribution of the nature instead of the total content of soil parameters relevant to metal bioavailability in lettuce was tested using a series of low-polluted Mediterranean agricultural calcareous soils offering natural gradients in the content and composition of carbonate, organic, and oxide fractions. Two datasets were compared by canonical ordination based on redundancy analysis: total concentrations (TC dataset) of main soil parameters (constituents, phases, or elements) involved in metal retention and bioavailability; and chemically defined reactive fractions of these parameters (RF dataset). The metal bioavailability patterns were satisfactorily explained only when the RF dataset was used, and the results showed that the proportion of crystalline Fe oxides, dissolved organic C, diethylene-triamine-pentaacetic acid (DTPA)-extractable Cu and Zn, and a labile organic pool accounted for 76% of the variance. In addition, 2 multipollution scenarios by metal spiking were tested that showed better relationships with the RF dataset than with the TC dataset (up to 17% more) and new reactive fractions involved. For Mediterranean calcareous soils, the use of reactive pools of soil parameters rather than their total contents improved the relationships between soil constituents and metal bioavailability. Such pool determinations should be systematically included in studies dealing with bioavailability or risk assessment. © 2014 SETAC.

  8. Diverse Soil Carbon Dynamics Expressed at the Molecular Level

    NASA Astrophysics Data System (ADS)

    van der Voort, T. S.; Zell, C. I.; Hagedorn, F.; Feng, X.; McIntyre, C. P.; Haghipour, N.; Graf Pannatier, E.; Eglinton, T. I.

    2017-12-01

    The stability and potential vulnerability of soil organic matter (SOM) to global change remain incompletely understood due to the complex processes involved in its formation and turnover. Here we combine compound-specific radiocarbon analysis with fraction-specific and bulk-level radiocarbon measurements in order to further elucidate controls on SOM dynamics in a temperate and subalpine forested ecosystem. Radiocarbon contents of individual organic compounds isolated from the same soil interval generally exhibit greater variation than those among corresponding operationally defined fractions. Notably, markedly older ages of long-chain plant leaf wax lipids (n-alkanoic acids) imply that they reflect a highly stable carbon pool. Furthermore, marked 14C variations among shorter- and longer-chain n-alkanoic acid homologues suggest that they track different SOM pools. Extremes in SOM dynamics thus manifest themselves within a single compound class. This exploratory study highlights the potential of compound-specific radiocarbon analysis for understanding SOM dynamics in ecosystems potentially vulnerable to global change.

  9. Soil organic matter stability in agricultural land: New insights using δ15N, δ13C and C:N ratio

    NASA Astrophysics Data System (ADS)

    Mao, Yanling; Heiling, Maria; De Clercq, Tim; Resch, Christian; Aigner, Martina; Mayr, Leo; Vanlauwe, Bernard; Thuita, Moses; Steier, Peter; Leifeld, Jens; Merckx, Roel; Spiegel, Heide; Cepuder, Peter; Nguyen, Minh-Long; Zaman, Mohammad; Dercon, Gerd

    2014-05-01

    Soil organic matter (SOM) contains three times more carbon than in the atmosphere or terrestrial vegetation. This major pool of organic carbon is sensitive to climate change, but the mechanisms for carbon stabilization in soils are still not well understood and the ultimate potential for carbon stabilization is unknown. For predicting SOM dynamics, it is necessary to gain information on the turnover rates or stability of different soil organic carbon pools. The common method to determine stability and age of SOM is the 14C radio carbon technique, which is very expensive and therefore limited in use. Conen et al. (2008) developed a model to estimate the SOM stability based on the isotopic discrimination of 15N natural abundance by soil micro-organisms, and the decreasing C:N ratio during organic matter decomposition. This model has been developed for permanent grasslands in the Swiss Alps under steady-state conditions. The objective of our study was to validate whether this model could be used or adapted, in combination with 13C isotope signatures of SOM, to predict the relative age and stability of SOM fractions in more disturbed agricultural ecosystems. The present study was carried out on soils collected from six long-term experimental trials (from 12 to 50 years) under different agricultural management practices (e.g. no tillage vs conventional tillage, and mulch, fertilizer, green or animal manure application), located in Austria, Belgium, Kenya and China. Top and subsoil were sampled until 80-100 cm depth. Particulate organic matter (POM) fraction was obtained by wet sieving (> 63μm) after sonification and density separation (<1.8 g cm-3). Carbon and nitrogen contents and their stable isotopic ratios (i.e. 15N and 13C) were measured in POM and bulk soils. The mineral associated matter fraction (mOM), as the protected carbon, was calculated by difference to the bulk soil organic carbon. The relative age of the SOM was calculated using the Conen model and

  10. The DIRT on Q10: In situ depletion of labile-inputs does not increase temperature sensitivity in a laboratory incubation (Invited)

    NASA Astrophysics Data System (ADS)

    Reynolds, L. L.; Lajtha, K.; Bowden, R.; Johnson, B. R.; Bridgham, S. D.

    2013-12-01

    The decomposition of soil organic matter is expected to increase with global warming and has been commonly described by kinetic models with at least two pools with differing turnover times. Pools characterized by rapid turnover are thought to consist of labile substrates. Meanwhile, slower turnover is attributed, in part, to greater chemical complexity and a necessarily higher activation energy which should in turn lead to a higher sensitivity (Q10) to temperature and a proportionally larger response to warming. Experimental tests of the relative Q10 of these pools have been inconclusive and contradictory in part due the fact that all pools are decomposing simultaneously and soils kept under differing conditions over long periods of time diverge in more than the Q10 response making them less comparable over time. We present here a test of the temperature response on soils from a 20 yr litter manipulation experiment incubated under an experimental regime that minimizes divergence among the soils. We hypothesize that 1) if exclusion of inputs has depleted labile substrates and 2) the remaining carbon is more chemically complex, then the input exclusion treatments should show a higher Q10 compared to the ambient or increased input treatments. The soils are taken from the Detritus Input and Removal Treatment (DIRT) plots in the Bousson Forest, Pennsylvania, US. The DIRT treatments consist of litter and root exclusion (no inputs = NI), no roots (NR), no litter (NL), double litter (DL), and ambient conditions (C). Soils were incubated at 25oC for 525 days. Periodically, replicate sets were rotated into 15oC, 35oC or remained at 25oC for 24 hr. The headspace CO2 concentration was measured before and after the 24 hr temperature treatments, and then all replicate sets were returned to 25oC. Twenty years of input exclusion decreased respiration rate, with NI < NR = NL < C = DL, and total carbon content, and thus, we conclude, labile substrates. The respiration rate at 25o

  11. Application of growing hierarchical SOM for visualisation of network forensics traffic data.

    PubMed

    Palomo, E J; North, J; Elizondo, D; Luque, R M; Watson, T

    2012-08-01

    Digital investigation methods are becoming more and more important due to the proliferation of digital crimes and crimes involving digital evidence. Network forensics is a research area that gathers evidence by collecting and analysing network traffic data logs. This analysis can be a difficult process, especially because of the high variability of these attacks and large amount of data. Therefore, software tools that can help with these digital investigations are in great demand. In this paper, a novel approach to analysing and visualising network traffic data based on growing hierarchical self-organising maps (GHSOM) is presented. The self-organising map (SOM) has been shown to be successful for the analysis of highly-dimensional input data in data mining applications as well as for data visualisation in a more intuitive and understandable manner. However, the SOM has some problems related to its static topology and its inability to represent hierarchical relationships in the input data. The GHSOM tries to overcome these limitations by generating a hierarchical architecture that is automatically determined according to the input data and reflects the inherent hierarchical relationships among them. Moreover, the proposed GHSOM has been modified to correctly treat the qualitative features that are present in the traffic data in addition to the quantitative features. Experimental results show that this approach can be very useful for a better understanding of network traffic data, making it easier to search for evidence of attacks or anomalous behaviour in a network environment. Copyright © 2012 Elsevier Ltd. All rights reserved.

  12. Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry.

    PubMed

    Mann, Benjamin F; Chen, Hongmei; Herndon, Elizabeth M; Chu, Rosalie K; Tolic, Nikola; Portier, Evan F; Roy Chowdhury, Taniya; Robinson, Errol W; Callister, Stephen J; Wullschleger, Stan D; Graham, David E; Liang, Liyuan; Gu, Baohua

    2015-01-01

    Microbial degradation of soil organic matter (SOM) is a key process for terrestrial carbon cycling, although the molecular details of these transformations remain unclear. This study reports the application of ultrahigh resolution mass spectrometry to profile the molecular composition of SOM and its degradation during a simulated warming experiment. A soil sample, collected near Barrow, Alaska, USA, was subjected to a 40-day incubation under anoxic conditions and analyzed before and after the incubation to determine changes of SOM composition. A CHO index based on molecular C, H, and O data was utilized to codify SOM components according to their observed degradation potentials. Compounds with a CHO index score between -1 and 0 in a water-soluble fraction (WSF) demonstrated high degradation potential, with a highest shift of CHO index occurred in the N-containing group of compounds, while similar stoichiometries in a base-soluble fraction (BSF) did not. Additionally, compared with the classical H:C vs O:C van Krevelen diagram, CHO index allowed for direct visualization of the distribution of heteroatoms such as N in the identified SOM compounds. We demonstrate that CHO index is useful not only in characterizing arctic SOM at the molecular level but also enabling quantitative description of SOM degradation, thereby facilitating incorporation of the high resolution MS datasets to future mechanistic models of SOM degradation and prediction of greenhouse gas emissions.

  13. Effects of composition of labile organic matter on biogenic production of methane in the coastal sediments of the Arabian Sea.

    PubMed

    Gonsalves, Maria-Judith; Fernandes, Christabelle E G; Fernandes, Sheryl Oliveira; Kirchman, David L; Bharathi, P A Loka

    2011-11-01

    Coastal regions are potential zones for production of methane which could be governed by ecological/environmental differences or even sediment properties of a niche. In order to test the hypothesis that methanogenesis in most marine sediments could be driven more by proteins than by carbohydrates and lipid content of labile organic matter (LOM), incubation experiments were carried out with sediments from different environmental niches to measure methane production. The methane production rates were examined in relationship to the sediment biochemistry, i.e., carbohydrates, proteins, and lipids. The gas production measured by head space method ranged from 216 ng g( -1) day( -1) in the mangrove sediments to 3.1 μg g( -1) day( -1) in the shallow Arabian Sea. LOM ranged from 1.56 to 2.85 mg g( -1) in the shallow Arabian Sea, from 3.35 to 5.43 mg g( -1) in the mangrove estuary, and from 0.66 to 0.70 mg g( -1) in the sandy sediments with proteins contributing maximum to the LOM pool. Proteins influenced methane production in the clayey sediments of shallow depths of the Arabian Sea (r = 0.933, p < 0.001) and mangrove estuary (r = 0.981, p < 0.001) but in the sandy beach sediments, carbohydrates (r = 0.924, p < 0.001) governed the net methane production. The gas production was more pronounced in shallow and surface sediments and it decreased with depth apparently governed by the decrease in lability index. Thus, the lability index and protein content are important factors that determine methane production rates in these coastal ecosystems.

  14. Clustering self-organizing maps (SOM) method for human papillomavirus (HPV) DNA as the main cause of cervical cancer disease

    NASA Astrophysics Data System (ADS)

    Bustamam, A.; Aldila, D.; Fatimah, Arimbi, M. D.

    2017-07-01

    One of the most widely used clustering method, since it has advantage on its robustness, is Self-Organizing Maps (SOM) method. This paper discusses the application of SOM method on Human Papillomavirus (HPV) DNA which is the main cause of cervical cancer disease, the most dangerous cancer in developing countries. We use 18 types of HPV DNA-based on the newest complete genome. By using open-source-based program R, clustering process can separate 18 types of HPV into two different clusters. There are two types of HPV in the first cluster while 16 others in the second cluster. The analyzing result of 18 types HPV based on the malignancy of the virus (the difficultness to cure). Two of HPV types the first cluster can be classified as tame HPV, while 16 others in the second cluster are classified as vicious HPV.

  15. Changes in SOC stocks and fractions after natural afforestation of alpine grasslands

    NASA Astrophysics Data System (ADS)

    Guidi, Claudia; Rodeghiero, Mirco; Vesterdal, Lars; Gianelle, Damiano

    2013-04-01

    registered in forest sites which can lead to a concentration of C inputs in a smaller volume of soil. If C stocks are computed using an equivalent soil depth approach, mineral SOC stocks are lower in forest land uses compared to grassland while no significant difference emerges if an equivalent soil mass approach is used. The aggregate size fractionation highlighted an increase in C stored in large macroaggregates following afforestation and a decrease in silt and clay size fraction (<53 μm). The strongest change shown through the size-density fractionation procedure is a three-fold increase in C stored in free organic matter (POM) from grassland to forest. Intriguingly, we found a decreasing trend in the microaggregate (53-250 μm) fraction as well as for the mineral-associated heavy fraction following afforestation, suggesting a decrease in the more stable SOC fraction, while the labile fractions increased.

  16. An electromyographic analysis of shoulder muscle activation during push-up variations on stable and labile surfaces.

    PubMed

    Sandhu, Jaspal S; Mahajan, Shruti; Shenoy, Shweta

    2008-04-01

    Numerous exercises are used to strengthen muscles around the shoulder joint including the push-up and the push-up plus. An important consideration is the addition of surface instability in the form of swiss ball for rehabilitation and strength. The justification for the use of the swiss ball is based on its potential for increasing muscular demand required to maintain postural stability and for improving joint proprioception. Evidence for this is lacking in literature. To compare the myoelectric amplitude of shoulder muscles during push-ups on labile and stable surface. Same subject experimental study. Thirty healthy male subjects in the age group 20-30 years with a mean height of 173.65 cm (+/- SD 2.56) and a mean weight of 69.9 kg (+/-SD 0.2) were taken. Surface electromyogram was recorded from triceps, pectoralis major, serratus anterior and upper trapezius while performing push-up and push-up plus exercises, both on labile and stable surface. Significant increase in muscle activity was observed in pectoralis major and triceps muscle (only during eccentric phase of elbow pushups), while serratus anterior and upper trapezius showed no change in activation level on swiss ball. The addition of a swiss ball is capable of influencing shoulder muscle activity during push-up variations, although the effect is task and muscle dependent.

  17. Micellar electrokinetic chromatography with acid labile surfactant.

    PubMed

    Stanley, Bob; Lucy, Charles A

    2012-02-24

    We present a study of a degradable surfactant, sodium 4-[(2-methyl-2-undecyl-1,3-dioxolan-4-yl)methoxy]-1-propane sulfonate that is also known as an acid-labile surfactant (ALS). The performance of ALS as a pseudostationary phase is assessed and compared with established pseudostationary phases such as sodium dodecyl sulphate (SDS), volatile surfactants and polymeric micelles. ALS achieves separation efficiency of 100,000-145,000 theoretical plates and relative standard deviation (RSD) of electrophoretic mobility (n=5) of less than 3%. Retention factors with ALS are strongly correlated with those with SDS. This is shown by the R2=0.79 for all eleven analytes and an R2=0.992 for specifically the non-hydrogen bonding (NHB) analytes. However, ALS displays different selectivity than SDS for hydrogen bond donor (HBD) and hydrogen bond acceptor (HBA) solutes (R2 of 0.74 and 0.88, respectively). ALS is degraded to less surface active compounds in acidic solution. These less surface-active compounds are more compatible with the electrospray ionization mass spectrometry (ESI-MS). ALS has a half-life of 48 min at pH 4. ALS has the potential to couple micellar electrokinetic chromatography (MEKC) with the ESI-MS. ALS can be used as a pseudostationary phase for a high efficiency separation and later acid hydrolyzed to enable an ESI-MS analysis. Copyright © 2011 Elsevier B.V. All rights reserved.

  18. A simple approach to estimate daily loads of total, refractory, and labile organic carbon from their seasonal loads in a watershed

    Treesearch

    Ying Ouyang; Johnny M. Grace; Wayne C. Zipperer; Jeff Hatten; Janet Dewey

    2018-01-01

    Loads of naturally occurring total organic carbons (TOC), refractory organic carbon (ROC), and labile organic carbon (LOC) instreams control the availability of nutrients and the solubility and toxicity of contaminants and affect biological activities throughabsorption of light and complex metals with production of carcinogenic compounds....

  19. Implications of effluent organic matter and its hydrophilic fraction on zinc(II) complexation in rivers under strong urban pressure: aromaticity as an inaccurate indicator of DOM-metal binding.

    PubMed

    Louis, Yoann; Pernet-Coudrier, Benoît; Varrault, Gilles

    2014-08-15

    The zinc binding characteristics of dissolved organic matter (DOM) fractions from the Seine River Basin were studied after being separated and extracted according to their polarity: hydrophobic, transphilic, and hydrophilic. The applied experimental methodology was based on a determination of labile zinc species by means of differential pulse anodic stripping voltammetry (DPASV) at increasing concentrations of total zinc on a logarithmic scale and at fixed levels of: pH, ionic strength, and temperature. Fitting the DOM fractions with two discrete classes of ligands successfully allowed determining the conditional zinc binding constants (Ki) as well as total ligand density (LiT). The binding constants obtained for each DOM fraction were then compared and discussed with respect to the hydrophobic/hydrophilic nature and sample origin. Results highlighted a strong complexation of zinc to the effluent organic matter and especially the most hydrophilic fraction, which also displayed a very low specific UV absorbance. Although the biotic ligand model takes into account the quality of DOM through UV absorbance in the predictions of metal bioavailability and toxicity, this correction is not efficient for urban waters. Copyright © 2014 Elsevier B.V. All rights reserved.

  20. Thermal and high pressure inactivation kinetics of blueberry peroxidase.

    PubMed

    Terefe, Netsanet Shiferaw; Delon, Antoine; Versteeg, Cornelis

    2017-10-01

    This study for the first time investigated the stability and inactivation kinetics of blueberry peroxidase in model systems (McIlvaine buffer, pH=3.6, the typical pH of blueberry juice) during thermal (40-80°C) and combined high pressure-thermal processing (0.1-690MPa, 30-90°C). At 70-80°C, the thermal inactivation kinetics was best described by a biphasic model with ∼61% labile and ∼39% stable fractions at temperature between 70 and 75°C. High pressure inhibited the inactivation of the enzyme with no inactivation at pressures as high as 690MPa and temperatures less than 50°C. The inactivation kinetics of the enzyme at 60-70°C, and pressures higher than 500MPa was best described by a first order biphasic model with ∼25% labile fraction and 75% stable fraction. The activation energy values at atmospheric pressure were 548.6kJ/mol and 324.5kJ/mol respectively for the stable and the labile fractions. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

  1. Organomineral Interactions and Herbicide Sorption in Brazilian Tropical and Subtropical Oxisols under No-Tillage.

    PubMed

    Bonfleur, Eloana J; Kookana, Rai S; Tornisielo, Valdemar L; Regitano, Jussara B

    2016-05-25

    We evaluated the effects of the soil organic matter (SOM) composition, distribution between soil aggregates size, and their interactions with the mineral phase on herbicide sorption (alachlor, bentazon, and imazethapyr) in tropical and subtropical Oxisols under no-till systems (NT). Using soil physical fractionation approach, sorption experiments were performed on whole soils and their aggregates. SOM chemistry was assessed by CP/MAS (13)C NMR. The lower sorption observed in tropical soils was attributed to the greater blockage of SOM sorption sites than in subtropical soils. When these sites were exposed upon physical fractionation, sorption of the three herbicides in tropical soils increased, especially for imazethapyr. High amounts of poorly crystallized sesquioxides in these soils may have contributed to masking of sorption sites, indicating that organomineral interactions may lead to blockage of sorption sites on SOM in tropical soils.

  2. A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury

    DTIC Science & Technology

    2013-10-01

    acutely manic bipolar patients, and the FDA approved it in 1995 for this indication. Also, it is used in conjunction with lithium or carbamazepine to...0652 TITLE: A Double Blind Trial of Divalproex Sodium for Affective Lability and Alcohol Use Following Traumatic Brain Injury...and Alcohol Use Following Traumatic Brain Injury 5a. CONTRACT NUMBER 5b. GRANT NUMBER W81XWH-08-2-0652 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR

  3. Solid-state 13C NMR experiments reveal effects of aggregate size on the chemical composition of particulate organic matter in grazed steppe soils

    NASA Astrophysics Data System (ADS)

    Steffens, M.; Kölbl, A.; Kögel-Knabner, I.

    2009-04-01

    Grazing is one of the most important factors that may reduce soil organic matter (SOM) stocks and subsequently deteriorate aggregate stability in grassland topsoils. Land use management and grazing reduction are assumed to increase the input of OM, improve the soil aggregation and change species composition of vegetation (changes depth of OM input). Many studies have evaluated the impact of grazing cessation on SOM quantity. But until today little is known about the impact of grazing cessation on the chemical quality of SOM in density fractions, aggregate size classes and different horizons. The central aim of this study was to analyse the quality of SOM fractions in differently sized aggregates and horizons as affected by increased inputs of organic matter due to grazing exclusion. We applied a combined aggregate size, density and particle size fractionation procedure to sandy steppe topsoils with different organic matter inputs due to different grazing intensities (continuously grazed = Cg, winter grazing = Wg, ungrazed since 1999 = Ug99, ungrazed since 1979 = Ug79). Three different particulate organic matter (POM; free POM, in aggregate occluded POM and small in aggregate occluded POM) and seven mineral-associated organic matter fractions were separated for each of three aggregate size classes (coarse = 2000-6300 m, medium = 630-2000 m and fine =

  4. The effect of flood events on the partitioning of labile and refractory carbon in the Missouri-Mississippi River system

    NASA Astrophysics Data System (ADS)

    Roe, K. M.; Rosenheim, B. E.; Kolker, A.; Allison, M. A.; Nittrouer, J. A.; Duncan, D. D.; Nyman, J. A.; Butcher, K. A.; Adamic, J. F.

    2009-12-01

    The Missouri-Mississippi River system (MMRS) transports over 40% (4.0 x 109 kg) of the United States's annual input of total organic carbon (OC) from land to the marine environment, yet it is challenging to assess the MMRS’s exact role in the global carbon cycle because of the system’s complexity and temporal variability (i.e. high discharge events and low flow regimes). Determining the relative proportion of labile OC to refractory OC entrained in the MMRS during high and mean flow conditions would lend to the understanding of the MMRS’s role in the flux of carbon between the biospheric and atmospheric reservoirs, which is central to determining the role of anthropogenic CO2 in the global carbon cycle and in climate change. In this study, we investigate the relative proportion of labile OC to refractory OC in the lower MMRS during high and near-mean flow conditions in the springs of 2008 and 2009, respectively. The 2008 spring flood discharged 105 km3 of water, the maximum amount of water ever allowed out of the main channel, at a maximum rate of 4.3 x 104 m3s-1. Events of this scale have occurred only nine times in the past 80 years. Additionally, during the spring 2008 flood, bedload sand and large particulate OC transport rates were observed to increase exponentially. The following spring, high discharge rates returned to near-mean values with a peak discharge of 3.6 x 103 m3s-1. Using radiocarbon age and the thermal stability of organic matter (OM) as a proxy for lability, we evaluate the spectra of ages of particulate OM transported in the lower MMRS during these two flow regimes using a programmed-temperature pyrolysis/combustion system (PTP/CS) coupled with 14C determination. The PTP/CS utilizes the differences in thermal stability of acid insoluble particulate organic matter (AIPOM) to separate different components from the bulk. Employing PTP/CS on bulk AIPOM can complement experiments measuring small proportions of total OM such as compound

  5. Diffusive Milli-Gels (DMG) for in situ assessment of metal bioavailability: A comparison with labile metal measurement using Chelex columns and acute toxicity to Ceriodaphnia dubia for copper in freshwaters.

    PubMed

    Perez, Magali; Simpson, Stuart L; Lespes, Gaëtane; King, Josh J; Adams, Merrin S; Jarolimek, Chad V; Grassl, Bruno; Schaumlöffel, Dirk

    2016-12-01

    Fluctuations in concentrations of bioavailable metals occur in most natural waters. In situ measurements are desirable to predict risks of adverse effects to aquatic organisms. We evaluated Diffusive Milli-Gels (DMG), a new in situ passive sampler, for assessing the bioavailability and toxicity of copper in waters exhibiting a wide range of characteristics. The performance was compared to an established Chelex-column method that measures labile copper concentrations by discrete sampling, and the ability to predict acute toxicity to the cladoceran, Ceriodaphnia dubia. The labile copper concentrations measured by the DMG and Chelex-column methods decreased with increasing dissolved organic carbon (DOC) (1.9-15 mg L -1 ) and hardness (21-270 mg CaCO 3  L -1 hardness), with 20-70% of total dissolved copper being present as labile copper. Toxicity decreased with increasing DOC and hardness. Strong linear relationships existed between the EC50 for C. dubia and DOC, and when the EC50 was related to either the labile copper concentrations measured by DMG (r 2  = 0.874) or the Chelex column (0.956) methods. The study demonstrates that the DMG passive sampler is a relevant tool for the in situ assessment of environmental risks posed by metals whose toxicity is strongly influenced by speciation. Copyright © 2016 Elsevier Ltd. All rights reserved.

  6. The impact of wine components on fractionation of Cu and Fe in model wine systems: Macromolecules, phenolic and sulfur compounds.

    PubMed

    Kontoudakis, Nikolaos; Smith, Mark; Guo, Anque; Smith, Paul A; Scollary, Geoffrey R; Wilkes, Eric N; Clark, Andrew C

    2017-08-01

    A variety of techniques have been developed with the ability to measure different forms of metals in wine with the ultimate aim of providing a more accurate indicator of metal induced spoilage of wine. This study was conducted in order to identify which wine components influence the measurement of Cu and Fe in their fractionated and/or electrochemically active forms. The measurement techniques involved detection of labile Cu by stripping potentiometry and fractionation of Cu and Fe by sequential solid phase extraction, with detection by inductively coupled plasma-optical emission spectroscopy. The wine components assessed included those extracted from wine (red wine tannin, white wine protein, white wine polysaccharide, red wine polyphenol, white wine polyphenol), and commercially available monomeric compounds, including phenolic compounds and sulfur-containing compounds. For Cu, only hydrogen sulfide, which is known to induce the formation of Cu(I) sulfide, showed any appreciable influence on the fractionation and electrochemical detection of Cu. This form of Cu was also identified as the major component of red and white wines. For Fe, the fractionation was different for red versus white wine, and influenced significantly by extracted red wine polyphenol, (-)-epicatechin, gallic acid and tartaric acid. The wine components showed more influence on Fe at pH4.00 compared to pH3.25. These results enable a targeted use of these techniques in the assessment of metal-induced spoilage of wine. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Disruption of Human Plasma High Density Lipoproteins by Streptococcal Serum Opacity Factor Requires Labile Apolipoprotein A-I

    PubMed Central

    Han, Mikyung; Gillard, Baiba K.; Courtney, Harry S.; Ward, Kathryn; Rosales, Corina; Khant, Htet; Ludtke, Steven J.; Pownall, Henry J.

    2010-01-01

    Human plasma high density lipoproteins (HDL), the primary vehicle for reverse cholesterol transport, are the target of serum opacity factor (SOF), a virulence determinant of Streptococcus pyogenes that turns serum opaque. HDL comprise a core of neutral lipids–cholesteryl esters and some triglyceride–surrounded by a surface monolayer of cholesterol, phospholipids, and specialized proteins–apolipoproteins (apos) A-I and A-II. HDL is an unstable particle residing in a kinetic trap from which it can escape via chaotropic, detergent or thermal perturbation. Recombinant (r) SOF catalyzes the transfer of nearly all neutral lipids of ~100,000 HDL particles (D ~ 8.5 nm) into a single, large cholesteryl ester-rich microemulsion (CERM; D >100 nm) leaving a new HDL-like particle–neo HDL (D ~5.8 nm) while releasing lipid-free (LF) apo A-I. CERM formation and apo A-I release have similar kinetics suggesting parallel or rapid consecutive steps. By using complementary physico-chemical methods, we have refined the mechanistic model for HDL opacification. According to size exclusion chromatography, HDL containing non-labile apo A-I resists rSOF-mediated opacification. Based on kinetic cryo electron microscopy, rSOF (10 nM) catalyzes the conversion of HDL (4 μM) to neo HDL via a step-wise mechanism in which intermediate-size particles are seen. Kinetic turbidimetry revealed opacification as a rising exponential reaction with a rate constant k = (4.400 ± 0.004) × 10−2 min−1. Analysis of the kinetic data using transition state theory gave an enthalpy, entropy and free energy of activation of ΔH‡ = 73.9 kJ/mol, ΔS‡ = −66.87 J/°K, and ΔG‡ = 94.6 kJ/mol respectively. The free energy of activation for opacification is nearly identical to that for the displacement of apo A-I from HDL by guanidine hydrochloride. We conclude that apo A-I lability is required for HDL opacification, LF apo A-I desorption is the rate-limiting step, and nearly all HDL particles contain

  8. Speciation of strontium in particulates and sediments from the Mississippi River mixing zone

    NASA Astrophysics Data System (ADS)

    Xu, Yingfeng; Marcantonio, Franco

    2004-06-01

    Sequential extractions were performed on small amounts of particulate and sediment samples (6 to10 mg) from the Mississippi River mixing zone. The leachates were analyzed for Sr concentration and 87Sr/ 86Sr isotope ratio. Mn and Fe contents were also measured as their oxyhydroxides are potential carrier phases for Sr. The largest fraction of Sr in the solid phase (particulates and sediments) was found to be present in the residual, refractory fraction (>70% of total). By comparison with the corresponding sediment, particulates appear to have higher concentrations of nonresidual, labile Sr (30% vs. 15%). Carbonate components seem to play an important role as carriers for labile Sr in particulates and sediments. Changes in the composition and content of the solid phase may significantly modify both the 87Sr/ 86Sr isotope ratio of the total labile fractions and that of the bulk components. However, such modifications, under normal conditions, exert little measurable influence on the Sr isotope composition of the dissolved phase.

  9. Modeling soil organic matter (SOM) from satellite data using VISNIR-SWIR spectroscopy and PLS regression with step-down variable selection algorithm: case study of Campos Amazonicos National Park savanna enclave, Brazil

    NASA Astrophysics Data System (ADS)

    Rosero-Vlasova, O.; Borini Alves, D.; Vlassova, L.; Perez-Cabello, F.; Montorio Lloveria, R.

    2017-10-01

    Deforestation in Amazon basin due, among other factors, to frequent wildfires demands continuous post-fire monitoring of soil and vegetation. Thus, the study posed two objectives: (1) evaluate the capacity of Visible - Near InfraRed - ShortWave InfraRed (VIS-NIR-SWIR) spectroscopy to estimate soil organic matter (SOM) in fire-affected soils, and (2) assess the feasibility of SOM mapping from satellite images. For this purpose, 30 soil samples (surface layer) were collected in 2016 in areas of grass and riparian vegetation of Campos Amazonicos National Park, Brazil, repeatedly affected by wildfires. Standard laboratory procedures were applied to determine SOM. Reflectance spectra of soils were obtained in controlled laboratory conditions using Fieldspec4 spectroradiometer (spectral range 350nm- 2500nm). Measured spectra were resampled to simulate reflectances for Landsat-8, Sentinel-2 and EnMap spectral bands, used as predictors in SOM models developed using Partial Least Squares regression and step-down variable selection algorithm (PLSR-SD). The best fit was achieved with models based on reflectances simulated for EnMap bands (R2=0.93; R2cv=0.82 and NMSE=0.07; NMSEcv=0.19). The model uses only 8 out of 244 predictors (bands) chosen by the step-down variable selection algorithm. The least reliable estimates (R2=0.55 and R2cv=0.40 and NMSE=0.43; NMSEcv=0.60) resulted from Landsat model, while Sentinel-2 model showed R2=0.68 and R2cv=0.63; NMSE=0.31 and NMSEcv=0.38. The results confirm high potential of VIS-NIR-SWIR spectroscopy for SOM estimation. Application of step-down produces sparser and better-fit models. Finally, SOM can be estimated with an acceptable accuracy (NMSE 0.35) from EnMap and Sentinel-2 data enabling mapping and analysis of impacts of repeated wildfires on soils in the study area.

  10. Optimized demineralization technique for the measurement of stable isotope ratios of nonexchangeable H in soil organic matter.

    PubMed

    Ruppenthal, Marc; Oelmann, Yvonne; Wilcke, Wolfgang

    2013-01-15

    To make use of the isotope ratio of nonexchangeable hydrogen (δ(2)H(n (nonexchangeable))) of bulk soil organic matter (SOM), the mineral matrix (containing structural water of clay minerals) must be separated from SOM and samples need to be analyzed after H isotope equilibration. We present a novel technique for demineralization of soil samples with HF and dilute HCl and recovery of the SOM fraction solubilized in the HF demineralization solution via solid-phase extraction. Compared with existing techniques, organic C (C(org)) and organic N (N(org)) recovery of demineralized SOM concentrates was significantly increased (C(org) recovery using existing techniques vs new demineralization method: 58% vs 78%; N(org) recovery: 60% vs 78%). Chemicals used for the demineralization treatment did not affect δ(2)H(n) values as revealed by spiking with deuterated water. The new demineralization method minimized organic matter losses and thus artificial H isotope fractionation, opening up the opportunity to use δ(2)H(n) analyses of SOM as a new tool in paleoclimatology or geospatial forensics.

  11. Carbon, Nitrogen, and Phosphorus Increase in Soil Physical Fractions Following Vegetation Change from Grassland to Woodland

    NASA Astrophysics Data System (ADS)

    Kantola, I. B.; Boutton, T. W.; Filley, T. R.; Hallmark, C. T.

    2009-12-01

    Woody plant encroachment has been pervasive in grass-dominated ecosystems around the world during the past century due to livestock grazing, fire suppression, and/or changes in climate and atmospheric chemistry. In the Rio Grande Plains of Texas, subtropical thorn woodlands dominated by N-fixing tree legumes have largely replaced grasslands. This dramatic land cover change has increased above- and belowground primary productivity and accelerated rates of biogeochemical processes in the soil. The purpose of this study was to assess the impact of this grassland to woodland transition on C, N, and P concentrations in soil physical fractions that differ in turnover rates. Soil samples (0-10 cm) were collected in remnant grasslands and near the centers of woody plant clusters ranging in age from 15 to 90 yrs in a subtropical savanna parkland in southern Texas. Soils were fractionated by wet sieving into five size and density classes: un-sieved whole soil, free light fraction (density <1 g/cm3), macroaggregates (>250 µm), microaggregates (53-250 µm), and free silt and clay (<53 µm). C and N concentrations in each of the fractions were determined by elemental analysis, and total P concentrations were determined by alkaline oxidation and sulfuric acid digestion coupled with ascorbic acid colorimetry. C, N, and P concentrations in whole soil were 2-3X greater in woody clusters than in grasslands. In addition, C, N, and P concentrations all increased linearly with time following woody plant invasion in all fractions except free silt and clay. Most of the newly accrued C, N, and P was in the relatively more labile light fractions and macroaggregates. C:P and N:P ratios increased following woody encroachment, indicating carbon and nitrogen accumulated at a faster rate than phosphorus. Since N and P are generally the most limiting nutrients in terrestrial ecosystems, increased stores of these elements are likely to alter rates of microbial processes, plant-microbe and plant

  12. Indexing Permafrost Soil Organic Matter Degradation Using High-Resolution Mass Spectrometry

    DOE PAGES

    Mann, Benjamin F.; Chen, Hongmei; Herndon, Elizabeth M.; ...

    2015-06-12

    Microbial degradation of soil organic matter (SOM) is a key process for terrestrial carbon cycling, although the molecular details of these transformations remain unclear. This study reports the application of ultrahigh resolution mass spectrometry to profile the molecular composition of SOM and its degradation during a simulated warming experiment. A soil sample, collected near Barrow, Alaska, USA, was subjected to a 40-day incubation under anoxic conditions and analyzed before and after the incubation to determine changes of SOM composition. A CHO index based on molecular C, H, and O data was utilized to codify SOM components according to their observedmore » degradation potentials. Compounds with a CHO index score between –1 and 0 in a water-soluble fraction (WSF) demonstrated high degradation potential, with a highest shift of CHO index occurred in the N-containing group of compounds, while similar stoichiometries in a base-soluble fraction (BSF) did not. Additionally, compared with the classical H:C vs O:C van Krevelen diagram, CHO index allowed for direct visualization of the distribution of heteroatoms such as N in the identified SOM compounds. We demonstrate that CHO index is useful not only in characterizing arctic SOM at the molecular level but also enabling quantitative description of SOM degradation, thereby facilitating incorporation of the high resolution MS datasets to future mechanistic models of SOM degradation and prediction of greenhouse gas emissions.« less

  13. Microscale soil structure development after glacial retreat - using machine-learning based segmentation of elemental distributions obtained by NanoSIMS

    NASA Astrophysics Data System (ADS)

    Schweizer, Steffen; Schlueter, Steffen; Hoeschen, Carmen; Koegel-Knabner, Ingrid; Mueller, Carsten W.

    2017-04-01

    Soil organic matter (SOM) is distributed on mineral surfaces depending on physicochemical soil properties that vary at the submicron scale. Nanoscale secondary ion mass spectrometry (NanoSIMS) can be used to visualize the spatial distribution of up to seven elements simultaneously at a lateral resolution of approximately 100 nm from which patterns of SOM coatings can be derived. Existing computational methods are mostly confined to visualization and lack spatial quantification measures of coverage and connectivity of organic matter coatings. This study proposes a methodology for the spatial analysis of SOM coatings based on supervised pixel classification and automatic image analysis of the 12C, 12C14N (indicative for SOM) and 16O (indicative for mineral surfaces) secondary ion distributions. The image segmentation of the secondary ion distributions into mineral particle surface and organic coating was done with a machine learning algorithm, which accounts for multiple features like size, color, intensity, edge and texture in all three ion distributions simultaneously. Our workflow allowed the spatial analysis of differences in the SOM coverage during soil development in the Damma glacier forefield (Switzerland) based on NanoSIMS measurements (n=121; containing ca. 4000 particles). The Damma chronosequence comprises several stages of soil development with increasing ice-free period (from ca. 15 to >700 years). To investigate mineral-associated SOM in the developing soil we obtained clay fractions (<2 μm) from two density fractions: light mineral (1.6 to 2.2 g cm3) and heavy mineral (>2.2 g cm3). We found increased coverage and a simultaneous development from patchy-distributed organic coatings to more connected coatings with increasing time after glacial retreat. The normalized N:C ratio (12C14N: (12C14N + 12C)) on the organic matter coatings was higher in the medium-aged soils than in the young and mature ones in both heavy and light mineral fraction. This

  14. Fatigue Level Estimation of Bill Based on Acoustic Signal Feature by Supervised SOM

    NASA Astrophysics Data System (ADS)

    Teranishi, Masaru; Omatu, Sigeru; Kosaka, Toshihisa

    Fatigued bills have harmful influence on daily operation of Automated Teller Machine(ATM). To make the fatigued bills classification more efficient, development of an automatic fatigued bill classification method is desired. We propose a new method to estimate bending rigidity of bill from acoustic signal feature of banking machines. The estimated bending rigidities are used as continuous fatigue level for classification of fatigued bill. By using the supervised Self-Organizing Map(supervised SOM), we estimate the bending rigidity from only the acoustic energy pattern effectively. The experimental result with real bill samples shows the effectiveness of the proposed method.

  15. Magnesium Recycling of Partially Oxidized, Mixed Magnesium-Aluminum Scrap Through Combined Refining and Solid Oxide Membrane (SOM) Electrolysis Processes

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Guan, Xiaofei; Zink, Peter; Pal, Uday

    2012-03-11

    Pure magnesium (Mg) is recycled from 19g of partially oxidized 50.5wt.%Mg-Aluminum (Al) alloy. During the refining process, potentiodynamic scans (PDS) were performed to determine the electrorefining potential for magnesium. The PDS show that the electrorefining potential increases over time as the Mg content inside the Mg-Al scrap decreases. Up to 100% percent of magnesium is refined from the Mg-Al scrap by a novel refining process of dissolving magnesium and its oxide into a flux followed by vapor phase removal of dissolved magnesium and subsequently condensing the magnesium vapors in a separate condenser. The solid oxide membrane (SOM) electrolysis process ismore » employed in the refining system to enable additional recycling of magnesium from magnesium oxide (MgO) in the partially oxidized Mg-Al scrap. The combination of the refining and SOM processes yields 7.4g of pure magnesium; could not collect and weigh all of the magnesium recovered.« less

  16. Expanding Upon the MEMS Framework: How Temperature Impacts Organo-Mineral Interactions

    NASA Astrophysics Data System (ADS)

    Smith, K.; Waring, B. G.

    2017-12-01

    Microbial substrate use efficiency (SUE; the fraction of substrate carbon (C) incorporated into biomass vs. respired) affects the development of soil organic matter (SOM). An emerging theoretical model (the Microbial Efficiency-Matrix Stabilization (MEMS) framework) posits that microbial SUE acts as a filter for plant litter inputs, whereby a larger proportion of microbial products are synthesized from labile (and not recalcitrant) plant substrates. Thus, SOM stability depends on both the efficiency of microbial anabolism as well as the degree to which microbial products stabilize within the mineral soil matrix. In this study, we performed a laboratory microcosm experiment using diverse soils collected in Utah to test how substrate complexity, soil mineralogy, and temperature interact to control SOM formation. Prior to microcosm setup, we first removed organic C from our field soils by washing with concentrated hypochlorite solution. Microcosms were then assembled by mixing C-free soil with one of three substrates (glucose, cellulose, and lignin), and placed in incubators set to different temperatures (18°, 28°, and 38°C). Respiration rates were then estimated by periodically sampling headspace CO2 concentrations in each microcosm. Prior to C removal, we found that field soils exhibited distinct properties ranging from clay-rich vertisols (55:27:18, sand:silt:clay; 1.1% C), to loamy-sand entisols (85:11:4; 0.3% C), and organic-rich mollisols (79:17:4; 1.7% C). In the incubation experiment, consistent with enzyme kinetics theory, respiration rates increased as a function of incubation temperature (p < 0.0001), and that the temperature response of respiration was dependent on substrate (p < 0.0001), with the lignin treatment exhibiting the greatest temperature sensitivity. While respiration was significantly lower in the mollisol treatment (p < 0.0001), other soil effects (including interactions with temperature and substrate) were less clear. Together these

  17. Rapid soil formation after glacial retreat shaped by spatial patterns of organic matter accrual in microaggregates.

    PubMed

    Schweizer, Steffen A; Hoeschen, Carmen; Schlüter, Steffen; Kögel-Knabner, Ingrid; Mueller, Carsten W

    2018-04-01

    Global change contributes to the retreat of glaciers at unprecedented rates. The deglaciation facilitates biogeochemical processes on glacial deposits with initiating soil formation as an important driver of evolving ecosystems. The underlying mechanisms of soil formation and the association of soil organic matter (SOM) with mineral particles remain unclear, although further insights are critical to understand carbon sequestration in soils. We investigated the microspatial arrangement of SOM coatings at intact soil microaggregate structures during various stages of ecosystem development from 15 to >700 years after deglaciation in the proglacial environment of the Damma glacier (Switzerland). The functionally important clay-sized fraction (<2 μm) was separated into two density fractions with different amounts of organo-mineral associations: light (1.6-2.2 g/cm 3 ) and heavy (>2.2 g/cm 3 ). To quantify how SOM extends across the surface of mineral particles (coverage) and whether SOM coatings are distributed in fragmented or connected patterns (connectivity), we developed an image analysis protocol based on nanoscale secondary ion mass spectrometry (NanoSIMS). We classified SOM and mineral areas depending on the 16 O - , 12 C - , and 12 C 14 N - distributions. With increasing time after glacial retreat, the microspatial coverage and connectivity of SOM increased rapidly. The rapid soil formation led to a succession of patchy distributed to more connected SOM coatings on soil microaggregates. The maximum coverage of 55% at >700 years suggests direct evidence for SOM sequestration being decoupled from the mineral surface, as it was not completely masked by SOM and retained its functionality as an ion exchange site. The chemical composition of SOM coatings showed a rapid change toward a higher CN:C ratio already at 75 years after glacial retreat, which was associated with microbial succession patterns reflecting high N assimilation. Our results demonstrate that

  18. Labile glycated haemoglobin and carbamylated haemoglobin are still critical points for HbA1c measurement.

    PubMed

    Desmons, Aurore; Jaisson, Stéphane; Leroy, Nathalie; Gillery, Philippe; Guillard, Emmanuelle

    2017-06-15

    Haemoglobin A 1c (HbA 1c ) is a key analyte for the monitoring of glycemic balance in diabetic patients and is used for diabetes diagnosis in many countries. The potential interference of carbamylated haemoglobin (cHb) and labile glycated haemoglobin (LA 1c ) on HbA 1c assays must remain a matter of vigilance. Such a situation has occurred in our laboratory with a kit replacement on the Bio-Rad Variant™ II testing system, a cation-exchange high performance liquid chromatography (HPLC) system. With this method, LA 1c and cHb coeluted in a same peak which may have different consequences on HbA 1c values. The influence of increasing LA 1c and cHb values on HbA 1c results was studied with in vitro glycation and carbamylation of samples. Samples from patients with high and normal blood urea concentrations were assayed by HPLC and immunological assay. We observed that the degree of interference greatly varied depending on the nature of the interfering Hb fractions found under the so-called "LA 1c peak". Thus, we have decided to apply a decision tree using "LA 1c " thresholds depending on: (i) the retention time, (ii) the shape of the peak, (iii) other analytes, like urea. If the peak recognized as "LA 1c " is mainly formed by LA 1c, we consider that there is no interference until 4%. If the peak is mainly formed by cHb, we consider an interference threshold equal to 2%. This situation reminds that cHb and LA 1c remain critical issues in chromatography-based HbA 1c assays and that adapted criteria must be set up for result interpretation.

  19. A universal fluorogenic switch for Fe(ii) ion based on N-oxide chemistry permits the visualization of intracellular redox equilibrium shift towards labile iron in hypoxic tumor cells.

    PubMed

    Hirayama, Tasuku; Tsuboi, Hitomi; Niwa, Masato; Miki, Ayaji; Kadota, Satoki; Ikeshita, Yukie; Okuda, Kensuke; Nagasawa, Hideko

    2017-07-01

    Iron (Fe) species play a number of biologically and pathologically important roles. In particular, iron is a key element in oxygen sensing in living tissue where its metabolism is intimately linked with oxygen metabolism. Regulation of redox balance of labile iron species to prevent the generation of iron-catalyzed reactive oxygen species (ROS) is critical to survival. However, studies on the redox homeostasis of iron species are challenging because of a lack of a redox-state-specific detection method for iron, in particular, labile Fe 2+ . In this study, a universal fluorogenic switching system is established, which is responsive to Fe 2+ ion based on a unique N-oxide chemistry in which dialkylarylamine N-oxide is selectively deoxygenized by Fe 2+ to generate various fluorescent probes of Fe 2+ -CoNox-1 (blue), FluNox-1 (green), and SiRhoNox-1 (red). All the probes exhibited fluorescence enhancement against Fe 2+ with high selectivity both in cuvette and in living cells. Among the probes, SiRhoNox-1 showed an excellent fluorescence response with respect to both reaction rate and off/on signal contrast. Imaging studies were performed showing the intracellular redox equilibrium shift towards labile iron in response to reduced oxygen tension in living cells and 3D tumor spheroids using SiRhoNox-1, and it was found that the hypoxia induction of labile Fe 2+ is independent of iron uptake, hypoxia-induced signaling, and hypoxia-activated enzymes. The present studies demonstrate the feasibility of developing sensitive and specific fluorescent probes for Fe 2+ with refined photophysical characteristics that enable their broad application in the study of iron in various physiological and pathological conditions.

  20. Multivariate Statistical Analysis of Labile Trace Elements in H Chondrites: Evidence for Meteoroid Streams

    NASA Astrophysics Data System (ADS)

    Wolf, S. F.; Lipschutz, M. E.

    1992-07-01

    Differences have been observed between meteorite populations with vastly different terrestrial ages, i.e. Antarctic and non-Antarctic meteorite populations (Koeberl and Cassidy, 1991 and references therein). Comparisons of labile trace element contents (Wolf and Lipschutz, 1992) and induced TL parameters (Benoit and Sears, 1992) in samples from Victoria Land and Queen Maud Land, populations which also differ in mean terrestrial age (Nishiizumi et al, 1989), show significant differences consistent with different average thermal histories. These differences are consistent with the proposition that the flux of meteoritic material to Earth varied temporally. Variations in the flux of meteoritic material over time scales of 10^5 10^6 y require the existence of undispersed streams of meteoroids of asteroidal origin which were initially disputed by Wetherill ( 1986) but have since been observed (Olsson-Steele, 1988; Oberst, 1989; Halliday et al. 1990). Orbital evidence for meteoroid and asteroid streams has been independently obtained by others, particularly Halliday et al.(1990) and Drummond (1991). A group of H chondrites of various petrographic types and diverse CRE ages that yielded 16 falls from 1855 until 1895 in the month of May has been proposed to be two co-orbital meteoroid streams with a common source (R. T. Dodd, personal communication). Compositional evidence of a preterrestrial association of the proposed stream members, if it exists, might be observed in the most sensitive indicators of genetic thermal history, the labile trace elements. We report RNAA data for the concentrations of 14 trace elements, mostly labile ones, (Ag, Au, Bi, Cd, Cs, Co, Ga, In, Rb, Sb, Se, Te, Tl, and Zn) in H4-6 ordinary chondrites. Variance of elemental concentrations within a subpopulation, the members of a proposed co-orbital meteorite stream for example, could be expected to be smaller than the variance for the entire population. We utilize multivariate linear regression and

  1. Compositon of sediments transported by the wind at different heights

    NASA Astrophysics Data System (ADS)

    Iturri, Antonela; Funk, Roger; Leue, Martin; Sommer, Michael; Buschiazzo, Daniel

    2017-04-01

    Wind erosion (WE) is one of the most important degradation process of soils in arid- and semiarid environments in the world, affecting soil properties and adjacent ecosystems, including human health. Estimations about the amount of eroded soil are available in Argentina and in the world, but the quality of the eroded sediments, particularly the sorting effects in agricultural soils, has been scarcely studied. The trend of the different mineral and organic soil compounds, which enrich in different size classes, can define height distribution profiles. Therefore, the uppermost 2.5 cm of four agricultural loess soils that differ in granulometric composition were used for WE simulations in a wind tunnel. Particles with a diameter smaller than 10 µm (PM10) were collected with a laboratory dust generator. The bulk soil and all the sediment samples were characterized by the granulometric composition, the soil organic carbon (SOC) content and the mineral and organic functional groups. Despite different texture, the soils were subjected to similar sorting processes in height, but differed depending on their granulometry. There was a separation between coarser and finer soil particles in coarser textured soils, while finer textured soils were more homogeneous in all heights. This correlated with the preferential transport of Si-O from quartz and C-H, C=O and C-C from soil organic matter (SOM), which were transported in larger and/or denser particles at lower heights. O-H from clay minerals and C-O-C and C-O from polysaccharides, carbohydrates and derivatives from SOM were transported in higher heights. Despite similar SOC content in the bulk soils, both the amount and composition in the PM10 fractions was different. The SOC transported at higher heights was mostly composed of polysaccharides, carbohydrates and derivatives associated with clay minerals. The SOC in PM10 fractions of coarser-textured soils was dominated by labile C-H groups. According to the determined height

  2. Trace metal fractionation as a mean to improve on the management of contaminated sediments from runoff water in infiltration basins.

    PubMed

    Al Husseini, Amelène El-Mufleh; Béchet, Béatrice; Gaudin, Anne; Ruban, Véronique

    2013-01-01

    The management of stormwater sediment is a key issue for local authorities due to the pollution load and significant tonnages. In view of reuse, for example for civil engineering, the environmental evaluation of these highly aggregated sediments requires the study of the fractionation and mobility of trace metals. The distribution of trace metals (Cd, Cr, Cu, Ni, Pb, Zn) and their level of lability in three French stormwater sediments was determined using sequential and kinetic extractions (EDTA reagent) associated with mineralogical analysis and scanning electron microscopy observations. Using microanalysis, new data were acquired on the evolution of aggregate state during extractions, and on its significant role in the retention of trace metals. Trace metals were, in particular, observed to be very stable in small aggregates (10-50 microm). Comparison of the two extraction methods revealed that EDTA extraction was not convenient for evaluating the stable fraction of Cr, Ni and Zn. Moreover, the results were relevant for basins presenting similar sources of trace metals, whatever the physicochemical conditions in basins. The results suggest that the management of stormwater sediments could be improved by a better knowledge of metal mobility, as chemical extractions could highlight the localization of the mobile fraction of trace metals. Treatment could be therefore avoided, or specific treatment could be applied to a reduced volume of sediments.

  3. Structure-Property-Function Relationship in Humic Substances to Explain the Biological Activity in Plants

    PubMed Central

    García, Andrés Calderín; de Souza, Luiz Gilberto Ambrosio; Pereira, Marcos Gervasio; Castro, Rosane Nora; García-Mina, José María; Zonta, Everaldo; Lisboa, Francy Junior Gonçalves; Berbara, Ricardo Luis Louro

    2016-01-01

    Knowledge of the structure-property-function relationship of humic substances (HSs) is key for understanding their role in soil. Despite progress, studies on this topic are still under discussion. We analyzed 37 humic fractions with respect to their isotopic composition, structural characteristics, and properties responsible for stimulating plant root parameters. We showed that regardless of the source of origin of the carbon (C3 or C4), soil-extracted HSs and humic acids (HAs) are structurally similar to each other. The more labile and functionalized HS fraction is responsible for root emission, whereas the more recalcitrant and less functionalized HA fraction is related to root growth. Labile structures promote root stimulation at lower concentrations, while recalcitrant structures require higher concentrations to promote a similar stimulus. These findings show that lability and recalcitrance, which are derived properties of humic fractions, are related to the type and intensity of their bioactivity. In summary, the comparison of humic fractions allowed a better understanding of the relationship between the source of origin of plant carbon and the structure, properties, and type and intensity of the bioactivity of HSs in plants. In this study, scientific concepts are unified and the basis for the agronomic use of HSs is established. PMID:26862010

  4. On the Labile Memory Buffer in the Attentional Blink: Masking the T2 Representation by Onset Transients Mediates the AB

    ERIC Educational Resources Information Center

    Jannati, Ali; Spalek, Thomas M.; Di Lollo, Vincent

    2011-01-01

    Report of a second target (T2) is impaired when presented within 500 ms of the first (T1). This attentional blink (AB) is known to cause a delay in T2 processing during which T2 must be stored in a labile memory buffer. We explored the buffer's characteristics using different types of masks after T2. These characteristics were inferred by…

  5. Soil Carbon Losses after Rainforest Conversion to Oil Palm and Rubber Plantations: Processes and Sensitivity of Soil Fertility Indicators Assessed by a New Approach

    NASA Astrophysics Data System (ADS)

    Guillaume, T.; Maranguit, D.; Murtilaksono, K.; Kuzyakov, Y.

    2015-12-01

    Tropical forest conversion to agricultural land leads to strong decrease of soil organic matter (SOM). Nonetheless, the magnitude of SOM losses and their impacts on soil fertility in oil palm and rubber plantations remain unclear, despite the large scale extension of such land-use types. We quantified SOM losses, and estimated soil erosion and changes in SOM turnover using SOM δ13C values in forest, oil palm plantations, extensive rubber plantations and rubber monocultures on Sumatra Island (Indonesia). Further, we assessed the response of biological (basal respiration, microbial biomass, acid phosphatase) and chemical fertility indicators (light fraction, DOC, total N, available P) to SOM losses. We used a new approach based on (non-)linear regressions between SOM losses and the indices standardized to natural ecosystem. Carbon contents in the Ah horizon under oil palm and rubber plantations were strongly reduced: up to 70% and 62%, respectively. The decrease was lower under extensive rubber (41%). The estimated erosion was the strongest in oil palm (35±8 cm) and rubber (33±10 cm) plantations. The SOM 13C enrichment used as a proxy of its turnover indicates a decrease of SOM turnover under oil palm after forest conversion. The negative impact of land-use changes on all measured indicators increased in the following sequence: forest > extensive rubber > rubber > oil palm. The basal respiration, microbial biomass and nutrients were comparatively resistant to SOM losses, whereas the light fraction was lost faster than the SOM. The resistance of the microbial activity to SOM losses is an indication that the microbial functions sustain SOM losses. However, responses of basal respiration and microbial biomass to SOM losses were non-linear. Below 2.7 % C content, the relationship was reversed. The basal respiration decreased faster than the SOM, resulting in a stronger drop of microbial activity under oil palm compared to rubber despite small difference in C content

  6. EFFECTS OF CLIMATE CHANGE ON LABILE AND STRUCTURAL CARBON IN DOUGLAS-FIR NEEDLES AS ESTIMATED BY DELTA 13C AND C AREA MEASUREMENTS

    EPA Science Inventory

    Isotopic measurements may provide new insights into levels in leaves of labile and structural carbon (C) under climate change. In a 4-year climate change experiment using Pseudotsuga menziesii (Douglas-fir) seedlings and a 2x2 factorial design in enclosed chambers (n=3), atmosph...

  7. Ultrafast photochemistry of polyatomic molecules containing labile halogen atoms in solution

    NASA Astrophysics Data System (ADS)

    Mereshchenko, Andrey S.

    Because breaking and making of chemical bonds lies at the heart of chemistry, this thesis focuses on dynamic studies of labile molecules in solutions using ultrafast transient absorption spectroscopy. Specifically, my interest is two-fold: (i) novel reaction intermediates of polyhalogenated carbon, boron and phosphorus compounds; (ii) photophysics and photochemistry of labile copper(II) halide complexes. Excitation of CH2Br2, CHBr3, BBr 3, and PBr3 into n(Br)sigma*(X-Br) states, where X=C, B, or P, leads to direct photoisomerization with formation of isomers having Br-Br bonds as well as rupture of one of X-Br bonds with the formation of a Br atom and a polyatomic radical fragment, which subsequently recombine to form similar isomer products. Nonpolar solvation stabilizes the isomers, consistent with intrinsic reaction coordinate calculations of the isomer ground state potential energy surfaces at the density functional level of theory, and consequently, the involvement of these highly energetic species on chemically-relevant time scales needs to be taken into account. Monochlorocomplexes in methanol solutions promoted to the ligand-to-metal charge transfer (LMCT) excited state predominantly undergo internal conversion via back electron transfer, giving rise to vibrationally hot ground-state parent complexes. Copper-chloride homolitical bond dissociation yielding the solvated copper(I) and Cl- atom/solvent CT complexes constitutes a minor pathway. Insights into ligand substitution mechanisms were acquired by monitoring the recovery of monochloro complexes at the expense of two unexcited dichloro- and unsubstituted forms of Cu(II) complexes also present in the solution. Detailed description of ultrafast excited-state dynamics of CuCl 42- complexes in acetonitrile upon excitation into all possible Ligand Field (LF) excited states and two most intense LMCT transitions is reported. The LF states were found to be nonreactive with lifetimes remarkably longer than those

  8. [Variations of soil labile organic carbon along an altitude gradient in Wuyi Mountain].

    PubMed

    Xu, Xia; Chen, Yue-Qin; Wang, Jia-She; Fang, Yan-Hong; Quan, Wei; Ruan, Hong-Hua; Xu, Zi-Kun

    2008-03-01

    By using sequential fumigation-incubation method, this paper determined the soil labile organic carbon (LOC) content under evergreen broadleaf forest, coniferous forest, sub-alpine dwarf forest, and alpine meadow along an altitude gradient in Wuyi Mountain National Nature Reserve in Fujian Province of China, with its relations to soil microbial biomass carbon (MBC), total organic carbon (TOC), total nitrogen (TN), and fine root biomass (FRB) analyzed. The results showed that soil LOC occupied 3.40%-7.46% of soil TOC, and soil MBC occupied 26.87%-80.38% of the LOC. The LOC under different forest stands increased significantly with altitude, and decreased with soil depth. Soil LOC had very significant correlations with soil MBC, TOC, TN and FRB, and its content was obviously higher at higher altitudes than at lower altitudes.

  9. New analytical technique for establishing the quality of Soil Organic Matter affected by a wildfire. A first approach using Fourier transform ion cyclotron resonance mass spectrometry

    NASA Astrophysics Data System (ADS)

    Jiménez-Morillo, Nicasio T.; González-Pérez, José A.; Waggoner, Derek C.; Almendros, Gonzalo; González-Vila, Francisco J.; Hatcher, Patrick G.

    2016-04-01

    Introduction: Fire is one of the most important modulator factors of the environment and the forest. It is able to induce chemical and biological shifts and these, in turn, can alter the physical properties of soil. Generally, fire affects the most reactive fraction, soil organic matter (SOM) (González-Pérez et al., 2004) resulting in changes to several soil properties and functions. To study changes in SOM following a wildfire, researchers can count on several traditional as well as new analytical techniques. One of the most recently employed techniques is Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS). This new powerful ultra-high resolution mass spectral technique, together with graphic interpretation tools such as van Krevelen diagrams (Kim et al, 2003), may be used to shed light on alterations caused by the burning of SOM. The objective of this research is to study fire impacts on SOM, using a sandy soil collected under a Cork oak (Quercus suber) in Doñana National Park, Southwest Spain. that was affected by a wildfire in August 2012. Methods: The impact of fire on SOM was studied in various different sieve fractions (coarse, 1-2 mm, and fine, <0.05 mm) collected in a burned area and an adjacent unburned control site with the same physiographic conditions. Alkaline extracts of SOM from each soil sample were examined using a Bruker Daltonics 12 Tesla Apex Qe FT-ICR-MS equipped with an Apollo II ESI ion source (operating in negative ion mode). The ESI voltages were optimized for each sample, and all spectra were internally calibrated following the procedure of (Sleighter and Hatcher, 2007), after which, peaks were assigned unique molecular formulas using a MatLab script written in house by Dr. Wassim Obeid of Old Dominion University. Results: The van Krevelen diagrams together with the relative intensity of each chemical compound, both obtained by FT-ICR-MS, allowed us to assess SOM quality for each sample and size fractions. The

  10. Copper in soil fractions and runoff in a vineyard catchment: Insights from copper stable isotopes.

    PubMed

    Babcsányi, Izabella; Chabaux, François; Granet, Mathieu; Meite, Fatima; Payraudeau, Sylvain; Duplay, Joëlle; Imfeld, Gwenaël

    2016-07-01

    Understanding the fate of copper (Cu) fungicides in vineyard soils and catchments is a prerequisite to limit the off-site impact of Cu. Using Cu stable isotopes, Cu retention in soils and runoff transport was investigated in relation to the use of Cu fungicides and the hydrological conditions in a vineyard catchment (Rouffach, Haut-Rhin, France; mean slope: 15%). The δ(65)Cu values of the bulk vineyard soil varied moderately through the depth of the soil profiles (-0.12 to 0.24‰±0.08‰). The values were in the range of those of the fungicides (-0.21 to 0.11‰) and included the geogenic δ(65)Cu value of the untreated soil (0.08‰). However, δ(65)Cu values significantly differed between particle-size soil fractions (-0.37±0.10‰ in fine clays and 0.23±0.07‰ in silt). Together with the soil mineralogy, the results suggested Cu isotope fractionation primarily associated with the clay and fine clay fractions that include both SOM and mineral phases. The vegetation did not affect the Cu isotope patterns in the vineyard soils. Cu export by runoff from the catchment accounted for 1% of the applied Cu mass from 11th May to 20(th) July 2011, covering most of the Cu use period. 84% of the exported Cu mass was Cu bound to suspended particulate matter (SPM). The runoff displayed δ(65)Cu values from 0.52 to 1.35‰ in the dissolved phase (<0.45μm) compared to -0.34 to -0.02‰ in the SPM phase, indicating that clay and fine clay fractions were the main vectors of SPM-bound Cu in runoff. Overall, this study shows that Cu stable isotopes may allow identifying the Cu distribution in the soil fractions and their contribution to Cu export in runoff from Cu-contaminated catchments. Copyright © 2016 Elsevier B.V. All rights reserved.

  11. Geochemistry of the Shuksan greenschists and blueschists, North Cascades, Washington: Variably fractionated and altered metabasalts of oceanic affinity

    NASA Astrophysics Data System (ADS)

    Dungan, M. A.; Vance, J. A.; Blanchard, D. P.

    1983-06-01

    The Shuksan schist comprises a structurally coherent, metabasaltic member of the Easton Formation, the uppermost allochthon (Shuksan thrust plate) in the thrust system of the western North Cascades of Washington State. Late Jurassic metamorphism at moderately high P/T produced interlayering of actinolite-bearing greenschist assemblages with blue amphibole-bearing rocks. Major and trace element analyses of twelve greenschist and blueschist samples have been used to establish similarities between the basaltic protolith and moderately to strongly fractionated Type I MORB, to distinguish the effects of seafloor alteration superimposed on the primary igneous chemistry, and to evaluate the origin and nature of the chemical controls which produced the two mineral assemblages. The twelve analyzed samples exhibit moderate to strong LREE depletion, and characteristically low concentrations of other non-labile trace elements such as Nb, Th and Hf. The highly to moderately incompatible elements Ti, P, Nb, Zr, Hf, Y, Sc, and the REE vary by factors of 1.5 to 3.5 within the suite in a systematic pattern, increasing smoothly with increasing total iron. The relative enrichments of these elements are inversely proportional to bulk partition coefficients estimated for fractionation of basaltic magmas. The magnitude of the negative europium anomaly increases with overall incompatible element enrichment. These variations are consistent with the production of a wide spectrum of compositions by different degrees of low pressure fractionation of similar Type I MORB parent magmas. The concentrations of Sr, Rb, Na, and K vary irregularly and do not correlate with the non-labile trace elements. K and Rb are substantially elevated over typical MORB values in most samples and exhibit a consistently lower ratio (K/Rb=400 vs 1000) than fresh MORB. Concentrations of these four elements are believed to have been modified by low temperature seafloor alteration (pre-metamorphic) characterized by

  12. Valence Focus and Self-Esteem Lability: Reacting to Hedonic Cues in the Social Environment

    PubMed Central

    Pietromonaco, Paula R.; Barrett, Lisa Feldman

    2010-01-01

    Individuals differ in the extent to which they emphasize feelings of pleasure or displeasure in their verbal reports of emotional experience, termed valence focus (VF). Two event-contingent, experience-sampling studies examined the relationship between VF and sensitivity to pleasant and unpleasant social cues. It was predicted, and found, that individuals with greater VF (i.e., who emphasized feelings of pleasure/displeasure in reports of emotional experience) demonstrated greater self-esteem lability (i.e., larger changes in self-esteem) to pleasant and unpleasant information contained in social interactions than did those lower in VF. These effects held even after statistically controlling for possible confounding variables (neuroticism, affect intensity). Implications for understanding the psychological impact of valenced interpersonal events are discussed. PMID:19485618

  13. Conversion of rainforest into agroforestry and monoculture plantation in China: Consequences for soil phosphorus forms and microbial community.

    PubMed

    Wang, Jinchuang; Ren, Changqi; Cheng, Hanting; Zou, Yukun; Bughio, Mansoor Ahmed; Li, Qinfen

    2017-10-01

    Microbial communities and their associated enzyme activities affect quantity and quality of phosphorus (P) in soils. Land use change is likely to alter microbial community structure and feedback on ecosystem structure and function. This study presents a novel assessment of mechanistic links between microbial responses to land use and shifts in the amount and quality of soil phosphorus (P). We investigated effects of the conversion of rainforests into rubber agroforests (AF), young rubber (YR), and mature rubber (MR) plantations on soil P fractions (i.e., labile P, moderately labile P, occluded P, Ca P, and residual P) in Hainan Island, Southern China. Microbial community composition and microbial enzyme were assayed to assess microbial community response to forest conversion. In addition, we also identified soil P fractions that were closely related to soil microbial and chemical properties in these forests. Conversion of forest to pure rubber plantations and agroforestry system caused a negative response in soil microorganisms and activity. The bacteria phospholipid fatty acid (PLFAs) levels in young rubber, mature rubber and rubber agroforests decreased after forest conversion, while the fungal PLFAs levels did not change. Arbuscular mycorrhizal fungi (AMF) (16:1w5c) had the highest value of 0.246μmol(gOC) -1 in natural forest, followed by rubber agroforests, mature rubber and young rubber. Level of soil acid phosphatase activity declined soon (5 years) after forest conversion compared to natural forest, but it improved in mature rubber and agroforestry system. Labile P, moderately labile P, occluded P and residual P were highest in young rubber stands, while moderately labile, occluded and residual P were lowest in rubber agroforestry system. Soil P fractions such as labile P, moderately labile P, and Ca P were the most important contributors to the variation in soil microbial community composition. We also found that soil P factions differ significantly among

  14. Fractional vector calculus for fractional advection dispersion

    NASA Astrophysics Data System (ADS)

    Meerschaert, Mark M.; Mortensen, Jeff; Wheatcraft, Stephen W.

    2006-07-01

    We develop the basic tools of fractional vector calculus including a fractional derivative version of the gradient, divergence, and curl, and a fractional divergence theorem and Stokes theorem. These basic tools are then applied to provide a physical explanation for the fractional advection-dispersion equation for flow in heterogeneous porous media.

  15. Temporal Changes in Photochemically Labile DOM and Implications for Carbon Budgets in Peatland Aquatic Systems

    NASA Astrophysics Data System (ADS)

    Pickard, A.

    2015-12-01

    Aquatic systems in peatland catchments are subject to high loading of dissolved organic matter (DOM) from surrounding terrestrial environments. However the significance of photochemical transformation of DOM in peatland carbon budgets remains poorly constrained. In this study UV irradiation experiments were conducted on water samples collected over one year from two contrasting systems in Scotland: a stream draining a peatland with high levels of DOM and a reservoir draining a peat catchment with low levels of DOM. Further samples were collected from the high DOM system during two storm events. After experimental exposure, optical and chemical analyses were employed to determine photochemical lability of the DOM pool. At both sites irradiation-induced decreases in dissolved organic carbon (DOC) as a percentage of the total carbon pool were greatest in winter, suggesting that DOM was depleted in photo-reactive molecules in summer. Seasonal variability in DOC was high at the stream site and was positively correlated with CO₂ and CO photoproduction (r2 = 0.81 and 0.83, respectively; p<0.05). Lignin phenol analyses indicate considerable contribution of peat to the DOM pool at the stream site, particularly during summer. Whilst DOC concentrations did not vary greatly during storm events, UV-Vis absorbance indicators did, signifying changing DOM source material from activation of different hydrological pathways. The most photo-reactive DOM occurred 5-10 hours after peak discharge, suggesting that storms replenish photochemically labile DOM in headwater streams. Conservative estimates using data from this study suggest that up to 7% of the DOM pool of peatland streams can be lost (primarily as CO₂ and CO) upon exposure to 8 hours of environmentally representative UV irradiation. Further investigation in field campaigns under natural UV exposure are underway to assess the importance of photodegradation of DOM as a loss pathway of carbon based gases from aquatic systems.

  16. Distribution characteristic of soil organic carbon fraction in different types of wetland in Hongze Lake of China.

    PubMed

    Lu, Yan; Xu, Hongwen

    2014-01-01

    Soil organic carbon fractions included microbial biomass carbon (MBC), dissolved organic carbon (DOC), and labile organic carbon (LOC), which was investigated over a 0-20 cm depth profile in three types of wetland in Hongze Lake of China. Their ecoenvironmental effect and the relationships with soil organic carbon (SOC) were analyzed in present experiment. The results showed that both active and SOC contents were in order reduced by estuarine wetland, flood plain, and out-of-lake wetland. Pearson correlative analysis indicated that MBC and DOC were positively related to SOC. The lowest ratios of MBC and DOC to SOC in the estuarine wetland suggested that the turnover rate of microbial active carbon pool was fairly low in this kind of wetland. Our results showed that estuarine wetland had a strong carbon sink function, which played important role in reducing greenhouse gas emissions; besides, changes of water condition might affect the accumulation and decomposition of organic carbon in the wetland soils.

  17. Distribution Characteristic of Soil Organic Carbon Fraction in Different Types of Wetland in Hongze Lake of China

    PubMed Central

    Lu, Yan; Xu, Hongwen

    2014-01-01

    Soil organic carbon fractions included microbial biomass carbon (MBC), dissolved organic carbon (DOC), and labile organic carbon (LOC), which was investigated over a 0–20 cm depth profile in three types of wetland in Hongze Lake of China. Their ecoenvironmental effect and the relationships with soil organic carbon (SOC) were analyzed in present experiment. The results showed that both active and SOC contents were in order reduced by estuarine wetland, flood plain, and out-of-lake wetland. Pearson correlative analysis indicated that MBC and DOC were positively related to SOC. The lowest ratios of MBC and DOC to SOC in the estuarine wetland suggested that the turnover rate of microbial active carbon pool was fairly low in this kind of wetland. Our results showed that estuarine wetland had a strong carbon sink function, which played important role in reducing greenhouse gas emissions; besides, changes of water condition might affect the accumulation and decomposition of organic carbon in the wetland soils. PMID:24971377

  18. The application of "double isolation" in Fourier transform ion cyclotron resonance sustained off-resonance irradiation collisionally-induced dissociation tandem mass spectrometry to remove labile isobaric impurities.

    PubMed

    Gates, Paul J; Lopes, Norberto P; Pinto, Emani; Colepicolo, Pio; Cardozo, Karina H M

    2011-01-01

    This study reports the application of "double isolation" in sustained off-resonance irradiation collisionally-induced dissociation tandem mass spectrometry (SORI-CID-MS/MS) to remove radio- frequency (RF) fragment ions of very close mass isobaric ions (0.02 m/z apart). Analyses were performed with a fraction of a biological extract isolated from a macroalgae containing the mycosporine-like amino acid asterina-330. Direct isolation of the precursor ion by narrowing the isolation window proved ineffective as it impinged upon the required ion thus substantially reducing its intensity. By increasing the correlated sweep time, ejection efficiency of the isolation was improved, but caused the unwanted side-effect of RF fragmentation of labile ions. Finally, by skipping the ion activation step and performing a second isolation (in the MS(3) module) the RF fragments from the first isolation were removed leaving a very pure isolation of the required precursor ion and allowed a very clean CID fragmentation. We demonstrated that the m/z 272.1351 ion is derived from the loss of NH(3) from m/z 289.1620 isobaric impurity and is not related to asterina-330. This application represents a powerful tool to remove unwanted ions in the MS/MS spectrum that result from fragmentation of isobaric ions.

  19. Expression and immunogenicity of enterotoxigenic Escherichia coli heat-labile toxin B subunit in transgenic rice callus.

    PubMed

    Kim, Tae-Geum; Kim, Bang-Geul; Kim, Mi-Young; Choi, Jae-Kwon; Jung, Eun-Sun; Yang, Moon-Sik

    2010-01-01

    Enterotoxigenic Escherichia coli is one of the leading causes of diarrhea in developing countries, and the disease may be fatal in the absence of treatment. Enterotoxigenic E. coli heat-labile toxin B subunit (LTB) can be used as an adjuvant, as a carrier of fused antigens, or as an antigen itself. The synthetic LTB (sLTB) gene, optimized for plant codon usage, has been introduced into rice cells by particle bombardment-mediated transformation. The integration and expression of the sLTB gene were observed via genomic DNA PCR and western blot analysis, respectively. The binding activity of LTB protein expressed in transgenic rice callus to G(M1)-ganglioside, a receptor for biologically active LTB, was confirmed by G(M1)-ELISA. Oral inoculation of mice with lyophilized transgenic rice calli containing LTB generated significant IgG antibody titers against bacterial LTB, and the sera of immunized mice inhibited the binding of bacterial LTB to G(M1)-ganglioside. Mice orally immunized with non-transgenic rice calli failed to generate detectable anti-LTB IgG antibody titers. Mice immunized with plant-produced LTB generated higher IgG1 antibody titers than IgG2a, indicating a Th2-type immune response. Mice orally immunized with lyophilized transgenic rice calli containing LTB elicited higher fecal IgA antibody titers than mice immunized with non-transgenic rice calli. These experimental results demonstrate that LTB proteins produced in transgenic rice callus and given to mice by oral administration induce humoral and secreted antibody immune responses. We suggest that transgenic rice callus may be suitable as a plant-based edible vaccine to provide effective protection against enterotoxigenic E. coli heat-labile toxin.

  20. Stress-induced resistance to the fear memory labilization/reconsolidation process. Involvement of the basolateral amygdala complex.

    PubMed

    Espejo, Pablo Javier; Ortiz, Vanesa; Martijena, Irene Delia; Molina, Victor Alejandro

    2016-10-01

    Consolidated memories can enter into a labile state after reactivation followed by a restabilization process defined as reconsolidation. This process can be interfered with Midazolam (MDZ), a positive allosteric modulator of the GABA-A receptor. The present study has evaluated the influence of prior stress on MDZ's interfering effect. We also assessed the influence of both systemic and intra-basolateral amygdala (BLA) infusion of d-cycloserine (DCS), a partial agonist of the NMDA receptors, on the MDZ effect in previously stressed rats. Furthermore, we analyzed the effect of stress on the expression of Zif-268 and the GluN2B sites, two molecular markers of the labilization/reconsolidation process, following reactivation. The results revealed that prior stress resulted into a memory trace that was insensitive to the MDZ impairing effect. Both systemic and intra-BLA DCS administration previous to reactivation restored MDZ's disruptive effect on memory reconsolidation in stressed animals. Further, reactivation enhanced Zif-268 expression in the BLA in control unstressed rats, whereas no elevation was observed in stressed animals. In agreement with the behavioral findings, DCS restored the increased level of Zif-268 expression in the BLA in stressed animals. Moreover, memory reactivation in unstressed animals elevated GluN2B expression in the BLA, thus suggesting that this effect is involved in memory destabilization, whereas stressed animals did not reveal any changes. These findings are consistent with resistance to the MDZ effect in these rats, indicating that stress exposure prevents the onset of destabilization following reactivation. In summary, prior stress limited both the occurrence of the reactivation-induced destabilization and restabilization. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Soil organic carbon dynamics under long-term fertilization in a black soil of China: Evidence from stable C isotopes

    PubMed Central

    Dou, Xiaolin; He, Ping; Zhu, Ping; Zhou, Wei

    2016-01-01

    Effects of different fertilizers on organic carbon (C) storage and turnover of soil fractions remains unclear. We combined soil fractionation with isotope analyses to examine soil organic carbon (SOC) dynamics after 25 years of fertilization. Five types of soil samples including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, N; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into four aggregate sizes (>2000 μm, 2000–250 μm, 250–53 μm, and <53 μm), and three density fractions: free light fraction (LF), intra-aggregate particulate organic matter (iPOM), and mineral-associated organic matter (mSOM). Physical fractionation showed the iPOM fraction of aggregates dominated C storage, averaging 76.87% of SOC storage. Overall, application of N and NPK fertilizers cannot significantly increase the SOC storage but enhanced C in mSOM of aggregates, whereas MNPK fertilizer resulted in the greatest amount of SOC storage (about 5221.5 g C m2) because of the enhanced SOC in LF, iPOM and mSOM of each aggregate. The SNPK fertilizer increased SOC storage in >250 μm aggregates but reduced SOC storage in <250 μm aggregates due to SOC changes in LF and iPOM. PMID:26898121

  2. Soil organic carbon dynamics under long-term fertilization in a black soil of China: Evidence from stable C isotopes.

    PubMed

    Dou, Xiaolin; He, Ping; Zhu, Ping; Zhou, Wei

    2016-02-22

    Effects of different fertilizers on organic carbon (C) storage and turnover of soil fractions remains unclear. We combined soil fractionation with isotope analyses to examine soil organic carbon (SOC) dynamics after 25 years of fertilization. Five types of soil samples including the initial level (CK) and four fertilization treatments (inorganic nitrogen fertilizer, N; balanced inorganic fertilizer, NPK; inorganic fertilizer plus farmyard manure, MNPK; inorganic fertilizer plus corn straw residue, SNPK) were separated into four aggregate sizes (>2000 μm, 2000-250 μm, 250-53 μm, and <53 μm), and three density fractions: free light fraction (LF), intra-aggregate particulate organic matter (iPOM), and mineral-associated organic matter (mSOM). Physical fractionation showed the iPOM fraction of aggregates dominated C storage, averaging 76.87% of SOC storage. Overall, application of N and NPK fertilizers cannot significantly increase the SOC storage but enhanced C in mSOM of aggregates, whereas MNPK fertilizer resulted in the greatest amount of SOC storage (about 5221.5 g C m(2)) because of the enhanced SOC in LF, iPOM and mSOM of each aggregate. The SNPK fertilizer increased SOC storage in >250 μm aggregates but reduced SOC storage in <250 μm aggregates due to SOC changes in LF and iPOM.

  3. Woody Plant Invasion of Grassland: Lignin and Aliphatic Biopolymer Chemistry and Carbon Isotope Composition in Physical Fractions

    NASA Astrophysics Data System (ADS)

    Gamblin, D.; Boutton, T.; Liao, J.; Jastrow, J.; Filley, T.

    2003-12-01

    degraded/freshest lignin of the physical fractions. This is consistent with the relatively shorter residence times determined for this fraction in this system. Continuing work includes compound specific isotope analysis of isolated lignin and hydroxyl fatty acids to elucidate biopolymer-specific turnover times which will provide important clues into the mechanisms of SOM storage and biopolymer recalcitrance.

  4. Toward a Simple Framework for Understanding the Influence of Litter Quality on Vertical and Horizontal Patterns of Soil Organic Matter Pools

    NASA Astrophysics Data System (ADS)

    Craig, M.; Phillips, R.

    2016-12-01

    Decades of research have revealed that plant litter quality fundamentally influences soil organic matter (SOM) properties. Yet we lack the predictive frameworks necessary to up-scale our understanding of these dynamics in biodiverse systems. Given that ectomycorrhizal (EM) and arbuscular mycorrhizal (AM) plants are thought to differ in their litter quality, we ask whether this dichotomy represents a framework for understanding litter quality effects on SOM in temperate forests. To do this, we sampled soils from 250 spatially referenced locations within a 25-Ha plot where 28,000 trees had been georeferenced, and analyzed spatial patterns of plant and SOM properties. We then examined the extent to which the dominance of AM- versus EM-trees relates to 1) the quality of litter inputs to forest soils and 2) the horizontal and vertical distribution of SOM fractions. We found that leaf litters produced by EM-associated trees were generally of lower quality, having a lower concentration of soluble compounds and higher C:N. Concomitant with this, we observed higher soil C:N under EM trees. Interestingly, this reflected greater N storage in AM-dominated soils rather than greater C storage in EM-dominated soils. These patterns were driven by the storage of SOM in N-rich fractions in AM-dominated soils. Specifically, trees with high litter quality were associated with greater amounts of deep and mineral-associated SOM; pools that are generally considered stable. Our results support the recent contention that high-quality plant inputs should lead to the formation of stable SOM and suggest that the AM-EM framework may provide a way forward for representing litter quality effects on SOM in earth system models.

  5. The effect of municipal sludge compost on the mobility and bioavailability of Cd in a sierozem-wheat system in an arid region northwest of China.

    PubMed

    Liu, Zheng; Yang, Yang; Bai, Ying; Huang, Yu; Nan, Zhongren; Zhao, Chuanyan; Ma, Jianmin; Wang, Houcheng

    2016-10-01

    The effect of sewage sludge on the mobility and the bioavailability of trace metals in plant-soil systems have aroused wide interested and been widely explored. Based on a wheat-cultivating experiment, the effect of municipal sludge compost (MSC) on the mobility and bioavailability of Cd in a soil-wheat system was studied. With the application of MSC, soil organic matter (SOM), total nitrogen (TN), and total phosphorus (TP) in the soil increased significantly, while concentrations of trace metals (Cu, Zn, Ni, Pb, Cd) were below the China's minimum thresholds. The application of MSC could improve wheat growth. The application of MSC at the rate of 0.5 % had no significant effect on the chemical fraction distribution of Cd in soil. In two soil treatments, Cd mainly existed in the labile chemical fractions (exchangeable chemical fraction (EXCF) and carbonate chemical fraction (CABF)). However, the application of MSC could reduce accumulation of Cd by wheat. Cd contents in each part of the MSC-applied wheat were significantly less than that of non-MSC-applied wheat. In the tested soils, the extractable concentrations decreased in the order: EDTA > MgCl 2 ≈ NH 4 OAc > DTPA. There were no significant differences between soil treatments in the amounts of extractable Cd when the extraction was done under neutral conditions, although significant differences were observed when the extraction was done under alkaline conditions. In this study, the DTPA extraction procedure provided a good indication of Cd bioavailability. Our results suggest that, in the short term at least, amending soils with MSC may benefit crop dry matter production while not increasing the risk of human exposure to Cd through consumption of wheat grown on MSC-amended soils.

  6. Treatment of PCR products with exonuclease I and heat-labile alkaline phosphatase improves the visibility of combined bisulfite restriction analysis

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Watanabe, Kousuke; Emoto, Noriko; Sunohara, Mitsuhiro

    2010-08-27

    Research highlights: {yields} Incubating PCR products at a high temperature causes smears in gel electrophoresis. {yields} Smears interfere with the interpretation of methylation analysis using COBRA. {yields} Treatment with exonuclease I and heat-labile alkaline phosphatase eliminates smears. {yields} The elimination of smears improves the visibility of COBRA. -- Abstract: DNA methylation plays a vital role in the regulation of gene expression. Abnormal promoter hypermethylation is an important mechanism of inactivating tumor suppressor genes in human cancers. Combined bisulfite restriction analysis (COBRA) is a widely used method for identifying the DNA methylation of specific CpG sites. Here, we report that exonucleasemore » I and heat-labile alkaline phosphatase can be used for PCR purification for COBRA, improving the visibility of gel electrophoresis after restriction digestion. This improvement is observed when restriction digestion is performed at a high temperature, such as 60 {sup o}C or 65 {sup o}C, with BstUI and TaqI, respectively. This simple method can be applied instead of DNA purification using spin columns or phenol/chloroform extraction. It can also be applied to other situations when PCR products are digested by thermophile-derived restriction enzymes, such as PCR restriction fragment length polymorphism (RFLP) analysis.« less

  7. Soil texture analysis revisited: Removal of organic matter matters more than ever

    PubMed Central

    Schjønning, Per; Watts, Christopher W.; Christensen, Bent T.; Munkholm, Lars J.

    2017-01-01

    Exact estimates of soil clay (<2 μm) and silt (2–20 μm) contents are crucial as these size fractions impact key soil functions, and as pedotransfer concepts based on clay and silt contents are becoming increasingly abundant. We examined the effect of removing soil organic matter (SOM) by H2O2 before soil dispersion and determination of clay and silt. Soil samples with gradients in SOM were retrieved from three long-term field experiments each with uniform soil mineralogy and texture. For soils with less than 2 g C 100 g-1 minerals, clay estimates were little affected by SOM. Above this threshold, underestimation of clay increased dramatically with increasing SOM content. Silt contents were systematically overestimated when SOM was not removed; no lower SOM threshold was found for silt, but the overestimation was more pronounced for finer textured soils. When exact estimates of soil particles <20 μm are needed, SOM should always be removed before soil dispersion. PMID:28542416

  8. Soil texture analysis revisited: Removal of organic matter matters more than ever.

    PubMed

    Jensen, Johannes Lund; Schjønning, Per; Watts, Christopher W; Christensen, Bent T; Munkholm, Lars J

    2017-01-01

    Exact estimates of soil clay (<2 μm) and silt (2-20 μm) contents are crucial as these size fractions impact key soil functions, and as pedotransfer concepts based on clay and silt contents are becoming increasingly abundant. We examined the effect of removing soil organic matter (SOM) by H2O2 before soil dispersion and determination of clay and silt. Soil samples with gradients in SOM were retrieved from three long-term field experiments each with uniform soil mineralogy and texture. For soils with less than 2 g C 100 g-1 minerals, clay estimates were little affected by SOM. Above this threshold, underestimation of clay increased dramatically with increasing SOM content. Silt contents were systematically overestimated when SOM was not removed; no lower SOM threshold was found for silt, but the overestimation was more pronounced for finer textured soils. When exact estimates of soil particles <20 μm are needed, SOM should always be removed before soil dispersion.

  9. The Contribution of Fungal Necromass to Soil Organic Matter Storage

    NASA Astrophysics Data System (ADS)

    Schreiner, K. M.; Blair, N. E.; Buiser, A.; Egerton-Warburton, L.

    2013-12-01

    Saprotrophic fungi have the ability to degrade the three most important biopolymers: cellulose, lignin, and chitin, and therefore are key moderators of a globally important flow of carbon. However, little is known about how that carbon is transformed and/or stored in soil organic matter (SOM). Fungi are also known to produce a variety of biopolymers, such as chitin, melanin, glucan, and mucus-like exudates, and it is likely that these compounds contribute to long-term storage of SOM. In fact, recent work with ectomycorrhizal fungi has shown that a portion of the fungal necromass survives after degradation times of a few weeks to one month (e.g. Drigo et al. 2012, Clemmenson et al. 2013). Until now, the potential contribution of other abundant fungi to recalcitrant SOM has been unknown. Soil incubations have been performed with the common saprotrophic fungus, Fusarium avencum. Approximately 80% of the fungal material was found to turnover over on a time period of days, but 15% of the original biomass was left over at the end of the two-month degradation experiment in both laboratory experiments and in situ in the Dixon Prairie of the Chicago Botanic Garden. In both experiments, degradation was performed by a natural soil microbial consortium. Residual fungal material at each point in the decomposition sequence was analyzed using FTIR and thermochemolysis-GCMS with tetramethyl ammonium hydroxide. The recalcitrant fraction contained carbohydrate and amide-linked functional groups, which is consistent with the chitin or chitosan biopolymer. The breakdown of more labile organic carbon (including proteins and ester-linked groups) appears to occur on a more rapid time scale. Additionally, lipid biomarker analyses revealed a succession of microbial degraders in the degradation process. This is the first time a study of this kind has been performed using a widely distributed saprotrophic fungus, and indicates that these fungi are potentially important in long-term C

  10. Fractional Number Operator and Associated Fractional Diffusion Equations

    NASA Astrophysics Data System (ADS)

    Rguigui, Hafedh

    2018-03-01

    In this paper, we study the fractional number operator as an analog of the finite-dimensional fractional Laplacian. An important relation with the Ornstein-Uhlenbeck process is given. Using a semigroup approach, the solution of the Cauchy problem associated to the fractional number operator is presented. By means of the Mittag-Leffler function and the Laplace transform, we give the solution of the Caputo time fractional diffusion equation and Riemann-Liouville time fractional diffusion equation in infinite dimensions associated to the fractional number operator.

  11. Spectroscopic surrogates of soil organic matter resilience in crusted semiarid Mediterranean ecosystems

    NASA Astrophysics Data System (ADS)

    Miralles Mellado, Isabel; Almendros, Gonzalo; Ortega, Raúl; Cantón, Yolanda; Poveda, Francisco; van Wesemael, Bas

    2016-04-01

    Arid and semiarid ecosystems represent nearly a third of the Earth's total land surface. In these ecosystems, there is a critical balance between C sequestration and biodegradation that could easily be altered due to human disturbance or global change. These ecosystems are widely characterized by the presence of biological soil crusts (BSCs) which play the most important role in the C-cycle in arid and semiarid areas. Consequently, soil organic matter (SOM) characteristics of crusted soil could readily reflect important information on the resilience of SOM in response to any global temperature increase or to inappropriate soil management practices. In this research, representative BSCs and underlying soils were studied in two different semiarid ecosystems in Southern Spain, i.e., Amoladeras (located in Cabo de Gata Natural Park), and El Cautivo (located in Tabernas desert). Chemical fractionation and characterization of the SOM in BSCs and underlying soils were carried out in order to assess not only the total amount of organic C sequestered but mainly the quality of humic-type organic fractions. After isolating the major organic fractions (particulate fraction, humic acid-like (HA), alkali-extracted fulvic acid (FA) and H3PO4-FAs), the macromolecular, HA fraction was purified and studied by derivative visible spectroscopy and resolution-enhanced infrared (IR) spectroscopy. Our results show differences in the structural characteristics of the HA-type substances, interpreted as progressive stages of diagenetic transformation of biomacromolecules. Amoladeras showed higher SOM content, and higher values of HA and HA/FA ratio than El Cautivo, with lower SOM content in BSCs and underlying soils. The latter site accumulates SOM consisting mainly of comparatively less recalcitrant organic fractions with small molecular sizes (H3PO4-FAs and FAs). Moreover HAs in samples from Amoladeras showed higher condensation and aromaticity (higher E4, lower E4/E6 ratio), pointing to

  12. Incorporation of 13C labeled Pinus ponderosa needle and fine root litter into soil organic matter measured by Py-GC/MS-C-IRMS

    NASA Astrophysics Data System (ADS)

    Mambelli, S.; Gleixner, G.; Dawson, T. E.; Bird, J. A.; Torn, M. S.

    2006-12-01

    Developing effective strategies for enhancing C storage in soils requires understanding the influence of plant C quality. In turn, plant C quality impacts the decay continuum between plant residue and humified, stable SOM. This remains one of the least understood aspects of soil biogeochemistry. We investigated the initial phase of incorporation of 13C labeled Pinus ponderosa needle and fine root litter into SOM. The two litter types were placed in separate microcosms in the A horizon in a temperate conifer soil. Curie-point pyrolysis-gas chromatography coupled with on-line mass spectrometry and isotope ratio mass spectrometry (Py-GC/MS-C- IRMS) were used to determine the identity and the 13C enrichment of pyrolysis products (fragments of carbohydrates, lignin, proteins and lipids). We compared the two initial litter types, needles and fine roots, to samples of the bulk soil (A horizon, < 2mm) and soil humin fraction (from chemical solubility) obtained from each microcosm 1.5y after litter addition. Pyrolysis of plant material and SOM produced 56 suitable products for isotopic analysis; of them, 15 occurred in both the litter and bulk soil, 7 in both the litter and the humin fraction and 9 in both bulk soil and the humin fraction. The pyrolysis products found in common in the plant and soil were related either to polysaccharides or were non-specific and could have originated from various precursors. The data suggest that the majority of plant inputs, both from needles or fine roots, were degraded very rapidly. In the humin fraction, the most recalcitrant pool of C in soil, with a measured turnover time of 260y (this soil), only products from the fragmentation of polysaccharides and alkyl-benzene compounds were found. Comparisons of the enrichment normalized by input level suggest little difference between the incorporation of C from needles versus fine roots into SOM. The most enriched fragments in the humin fraction were products from polysaccharides degradation

  13. AggModel: A soil organic matter model with measurable pools for use in incubation studies

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Segoli, Moran; De Gryze, S.; Dou, Fugen

    2013-01-01

    Current soil organic matter (SOM) models are empirical in nature by employing few conceptual SOM pools that have a specific turnover time, but that are not measurable and have no direct relationship with soil structural properties. Most soil particles are held together in aggregates and the number, size and stability of these aggregates significantly affect the size and amount of organic matter contained in these aggregates, and its susceptibility to decomposition. While it has been shown that soil aggregates and their dynamics can be measured directly in the laboratory and in the field, the impact of soil aggregate dynamics onmore » SOM decomposition has not been explicitly incorporated in ecosystem models. Here, we present AggModel, a conceptual and simulation model that integrates soil aggregate and SOM dynamics. In AggModel, we consider unaggregated and microaggregated soil that can exist within or external to macroaggregated soil. Each of the four aggregate size classes contains particulate organic matter and mineral-associated organic matter fractions. We used published data from laboratory incubations to calibrate and validate the biological and environmental effects on the rate of formation and breakdown of macroaggregates and microaggregates, and the organic matter dynamics within these different aggregate fractions. After calibration, AggModel explained more than 70% of the variation in aggregate masses and over 90% of the variation in aggregate-associated carbon. The model estimated the turnover time of macroaggregates as 32 days and 166 days for microaggregates. Sensitivity analysis of AggModel parameterization supported the notion that macroaggregate turnover rate has a strong control over microaggregate masses and, hence, carbon sequestration. In addition to AggModel being a proof-of-concept, the advantage of a model that is based on measurable SOM fractions is that its internal structure and dynamics can be directly calibrated and validated by

  14. Microbial formation of labile organic carbon in Antarctic glacial environments

    USGS Publications Warehouse

    Smith, H.J.; Foster, R.; McKnight, D.M.; Lisle, John T.; Littmann, S.; Kuypers, M.M.M.; Foreman, C.M.

    2017-01-01

    Roughly six petagrams of organic carbon are stored within ice worldwide. This organic carbon is thought to be of old age and highly bioavailable. Along with storage of ancient and new atmospherically deposited organic carbon, microorganisms may contribute substantially to the glacial organic carbon pool. Models of glacial microbial carbon cycling vary from net respiration to net carbon fixation. Supraglacial streams have not been considered in models although they are amongst the largest ecosystems on most glaciers and are inhabited by diverse microbial communities. Here we investigate the biogeochemical sequence of organic carbon production and uptake in an Antarctic supraglacial stream in the McMurdo Dry Valleys using nanometre-scale secondary ion mass spectrometry, fluorescence spectroscopy, stable isotope analysis and incubation experiments. We find that heterotrophic production relies on highly labile organic carbon freshly derived from photosynthetic bacteria rather than legacy organic carbon. Exudates from primary production were utilized by heterotrophs within 24 h, and supported bacterial growth demands. The tight coupling of microbially released organic carbon and rapid uptake by heterotrophs suggests a dynamic local carbon cycle. Moreover, as temperatures increase there is the potential for positive feedback between glacial melt and microbial transformations of organic carbon.

  15. Lignin as a molecular marker of land management impacts on soil C storage and turnover

    NASA Astrophysics Data System (ADS)

    Panettieri, Marco; Rumpel, Cornelia; Dignac, Marie-France; Billiou, Daniel; Chabbi, Abad

    2017-04-01

    Implementation of temporary grassland on cropped lands may be a sustainable option to enhance the carbon storage via the accumulation of soil organic matter (SOM). However, carbon storage is not only a matter of quantity, since higher inputs of labile carbon may stimulate soil microbial and fungal communities and induce the degradation of the formerly stabilized SOM, through the so-called priming effect. Therefore, targeted strategies for carbon storage need to consider the stability of newly added SOM at long term. Recently, soil ecologist emphasized the huge spatial variability of soil structure and properties, and the fact that many ecosystem functions of SOM are only achieved if it decomposes. Thus, more attention must be paid to fluxes of carbon rather than to the quantities accumulated. The present study aims to cope with the listed problems. The aim of the study was to use lignin as a molecular marker of plant C turnover, to assess carbon storage provided by a temporary (ley) grassland system situated at the long term experimental observatory in Lusignan (http://www.soere-acbb.com/). Our conceptual approach included plots under permanent grassland, permanent cropland and bare fallow as controls. A soil fractionation into water stable aggregates has been chosen as a strategy to overcome spatial complexity, and compound specific analyses were focused on lignin phenols within the aggregates. The hypothesis of this work is that lignin turnovers may be influenced by land uses, lignin localisation within soil compartments, the nature of litter input (above vs. belowground biomass), aggregate distribution, and plant cover characteristics (crop vs. grass). To test the hypothesis, cycles of storage and degradation of lignin were studied using compound specific stable isotope probing, taking advantage of in situ labelling provided by the switches from C3 to C4 plants (i.e. grassland to continuous maize) in the experimental area. Lignin monophenols were extracted and

  16. Fermentation and microflora of plaa-som, a thai fermented fish product prepared with different salt concentrations.

    PubMed

    Paludan-Müller, Christine; Madsen, Mette; Sophanodora, Pairat; Gram, Lone; Møller, Peter Lange

    2002-02-25

    Plaa-som is a Thai fermented fish product prepared from snakehead fish, salt, palm syrup and sometimes roasted rice. We studied the effects of different salt concentrations on decrease in pH and on microflora composition during fermentation. Two low-salt batches were prepared, containing 6% and 7% salt (w/w) as well as two high-salt batches, containing 9% and 11% salt. pH decreased rapidly from 6 to 4.5 in low-salt batches, whereas in high-salt batches, a slow or no decrease in pH was found. Lactic acid bacteria (LAB) and yeasts were isolated as the dominant microorganisms during fermentation. LAB counts increased to 10(8)-10(9) cfu g(-1) and yeast counts to 10(7)-5 x 10(7) cfu g(-1) in all batches, except in the 11% salt batch, where counts were 1-2 log lower. Phenotypic tests, ITS-PCR, carbohydrate fermentations and 16S rRNA gene sequencing identified LAB isolates as Pediococcus pentosaceus, Lactobacillus alimentarius/farciminis, Weisella confusa, L. plantarum and Lactococcus garviae. The latter species was only isolated from high-salt batches. Phenotypic characteristics, ITS-PCR and carbohydrate assimilation identified 95% of the yeasts as Zygosaccharomyces rouxii. It is concluded that the fermentation of plaa-som is delayed by a salt-level of 9% due to an inhibition of LAB growth. The growth of Z. rouxii has no influence on the fermentation rate, but may contribute positively to the flavour development of the product.

  17. Soil organic matter as an important contributor to Late Quaternary sediments of the tropical West African continental margin

    NASA Astrophysics Data System (ADS)

    Holtvoeth, Jens; Kolonic, Sadat; Wagner, Thomas

    2005-04-01

    The contribution of soil organic matter (SOM) to continental margins is largely ignored in studies on the carbon budget of marine sediments. Detailed geochemical investigations of late Quaternary sediments (245-0 ka) from the Niger and Congo deep-sea fans, however, reveal that C org/N tot ratios and isotopic signatures of bulk organic matter (δ 13C org) in both fans are essentially determined by the supply of various types of SOM from the river catchments thus providing a fundamentally different interpretation of established proxies in marine sciences. On the Niger fan, increased C org/N tot and δ 13C org (up to -17‰) were driven by generally nitrogen-poor but 13C-enriched terrigenous plant debris and SOM from C 4/C 3 vegetation/Entisol domains (grass- and tree-savannah on young, sandy soils) supplied during arid climate conditions. Opposite, humid climates supported drainage of C 3/C 4 vegetation/Alfisol/Ultisol domains (forest and tree-savannah on older/developed, clay-bearing soils) that resulted in lower C org/N tot and δ 13C org (< -20‰) in the Niger fan record. Sediments from the Congo fan contain a thermally stable organic fraction that is absent on the Niger fan. This distinct organic fraction relates to strongly degraded SOM of old and highly developed, kaolinite-rich ferallitic soils (Oxisols) that cover large areas of the Congo River basin. Reduced supply of this nitrogen-rich and 12C-depleted SOM during arid climates is compensated by an elevated input of marine OM from the high-productive Congo up-welling area. This climate-driven interplay of marine productivity and fluvial SOM supply explains the significantly smaller variability and generally lower values of C org/N tot and δ 13C org for the Congo fan records. This study emphasizes that ignoring the presence of SOM results in a severe underestimation of the terrigenous organic fraction leading to erroneous paleoenvironmental interpretations at least for continental margin records

  18. Thermally labile components of aqueous humor potently induce osteogenic potential in adipose-derived mesenchymal stem cells

    PubMed Central

    Morgan, Joshua T.; Kwon, Heung Sun; Wood, Joshua A.; Borjesson, Dori L.; Tomarev, Stanislav I.; Murphy, Christopher J.; Russell, Paul

    2015-01-01

    Adipose-derived mesenchymal stem cells (ASCs) hold promise for use in cell-based therapies. Their intrinsic anti-inflammatory properties are potentially useful for treatments of inflammatory conditions such as uveitis, while their ability to differentiate along multiple cell lineages suggests use in regenerating damaged or degenerated tissue. However, how ASCs will respond to the intraocular environment is poorly studied. We have recently reported that aqueous humor (AH), the fluid that nourishes the anterior segment of the eye, potently increases alkaline phosphatase (ALP) activity of ASCs, indicating osteogenic differentiation. Here, we expand on our previous findings to better define the nature of this response. To this end, we cultured ASCs in the presence of 0, 5, 10, and 20% AH and assayed them for ALP activity. We found ALP activity correlates with increasing AH concentrations from 5 to 20%, and that longer treatments result in increased ALP activity. By using serum free media and pretreating AH with dextran-coated charcoal, we found that serum and charcoal-adsorbable AH components augment but are not required for this response. Further, by heat-treating the AH, we established that thermally labile components are required for the osteogenic response. Finally, we showed myocilin, a protein present in AH, could induce ALP activity in ASCs. However, this was to a lesser extent than untreated 5% AH, and myocilin could only partially rescue the effect after heat treatment, documenting there were additional thermally labile constituents of AH involved in the osteogenic response. Our work adds to the understanding of the induction of ALP in ASCs following exposure to AH, providing important insight in how ASCs will be influenced by the ocular environment. In conclusion, increased osteogenic potential upon exposure to AH represents a potential challenge to developing ASC cell-based therapies directed at the eye. PMID:25720657

  19. Carbon storage in soil: how different land uses affect particulate organic matter composition. A molecular approach using nuclear magnetic resonance spectroscopy.

    NASA Astrophysics Data System (ADS)

    Panettieri, Marco; Courtier-Murias, Denis; Rumpel, Cornelia; Dignac, Marie-France; Doumert, Bertrand; Chabbi, Abad

    2017-04-01

    The future soil carbon stocks in a climate change scenario is being closely monitored. However, the huge edaphoclimatic variability impedes to disclose the mechanisms which underlie the cycle of accumulation/mineralization of soil organic matter (SOM). Soil environment could be described as a complex three phases matrix in which gases, liquids, and solids are not uniformly mixed, and in which microbes, fungi, vegetal residues, and roots are continuously interacting with the soil matrix and with each other. Molecular analyses on soil samples are crucial to estimate how stable those pools are and to predict which practices may accumulate larger C stocks. However, the study of land use impact through molecular characterization of a complex mixture like SOM is a challenge that requires a multidisciplinary approach. The present study applied a combination of soil physical fractionation (separation by density of the particulate organic matter (POM) within water stable aggregate fractions) followed by nuclear magnetic resonance (NMR) spectroscopy as a way to overcome spatial variability and to quantify the changes in the composition of SOM induced by land-use changes. The objective of the study was to assess, at a molecular level, the impact of different land managements, i.e. the introduction of temporary (ley) grassland into cropping cycles, on the chemical composition of SOM. Soil samples were collected at the long-term experimental observatory in Lusignan (http://www.soere-acbb.com/), in which control plots under permanent grassland, permanent cropland, and bare fallow are part of the experiment. To improve the signal-to-noise ratio (especially in the aromatic-C region), samples were analyzed using a ramped cross polarization-single pulse/magic angle spinning (CPSP/MAS) experiment. Peak integrals of different spectral regions (indicating different compound classes) were compared between treatments and two different molecular mixing models, calibrated against standard

  20. Molecular profiling of permafrost soil organic carbon composition and degradation

    NASA Astrophysics Data System (ADS)

    Gu, B.; Mann, B.

    2014-12-01

    Microbial degradation of soil organic matter (SOM) is a key process for terrestrial carbon (C) cycling, though the dynamics of these transformations remain unclear at the molecular level. This study reports the application of ultrahigh resolution Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) to profile molecular components of Arctic SOM collected from the surface water and the mineral horizon of a low-centered polygon soil at Barrow Environmental Observatory (BEO), Barrow, Alaska. Soil samples were subjected to anaerobic warming experiments for a period of 40 days, and the SOM was extracted before and after the incubation to determine the components of organic C that were degraded over the course of the study. A CHO index based on molecular composition data was utilized to codify SOM components according to their observed degradation potential. Carbohydrate- and lignin-like compounds in the water-soluble fraction (WSF) demonstrated a high degradation potential, while structures with similar stoichiometries in the base-soluble fraction (BSF) were not readily degraded. The WSF of SOM also shifted to a wider range of measured molecular masses including an increased prevalence of larger compounds, while the size distribution of compounds in the BSF changed little over the same period. Additionally, the molecular profiling data indicated an apparently ordered incorporation of organic nitrogen in the BSF immobilized as primary and secondary amines, possibly as components of N-heterocycles, which may provide insight into nitrogen immobilization or mobilization processes in SOM. Our study represents an important step forward for studying Arctic SOM with improved understanding of the molecular properties of soil organic C and the ability to represent SOM in climate models that will predict the impact of climate change on soil C and nutrient cycling.

  1. Effect of soil organic matter on antimony bioavailability after the remediation process.

    PubMed

    Nakamaru, Yasuo Mitsui; Martín Peinado, Francisco José

    2017-09-01

    We evaluated the long-term (18 year) and short-term (4 weeks) changes of Sb in contaminated soil with SOM increase under remediation process. In the Aznalcóllar mine accident (1998) contaminated area, the remediation measurement implemented the Guadiamar Green Corridor, where residual pollution is still detected. Soils of the re-vegetated area (O2) with high pH and high SOM content, moderately re-vegetated area (O1) and unvegetated area (C) were sampled. Soil pH, CEC, SOM amount and soil Sb forms were evaluated. Soil Sb was measured as total, soluble, exchangeable, EDTA extractable, acid oxalate extractable, and pyro-phosphate extractable fractions. Further, the short-term effect of artificial organic matter addition was also evaluated with incubation study by adding compost to the sampled soil from C, O1 and O2 areas. After 4 weeks of incubation, soil chemical properties and Sb forms were evaluated. In re-vegetated area (O2), soil total Sb was two times lower than in unvegetated area (C); however, soluble, exchangeable, and EDTA extractable Sb were 2-8 times higher. The mobile/bioavailable Sb increase was also observed after 4 weeks of incubation with the addition of compost. Soluble, exchangeable, and EDTA extractable Sb was increased 2-4 times by compost addition. By the linear regression analysis, the significantly related factors for soluble, exchangeable, and EDTA extractable Sb values were pH, CEC, and SOM, respectively. Soluble Sb increase was mainly related to pH rise. Exchangeable Sb should be bound by SOM-metal complex and increased with CEC. EDTA extractable fraction should be increased with increase of SOM as SOM-Fe associated Sb complex. From these results, it was shown that increase of SOM under natural conditions or application of organic amendment under remediation process should increase availability of Sb to plants. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Argon direct analysis in real time mass spectrometry in conjunction with makeup solvents: a method for analysis of labile compounds.

    PubMed

    Yang, Hongmei; Wan, Debin; Song, Fengrui; Liu, Zhiqiang; Liu, Shuying

    2013-02-05

    Helium direct analysis in real time (He-DART) mass spectrometry (MS) analysis of labile compounds usually tends to be challenging because of the occurrence of prominent fragmentation, which obscures the assigning of an ion to an independent species or merely a fragment in a mixture. In the present work, argon DART (Ar-DART) MS in conjunction with makeup solvents has been demonstrated to analyze a variety of labile compounds including nucleosides, alkaloids, glucose, and other small molecules. The results presented here confirm that Ar-DART can generate significantly less energetic ions than conventional He-DART and is able to produce the intact molecular ions with little or no fragmentation in both positive and negative ion modes. Adding a makeup solvent (absolute ethyl alcohol, methanol, fluorobenzene, or acetone) to the argon gas stream at the exit of the DART ion source can result in 1-2 orders of magnitude increase in detection signals. The sensitivity attainable by Ar-DART was found to be comparable to that by He-DART. The investigation of influence of solvents improves our understanding of the fundamental desorption and ionization processes in DART. The practical application of this rapid and high throughput method is demonstrated by the successful analysis of a natural product (Crude Kusnezoff Monkshood) extract, demonstrating the great potential in mixture research.

  3. A new class of high-contrast Fe(II) selective fluorescent probes based on spirocyclized scaffolds for visualization of intracellular labile iron delivered by transferrin.

    PubMed

    Niwa, Masato; Hirayama, Tasuku; Okuda, Kensuke; Nagasawa, Hideko

    2014-09-14

    Iron is an essential metal nutrient that plays physiologically and pathologically important roles in biological systems. However, studies on the trafficking, storage, and functions of iron itself in living samples have remained challenging due to the lack of efficient methods for monitoring labile intracellular iron. Herein, we report a new class of Fe(2+)-selective fluorescent probes based on the spirocyclization of hydroxymethylrhodamine and hydroxymethylrhodol scaffolds controlled by using our recently established N-oxide chemistry as a Fe(2+)-selective switch of fluorescence response. By suppressing the background signal, the spirocyclization strategy improved the turn-on rate dramatically, and reducing the size of the substituents of the N-oxide group enhanced the reaction rate against Fe(2+), compared with the first generation N-oxide based Fe(2+) probe, RhoNox-1. These new probes showed significant enhancements in the fluorescence signal against not only the exogenously loaded Fe(2+) but also the endogenous Fe(2+) levels. Furthermore, we succeeded in monitoring the accumulation of labile iron in the lysosome induced by transferrin-mediated endocytosis with a turn-on fluorescence response.

  4. Zinc fractionation in contaminated soils by sequential and single extractions: influence of soil properties and zinc content.

    PubMed

    Voegelin, Andreas; Tokpa, Gerome; Jacquat, Olivier; Barmettler, Kurt; Kretzschmar, Ruben

    2008-01-01

    We studied the fractionation of zinc (Zn) in 49 contaminated soils as influenced by Zn content and soil properties using a seven-step sequential extraction procedure (F1: NH4NO3; F2: NH4-acetate, pH 6; F3: NH3OHCl, pH 6; F4: NH4-EDTA, pH 4.6; F5: NH4-oxalate, pH 3; F6: NH4-oxalate/ascorbic acid, pH 3; F7: residual). The soils had developed from different geologic materials and covered a wide range in soil pH (4.0-7.3), organic C content (9.3-102 g kg(-1)), and clay content (38-451 g kg(-1)). Input of aqueous Zn with runoff water from electricity towers during 26 to 74 yr resulted in total soil Zn contents of 3.8 to 460 mmol kg(-1). In acidic soils (n = 24; pH <6.0), Zn was mainly found in the mobile fraction (F1) and the last two fractions (F6 and F7). In neutral soils (n = 25; pH > or =6.0), most Zn was extracted in the mobilizable fraction (F2) and the intermediate fractions (F4 and F5). The extractability of Zn increased with increasing Zn contamination of the soils. The sum of mobile (F1) and mobilizable (F2) Zn was independent of soil pH, the ratio of Zn in F1 over F1+F2 plotted against soil pH, exhibited the typical shape of a pH sorption edge and markedly increased from pH 6 to pH 5, reflecting the increasing lability of mobilizable Zn with decreasing soil pH. In conclusion, the extractability of Zn from soils contaminated with aqueous Zn after decades of aging under field conditions systematically varied with soil pH and Zn content. The same trends are expected to apply to aqueous Zn released from decomposing Zn-bearing contaminants, such as sewage sludge or smelter slag. The systematic trends in Zn fractionation with varying soil pH and Zn content indicate the paramount effect of these two factors on molecular scale Zn speciation. Further research is required to characterize the link between the fractionation and speciation of Zn and to determine how Zn loading and soil physicochemical properties affect Zn speciation in soils.

  5. Distinctive soil organic matter composition in a precipitation contrast of a Hawaiian Andosol

    NASA Astrophysics Data System (ADS)

    Inagaki, Thiago M.; Grant, Katherine; Mueller, Carsten W.; Lehmann, Johannes; Derry, Louis A.; Kögel-Knabner, Ingrid

    2017-04-01

    Volcanic Andosols are recognized by their strong capacity to accumulate soil organic carbon (SOC), and for presenting a singular aggregation pattern. However, the factors which govern their SOC storage and aggregation hierarchy are still poorly understood. In addition, many methods of fractionation are proposed for these soils and there is no consensus regarding the ideal methodology. In this way, the objective of this study was to evaluate the soil organic matter (SOM) properties of an Andosol through CN analysis, NMR spectroscopy, and Scanning electron microscopy (SEM) + NanoSIMS analysis in the soil mineral fraction testing different dispersion treatments. We tested three Andosol samples from two different sites of the Kohala region - Hawaii with contrasting precipitation levels. The samples tested were as follow: 1784-60 (altitude-average depth cm) and 1784-80: subsoil samples from 0.5-0.7 and 0.7-0.9 m depth, respectively, with annual mean precipitation of 1784 mm and altitude of 1194 m; and 2286-50: subsoil sample from 45-60 cm depth, with annual mean precipitation of 2286 mm and altitude of 1501 m. We performed the SOM fractionation using ultrasonic dispersion at 1500 J ml-1, wet sieving and sedimentation. Five fractions were obtained as follow: free particulate organic matter (fPOM), 4000-63, 63-20, 20-2 and < 2µm, respectively. We made the fractionation procedure in two sets: with and without a pre-dispersion treatment with Na saturation to test its influence on the SOM characterization. The C content and distribution was analyzed in all the fractions, and the NMR and SEM+NanoSIMS analysis were carried out in the fraction <2µm of 1784-60 and 1784-80 samples. Overall, the pre-dispersion treatment with NaCL saturation did not influence the C content and its distribution, as well as the SOM composition observed by NMR and NanoSIMS analysis. More than 90% of the soil mass was concentrated in the fractions below 20 µm (i.e. 20-2 and <2µm). The <2µm

  6. Effects of catecholamines on rat myocardial metabolism. I. Influence of catecholamines on energy-rich nucleotides and phosphorylated fraction contents.

    PubMed

    Merouze, P; Gaudemer, Y

    1975-01-01

    1. The influence of catecholamines (adrenaline and noradrenaline) on energy metabolism of the rat myocardium has been studied by incubating slices of this tissue with these hormones and by following the levels of the different phosphorylated fractions and adenylic nucleotides. 2. Similar effects are obtained with both hormones, adrenaline being more effective. 3. Catecholamines decrease significantly the total amount of phosphate while Pi content increases during the first 10 minutes of incubation; labile and residual phosphate contents increase at the beginning of incubation and decrease to the initial values afterwards. 4. ATP and ADP levels decrease significantly with both hormones; however, the effect of noradrenalin on the ATP level needs a longer time of incubation. The ATP/ADP ratios decrease after 5 minutes incubation and the total adenylic nucleotide content is severely decreased (35 per cent with adrenalin, after 20 minutes incubation). 5. Similar results have been obtained with other tissues; these results can explain the decrease of aerobic metabolism we observed under the same conditions.

  7. Size, speciation and lability of NOM-metal complexes in hyperalkaline cave dripwater

    NASA Astrophysics Data System (ADS)

    Hartland, Adam; Fairchild, Ian J.; Lead, Jamie R.; Zhang, Hao; Baalousha, Mohammed

    2011-12-01

    Transport of trace metals by natural organic matter (NOM) is potentially an important vector for trace metal incorporation in secondary cave precipitates [speleothems], yet little is known about the size distribution, speciation and metal binding properties of NOM in cave dripwaters. A hyperalkaline cave environment (ca. pH 11) was selected to provide information on colloid-metal interactions in cave waters, and to address the lack of high-pH data in natural systems in general. Colloidal (1 nm-1 μm) NOM in hyperalkaline cave dripwater from Poole's Cavern, UK, was characterised by flow field-flow fractionation (FlFFF) coupled to UV and fluorescence detectors and transmission electron microscopy (TEM) coupled to X-ray energy-dispersive spectroscopy (X-EDS); trace-metal lability was examined by diffusive gradients in thin films (DGT). Colloidal aggregates and small particulates (>1 μm) imaged by TEM were morphologically heterogeneous with qualitative elemental compositions (X-EDS spectra; n = 41) consistent with NOM aggregates containing aluminosilicates, and iron and titanium oxides. Globular organic colloids, with diameters between ca. 1 and 10 nm were the most numerous colloidal class and exhibited high UV-absorbance (254 nm) and fluorescence intensity (320:400 nm excitation: emission) in optical regions characteristic of humic-like compounds. Metal binding with humic substances was modelled using the WHAM 6.1 (model VI) and visual MINTEQ 3.0 (NICA-Donnan) speciation codes. At pH 11, both models predicted dominant humic binding of Cu (ca. 100%) and minimal binding of Ni and Co (ca. <1-7%). A DGT depletion experiment (7 days duration) with the hyperalkaline dripwater showed that the available proportion of each metal was much lower than its total concentration. Metal availability for DGT in the initial stages (24 h) was consistent with weaker binding of alkaline earth metals by humic substances (Ba > Sr > V > Cu > Ni > Co), compared to the transition metals

  8. Changes in soil organic carbon fractions after remediation of a coastal floodplain soil.

    PubMed

    Wong, V N L; McNaughton, C; Pearson, A

    2016-03-01

    Coastal floodplain soils and wetland sediments can store large amounts of soil organic carbon (SOC). These environments are also commonly underlain by sulfidic sediments which can oxidise to form coastal acid sulfate soils (CASS) and contain high concentrations of acidity and trace metals. CASS are found on every continent globally except Antarctica. When sulfidic sediments are oxidised, scalds can form, which are large bare patches without vegetation. However, SOC stocks and fractions have not been quantified in these coastal floodplain environments. We studied the changes in soil geochemistry and SOC stocks and fractions three years after remediation of a CASS scald. Remediation treatments included raising water levels, and addition of either lime (LO) or lime and mulch (LM) relative to a control (C) site. We found SOC concentrations in the remediated sites (LO and LM) were more than double than that found at site C, reflected in the higher SOC stocks to a depth of 1.6 m (426 Mg C/ha, 478 Mg C/ha and 473 Mg C/ha at sites C, LO and LM, respectively). The particulate organic C (POC) fraction was higher at sites LO and LM due to increased vegetation and biomass inputs, compared to site C. Reformation of acid volatile sulfide (AVS) occurred throughout the profile at site LM, whereas only limited AVS reformation occurred at sites LO and C. Higher AVS at site LM may be linked to the additional source of organic matter provided by the mulch. POC can also potentially contribute to decreasing acidity as a labile SOC source for Fe(3+) and SO4(2-) reduction. Therefore, coastal floodplains and wetlands are a large store of SOC and can potentially increase SOC following remediation due to i) reduced decomposition rates with higher water levels and waterlogging, and ii) high C inputs due to rapid revegetation of scalded areas and high rates of biomass production. These results highlight the importance of maintaining vegetation cover in coastal floodplains and wetlands for

  9. Speciation and Lability of Ag-, AgCl- and Ag2S-Nanoparticles in Soil Determined by X-ray Absorption Spectroscopy and Diffusive Gradients in Thin Films

    EPA Science Inventory

    Long-term speciation and lability of silver (Ag-), silver chloride (AgCl-) and silver sulfide nanoparticles (Ag2S-NPs) in soil were studied by X-ray absorption spectroscopy (XAS), and newly developed "nano" Diffusive Gradients in Thin Films (DGT) devices. These nano-D...

  10. ON THE NATURE OF THE HEAT-LABILE SUBSTANCE ("V") REQUIRED FOR THE GROWTH OF THE BACILLUS OF PFEIFFER

    PubMed Central

    Thjötta, Th.

    1924-01-01

    It has been shown in several experiments that the heat-labile, growth-promoting factor "V" found in the blood of animals does not diminish or disappear when the animals are kept on vitamine B-free diet. The titer of the "V" substance present in the blood of normal animals is undiminished in animals showing severe signs of polyneuritis even to the time of their death. The antipolyneuritic factor of vegetable food, designated as vitamine B, is found to be considerably more heat-stable than is the "V" substance concerned in promoting the growth of Pfeiffer's bacillus. PMID:19868950

  11. The importance of humin in soil characterisation: A study on Amazonian soils using different fluorescence techniques.

    PubMed

    Tadini, Amanda Maria; Nicolodelli, Gustavo; Mounier, Stephane; Montes, Célia Regina; Milori, Débora Marcondes Bastos Pereira

    2015-12-15

    Soil organic matter (SOM) is a complex mixture of molecules with different physicochemical properties, with humic substances (HS) being the main component as it represents around 20-50% of SOM structure. Soil of the Amazon region is considered one of the larger carbon pools of the world; thus, studies of the humic fractions are important for understanding the dynamics of organic matter (OM) in these soils. The aim of this study was to use laser-induced fluorescence spectroscopy (LIFS) and a combination of excitation-emission matrix (EEM) fluorescence with Parallel Factor Analysis (CP/PARAFAC) to assess the characteristics of humin (HU) extracted from Amazonian soils. The results obtained using LIFS showed that there was an increasing gradient of humification degree with depth, the deeper horizon presenting a higher amount of aromatic groups in the structure of HU. From the EEM, the contribution of two fluorophores with similar behaviour in the structures of HU and whole soil was assessed. Additionally, the results showed that the HU fraction might represent a larger fraction of SOM than previously thought: about 80-93% of some Amazon soils. Therefore, HU is an important humic fraction, thus indicating its role in environmental analysis, mainly in soil analysis. Copyright © 2015 Elsevier B.V. All rights reserved.

  12. Combined effects of hydrographic structure and iron and copper availability on the phytoplankton growth in Terra Nova Bay Polynya (Ross Sea, Antarctica)

    NASA Astrophysics Data System (ADS)

    Rivaro, Paola; Luisa Abelmoschi, Maria; Grotti, Marco; Ianni, Carmela; Magi, Emanuele; Margiotta, Francesca; Massolo, Serena; Saggiomo, Vincenzo

    2012-04-01

    Surface water (<100 m) samples were collected from the Terra Nova Bay polynya region of the Ross Sea (Antarctica) in January 2006, with the aim of evaluating the individual and combined effects of hydrographic structure, iron and copper concentration and availability on the phytoplankton growth. The measurements were conducted within the framework of the Climatic Long Term Interaction for the Mass-balance in Antarctica (CLIMA) Project of the Programma Nazionale di Ricerca in Antartide activities. Dissolved oxygen, nutrients, phytoplankton pigments and concentration and complexation of dissolved trace metals were determined. Experimental data were elaborated by Principal Component Analysis (PCA). As a result of solar heating and freshwater inputs from melting sea-ice, the water column was strongly stratified with an Upper Mixed Layer 4-16 m deep. The integrated Chl a in the layer 0-100 m ranged from 60 mg m-2 to 235 mg m-2, with a mean value of 138 mg m-2. The pigment analysis showed that diatoms dominated the phytoplankton assemblage. Major nutrients were generally high, with the lowest concentration at the surface and they were never fully depleted. The Si:N drawdown ratio was close to the expected value of 1 for Fe-replete diatoms. We evaluated both the total and the labile dissolved fraction of Fe and Cu. The labile fraction was operationally defined by employing the chelating resin Chelex-100, which retains free and loosely bound trace metal species. The total dissolved Fe ranged from 0.48 to 3.02 nM, while the total dissolved Cu from 3.68 to 6.84 nM. The dissolved labile Fe ranged from below the detection limit (0.15 nM) to 1.22 nM, and the dissolved labile Cu from 0.31 to 1.59 nM, respectively. The labile fractions measured at 20 m were significantly lower than values in 40-100 m samples. As two stations were re-sampled 5 days later, we evaluated the short-term variability of the physical and biogeochemical properties. In particular, in a re-sampled station

  13. Persistence of soil organic matter in eroding versus depositional landform positions

    USGS Publications Warehouse

    Berhe, Asmeret Asefaw; Harden, Jennifer W.; Torn, Margaret S.; Kleber, Markus; Burton, Sarah D.; Harte, John

    2012-01-01

    Soil organic matter (SOM) processes in dynamic landscapes are strongly influenced by soil erosion and sedimentation. We determined the contribution of physical isolation of organic matter (OM) inside aggregates, chemical interaction of OM with soil minerals, and molecular structure of SOM in controlling storage and persistence of SOM in different types of eroding and depositional landform positions. By combining density fractionation with elemental and spectroscopic analyses, we showed that SOM in depositional settings is less transformed and better preserved than SOM in eroding landform positions. However, which environmental factors exert primary control on storage and persistence of SOM depended on the nature of the landform position considered. In an annual grassland watershed, protection of SOM by physical isolation inside aggregates and chemical association of organic matter (complexation) with soil minerals, as assessed by correlation with radiocarbon concentration, were more effective in the poorly drained, lowest-lying depositional landform positions, compared to well-drained landform positions in the upper parts of the watershed. Results of this study demonstrated that processes of soil erosion and deposition are important mechanisms of long-term OM stabilization.

  14. Characterization of extractable soil organic matter pools from African Dark Earths (AfDE): A case study in historical biochar and organic waste amendments

    NASA Astrophysics Data System (ADS)

    Fujiu, Manna; Plante, Alain; Ohno, Tsutomu; Solomon, Dawit; Lehmann, Johannes; Fraser, James; Leach, Melissa; Fairhead, James

    2014-05-01

    Anthropogenic Dark Earths are soils generated through long-term human inputs of organic and pyrogenic materials. These soils were originally discovered in the Amazon, and have since been found in Australia and in this case in Africa. African Dark Earths (AfDE) are black, highly fertile and carbon-rich soils that were formed from the original highly-weathered infertile yellowish to red Oxisols and Ultisols through an extant but hitherto overlooked climate-smart sustainable soil management system that has long been an important feature of the indigenous West African agricultural repertoire. Studies have demonstrated that ADE soils in general have significantly different organic matter properties compared to adjacent non-DE soils, largely attributable to the presence of high concentrations of ash-derived carbon. Quantification and characterization of bulk soil organic matter of several (n=11) AfDE and non-AfDE pairs of surface (0-15 cm) soils using thermal analysis techniques (TG-DSC-EGA) confirmed substantial differences in SOM composition and the presence of pyrogenic C. Such pyrogenic organic matter is generally considered recalcitrant or relatively stable, but the goal of the current study was to characterize the presumably labile, more rapidly cycling, pools of C in AfDEs through the characterization of hot water- and pyrophosphate-extractable fractions, referred to as HWEOC and PyroC respectively. Extracts were analyzed for carbon content, as well as composition using fluorescence (EEM/PARAFAC) and high resolution mass spectrometry (FTICR-MS). The amount of extractable C as a proportion of total soil C was relatively low: less than ~0.8% for HWEOC and 2.8% for PyroC. The proportion of HWEOC did not differ (P = 0.18, paired t-test) between the AfDE and the non-AfDE soils, while the proportions of PyroC were significantly larger (P = 0.001) in the AfDE soils compared to the non-AfDE soils. Preliminary analysis of the EEM/PARAFAC data suggests that AfDE samples had

  15. Repeated applications of compost and manure mainly affect the size and chemical nature of particulate organic matter in a loamy soil after 8 years

    NASA Astrophysics Data System (ADS)

    Peltre, Clement; Dignac, Marie-France; Doublet, Jeremy; Plante, Alain; Houot, Sabine

    2013-04-01

    Land application of exogenous organic matter (EOM) of residual origin can help to maintain or increase soil organic carbon (SOC) stocks. However, it remains necessary to quantify and predict the soil C accumulation and to determine under which form the C accumulates. Changes to the chemical composition of soil organic matter (SOM) after repeated applications of composts and farmyard manure were investigated in a field experiment (Qualiagro experiment, Ile-de-France) after 8 years of applications of green waste and sludge compost (GWS), municipal solid waste compost (MSW), biowaste compost (BIOW) or farmyard manure (FYM). The soil was fractionated into particulate organic matter >50 µm (POM), a heavy fraction >50 µm and a 0-50 µm fraction demineralized with hydrofluoric acid (HF). Repeated EOM applications significantly increased total SOC stocks, the C amount in the POM fraction and to a less extent in the 0-50 µm fraction compared to the reference treatment. Compost applications accumulated C preferentially under the form of coarse organic matter of size >50 µm, whereas the FYM accumulated similar C proportions of size >50 µm and 0-50 µm, which was attributed to the presence in the FYM of a fraction of labile C stimulating microbial activity and producing humified by-products together with a fraction of stabilized C directly alimenting the humified fraction of SOC. Pyrolysis-GC/MS and DRIFT spectroscopy revealed enrichment in lignin in the POM fractions of amended soils with GWS, BIOW and FYM. In the soil receiving MSW compost, the pyrolysate of the POM fraction revealed the presence of plastics originating from the MSW compost. A lower C mineralization during laboratory incubation was found for the POM fractions of amended soils compared with the POM from reference soil. This feature was related to a lower ratio of (furfural+acetic acid) / pyrole pyrolysis products in POM of amended vs. reference plots, indicating a higher degree of recalcitrance.. The POM

  16. Soil Organic Matter Stabilization via Mineral Interactions in Forest Soils with Varying Saturation Frequency

    NASA Astrophysics Data System (ADS)

    Possinger, A. R.; Inagaki, T.; Bailey, S. W.; Kogel-Knabner, I.; Lehmann, J.

    2017-12-01

    Soil carbon (C) interaction with minerals and metals through surface adsorption and co-precipitation processes is important for soil organic C (SOC) stabilization. Co-precipitation (i.e., the incorporation of C as an "impurity" in metal precipitates as they form) may increase the potential quantity of mineral-associated C per unit mineral surface compared to surface adsorption: a potentially important and as yet unaccounted for mechanism of C stabilization in soil. However, chemical, physical, and biological characterization of co-precipitated SOM as such in natural soils is limited, and the relative persistence of co-precipitated C is unknown, particularly under dynamic environmental conditions. To better understand the relationships between SOM stabilization via organometallic co-precipitation and environmental variables, this study compares mineral-SOM characteristics across a forest soil (Spodosol) hydrological gradient with expected differences in co-precipitation of SOM with iron (Fe) and aluminum (Al) due to variable saturation frequency. Soils were collected from a steep, well-drained forest soil transect with low, medium, and high frequency of water table intrusion into surface soils (Hubbard Brook Experimental Forest, Woodstock, NH). Lower saturation frequency soils generally had higher C content, C/Fe, C/Al, and other indicators of co-precipitation interactions resulting from SOM complexation, transport, and precipitation, an important process of Spodosol formation. Preliminary Fe X-ray Absorption Spectroscopic (XAS) characterization of SOM and metal chemistry in low frequency profiles suggest co-precipitation of SOM in the fine fraction (<20 µm). Short-term (10d) aerobic incubation of high and low saturation frequency soils showed greater SOC mineralization per unit soil C for low saturation frequency (i.e., higher co-precipitation) soils; however, increased mineralization may be attributed to non-mineral associated fractions of SOM. Further work to

  17. Interspecific variations in mangrove leaf litter decomposition are related to labile nitrogenous compounds

    NASA Astrophysics Data System (ADS)

    Nordhaus, Inga; Salewski, Tabea; Jennerjahn, Tim C.

    2017-06-01

    Mangrove leaves form a large pool of carbon, nitrogen and energy that is a major driver of element cycles and detrital food webs inside mangrove forests as well as in adjacent coastal waters. However, there are large gaps in knowledge on the transformation pathways and ultimate fate of leaf nitrogen. Therefore, the main objective of this study was to determine the amount and composition of nitrogenous organic matter and possible species-specific differences during the decomposition of mangrove leaf litter. For that purpose a three month decomposition experiment with litterbags was conducted using leaves of Aegiceras corniculatum, Avicennia alba, Ceriops decandra, Rhizophora apiculata, and Sonneratia caseolaris in the mangrove forest of the Segara Anakan Lagoon, Java, Indonesia. Detrital leaves were analyzed for bulk carbon and total nitrogen (N), stable carbon and nitrogen isotope composition (δ13C, δ15N), total hydrolyzable amino acids (THAA) and total hydrolyzable hexosamines (THHA). Decomposition rates (k d-1) were highest and tM50 values (when 50% of the original mass had been degraded) lowest in S. caseolaris (k = 0.0382 d-1; tM50 = 18 days), followed by A. alba, C. decandra, A. corniculatum, and R. apiculata (k = 0.0098 d-1; tM50 = 71 days). The biochemical composition of detrital leaves differed significantly among species and over time. S. caseolaris and A. alba had higher concentrations of N, THAA and THHA and a lower C/N ratio than the other three species. For most of the species concentrations of N, THAA and THHA increased during decomposition. The hexosamine galactosamine, indicative of bacterial cell walls, was first found in leaves after 5-7 days of decomposition and increased afterwards. Our findings suggest an increasing, but species-specific varying, portion of labile nitrogenous OM and total N in decomposing leaves over time that is partly related to the activity of leaf-colonizing bacteria. Despite a higher relative nitrogen content in the

  18. Biochar mineralization and priming effect on SOM decomposition. Results from a field trial in a short rotation coppice in Italy

    NASA Astrophysics Data System (ADS)

    Ventura, Maurizio; Alberti, Giorgio; Panzacchi, Pietro; Delle Vedove, Gemini; Miglietta, Franco; Tonon, Giustino

    2016-04-01

    Biochar application to soil has been proposed as a promising strategy for carbon (C) sequestration and climate change mitigation, helping at the same time to maintain soil fertility. However, most of the knowledge on biochar stability is based on short-term lab incubation experiments, as field studies are scarce. Therefore, little is known about the interactions between biochar and roots and the related effects on biochar stability in field conditions. The present study aimed to assess the stability of biochar, its effect on original soil organic matter (SOM) decomposition, and the effect of plant roots on biochar stability in field conditions in Northern Italy, for a three-year monitoring period within the EuroChar project. The experiment was conducted in a poplar short rotation coppice (SRC). Biochar produced from maize (δ13C = -13.8‰) silage pellets in a gasification plant was applied in a poplar short rotation coppice (SRC) plantation in Northern Italy. Root exclusion subplots were established using the trenching method to measure heterotrophic respiration. Total (Rtot) and heterotrophic (Rh) respiration were measured every 2 hours in control and biochar-treated soil, with a closed dynamic soil respiration system. δ13C of the soil-emited CO2 was periodically measured using the Keeling plot method. The percentage of biochar-derived soil respiration (fB), was calculated using an isotopic mass balance. Results showed that fB varied between 7% and 37% according to the sampling date, and was generally higher in the presence of roots than in trenched plots where the root growth was excluded. Without roots, only the 14% of the carbon originally added with biochar was decomposed. In the presence of roots, this percentage increased to 21%, suggesting a positive priming effect of roots on biochar decomposition. On the other hand, biochar decreased the decomposition of original SOM by about 17%, suggesting a protective effect of biochar on SOM.

  19. Organic carbon export from the Greenland Ice Sheet: sources, sinks and downstream fluxes

    NASA Astrophysics Data System (ADS)

    Wadham, J. L.; Lawson, E.; Tranter, M.; Stibal, M.; Telling, J.; Lis, G. P.; Nienow, P. W.; Anesio, A. M.; Butler, C. E.

    2012-12-01

    Runoff from small glacier systems has been shown to contain dissolved organic carbon (DOC) rich in low molecular weight (LMW), and hence more labile forms, designating glaciers as an important source of carbon for downstream heterotrophic activity. Here we assess glacier surfaces as potential sources of labile DOC to downstream ecosystems, presenting data from a wide range of glacier systems to determine sources and sinks of DOC in glacial and proglacial systems. We subsequently focus upon the Greenland Ice Sheet (GrIS) which is the largest source of glacial runoff at present (400 km3 yr-1), with predicted increases in future decades. We report high fluxes of particulate organic carbon (POC), DOC and LMW labile fractions from a large GrIS catchment during two contrasting melt seasons. POC dominates OC export, is sourced from the ice sheet bed and contains a significant bioreactive component (~10% carbohydrates). The LMW-DOC "labile" fraction derives almost entirely from microbial activity on the ice sheet surface, which is supported by data from glacier systems also presented here. Annual fluxes of DOC, POC and labile components were lower in 2010 than 2009, despite a ~2 fold increase in runoff fluxes in 2010, suggesting production-limited DOC/POC sources. Scaled to the entire ice sheet, combined DOC and POC fluxes are of a similar order of magnitude to other large Arctic river systems and may represent an important source of organic carbon to the North Atlantic, Greenland and Labrador Seas.

  20. Developmental Change and Intraindividual Variability: Relating Cognitive Aging to Cognitive Plasticity, Cardiovascular Lability, and Emotional Diversity

    PubMed Central

    Ram, Nilam; Gerstorf, Denis; Lindenberger, Ulman; Smith, Jacqui

    2010-01-01

    Repeated assessments obtained over years can be used to measure individuals’ developmental change, whereas repeated assessments obtained over a few weeks can be used to measure individuals’ dynamic characteristics. Using data from a burst of measurement embedded in the Berlin Aging Study (BASE: Baltes & Mayer, 1999), we illustrate and examine how long-term changes in cognitive ability are related to short-term changes in cognitive performance, cardiovascular function, and emotional experience. Our findings suggest that “better” cognitive aging over approximately13 years was associated with greater cognitive plasticity, less cardiovascular lability, and less emotional diversity over approximately 2 weeks at age 90 years. The study highlights the potential benefits of multi-time scale longitudinal designs for the study of individual function and development. PMID:21443355