Directed evolution: an approach to engineer enzymes.

PubMed

Kaur, Jasjeet; Sharma, Rohit

2006-01-01

Directed evolution is being used increasingly in industrial and academic laboratories to modify and improve commercially important enzymes. Laboratory evolution is thought to make its biggest contribution in explorations of non-natural functions, by allowing us to distinguish the properties nurtured by evolution. In this review we report the significant advances achieved with respect to the methods of biocatalyst improvement and some critical properties and applications of the modified enzymes. The application of directed evolution has been elaborately demonstrated for protein solubility, stability and catalytic efficiency. Modification of certain enzymes for their application in enantioselective catalysis has also been elucidated. By providing a simple and reliable route to enzyme improvement, directed evolution has emerged as a key technology for enzyme engineering and biocatalysis.

Clay Caterpillars: A Tool for Ecology & Evolution Laboratories

ERIC Educational Resources Information Center

Barber, Nicholas A.

2012-01-01

I present a framework for ecology and evolution laboratory exercises using artificial caterpillars made from modeling clay. Students generate and test hypotheses about predation rates on caterpillars that differ in appearance or "behavior" to understand how natural selection by predators shapes distribution and physical characteristics of…

Language evolution in the laboratory.

PubMed

Scott-Phillips, Thomas C; Kirby, Simon

2010-09-01

The historical origins of natural language cannot be observed directly. We can, however, study systems that support language and we can also develop models that explore the plausibility of different hypotheses about how language emerged. More recently, evolutionary linguists have begun to conduct language evolution experiments in the laboratory, where the emergence of new languages used by human participants can be observed directly. This enables researchers to study both the cognitive capacities necessary for language and the ways in which languages themselves emerge. One theme that runs through this work is how individual-level behaviours result in population-level linguistic phenomena. A central challenge for the future will be to explore how different forms of information transmission affect this process. 2010 Elsevier Ltd. All rights reserved.

The stopped-drop method: a novel setup for containment-free and time-resolved measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schiener, Andreas; Seifert, Soenke; Magerl, Andreas

2016-03-01

A novel setup for containment-free time-resolved experiments at a free-hanging drop is reported. Within a dead-time of 100 ms a drop of mixed reactant solutions is formed and the time evolution of a reaction can be followed from thereon by various techniques. As an example, a small-angle X-ray scattering study on the formation mechanism of EDTA-stabilized CdS both at a synchrotron and a laboratory X-ray source is presented here. While the evolution can be followed with one drop only at a synchrotron source, a stroboscopic mode with many drops is preferable for the laboratory source.

Evolution of organic molecules under Mars-like UV radiation conditions in space and laboratory

NASA Astrophysics Data System (ADS)

Rouquette, L.; Stalport, F.; Cottin, H.; Coll, P.; Szopa, C.; Saiagh, K.; Poch, O.; Khalaf, D.; Chaput, D.; Grira, K.; Dequaire, T.

2017-09-01

The detection and identification of organic molecules at Mars are of prime importance, as some of these molecules are life precursors and components. While in situ planetary missions are searching for them, it is essential to understand how organic molecules evolve and are preserved at the surface of Mars. Indeed the harsh conditions of the environment of Mars such as ultraviolet (UV) radiation or oxidative processes could explain the low abundance and diversity of organic molecules detected by now [1]. In order to get a better understanding of the evolution of organic matter at the surface of Mars, we exposed organic molecules under a Mars-like UV radiation environment. Similar organic samples were exposed to the Sun radiation, outside the International Space Station (ISS), and under a UV lamp (martian pressure and temperature conditions) in the laboratory. In both experiments, organic molecules tend to photodegrade under Mars-like UV radiation. Minerals, depending on their nature, can protect or accelerate the degradation of organic molecules. For some molecules, new products, possibly photoresistant, seem to be produced. Finally, experimenting in space allow us to get close to in situ conditions and to validate our laboratory experiment while the laboratory experiment is essential to study the evolution of a large amount and diversity of organic molecules.

Laboratory specimens and genetic privacy: evolution of legal theory.

PubMed

Lewis, Michelle Huckaby

2013-03-01

Although laboratory specimens are an important resource for biomedical research, controversy has arisen when research has been conducted without the knowledge or consent of the individuals who were the source of the specimens. This paper summarizes the most important litigation regarding the research use of laboratory specimens and traces the evolution of legal theory from property claims to claims related to genetic privacy interests. © 2013 American Society of Law, Medicine & Ethics, Inc.

A Novel Laboratory Activity for Teaching about the Evolution of Multicellularity

ERIC Educational Resources Information Center

Ratcliff, William C.; Raney, Allison; Westreich, Sam; Cotner, Sehoya

2014-01-01

The evolution of complexity remains one of the most challenging topics in biology to teach effectively. We present a novel laboratory activity, modeled on a recent experimental breakthrough, in which students experimentally evolve simple multicellularity using single-celled yeast ("Saccharomyces cerevisiae"). By simply selecting for…

Natural history collections as windows on evolutionary processes.

PubMed

Holmes, Michael W; Hammond, Talisin T; Wogan, Guinevere O U; Walsh, Rachel E; LaBarbera, Katie; Wommack, Elizabeth A; Martins, Felipe M; Crawford, Jeremy C; Mack, Katya L; Bloch, Luke M; Nachman, Michael W

2016-02-01

Natural history collections provide an immense record of biodiversity on Earth. These repositories have traditionally been used to address fundamental questions in biogeography, systematics and conservation. However, they also hold the potential for studying evolution directly. While some of the best direct observations of evolution have come from long-term field studies or from experimental studies in the laboratory, natural history collections are providing new insights into evolutionary change in natural populations. By comparing phenotypic and genotypic changes in populations through time, natural history collections provide a window into evolutionary processes. Recent studies utilizing this approach have revealed some dramatic instances of phenotypic change over short timescales in response to presumably strong selective pressures. In some instances, evolutionary change can be paired with environmental change, providing a context for potential selective forces. Moreover, in a few cases, the genetic basis of phenotypic change is well understood, allowing for insight into adaptive change at multiple levels. These kinds of studies open the door to a wide range of previously intractable questions by enabling the study of evolution through time, analogous to experimental studies in the laboratory, but amenable to a diversity of species over longer timescales in natural populations. © 2016 John Wiley & Sons Ltd.

Trends and anomalies in gas evolution from coal samples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vorres, K.S.

1993-09-01

As part of the stability studies on these sealed samples a number of the samples were given to the Analytical Chemistry Laboratory at ANL for periodic gas analysis. 1. Higher rank coals evolve methane, and lower rank coals evolve carbon dioxide with some evolution of both gases for the intermediate ranks. 2. The evolution proceeds over times of years for pulverized coals in sealed ampules. 3. Gas concentrations are higher above -20 mesh samples than above -100 mesh material. 4. Carbon monoxide is not evolved.

Age of acquisition predicts rate of lexical evolution.

PubMed

Monaghan, Padraic

2014-12-01

The processes taking place during language acquisition are proposed to influence language evolution. However, evidence demonstrating the link between language learning and language evolution is, at best, indirect, constituting studies of laboratory-based artificial language learning studies or computational simulations of diachronic change. In the current study, a direct link between acquisition and evolution is established, showing that for two hundred fundamental vocabulary items, the age at which words are acquired is a predictor of the rate at which they have changed in studies of language evolution. Early-acquired words are more salient and easier to process than late-acquired words, and these early-acquired words are also more stably represented within the community's language. Analysing the properties of these early-acquired words potentially provides insight into the origins of communication, highlighting features of words that have been ultra-conserved in language. Copyright © 2014 Elsevier B.V. All rights reserved.

Galaxy evolution in clusters since z~1

NASA Astrophysics Data System (ADS)

Aragon-Salamanca, Alfonso

2010-09-01

Galaxy clusters provide some of the most extreme environments in which galaxies evolve, making them excellent laboratories to study the age old question of "nature" vs. "nurture" in galaxy evolution. Here I review some of the key observational results obtained during the last decade on the evolution of the morphology, structure, dynamics, star-formation history and stellar populations of cluster galaxies since the time when the universe was half its present age. Many of the results presented here have been obtained within the ESO Distant Cluster Survey (EDisCS) and Space Telescope A901/02 Galaxy Evolution Survey (STAGES) collaborations.

Galaxy Evolution in Clusters Since z ~ 1

NASA Astrophysics Data System (ADS)

Aragón-Salamanca, A.

Galaxy clusters provide some of the most extreme environments in which galaxies evolve, making them excellent laboratories to study the age old question of "nature" vs. "nurture" in galaxy evolution. Here I review some of the key observational results obtained during the last decade on the evolution of the morphology, structure, dynamics, star-formation history and stellar populations of cluster galaxies since the time when the Universe was half its present age. Many of the results presented here have been obtained within the ESO Distant Cluster Survey (EDisCS) and Space Telescope A901/02 Galaxy Evolution Survey (STAGES) collaborations.

Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations.

PubMed

Lenski, Richard E

2017-10-01

Evolution is an on-going process, and it can be studied experimentally in organisms with rapid generations. My team has maintained 12 populations of Escherichia coli in a simple laboratory environment for >25 years and 60 000 generations. We have quantified the dynamics of adaptation by natural selection, seen some of the populations diverge into stably coexisting ecotypes, described changes in the bacteria's mutation rate, observed the new ability to exploit a previously untapped carbon source, characterized the dynamics of genome evolution and used parallel evolution to identify the genetic targets of selection. I discuss what the future might hold for this particular experiment, briefly highlight some other microbial evolution experiments and suggest how the fields of experimental evolution and microbial ecology might intersect going forward.

Evolution of catalytic function

NASA Technical Reports Server (NTRS)

Joyce, G. F.

1993-01-01

An RNA-based evolution system was constructed in the laboratory and used to develop RNA enzymes with novel catalytic function. By controlling the nature of the catalytic task that the molecules must perform in order to survive, it is possible to direct the evolving population toward the expression of some desired catalytic behavior. More recently, this system has been coupled to an in vitro translation procedure, raising the possibility of evolving protein enzymes in the laboratory to produce novel proteins with desired catalytic properties. The aim of this line of research is to reduce darwinian evolution, the fundamental process of biology, to a laboratory procedure that can be made to operate in the service of organic synthesis.

The Reel Deal In 3D: The Spatio-Temporal Evolution of YSO Jets

NASA Astrophysics Data System (ADS)

Frank, Adam

2014-10-01

Jets are a ubiquitous phenomena in astrophysics, though in most cases their central engines are unresolvable. Thus the structure of the jets often acts as a proxy for understanding the objects creating them. Jets are also of interest in their own right, serving as critical examples of rapidly evolving astrophysical magnetized plasma systems. And while millions of CPU hours {at least} have been spent simulating the kinds of astrophysical plasma dynamics that occur routinely in jets, we rarely have had the chance to study their real-time evolution. In this proposal we seek to use a unique multi-epoch HST dataset of protostellar jets to carry forward an innovative theoretical, numerical and laboratory-based study of magnetized outflows and the plasma processes which determine their evolution. Our work will make direct and detailed contact with these HST data sets and will articulate newly-observed features of jet dynamics that have not been possible to explore before. Using numerical simulations and laboratory plasma studies we seek to articulate the full 3-D nature of new behaviors seen in the HST data. Our collaboration includes the use of scaled laboratory plasma experiments with hypersonic magnetized radiative jets. The MHD experiments have explored how jets break up into clumps via kink-mode instabilities. Therefore such experiments are directly relevant to the initial conditions in our models.

Viral Evolution Core | FNLCR Staging

Cancer.gov

Brandon F. Keele, Ph.D. PI/Senior Principal Investigator, Retroviral Evolution Section Head, Viral Evolution Core Leidos Biomedical Research, Inc. Frederick National Laboratory for Cancer Research Frederick, MD 21702-1201 Tel: 301-846-173

Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations

PubMed Central

2009-01-01

Background Short-term laboratory evolution of bacteria followed by genomic sequencing provides insight into the mechanism of adaptive evolution, such as the number of mutations needed for adaptation, genotype-phenotype relationships, and the reproducibility of adaptive outcomes. Results In the present study, we describe the genome sequencing of 11 endpoints of Escherichia coli that underwent 60-day laboratory adaptive evolution under growth rate selection pressure in lactate minimal media. Two to eight mutations were identified per endpoint. Generally, each endpoint acquired mutations to different genes. The most notable exception was an 82 base-pair deletion in the rph-pyrE operon that appeared in 7 of the 11 adapted strains. This mutation conferred an approximately 15% increase to the growth rate when experimentally introduced to the wild-type background and resulted in an approximately 30% increase to growth rate when introduced to a background already harboring two adaptive mutations. Additionally, most endpoints had a mutation in a regulatory gene (crp or relA, for example) or the RNA polymerase. Conclusions The 82 base-pair deletion found in the rph-pyrE operon of many endpoints may function to relieve a pyrimidine biosynthesis defect present in MG1655. In contrast, a variety of regulators acquire mutations in the different endpoints, suggesting flexibility in overcoming regulatory challenges in the adaptation. PMID:19849850

Playing evolution in the laboratory: From the first major evolutionary transition to global warming

NASA Astrophysics Data System (ADS)

Fragata, Inês; Simões, Pedro; Matos, Margarida; Szathmáry, Eörs; Santos, Mauro

2018-05-01

Experimental evolution allows testing hypotheses derived from theory or from observed patterns in nature. We have designed a droplet-based microfluidic “evolution machine” to test how transient compartmentalization (“trait-groups”) of independent molecular replicators (likely a critical step in the origin of life) could have prevented the spread of parasitic mutants; that is, inactive RNAs that have been reported to spoil a system of free replicators. In remarkable agreement with the theory, we show that this simple population structure was sufficient to prevent takeover by inactive RNAs. A more complex scenario arises when we use experimental evolution to test field-derived hypotheses; for instance, the idea that temperature is driving genetic spatiotemporal patterns of climate change. In the fly Drosophila subobscura, latitudinal clines in gene arrangement frequencies occur worldwide, and more equatorial gene arrangements are becoming more frequent at higher latitudes as a correlated response to climate change. However, the evolution at different constant temperatures in the laboratory was not consistent with patterns in nature, suggesting some limitations of experimental evolution. Finally, also in D. subobscura, we show that repeatability in experimental evolution is staggeringly consistent for life history traits, making evolution quite predictable and suggesting that laboratory selection can quickly erase differences between populations. Yet, the genetic paths used to attain the same adaptive phenotypes are complex and unpredictable. Contribution to the Focus Issue Evolutionary Modeling and Experimental Evolution edited by José Cuesta, Joachim Krug and Susanna Manrubia.

Mate Choice in Soldier Beetles: Field & Laboratory Experiments that Demonstrate Sexual Selection in Action

ERIC Educational Resources Information Center

Eason, Perri K.; Sherman, Peter T.

2003-01-01

Although the theory of evolution is the foundation of modern biology, students too rarely have an opportunity to watch selection operate in natural populations of animals. This lack may be partially responsible for the unfortunate ignorance of many people regarding the significance of evolution in biology. Laboratory exercises that directly study…

Benefits of a Recombination-Proficient Escherichia coli System for Adaptive Laboratory Evolution.

PubMed

Peabody, George; Winkler, James; Fountain, Weston; Castro, David A; Leiva-Aravena, Enzo; Kao, Katy C

2016-11-15

Adaptive laboratory evolution typically involves the propagation of organisms asexually to select for mutants with the desired phenotypes. However, asexual evolution is prone to competition among beneficial mutations (clonal interference) and the accumulation of hitchhiking and neutral mutations. The benefits of horizontal gene transfer toward overcoming these known disadvantages of asexual evolution were characterized in a strain of Escherichia coli engineered for superior sexual recombination (genderless). Specifically, we experimentally validated the capacity of the genderless strain to reduce the mutational load and recombine beneficial mutations. We also confirmed that inclusion of multiple origins of transfer influences both the frequency of genetic exchange throughout the chromosome and the linkage of donor DNA. We built a simple kinetic model to estimate recombination frequency as a function of transfer size and relative genotype enrichment in batch transfers; the model output correlated well with the experimental data. Our results provide strong support for the advantages of utilizing the genderless strain over its asexual counterpart during adaptive laboratory evolution for generating beneficial mutants with reduced mutational load. Over 80 years ago Fisher and Muller began a debate on the origins of sexual recombination. Although many aspects of sexual recombination have been examined at length, experimental evidence behind the behaviors of recombination in many systems and the means to harness it remain elusive. In this study, we sought to experimentally validate some advantages of recombination in typically asexual Escherichia coli and determine if a sexual strain of E. coli can become an effective tool for strain development. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Benefits of a Recombination-Proficient Escherichia coli System for Adaptive Laboratory Evolution

PubMed Central

Peabody, George; Winkler, James; Fountain, Weston; Castro, David A.; Leiva-Aravena, Enzo

2016-01-01

ABSTRACT Adaptive laboratory evolution typically involves the propagation of organisms asexually to select for mutants with the desired phenotypes. However, asexual evolution is prone to competition among beneficial mutations (clonal interference) and the accumulation of hitchhiking and neutral mutations. The benefits of horizontal gene transfer toward overcoming these known disadvantages of asexual evolution were characterized in a strain of Escherichia coli engineered for superior sexual recombination (genderless). Specifically, we experimentally validated the capacity of the genderless strain to reduce the mutational load and recombine beneficial mutations. We also confirmed that inclusion of multiple origins of transfer influences both the frequency of genetic exchange throughout the chromosome and the linkage of donor DNA. We built a simple kinetic model to estimate recombination frequency as a function of transfer size and relative genotype enrichment in batch transfers; the model output correlated well with the experimental data. Our results provide strong support for the advantages of utilizing the genderless strain over its asexual counterpart during adaptive laboratory evolution for generating beneficial mutants with reduced mutational load. IMPORTANCE Over 80 years ago Fisher and Muller began a debate on the origins of sexual recombination. Although many aspects of sexual recombination have been examined at length, experimental evidence behind the behaviors of recombination in many systems and the means to harness it remain elusive. In this study, we sought to experimentally validate some advantages of recombination in typically asexual Escherichia coli and determine if a sexual strain of E. coli can become an effective tool for strain development. PMID:27613685

Modeling the microstructural changes during hot tandem rolling of AA5 XXX aluminum alloys: Part I. Microstructural evolution

NASA Astrophysics Data System (ADS)

Wells, M. A.; Samarasekera, I. V.; Brimacombe, J. K.; Hawbolt, E. B.; Lloyd, D. J.

1998-06-01

A comprehensive mathematical model of the hot tandem rolling process for aluminum alloys has been developed. Reflecting the complex thermomechanical and microstructural changes effected in the alloys during rolling, the model incorporated heat flow, plastic deformation, kinetics of static recrystallization, final recrystallized grain size, and texture evolution. The results of this microstructural engineering study, combining computer modeling, laboratory tests, and industrial measurements, are presented in three parts. In this Part I, laboratory measurements of static recrystallization kinetics and final recrystallized grain size are described for AA5182 and AA5052 aluminum alloys and expressed quantitatively by semiempirical equations. In Part II, laboratory measurements of the texture evolution during static recrystallization are described for each of the alloys and expressed mathematically using a modified form of the Avrami equation. Finally, Part III of this article describes the development of an overall mathematical model for an industrial aluminum hot tandem rolling process which incorporates the microstructure and texture equations developed and the model validation using industrial data. The laboratory measurements for the microstructural evolution were carried out using industrially rolled material and a state-of-the-art plane strain compression tester at Alcan International. Each sample was given a single deformation and heat treated in a salt bath at 400 °C for various lengths of time to effect different levels of recrystallization in the samples. The range of hot-working conditions used for the laboratory study was chosen to represent conditions typically seen in industrial aluminum hot tandem rolling processes, i.e., deformation temperatures of 350 °C to 500 °C, strain rates of 0.5 to 100 seconds and total strains of 0.5 to 2.0. The semiempirical equations developed indicated that both the recrystallization kinetics and the final recrystallized grain size were dependent on the deformation history of the material i.e., total strain and Zener-Hollomon parameter ( Z), where Z = dot \\varepsilon exp left( {{Q_{def} }/{RT_{def }}} right) and time at the recrystallization temperature.

Mainstreaming Caenorhabditis elegans in experimental evolution.

PubMed

Gray, Jeremy C; Cutter, Asher D

2014-03-07

Experimental evolution provides a powerful manipulative tool for probing evolutionary process and mechanism. As this approach to hypothesis testing has taken purchase in biology, so too has the number of experimental systems that use it, each with its own unique strengths and weaknesses. The depth of biological knowledge about Caenorhabditis nematodes, combined with their laboratory tractability, positions them well for exploiting experimental evolution in animal systems to understand deep questions in evolution and ecology, as well as in molecular genetics and systems biology. To date, Caenorhabditis elegans and related species have proved themselves in experimental evolution studies of the process of mutation, host-pathogen coevolution, mating system evolution and life-history theory. Yet these organisms are not broadly recognized for their utility for evolution experiments and remain underexploited. Here, we outline this experimental evolution work undertaken so far in Caenorhabditis, detail simple methodological tricks that can be exploited and identify research areas that are ripe for future discovery.

Rapid evolution mitigates the ecological consequences of an invasive species (Bythotrephes longimanus) in lakes in Wisconsin.

PubMed

Gillis, Michael K; Walsh, Matthew R

2017-07-12

Invasive species have extensive negative consequences for biodiversity and ecosystem health. Novel species also drive contemporary evolution in many native populations, which could mitigate or amplify their impacts on ecosystems. The predatory zooplankton Bythotrephes longimanus invaded lakes in Wisconsin, USA, in 2009. This invasion caused precipitous declines in zooplankton prey ( Daphnia pulicaria ), with cascading impacts on ecosystem services (water clarity). Here, we tested the link between Bythotrephes invasion, evolution in Daphnia and post-invasion ecological dynamics using 15 years of long-term data in conjunction with comparative experiments. Invasion by Bythotrephes is associated with rapid increases in the body size of Daphnia Laboratory experiments revealed that such shifts have a genetic component; third-generation laboratory-reared Daphnia from 'invaded' lakes are significantly larger and exhibit greater reproductive effort than individuals from 'uninvaded' lakes. This trajectory of evolution should accelerate Daphnia population growth and enhance population persistence. We tested this prediction by comparing analyses of long-term data with laboratory-based simulations, and show that rapid evolution in Daphnia is associated with increased population growth in invaded lakes. © 2017 The Authors.

Meteorites and the Evolution of Our Solar System

NASA Technical Reports Server (NTRS)

Nava, David F.

1999-01-01

The study of meteorites has long been of intense interest ever since these objects were discovered to be of extraterrestrial origin. Meteorite research contributes to unraveling the mysteries in understanding the formation and evolution processes of our solar system. Meteorites, of which there are a variety of widely diverse types of chemical and mineralogical compositions, are the most ancient of solar system objects that can be studied in the laboratory. They preserve a unique historical record of the astronomical and astrophysical events of our solar system. This record is being discerned by a host of ever evolving analytical laboratory methods. Recent discoveries of what are believed to be Martian meteorites, lunar meteorites, a meteorite containing indigenous water, and the recovery from the Cretaceous layer of a small meteorite fragment thought to be from the dinosaur-killing asteroid have fueled additional excitement for studying meteorites.

Laboratory simulation to support the search for organic molecules at the surface of Mars

NASA Astrophysics Data System (ADS)

Poch, Olivier; Szopa, Cyril; Coll, Patrice; Jaber, Maguy; Georgelin, Thomas; Lambert, Jean-Francois; Stalport, Fabien

The search for organic carbon at the surface of Mars, as clues of past habitability or remnants of life, is a major science goal of Mars’ exploration. Understanding the chemical evolution of organic molecules under current Martian environmental conditions is essential to support the analyses performed in situ. What molecule can be preserved? What is the timescale of organic evolution at the surface? Here we present results of laboratory investigations dedicated to monitor qualitative and quantitative evolutions of several organic molecules under simulated Martian surface ultraviolet incident light, mean ground temperature and pressure, using the Mars Organic Molecules Irradiation and Evolution setup (1) . For each organic molecule studied, the nature of the evolution products (solid or gaseous) and the kinetic parameters (extrapolated half-life at Mars, quantum yields) were experimentally determined. The results show that when exposed to UV radiation, specific organic molecules lead to the formation of solid residues, probably of macromolecular nature, which could reach long term stability. On the other hand, the study of the evolution of molecules in presence of nontronite, a clay mineral detected at the surface of Mars, highlights a strong protective effect of the clay reducing dissociation rates for some molecules, whereas a possible catalytic effect is tentatively observed for one studied molecule. These results are essential to support the analyses performed in situ during the past, current and future exploration missions. Moreover, the experimentally determined kinetic parameters provide new inputs for numerical modeling of current reservoirs of organic molecules on Mars. (1) O. Poch et al., Planetary and Space Science 85, 188-197, http://dx.doi.org/10.1016/j.pss.2013.06.013

Evolutionary Biology Digital Dissection Project: Web-Based Laboratory Learning Opportunities for Students

ERIC Educational Resources Information Center

Fabian, Carole Ann

2004-01-01

A university in Buffalo introduced its students to evolution by providing them with information on evidence of evolution, mechanisms for evolution, principles of genetics, selection, adaptation, evolution and sociobiology. This method of teaching with technology enabled students to improve and expand their learning opportunities.

Global Clusters as Laboratories for Stellar Evolution

NASA Technical Reports Server (NTRS)

Catelan, Marcio; Valcarce, Aldo A. R.; Sweigart, Allen V.

2010-01-01

Globular clusters have long been considered the closest approximation to a physicist's laboratory in astrophysics, and as such a near-ideal laboratory for (low-mass) stellar evolution, However, recent observations have cast a shadow on this long-standing paradigm, suggesting the presence of multiple populations with widely different abundance patterns, and - crucially - with widely different helium abundances as welL In this review we discuss which features of the Hertzsprung-Russell diagram may be used as helium abundance indicators, and present an overview of available constraints on the helium abundance in globular clusters,

Getting Wrinkly Spreaders to demonstrate evolution in schools.

PubMed

Spiers, Andrew J

2014-06-01

Understanding evolution is crucial to modern biology, but most teachers would assume that practical demonstrations of evolution in school laboratories are unfeasible. However, perhaps they have not heard of 'evolution in a test tube' and how Wrinkly Spreaders can form the basis for both practical demonstrations of bacterial evolution and further work. Copyright © 2014 Elsevier Ltd. All rights reserved.

Investigating Human Evolution Using Digital Imaging & Craniometry

ERIC Educational Resources Information Center

Robertson, John C.

2007-01-01

Human evolution is an important and intriguing area of biology. The significance of evolution as a component of biology curricula, at all levels, can not be overstated; the need to make the most of opportunities to effectively educate students in evolution as a central and unifying realm of biology is paramount. Developing engaging laboratory or…

[Epidemiology and laboratories: the missing link on the plans to study and prevent infectious diseases in Chile].

PubMed

Cabello C, Felipe

2008-02-01

Viral meningitis, hantavirus and Vibrio parahaemolyticus infections are used as examples to demonstrate that important shortcomings and limitations exist in Chile to study the epidemiology of infectious diseases with modern methods. The lack of a national network of well-connected local and national microbiology laboratories is one of these important shortcomings. The author summarizes the evolution of the systems and institutions that deal with the infectious diseases in the world and in Chile.

Procedure for Adaptive Laboratory Evolution of Microorganisms Using a Chemostat.

PubMed

Jeong, Haeyoung; Lee, Sang J; Kim, Pil

2016-09-20

Natural evolution involves genetic diversity such as environmental change and a selection between small populations. Adaptive laboratory evolution (ALE) refers to the experimental situation in which evolution is observed using living organisms under controlled conditions and stressors; organisms are thereby artificially forced to make evolutionary changes. Microorganisms are subject to a variety of stressors in the environment and are capable of regulating certain stress-inducible proteins to increase their chances of survival. Naturally occurring spontaneous mutations bring about changes in a microorganism's genome that affect its chances of survival. Long-term exposure to chemostat culture provokes an accumulation of spontaneous mutations and renders the most adaptable strain dominant. Compared to the colony transfer and serial transfer methods, chemostat culture entails the highest number of cell divisions and, therefore, the highest number of diverse populations. Although chemostat culture for ALE requires more complicated culture devices, it is less labor intensive once the operation begins. Comparative genomic and transcriptome analyses of the adapted strain provide evolutionary clues as to how the stressors contribute to mutations that overcome the stress. The goal of the current paper is to bring about accelerated evolution of microorganisms under controlled laboratory conditions.

The Evolution of the Language Laboratory: Changes During Fifteen Years of Operation

ERIC Educational Resources Information Center

Stack, Edward M.

1977-01-01

This article summarizes conditions and changes in language laboratories. Types of laboratories and equipment are listed; laboratory personnel include technicians, librarians and student assistants. Most maintenance was done by institution personnel; student use is outlined. Professional attitudes and equipment statistics are surveyed. (CHK)

Laboratory evolution of the migratory polymorphism in the sand cricket: combining physiology with quantitative genetics.

PubMed

Roff, Derek A; Fairbairn, Daphne J

2007-01-01

Predicting evolutionary change is the central goal of evolutionary biology because it is the primary means by which we can test evolutionary hypotheses. In this article, we analyze the pattern of evolutionary change in a laboratory population of the wing-dimorphic sand cricket Gryllus firmus resulting from relaxation of selection favoring the migratory (long-winged) morph. Based on a well-characterized trade-off between fecundity and flight capability, we predict that evolution in the laboratory environment should result in a reduction in the proportion of long-winged morphs. We also predict increased fecundity and reduced functionality and weight of the major flight muscles in long-winged females but little change in short-winged (flightless) females. Based on quantitative genetic theory, we predict that the regression equation describing the trade-off between ovary weight and weight of the major flight muscles will show a change in its intercept but not in its slope. Comparisons across generations verify all of these predictions. Further, using values of genetic parameters estimated from previous studies, we show that a quantitative genetic simulation model can account for not only the qualitative changes but also the evolutionary trajectory. These results demonstrate the power of combining quantitative genetic and physiological approaches for understanding the evolution of complex traits.

Laboratory Studies of Thermotolerance Acquisition during Seed Imbibition and Germination.

ERIC Educational Resources Information Center

Choinski, John S., Jr.

1999-01-01

Describes a series of low-cost experiments to investigate the ability of seeds from different species to acquire tolerance of thermal stress. Suggests links to discussions on molecular biology, physiology, ecology, and evolution. (WRM)

A 13-Week Research-Based Biochemistry Laboratory Curriculum

ERIC Educational Resources Information Center

Lefurgy, Scott T.; Mundorff, Emily C.

2017-01-01

Here, we present a 13-week research-based biochemistry laboratory curriculum designed to provide the students with the experience of engaging in original research while introducing foundational biochemistry laboratory techniques. The laboratory experience has been developed around the directed evolution of an enzyme chosen by the instructor, with…

Laboratory insights into the chemical and kinetic evolution of several organic molecules under simulated Mars surface UV radiation conditions

NASA Astrophysics Data System (ADS)

Poch, O.; Kaci, S.; Stalport, F.; Szopa, C.; Coll, P.

2014-11-01

The search for organic carbon at the surface of Mars, as clues of past habitability or remnants of life, is a major science goal of Mars' exploration. Understanding the chemical evolution of organic molecules under current martian environmental conditions is essential to support the analyses performed in situ. What molecule can be preserved? What is the timescale of organic evolution at the surface? This paper presents the results of laboratory investigations dedicated to monitor the evolution of organic molecules when submitted to simulated Mars surface ultraviolet radiation (190-400 nm), mean temperature (218 ± 2 K) and pressure (6 ± 1 mbar) conditions. Experiments are done with the MOMIE simulation setup (for Mars Organic Molecules Irradiation and Evolution) allowing both a qualitative and quantitative characterization of the evolution the tested molecules undergo (Poch, O. et al. [2013]. Planet. Space Sci. 85, 188-197). The chemical structures of the solid products and the kinetic parameters of the photoreaction (photolysis rate, half-life and quantum efficiency of photodecomposition) are determined for glycine, urea, adenine and chrysene. Mellitic trianhydride is also studied in order to complete a previous study done with mellitic acid (Stalport, F., Coll, P., Szopa, C., Raulin, F. [2009]. Astrobiology 9, 543-549), by studying the evolution of mellitic trianhydride. The results show that solid layers of the studied molecules have half-lives of 10-103 h at the surface of Mars, when exposed directly to martian UV radiation. However, organic layers having aromatic moieties and reactive chemical groups, as adenine and mellitic acid, lead to the formation of photoresistant solid residues, probably of macromolecular nature, which could exhibit a longer photostability. Such solid organic layers are found in micrometeorites or could have been formed endogenously on Mars. Finally, the quantum efficiencies of photodecomposition at wavelengths from 200 to 250 nm, determined for each of the studied molecules, range from 10-2 to 10-6 molecule photon-1 and apply for isolated molecules exposed at the surface of Mars. These kinetic parameters provide essential inputs for numerical modeling of the evolution of Mars' current reservoir of organic molecules. Organic molecules adsorbed on martian minerals may have different kinetic parameters and lead to different endproducts. The present study paves the way for the interpretation of more complex simulation experiments where organics will be mixed with martian mineral analogs.

Neutron star evolution and emission

NASA Astrophysics Data System (ADS)

Epstein, R. I.; Edwards, B. C.; Haines, T. J.

1997-01-01

This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The authors investigated the evolution and radiation characteristics of individual neutron stars and stellar systems. The work concentrated on phenomena where new techniques and observations are dramatically enlarging the understanding of stellar phenomena. Part of this project was a study of x-ray and gamma-ray emission from neutron stars and other compact objects. This effort included calculating the thermal x-ray emission from young neutron stars, deriving the radio and gamma-ray emission from active pulsars and modeling intense gamma-ray bursts in distant galaxies. They also measured periodic optical and infrared fluctuations from rotating neutron stars and search for high-energy TeV gamma rays from discrete celestial sources.

Laboratory Studies of Methane and Its Relationship to Prebiotic Chemistry

NASA Astrophysics Data System (ADS)

Kobayashi, Kensei; Geppert, Wolf D.; Carrasco, Nathalie; Holm, Nils G.; Mousis, Olivier; Palumbo, Maria Elisabetta; Waite, J. Hunter; Watanabe, Naoki; Ziurys, Lucy M.

2017-08-01

To examine how prebiotic chemical evolution took place on Earth prior to the emergence of life, laboratory experiments have been conducted since the 1950s. Methane has been one of the key molecules in these investigations. In earlier studies, strongly reducing gas mixtures containing methane and ammonia were used to simulate possible reactions in the primitive atmosphere of Earth, producing amino acids and other organic compounds. Since Earth's early atmosphere is now considered to be less reducing, the contribution of extraterrestrial organics to chemical evolution has taken on an important role. Such organic molecules may have come from molecular clouds and regions of star formation that created protoplanetary disks, planets, asteroids, and comets. The interstellar origin of organics has been examined both experimentally and theoretically, including laboratory investigations that simulate interstellar molecular reactions. Endogenous and exogenous organics could also have been supplied to the primitive ocean, making submarine hydrothermal systems plausible sites of the generation of life. Experiments that simulate such hydrothermal systems where methane played an important role have consequently been conducted. Processes that occur in other Solar System bodies offer clues to the prebiotic chemistry of Earth. Titan and other icy bodies, where methane plays significant roles, are especially good targets. In the case of Titan, methane is both in the atmosphere and in liquidospheres that are composed of methane and other hydrocarbons, and these have been studied in simulation experiments. Here, we review the wide range of experimental work in which these various terrestrial and extraterrestrial environments have been modeled, and we examine the possible role of methane in chemical evolution.

Impacts of object-oriented technologies: Seven years of SEL studies

NASA Technical Reports Server (NTRS)

Stark, Mike

1993-01-01

This paper examines the premise that object-oriented technology (OOT) is the most significant technology ever examined by the Software Engineering Laboratory. The evolution of the use of OOT in the Software Engineering Laboratory (SEL) 'Experience Factory' is described in terms of the SEL's original expectations, focusing on how successive generations of projects have used OOT. General conclusions are drawn on how the usage of the technology has evolved in this environment.

Quasi-Static Evolution, Catastrophe, and Failed Eruption of Solar Flux Ropes

DTIC Science & Technology

2016-12-30

Naval Research Laboratory Washington, DC 20375-5320 NRL/MR/6794--16-9710 Quasi -Static Evolution, Catastrophe, and “Failed” Eruption of Solar Flux...TELEPHONE NUMBER (include area code) b. ABSTRACT c. THIS PAGE 18. NUMBER OF PAGES 17. LIMITATION OF ABSTRACT Quasi -Static Evolution, Catastrophe...evolution of solar flux ropes subject to slowly increasing magnetic energy, encompassing quasi -static evolution, “catastrophic” transition to an eruptive

Laboratory Evolved Gas Analyses of Si-rich Amorphous Materials: Implications for Analyses of Si-rich Amorphous Material in Gale Crater by the Mars Science Laboratory Sample Analysis at Mars Instrument

NASA Astrophysics Data System (ADS)

McAdam, A.; Knudson, C. A.; Sutter, B.; Andrejkovicova, S. C.; Archer, P. D., Jr.; Franz, H. B.; Eigenbrode, J. L.; Morris, R. V.; Ming, D. W.; Sun, V. Z.; Milliken, R.; Wilhelm, M. B.; Mahaffy, P. R.; Navarro-Gonzalez, R.

2016-12-01

The Chemistry and Mineralogy (CheMin) instrument onboard the Mars Science Laboratory (MSL) rover detected Si-rich amorphous or poorly ordered materials in several samples from Murray Formation mudstones and Stimson Formation sandstones. High-SiO2 amorphous materials such as opal-A or rhyolitic glass are candidate phases, but CheMin data cannot be used to distinguish between these possibilities. In the Buckskin (BS) sample from the upper Murray Formation, and the Big Sky (BY) and Greenhorn (GH) samples from the Stimson Formation, evolved gas analyses by the Sample Analysis at Mars (SAM) instrument showed very broad H2O evolutions during sample heating at temperatures >450-500°C, which had not been observed from previous samples. BS also had a significant broad evolution <450-500°C. We have undertaken a laboratory study targeted at understanding if the data from SAM analyses can be used to place constraints on the nature of the amorphous phases. SAM-like evolved gas analyses have been performed on several opal and rhyolitic glass samples. Opal-A samples exhibited wide <500°C H2O evolutions, with lesser H2O evolved above 500°C. H2O evolution traces from rhyolitic glasses varied, having either two broad H2O peaks, <300°C and >500°C, or a broad peak centered around 400°C. For samples that produced two evolutions, the lower temperature peak was more intense than the higher temperature peak, a trend also exhibited by opal-A. This trend is consistent with data from BS, but does not seem consistent with data from BY and GH which evolved most of their H2O >500°C. It may be that dehydration of opal-A and/or rhyolitic glass can result in some preferential loss of lower temperature H2O, to produce traces that more closely resemble BY and GH. This is currently under investigation and results will be reported.

Big Bang Tumor Growth and Clonal Evolution.

PubMed

Sun, Ruping; Hu, Zheng; Curtis, Christina

2018-05-01

The advent and application of next-generation sequencing (NGS) technologies to tumor genomes has reinvigorated efforts to understand clonal evolution. Although tumor progression has traditionally been viewed as a gradual stepwise process, recent studies suggest that evolutionary rates in tumors can be variable with periods of punctuated mutational bursts and relative stasis. For example, Big Bang dynamics have been reported, wherein after transformation, growth occurs in the absence of stringent selection, consistent with effectively neutral evolution. Although first noted in colorectal tumors, effective neutrality may be relatively common. Additionally, punctuated evolution resulting from mutational bursts and cataclysmic genomic alterations have been described. In this review, we contrast these findings with the conventional gradualist view of clonal evolution and describe potential clinical and therapeutic implications of different evolutionary modes and tempos. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

Galaxy evolution in clusters since z=1

NASA Astrophysics Data System (ADS)

Aragón-Salamanca, A.

2011-11-01

It is now 30 years since Alan Dressler published his seminal paper onthe morphology-density relation. Although there is still much to learnon the effect of the environment on galaxy evolution, extensive progress has been made since then both observationally and theoretically.Galaxy clusters provide some of the most extreme environments in which galaxies evolve, making them excellent laboratories to study the age old question of "nature'' vs. "nurture'' in galaxy evolution. Here I review some of the key observational results obtained during the last decade on the evolution of the morphology, structure, dynamics, star-formation history and stellar populations of cluster galaxies since the time when the universe was half its present age.Many of the results presented here have been obtainedwithin the ESO Distant Cluster Survey (EDisCS) and Space Telescope A901/02 Galaxy Evolution Survey (STAGES) collaborations.

Experimental and theoretical studies on the gas/solid/gas transformation cycle in extraterrestrial environments

NASA Astrophysics Data System (ADS)

Cottin, Hervé; Gazeau, Marie-Claire; Chaquin, Patrick; Raulin, François; Bénilan, Yves

2001-12-01

The ubiquity of molecular material in the universe, from hydrogen to complex organic matter, is the result of intermixed physicochemical processes that have occurred throughout history. In particular, the gas/solid/gas phase transformation cycle plays a key role in chemical evolution of organic matter from the interstellar medium to planetary systems. This paper focuses on two examples that are representative of the diversity of environments where such transformations occur in the Solar System: (1) the photolytic evolution from gaseous to solid material in methane containing planetary atmospheres and (2) the degradation of high molecular weight compounds into gas phase molecules in comets. We are currently developing two programs which couple experimental and theoretical studies. The aim of this research is to provide data necessary to build models in order to better understand (1) the photochemical evolution of Titan's atmosphere, through a laboratory program to determine quantitative spectroscopic data on long carbon chain molecules (polyynes) obtained in the SCOOP program (French acronym for Spectroscopy of Organic Compounds Oriented for Planetology), and (2) the extended sources in comets, through a laboratory program of quantitative studies of photochemical and thermal degradation processes on relevant polymers (e.g., Polyoxymethylene) by the SEMAPhOrE Cometaire program (French acronym for Experimental Simulation and Modeling Applied to Organic Chemistry in Cometary Environment).

Interpretation of spectrophotometric surface properties of comet 67P/Churyumov-Gerasimenko by laboratory simulations of cometary analogs

NASA Astrophysics Data System (ADS)

Jost, Bernhard; Pommerol, Antoine; Poch, Olivier; Carrasco, Nathalie; Szopa, Cyril; Thomas, Nicolas

2015-11-01

The OSIRIS imaging system [1] onboard European Space Agency’s Rosetta mission has been orbiting the comet 67P/Churyumov-Gerasimenko (67P) since August 2014. It provides an enormous quantity of high resolution images of the nucleus in the visible spectral range. 67P revealed an unexpected diversity of complex surface structures and spectral properties have also been measured [2].To better interpret this data, a profound knowledge of laboratory analogs of cometary surfaces is essential. For this reason we have set up the LOSSy laboratory (Laboratory for Outflow Studies of Sublimating Materials) to study the spectrophotometric properties of ice-bearing cometary nucleus analogs. The main focus lies on the characterization of the surface evolution under simulated space conditions. The laboratory is equipped with two facilities: the PHIRE-2 radio-goniometer [3], designed to measure the bidirectional visible reflectance of samples under a wide range of geometries and the SCITEAS simulation chamber [4], designed to study the evolution of icy samples subliming under low pressure/temperature conditions by hyperspectral imaging in the VIS-NIR range. Different microscopes complement the two facilities.We present laboratory data of different types of fine grained ice particles mixed with non-volatile components (complex organic matter and minerals). As the ice sublimes, a deposition lag of non-volatile constituents is built-up on top of the ice, possibly mimic a cometary surface. The bidirectional reflectance of the samples have been characterized before and after the sublimation process.A comparison of our laboratory findings with recent OSIRIS data [5] will be presented.[1] Keller, H. U., et al., 2007, Space Sci. Rev., 128, 26[2] Thomas, N. , 2015, Science, 347, Issue 6220, aaa0440[3] Jost, B., submitted, Icarus[4] Pommerol, A., et al., 2015. Planet Space Sci 109:106-122.[5] Fornasier, S., et al., in press. Icarus, arXiv:1505.06888

Recent progress in Precambrian paleobiology

NASA Technical Reports Server (NTRS)

Schopf, J. W.

1986-01-01

Ongoing studies at UCLA include the following: (1) investigations in Archean and Proterozoic sequences of various locations; (2) laboratory and field studies of modern microbial biocoenoses (analogues of Precambrian microbial communities) especially those at Laguna Mormona, Baja California, Mexico; (3) development of new laboratory techniques for the separation and concentration of minute cellularly preserved fossils for isotopic and organic geochemical analyses; and (4) assembly of a computerized database for assessment of the timing and nature of major events occurring during Precambrian biotic evolution, and of the potential applicability of ancient microbiotas to problems of global biostratigraphy and biogeography.

Evaluation of the accuracy of extraoral laboratory scanners with a single-tooth abutment model: A 3D analysis.

PubMed

Mandelli, Federico; Gherlone, Enrico; Gastaldi, Giorgio; Ferrari, Marco

2017-10-01

The aim of this study was to compare the accuracy of different laboratory scanners using a calibrated coordinate measuring machine as reference. A sand blasted titanium reference model (RM) was scanned with an industrial 3D scanner in order to obtain a reference digital model (dRM) that was saved in the standard tessellation format (.stl). RM was scanned ten times with each one of the tested scanners (GC Europe Aadva, Zfx Evolution, 3Shape D640, 3Shape D700, NobilMetal Sinergia, EGS DScan3, Open Technologies Concept Scan Top) and all the scans were exported in .stl format for the comparison. All files were imported in a dedicated software (Geomagic Qualify 2013). Accuracy was evaluated calculating trueness and precision. Trueness values (μm [95% confidence interval]) were: Aadva 7,7 [6,8-8,5]; Zfx Evolution 9,2 [8,6-9,8]; D640 18,1 [12,2-24,0]; D700 12,8 [12,4-13,3]; Sinergia 31,1 [26,3-35,9]; DScan3 15,6 [11,5-19,7]; Concept Scan Top 28,6 [25,6-31,6]. Differences between scanners were statistically significant (p<.0005). Precision values (μm [95% CI]) were: Aadva 4,0 [3,8-4,2]; Zfx Evolution 5,1 [4,4-5,9]; D640 12,7 [12,4-13,1]; D700 11,0 [10,7-11,3]; Sinergia 16,3 [15,0-17,5]; DScan3 9,5 [8,3-10,6]; Concept Scan Top 19,5 [19,1-19,8]. Differences between scanners were statistically significant (p<.0005). The use a standardized scanning procedure fabricating a titanium reference model is useful to compare trueness and precision of different laboratory scanners; two laboratory scanners (Aadva, Zfx Evolution) were significantly better that other tested scanners. Copyright © 2016 Japan Prosthodontic Society. Published by Elsevier Ltd. All rights reserved.

Chromosomal evolution in Rodentia

PubMed Central

Romanenko, S A; Perelman, P L; Trifonov, V A; Graphodatsky, A S

2012-01-01

Rodentia is the most species-rich mammalian order and includes several important laboratory model species. The amount of new information on karyotypic and phylogenetic relations within and among rodent taxa is rapidly increasing, but a synthesis of these data is currently lacking. Here, we have integrated information drawn from conventional banding studies, recent comparative painting investigations and molecular phylogenetic reconstructions of different rodent taxa. This permitted a revision of several ancestral karyotypic reconstructions, and a more accurate depiction of rodent chromosomal evolution. PMID:22086076

Multi-Agent Simulations of Earth's Dynamics: Towards a Virtual Laboratory for Plate Tectonics

NASA Astrophysics Data System (ADS)

Grigne, C.; Combes, M.; Tisseau, C.; LeYaouanq, S.; Parenthoen, M.; Tisseau, J.

2012-12-01

MACMA (Multi-Agent Convective MAntle) is a new tool developed at Laboratoire Domaines Océaniques (UMR CNRS 6538) and CERV-LabSTICC (Centre Européen de Réalité Virtuelle, UMR CNRS 6285) to simulate evolutive plates tectonics and mantle convection in a 2-D cylindrical geometry (Combes et al., 2012). In this approach, ridges, subduction zones, continents and convective cells are agents, whose behavior is controlled by analytical and phenomenological laws. These agents are autonomous entities which collect information from their environment and interact with each other. The dynamics of the system is mainly based on a force balance on each plate, that accounts for slab pull, ridge push, bending dissipation and viscous convective drag. Insulating continents are accounted for. Tectonic processes such as trench migration, plate suturing or continental breakup are controlled by explicit parameterizations. A heat balance is used to compute Earth's thermal evolution as a function of seafloor age distribution. We thereby obtain an evolutive system where the geometry and the number of tectonic plates are not imposed but emerge naturally from its dynamical history. Our approach has a very low computational cost and allows us to study the effect of a wide range of input parameters on the long-term thermal evolution of the Earth. MACMA can thus be seen as a 'plate tectonics virtual laboratory'. We can test not only the effect of input parameters, such as mantle initial temperature and viscosity, initial plate tectonics configuration, number and geometry of continents etc., but also study the effect of the analytical and empirical rules that we are using to describe the system. These rules can be changed at any time, and MACMA is an evolutive tool that can easily integrate new behavioral laws. Even poorly understood processes, that cannot be accounted for with differential equations, can be studied with this virtual laboratory. For Earth-like input parameters, MACMA yields plate velocities and heat flux that are in good agreement with observations. The long-term thermal evolution of the Earth obtained with our model shows a slow monotonous decrease of mantle mean temperature, with a cooling rate of around 50-100 K per billion years, which is in good agreement with petrological and geochemical constraints. Heat flux and plate velocities show a more irregular evolution, because tectonic events, such as a continental breakup, give rise to abrupt changes in Earth's surface dynamics and heat loss. Therefore MACMA is a powerful tool to study in a systematic way the effect of local events (subduction initiation, continental breakup, ridge vanishing) on plate reorganizations and global surface dynamics.

Music Evolution in the Laboratory: Cultural Transmission Meets Neurophysiology

PubMed Central

Lumaca, Massimo; Ravignani, Andrea; Baggio, Giosuè

2018-01-01

In recent years, there has been renewed interest in the biological and cultural evolution of music, and specifically in the role played by perceptual and cognitive factors in shaping core features of musical systems, such as melody, harmony, and rhythm. One proposal originates in the language sciences. It holds that aspects of musical systems evolve by adapting gradually, in the course of successive generations, to the structural and functional characteristics of the sensory and memory systems of learners and “users” of music. This hypothesis has found initial support in laboratory experiments on music transmission. In this article, we first review some of the most important theoretical and empirical contributions to the field of music evolution. Next, we identify a major current limitation of these studies, i.e., the lack of direct neural support for the hypothesis of cognitive adaptation. Finally, we discuss a recent experiment in which this issue was addressed by using event-related potentials (ERPs). We suggest that the introduction of neurophysiology in cultural transmission research may provide novel insights on the micro-evolutionary origins of forms of variation observed in cultural systems. PMID:29713263

Music Evolution in the Laboratory: Cultural Transmission Meets Neurophysiology.

PubMed

Lumaca, Massimo; Ravignani, Andrea; Baggio, Giosuè

2018-01-01

In recent years, there has been renewed interest in the biological and cultural evolution of music, and specifically in the role played by perceptual and cognitive factors in shaping core features of musical systems, such as melody, harmony, and rhythm. One proposal originates in the language sciences. It holds that aspects of musical systems evolve by adapting gradually, in the course of successive generations, to the structural and functional characteristics of the sensory and memory systems of learners and "users" of music. This hypothesis has found initial support in laboratory experiments on music transmission. In this article, we first review some of the most important theoretical and empirical contributions to the field of music evolution. Next, we identify a major current limitation of these studies, i.e., the lack of direct neural support for the hypothesis of cognitive adaptation. Finally, we discuss a recent experiment in which this issue was addressed by using event-related potentials (ERPs). We suggest that the introduction of neurophysiology in cultural transmission research may provide novel insights on the micro-evolutionary origins of forms of variation observed in cultural systems.

Investigating yellow dung fly body size evolution in the field: Response to climate change?

PubMed

Blanckenhorn, Wolf U

2015-08-01

Uncovering genetic responses to selection in wild populations typically requires tracking individuals over generations and use of animal models. Our group monitored the body size of one Swiss Yellow Dung Fly (Scathophaga stercoraria; Diptera: Scathophagidae) field population over 15 years, including intermittent common-garden rearing in the laboratory to assess body size with minimized environmental and maximized genetic variation. Contrary to expectations based on repeated heritability and phenotypic selection assessments over the years (reported elsewhere), field body sizes declined by >10% and common-garden laboratory sizes by >5% from 1993 to 2009. Our results confirm the temperature-size rule (smaller when warmer) and, albeit entirely correlational, could be mediated by climate change, as over this period mean temperature at the site increased by 0.5°C, although alternative systematic environmental changes cannot be entirely excluded. Monitoring genetic responses to selection in wild invertebrate populations is thus possible, though indirect, and wild populations may evolve in directions not consistent with strongly positive directional selection favoring large body size. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

Evolution Kills: A Web Resource for Instructors of Evolutionary Biology

ERIC Educational Resources Information Center

Vondrasek, Joanna R.; Antonovics, Janis; Taylor, Douglas R.

2004-01-01

We have developed a laboratory course that demonstrates how evolution can be taught as a participatory, investigative science at the undergraduate college or advanced secondary high school level. The course emphasizes the applied importance of evolution to areas such as medicine and agriculture. Because many instructors face budgetary or other…

Equilibrium features and eruptive instabilities in laboratory magnetic flux rope plasmas

NASA Astrophysics Data System (ADS)

Myers, Clayton E; Yamada, Masaaki; Belova, Elena V; Ji, Hantao; Yoo, Jongsoo; Fox, William

2014-06-01

One avenue for connecting laboratory and solar plasma studies is to carry out laboratory plasma experiments that serve as a well-diagnosed model for specific solar phenomena. In this paper, we present the latest results from one such laboratory experiment that is designed to address ideal instabilities that drive flux rope eruptions in the solar corona. The experiment, which utilizes the existing Magnetic Reconnection Experiment (MRX) at Princeton Plasma Physics Laboratory, generates a quasi-statically driven line-tied magnetic flux rope in a solar-relevant potential field arcade. The parameters of the potential field arcade (e.g., its magnitude, orientation, and vertical profile) are systematically scanned in order to study their influence on the evolution and possible eruption of the line-tied flux rope. Each flux rope discharge is diagnosed using a combination of fast visible light cameras and an in situ 2D magnetic probe array that measures all three components of the magnetic field over a large cross-section of the plasma. In this paper, we present the first results obtained from this new 2D magnetic probe array. With regard to the flux rope equilibrium, non-potential features such as the formation of a characteristic sigmoid shape and the generation of core toroidal field within the flux rope are studied in detail. With regard to instabilities, the onset and evolution of two key eruptive instabilities—the kink and torus instabilities—are quantitatively assessed as a function of the potential field arcade parameters and the amount of magnetic energy stored in the flux rope.This research is supported by DoE Contract Number DE-AC02-09CH11466 and by the NSF/DoE Center for Magnetic Self-Organization (CMSO).

Laboratory Studies of Methane and Its Relationship to Prebiotic Chemistry.

PubMed

Kobayashi, Kensei; Geppert, Wolf D; Carrasco, Nathalie; Holm, Nils G; Mousis, Olivier; Palumbo, Maria Elisabetta; Waite, J Hunter; Watanabe, Naoki; Ziurys, Lucy M

2017-08-01

To examine how prebiotic chemical evolution took place on Earth prior to the emergence of life, laboratory experiments have been conducted since the 1950s. Methane has been one of the key molecules in these investigations. In earlier studies, strongly reducing gas mixtures containing methane and ammonia were used to simulate possible reactions in the primitive atmosphere of Earth, producing amino acids and other organic compounds. Since Earth's early atmosphere is now considered to be less reducing, the contribution of extraterrestrial organics to chemical evolution has taken on an important role. Such organic molecules may have come from molecular clouds and regions of star formation that created protoplanetary disks, planets, asteroids, and comets. The interstellar origin of organics has been examined both experimentally and theoretically, including laboratory investigations that simulate interstellar molecular reactions. Endogenous and exogenous organics could also have been supplied to the primitive ocean, making submarine hydrothermal systems plausible sites of the generation of life. Experiments that simulate such hydrothermal systems where methane played an important role have consequently been conducted. Processes that occur in other Solar System bodies offer clues to the prebiotic chemistry of Earth. Titan and other icy bodies, where methane plays significant roles, are especially good targets. In the case of Titan, methane is both in the atmosphere and in liquidospheres that are composed of methane and other hydrocarbons, and these have been studied in simulation experiments. Here, we review the wide range of experimental work in which these various terrestrial and extraterrestrial environments have been modeled, and we examine the possible role of methane in chemical evolution. Key Words: Methane-Interstellar environments-Submarine hydrothermal systems-Titan-Origin of life. Astrobiology 17, 786-812.

Laboratory evolution of protein conformational dynamics.

PubMed

Campbell, Eleanor C; Correy, Galen J; Mabbitt, Peter D; Buckle, Ashley M; Tokuriki, Nobuhiko; Jackson, Colin J

2017-11-08

This review focuses on recent work that has begun to establish specific functional roles for protein conformational dynamics, specifically how the conformational landscapes that proteins can sample can evolve under laboratory based evolutionary selection. We discuss recent technical advances in computational and biophysical chemistry, which have provided us with new ways to dissect evolutionary processes. Finally, we offer some perspectives on the emerging view of conformational dynamics and evolution, and the challenges that we face in rationally engineering conformational dynamics. Copyright © 2017 Elsevier Ltd. All rights reserved.

Case-Study Investigation of Equine Maternity via PCR-RFLP: A Biochemistry Laboratory Experiment

PubMed Central

Millard, Julie T.; Chuang, Edward; Lucas, James S.; Nagy, Erzsebet E.; Davis, Griffin T.

2013-01-01

A simple and robust biochemistry laboratory experiment is described that uses restriction fragment length polymorphism (RFLP) of polymerase chain reaction (PCR) products to verify the identity of a potentially valuable horse. During the first laboratory period, students purify DNA from equine samples and amplify two loci of mitochondrial DNA. During the second laboratory period, students digest PCR products with restriction enzymes and analyze the fragment sizes through agarose gel electrophoresis. An optional step of validating DNA extracts through realtime PCR can expand the experiment to three weeks. This experiment, which has an engaging and versatile scenario, provides students with exposure to key principles and techniques of molecular biology, bioinformatics, and evolution in a forensic context. PMID:24363455

From fish to fashion: experimental and theoretical insights into the evolution of culture

PubMed Central

Laland, K. N.; Atton, N.; Webster, M. M.

2011-01-01

Recent years have witnessed a re-evaluation of the cognitive capabilities of fishes, including with respect to social learning. Indeed, some of the best experimental evidence for animal traditions can be found in fishes. Laboratory experimental studies reveal that many fishes acquire dietary, food site and mating preferences, predator recognition and avoidance behaviour, and learn pathways, through copying1 other fishes. Concentrating on foraging behaviour, we will present the findings of laboratory experiments that reveal social learning, behavioural innovation, the diffusion of novel behaviour through populations and traditional use of food sites. Further studies reveal surprisingly complex social learning strategies deployed by sticklebacks. We will go on to place these observations of fish in a phylogenetic context, describing in which respects the learning and traditionality of fish are similar to, and differ from, that observed in other animals. We end by drawing on theoretical insights to suggest processes that may have played important roles in the evolution of the human cultural capability. PMID:21357218

Experimental macroevolution†

PubMed Central

Bell, Graham

2016-01-01

The convergence of several disparate research programmes raises the possibility that the long-term evolutionary processes of innovation and radiation may become amenable to laboratory experimentation. Ancestors might be resurrected directly from naturally stored propagules or tissues, or indirectly from the expression of ancestral genes in contemporary genomes. New kinds of organisms might be evolved through artificial selection of major developmental genes. Adaptive radiation can be studied by mimicking major ecological transitions in the laboratory. All of these possibilities are subject to severe quantitative and qualitative limitations. In some cases, however, laboratory experiments may be capable of illuminating the processes responsible for the evolution of new kinds of organisms. PMID:26763705

Tracking Local Spatiotemporal Microfracturing Processes and Stress Field Evolution Before and After Laboratory Fault Slip

NASA Astrophysics Data System (ADS)

Kwiatek, G.; Orlecka-Sikora, B.; Goebel, T.; Martínez-Garzón, P.; Dresen, G.; Bohnhoff, M.

2017-12-01

In this study we investigate details of spatial and temporal evolution of the stress field and damage at a pre-existing fault plane in laboratory stick-slip friction experiments performed on Westerly Granite sample. Specimen of 10 cm height and 4 cm diameter was deformed at a constant strain rate of 3×10-6 s-1 and confining pressure of 150 MPa. Here we analyze a series of 6 macroscopic slip events occurring on a rough fault during the course of experiment. Each macroscopic slip was associated with an intense femtoseismic acoustic emission (AE) activity recorded using a 16-channel transient recording system. To monitor the the spatiotemporal damage evolution, and unravel the micromechanical processes governing nucleation and propagation of slip events, we analyzed AE source characteristics (magnitude, seismic moment tensors, focal mechanisms), as well as the statistical properties (b-, c-, d- value) of femtoseismicity. In addition, the calculated AE focal mechanisms were used to reveal the spatiotemporal evolution of local stress field orientations and stress shape ratio coefficients over the fault plane, as well as additional parameters quantifying proximity to failure of individual fault patches. The calculated characteristics are used to comprehensively describe the complexity of the spatial and temporal evolution of the stress over the fault plane, and properties of the corresponding seismicity before and after the macroscopic slips. The observed faulting processes and characteristics are discussed in the context of global strain and stress changes, fault maturation, and earthquake stress drop.

Evolution in the Lab: Biocide Resistance in E.coli.

ERIC Educational Resources Information Center

Welden, Charles W.; Hossler, Rex A.

2003-01-01

Describes a laboratory experiment on resistance to teach about evolution and issues of misuse of antimicrobial compounds. Investigates Escherichia coli's response to treatment of triclosan, a biocide used in consumer products. (Contains 12 references.) (YDS)

Atomic hydrogen and diatomic titanium-monoxide molecular spectroscopy in laser-induced plasma

NASA Astrophysics Data System (ADS)

Parigger, Christian G.; Woods, Alexander C.

2017-03-01

This article gives a brief review of experimental studies of hydrogen Balmer series emission spectra. Ongoing research aims to evaluate early plasma evolution following optical breakdown in laboratory air. Of interest is as well laser ablation of metallic titanium and characterization of plasma evolution. Emission of titanium monoxide is discussed together with modeling of diatomic spectra to infer temperature. The behavior of titanium particles in plasma draws research interests ranging from the modeling of stellar atmospheres to the enhancement of thin film production via pulsed laser deposition.

Porosity and Permeability Evolution Accompanying Hot fluid Injection into Diatomite, SUPRI TR-123

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diabira, I.; Castanier, L.M.; Kovscek, A.R.

2001-04-19

An experimental study of silica dissolution was performed to probe the evolution of permeability and porosity in siliceous diatomite during hot fluid injection such as water or steam flooding. Two competing mechanisms were identified. Silica solubility in water at elevated temperature causes rock dissolution thereby increasing permeability; however, the rock is mechanically weak leading to compressing of the solid matrix during injection. Permeability and porosity can decrease at the onset of fluid flow. A laboratory flow apparatus was designed and built to examine these processes in diatomite core samples.

Crystal plasticity assisted prediction on the yield locus evolution and forming limit curves

NASA Astrophysics Data System (ADS)

Lian, Junhe; Liu, Wenqi; Shen, Fuhui; Münstermann, Sebastian

2017-10-01

The aim of this study is to predict the plastic anisotropy evolution and its associated forming limit curves of bcc steels purely based on their microstructural features by establishing an integrated multiscale modelling approach. Crystal plasticity models are employed to describe the micro deformation mechanism and correlate the microstructure with mechanical behaviour on micro and mesoscale. Virtual laboratory is performed considering the statistical information of the microstructure, which serves as the input for the phenomenological plasticity model on the macroscale. For both scales, the microstructure evolution induced evolving features, such as the anisotropic hardening, r-value and yield locus evolution are seamlessly integrated. The predicted plasticity behaviour by the numerical simulations are compared with experiments. These evolutionary features of the material deformation behaviour are eventually considered for the prediction of formability.

Host-finding behaviour in the nematode Pristionchus pacificus.

PubMed

Brown, Federico D; D'Anna, Isabella; Sommer, Ralf J

2011-11-07

Costs and benefits of foraging have been studied in predatory animals. In nematodes, ambushing or cruising behaviours represent adaptations that optimize foraging strategies for survival and host finding. A behaviour associated with host finding of ambushing nematode dauer juveniles is a sit-and-wait behaviour, otherwise known as nictation. Here, we test the function of nictation by relating occurrence of nictation in Pristionchus pacificus dauer juveniles to the ability to attach to laboratory host Galleria mellonella. We used populations of recently isolated and mutagenized laboratory strains. We found that nictation can be disrupted using a classical forward genetic approach and characterized two novel nictation-defective mutant strains. We identified two recently isolated strains from la Réunion island, one with a higher proportion of nictating individuals than the laboratory strain P. pacificus PS312. We found a positive correlation between nictation frequencies and host attachment in these strains. Taken together, our combination of genetic analyses with natural variation studies presents a new approach to the investigation of behavioural and ecological functionality. We show that nictation behaviour in P. pacificus nematodes serves as a host-finding behaviour. Our results suggest that nictation plays a role in the evolution of new life-history strategies, such as the evolution of parasitism.

Characterization of liver function parameter alterations after transjugular intrahepatic portosystemic shunt creation and association with early mortality.

PubMed

Casadaban, Leigh C; Parvinian, Ahmad; Couture, Patrick M; Minocha, Jeet; Knuttinen, M Grace; Bui, James T; Gaba, Ron C

2014-12-01

The purpose of this article is to characterize the temporal evolution and clinical impact of laboratory liver function parameters after transjugular intrahepatic portosystemic shunt (TIPS) creation. In this single-institution retrospective study, 157 patients (98 men and 59 women; median age, 55 years) underwent TIPS between 2000 and 2012 and had 1-month hepatobiliary laboratory follow-up. Medical record review was used to compare baseline, peak, and low bilirubin, aspartate aminotransferase (AST), alanine aminotransferase (ALT), alkaline phosphatase, and international normalized ratio (INR) levels within 30 days after TIPS in surviving and dying patients to assess laboratory responses to shunt creation. TIPSs were created with a hemodynamic success rate of 98%, with median pressure gradient reduction of 13 mm Hg. Ninety-day mortality was 21%. Hepatobiliary laboratory values showed significant increases in the days after TIPS compared with baseline levels (bilirubin, 1.6 vs 3.5 mg/dL; AST, 49 vs 149 U/L; ALT, 26 vs 90 U/L; alkaline phosphatase, 97 vs 177 U/L; and INR, 1.5 vs 2.0; p<0.05 in all cases). Patients surviving to 90 days experienced statistically significant but transient laboratory value elevations-up to twofold over baseline-within days of TIPS, whereas patients dying within 90 days experienced three-to fourfold increases over a longer period that did not return to baseline. Differences in laboratory evolution were statistically significant in surviving versus dying patients. TIPS results in acute transient elevation of hepatobiliary enzymes, which may be more pronounced in patients with early mortality. An exaggerated laboratory elevation in excess of threefold greater than baseline or a prolonged increase exceeding 1 week may herald poorer clinical outcome.

Ion beams 12, Legnaro 6-8 June 2012, the 50 years (1961-2011) of the Legnaro Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ricci, Renato Angelo

2013-07-18

A short review of the history of the Legnaro Laboratory is presented since its foundation 50 years ago by Prof. A. Rostagni of the University of Padova. The evolution of the Laboratory as a national reference center for fundamental and applied nuclear physics researches is outlined, pointing out its transformation into the INFN National Laboratories in 1968. After the first CN VdG Accelerator of 5.5 MV operating in 1961 and the AN2000 devoted to interdisciplinary researches (1971), i.e. 40 years ago, ten years later the advent of the first heavy ion facility in Italy, the XTU Tandem accelerator, and latermore » on of the ALPI superconducting linear accelerator, was crucial for any future developments, not only in the field of nuclear physics but also for the evolution of interdisciplinary programmes with ion beams.« less

Measuring cancer evolution from the genome.

PubMed

Graham, Trevor A; Sottoriva, Andrea

2017-01-01

The temporal dynamics of cancer evolution remain elusive, because it is impractical to longitudinally observe cancers unperturbed by treatment. Consequently, our knowledge of how cancers grow largely derives from inferences made from a single point in time - the endpoint in the cancer's evolution, when it is removed from the body and studied in the laboratory. Fortuitously however, the cancer genome, by virtue of ongoing mutations that uniquely mark clonal lineages within the tumour, provides a rich, yet surreptitious, record of cancer development. In this review, we describe how a cancer's genome can be analysed to reveal the temporal history of mutation and selection, and discuss why both selective and neutral evolution feature prominently in carcinogenesis. We argue that selection in cancer can only be properly studied once we have some understanding of what the absence of selection looks like. We review the data describing punctuated evolution in cancer, and reason that punctuated phenotype evolution is consistent with both gradual and punctuated genome evolution. We conclude that, to map and predict evolutionary trajectories during carcinogenesis, it is critical to better understand the relationship between genotype change and phenotype change. Copyright © 2016 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. Copyright © 2016 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

The Evolution of Structural Order as a Measure of Thermal History of Coke in the Blast Furnace

NASA Astrophysics Data System (ADS)

Lundgren, Maria; Khanna, Rita; Ökvist, Lena Sundqvist; Sahajwalla, Veena; Björkman, Bo

2014-04-01

Investigations were carried out on cokes heat treated in the laboratory and on cokes extracted from the experimental blast furnace (EBF) raceway and hearth. X-ray diffraction (XRD) measurements were performed to investigate changes in structural order ( L c), chemical transformations in coke ash along with comparative thermodynamic equilibrium studies and the influence of melt. Three data processing approaches were used to compute L c values as a function of temperature and time and linear correlations were established between L c and heat treatment temperatures during laboratory investigations. These were used to estimate temperatures experienced by coke in various regions of EBF and estimated raceway temperatures were seen to follow the profile of combustion peak. The MgAl2O4 spinel was observed in coke submerged in slag during laboratory studies and in cokes found further into the raceway. Coke in contact with hot metal showed XRD peaks corresponding to presence of Fe3Si. The intensity of SiO2 peak in coke ash was seen to decrease with increasing temperature and disappeared at around 1770 K (1500 °C) due to the formation of SiC. This study has shown that the evolution of structural order and chemical transformations in coke could be used to estimate its thermal history in blast furnaces.

Genetics of Rapid and Extreme Size Evolution in Island Mice

PubMed Central

Gray, Melissa M.; Parmenter, Michelle D.; Hogan, Caley A.; Ford, Irene; Cuthbert, Richard J.; Ryan, Peter G.; Broman, Karl W.; Payseur, Bret A.

2015-01-01

Organisms on islands provide a revealing window into the process of adaptation. Populations that colonize islands often evolve substantial differences in body size from their mainland relatives. Although the ecological drivers of this phenomenon have received considerable attention, its genetic basis remains poorly understood. We use house mice (subspecies: Mus musculus domesticus) from remote Gough Island to provide a genetic portrait of rapid and extreme size evolution. In just a few hundred generations, Gough Island mice evolved the largest body size among wild house mice from around the world. Through comparisons with a smaller-bodied wild-derived strain from the same subspecies (WSB/EiJ), we demonstrate that Gough Island mice achieve their exceptional body weight primarily by growing faster during the 6 weeks after birth. We use genetic mapping in large F2 intercrosses between Gough Island mice and WSB/EiJ to identify 19 quantitative trait loci (QTL) responsible for the evolution of 16-week weight trajectories: 8 QTL for body weight and 11 QTL for growth rate. QTL exhibit modest effects that are mostly additive. We conclude that body size evolution on islands can be genetically complex, even when substantial size changes occur rapidly. In comparisons to published studies of laboratory strains of mice that were artificially selected for divergent body sizes, we discover that the overall genetic profile of size evolution in nature and in the laboratory is similar, but many contributing loci are distinct. Our results underscore the power of genetically characterizing the entire growth trajectory in wild populations and lay the foundation necessary for identifying the mutations responsible for extreme body size evolution in nature. PMID:26199233

Genetics of Rapid and Extreme Size Evolution in Island Mice.

PubMed

Gray, Melissa M; Parmenter, Michelle D; Hogan, Caley A; Ford, Irene; Cuthbert, Richard J; Ryan, Peter G; Broman, Karl W; Payseur, Bret A

2015-09-01

Organisms on islands provide a revealing window into the process of adaptation. Populations that colonize islands often evolve substantial differences in body size from their mainland relatives. Although the ecological drivers of this phenomenon have received considerable attention, its genetic basis remains poorly understood. We use house mice (subspecies: Mus musculus domesticus) from remote Gough Island to provide a genetic portrait of rapid and extreme size evolution. In just a few hundred generations, Gough Island mice evolved the largest body size among wild house mice from around the world. Through comparisons with a smaller-bodied wild-derived strain from the same subspecies (WSB/EiJ), we demonstrate that Gough Island mice achieve their exceptional body weight primarily by growing faster during the 6 weeks after birth. We use genetic mapping in large F(2) intercrosses between Gough Island mice and WSB/EiJ to identify 19 quantitative trait loci (QTL) responsible for the evolution of 16-week weight trajectories: 8 QTL for body weight and 11 QTL for growth rate. QTL exhibit modest effects that are mostly additive. We conclude that body size evolution on islands can be genetically complex, even when substantial size changes occur rapidly. In comparisons to published studies of laboratory strains of mice that were artificially selected for divergent body sizes, we discover that the overall genetic profile of size evolution in nature and in the laboratory is similar, but many contributing loci are distinct. Our results underscore the power of genetically characterizing the entire growth trajectory in wild populations and lay the foundation necessary for identifying the mutations responsible for extreme body size evolution in nature. Copyright © 2015 by the Genetics Society of America.

A Case Study of the De Novo Evolution of a Complex Odometric Behavior in Digital Organisms

PubMed Central

Grabowski, Laura M.; Bryson, David M.; Dyer, Fred C.; Pennock, Robert T.; Ofria, Charles

2013-01-01

Investigating the evolution of animal behavior is difficult. The fossil record leaves few clues that would allow us to recapitulate the path that evolution took to build a complex behavior, and the large population sizes and long time scales required prevent us from re-evolving such behaviors in a laboratory setting. We present results of a study in which digital organisms–self-replicating computer programs that are subject to mutations and selection–evolved in different environments that required information about past experience for fitness-enhancing behavioral decisions. One population evolved a mechanism for step-counting, a surprisingly complex odometric behavior that was only indirectly related to enhancing fitness. We examine in detail the operation of the evolved mechanism and the evolutionary transitions that produced this striking example of a complex behavior. PMID:23577113

Some insights on the dust properties of nearby galaxies, as seen with Herschel

NASA Astrophysics Data System (ADS)

Galliano, Frédéric

2017-12-01

Nearby galaxies are particularly relevant laboratories to study dust evolution due to the diversity of physical conditions they harbor and to the wealth of data at our disposal. In this paper, we review several recent advances in this field, mainly based on Herschel observations. We first discuss the problems linked with our ignorance of grain emissivities, and show that it can be constrained in some cases. New models are starting to incorporate these constraints. We then present methodological issues encountered when fitting spectral energy distributions, leading to biases in derived dust properties, and some attempts to solve them. Subsequently, we review studies scrutinizing dust evolution: (i) from a global point of view, inferring long term cosmic dust evolution; (ii) from a local point of view, looking for indices of dust processing in the ISM.

Effect of sediment transport boundary conditions on the numerical modeling of bed morphodynamics

USDA-ARS?s Scientific Manuscript database

Experimental sediment transport studies in laboratory flumes can use two sediment-supply methods: an imposed feed at the upstream end or recirculation of sediment from the downstream end to the upstream end. These methods generally produce similar equilibrium bed morphology, but temporal evolution c...

High-mass stars in Milky Way clusters

NASA Astrophysics Data System (ADS)

Negueruela, Ignacio

2017-11-01

Young open clusters are our laboratories for studying high-mass star formation and evolution. Unfortunately, the information that they provide is difficult to interpret, and sometimes contradictory. In this contribution, I present a few examples of the uncertainties that we face when confronting observations with theoretical models and our own assumptions.

Dwarf Galaxies: Laboratories for Nucleosynthesis and Chemical Evolution

NASA Astrophysics Data System (ADS)

Kirby, Evan N.

2018-06-01

The dwarf galaxies in the Local Group are excellent laboratories for studying the creation of the elements (nucleosynthesis) and the build-up of those elements over time (chemical evolution). The galaxies' proximity permits spectroscopy of individual stars, from which detailed elemental abundances can be measured. Their small sizes and, in some cases, short star formation lifetimes imprinted chemical histories that are easy to interpret relative to larger, more complex galaxies, like the Milky Way.I will briefly review some techniques for measuring elemental abundances from medium-resolution spectroscopy of individual stars. I will show how the metallicity distributions of dwarf galaxies reflect their gas content at the time they were forming stars. Then, I will show how the ratio of alpha elements (for example, magnesium) to iron reveals the star formation history. Finally, I will use certain elements to tease out details of nucleosynthetic events. For example, low manganese and cobalt abundances indicate that the typical Type Ia supernova in dwarf galaxies was a low-density white dwarf, and the evolution of barium suggests that neutron star mergers were most likely responsible for the majority of neutron-capture elements in smaller dwarf galaxies.

[Evolution of chemistry laboratory and instruments looked from plates books from XVIIth to the end of the first half of XIXth century].

PubMed

Viel, Claude

2009-10-01

After a general presentation of the laboratory, the Lavoisier and Guyton de Morveau laboratories are described from Arthur Young's memoirs. After, more important furnaces, distillatory apparatus, vessels and pneumatic chemistry instruments are exposed, balances and the different mixtures to seal distillery vessels are rapidly presented.

The evolution of ecological tolerance in prokaryotes

NASA Technical Reports Server (NTRS)

Knoll, A. H.; Bauld, J.

1989-01-01

The ecological ranges of Archaeobacteria and Eubacteria are constrained by a requirement for liquid water and the physico-chemical stability limits of biomolecules, but within this broad envelope, prokaryotes have evolved adaptations that permit them to tolerate a remarkable spectrum of habitats. Laboratory experiments indicate that prokaryotes can adapt rapidly to novel environmental conditions, yet geological studies suggest early diversification and long-term stasis within the prokaryotic kingdoms. These apparently contradictory perspectives can be reconciled by understanding that, in general, rates and patterns of prokaryotic evolution reflect the developmental history of the Earth's surface environments. Our understanding of modern microbial ecology provides a lens through which our accumulating knowledge of physiology, molecular phylogeny and the Earth's history can be integrated and focussed on the phenomenon of prokaryotic evolution.

What's Happening in the Software Engineering Laboratory?

NASA Technical Reports Server (NTRS)

Pajerski, Rose; Green, Scott; Smith, Donald

1995-01-01

Since 1976 the Software Engineering Laboratory (SEL) has been dedicated to understanding and improving the way in which one NASA organization the Flight Dynamics Division (FDD) at Goddard Space Flight Center, develops, maintains, and manages complex flight dynamics systems. This paper presents an overview of recent activities and studies in SEL, using as a framework the SEL's organizational goals and experience based software improvement approach. It focuses on two SEL experience areas : (1) the evolution of the measurement program and (2) an analysis of three generations of Cleanroom experiments.

Can Man Control His Biological Evolution? A Symposium on Genetic Engineering. Man's Responsibility to His Future

ERIC Educational Resources Information Center

Hoagland, Hudson

1972-01-01

Biological evolution can be carried out in the laboratory. With new knowledge available in genetics, possibilities are raised that genetic characters can be transferred in the future to embryos according to a predetermined plan. (PS)

Order Matters: The Order of Somatic Mutations Influences Cancer Evolution.

PubMed

Kent, David G; Green, Anthony R

2017-04-03

Cancers evolve as a consequence of multiple somatic lesions, with competition between subclones and sequential subclonal evolution. Some driver mutations arise either early or late in the evolution of different individual tumors, suggesting that the final malignant properties of a subclone reflect the sum of mutations acquired rather than the order in which they arose. However, very little is known about the cellular consequences of altering the order in which mutations are acquired. Recent studies of human myeloproliferative neoplasms show that the order in which individual mutations are acquired has a dramatic impact on the cell biological and molecular properties of tumor-initiating cells. Differences in clinical presentation, complications, and response to targeted therapy were all observed and implicate mutation order as an important player in cancer biology. These observations represent the first demonstration that the order of mutation acquisition influences stem and progenitor cell behavior and clonal evolution in any cancer. Thus far, the impact of different mutation orders has only been studied in hematological malignancies, and analogous studies of solid cancers are now required. Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

Hormone signaling and phenotypic plasticity in nematode development and evolution.

PubMed

Sommer, Ralf J; Ogawa, Akira

2011-09-27

Phenotypic plasticity refers to the ability of an organism to adopt different phenotypes depending on environmental conditions. In animals and plants, the progression of juvenile development and the formation of dormant stages are often associated with phenotypic plasticity, indicating the importance of phenotypic plasticity for life-history theory. Phenotypic plasticity has long been emphasized as a crucial principle in ecology and as facilitator of phenotypic evolution. In nematodes, several examples of phenotypic plasticity have been studied at the genetic and developmental level. In addition, the influence of different environmental factors has been investigated under laboratory conditions. These studies have provided detailed insight into the molecular basis of phenotypic plasticity and its ecological and evolutionary implications. Here, we review recent studies on the formation of dauer larvae in Caenorhabditis elegans, the evolution of nematode parasitism and the generation of a novel feeding trait in Pristionchus pacificus. These examples reveal a conserved and co-opted role of an endocrine signaling module involving the steroid hormone dafachronic acid. We will discuss how hormone signaling might facilitate life-history and morphological evolution. Copyright © 2011 Elsevier Ltd. All rights reserved.

Search for clues of life or habitability at Mars: laboratory simulation of the evolution of organic molecules at the surface of Mars

NASA Astrophysics Data System (ADS)

Poch, Olivier; Szopa, Cyril; Coll, Patrice; Jaber, Maguy; Georgelin, Thomas; Lambert, Jean-Francois; Stalport, Fabien

Several lines of evidence suggest that early Mars offered favorable conditions for long-term sustaining water. As a consequence, we can assume that in those days, endogenous chemical processes, or even primitive life, may have produced organic matter on Mars. Moreover, exogenous delivery from small bodies or dust particles is likely to have brought fresh organic molecules to the surface of Mars until now. Organic matter is therefore expected to be present at the surface/subsurface of the planet. The search for these organic relics is one of the main objectives of Mars exploration missions. But current environmental conditions at the surface - UV radiation, oxidants and energetic particles - can generate physico-chemical processes that may induce organic molecules evolution. Here we present results of laboratory investigations dedicated to monitor qualitative and quantitative evolutions of several organic molecules under simulated Martian surface ultraviolet incident light, mean ground temperature and pressure, using the Mars Organic Molecules Irradiation and Evolution setup (1) . For each organic molecule studied, the nature of the evolution products (solid or gaseous) and the kinetic parameters (extrapolated half-life at Mars, quantum yields) were experimentally determined. The results show that when exposed to UV radiation, specific organic molecules lead to the formation of solid residues, probably of macromolecular nature, which could reach long term stability. On the other hand, the study of the evolution of molecules in presence of nontronite, a clay mineral detected at the surface of Mars, highlights a strong protective effect of the clay reducing dissociation rates for some molecules, whereas a possible catalytic effect is tentatively observed for one studied molecule. These results are essential to support the analyses performed in situ during the past, current and future exploration missions. Moreover, the experimentally determined kinetic parameters provide new inputs for numerical modeling of current reservoirs of organic molecules on Mars. (1) O. Poch et al., Planetary and Space Science 85, 188-197, http://dx.doi.org/10.1016/j.pss.2013.06.013

An Autonomous System for Experimental Evolution of Microbial Cultures: Test Results Using Ultraviolet-C Radiation and Escherichia Coli.

NASA Technical Reports Server (NTRS)

Ouandji, Cynthia; Wang, Jonathan; Arismendi, Dillon; Lee, Alonzo; Blaich, Justin; Gentry, Diana

2017-01-01

At its core, the field of microbial experimental evolution seeks to elucidate the natural laws governing the history of microbial life by understanding its underlying driving mechanisms. However, observing evolution in nature is complex, as environmental conditions are difficult to control. Laboratory-based experiments for observing population evolution provide more control, but manually culturing and studying multiple generations of microorganisms can be time consuming, labor intensive, and prone to inconsistency. We have constructed a prototype, closed system device that automates the process of directed evolution experiments in microorganisms. It is compatible with any liquid microbial culture, including polycultures and field samples, provides flow control and adjustable agitation, continuously monitors optical density (OD), and can dynamically control environmental pressures such as ultraviolet-C (UV-C) radiation and temperature. Here, the results of the prototype are compared to iterative exposure and survival assays conducted using a traditional hood, UV-C lamp, and shutter system.

Chemical evolution of Macondo crude oil during laboratory degradation as characterized by fluorescence EEMs and hydrocarbon composition.

PubMed

Zhou, Zhengzhen; Liu, Zhanfei; Guo, Laodong

2013-01-15

The fluorescence EEM technique, PARAFAC modeling, and hydrocarbon composition were used to characterize oil components and to examine the chemical evolution and degradation pathways of Macondo crude oil under controlled laboratory conditions. Three major fluorescent oil components were identified, with Ex/Em maxima at 226/328, 262/315, and 244/366 nm, respectively. An average degradation half-life of ∼20 d was determined for the oil components based on fluorescence EEM and hydrocarbon composition measurements, showing a dynamic chemical evolution and transformation of the oil during degradation. Dispersants appeared to change the chemical characteristics of oil, to shift the fluorescence EEM spectra, and to enhance the degradation of low-molecular-weight hydrocarbons. Photochemical degradation played a dominant role in the transformation of oil components, likely an effective degradation pathway of oil in the water column. Results from laboratory experiments should facilitate the interpretation of field-data and provide insights for understanding the fate and transport of oil components in the Gulf of Mexico. Copyright © 2012 Elsevier Ltd. All rights reserved.

Infrared thermography applied to the study of heated and solar pavement: from numerical modeling to small scale laboratory experiments

NASA Astrophysics Data System (ADS)

Le Touz, N.; Toullier, T.; Dumoulin, J.

2017-05-01

The present study addresses the thermal behaviour of a modified pavement structure to prevent icing at its surface in adverse winter time conditions or overheating in hot summer conditions. First a multi-physic model based on infinite elements method was built to predict the evolution of the surface temperature. In a second time, laboratory experiments on small specimen were carried out and the surface temperature was monitored by infrared thermography. Results obtained are analyzed and performances of the numerical model for real scale outdoor application are discussed. Finally conclusion and perspectives are proposed.

Slowly switching between environments facilitates reverse evolution in small populations.

PubMed

Tan, Longzhi; Gore, Jeff

2012-10-01

Natural populations must constantly adapt to ever-changing environmental conditions. A particularly interesting question is whether such adaptations can be reversed by returning the population to an ancestral environment. Such evolutionary reversals have been observed in both natural and laboratory populations. However, the factors that determine the reversibility of evolution are still under debate. The time scales of environmental change vary over a wide range, but little is known about how the rate of environmental change influences the reversibility of evolution. Here, we demonstrate computationally that slowly switching between environments increases the reversibility of evolution for small populations that are subject to only modest clonal interference. For small populations, slow switching reduces the mean number of mutations acquired in a new environment and also increases the probability of reverse evolution at each of these "genetic distances." As the population size increases, slow switching no longer reduces the genetic distance, thus decreasing the evolutionary reversibility. We confirm this effect using both a phenomenological model of clonal interference and also a Wright-Fisher stochastic simulation that incorporates genetic diversity. Our results suggest that the rate of environmental change is a key determinant of the reversibility of evolution, and provides testable hypotheses for experimental evolution. © 2012 The Author(s). Evolution© 2012 The Society for the Study of Evolution.

Structure and Evolution of Scientific Collaboration Networks in a Modern Research Collaboratory

ERIC Educational Resources Information Center

Pepe, Alberto

2010-01-01

This dissertation is a study of scientific collaboration at the Center for Embedded Networked Sensing (CENS), a modern, multi-disciplinary, distributed laboratory involved in sensor network research. By use of survey research and network analysis, this dissertation examines the collaborative ecology of CENS in terms of three networks of…

Time rate of local scour at complex bridge piers field and laboratory analyses : final report, April 2009.

DOT National Transportation Integrated Search

2009-04-01

A local scour evolution field study was conducted under this contract. One of the piers on the A1A Bridge over the Intracoastal Waterway (ICCW) in Fort Pierce, Florida was selected for the test site. The existing local scour hole was filled with sand...

Thinking about Evolution: Combinatorial Play as a Strategy for Exercising Scientific Creativity

ERIC Educational Resources Information Center

Wingate, Richard J. T.

2011-01-01

An enduring focus in education on how scientists formulate experiments and "do science" in the laboratory has excluded a vital element of scientific practice: the creative and imaginative thinking that generates models and testable hypotheses. In this case study, final-year biomedical sciences university students were invited to create and justify…

Viruses of haloarchaea.

PubMed

Luk, Alison W S; Williams, Timothy J; Erdmann, Susanne; Papke, R Thane; Cavicchioli, Ricardo

2014-11-13

In hypersaline environments, haloarchaea (halophilic members of the Archaea) are the dominant organisms, and the viruses that infect them, haloarchaeoviruses are at least ten times more abundant. Since their discovery in 1974, described haloarchaeoviruses include head-tailed, pleomorphic, spherical and spindle-shaped morphologies, representing Myoviridae, Siphoviridae, Podoviridae, Pleolipoviridae, Sphaerolipoviridae and Fuselloviridae families. This review overviews current knowledge of haloarchaeoviruses, providing information about classification, morphotypes, macromolecules, life cycles, genetic manipulation and gene regulation, and host-virus responses. In so doing, the review incorporates knowledge from laboratory studies of isolated viruses, field-based studies of environmental samples, and both genomic and metagenomic analyses of haloarchaeoviruses. What emerges is that some haloarchaeoviruses possess unique morphological and life cycle properties, while others share features with other viruses (e.g., bacteriophages). Their interactions with hosts influence community structure and evolution of populations that exist in hypersaline environments as diverse as seawater evaporation ponds, to hot desert or Antarctic lakes. The discoveries of their wide-ranging and important roles in the ecology and evolution of hypersaline communities serves as a strong motivator for future investigations of both laboratory-model and environmental systems.

Multicentric comparative assessment of the bio-evolution Toxoplasma gondii detection kit with eight laboratory-developed PCR assays for molecular diagnosis of congenital toxoplasmosis.

PubMed

Filisetti, Denis; Sterkers, Yvon; Brenier-Pinchart, Marie-Pierre; Cassaing, Sophie; Dalle, Frédéric; Delhaes, Laurence; Pelloux, Hervé; Touafek, Fériel; Varlet-Marie, Emmanuelle; Yera, Hélène; Candolfi, Ermano; Bastien, Patrick

2015-01-01

The detection of Toxoplasma gondii in amniotic fluid is an essential tool for the prenatal diagnosis of congenital toxoplasmosis and is currently essentially based on the use of PCR. Although some consensus is emerging, this molecular diagnosis suffers from a lack of standardization and an extreme diversity of laboratory-developed methods. Commercial kits for the detection of T. gondii by PCR were recently developed and offer certain advantages; however, they must be assessed in comparison with optimized reference PCR assays. The present multicentric study aimed to compare the performances of the Bio-Evolution T. gondii detection kit and laboratory-developed PCR assays set up in eight proficient centers in France. The study compared 157 amniotic fluid samples and found concordances of 99% and 100% using 76 T. gondii-infected samples and 81 uninfected samples, respectively. Moreover, taking into account the classification of the European Research Network on Congenital Toxoplasmosis, the overall diagnostic sensitivity of all assays was identical and calculated to be 86% (54/63); specificity was 100% for all assays. Finally, the relative quantification results were in good agreement between the kit and the laboratory-developed assays. The good performances of this commercial kit are probably in part linked to the use of a number of good practices: detection in multiplicate, amplification of the repetitive DNA target rep529, and the use of an internal control for the detection of PCR inhibitors. The only drawbacks noted at the time of the study were the absence of uracil-N-glycosylase and small defects in the reliability of the production of different reagents. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Multicentric Comparative Assessment of the Bio-Evolution Toxoplasma gondii Detection Kit with Eight Laboratory-Developed PCR Assays for Molecular Diagnosis of Congenital Toxoplasmosis

PubMed Central

Filisetti, Denis; Sterkers, Yvon; Brenier-Pinchart, Marie-Pierre; Cassaing, Sophie; Dalle, Frédéric; Delhaes, Laurence; Pelloux, Hervé; Touafek, Fériel; Varlet-Marie, Emmanuelle; Yera, Hélène; Candolfi, Ermano

2014-01-01

The detection of Toxoplasma gondii in amniotic fluid is an essential tool for the prenatal diagnosis of congenital toxoplasmosis and is currently essentially based on the use of PCR. Although some consensus is emerging, this molecular diagnosis suffers from a lack of standardization and an extreme diversity of laboratory-developed methods. Commercial kits for the detection of T. gondii by PCR were recently developed and offer certain advantages; however, they must be assessed in comparison with optimized reference PCR assays. The present multicentric study aimed to compare the performances of the Bio-Evolution T. gondii detection kit and laboratory-developed PCR assays set up in eight proficient centers in France. The study compared 157 amniotic fluid samples and found concordances of 99% and 100% using 76 T. gondii-infected samples and 81 uninfected samples, respectively. Moreover, taking into account the classification of the European Research Network on Congenital Toxoplasmosis, the overall diagnostic sensitivity of all assays was identical and calculated to be 86% (54/63); specificity was 100% for all assays. Finally, the relative quantification results were in good agreement between the kit and the laboratory-developed assays. The good performances of this commercial kit are probably in part linked to the use of a number of good practices: detection in multiplicate, amplification of the repetitive DNA target rep529, and the use of an internal control for the detection of PCR inhibitors. The only drawbacks noted at the time of the study were the absence of uracil-N-glycosylase and small defects in the reliability of the production of different reagents. PMID:25339393

Exploration in the Complexity of Possible Life: Abstracting and Synthesizing the Principles of Living Systems - Proceedings of the German Workshop on Artificial Life (7th) Held in Jena, Germany on 26-28 Jul 2006

DTIC Science & Technology

2006-01-01

artificial chemistry. 1 Introduction Chemical evolution (i.e., prebiotic evolution) is concerned with the period of life’s history that precedes the...arrival of the first living organism [17]. Since Miller’s pioneering work [19, 20], prebiotic chemistry has been studied in various laboratory...Bada. The 1953 Stanley L. Miller experiment: fifty years of prebiotic organic chemistry. Orig Life Evol Biosph, 33(3):235–42, 2003. 145 [17] J. Maynard

[TRAUMATIC INTRAORGANIC HEPATIC AND SPLENIC HEMATOMAS].

PubMed

Timerbulatov, V M; Khalikov, A A; Timerbulatov, Sh V; Verzakova, I V; Amirova, A M; Smyr, R A

2015-01-01

An analysis of application results of complex research methods of diagnostics of intraorganic hepatic and splenic hematomas was made. At the same time, options of these methods were used for determination of prescription of injury. The ultrasound, CT, MR-imaging, videolaparoscopy, angiography, Doppler ultrasonics, impedometry, biochemical, laboratory and cytological study of punctate sample from hematomas were applied for this purpose in 33 patients. According to authors, an evolution of hematomas happened in 3 stages, each of this stage was characterized by specified data associated with investigation results. The staging procedure of hematomas or their evolution allowed setting the prescription of injury.

Exponential Formulae and Effective Operations

NASA Technical Reports Server (NTRS)

Mielnik, Bogdan; Fernandez, David J. C.

1996-01-01

One of standard methods to predict the phenomena of squeezing consists in splitting the unitary evolution operator into the product of simpler operations. The technique, while mathematically general, is not so simple in applications and leaves some pragmatic problems open. We report an extended class of exponential formulae, which yield a quicker insight into the laboratory details for a class of squeezing operations, and moreover, can be alternatively used to programme different type of operations, as: (1) the free evolution inversion; and (2) the soft simulations of the sharp kicks (so that all abstract results involving the kicks of the oscillator potential, become realistic laboratory prescriptions).

Drift-driven evolution of electric signals in a Neotropical knifefish.

PubMed

Picq, Sophie; Alda, Fernando; Bermingham, Eldredge; Krahe, Rüdiger

2016-09-01

Communication signals are highly diverse traits. This diversity is usually assumed to be shaped by selective forces, whereas the null hypothesis of divergence through drift is often not considered. In Panama, the weakly electric fish Brachyhypopomus occidentalis is widely distributed in multiple independent drainage systems, which provide a natural evolutionary laboratory for the study of genetic and signal divergence in separate populations. We quantified geographic variation in the electric signals of 109 fish from five populations, and compared it to the neutral genetic variation estimated from cytochrome oxidase I (COI) sequences of the same individuals, to test whether drift may be driving divergence of their signals. Signal distances were highly correlated with genetic distances, even after controlling for geographic distances, suggesting that drift alone is sufficient to explain geographic variation in electric signals. Significant differences at smaller geographic scales (within drainages) showed, however, that electric signals may evolve at a faster rate than expected under drift, raising the possibility that additional adaptive forces may be contributing to their evolution. Overall, our data point to stochastic forces as main drivers of signal evolution in this species and extend the role of drift in the evolution of communication systems to fish and electrocommunication. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Ancestral gene reconstruction and synthesis of ancient rhodopsins in the laboratory.

PubMed

Chang, Belinda S W

2003-08-01

Laboratory synthesis of ancestral proteins offers an intriguing opportunity to study the past directly. The development of Bayesian methods to infer ancestral sequences, combined with advances in models of molecular evolution, and synthetic gene technology make this an increasingly promising approach in evolutionary studies of molecular function. Visual pigments form the first step in the biochemical cascade of events in the retina in all animals known to possess visual capabilities. In vertebrates, the necessity of spanning a dynamic range of light intensities of many orders of magnitude has given rise to two different types of photoreceptors, rods specialized for dim-light conditions, and cones for daylight and color vision. These photoreceptors contain different types of visual pigment genes. Reviewed here are methods of inferring ancestral sequences, chemical synthesis of artificial ancestral genes in the laboratory, and applications to the evolution of vertebrate visual systems and the experimental recreation of an archosaur rod visual pigment. The ancestral archosaurs gave rise to several notable lineages of diapsid reptiles, including the birds and the dinosaurs, and would have existed over 200 MYA. What little is known of their physiology comes from fossil remains, and inference based on the biology of their living descendants. Despite its age, an ancestral archosaur pigment was successfully recreated in the lab, and showed interesting properties of its wavelength sensitivity that may have implications for the visual capabilities of the ancestral archosaurs in dim light.

Laboratory and observational study of the interrelation of the carbonaceous component of interstellar dust and solar system materials

NASA Technical Reports Server (NTRS)

Allamandola, L. J.; Sanford, S. A.; Schutte, W. A.; Tielens, A. G. G. M.

1991-01-01

By studying the chemical and isotopic composition of interstellar ice and dust, one gains insight into the composition and chemical evolution of the solid bodies in the solar nebula and the nature of the material subsequently brought into the inner part of the solar system by comets and meteorites. It is now possible to spectroscopically probe the composition of interstellar ice and dust in the mid-infrared, the spectral range which is most diagnostic of fundamental molecular vibrations. We can compare these spectra of various astronomical objects (including the diffuse and dense interstellar medium, comets, and the icy outer planets and their satellites) with the spectra of analogs we produce in the laboratory under conditions which mimic those in these different objects. In this way one can determine the composition and abundances of the major constituents of the various ices and place general constraints on the types of organics coating the grains in the diffuse interstellar medium. In particular we have shown the ices in the dense clouds contain H2O, CH3OH, CO, perhaps some NH3 and H2CO, we well as nitriles and ketones or esters. Furthermore, by studying the photochemistry of these ice analogs in the laboratory, one gains insight into the chemistry which takes place in interstellar/precometary ices. Chemical and spectroscopic studies of photolyzed analogs (including deuterated species) are now underway. The results of some of these studies will be presented and implications for the evolution of the biogenic elements in interstellar dust and comets will be discussed.

Genetic and evolutionary characterization of RABVs from China using the phosphoprotein gene.

PubMed

Wang, Lihua; Wu, Hui; Tao, Xiaoyan; Li, Hao; Rayner, Simon; Liang, Guodong; Tang, Qing

2013-01-07

While the function of the phosphoprotein (P) gene of the rabies virus (RABV) has been well studied in laboratory adapted RABVs, the genetic diversity and evolution characteristics of the P gene of street RABVs remain unclear. The objective of the present study was to investigate the mutation and evolution of P genes in Chinese street RABVs. The P gene of 77 RABVs from brain samples of dogs and wild animals collected in eight Chinese provinces through 2003 to 2008 were sequenced. The open reading frame (ORF) of the P genes was 894 nucleotides (nt) in length, with 85-99% (80-89%) amino acid (nucleotide) identity compared with the laboratory RABVs and vaccine strains. Phylogenetic analysis based on the P gene revealed that Chinese RABVs strains could be divided into two distinct clades, and several RABV variants were found to co circulating in the same province. Two conserved (CD1, 2) and two variable (VD1, 2) domains were identified by comparing the deduced primary sequences of the encoded P proteins. Two sequence motifs, one believed to confer binding to the cytoplasmic dynein light chain LC8 and a lysine-rich sequence were conserved throughout the Chinese RABVs. In contrast, the isolates exhibited lower conservation of one phosphate acceptor and one internal translation initiation site identified in the P protein of the rabies challenge virus standard (CVS) strain. Bayesian coalescent analysis showed that the P gene in Chinese RABVs have a substitution rate (3.305x10(-4) substitutions per site per year) and evolution history (592 years ago) similar to values for the glycoprotein (G) and nucleoprotein (N) reported previously. Several substitutions were found in the P gene of Chinese RABVs strains compared to the laboratory adapted and vaccine strains, whether these variations could affect the biological characteristics of Chinese RABVs need to be further investigated. The substitution rate and evolution history of P gene is similar to G and N gene, combine the topology of phylogenetic tree based on the P gene is similar to the G and N gene trees, indicate that the P, G and N genes are equally valid for examining the phylogenetics of RABVs.

Testing the Merger Paradigm: X-ray Observations of Radio-Selected Sub-Galactic-Scale Binary AGNs

NASA Astrophysics Data System (ADS)

Fu, Hai

2016-09-01

Interactions play an important role in galaxy evolution. Strong gas inflows are expected in the process of gas-rich mergers, which may fuel intense black hole accretion and star formation. Sub-galactic-scale binary/dual AGNs thus offer elegant laboratories to study the merger-driven co-evolution phase. However, previous samples of kpc-scale binaries are small and heterogeneous. We have identified a flux-limited sample of kpc-scale binary AGNs uniformly from a wide-area high-resolution radio survey conducted by the VLA. Here we propose Chandra X-ray characterization of a subset of four radio-confirmed binary AGNs at z 0.1. Our goal is to compare their X-ray properties with those of matched control samples to test the merger-driven co-evolution paradigm.

De Laboratoria Van Klinische Biologie in Belgie: Evolutie En Situatie Na Organisatie Van De Verpl1Chte Externe KWaliteitscontrole.

PubMed

Libeer, J C; Gilleten, R; Lafontaine, A

1982-01-01

The evolution and the situation of the laboratories of clinical biology in Belgium is described. This paper gives a point of view of the locality, the activity and the employment in these laboratories.

The evolution of hillslope strength following large earthquakes

NASA Astrophysics Data System (ADS)

Brain, Matthew; Rosser, Nick; Tunstall, Neil

2017-04-01

Earthquake-induced landslides play an important role in the evolution of mountain landscapes. Earthquake ground shaking triggers near-instantaneous landsliding, but has also been shown to weaken hillslopes, preconditioning them for failure during subsequent seismicity and/or precipitation events. The temporal evolution of hillslope strength during and following primary seismicity, and if and how this ultimately results in failure, is poorly constrained due to the rarity of high-magnitude earthquakes and limited availability of suitable field datasets. We present results obtained from novel geotechnical laboratory tests to better constrain the mechanisms that control strength evolution in Earth materials of differing rheology. We consider how the strength of hillslope materials responds to ground-shaking events of different magnitude and if and how this persists to influence landslide activity during interseismic periods. We demonstrate the role of stress path and stress history, strain rate and foreshock and aftershock sequences in controlling the evolution of hillslope strength and stability. Critically, we show how hillslopes can be strengthened rather than weakened in some settings, challenging conventional assumptions. On the basis of our laboratory data, we consider the implications for earthquake-induced geomorphic perturbations in mountain landscapes over multiple timescales and in different seismogenic settings.

The Convergent Evolution of a Chemistry Project: Using Laboratory Posters as a Platform for Web Page Construction.

ERIC Educational Resources Information Center

Rigeman, Sally

1998-01-01

Argues that evolution is a process that occurs within the curriculum as well as within the physical universe. Provides an example that involves student presentations. Discusses the transition from poster presentations to electronic presentations via the World Wide Web. (DDR)

Laboratory experiments in the study of the chemistry of the outer planets.

PubMed

Scattergood, T W

1987-01-01

The investigation of chemical evolution of bodies in our solar system has, in the past, included observations, theoretical modeling, and laboratory simulations. Of these programs, the last one has been the most criticized due to the inherent difficulties in accurately recreating alien environments in the laboratory. Processes such as wall reactions and changes in chemistry due to difficulties in achieving realistic conditions of temperature, pressure, composition, and energy flux may yield results which are not truly representative of the systems being modeled. However, many laboratory studies have been done which have yielded data useful in planetary science. Gross simulations of atmospheric chemistry have placed constraints on the nature of complex molecules expected in planetary atmospheres. More precise studies of specific chemical processes have provided information about the sources and properties of product gases and aerosols. Determinations of basic properties such as spectral features and reaction rate constants yield data useful in the interpretation of observations and in computational modeling. Alone, and in conjunction with modeling, laboratory experiments will continue to be used to further our understanding of the outer solar system, and some experiments that need to be done are listed.

Evolution of Quality Assurance for Clinical Immunohistochemistry in the Era of Precision Medicine: Part 4: Tissue Tools for Quality Assurance in Immunohistochemistry.

PubMed

Cheung, Carol C; D'Arrigo, Corrado; Dietel, Manfred; Francis, Glenn D; Fulton, Regan; Gilks, C Blake; Hall, Jacqueline A; Hornick, Jason L; Ibrahim, Merdol; Marchetti, Antonio; Miller, Keith; van Krieken, J Han; Nielsen, Soren; Swanson, Paul E; Taylor, Clive R; Vyberg, Mogens; Zhou, Xiaoge; Torlakovic, Emina E

2017-04-01

The numbers of diagnostic, prognostic, and predictive immunohistochemistry (IHC) tests are increasing; the implementation and validation of new IHC tests, revalidation of existing tests, as well as the on-going need for daily quality assurance monitoring present significant challenges to clinical laboratories. There is a need for proper quality tools, specifically tissue tools that will enable laboratories to successfully carry out these processes. This paper clarifies, through the lens of laboratory tissue tools, how validation, verification, and revalidation of IHC tests can be performed in order to develop and maintain high quality "fit-for-purpose" IHC testing in the era of precision medicine. This is the final part of the 4-part series "Evolution of Quality Assurance for Clinical Immunohistochemistry in the Era of Precision Medicine."

Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

PubMed

Long, Christopher P; Gonzalez, Jacqueline E; Feist, Adam M; Palsson, Bernhard O; Antoniewicz, Maciek R

2017-11-01

Adaptive laboratory evolution (ALE) is a widely-used method for improving the fitness of microorganisms in selected environmental conditions. It has been applied previously to Escherichia coli K-12 MG1655 during aerobic exponential growth on glucose minimal media, a frequently used model organism and growth condition, to probe the limits of E. coli growth rate and gain insights into fast growth phenotypes. Previous studies have described up to 1.6-fold increases in growth rate following ALE, and have identified key causal genetic mutations and changes in transcriptional patterns. Here, we report for the first time intracellular metabolic fluxes for six such adaptively evolved strains, as determined by high-resolution 13 C-metabolic flux analysis. Interestingly, we found that intracellular metabolic pathway usage changed very little following adaptive evolution. Instead, at the level of central carbon metabolism the faster growth was facilitated by proportional increases in glucose uptake and all intracellular rates. Of the six evolved strains studied here, only one strain showed a small degree of flux rewiring, and this was also the strain with unique genetic mutations. A comparison of fluxes with two other wild-type (unevolved) E. coli strains, BW25113 and BL21, showed that inter-strain differences are greater than differences between the parental and evolved strains. Principal component analysis highlighted that nearly all flux differences (95%) between the nine strains were captured by only two principal components. The distance between measured and flux balance analysis predicted fluxes was also investigated. It suggested a relatively wide range of similar stoichiometric optima, which opens new questions about the path-dependency of adaptive evolution. Copyright © 2017 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring

PubMed Central

Long, Christopher P.; Gonzalez, Jacqueline E.; Feist, Adam M.; Palsson, Bernhard O.; Antoniewicz, Maciek R.

2018-01-01

Adaptive laboratory evolution (ALE) is a widely-used method for improving the fitness of microorganisms in selected environmental conditions. It has been applied previously to Escherichia coli K-12 MG1655 during aerobic exponential growth on glucose minimal media, a frequently used model organism and growth condition, to probe the limits of E. coli growth rate and gain insights into fast growth phenotypes. Previous studies have described up to 1.6-fold increases in growth rate following ALE, and have identified key causal genetic mutations and changes in transcriptional patterns. Here, we report for the first time intracellular metabolic fluxes for six such adaptively evolved strains, as determined by high-resolution 13C-metabolic flux analysis. Interestingly, we found that intracellular metabolic pathway usage changed very little following adaptive evolution. Instead, at the level of central carbon metabolism the faster growth was facilitated by proportional increases in glucose uptake and all intracellular rates. Of the six evolved strains studied here, only one strain showed a small degree of flux rewiring, and this was also the strain with unique genetic mutations. A comparison of fluxes with two other wild-type (unevolved) E. coli strains, BW25113 and BL21, showed that inter-strain differences are greater than differences between the parental and evolved strains. Principal component analysis highlighted that nearly all flux differences (95%) between the nine strains were captured by only two principal components. The distance between measured and flux balance analysis predicted fluxes was also investigated. It suggested a relatively wide range of similar stoichiometric optima, which opens new questions about the path-dependency of adaptive evolution. PMID:28951266

Transhydrogenase Promotes the Robustness and Evolvability of E. coli Deficient in NADPH Production

PubMed Central

Chou, Hsin-Hung; Marx, Christopher J.; Sauer, Uwe

2015-01-01

Metabolic networks revolve around few metabolites recognized by diverse enzymes and involved in myriad reactions. Though hub metabolites are considered as stepping stones to facilitate the evolutionary expansion of biochemical pathways, changes in their production or consumption often impair cellular physiology through their system-wide connections. How does metabolism endure perturbations brought immediately by pathway modification and restore hub homeostasis in the long run? To address this question we studied laboratory evolution of pathway-engineered Escherichia coli that underproduces the redox cofactor NADPH on glucose. Literature suggests multiple possibilities to restore NADPH homeostasis. Surprisingly, genetic dissection of isolates from our twelve evolved populations revealed merely two solutions: (1) modulating the expression of membrane-bound transhydrogenase (mTH) in every population; (2) simultaneously consuming glucose with acetate, an unfavored byproduct normally excreted during glucose catabolism, in two subpopulations. Notably, mTH displays broad phylogenetic distribution and has also played a predominant role in laboratory evolution of Methylobacterium extorquens deficient in NADPH production. Convergent evolution of two phylogenetically and metabolically distinct species suggests mTH as a conserved buffering mechanism that promotes the robustness and evolvability of metabolism. Moreover, adaptive diversification via evolving dual substrate consumption highlights the flexibility of physiological systems to exploit ecological opportunities. PMID:25715029

Coupled Pendulums: A Physical System for Laboratory Investigations at Upper Secondary School

ERIC Educational Resources Information Center

Picciarelli, Vittorio; Stella, Rosa

2010-01-01

The topic of coupled oscillations is rich in physical content which is both interesting and complex. The study of the time evolution of coupled oscillator systems involves a mathematical formalization beyond the level of the upper secondary school student's competence. Here, we present an original approach, suitable even for secondary students, to…

Laboratory Studies on the Formation of Carbon-Bearing Molecules in Extraterrestrial Environments: From the Gas Phase to the Solid State

NASA Technical Reports Server (NTRS)

Jamieson, C. S.; Guo, Y.; Gu, X.; Zhang, F.; Bennett, C. J.; Kaiser, R. I.

2006-01-01

A detailed knowledge of the formation of carbon-bearing molecules in interstellar ices and in the gas phase of the interstellar medium is of paramount interest to understand the astrochemical evolution of extraterrestrial environments (1). This research also holds strong implications to comprehend the chemical processing of Solar System environments such as icy planets and their moons together with the atmospheres of planets and their satellites (2). Since the present composition of each interstellar and Solar System environment reflects the matter from which it was formed and the processes which have changed the chemical nature since the origin (solar wind, planetary magnetospheres, cosmic ray exposure, photolysis, chemical reactions), a detailed investigation of the physicochemical mechanisms altering the pristine environment is of paramount importance to grasp the contemporary composition. Once these underlying processes have been unraveled, we can identify those molecules, which belonged to the nascent setting, distinguish molecular species synthesized in a later stage, and predict the imminent chemical evolution of, for instance, molecular clouds. Laboratory experiments under controlled physicochemical conditions (temperature, pressure, chemical composition, high energy components) present ideal tools for simulating the chemical evolution of interstellar and Solar System environments. Here, laboratory experiments can predict where and how (reaction mechanisms; chemicals necessary) in extraterrestrial environments and in the interstellar medium complex, carbon bearing molecules can be formed on interstellar grains and in the gas phase. This paper overviews the experimental setups utilized in our laboratory to mimic the chemical processing of gas phase and solid state (ices) environments. These are a crossed molecular beams machine (3) and a surface scattering setup (4). We also present typical results of each setup (formation of amino acids, aldehydes, epoxides; synthesis of hydrogen terminated carbon chains as precursors to complex PAHs and to carbonaceous dust grains in general; nitriles as precursor to amino acids).

Electrohydrodynamic coalescence of droplets using an embedded potential flow model

NASA Astrophysics Data System (ADS)

Garzon, M.; Gray, L. J.; Sethian, J. A.

2018-03-01

The coalescence, and subsequent satellite formation, of two inviscid droplets is studied numerically. The initial drops are taken to be of equal and different sizes, and simulations have been carried out with and without the presence of an electrical field. The main computational challenge is the tracking of a free surface that changes topology. Coupling level set and boundary integral methods with an embedded potential flow model, we seamlessly compute through these singular events. As a consequence, the various coalescence modes that appear depending upon the relative ratio of the parent droplets can be studied. Computations of first stage pinch-off, second stage pinch-off, and complete engulfment are analyzed and compared to recent numerical studies and laboratory experiments. Specifically, we study the evolution of bridge radii and the related scaling laws, the minimum drop radii evolution from coalescence to satellite pinch-off, satellite sizes, and the upward stretching of the near cylindrical protrusion at the droplet top. Clear evidence of partial coalescence self-similarity is presented for parent droplet ratios between 1.66 and 4. This has been possible due to the fact that computational initial conditions only depend upon the mother droplet size, in contrast with laboratory experiments where the difficulty in establishing the same initial physical configuration is well known. The presence of electric forces changes the coalescence patterns, and it is possible to control the satellite droplet size by tuning the electrical field intensity. All of the numerical results are in very good agreement with recent laboratory experiments for water droplet coalescence.

Evolution, Energy Landscapes and the Paradoxes of Protein Folding

PubMed Central

Wolynes, Peter G.

2014-01-01

Protein folding has been viewed as a difficult problem of molecular self-organization. The search problem involved in folding however has been simplified through the evolution of folding energy landscapes that are funneled. The funnel hypothesis can be quantified using energy landscape theory based on the minimal frustration principle. Strong quantitative predictions that follow from energy landscape theory have been widely confirmed both through laboratory folding experiments and from detailed simulations. Energy landscape ideas also have allowed successful protein structure prediction algorithms to be developed. The selection constraint of having funneled folding landscapes has left its imprint on the sequences of existing protein structural families. Quantitative analysis of co-evolution patterns allows us to infer the statistical characteristics of the folding landscape. These turn out to be consistent with what has been obtained from laboratory physicochemical folding experiments signalling a beautiful confluence of genomics and chemical physics. PMID:25530262

Investigating Evolutionary Biology in the Laboratory.

ERIC Educational Resources Information Center

McComas, William F., Ed.

This document presents a collection of useful laboratory-based activities for teaching about evolution. Some of the activities in this monograph are previously unpublished exercises, some are new versions of well-known labs, a few make useful classroom demonstrations, and several require somewhat sophisticated equipment. As a group, the activities…

Evolution of a residue laboratory network and the management tools for monitoring its performance.

PubMed

Lins, E S; Conceição, E S; Mauricio, A De Q

2012-01-01

Since 2005 the National Residue & Contaminants Control Plan (NRCCP) in Brazil has been considerably enhanced, increasing the number of samples, substances and species monitored, and also the analytical detection capability. The Brazilian laboratory network was forced to improve its quality standards in order to comply with the NRCP's own evolution. Many aspects such as the limits of quantification (LOQs), the quality management systems within the laboratories and appropriate method validation are in continuous improvement, generating new scenarios and demands. Thus, efficient management mechanisms for monitoring network performance and its adherence to the established goals and guidelines are required. Performance indicators associated to computerised information systems arise as a powerful tool to monitor the laboratories' activity, making use of different parameters to describe this activity on a day-to-day basis. One of these parameters is related to turnaround times, and this factor is highly affected by the way each laboratory organises its management system, as well as the regulatory requirements. In this paper a global view is presented of the turnaround times related to the type of analysis, laboratory, number of samples per year, type of matrix, country region and period of the year, all these data being collected from a computerised system called SISRES. This information gives a solid background to management measures aiming at the improvement of the service offered by the laboratory network.

Exploring Hydrogen Evolution and the Overpotential

ERIC Educational Resources Information Center

Lyon, Yana A.; Roberts, Adrienne A.; McMillin, David R.

2015-01-01

The laboratory experiment described provides insight into the energetics of hydrogen evolution at an electrode as well as the intrinsic barrier that typically impedes reaction. In the course of the exercise, students find that Sn(s) is thermodynamically capable of combining with protons to form hydrogen, but that the direct reaction occurs at a…

Catalyzing curriculum evolution in graduate science education.

PubMed

Gutlerner, Johanna L; Van Vactor, David

2013-05-09

Strategies in life science graduate education must evolve in order to train a modern workforce capable of integrative solutions to challenging problems. Our institution has catalyzed such evolution through building a postdoctoral Curriculum Fellows Program that provides a collaborative and scholarly education laboratory for innovation in graduate training. Copyright © 2013 Elsevier Inc. All rights reserved.

The Evolution of Frequency Distributions: Relating Regularization to Inductive Biases through Iterated Learning

ERIC Educational Resources Information Center

Reali, Florencia; Griffiths, Thomas L.

2009-01-01

The regularization of linguistic structures by learners has played a key role in arguments for strong innate constraints on language acquisition, and has important implications for language evolution. However, relating the inductive biases of learners to regularization behavior in laboratory tasks can be challenging without a formal model. In this…

Cometary Materials Originating from Interstellar Ices: Clues from Laboratory Experiments

NASA Astrophysics Data System (ADS)

Fresneau, A.; Abou Mrad, N.; d'Hendecourt, L. LS; Duvernay, F.; Flandinet, L.; Orthous-Daunay, F.-R.; Vuitton, V.; Thissen, R.; Chiavassa, T.; Danger, G.

2017-03-01

We use laboratory experiments to derive information on the chemistry occurring during the evolution of astrophysical ices from dense molecular clouds to interplanetary objects. Through a new strategy that consists of coupling very high resolution mass spectrometry and infrared spectroscopy (FT-IR), we investigate the molecular content of the organic residues synthesized from different initial ice compositions. We also obtain information on the evolution of the soluble part of the residues after their over-irradiation. The results give insight into the role of water ice as a trapping and diluting agent during the chemical evolution. They also give information about the importance of the amount of ammonia in such ices, particularly regarding its competition with the carbon chemistry. All of these results allow us to build a first mapping of the evolution of soluble organic matter based on its chemical and physical history. Furthermore, our results suggest that interstellar ices should lead to organic materials enriched in heteroatoms that present similarities with cometary materials but strongly differ from meteoritic organic material, especially in their C/N ratios.

Biosensor-driven adaptive laboratory evolution of l-valine production in Corynebacterium glutamicum.

PubMed

Mahr, Regina; Gätgens, Cornelia; Gätgens, Jochem; Polen, Tino; Kalinowski, Jörn; Frunzke, Julia

2015-11-01

Adaptive laboratory evolution has proven a valuable strategy for metabolic engineering. Here, we established an experimental evolution approach for improving microbial metabolite production by imposing an artificial selective pressure on the fluorescent output of a biosensor using fluorescence-activated cell sorting. Cells showing the highest fluorescent output were iteratively isolated and (re-)cultivated. The L-valine producer Corynebacterium glutamicum ΔaceE was equipped with an L-valine-responsive sensor based on the transcriptional regulator Lrp of C. glutamicum. Evolved strains featured a significantly higher growth rate, increased L-valine titers (~25%) and a 3-4-fold reduction of by-product formation. Genome sequencing resulted in the identification of a loss-of-function mutation (UreD-E188*) in the gene ureD (urease accessory protein), which was shown to increase L-valine production by up to 100%. Furthermore, decreased L-alanine formation was attributed to a mutation in the global regulator GlxR. These results emphasize biosensor-driven evolution as a straightforward approach to improve growth and productivity of microbial production strains. Copyright © 2015 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Understanding the Effects of Collisional Evolution and Spacecraft Impact Experiments on Comets and Asteroids

NASA Technical Reports Server (NTRS)

Lederer, S.M.; Jensen, E.A.; Fane, M.; Smith, D.C.; Holmes, J.; Keller, L.P.; Lindsay, S.S.; Wooden, D.H.; Whizin, A.; Cintala, M.J.;

Evolution of catalytic RNA in the laboratory

NASA Technical Reports Server (NTRS)

Joyce, Gerald F.

1992-01-01

We are interested in the biochemistry of existing RNA enzymes and in the development of RNA enzymes with novel catalytic function. The focal point of our research program has been the design and operation of a laboratory system for the controlled evolution of catalytic RNA. This system serves as working model of RNA-based life and can be used to explore the catalytic potential of RNA. Evolution requires the integration of three chemical processes: amplification, mutation, and selection. Amplification results in additional copies of the genetic material. Mutation operates at the level of genotype to introduce variability, this variability in turn being expressed as a range of phenotypes. Selection operates at the level of phenotype to reduce variability by excluding those individuals that do not conform to the prevailing fitness criteria. These three processes must be linked so that only the selected individuals are amplified, subject to mutational error, to produce a progeny distribution of mutant individuals. We devised techniques for the amplification, mutation, and selection of catalytic RNA, all of which can be performed rapidly in vitro within a single reaction vessel. We integrated these techniques in such a way that they can be performed iteratively and routinely. This allowed us to conduct evolution experiments in response to artificially-imposed selection constraints. Our objective was to develop novel RNA enzymes by altering the selection constraints in a controlled manner. In this way we were able to expand the catalytic repertoire of RNA. Our long-range objective is to develop an RNA enzyme with RNA replicase activity. If such an enzyme had the ability to produce additional copies of itself, then RNA evolution would operate autonomously and the origin of life will have been realized in the laboratory.

A Search for Binary Systems in the Magellanic Clouds

NASA Astrophysics Data System (ADS)

Brown, Cody; Nidever, David L.

2018-06-01

The Large and Small Magellanic Clouds are two of the closest dwarf galaxies to our Milky Way and offer an excellent laboratory to study the evolution of galaxies. The close proximity of these galaxies provide a chance to study individual stars in detail and learn about stellar properties and galactic formation of the Clouds. The Apache Point Observatory Galactic Evolution Experiment (APOGEE), part of the SDSS-IV, has gathered high quality, multi-epoch, spectroscopic data on a multitude of stars in the Magellanic Clouds. The time-series data can be used to detect and characterize binary stars and make the first spectroscopic measurements of the field binary fraction of the Clouds. I will present preliminary results from this project.

Convergent Metabolic Specialization through Distinct Evolutionary Paths in Pseudomonas aeruginosa.

PubMed

La Rosa, Ruggero; Johansen, Helle Krogh; Molin, Søren

2018-04-10

Evolution by natural selection under complex and dynamic environmental conditions occurs through intricate and often counterintuitive trajectories affecting many genes and metabolic solutions. To study short- and long-term evolution of bacteria in vivo , we used the natural model system of cystic fibrosis (CF) infection. In this work, we investigated how and through which trajectories evolution of Pseudomonas aeruginosa occurs when migrating from the environment to the airways of CF patients, and specifically, we determined reduction of growth rate and metabolic specialization as signatures of adaptive evolution. We show that central metabolic pathways of three distinct Pseudomonas aeruginosa lineages coevolving within the same environment become restructured at the cost of versatility during long-term colonization. Cell physiology changes from naive to adapted phenotypes resulted in (i) alteration of growth potential that particularly converged to a slow-growth phenotype, (ii) alteration of nutritional requirements due to auxotrophy, (iii) tailored preference for carbon source assimilation from CF sputum, (iv) reduced arginine and pyruvate fermentation processes, and (v) increased oxygen requirements. Interestingly, although convergence was evidenced at the phenotypic level of metabolic specialization, comparative genomics disclosed diverse mutational patterns underlying the different evolutionary trajectories. Therefore, distinct combinations of genetic and regulatory changes converge to common metabolic adaptive trajectories leading to within-host metabolic specialization. This study gives new insight into bacterial metabolic evolution during long-term colonization of a new environmental niche. IMPORTANCE Only a few examples of real-time evolutionary investigations in environments outside the laboratory are described in the scientific literature. Remembering that biological evolution, as it has progressed in nature, has not taken place in test tubes, it is not surprising that conclusions from our investigations of bacterial evolution in the CF model system are different from what has been concluded from laboratory experiments. The analysis presented here of the metabolic and regulatory driving forces leading to successful adaptation to a new environment provides an important insight into the role of metabolism and its regulatory mechanisms for successful adaptation of microorganisms in dynamic and complex environments. Understanding the trajectories of adaptation, as well as the mechanisms behind slow growth and rewiring of regulatory and metabolic networks, is a key element to understand the adaptive robustness and evolvability of bacteria in the process of increasing their in vivo fitness when conquering new territories. Copyright © 2018 La Rosa et al.

Impact of RNA Degradation on Viral Diagnosis: An Understated but Essential Step for the Successful Establishment of a Diagnosis Network

PubMed Central

Relova, Damarys; Acevedo, Ana M.; Coronado, Liani; Perera, Carmen L.

2018-01-01

The current global conditions, which include intensive globalization, climate changes, and viral evolution among other factors, have led to an increased emergence of viruses and new viral diseases; RNA viruses are key drivers of this evolution. Laboratory networks that are linked to central reference laboratories are required to conduct both active and passive environmental surveillance of this complicated global viral environment. These tasks require a continuous exchange of strains or field samples between different diagnostic laboratories. The shipment of these samples on dry ice represents both a biological hazard and a general health risk. Moreover, the requirement to ship on dry ice could be hampered by high costs, particularly in underdeveloped countries or regions located far from each other. To solve these issues, the shipment of RNA isolated from viral suspensions or directly from field samples could be a useful way to share viral genetic material. However, extracted RNA stored in aqueous solutions, even at −70 °C, is highly prone to degradation. The current study evaluated different RNA storage conditions for safety and feasibility for future use in molecular diagnostics. The in vitro RNA-transcripts obtained from an inactivated highly pathogenic avian influenza (HPAI) H5N1 virus was used as a model. The role of secondary structures in the protection of the RNA was also explored. Of the conditions evaluated, the dry pellet matrix was best able to protect viral RNA under extreme storage conditions. This method is safe, cost-effective and assures the integrity of RNA samples for reliable molecular diagnosis. This study aligns with the globally significant “Global One Health” paradigm, especially with respect to the diagnosis of emerging diseases that require confirmation by reference laboratories. PMID:29415432

Evolution of secondary-phase precipitates during annealing of the 12Kh18N9T steel irradiated with neutrons to a dose of 5 DPA

NASA Astrophysics Data System (ADS)

Tsai, K. V.; Maksimkin, O. P.; Turubarova, L. G.

2007-03-01

The formation and evolution of thermally-induced secondary precipitates in an austenitic stainless steel 12Kh18N9T irradiated in the core of a laboratory reactor VVR-K to a dose of 5 dpa and subjected to post-radiation isochronous annealings for 1 h in a temperature range from 450 to 1050°C have been studied using transmission electron microscopy (TEM) and microhardness measurements. It has been shown that the formation of stitch (secondary) titanium carbides and M 23C6 carbides at grain and twin boundaries after annealing at 1050°C is preceded by a complex evolution of fineparticles of secondary phases (titanium carbides and nitrides) precipitated at dislocation loops and dislocations during annealing at temperatures above 750°C.

High-order hydrodynamic algorithms for exascale computing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Morgan, Nathaniel Ray

Hydrodynamic algorithms are at the core of many laboratory missions ranging from simulating ICF implosions to climate modeling. The hydrodynamic algorithms commonly employed at the laboratory and in industry (1) typically lack requisite accuracy for complex multi- material vortical flows and (2) are not well suited for exascale computing due to poor data locality and poor FLOP/memory ratios. Exascale computing requires advances in both computer science and numerical algorithms. We propose to research the second requirement and create a new high-order hydrodynamic algorithm that has superior accuracy, excellent data locality, and excellent FLOP/memory ratios. This proposal will impact a broadmore » range of research areas including numerical theory, discrete mathematics, vorticity evolution, gas dynamics, interface instability evolution, turbulent flows, fluid dynamics and shock driven flows. If successful, the proposed research has the potential to radically transform simulation capabilities and help position the laboratory for computing at the exascale.« less

Generation and Evolution of High-Mach-Number Laser-Driven Magnetized Collisionless Shocks in the Laboratory.

PubMed

Schaeffer, D B; Fox, W; Haberberger, D; Fiksel, G; Bhattacharjee, A; Barnak, D H; Hu, S X; Germaschewski, K

2017-07-14

We present the first laboratory generation of high-Mach-number magnetized collisionless shocks created through the interaction of an expanding laser-driven plasma with a magnetized ambient plasma. Time-resolved, two-dimensional imaging of plasma density and magnetic fields shows the formation and evolution of a supercritical shock propagating at magnetosonic Mach number M_{ms}≈12. Particle-in-cell simulations constrained by experimental data further detail the shock formation and separate dynamics of the multi-ion-species ambient plasma. The results show that the shocks form on time scales as fast as one gyroperiod, aided by the efficient coupling of energy, and the generation of a magnetic barrier between the piston and ambient ions. The development of this experimental platform complements present remote sensing and spacecraft observations, and opens the way for controlled laboratory investigations of high-Mach number collisionless shocks, including the mechanisms and efficiency of particle acceleration.

Evolution of aerosol downwind of a major highway

NASA Astrophysics Data System (ADS)

Liggio, J.; Staebler, R. M.; Brook, J.; Li, S.; Vlasenko, A. L.; Sjostedt, S. J.; Gordon, M.; Makar, P.; Mihele, C.; Evans, G. J.; Jeong, C.; Wentzell, J. J.; Lu, G.; Lee, P.

2010-12-01

Primary aerosol from traffic emissions can have a considerable impact local and regional scale air quality. In order to assess the effect of these emissions and of future emissions scenarios, air quality models are required which utilize emissions representative of real world conditions. Often, the emissions processing systems which provide emissions input for the air quality models rely on laboratory testing of individual vehicles under non-ambient conditions. However, on the sub-grid scale particle evolution may lead to changes in the primary emitted size distribution and gas-particle partitioning that are not properly considered when the emissions are ‘instantly mixed’ within the grid volume. The affect of this modeling convention on model results is not well understood. In particular, changes in organic gas/particle partitioning may result in particle evaporation or condensation onto pre-existing aerosol. The result is a change in the particle distribution and/or an increase in the organic mass available for subsequent gas-phase oxidation. These effects may be missing from air-quality models, and a careful analysis of field data is necessary to quantify their impact. A study of the sub-grid evolution of aerosols (FEVER; Fast Evolution of Vehicle Emissions from Roadways) was conducted in the Toronto area in the summer of 2010. The study included mobile measurements of particle size distributions with a Fast mobility particle sizer (FMPS), aerosol composition with an Aerodyne aerosol mass spectrometer (AMS), black carbon (SP2, PA, LII), VOCs (PTR-MS) and other trace gases. The mobile laboratory was used to measure the concentration gradient of the emissions at perpendicular distances from the highway as well as the physical and chemical evolution of the aerosol. Stationary sites at perpendicular distances and upwind from the highway also monitored the particle size distribution. In addition, sonic anemometers mounted on the mobile lab provided measurements of turbulent dispersion as a function of distance from the highway, and a traffic camera was used to determine traffic density, composition and speed. These measurements differ from previous studies in that turbulence is measured under realistic conditions and hence the relationship of the aerosol evolution to atmospheric stability and mixing will also be quantified. Preliminary results suggest that aerosol size and composition does change on the sub-grid scale, and sub-grid scale parameterizations of turbulence and particle chemistry should be included in models to accurately represent these effects.

The PROCESS experiment: amino and carboxylic acids under Mars-like surface UV radiation conditions in low-earth orbit.

PubMed

Noblet, Audrey; Stalport, Fabien; Guan, Yuan Yong; Poch, Olivier; Coll, Patrice; Szopa, Cyril; Cloix, Mégane; Macari, Frédérique; Raulin, Francois; Chaput, Didier; Cottin, Hervé

2012-05-01

The search for organic molecules at the surface of Mars is a top priority of the next Mars exploration space missions: Mars Science Laboratory (NASA) and ExoMars (ESA). The detection of organic matter could provide information about the presence of a prebiotic chemistry or even biological activity on this planet. Therefore, a key step in interpretation of future data collected by these missions is to understand the preservation of organic matter in the martian environment. Several laboratory experiments have been devoted to quantifying and qualifying the evolution of organic molecules under simulated environmental conditions of Mars. However, these laboratory simulations are limited, and one major constraint is the reproduction of the UV spectrum that reaches the surface of Mars. As part of the PROCESS experiment of the European EXPOSE-E mission on board the International Space Station, a study was performed on the photodegradation of organics under filtered extraterrestrial solar electromagnetic radiation that mimics Mars-like surface UV radiation conditions. Glycine, serine, phthalic acid, phthalic acid in the presence of a mineral phase, and mellitic acid were exposed to these conditions for 1.5 years, and their evolution was determined by Fourier transform infrared spectroscopy after their retrieval. The results were compared with data from laboratory experiments. A 1.5-year exposure to Mars-like surface UV radiation conditions in space resulted in complete degradation of the organic compounds. Half-lives between 50 and 150 h for martian surface conditions were calculated from both laboratory and low-Earth orbit experiments. The results highlight that none of those organics are stable under low-Earth orbit solar UV radiation conditions.

Hidden Milky Way star clusters hosting Wolf-Rayet stars

NASA Astrophysics Data System (ADS)

Kurtev, R.; Borissova, J.; Ivanov, V. D.; Georgiev, L.

2009-05-01

A noticeable fraction of the hidden young star clusters contain WR and O stars providing us with unique laboratories to study the evolution of these rare objects and their maternity places. We are reporting the reddening, the distance and age of two new members of the family of massive young Galactic clusters, hosting WR stars - Glimpse 23 and Glimpse 30.

Globular Cluster Systems in Interacting Galaxies

NASA Astrophysics Data System (ADS)

Zepf, S.; Murdin, P.

2000-11-01

GLOBULAR CLUSTERS are dynamically bound and dense collections of large numbers of coeval stars. Typical globular clusters have roughly one million stars within a radius of a few parsecs. They are also usually close to spherical, hence the name globular. By virtue of their rich, isolated population of stars they provide an important laboratory for studies of STELLAR EVOLUTION. Moreover, because of...

Cooperation induces other cooperation: Fruiting bodies promote the evolution of macrocysts in Dictyostelium discoideum.

PubMed

Shibasaki, Shota; Shirokawa, Yuka; Shimada, Masakazu

2017-05-21

Biological studies of the evolution of cooperation are challenging because this process is vulnerable to cheating. Many mechanisms, including kin discrimination, spatial structure, or by-products of self-interested behaviors, can explain this evolution. Here we propose that the evolution of cooperation can be induced by other cooperation. To test this idea, we used a model organism Dictyostelium discoideum because it exhibits two cooperative dormant phases, the fruiting body and the macrocyst. In both phases, the same chemoattractant, cyclic AMP (cAMP), is used to collect cells. This common feature led us to hypothesize that the evolution of macrocyst formation would be induced by coexistence with fruiting bodies. Before forming a mathematical model, we confirmed that macrocysts coexisted with fruiting bodies, at least under laboratory conditions. Next, we analyzed our evolutionary game theory-based model to investigate whether coexistence with fruiting bodies would stabilize macrocyst formation. The model suggests that macrocyst formation represents an evolutionarily stable strategy and a global invader strategy under this coexistence, but is unstable if the model ignores the fruiting body formation. This result indicates that the evolution of macrocyst formation and maintenance is attributable to coexistence with fruiting bodies. Therefore, macrocyst evolution can be considered as an example of evolution of cooperation induced by other cooperation. Copyright © 2017 Elsevier Ltd. All rights reserved.

On The Importance of Connecting Laboratory Measurements of Ice Crystal Growth with Model Parameterizations: Predicting Ice Particle Properties

NASA Astrophysics Data System (ADS)

Harrington, J. Y.

2017-12-01

Parameterizing the growth of ice particles in numerical models is at an interesting cross-roads. Most parameterizations developed in the past, including some that I have developed, parse model ice into numerous categories based primarily on the growth mode of the particle. Models routinely possess smaller ice, snow crystals, aggregates, graupel, and hail. The snow and ice categories in some models are further split into subcategories to account for the various shapes of ice. There has been a relatively recent shift towards a new class of microphysical models that predict the properties of ice particles instead of using multiple categories and subcategories. Particle property models predict the physical characteristics of ice, such as aspect ratio, maximum dimension, effective density, rime density, effective area, and so forth. These models are attractive in the sense that particle characteristics evolve naturally in time and space without the need for numerous (and somewhat artificial) transitions among pre-defined classes. However, particle property models often require fundamental parameters that are typically derived from laboratory measurements. For instance, the evolution of particle shape during vapor depositional growth requires knowledge of the growth efficiencies for the various axis of the crystals, which in turn depends on surface parameters that can only be determined in the laboratory. The evolution of particle shapes and density during riming, aggregation, and melting require data on the redistribution of mass across a crystals axis as that crystal collects water drops, ice crystals, or melts. Predicting the evolution of particle properties based on laboratory-determined parameters has a substantial influence on the evolution of some cloud systems. Radiatively-driven cirrus clouds show a broader range of competition between heterogeneous nucleation and homogeneous freezing when ice crystal properties are predicted. Even strongly convective squall lines show a substantial influence to predicted particle properties: The more natural evolution of ice crystals during riming produces graupel-like particles with size and fall-speeds required for the formation of a classic transition zone and extended stratiform precipitation region.

Male Mating Success: Preference or Prowess? Investigating Sexual Selection in the Laboratory Using "Drosophila melanogaster"

ERIC Educational Resources Information Center

Coleman, Seth; Jensen, Jeffrey

2007-01-01

Sexual selection is the primary force affecting the evolution of the elaborate sexual displays common in animals, yet sexual selection experiments are largely absent from introductory biology laboratories. Here we describe the rationale, methodology, and results of several experiments using "Drosophila melanogaster" to demonstrate sexual selection…

Connecting QGP-Heavy Ion Physics to the Early Universe

NASA Astrophysics Data System (ADS)

Rafelski, Johann

2013-10-01

We discuss properties and evolution of quark-gluon plasma in the early Universe and compare to laboratory heavy ion experiments. We describe how matter and antimatter emerged from a primordial soup of quarks and gluons. We focus our discussion on similarities and differences between the early Universe and the laboratory experiments.

Effect of relative humidity on soot - secondary organic aerosol mixing: A case study from the Soot Aerosol Aging Study (PNNL-SAAS)

NASA Astrophysics Data System (ADS)

Sharma, N.; China, S.; Zaveri, R. A.; Shilling, J. E.; Pekour, M. S.; Liu, S.; Aiken, A. C.; Dubey, M. K.; Wilson, J. M.; Zelenyuk, A.; OBrien, R. E.; Moffet, R.; Gilles, M. K.; Gourihar, K.; Chand, D.; Sedlacek, A. J., III; Subramanian, R.; Onasch, T. B.; Laskin, A.; Mazzoleni, C.

2014-12-01

Atmospheric processing of fresh soot particles emitted by anthropogenic as well as natural sources alters their physical and chemical properties. For example, fresh and aged soot particles interact differently with incident solar radiation, resulting in different overall radiation budgets. Varying atmospheric chemical and meteorological conditions can result in complex soot mixing states. The Soot Aerosol Aging Study (SAAS) was conducted at the Pacific Northwest National Laboratory in November 2013 and January 2014 as a step towards understanding the evolution of mixing state of soot and its impact on climate-relevant properties. Aging experiments on diesel soot were carried out in a controlled laboratory chamber, and the effects of condensation and coagulation processes were systematically explored in separate sets of experiments. In addition to online measurement of aerosol properties, aerosol samples were collected for offline single particle analysis to investigate the evolution of the morphology, elemental composition and fine structure of sample particles from different experiments. Condensation experiments focused on the formation of α-pinene secondary organic aerosol on diesel soot aerosol seeds. Experiments were conducted to study the aging of soot under dry (RH < 2%) and humid conditions (RH ~ 80%). We present an analysis of the morphology of soot, its evolution, and its correlation with optical properties, as the condensation of α-pinene SOA is carried out for the two different RH conditions. The analysis was performed by using scanning electron microscopy, transmission electron microscopy, scanning transmission x-ray microscopy and atomic force microscopy for single particle characterization. In addition, particle size, mass, composition, shape, and density were characterized in-situ, as a function of organics condensed on soot seeds, using single particle mass spectrometer.

Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

PubMed Central

Oud, Bart; Guadalupe-Medina, Victor; Nijkamp, Jurgen F.; de Ridder, Dick; Pronk, Jack T.; van Maris, Antonius J. A.; Daran, Jean-Marc

2013-01-01

Laboratory evolution of the yeast Saccharomyces cerevisiae in bioreactor batch cultures yielded variants that grow as multicellular, fast-sedimenting clusters. Knowledge of the molecular basis of this phenomenon may contribute to the understanding of natural evolution of multicellularity and to manipulating cell sedimentation in laboratory and industrial applications of S. cerevisiae. Multicellular, fast-sedimenting lineages obtained from a haploid S. cerevisiae strain in two independent evolution experiments were analyzed by whole genome resequencing. The two evolved cell lines showed different frameshift mutations in a stretch of eight adenosines in ACE2, which encodes a transcriptional regulator involved in cell cycle control and mother-daughter cell separation. Introduction of the two ace2 mutant alleles into the haploid parental strain led to slow-sedimenting cell clusters that consisted of just a few cells, thus representing only a partial reconstruction of the evolved phenotype. In addition to single-nucleotide mutations, a whole-genome duplication event had occurred in both evolved multicellular strains. Construction of a diploid reference strain with two mutant ace2 alleles led to complete reconstruction of the multicellular-fast sedimenting phenotype. This study shows that whole-genome duplication and a frameshift mutation in ACE2 are sufficient to generate a fast-sedimenting, multicellular phenotype in S. cerevisiae. The nature of the ace2 mutations and their occurrence in two independent evolution experiments encompassing fewer than 500 generations of selective growth suggest that switching between unicellular and multicellular phenotypes may be relevant for competitiveness of S. cerevisiae in natural environments. PMID:24145419

Automation in clinical biochemistry: core, peripheral, STAT, and specialist laboratories in Australia.

PubMed

Streitberg, George S; Angel, Lyndall; Sikaris, Kenneth A; Bwititi, Phillip T

2012-10-01

Pathology has developed substantially since the 1990s with the introduction of total laboratory automation (TLA), in response to workloads and the need to improve quality. TLA has enhanced core laboratories, which evolved from discipline-based laboratories. Work practices have changed, with central reception now loading samples onto the Inlet module of the TLA. It is important to continually appraise technology. This study looked at the impact of technology using a self-administered survey to seniors in clinical biochemistry in NATA GX/GY-classified laboratories in Australia. The responses were yes, no, or not applicable and are expressed as percentages of responses. Some of the questions sourced for descriptive answers. Eighty-one laboratories responded, and the locations were 63%, 33%, and 4% in capital cities, regional cities, and country towns, respectively. Forty-two percent were public and 58% private. Clinical biochemistry was in all core laboratories of various sizes, and most performed up to 20 tests per sample. Thirty percent of the 121 surveyed laboratories had plans to install an automated line. Fifty-eight percent had hematology and biochemistry instrumentations in their peripheral laboratory, and 16% had a STAT laboratory on the same site as the core laboratory. There were varied instruments in specialist laboratories, and analyzers with embedded computers were in all laboratories. Medium and large laboratories had workstations with integrated instruments, and some large laboratories had TLA. Technology evolution and rising demand for pathology services make it imperative for laboratories to embrace such changes and reorganize the laboratories to take into account point-of-care testing and the efficiencies of core laboratories and TLA.

Mass Loss during Late Stellar Evolution

NASA Astrophysics Data System (ADS)

Olofsson, Hans

1999-10-01

Extensive post-main sequence mass loss occurs for low- and intermediate-mass (up to ~8MSun) stars on the asymptotic giant branch (AGB), and for the higher-mass stars during their red supergiant evolution. These winds have a profound effect on the evolution of the stars, as well as for the enrichment of the interstellar medium with heavy elements and grain particles. The mass loss on the AGB is the by far most well studied, but a good deal of the basic processes are still not understood or cannot be described in a proper quantitative way, e.g., the mass loss mechanism itself. Furthermore, these objects provide us with fascinating systems, where intricate interplays between various physical and chemical processes take place, and their relative simplicity in terms of geometry, density distribution, and kinematics makes them excellent astrophysical laboratories. In this review we will concentrate on those aspects of AGB mass loss that are particularly well studied using a large millimetre array.

Natural history collections as windows on evolutionary processes

PubMed Central

Holmes, Michael W.; Hammond, Talisin T.; Wogan, Guinevere O.U.; Walsh, Rachel E.; LaBarbera, Katie; Wommack, Elizabeth A.; Martins, Felipe M.; Crawford, Jeremy C.; Mack, Katya L.; Bloch, Luke M.; Nachman, Michael W.

2016-01-01

Natural history collections provide an immense record of biodiversity on Earth. These repositories have traditionally been used to address fundamental questions in biogeography, systematics, and conservation. However, they also hold the potential for studying evolution directly. While some of the best direct observations of evolution have come from long-term field studies or from experimental studies in the lab, natural history collections are providing new insights into evolutionary change in natural populations. By comparing phenotypic and genotypic changes in populations through time, natural history collections provide a window into evolutionary processes. Recent studies utilizing this approach have revealed some dramatic instances of phenotypic change over short time scales in response to presumably strong selective pressures. In some instances evolutionary change can be paired with environmental change, providing a context for potential selective forces. Moreover, in a few cases, the genetic basis of phenotypic change is well understood, allowing for insight into adaptive change at multiple levels. These kinds of studies open the door to a wide range of previously intractable questions by enabling the study of evolution through time, analogous to experimental studies in the laboratory, but amenable to a diversity of species over longer timescales in natural populations. PMID:26757135

Spectroscopic studies of non-volatile residue formed by photochemistry of solid C4N2: A model of condensed aerosol formation on Titan

NASA Astrophysics Data System (ADS)

Couturier-Tamburelli, Isabelle; Gudipati, Murthy S.; Lignell, Antti; Jacovi, Ronen; Piétri, Nathalie

2014-05-01

Following our recent communication (Gudipati, M.S. et al. [2013]. Nat. Commun. 4, 1648. http://dx.doi.org/10.1038/ncomms2649) on the discovery of condensed-phase non-volatile polymeric material with similar spectral features as tholins, we present here a comprehensive spectroscopic study of photochemical formation of polymeric material from condensed dicyanoacetylene (C4N2) ice films. C4N2 is chosen as starting material for the laboratory simulations because of the detection of this and similar molecules (nitriles and cyanoacetylenes) in Titan’s atmosphere. UV-Vis and infrared spectra obtained during long-wavelength (>300 nm) photon irradiation and subsequent warming of the ice films are used to analyze changes in C4N2 ice, evolution of tholins, and derive photopolymerization mechanisms. Our data analysis revealed that many processes occur during the photolysis of condensed Titan’s aerosol analogs, including isomerization and polymerization leading to the formation of long-chain as well as aromatic cyclic polymer molecules. In the light of tremendous new data from the Cassini mission on the seasonal variations in Titan’s atmosphere, our laboratory study and its results provide fresh insight into the formation and evolution of aerosols and haze in Titan’s atmosphere.

Simulation of the 3-D Evolution of Electron Scale Magnetic Reconnection - Motivated by Laboratory Experiments Predictions for MMS

NASA Astrophysics Data System (ADS)

Buechner, J.; Jain, N.; Sharma, A.

2013-12-01

The four s/c of the Magnetospheric Multiscale (MMS) mission, to be launched in 2014, will use the Earth's magnetosphere as a laboratory to study the microphysics of three fundamental plasma processes. One of them is magnetic reconnection, an essentially multi-scale process. While laboratory experiments and past theoretical investigations have shown that important processes necessary to understand magnetic reconnection take place at electron scales the MMS mission for the first time will be able to resolve these scales by in space observations. For the measurement strategy of MMS it is important to make specific predictions of the behavior of current sheets with a thickness of the order of the electron skin depth which play an important role in the evolution of collisionless magnetic reconnection. Since these processes are highly nonlinear and non-local numerical simulation is needed to specify the current sheet evolution. Here we present new results about the nonlinear evolution of electron-scale current sheets starting from the linear stage and using 3-D electron-magnetohydrodynamic (EMHD) simulations. The growth rates of the simulated instabilities compared well with the growth rates obtained from linear theory. Mechanisms and conditions of the formation of flux ropes and of current filamentation will be discussed in comparison with the results of fully kinetic simulations. In 3D the X- and O-point configurations of the magnetic field formed in reconnection planes alternate along the out-of-reconnection-plane direction with the wavelength of the unstable mode. In the presence of multiple reconnection sites, the out-of-plane magnetic field can develop nested structure of quadrupoles in reconnection planes, similar to the 2-D case, but now with variations in the out-of-plane direction. The structures of the electron flow and magnetic field in 3-D simulations will be compared with those in 2-D simulations to discriminate the essentially 3D features. We also discuss the influence of guide fields, as in the magnetopause case and show how the 3-D evolution of an electron current sheet is influenced the strength of the guide field. This is unlike the 2-D case where reconnection takes place only in a plane. This work was partially funded by the Max-Planck/Princeton Center for Plasma Physics and the National Science Foundation.

Automation in the clinical microbiology laboratory.

PubMed

Novak, Susan M; Marlowe, Elizabeth M

2013-09-01

Imagine a clinical microbiology laboratory where a patient's specimens are placed on a conveyor belt and sent on an automation line for processing and plating. Technologists need only log onto a computer to visualize the images of a culture and send to a mass spectrometer for identification. Once a pathogen is identified, the system knows to send the colony for susceptibility testing. This is the future of the clinical microbiology laboratory. This article outlines the operational and staffing challenges facing clinical microbiology laboratories and the evolution of automation that is shaping the way laboratory medicine will be practiced in the future. Copyright © 2013 Elsevier Inc. All rights reserved.

Simulation of dual carbon-bromine stable isotope fractionation during 1,2-dibromoethane degradation.

PubMed

Jin, Biao; Nijenhuis, Ivonne; Rolle, Massimo

2018-06-01

We performed a model-based investigation to simultaneously predict the evolution of concentration, as well as stable carbon and bromine isotope fractionation during 1,2-dibromoethane (EDB, ethylene dibromide) transformation in a closed system. The modelling approach considers bond-cleavage mechanisms during different reactions and allows evaluating dual carbon-bromine isotopic signals for chemical and biotic reactions, including aerobic and anaerobic biological transformation, dibromoelimination by Zn(0) and alkaline hydrolysis. The proposed model allowed us to accurately simulate the evolution of concentrations and isotope data observed in a previous laboratory study and to successfully identify different reaction pathways. Furthermore, we illustrated the model capabilities in degradation scenarios involving complex reaction systems. Specifically, we examined (i) the case of sequential multistep transformation of EDB and the isotopic evolution of the parent compound, the intermediate and the reaction product and (ii) the case of parallel competing abiotic pathways of EDB transformation in alkaline solution.

Protoplanetary Dust

NASA Astrophysics Data System (ADS)

Apai, D.´niel; Lauretta, Dante S.

2014-02-01

Preface; 1. Planet formation and protoplanetary dust Daniel Apai and Dante Lauretta; 2. The origins of protoplanetary dust and the formation of accretion disks Hans-Peter Gail and Peter Hope; 3. Evolution of protoplanetary disk structures Fred Ciesla and Cornelius P. Dullemond; 4. Chemical and isotopic evolution of the solar nebula and protoplanetary disks Dmitry Semenov, Subrata Chakraborty and Mark Thiemens; 5. Laboratory studies of simple dust analogs in astrophysical environments John R. Brucato and Joseph A. Nuth III; 6. Dust composition in protoplanetaty dust Michiel Min and George Flynn; 7. Dust particle size evolution Klaus M. Pontoppidan and Adrian J. Brearly; 8. Thermal processing in protoplanetary nebulae Daniel Apai, Harold C. Connolly Jr. and Dante S. Lauretta; 9. The clearing of protoplanetary disks and of the protosolar nebula Ilaira Pascucci and Shogo Tachibana; 10. Accretion of planetesimals and the formation of rocky planets John E. Chambers, David O'Brien and Andrew M. Davis; Appendixes; Glossary; Index.

The search for and analysis of direct samples of early Solar System aqueous fluids.

PubMed

Zolensky, Michael E; Bodnar, Robert J; Yurimoto, Hisayoshi; Itoh, Shoichi; Fries, Marc; Steele, Andrew; Chan, Queenie H-S; Tsuchiyama, Akira; Kebukawa, Yoko; Ito, Motoo

2017-05-28

We describe the current state of the search for direct, surviving samples of early, inner Solar System fluids-fluid inclusions in meteorites. Meteoritic aqueous fluid inclusions are not rare, but they are very tiny and their characterization is at the state of the art for most analytical techniques. Meteoritic fluid inclusions offer us a unique opportunity to study early Solar System brines in the laboratory. Inclusion-by-inclusion analyses of the trapped fluids in carefully selected samples will, in the immediate future, provide us detailed information on the evolution of fluids as they interacted with anhydrous solid materials. Thus, real data can replace calculated fluid compositions in thermochemical calculations of the evolution of water and aqueous reactions in comets, asteroids, moons and the terrestrial planets.This article is part of the themed issue 'The origin, history and role of water in the evolution of the inner Solar System'. © 2017 The Author(s).

Acyl-homoserine lactone quorum sensing: from evolution to application.

PubMed

Schuster, Martin; Sexton, D Joseph; Diggle, Stephen P; Greenberg, E Peter

2013-01-01

Quorum sensing (QS) is a widespread process in bacteria that employs autoinducing chemical signals to coordinate diverse, often cooperative activities such as bioluminescence, biofilm formation, and exoenzyme secretion. Signaling via acyl-homoserine lactones is the paradigm for QS in Proteobacteria and is particularly well understood in the opportunistic pathogen Pseudomonas aeruginosa. Despite thirty years of mechanistic research, empirical studies have only recently addressed the benefits of QS and provided support for the traditional assumptions regarding its social nature and its role in optimizing cell-density-dependent group behaviors. QS-controlled public-goods production has served to investigate principles that explain the evolution and stability of cooperation, including kin selection, pleiotropic constraints, and metabolic prudence. With respect to medical application, appreciating social dynamics is pertinent to understanding the efficacy of QS-inhibiting drugs and the evolution of resistance. Future work will provide additional insight into the foundational assumptions of QS and relate laboratory discoveries to natural ecosystems.

The Johnson Space Center Experimental Impact Lab: Contributions Toward Understanding the Evolution of the Solar System

NASA Technical Reports Server (NTRS)

See, T. H.; Montes, R.

2012-01-01

Impact is the most common and only weathering phenomenon affecting all the planetary bodies (e.g., planets, satellites, asteroids, comets, etc.) in the solar system. NASA Johnson Space Center s Experimental Impact Laboratory (EIL) includes three accelerators that are used in support of research into the effects of impact on the formation and evolution of the solar system. They permit researchers to study a wide variety of phenomena associated with high-velocity impacts into a wide range of geologic targets and materials relevant to astrobiological studies. By studying these processes, researchers can investigate the histories and evolution of planetary bodies and the solar system as a whole. While the majority of research conducted in the EIL addresses questions involving planetary impacts, work involving spacecraft components has been performed on occasion. An example of this is the aerogel collector material flown on the Stardust spacecraft that traveled to Comet Wild-2. This capture medium was tested and flight qualified using the 5 mm Light-Gas Gun located in the EIL.

Iterated learning and the evolution of language.

PubMed

Kirby, Simon; Griffiths, Tom; Smith, Kenny

2014-10-01

Iterated learning describes the process whereby an individual learns their behaviour by exposure to another individual's behaviour, who themselves learnt it in the same way. It can be seen as a key mechanism of cultural evolution. We review various methods for understanding how behaviour is shaped by the iterated learning process: computational agent-based simulations; mathematical modelling; and laboratory experiments in humans and non-human animals. We show how this framework has been used to explain the origins of structure in language, and argue that cultural evolution must be considered alongside biological evolution in explanations of language origins. Copyright © 2014 Elsevier Ltd. All rights reserved.

SIRTF Studies of Galaxy Formation and Evolution

NASA Technical Reports Server (NTRS)

Eisenhardt, Peter

1999-01-01

The Space Infrared Telescope Facility (SIRTF) is a cornerstone of NASA's Origins program, and will complete NASA's family of Great Observatories when it is launched in December 2001. SIRTF will provide imaging with point source sensitivities ranging from a few microjanskies at 3.6 microns to several millijanskies at 160 microns, land spectroscopy of sources brighter than a millijansky over the 5 to 40 micron range. Over 75% of observing time during SIRTF's expected 5 year lifetime will be available to general investigators from the international community, with the first call for proposals in July 2000. I review SIRTF's capabilities and plans for the study of galaxy formation and evolution. This work was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under contract to the National Aeronautics and Space Administration.

A PIONIER and Incisive Look at the Interacting Binary SS Lep

NASA Astrophysics Data System (ADS)

Blind, N.; Boffin, H. M. J.; Berger, J.-P.; Lebouquin, J.-B.; Mérand, A.

2011-09-01

Symbiotic stars are excellent laboratories to study a broad range of poorly understood physical processes, such as mass loss of red giants, accretion onto compact objects, and evolution of nova-like outbursts. As their evolution is strongly influenced by the mass transfer episodes, understanding the history of these systems requires foremost to determine which process is at play: Roche lobe overflow, stellar wind accretion, or some more complex mixture of both. We report here an interferometric study of the symbiotic system SS Leporis, performed with the unique PIONIER instrument. By determining the binary orbit and revisiting the parameters of the two stars, we show that the giant does not fill its Roche lobe, and that the mass transfer most likely occurs via the accretion of an important part of the giant's wind.

Laboratory Activities to Support Student Understanding of the Molecular Mechanisms of Mutation & Natural Selection

ERIC Educational Resources Information Center

Hubler, Tina; Adams, Patti; Scammell, Jonathan

2015-01-01

The molecular basis of evolution is an important and challenging concept for students to understand. In a previous article, we provided some of the scientific background necessary to teach this topic. This article features a series of laboratory activities demonstrating that molecular events can alter the genomes of organisms. These activities are…

Ecological stress and sex evolution in soil microfungi.

PubMed Central

Grishkan, Isabella; Korol, Abraham B; Nevo, Eviatar; Wasser, Solomon P

2003-01-01

The elucidation of the origin and maintenance of sex is a major unsolved problem in evolutionary biology. A number of hypotheses have been elaborated, but the scarcity of empirical data limits further progress. During recent years, the general inclination has changed towards pluralistic models of sex evolution, due partly to an increased diversity of studied organisms. Fungi are among the most promising organisms for testing sexual causation, as demonstrated in recent laboratory experiments. However, reconciling theory and evidence necessitates critical field observations. Here, we report new estimates of the distribution of morphologically sexual and asexual soil microfungi in nature, which indicate a remarkable trend towards increased sexuality with increasing climatic stress. PMID:12590766

The nature, origin and evolution of embedded star clusters

NASA Technical Reports Server (NTRS)

Lada, Charles J.; Lada, Elizabeth A.

1991-01-01

The recent development of imaging infrared array cameras has enabled the first systematic studies of embedded protoclusters in the galaxy. Initial investigations suggest that rich embedded clusters are quite numerous and that a significant fraction of all stars formed in the galaxy may begin their lives in such stellar systems. These clusters contain extremely young stellar objects and are important laboratories for star formation research. However, observational and theoretical considerations suggest that most embedded clusters do not survive emergence from molecular clouds as bound clusters. Understanding the origin, nature, and evolution of embedded clusters requires understanding the intimate physical relation between embedded clusters and the dense molecular cloud cores from which they form.

Human Xq28 inversion polymorphism: From sex linkage to Genomics--A genetic mother lode.

PubMed

Kirby, Cait S; Kolber, Natalie; Salih Almohaidi, Asmaa M; Bierwert, Lou Ann; Saunders, Lori; Williams, Steven; Merritt, Robert

2016-01-01

An inversion polymorphism of the filamin and emerin genes at the tip of the long arm of the human X-chromosome serves as the basis of an investigative laboratory in which students learn something new about their own genomes. Long, nearly identical inverted repeats flanking the filamin and emerin genes illustrate how repetitive elements can lead to alterations in genome structure (inversions) through nonallelic homologous recombination. The near identity of the inverted repeats is an example of concerted evolution through gene conversion. While the laboratory in its entirety is designed for college level genetics courses, portions of the laboratory are appropriate for courses at other levels. Because the polymorphism is on the X-chromosome, the laboratory can be used in introductory biology courses to enhance understanding of sex-linkage and to test for Hardy-Weinberg equilibrium in females. More advanced topics, such as chromosome interference, the molecular model for recombination, and inversion heterozygosity suppression of recombination can be explored in upper-level genetics and evolution courses. DNA isolation, restriction digests, ligation, long PCR, and iPCR provide experience with techniques in molecular biology. This investigative laboratory weaves together topics stretching from molecular genetics to cytogenetics and sex-linkage, population genetics and evolutionary genetics. © 2016 The International Union of Biochemistry and Molecular Biology.

Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution.

PubMed

Kishimoto, Toshihiko; Iijima, Leo; Tatsumi, Makoto; Ono, Naoaki; Oyake, Ayana; Hashimoto, Tomomi; Matsuo, Moe; Okubo, Masato; Suzuki, Shingo; Mori, Kotaro; Kashiwagi, Akiko; Furusawa, Chikara; Ying, Bei-Wen; Yomo, Tetsuya

2010-10-21

It remains to be determined experimentally whether increasing fitness is related to positive selection, while stationary fitness is related to neutral evolution. Long-term laboratory evolution in Escherichia coli was performed under conditions of thermal stress under defined laboratory conditions. The complete cell growth data showed common continuous fitness recovery to every 2°C or 4°C stepwise temperature upshift, finally resulting in an evolved E. coli strain with an improved upper temperature limit as high as 45.9°C after 523 days of serial transfer, equivalent to 7,560 generations, in minimal medium. Two-phase fitness dynamics, a rapid growth recovery phase followed by a gradual increasing growth phase, was clearly observed at diverse temperatures throughout the entire evolutionary process. Whole-genome sequence analysis revealed the transition from positive to neutral in mutation fixation, accompanied with a considerable escalation of spontaneous substitution rate in the late fitness recovery phase. It suggested that continually increasing fitness not always resulted in the reduction of genetic diversity due to the sequential takeovers by fit mutants, but caused the accumulation of a considerable number of mutations that facilitated the neutral evolution.

Evolution of Naval Radio-Electronics and Contributions of the Naval Research Laboratory. Revision

DTIC Science & Technology

1979-01-01

obtained when used in land mobile adjacent channels were studied , as well as the communication systems with one fixed terminal changes in performance...Theoretical studies had indicated that charts show contours of signal-to-jamming ratios, the very-low frequencies would suffer some also on a worldwide...in the 1300-MHz The Model SG radar, in the development of which NRL region. The results of the NRL study of the participated, is shown on a platform

Time Evolution of the Density Field of a Micro-Explosion Using Background Oriented Schlieren

NASA Astrophysics Data System (ADS)

Suriyanarayanan, P.; Venkatakrishnan, L.; Jagadeesh, G.

In recent years micro-explosions have found interesting trans-disciplinary applications in the areas of food preservation,wood science, drug delivery, gene therapy and bio-medical applications [1, 2]. Generating controlled micro-explosions in a laboratory environment in a reliable manner is essential; to study and understand some of the near field flow dynamics associated with blast waves.

A New Way to Introduce Microarray Technology in a Lecture/Laboratory Setting by Studying the Evolution of This Modern Technology

ERIC Educational Resources Information Center

Rowland-Goldsmith, Melissa

2009-01-01

DNA microarray is an ordered grid containing known sequences of DNA, which represent many of the genes in a particular organism. Each DNA sequence is unique to a specific gene. This technology enables the researcher to screen many genes from cells or tissue grown in different conditions. We developed an undergraduate lecture and laboratory…

Facile Method to Study Catalytic Oxygen Evolution Using a Dissolved Oxygen Optical Probe: An Undergraduate Chemistry Laboratory to Appreciate Artificial Photosynthesis

ERIC Educational Resources Information Center

Renderos, Genesis; Aquino, Tawanda; Gutierrez, Kristian; Badiei, Yosra M.

2017-01-01

Artificial photosynthesis (AP) is a synthetic chemical process that replicates natural photosynthesis to mass produce hydrogen as a clean fuel from sunlight-driven water splitting (2H[subscript 2]O [right arrow] O[subscript 2] + H[subscript 2]). In both natural and artificial photosynthesis, an oxygen-evolving catalyst (OEC) is needed to catalyze…

Microgravity

NASA Image and Video Library

1999-04-01

The Equiaxed Dendritic Solidification Experiment (EDSE) is a material sciences investigation under the Formation of Microstructures/pattern formation discipline. The objective is to study the microstructural evolution of and thermal interactions between several quiaxed crystals growing dendritically in a supercooled melt of a pure and transparent substance under diffusion controlled conditions. George Myers, controls engineer, monitors the thermal environment of a ground test for the EDSE located in the Microgravity Development Laboratory (MDL).

Microgravity

NASA Image and Video Library

1999-04-01

The Equiaxed Dendritic Solidification Experiment (EDSE) is a material sciences investigation under the Formation of Microstructures/pattern formation discipline. The objective is to study the microstructural evolution of and thermal interactions between several equiaxed crystals growing dendritically in a supercooled melt of a pure and transparent substance under diffusion controlled conditions. EDSE/TDSE project engineer, Zena Hester, monitors a test run of the EDSE located in the Microgravity Development Laboratory (MDL).

Mathematical model for carbon dioxide evolution from the thermophilic composting of synthetic food wastes made of dog food

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, J.I.; Tsai, J.J.; Wu, K.H.

2005-07-01

The impacts of the aeration and the agitation on the composting process of synthetic food wastes made of dog food were studied in a laboratory-scale reactor. Two major peaks of CO{sub 2} evolution rate were observed. Each peak represented an independent stage of composting associated with the activities of thermophilic bacteria. CO{sub 2} evolutions known to correlate well with microbial activities and reactor temperatures were fitted successfully to a modified Gompertz equation, which incorporated three biokinetic parameters, namely, CO{sub 2} evolution potential, specific CO{sub 2} evolution rate, and lag phase time. No parameters that describe the impact of operating variablesmore » are involved. The model is only valid for the specified experimental conditions and may look different with others. The effects of operating parameters such as aeration and agitation were studied statistically with multivariate regression technique. Contour plots were constructed using regression equations for the examination of the dependence of CO{sub 2} evolution potentials on aeration and agitation. In the first stage, a maximum CO{sub 2} evolution potential was found when the aeration rate and the agitation parameter were set at 1.75 l/kg solids-min and 0.35, respectively. In the second stage, a maximum existed when the aeration rate and the agitation parameter were set at 1.8 l/kg solids-min and 0.5, respectively. The methods presented here can also be applied for the optimization of large-scale composting facilities that are operated differently and take longer time.« less

Workforce Effects and the Evolution of Complex Sociality in Wild Damaraland Mole Rats.

PubMed

Young, Andrew J; Jarvis, Jennifer U M; Barnaville, James; Bennett, Nigel C

2015-08-01

Explaining the evolution of eusocial and cooperatively breeding societies demands that we understand the effects of workforce size on the reproductive success of breeders. This challenge has yet to be addressed in the family that arguably exhibits the most extreme outcomes of vertebrate social evolution, the African mole rats (Bathyergidae), leaving the ultimate causes of their many unusual adaptations open to debate. Here we report-using a 14-year field study of wild Damaraland mole rats, Fukomys damarensis-that workers appear to have strong but unusual effects on offspring. Groups with larger workforces exhibited substantially higher rates of offspring recruitment while maintaining high juvenile survival rates, relationships that may have favored the evolution of the delayed dispersal, cooperation, morphological specialization, and unusual patterns of longevity that characterize such societies. Offspring reared by larger workforces also showed slower growth, however. That reduced offspring growth in larger groups has also been documented under ad lib. food conditions in the laboratory raises the possibility that this reflects socially induced growth restraint rather than simple constraints on resource availability. Our findings shed new light on the evolution of complex sociality in this enigmatic clade and highlight further departures from the norms reported for other cooperative vertebrates.

Research review, 1 January - 31 December 1972. [in space sciences and applications

NASA Technical Reports Server (NTRS)

1972-01-01

Space science projects are reported individually for the period January 1, 1972 through December 31, 1972. The articles, representing both theoretical and experimental study approaches, present highlights of the research, along with graphical diagrams of important results. Subjects range from laboratory astrophysics to balloon-borne infrared astronomy, from lunar studies to stellar evolution, and from planetary atmospheric investigations to climatology. Applications of research for the same period are also reviewed, along with their attendant results.

USAF Development Of Optical Correlation Missile Guidance

NASA Astrophysics Data System (ADS)

Kaehr, Ronald; Spector, Marvin

1980-12-01

In 1965, the Advanced Development Program (ADP)-679A of the Avionics Laboratory initiated development of guidance systems for stand-off tactical missiles. Employing project engineering support from the Aeronautical Systems Division, WPAFB, the Avionics Laboratory funded multiple terminal guidance concepts and related midcourse navigation technology. Optical correlation techniques which utilize prestored reference information for autonomous target acquisition offered the best near-term opportunity for meeting mission goals. From among the systems studied and flight tested, Aimpoint* optical area guidance provided the best and most consistent performance. Funded development by the Air Force ended in 1974 with a MK-84 guided bomb drop test demonstration at White Sands Missile Range and the subsequent transfer of the tactical missile guidance development charter to the Air Force Armament Laboratory, Eglin AFB. A historical review of optical correlation development within the Avionics Laboratory is presented. Evolution of the Aimpoint system is specifically addressed. Finally, a brief discussion of trends in scene matching technology is presented.

BOW SHOCK FRAGMENTATION DRIVEN BY A THERMAL INSTABILITY IN LABORATORY ASTROPHYSICS EXPERIMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suzuki-Vidal, F.; Lebedev, S. V.; Pickworth, L. A.

The role of radiative cooling during the evolution of a bow shock was studied in laboratory-astrophysics experiments that are scalable to bow shocks present in jets from young stellar objects. The laboratory bow shock is formed during the collision of two counterstreaming, supersonic plasma jets produced by an opposing pair of radial foil Z-pinches driven by the current pulse from the MAGPIE pulsed-power generator. The jets have different flow velocities in the laboratory frame, and the experiments are driven over many times the characteristic cooling timescale. The initially smooth bow shock rapidly develops small-scale nonuniformities over temporal and spatial scalesmore » that are consistent with a thermal instability triggered by strong radiative cooling in the shock. The growth of these perturbations eventually results in a global fragmentation of the bow shock front. The formation of a thermal instability is supported by analysis of the plasma cooling function calculated for the experimental conditions with the radiative packages ABAKO/RAPCAL.« less

Laboratory Investigation of Astrophysical Collimated Jets with Intense Lasers

NASA Astrophysics Data System (ADS)

Yuan, Dawei; Li, Yutong; Tao, Tao; Wei, Huigang; Zhong, Jiayong; Zhu, Baojun; Li, Yanfei; Zhao, Jiarui; Li, Fang; Han, Bo; Zhang, Zhe; Liang, Guiyun; Wang, Feilu; Hu, Guangyue; Zheng, Jian; Jiang, Shaoen; Du, Kai; Ding, Yongkun; Zhou, Shenlei; Zhu, Baoqiang; Zhu, Jianqiang; Zhao, Gang; Zhang, Jie

2018-06-01

One of the remarkable dynamic features of the Herbig–Haro (HH) object is its highly collimated propagation far away from the accretion disk. Different factors are proposed to give us a clearly physical explanation behind these fascinating phenomena, including magnetic field, radiation cooling, surrounding medium, and so on. Laboratory astrophysics, as a new complementary method of studying astrophysical issues, can provide an insight into these behaviors in a similar and controllable laboratory environment. Here we report the scaled laboratory experiments that a well-collimated radiative jet with high Mach number is successfully created to mimic the evolution of HH objects. According to our results, we find that the radiation cooling effect within the jet and the outer rare surrounding plasmas from the X-ray (>keV) photoionized target contribute to the jet collimation. The local nonuniform density structures along the collimated radiative jet axis are caused by the pressure competition between the inner jet and the outer plasmas. The corresponding simulations performed with radiation-hydrodynamic codes FLASH reveal how the radiative jet evolves.

Evolution: bats, radar, and science (The Remote Sensing Award Lecture)

NASA Technical Reports Server (NTRS)

Atlas, David

1991-01-01

A parallel is drawn between the evolution of the bat and the evolution of the science and technology of radar and remote sensing to illustrate the importance of the role of Darwinian processes in the culture and practice of science and technology, and thus in the survival of their vitality. The lecture touches on several themes of interest to the science community, such as the relation between basic and applied science and engineering; research in academia, industry, and government laboratories; elite scientists; and the survival of a scientific institution.

Proceedings of the MEVTV Workshop on The Evolution of Magma Bodies on Mars

NASA Technical Reports Server (NTRS)

Mouginis-Mark, P. (Editor); Holloway, J. (Editor)

1990-01-01

The workshop focused on many of the diverse approaches related to the evolution of magma bodies on Mars that have been pursued during the course of the Mars Evolution of Volcanism, Tectonism, and Volatiles (MEVTV) Program. Approximately 35 scientists from the Mars volcanology, petrology, geochemistry, and modeling communities attended. Segments of the meeting concentrated of laboratory analyses and investigations of SNC meteorites, the interpretation of Viking Orbiter and Lander datasets, and the interpretation of computer codes that model volcanic and tectonic processes on Mars. Abstracts of these reports are presented.

Generation and Evolution of High-Mach-Number Laser-Driven Magnetized Collisionless Shocks in the Laboratory

DOE PAGES

Schaeffer, D. B.; Fox, W.; Haberberger, D.; ...

2017-07-13

Here, we present the first laboratory generation of high-Mach-number magnetized collisionless shocks created through the interaction of an expanding laser-driven plasma with a magnetized ambient plasma. Time-resolved, two-dimensional imaging of plasma density and magnetic fields shows the formation and evolution of a supercritical shock propagating at magnetosonic Mach number M ms ≈ 12. Particle-in-cell simulations constrained by experimental data further detail the shock formation and separate dynamics of the multi-ion-species ambient plasma. The results show that the shocks form on time scales as fast as one gyroperiod, aided by the efficient coupling of energy, and the generation of a magneticmore » barrier between the piston and ambient ions. The development of this experimental platform complements present remote sensing and spacecraft observations, and opens the way for controlled laboratory investigations of high-Mach number collisionless shocks, including the mechanisms and efficiency of particle acceleration.« less

Generation and Evolution of High-Mach-Number Laser-Driven Magnetized Collisionless Shocks in the Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schaeffer, D. B.; Fox, W.; Haberberger, D.

Here, we present the first laboratory generation of high-Mach-number magnetized collisionless shocks created through the interaction of an expanding laser-driven plasma with a magnetized ambient plasma. Time-resolved, two-dimensional imaging of plasma density and magnetic fields shows the formation and evolution of a supercritical shock propagating at magnetosonic Mach number M ms ≈ 12. Particle-in-cell simulations constrained by experimental data further detail the shock formation and separate dynamics of the multi-ion-species ambient plasma. The results show that the shocks form on time scales as fast as one gyroperiod, aided by the efficient coupling of energy, and the generation of a magneticmore » barrier between the piston and ambient ions. The development of this experimental platform complements present remote sensing and spacecraft observations, and opens the way for controlled laboratory investigations of high-Mach number collisionless shocks, including the mechanisms and efficiency of particle acceleration.« less

Laboratory Astrophysics Prize: Laboratory Astrophysics with Nuclei

NASA Astrophysics Data System (ADS)

Wiescher, Michael

2018-06-01

Nuclear astrophysics is concerned with nuclear reaction and decay processes from the Big Bang to the present star generation controlling the chemical evolution of our universe. Such nuclear reactions maintain stellar life, determine stellar evolution, and finally drive stellar explosion in the circle of stellar life. Laboratory nuclear astrophysics seeks to simulate and understand the underlying processes using a broad portfolio of nuclear instrumentation, from reactor to accelerator from stable to radioactive beams to map the broad spectrum of nucleosynthesis processes. This talk focuses on only two aspects of the broad field, the need of deep underground accelerator facilities in cosmic ray free environments in order to understand the nucleosynthesis in stars, and the need for high intensity radioactive beam facilities to recreate the conditions found in stellar explosions. Both concepts represent the two main frontiers of the field, which are being pursued in the US with the CASPAR accelerator at the Sanford Underground Research Facility in South Dakota and the FRIB facility at Michigan State University.

Phytoplankton Productivity numerical model: calibration via laboratory cultures

NASA Astrophysics Data System (ADS)

Zavatarelli, Marco; fiori, Emanuela; Carolina, Amadio

2017-04-01

The primary production module of the "Biogeochemical Flux Model" (BFM) has been used to replicate results from laboratory phytoplankton cultures of diatoms, dinoflagellates and picophytoplankton. The model explicitly solve for the phytoplankton, chlorophyll, carbon, phosphorus, nitrogen and (diatoms only) silicon content. Simulations of the temporal evolution of the cultured phytoplankton biomass, have been carried out in order to provide a correct parameterization of the temperature role in modulating the growth dynamics, and to gain insight in the process of chlorophyll turnover, with particular reference to the phytoplankton biomass decay in condition of nutrient stress. Results highligthed some limitation of the Q10 approach in defining the temperature constraints on the primary production (particularly at relatively high temperature) This required a modification of such approach. Moreover, the decay of the chlorophyll concentration under nutrient stress, appeared (as expected) significantly decoupled from the evolution of the carbon content. The implementation of a specific procedure (based on the laboratory culture results) adressing such decoupling, allowed for the achievement of better agreement between model and observations.

Adaptation of Enterococcus faecalis to daptomycin reveals an ordered progression to resistance.

PubMed

Miller, Corwin; Kong, Jiayi; Tran, Truc T; Arias, Cesar A; Saxer, Gerda; Shamoo, Yousif

2013-11-01

With increasing numbers of hospital-acquired antibiotic resistant infections each year and staggering health care costs, there is a clear need for new antimicrobial agents, as well as novel strategies to extend their clinical efficacy. While genomic studies have provided a wealth of information about the alleles associated with adaptation to antibiotics, they do not provide essential information about the relative importance of genomic changes, their order of appearance, or potential epistatic relationships between adaptive changes. Here we used quantitative experimental evolution of a single polymorphic population in continuous culture with whole-genome sequencing and allelic frequency measurements to study daptomycin (DAP) resistance in the vancomycin-resistant clinical pathogen Enterococcus faecalis S613. Importantly, we sustained both planktonic and nonplanktonic (i.e., biofilm) populations in coculture as the concentration of antibiotic was raised, facilitating the development of more ecological complexity than is typically observed in laboratory evolution. Quantitative experimental evolution revealed a clear order and hierarchy of genetic changes leading to resistance, the signaling and metabolic pathways responsible, and the relative importance of these mutations to the evolution of DAP resistance. Despite the relative simplicity of this ex vivo approach compared to the ecological complexity of the human body, we showed that experimental evolution allows for rapid identification of clinically relevant adaptive molecular pathways and new targets for drug design in pathogens.

Carbon in the Universe

NASA Technical Reports Server (NTRS)

Allamandola, Louis J.

2013-01-01

Over the past few decades, NASA missions have revealed that we live in a Universe that is not a hydrogen-dominated, physicist's paradise, but in a molecular Universe with complex molecules directly interwoven into its fabric. These missions have shown that molecules are an abundant and important component of astronomical objects at all stages of their evolution and that they play a key role in many processes that dominate the structure and evolution of galaxies. Closer to home in our galaxy, the Milky Way, they have revealed a unique and complex organic inventory of regions of star and planet formation that may well represent some of the prebiotic roots to life. Astrobiology emerges from the great interest in understanding astrochemical evolution from simple to complex molecules, especially those with biogenic potential and the roles they may play as primordial seeds in the origin of life on habitable worlds. The first part of this talk will highlight how infrared spectroscopic studies of interstellar space, combined with dedicated laboratory simulations, have revealed the widespread presence of complex organics across deep space. The remainder of the presentation will focus on the evolution of these materials and astrobiology.

The USDA Forest Service National Seed Laboratory

Treesearch

Robert P. Karrfalt

2006-01-01

The USDA Forest Service National Seed Laboratory has provided seed technology services to the forest and conservation seed and nursery industry for more than 50 years. This paper briefly traces the lab’s evolution from a regional facility concerned principally with southern pines to its newest mission as a national facility working with all native U.S. plants and...

Planetary Evolution, Habitability and Life

NASA Astrophysics Data System (ADS)

Tilman, Spohn; Breuer, Doris; de Vera, Jean-Pierre; Jaumann, Ralf; Kuehrt, Ekkehard; Möhlmann, Diedrich; Rauer, Heike; Richter, Lutz

A Helmholtz Alliance has been established to study the interactions between life and the evo-lution of planets. The approach goes beyond current studies in Earth-System Sciences by including the entire planet from the atmosphere to the deep interior, going beyond Earth to include other Earth-like planets such as Mars and Venus and satellites in the solar system where ecosystems may exist underneath thick ice shells,considering other solar systems. The approach includes studies of the importance of plate tectonics and other tectonic regimes such as single plate tectonics for the development and for sustaining life and asks the question: If life can adapt to a planet, can a planet adapt to life? Can life be seen as a geological process and if so, can life shape the conditions on a planet such that life can flourish? The vision goes beyond the solar system by including the challenges that life would face in other solar systems. The Alliance uses theoretical modelling of feedback cycles and coupled planetary atmosphere and interior processes. These models are based on the results of remote sensing of planetary surfaces and atmospheres, laboratory studies on (meteorite) samples from other planets and on studies of life under extreme conditions. The Alliance uses its unique capabilities in remote sensing and in-situ exploration to prepare for empirical studies of the parameters affecting habitability. The Alliance aims to establish a network infrastructure in Germany to enable the most ad-vanced research in planetary evolution studies by including life as a planetary process. Finding extraterrestrial life is a task of fundamental importance to mankind, and its fulfilment will be philosophically profound. Evaluating the interactions between planetary evolution and life will help to put the evolution of our home planet (even anthropogenic effects) into perspective.

Indications for laboratory tests in primary care: assessment of the most frequent indications and requests with blank clinical information

PubMed Central

Salinas, Maria; López-Garrigós, Maite; Flores, Emilio; Leiva-Salinas, Maria; Esteban, Patricia; Ahumada, Miguel; Leiva-Salinas, Carlos

2016-01-01

Introduction The aim of this work is twofold. Firstly, to study the temporal evolution in the number of laboratory requests from primary care without clinical indication, and to analyse the number of such requests before and after the implementation of an automated requesting procedure. Secondly, to investigate what are the most frequent clinical indications that prompted laboratory testing. Materials and methods This is a retrospective observational study conducted from January 2009 to December 2015. We counted the requests without clinical question, calculated the number of such requests per total number of requests and listed the most frequent indications. Results The number of tests requests with a blank clinical indication was significantly higher in 2009 when compared to 2015 (80% vs. 20%; P < 0.001). For every year in this 7-year period, dyslipidemia, essential hypertension and diabetes were the most prevalent diagnoses that prompted a laboratory test in primary care, accounting for more than 20% of all indications. Conclusions The number of primary care requests without patient clinical question has decreased after the implementation of an automated requesting procedure. Disorders of lipid metabolism, essential hypertension and diabetes mellitus were the most prevalent diagnoses that prompted a laboratory test in primary care. PMID:27812310

Adventures in Laser Produced Plasma Research

DOE Office of Scientific and Technical Information (OSTI.GOV)

Key, M

2006-01-13

In the UK the study of laser produced plasmas and their applications began in the universities and evolved to a current system where the research is mainly carried out at the Rutherford Appleton Laboratory Central Laser Facility ( CLF) which is provided to support the universities. My own research work has been closely tied to this evolution and in this review I describe the history with particular reference to my participation in it.

Planetary Surface-Atmosphere Interactions

NASA Astrophysics Data System (ADS)

Merrison, J. P.; Bak, E.; Finster, K.; Gunnlaugsson, H. P.; Holstein-Rathlou, C.; Knak Jensen, S.; Nørnberg, P.

2013-09-01

Planetary bodies having an accessible solid surface and significant atmosphere, such as Earth, Mars, Venus, Titan, share common phenomenology. Specifically wind induced transport of surface materials, subsequent erosion, the generation and transport of solid aerosols which leads both to chemical and electrostatic interaction with the atmosphere. How these processes affect the evolution of the atmosphere and surface will be discussed in the context of general planetology and the latest laboratory studies will be presented.

Environmental influences on galaxy evolution

NASA Technical Reports Server (NTRS)

Zepf, Stephen E.; Whitmore, Bradley C.

1993-01-01

We investigate the role of mergers and interactions in the evolution of galaxies by studying galaxies in compact groups. Compact groups of galaxies have high spatial densities and low velocity dispersions making these regions ideal laboratories in which to study the effect of interactions and mergers. Based on a detailed spectroscopic and multi-color imaging study, we find that both the isophotal shapes and the stellar kinematics indicate that many of the elliptical galaxies in compact groups have been affected by tidal interactions. At the same time, however, we find that only a few elliptical galaxies in compact groups have evidence for the young stellar populations that would be expected if they are the result of recent merger of two spiral galaxies. Therefore, we conclude that tidal interactions affect galaxy properties at the current epoch, but the bulk of basic galaxy formation and transformation must have occurred at much higher redshift.

Integrated studies into characteristics of physical fields using discontinuous geomedium models under external loading

NASA Astrophysics Data System (ADS)

Usoltseva Vostrikov, OM, VI; Tsoy, PA; Semenov, VN

2018-03-01

The article presents the laboratory study of deformation in artificial layered geomaterial samples down to failure with the simultaneous measurement of stresses, strains, micro-strains and signals of microseismic emission. The analysis of the synchronized experimental data made it possible to determine features of change in the microseismicity parameters and micro-strain fields in the samples depending on the deformation stage, and also to reveal the dynamics of evolution of microfailures and the main fracture zone.

[Croupous pneumonia: the history of studies (from S.P. Botkin to our days)].

PubMed

Fesenko, O V; Sinopal'nikov, A I

2012-01-01

Etiology of croupous pneumonia remaining a challenging problem has a long history of investigations. The term croupous pneumonia is traditionally used in this country to describe the form of the disease characterized by hyperergic inflammation and specific clinical/laboratory parameters. A valuable contribution to the study of this condition was made by S.P. Botkin. This paper deals with evolution of the views of epidemiology, etiology, pathomorphology, and methods of therapy of croupous pneumonia since Botkin's time to these days.

Community Decadal Panel for Terrestrial Analogs to Mars

NASA Astrophysics Data System (ADS)

Barlow, N. G.; Farr, T.; Baker, V. R.; Bridges, N.; Carsey, F.; Duxbury, N.; Gilmore, M. S.; Green, J. R.; Grin, E.; Hansen, V.; Keszthelyi, L.; Lanagan, P.; Lentz, R.; Marinangeli, L.; Morris, P. A.; Ori, G. G.; Paillou, P.; Robinson, C.; Thomson, B.

2001-11-01

It is well recognized that interpretations of Mars must begin with the Earth as a reference. The most successful comparisons have focused on understanding geologic processes on the Earth well enough to extrapolate to Mars' environment. Several facets of terrestrial analog studies have been pursued and are continuing. These studies include field workshops, characterization of terrestrial analog sites for Mars, instrument tests, laboratory measurements (including analysis of martian meteorites), and computer and laboratory modeling. The combination of all these activities allows scientists to constrain the processes operating in specific terrestrial environments and extrapolate how similar processes could affect Mars. The Terrestrial Analogs for Mars Community Panel is considering the following two key questions: (1) How do terrestrial analog studies tie in to the MEPAG science questions about life, past climate, and geologic evolution of Mars, and (2) How can future instrumentation be used to address these questions. The panel is considering the issues of data collection, value of field workshops, data archiving, laboratory measurements and modeling, human exploration issues, association with other areas of solar system exploration, and education and public outreach activities.

Terrestrial Analogs to Mars

NASA Astrophysics Data System (ADS)

Farr, T. G.; Arcone, S.; Arvidson, R. W.; Baker, V.; Barlow, N. G.; Beaty, D.; Bell, M. S.; Blankenship, D. D.; Bridges, N.; Briggs, G.; Bulmer, M.; Carsey, F.; Clifford, S. M.; Craddock, R. A.; Dickerson, P. W.; Duxbury, N.; Galford, G. L.; Garvin, J.; Grant, J.; Green, J. R.; Gregg, T. K. P.; Guinness, E.; Hansen, V. L.; Hecht, M. H.; Holt, J.; Howard, A.; Keszthelyi, L. P.; Lee, P.; Lanagan, P. D.; Lentz, R. C. F.; Leverington, D. W.; Marinangeli, L.; Moersch, J. E.; Morris-Smith, P. A.; Mouginis-Mark, P.; Olhoeft, G. R.; Ori, G. G.; Paillou, P.; Reilly, J. F., II; Rice, J. W., Jr.; Robinson, C. A.; Sheridan, M.; Snook, K.; Thomson, B. J.; Watson, K.; Williams, K.; Yoshikawa, K.

2002-08-01

It is well recognized that interpretations of Mars must begin with the Earth as a reference. The most successful comparisons have focused on understanding geologic processes on the Earth well enough to extrapolate to Mars' environment. Several facets of terrestrial analog studies have been pursued and are continuing. These studies include field workshops, characterization of terrestrial analog sites, instrument tests, laboratory measurements (including analysis of Martian meteorites), and computer and laboratory modeling. The combination of all these activities allows scientists to constrain the processes operating in specific terrestrial environments and extrapolate how similar processes could affect Mars. The Terrestrial Analogs for Mars Community Panel has considered the following two key questions: (1) How do terrestrial analog studies tie in to the Mars Exploration Payload Assessment Group science questions about life, past climate, and geologic evolution of Mars, and (2) How can future instrumentation be used to address these questions. The panel has considered the issues of data collection, value of field workshops, data archiving, laboratory measurements and modeling, human exploration issues, association with other areas of solar system exploration, and education and public outreach activities.

Predator-driven brain size evolution in natural populations of Trinidadian killifish (Rivulus hartii)

PubMed Central

Walsh, Matthew R.; Broyles, Whitnee; Beston, Shannon M.; Munch, Stephan B.

2016-01-01

Vertebrates exhibit extensive variation in relative brain size. It has long been assumed that this variation is the product of ecologically driven natural selection. Yet, despite more than 100 years of research, the ecological conditions that select for changes in brain size are unclear. Recent laboratory selection experiments showed that selection for larger brains is associated with increased survival in risky environments. Such results lead to the prediction that increased predation should favour increased brain size. Work on natural populations, however, foreshadows the opposite trajectory of evolution; increased predation favours increased boldness, slower learning, and may thereby select for a smaller brain. We tested the influence of predator-induced mortality on brain size evolution by quantifying brain size variation in a Trinidadian killifish, Rivulus hartii, from communities that differ in predation intensity. We observed strong genetic differences in male (but not female) brain size between fish communities; second generation laboratory-reared males from sites with predators exhibited smaller brains than Rivulus from sites in which they are the only fish present. Such trends oppose the results of recent laboratory selection experiments and are not explained by trade-offs with other components of fitness. Our results suggest that increased male brain size is favoured in less risky environments because of the fitness benefits associated with faster rates of learning and problem-solving behaviour. PMID:27412278

Isotope Geochemistry for Comparative Planetology of Exoplanets

NASA Technical Reports Server (NTRS)

Mandt, K. E.; Atreya, S.; Luspay-Kuti, A.; Mousis, O.; Simon, A.; Hofstadter, M. D.

2017-01-01

Isotope geochemistry has played a critical role in understanding processes at work in and the history of solar system bodies. Application of these techniques to exoplanets would be revolutionary and would allow comparative planetology with the formation and evolution of exoplanet systems. The roadmap for comparative planetology of the origins and workings of exoplanets involves isotopic geochemistry efforts in three areas: (1) technology development to expand observations of the isotopic composition of solar system bodies and expand observations to isotopic composition of exoplanet atmospheres; (2) theoretical modeling of how isotopes fractionate and the role they play in evolution of exoplanetary systems, atmospheres, surfaces and interiors; and (3) laboratory studies to constrain isotopic fractionation due to processes at work throughout the solar system.

[Evolution of paroxysmal nocturnal hemoglobinuria clone during an hemolytic crisis in a patient with aplastic anemia. Flow cytometry study].

PubMed

Canalejo, K; Galassi, N; Riera, N; Bengió, R; Aixalá, M

2001-01-01

The expansion of paroxysmal nocturnal hemoglobinuria (PHN) clone was evaluated in a patient with aplastic anemia (AA) of 18 years of evolution during an hemolytic crisis. On day 0, Ham and Sucrosa tests were positive and hematological parameters were altered. Low hemoglobin (Hb) levels and erythrocyte and leukocyte counts were found and continued decreasing on days 7 and 24 (last day of study). High LDH levels, indirect bilirubin and reticulocyte counts were detected throughout. We evaluated CD55 and CD59 on erythrocytes by flow cytometry. Our results showed low CD55 expression with respect to the normal pattern. Since day 0, CD59 staining detected two red cell populations: PNH I (48%), cells with positive fluorescence similar to normal and PNH III (52%), negative cells (PNH clone). These negative cells increased, reaching 70% on day 24. Other membrane anchored leukocyte proteins were also absent (CD14) or decreased (CD16). We found a good correlation between clinical observations, evolution of the laboratory values and expansion of the PNH clone.

Underground Nuclear Astrophysics - from LUNA to CASPAR

NASA Astrophysics Data System (ADS)

Strieder, Frank; Caspar Collaboration

2015-04-01

It is in the nature of astrophysics that many of the processes and objects are physically inaccessible. Thus, it is important that those aspects that can be studied in the laboratory are well understood. Nuclear reactions are such quantities that can be partly measured in the laboratory. These reactions influence the nucleosynthesis of the elements in the Big Bang as well as in all objects formed thereafter, and control the associated energy generation and evolution of stars. Since 20 years LUNA (Laboratory for Underground Nuclear Astrophysics) has been measuring cross sections relevant for hydrogen burning in the Gran Sasso Laboratory and demonstrated the research potential of an underground accelerator facility. Unfortunately, the number of reactions is limited by the energy range accessible with the 400 kV LUNA accelerator. The CASPAR (Compact Accelerator System for Performing Astrophysical Research) Collaboration will implement a high intensity 1 MV accelerator at the Sanford Underground Research Facility (SURF) and overcome the current limitation at LUNA. This project will primarily focus on the neutron sources for the so-called s-process, e.g. 13 C(α , n) 16 O and 22 Ne(α , n) 25 Mg , and lead to unprecedented measurements compared to previous studies.

Avian malaria: a new lease of life for an old experimental model to study the evolutionary ecology of Plasmodium.

PubMed

Pigeault, Romain; Vézilier, Julien; Cornet, Stéphane; Zélé, Flore; Nicot, Antoine; Perret, Philippe; Gandon, Sylvain; Rivero, Ana

2015-08-19

Avian malaria has historically played an important role as a model in the study of human malaria, being a stimulus for the development of medical parasitology. Avian malaria has recently come back to the research scene as a unique animal model to understand the ecology and evolution of the disease, both in the field and in the laboratory. Avian malaria is highly prevalent in birds and mosquitoes around the world and is amenable to laboratory experimentation at each stage of the parasite's life cycle. Here, we take stock of 5 years of experimental laboratory research carried out using Plasmodium relictum SGS1, the most prevalent avian malaria lineage in Europe, and its natural vector, the mosquito Culex pipiens. For this purpose, we compile and analyse data obtained in our laboratory in 14 different experiments. We provide statistical relationships between different infection-related parameters, including parasitaemia, gametocytaemia, host morbidity (anaemia) and transmission rates to mosquitoes. This analysis provides a wide-ranging picture of the within-host and between-host parameters that may bear on malaria transmission and epidemiology. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

A Model for Designing Adaptive Laboratory Evolution Experiments.

PubMed

LaCroix, Ryan A; Palsson, Bernhard O; Feist, Adam M

2017-04-15

The occurrence of mutations is a cornerstone of the evolutionary theory of adaptation, capitalizing on the rare chance that a mutation confers a fitness benefit. Natural selection is increasingly being leveraged in laboratory settings for industrial and basic science applications. Despite increasing deployment, there are no standardized procedures available for designing and performing adaptive laboratory evolution (ALE) experiments. Thus, there is a need to optimize the experimental design, specifically for determining when to consider an experiment complete and for balancing outcomes with available resources (i.e., laboratory supplies, personnel, and time). To design and to better understand ALE experiments, a simulator, ALEsim, was developed, validated, and applied to the optimization of ALE experiments. The effects of various passage sizes were experimentally determined and subsequently evaluated with ALEsim, to explain differences in experimental outcomes. Furthermore, a beneficial mutation rate of 10 -6.9 to 10 -8.4 mutations per cell division was derived. A retrospective analysis of ALE experiments revealed that passage sizes typically employed in serial passage batch culture ALE experiments led to inefficient production and fixation of beneficial mutations. ALEsim and the results described here will aid in the design of ALE experiments to fit the exact needs of a project while taking into account the resources required and will lower the barriers to entry for this experimental technique. IMPORTANCE ALE is a widely used scientific technique to increase scientific understanding, as well as to create industrially relevant organisms. The manner in which ALE experiments are conducted is highly manual and uniform, with little optimization for efficiency. Such inefficiencies result in suboptimal experiments that can take multiple months to complete. With the availability of automation and computer simulations, we can now perform these experiments in an optimized fashion and can design experiments to generate greater fitness in an accelerated time frame, thereby pushing the limits of what adaptive laboratory evolution can achieve. Copyright © 2017 American Society for Microbiology.

Hybrid magnet program at the Francis Bitter National Magnet Laboratory MIT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leupold, M.J.; Weggel, R.J.

1992-01-01

Resistive water-cooled magnets can generate field according to how much power is available. The authors have developed the hybrid concept for generating fields beyond a power limit, up to 45 T. Along the way the authors have progressed through five successively more adventurous designs. This paper chronicles the evolution of hybrid magnets built at the Francis Bitter National Magnet Laboratory.

Geological and petrologic evolution of seamounts near the EPR based on submersible and camera study

NASA Astrophysics Data System (ADS)

Batiza, Rodey; Smith, Terri L.; Niu, Yaoling

1989-09-01

Observations from 17 ALVIN dives and 14 ANGUS runs plus laboratory study of basalt samples collected with ALVIN help to constrain the morphologic, volcanic and petrologic evolution of four seamounts near the East Pacific Rise (EPR). Comparison among the four volcanoes provides evidence for a general pattern of near-EPR seamount evolution and shows the importance of sedimentation, mass wasting, hydrothermal activity and other geologic processes that occur on submerged oceanic volcanoes. Seamount 5, closest to the EPR (1.0 Ma) is the youngest seamount and may still be active. Its summit is covered by fresh lavas, recent faults and hydrothermal deposits. Seamount D is on crust 1.55 Ma and is inactive; like seamount 5, it has a breached caldera and is composed exclusively of N-MORB. Seamounts 5 and D represent the last stages of growth of typical N-MORB-only seamounts near the EPR axis. Seamounts 6 and 7 have bumpy, flattish summits composed of transitional and alkalic lavas. These lavas probably represent caldera fillings and caps overlying an edifice composed of N-MORB. Evolution from N-MORB-only cratered edifices to the alkalic stage does not occur on all near-EPR seamounts and may be favored by location on structures with relative-motion-parallel orientation.

Unlinked Mendelian inheritance of red and black pigmentation in snakes: Implications for Batesian mimicry.

PubMed

Davis Rabosky, Alison R; Cox, Christian L; Rabosky, Daniel L

2016-04-01

Identifying the genetic basis of mimetic signals is critical to understanding both the origin and dynamics of mimicry over time. For species not amenable to large laboratory breeding studies, widespread color polymorphism across natural populations offers a powerful way to assess the relative likelihood of different genetic systems given observed phenotypic frequencies. We classified color phenotype for 2175 ground snakes (Sonora semiannulata) across the continental United States to analyze morph ratios and test among competing hypotheses about the genetic architecture underlying red and black coloration in coral snake mimics. We found strong support for a two-locus model under simple Mendelian inheritance, with red and black pigmentation being controlled by separate loci. We found no evidence of either linkage disequilibrium between loci or sex linkage. In contrast to Batesian mimicry systems such as butterflies in which all color signal components are linked into a single "supergene," our results suggest that the mimetic signal in colubrid snakes can be disrupted through simple recombination and that color evolution is likely to involve discrete gains and losses of each signal component. Both outcomes are likely to contribute to the exponential increase in rates of color evolution seen in snake mimicry systems over insect systems. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

A numerical cloud model for the support of laboratory experimentation

NASA Technical Reports Server (NTRS)

Hagen, D. E.

1979-01-01

A numerical cloud model is presented which can describe the evolution of a cloud starting from moist aerosol-laden air through the diffusional growth regime. The model is designed for the direct support of cloud chamber laboratory experimentation, i.e., experiment preparation, real-time control and data analysis. In the model the thermodynamics is uncoupled from the droplet growth processes. Analytic solutions for the cloud droplet growth equations are developed which can be applied in most laboratory situations. The model is applied to a variety of representative experiments.

NASA Laboratory Astrophysics Workshop 2006 Introductory Remarks

NASA Technical Reports Server (NTRS)

Hasan, Hashima

2006-01-01

NASA Laboratory Astrophysics Workshop 2006, is the fourth in a series of workshops held at four year intervals, to assess the laboratory needs of NASA's astrophysics missions - past, current and future. Investigators who need laboratory data to interpret their observations from space missions, theorists and modelers, experimentalists who produce the data, and scientists who compile databases have an opportunity to exchange ideas and understand each other's needs and limitations. The multi-wavelength character of these workshops allows cross-fertilization of ideas, raises awareness in the scientific community of the rapid advances in other fields, and the challenges it faces in prioritizing its laboratory needs in a tight budget environment. Currently, we are in the golden age of Space Astronomy, with three of NASA s Great Observatories, Hubble Space Telescope (HST), Chandra X-Ray Observatory (CXO), and Spitzer Space Telescope (SST), in operation and providing astronomers and opportunity to perform synergistic observations. In addition, the Far Ultraviolet Spectroscopic Explorer (FUSE), XMM-Newton, HETE-2, Galaxy Evolution Explorer (GALEX), INTEGRAL and Wilkinson Microwave Anisotropy Probe (WMAP), are operating in an extended phase, while Swift and Suzaku are in their prime phase of operations. The wealth of data from these missions is stretching the Laboratory Astrophysics program to its limits. Missions in the future, which also need such data include the James Webb Space Telescope (JWST), Space Interferometry Mission (SIM), Constellation-X (Con-X), Herschel, and Planck. The interpretation of spectroscopic data from these missions requires knowledge of atomic and molecular parameters such as transition probabilities, f-values, oscillator strengths, excitation cross sections, collision strengths, which have either to be measured in the laboratory by simulating space plasma and interactions therein, or by theoretical calculations and modeling. Once the laboratory data are obtained, a key step to making them available to the observer is the creation and maintenance of critically compiled databases. Other areas of study, that are important for understanding planet formation, and for detection of molecules that are indicators of life, are also supported by the Laboratory Astrophysics program. Some examples are: studies of ices and dust grains in a space environment; nature and evolution of interstellar carbon-rich dust; and polycyclic aromatic hydrocarbons. In addition, the program provides an opportunity for the investigation of novel ideas, such as simulating radiative shock instabilities in plasmas, in order to understand jets observed in space. A snapshot of the currently funded program, mission needs, and relevance of laboratory data to interpreting observations, will be obtained at this workshop through invited and contributed talks and poster papers. These will form the basis for discussions in splinter groups. The Science Organization Committee will integrate the results of the discussions into a coherent White Paper, which will provide guidance to NASA in structuring the Laboratory Astrophysics program in subsequent years, and also to the scientific community in submitting research proposals to NASA for funding.

CRevolution 2—Origin and evolution of the Colorado River system, workshop abstracts

USGS Publications Warehouse

Beard, L. Sue; Karlstrom, Karl E.; Young, Richard A.; Billingsley, George H.

2011-01-01

A 2010 Colorado River symposium, held in Flagstaff, Arizona, involved 70 participants who engaged in intense debate about the origin and evolution of the Colorado River system. This symposium, built upon two previous decadal scientific meetings, focused on forging scientific consensus, where possible, while articulating continued controversies regarding the Cenozoic evolution of the Colorado River System and the landscapes of the Colorado Plateau-Rocky Mountain region that it drains. New developments involved hypotheses that Neogene mantle flow is driving plateau tilting and differential uplift and new and controversial hypotheses for the pre-6 Ma presence and evolution of ancestral rivers that may be important in the history and birth of the present Colorado River. There is a consensus that plateau tilt and uplift models must be tested with multidisciplinary studies involving differential incision studies and additional geochronology and thermochronology to determine the relative importance of tectonic and geomorphic forces that shape the spectacular landscapes of the Colorado Plateau, Arizona and region. In addition to the scientific goals, the meeting participants emphasized the iconic status of Grand Canyon for geosciences and the importance of good communication between the research community, the geoscience education/interpretation community, the public, and the media. Building on a century-long tradition, this region still provides a globally important natural laboratory for studies of the interactions of erosion and tectonism in shaping the landscape of elevated plateaus.

Demographics and Case Studies of Galactic Outflows in the Local Universe

NASA Astrophysics Data System (ADS)

Rupke, David

2017-07-01

Galactic outflows driven by both star formation and active black holes are an important driver of galaxy evolution. The local universe is a sensitive laboratory for understanding the scaling relations that characterize these winds and the physics that govern them. I will review what we know from statistical studies about the prevalance and properties of nearby galactic winds and how these properties depend on those of the host galaxy or power source. I will also highlight detailed case studies of key objects that illustrate the multiphase structure of these winds.

PAH-Mineral Interactions. A Laboratory Approach to Astrophysical Catalysis

NASA Astrophysics Data System (ADS)

Adolfo Cruz Diaz, Gustavo; Mattioda, Andrew

2017-06-01

Polycyclic Aromatic Hydrocarbon (PAH) molecules carry the infrared emission features which dominate the spectra of most galactic and extragalactic sources. Our study investigates the chemical evolution, chemical properties, physical properties, thermal stability, and photostability of samples produced from the UV-irradiation of simulated mineral dust grains coated with aromatics and astrobiologically relevant ices, using infrared spectroscopy. We investigate the chemical evolution of aromatic organics via anhydrous (no H2O ice) and hydrous (H2O ice) mechanisms. The anhydrous mechanism involves UV-induced catalytic reactions between organics and dense-cloud mineral grains, whereas the hydrous mechanism incorporates H2O-rich ice mixtures with the minerals and organics. These investigations identify the chemical and physical interactions occurring between the organic species, the dust grains and water-rich ices.These laboratory simulations also generate observable IR spectroscopic parameters for future astronomical observations with infrared telescopes such as SOFIA and JWST as well as provide empirical parameters for input into astronomical models of the early stages of planetary formation. These studies give us a deeper understanding of the potential catalytic pathways mineral surfaces provide and a deeper understanding of the role of ice-organic compositions in the chemical reaction pathways and how these processes fit into the formation of new planetary systems.In order to achieve these goals we use the Harrick ‘Praying Mantis’ Diffuse Reflectance Accessory (DRIFTS), which allows FTIR measurements of dust samples under ambient conditions by measuring the light scattered by the dust sample. We have also incorporated a low -temperature reaction chamber permitting the DRIFTS measurements at low temperatures and high-vacuum. This set-up permits the analysis of the solid particles surfaces revealing the chemical species adsorbed as well as their chemical evolution via the introduction of reactant gases, UV irradiation, temperature change, etc.

Adaptive laboratory evolution of ethanologenic Zymomonas mobilis strain tolerant to furfural and acetic acid inhibitors.

PubMed

Shui, Zong-Xia; Qin, Han; Wu, Bo; Ruan, Zhi-yong; Wang, Lu-shang; Tan, Fu-Rong; Wang, Jing-Li; Tang, Xiao-Yu; Dai, Li-Chun; Hu, Guo-Quan; He, Ming-Xiong

2015-07-01

Furfural and acetic acid from lignocellulosic hydrolysates are the prevalent inhibitors to Zymomonas mobilis during cellulosic ethanol production. Developing a strain tolerant to furfural or acetic acid inhibitors is difficul by using rational engineering strategies due to poor understanding of their underlying molecular mechanisms. In this study, strategy of adaptive laboratory evolution (ALE) was used for development of a furfural and acetic acid-tolerant strain. After three round evolution, four evolved mutants (ZMA7-2, ZMA7-3, ZMF3-2, and ZMF3-3) that showed higher growth capacity were successfully obtained via ALE method. Based on the results of profiling of cell growth, glucose utilization, ethanol yield, and activity of key enzymes, two desired strains, ZMA7-2 and ZMF3-3, were achieved, which showed higher tolerance under 7 g/l acetic acid and 3 g/l furfural stress condition. Especially, it is the first report of Z. mobilis strain that could tolerate higher furfural. The best strain, Z. mobilis ZMF3-3, has showed 94.84% theoretical ethanol yield under 3-g/l furfural stress condition, and the theoretical ethanol yield of ZM4 is only 9.89%. Our study also demonstrated that ALE method might also be used as a powerful metabolic engineering tool for metabolic engineering in Z. mobilis. Furthermore, the two best strains could be used as novel host for further metabolic engineering in cellulosic ethanol or future biorefinery. Importantly, the two strains may also be used as novel-tolerant model organisms for the genetic mechanism on the "omics" level, which will provide some useful information for inverse metabolic engineering.

Introduction: CRevolution 2: origin and evolution of the Colorado River System II

USGS Publications Warehouse

Karlstrom, Karl E.; Beard, L. Sue; House, P. Kyle; Young, Richard A.; Aslan, Andres; Billingsley, George; Pederson, Joel

2012-01-01

A 2010 Colorado River symposium held in Flagstaff, Arizona, in May 2010, had 70 participants who engaged in intense debate about the origin and evolution of the Colorado River system. This symposium, built on two previous decadal scientific meetings, focused on forging scientific consensus where possible, while also articulating continued controversies regarding the Cenozoic evolution of the Colorado River System and the landscapes of the Colorado Plateau–Rocky Mountain region that it drains. New developments involved hypotheses that Neogene mantle flow is driving plateau tilting and differential uplift, with consensus that multidisciplinary studies involving differential incision studies and additional geochronology and thermochronology are needed to test the relative importance of tectonic and geomorphic forcings in shaping the spectacular landscapes of the Colorado Plateau region. In addition to the scientific goals, the meeting participants emphasized the iconic status of Grand Canyon for geosciences, and the importance of good communication between the research community, the geoscience education/interpretation community, the public, and the media. Building on a century-long tradition, this region still provides a globally important natural laboratory for studies of the interactions of erosion and tectonism in the shaping landscape of elevated plateaus.

Calgary Laboratory Services

PubMed Central

2015-01-01

Calgary Laboratory Services provides global hospital and community laboratory services for Calgary and surrounding areas (population 1.4 million) and global academic support for the University of Calgary Cumming School of Medicine. It developed rapidly after the Alberta Provincial Government implemented an austerity program to address rising health care costs and to address Alberta’s debt and deficit in 1994. Over roughly the next year, all hospital and community laboratory test funding within the province was put into a single budget, fee codes for fee-for-service test billing were closed, roughly 40% of the provincial laboratory budget was cut, and roughly 40% of the pathologists left the province of Alberta. In Calgary, in the face of these abrupt changes in the laboratory environment, private laboratories, publicly funded hospital laboratories and the medical school department precipitously and reluctantly merged in 1996. The origin of Calgary Laboratory Services was likened to an “unhappy shotgun marriage” by all parties. Although such a structure could save money by eliminating duplicated services and excess capacity and could provide excellent city-wide clinical service by increasing standardization, it was less clear whether it could provide strong academic support for a medical school. Over the past decade, iterations of the Calgary Laboratory Services model have been implemented or are being considered in other Canadian jurisdictions. This case study analyzes the evolution of Calgary Laboratory Services, provides a metric-based review of academic performance over time, and demonstrates that this model, essentially arising as an unplanned experiment, has merit within a Canadian health care context. PMID:28725754

Ages and Growth of the Continental Crust from Radiogenic Isotopes

NASA Astrophysics Data System (ADS)

Patchett, P. J.; Samson, S. D.

2003-12-01

The development and application of radiogenic isotopes to dating of geologic events, and to questions of growth, evolution, and recycling processes in the continental crust are mature areas of scientific inquiry. By this we understand that many of the approaches used to date rocks and constrain the evolution of the continents are well established, even routine, and that the scope of data available on age and evolution of continents is very large. This is not to say that new approaches have not been developed in recent years, or that new approaches and/or insights cannot be developed in the future. However, the science of continental crustal evolution is definitely a domain where many of the problems are well defined, the power of the techniques used to solve them are well known, and the limitations of field and laboratory databases, as well as the preserved geologic record, are understood.From the very early days of crustal evolution studies, it was innovations and improvements in laboratory techniques that drove the pace of discovery (e.g., Holmes, 1911; Nier, 1939). This remained true through all the increments in capability reviewed in this chapter, up to the present day. Thus, continental crustal evolution is an area of Earth science where a species of very laboratory-oriented investigator, the "radiogenic isotope geologist" or "geochronologist," has made major advances, even breakthroughs, in understanding. This is true in spite of the fact that many of the individuals of the species may have lacked field expertise, or even more than a primitive level of geologic background. Because design and building of instruments like radiation detectors or mass spectrometers requires a knowledge of physics, many of the early practitioners of rock dating were physicists, like Alfred Nier (cited above). Since the 1970s, essentially all mass spectrometers have been constructed by specialized commercial firms, and the level of physics expertise among isotope geologists has been lower. These firms, based mainly (but not exclusively) in and around Manchester, England, and Bremen, Germany, have spearheaded technical innovations in mass spectrometry. Isotope geology researchers are one group of consumers for this technology, along with chemists, nuclear-weapon laboratories and nuclear-power generating facilities. Today, the vast majority of isotope geology researchers are derived from geological backgrounds.This chapter will briefly review historical aspects of the development of radiogenic isotope geology as applied to continents. Some details, references and cross-references to other chapters in this volume will be provided for most major radiogenic isotopic methods, and for applications of these. However, this chapter will ultimately concentrate on two major approaches that dominate the research field today: (i) crustal tectonic and magmatic ages from U-Pb dating of accessory minerals like zircon; and (ii) crustal differentiation and growth from neodymium isotopic determinations on total rocks.The sheer amount of data available from continental areas, and the pace of data acquisition today, places any geographically constrained compilation in the impossible category for a chapter like this one. In this chapter, the state of the art in both geochronology and crustal origins will be illustrated by selected examples, not by global compilations or comprehensive discussions of each region that has been studied. Nevertheless, some remarks about the availability of data from different parts of the world need to be made. As with other areas of geology, biology, and botany, the parts of the world that have been longest settled by western civilization have the best data coverage for both ages of continental rocks, and their origins and evolution. Thus, Western Europe, Canada, the USA and Australia have generally somewhat thorough coverage. More limited data have become available from Eastern Europe, Greenland, Central and South America, Africa, Asia, and Antarctica. Some of these data have been produced by groups based in those regions, but much of the data published between 1970 and today have been driven by studies based in, and funded from, western countries. Availability of state-of-the-art results for ages of crust and its evolution are low in Antarctica and Greenland, where climate and ice cover limit work, and in South America, Africa, and parts of Asia, where studies have been sporadic, and are certainly limited in some cases by political instability. This general situation is now changing, however. Two parts of the world where results for ages of orogenic belts and for crustal evolution in general are accumulating more rapidly since about 1990 are China and Russia; this is connected with growth of modern isotope geology facilities in those countries. Understanding of global continent growth and evolution is limited in critical respects by the large regions of the world that are poorly dated. Therefore, gradual improvement of the state of knowledge of less accessible parts of the continents will bring significant benefits, even though the conceptual issues may be understood to a large extent.

Evolution of male coloration during a post-Pleistocene radiation of Bahamas mosquitofish (Gambusia hubbsi).

PubMed

Martin, Ryan A; Riesch, Rüdiger; Heinen-Kay, Justa L; Langerhans, R Brian

2014-02-01

Sexual signal evolution can be complex because multiple factors influence the production, transmission, and reception of sexual signals, as well as receivers' responses to them. To grasp the relative importance of these factors in generating signal diversity, we must simultaneously investigate multiple selective agents and signaling traits within a natural system. We use the model system of the radiation of Bahamas mosquitofish (Gambusia hubbsi) inhabiting blue holes to test the effects of resource availability, male body size and other life-history traits, key aspects of the transmission environment, sex ratio, and predation risk on variation in multiple male color traits. Consistent with previous work examining other traits in this system, several color traits have repeatedly diverged between predation regimes, exhibiting greater elaboration in the absence of predators. However, other factors proved influential as well, with variation in resource levels, body size, relative testes size, and background water color being especially important for several color traits. For one prominent signaling trait, orange dorsal fins, we further confirmed a genetic basis underlying population differences using a laboratory common-garden experiment. We illustrate a promising approach for gaining a detailed understanding of the many contributing factors in the evolution of multivariate sexual signals. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Adaptive laboratory evolution of Klebsiella pneumoniae for improving 2,3-butanediol production

PubMed Central

Li, Hongbiao; Zhang, Genlin; Dang, Yanyan

2016-01-01

ABSTRACT Microbial production of 2,3-butanediol is limited by the toxic components in the lignocellulose hydrolysate. To improve the 2,3-butanediol production via Klebsiella pneumoniae from cotton stalk hydrolysate, a method coupling a high tolerance of strain and detoxification of the hydrolysate was thus investigated in this study. The strain tolerance of K. pneumoniae to the cotton stalk hydrolysate was improved via an adaptive laboratory evolution, which involved a stepwise increase in the hydrolysate concentration in the medium. Compared with the initial strain, the resulting strain increased the biomass 3.2-fold in a medium of 20 g/L hydrolysate and produced 10.45 g/L of 2,3-butanediol at an optimal concentration of 60 g/L hydrolysate. After detoxification of cotton stalk hydrolysate, the cell metabolism of K. pneumoniae was further promoted, and the 2,3-butanediol production increased by 1.2 folds. Using fed-batch fermentation, the concentration of 2,3-butanediol reached 35.5 g/L with a yield of 0.43 g/g. The results demonstrated that the bioconversion of low-cost cotton stalk hydrolysate into 2,3-butanediol improves the economics of microbial 2,3-butanediol production. PMID:27442598

An Astrophysical Laboratory: Understanding and Exploiting the Young Massive Cluster Westerlund 1

NASA Astrophysics Data System (ADS)

Clark, S.; Negueruela, I.; Ritchie, B.; Najarro, P.; Langer, N.; Crowther, P.; Bartlett, L.; Fenech, D.; González-Fernández, C.; Goodwin, S.; Lohr, M.; Prinja, R.

2015-03-01

Westerlund 1 provides a unique opportunity to probe the physics of massive stars, from birth to death and beyond, as well as the formation and evolution of a super star cluster that appears destined to evolve into a globular cluster. We highlight the result of current studies of this cluster, its diverse stellar constituents and immediate environment, concluding with a summary of future research avenues enabled by ESO facilities.

The problems of Prochloron. [evolution of green algae

NASA Technical Reports Server (NTRS)

Lewin, R. A.

1983-01-01

Prokaryotic green algae (prochlorophytes), which contain chlorophylls a and b but no bilin pigments, may be phylogenetically related to ancestral chloroplasts if symbiogenesis occurred. They may be otherwise related to eukaryotic chlorophytes. They could have evolved from cyanophytes by loss of phycobilin and gain of chlorophyll b synthesis. These possibilities are briefly discussed. Relevant evidence from biochemical studies in many collaborative laboratories is now becoming available for the resolution of such questions.

The evolution of massive stars: bridging the gap in the Local Group

NASA Astrophysics Data System (ADS)

Massey, Philip; Neugent, Kathryn F.; Levesque, Emily M.

2017-09-01

The nearby galaxies of the Local Group can act as our laboratories in helping to bridge the gap between theory and observations. In this review, we will describe the complications of identifying samples of OB stars, yellow and red supergiants, and Wolf-Rayet stars, and what we have so far learned from these studies. This article is part of the themed issue 'Bridging the gap: from massive stars to supernovae'.

A Multiscale Nested Modeling Framework to Simulate the Interaction of Surface Gravity Waves with Nonlinear Internal Gravity Waves

DTIC Science & Technology

2015-09-30

We aim at understanding the impact of tidal , seasonal, and mesoscale variability of the internal wave field and how it influences the surface waves ...Interaction of Surface Gravity Waves with Nonlinear Internal Gravity Waves Lian Shen St. Anthony Falls Laboratory and Department of Mechanical...on studying surface gravity wave evolution and spectrum in the presence of surface currents caused by strongly nonlinear internal solitary waves

Geologic signatures of atmospheric effects on impact cratering on Venus

NASA Technical Reports Server (NTRS)

1996-01-01

Highlights of the research include geologic signatures of impact energy and atmospheric response to crater formation. Laboratory experiments were performed at the NASA Ames Vertical Gun Range (AVGR) to assess the interaction between disrupted impactor and atmosphere during entry, and to assess the energy coupling between impacts and the surrounding atmosphere. The Schlieren imaging at the AVGR was used in combination with Magellan imaging and theoretical studies to study the evolution of the impactor following impact. The Schlieren imaging documented the downrange blast front created by vaporization during oblique impacts. Laboratory experiments allowed assessing the effect of impact angle on coupling efficiency with an atmosphere. And the impact angle's effect on surface blasts and run-out flows allowed the distinction of crater clusters created by simultaneous impacts from those created by isolated regions of older age.

Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains.

PubMed

Hua, Qiang; Joyce, Andrew R; Fong, Stephen S; Palsson, Bernhard Ø

2006-12-05

Experimental evolution is now frequently applied to many biological systems to achieve desired objectives. To obtain optimized performance for metabolite production, a successful strategy has been recently developed that couples metabolic engineering techniques with laboratory evolution of microorganisms. Previously, we reported the growth characteristics of three lactate-producing, adaptively evolved Escherichia coli mutant strains designed by the OptKnock computational algorithm. Here, we describe the use of (13)C-labeled experiments and mass distribution measurements to study the evolutionary effects on the fluxome of these differently designed strains. Metabolic flux ratios and intracellular flux distributions as well as physiological data were used to elucidate metabolic responses over the course of adaptive evolution and metabolic differences among strains. The study of 3 unevolved and 12 evolved engineered strains as well as a wild-type strain suggests that evolution resulted in remarkable improvements in both substrate utilization rate and the proportion of glycolytic flux to total glucose utilization flux. Among three strain designs, the most significant increases in the fraction of glucose catabolized through glycolysis (>50%) and the glycolytic fluxes (>twofold) were observed in phosphotransacetylase and phosphofructokinase 1 (PFK1) double deletion (pta- pfkA) strains, which were likely attributed to the dramatic evolutionary increase in gene expression and catalytic activity of the minor PFK encoded by pfkB. These fluxomic studies also revealed the important role of acetate synthetic pathway in anaerobic lactate production. Moreover, flux analysis suggested that independent of genetic background, optimal relative flux distributions in cells could be achieved faster than physiological parameters such as nutrient utilization rate. (c) 2006 Wiley Periodicals, Inc.

Magnetic field diffusion and dissipation in reversed-field plasmas

NASA Technical Reports Server (NTRS)

Drake, J. F.; Gladd, N. T.; Huba, J. D.

1981-01-01

A diffusion equation is derived which describes the evolution of a magnetic field in a plasma of arbitrary beta and resistivity. The equation is valid for a one-dimensional slab geometry, assumes the plasma remains in quasi-equilibrium throughout its evolution and does not include thermal transport. Scaling laws governing the rate of change of the magnetic energy, particle drift energy, and magnetic flux are calculated. It is found that the magnetic free energy can be substantially larger than the particle drift energy and can be an important energy reservoir in driving plasma instabilities (e.g., the lower-hybrid-drift instability). In addition, the effect of a spatially varying resistivity on the evolution of a reversed-field plasma is studied. The resistivity model used is based upon the anomalous transport properties associated with the nonlocal mode structure of the lower-hybrid-drift instability. The relevance of this research to laboratory plasmas (e.g., theta pinches, reversed-field theta pinches) and space plasmas (e.g., the earth's magnetotail) is discussed.

Evolution of Toxoplasma-PCR methods and practices: a French national survey and proposal for technical guidelines.

PubMed

Roux, Guillaume; Varlet-Marie, Emmanuelle; Bastien, Patrick; Sterkers, Yvon

2018-06-08

The molecular diagnosis of toxoplasmosis lacks standardisation due to the use of numerous methods with variable performance. This diversity of methods also impairs robust performance comparisons between laboratories. The harmonisation of practices by diffusion of technical guidelines is a useful way to improve these performances. The knowledge of methods and practices used for this molecular diagnosis is an essential step to provide guidelines for Toxoplasma-PCR. In the present study, we aimed (i) to describe the methods and practices of Toxoplasma-PCR used by clinical microbiology laboratories in France and (ii) to propose technical guidelines to improve molecular diagnosis of toxoplasmosis. To do so, a yearly self-administered questionnaire-based survey was undertaken in proficient French laboratories from 2008 to 2015, and guidelines were proposed based on the results of those as well as previously published work. This period saw the progressive abandonment of conventional PCR methods, of Toxoplasma-PCR targeting the B1 gene and of the use of two concomitant molecular methods for this diagnosis. The diversity of practices persisted during the study, in spite of the increasing use of commercial kits such as PCR kits, DNA extraction controls and PCR inhibition controls. We also observed a tendency towards the automation of DNA extraction. The evolution of practices did not always go together with an improvement in those, as reported notably by the declining use of Uracil-DNA Glycosylase to avoid carry-over contamination. We here propose technical recommendations which correspond to items explored during the survey, with respect to DNA extraction, Toxoplasma-PCR and good PCR practices. Copyright © 2018 Australian Society for Parasitology. Published by Elsevier Ltd. All rights reserved.

Designing Mission Operations for the Gravity Recovery and Interior Laboratory Mission

NASA Technical Reports Server (NTRS)

Havens, Glen G.; Beerer, Joseph G.

2012-01-01

NASA's Gravity Recovery and Interior Laboratory (GRAIL) mission, to understand the internal structure and thermal evolution of the Moon, offered unique challenges to mission operations. From launch through end of mission, the twin GRAIL orbiters had to be operated in parallel. The journey to the Moon and into the low science orbit involved numerous maneuvers, planned on tight timelines, to ultimately place the orbiters into the required formation-flying configuration necessary. The baseline GRAIL mission is short, only 9 months in duration, but progressed quickly through seven very unique mission phases. Compressed into this short mission timeline, operations activities and maneuvers for both orbiters had to be planned and coordinated carefully. To prepare for these challenges, development of the GRAIL Mission Operations System began in 2008. Based on high heritage multi-mission operations developed by NASA's Jet Propulsion Laboratory and Lockheed Martin, the GRAIL mission operations system was adapted to meet the unique challenges posed by the GRAIL mission design. This paper describes GRAIL's system engineering development process for defining GRAIL's operations scenarios and generating requirements, tracing the evolution from operations concept through final design, implementation, and validation.

The spatial evolution of energetic electrons and plasma waves during the steady state beam plasma discharge

NASA Technical Reports Server (NTRS)

Llobet, X.; Bernstein, W.; Kondradi, A.

1985-01-01

Experiments, involving the injection of energetic (keV) electron beams into the ionosphere-upper atmosphere system from rocket-borne electron guns, have provided evidence for the occurrence of strong beam-plasma interactions (BPI) both near to and remote from the injection point. However, the flight experiments have not provided clear and unambiguous evidence for the basic physical processes which produce the variety of confusing signatures. A laboratory experimental program was initiated to clarify some of a number of ambiguities regarding the obtained results. The present investigation is concerned with some experimental studies of the evolution of both the beam energy spectrum and the local wave amplitude-frequency spectrum at increasing axial distances from the electron gun for a variety of experimental conditions. The results of the studies show that the high frequency beam-plasma interaction represents the most important process.

The Hawaiian bobtail squid (Euprymna scolopes): a model to study the molecular basis of eukaryote-prokaryote mutualism and the development and evolution of morphological novelties in cephalopods.

PubMed

Lee, Patricia N; McFall-Ngai, Margaret J; Callaerts, Patrick; de Couet, H Gert

2009-11-01

The Hawaiian bobtail squid, Euprymna scolopes, is a cephalopod whose small size, short lifespan, rapid growth, and year-round availability make it suitable as a model organism. E. scolopes is studied in three principal contexts: (1) as a model of cephalopod development; (2) as a model of animal-bacterial symbioses; and (3) as a system for studying adaptations of tissues that interact with light. E. scolopes embryos can be obtained continually and can be reared in the laboratory over an entire generation. The embryos and protective chorions are optically clear, facilitating in situ developmental observations, and can be manipulated experimentally. Many molecular protocols have been developed for studying E. scolopes development. This species is best known, however, for its symbiosis with the luminous marine bacterium Vibrio fischeri and has been used to study determinants of symbiont specificity, the influence of symbiosis on development of the squid light organ, and the mechanisms by which a stable association is achieved. Both partners can be grown independently under laboratory conditions, a feature that offers the unusual opportunity to manipulate the symbiosis experimentally. Molecular and genetic tools have been developed for V. fischeri, and a large expressed sequence tag (EST) database is available for the host symbiotic tissues. Additionally, comparisons between light organ form and function to those of the eye can be made. Both types of tissue interact with light, but have divergent embryonic development. As such, they offer an opportunity to study the molecular basis for the evolution of morphological novelties.

The tardigrade Hypsibius dujardini, a new model for studying the evolution of development.

PubMed

Gabriel, Willow N; McNuff, Robert; Patel, Sapna K; Gregory, T Ryan; Jeck, William R; Jones, Corbin D; Goldstein, Bob

2007-12-15

Studying development in diverse taxa can address a central issue in evolutionary biology: how morphological diversity arises through the evolution of developmental mechanisms. Two of the best-studied developmental model organisms, the arthropod Drosophila and the nematode Caenorhabditis elegans, have been found to belong to a single protostome superclade, the Ecdysozoa. This finding suggests that a closely related ecdysozoan phylum could serve as a valuable model for studying how developmental mechanisms evolve in ways that can produce diverse body plans. Tardigrades, also called water bears, make up a phylum of microscopic ecdysozoan animals. Tardigrades share many characteristics with C. elegans and Drosophila that could make them useful laboratory models, but long-term culturing of tardigrades historically has been a challenge, and there have been few studies of tardigrade development. Here, we show that the tardigrade Hypsibius dujardini can be cultured continuously for decades and can be cryopreserved. We report that H. dujardini has a compact genome, a little smaller than that of C. elegans or Drosophila, and that sequence evolution has occurred at a typical rate. H. dujardini has a short generation time, 13-14 days at room temperature. We have found that the embryos of H. dujardini have a stereotyped cleavage pattern with asymmetric cell divisions, nuclear migrations, and cell migrations occurring in reproducible patterns. We present a cell lineage of the early embryo and an embryonic staging series. We expect that these data can serve as a platform for using H. dujardini as a model for studying the evolution of developmental mechanisms.

Effects of shear load on frictional healing

NASA Astrophysics Data System (ADS)

Ryan, K. L.; Marone, C.

2014-12-01

During the seismic cycle of repeated earthquake failure, faults regain strength in a process known as frictional healing. Laboratory studies have played a central role in illuminating the processes of frictional healing and fault re-strengthening. These studies have also provided the foundation for laboratory-derived friction constitutive laws, which have been used extensively to model earthquake dynamics. We conducted laboratory experiments to assess the affect of shear load on frictional healing. Frictional healing is quantified during slide-hold-slide (SHS) tests, which serve as a simple laboratory analog for the seismic cycle in which earthquakes (slide) are followed by interseismic quiescence (hold). We studied bare surfaces of Westerly granite and layers of Westerly granite gouge (thickness of 3 mm) at normal stresses from 4-25 MPa, relative humidity of 40-60%, and loading and unloading velocities of 10-300 μm/s. During the hold period of SHS tests, shear stress on the sample was partially removed to investigate the effects of shear load on frictional healing and to isolate time- and slip-dependent effects on fault healing. Preliminary results are consistent with existing works and indicate that frictional healing increases with the logarithm of hold time and decreases with normalized shear stress τ/τf during the hold. During SHS tests with hold periods of 100 seconds, healing values ranged from (0.013-0.014) for τ/τf = 1 to (0.059-0.063) for τ/τf = 0, where τ is the shear stress during the hold period and τf is the shear stress during steady frictional sliding. Experiments on bare rock surfaces and with natural and synthetic fault gouge materials are in progress. Conventional SHS tests (i.e. τ/τf = 1) are adequately described by the rate and state friction laws. However, previous experiments in granular quartz suggest that zero-stress SHS tests are not well characterized by either the Dieterich or Ruina state evolution laws. We are investigating the processes that produce shear stress dependent frictional healing, alternate forms of the state evolution law, and comparing results for friction of bare rock surfaces and granular fault gouge.

Nonlinear effects associated with fast magnetosonic waves and turbulent magnetic amplification in laboratory and astrophysical plasmas

NASA Astrophysics Data System (ADS)

Tiwary, PremPyari; Sharma, Swati; Sharma, Prachi; Singh, Ram Kishor; Uma, R.; Sharma, R. P.

2016-12-01

This paper presents the spatio-temporal evolution of magnetic field due to the nonlinear coupling between fast magnetosonic wave (FMSW) and low frequency slow Alfvén wave (SAW). The dynamical equations of finite frequency FMSW and SAW in the presence of ponderomotive force of FMSW (pump wave) has been presented. Numerical simulation has been carried out for the nonlinear coupled equations of finite frequency FMSW and SAW. A systematic scan of the nonlinear behavior/evolution of the pump FMSW has been done for one of the set of parameters chosen in this paper, using the coupled dynamical equations. Filamentation of fast magnetosonic wave has been considered to be responsible for the magnetic turbulence during the laser plasma interaction. The results show that the formation and growth of localized structures depend on the background magnetic field but the order of amplification does not get affected by the magnitude of the background magnetic field. In this paper, we have shown the relevance of our model for two different parameters used in laboratory and astrophysical phenomenon. We have used one set of parameters pertaining to experimental observations in the study of fast ignition of laser fusion and hence studied the turbulent structures in stellar environment. The other set corresponds to the study of magnetic field amplification in the clumpy medium surrounding the supernova remnant Cassiopeia A. The results indicate considerable randomness in the spatial structure of the magnetic field profile in both the cases and gives a sufficient indication of turbulence. The turbulent spectra have been studied and the break point has been found around k which is consistent with the observations in both the cases. The nonlinear wave-wave interaction presented in this paper may be important in understanding the turbulence in the laboratory as well as the astrophysical phenomenon.

Fracture induced electromagnetic emissions: extending laboratory findings by observations at the geophysical scale

NASA Astrophysics Data System (ADS)

Potirakis, Stelios M.; Contoyiannis, Yiannis; Kopanas, John; Kalimeris, Anastasios; Antonopoulos, George; Peratzakis, Athanasios; Eftaxias, Konstantinos; Nomicos, Constantinos

2014-05-01

Under natural conditions, it is practically impossible to install an experimental network on the geophysical scale using the same instrumentations as in laboratory experiments for understanding, through the states of stress and strain and their time variation, the laws that govern the friction during the last stages of EQ generation, or to monitor (much less to control) the principal characteristics of a fracture process. Fracture-induced electromagnetic emissions (EME) in a wide range of frequency bands are sensitive to the micro-structural chances. Thus, their study constitutes a nondestructive method for the monitoring of the evolution of damage process at the laboratory scale. It has been suggested that fracture induced MHz-kHz electromagnetic (EM) emissions, which emerge from a few days up to a few hours before the main seismic shock occurrence permit a real time monitoring of the damage process during the last stages of earthquake preparation, as it happens at the laboratory scale. Since the EME are produced both in the case of the laboratory scale fracture and the EQ preparation process (geophysical scale fracture) they should present similar characteristics in these two scales. Therefore, both the laboratory experimenting scientists and the experimental scientists studying the pre-earthquake EME could benefit from each- other's results. Importantly, it is noted that when studying the fracture process by means of laboratory experiments, the fault growth process normally occurs violently in a fraction of a second. However, a major difference between the laboratory and natural processes is the order-of-magnitude differences in scale (in space and time), allowing the possibility of experimental observation at the geophysical scale for a range of physical processes which are not observable at the laboratory scale. Therefore, the study of fracture-induced EME is expected to reveal more information, especially for the last stages of the fracture process, when it is conducted at the geophysical scale. As a characteristic example, we discuss about the case of electromagnetic silence before the global rupture that was first observed in preseismic EME and recently was also observed in the EME measured during laboratory fracture experiments, completely revising the earlier views about the fracture-induced electromagnetic emissions.

An economical model for simulating droplet spectrum evolution in turbulent cloud chambers and wind tunnels

NASA Astrophysics Data System (ADS)

Krueger, Steven; Cantrell, W.; Niedermeier, D.; Shaw, R.; Stratmann, F.

2017-11-01

Although airborne instruments provide detailed information about the microphysical structure of clouds, the measurements provide only a few snapshots of each cloud. Deducing the droplet spectrum evolution from such measurements is next to impossible. We are using two alternative approaches: laboratory studies and numerical simulations. The former relies on a new turbulent cloud chamber (the Pi Chamber) at Michigan Technical University, as well as the first humid turbulent wind tunnel (LACIS-T) at the Leibniz Institute for Tropospheric Research. Both produce conditions for droplet growth (i.e., supersaturation) by mixing saturated vapor at different temperatures. The Pi Chamber produces turbulence by inducing Rayleigh-Bénard convection, while the wind tunnel generates turbulence with a grid. We are using the Explicit Mixing Parcel Model (EMPM) to numerically simulate droplet spectrum evolution in these flows. The EMPM explicitly links turbulent mixing and droplet spectrum evolution by representing a turbulent flow in a 1D domain with the linear eddy model. The EMPM can economically span scales from those of the smallest turbulent eddies to those of the largest. The EMPM grows or evaporates thousands of individual cloud droplets according to their local environments.

Laboratory Evolution of a Biotin-Requiring Saccharomyces cerevisiae Strain for Full Biotin Prototrophy and Identification of Causal Mutations.

PubMed

Bracher, Jasmine M; de Hulster, Erik; Koster, Charlotte C; van den Broek, Marcel; Daran, Jean-Marc G; van Maris, Antonius J A; Pronk, Jack T

2017-08-15

Biotin prototrophy is a rare, incompletely understood, and industrially relevant characteristic of Saccharomyces cerevisiae strains. The genome of the haploid laboratory strain CEN.PK113-7D contains a full complement of biotin biosynthesis genes, but its growth in biotin-free synthetic medium is extremely slow (specific growth rate [μ] ≈ 0.01 h -1 ). Four independent evolution experiments in repeated batch cultures and accelerostats yielded strains whose growth rates (μ ≤ 0.36 h -1 ) in biotin-free and biotin-supplemented media were similar. Whole-genome resequencing of these evolved strains revealed up to 40-fold amplification of BIO1 , which encodes pimeloyl-coenzyme A (CoA) synthetase. The additional copies of BIO1 were found on different chromosomes, and its amplification coincided with substantial chromosomal rearrangements. A key role of this gene amplification was confirmed by overexpression of BIO1 in strain CEN.PK113-7D, which enabled growth in biotin-free medium (μ = 0.15 h -1 ). Mutations in the membrane transporter genes TPO1 and/or PDR12 were found in several of the evolved strains. Deletion of TPO1 and PDR12 in a BIO1 -overexpressing strain increased its specific growth rate to 0.25 h -1 The effects of null mutations in these genes, which have not been previously associated with biotin metabolism, were nonadditive. This study demonstrates that S. cerevisiae strains that carry the basic genetic information for biotin synthesis can be evolved for full biotin prototrophy and identifies new targets for engineering biotin prototrophy into laboratory and industrial strains of this yeast. IMPORTANCE Although biotin (vitamin H) plays essential roles in all organisms, not all organisms can synthesize this vitamin. Many strains of baker's yeast, an important microorganism in industrial biotechnology, contain at least some of the genes required for biotin synthesis. However, most of these strains cannot synthesize biotin at all or do so at rates that are insufficient to sustain fast growth and product formation. Consequently, this expensive vitamin is routinely added to baker's yeast cultures. In this study, laboratory evolution in biotin-free growth medium yielded new strains that grew as fast in the absence of biotin as in its presence. By analyzing the DNA sequences of evolved biotin-independent strains, mutations were identified that contributed to this ability. This work demonstrates full biotin independence of an industrially relevant yeast and identifies mutations whose introduction into other yeast strains may reduce or eliminate their biotin requirements. Copyright © 2017 American Society for Microbiology.

Laboratory Evolution of a Biotin-Requiring Saccharomyces cerevisiae Strain for Full Biotin Prototrophy and Identification of Causal Mutations

PubMed Central

de Hulster, Erik; Koster, Charlotte C.; van den Broek, Marcel; van Maris, Antonius J. A.

2017-01-01

ABSTRACT Biotin prototrophy is a rare, incompletely understood, and industrially relevant characteristic of Saccharomyces cerevisiae strains. The genome of the haploid laboratory strain CEN.PK113-7D contains a full complement of biotin biosynthesis genes, but its growth in biotin-free synthetic medium is extremely slow (specific growth rate [μ] ≈ 0.01 h−1). Four independent evolution experiments in repeated batch cultures and accelerostats yielded strains whose growth rates (μ ≤ 0.36 h−1) in biotin-free and biotin-supplemented media were similar. Whole-genome resequencing of these evolved strains revealed up to 40-fold amplification of BIO1, which encodes pimeloyl-coenzyme A (CoA) synthetase. The additional copies of BIO1 were found on different chromosomes, and its amplification coincided with substantial chromosomal rearrangements. A key role of this gene amplification was confirmed by overexpression of BIO1 in strain CEN.PK113-7D, which enabled growth in biotin-free medium (μ = 0.15 h−1). Mutations in the membrane transporter genes TPO1 and/or PDR12 were found in several of the evolved strains. Deletion of TPO1 and PDR12 in a BIO1-overexpressing strain increased its specific growth rate to 0.25 h−1. The effects of null mutations in these genes, which have not been previously associated with biotin metabolism, were nonadditive. This study demonstrates that S. cerevisiae strains that carry the basic genetic information for biotin synthesis can be evolved for full biotin prototrophy and identifies new targets for engineering biotin prototrophy into laboratory and industrial strains of this yeast. IMPORTANCE Although biotin (vitamin H) plays essential roles in all organisms, not all organisms can synthesize this vitamin. Many strains of baker's yeast, an important microorganism in industrial biotechnology, contain at least some of the genes required for biotin synthesis. However, most of these strains cannot synthesize biotin at all or do so at rates that are insufficient to sustain fast growth and product formation. Consequently, this expensive vitamin is routinely added to baker's yeast cultures. In this study, laboratory evolution in biotin-free growth medium yielded new strains that grew as fast in the absence of biotin as in its presence. By analyzing the DNA sequences of evolved biotin-independent strains, mutations were identified that contributed to this ability. This work demonstrates full biotin independence of an industrially relevant yeast and identifies mutations whose introduction into other yeast strains may reduce or eliminate their biotin requirements. PMID:28600311

Impact-Basin Formation on Mercury: Current Observations and Outstanding Questions

NASA Astrophysics Data System (ADS)

Baker, D. M. H.; Head, J. W.; Fassett, C. I.

2018-05-01

Mercury provides an important laboratory for understanding impact-basin formation on planetary bodies. MESSENGER observations improved our understanding, but much is still unknown about the formation and evolution of basin features.

Models of Protocellular Structure, Function and Evolution

NASA Technical Reports Server (NTRS)

New, Michael H.; Pohorille, Andrew; Szostak, Jack W.; Keefe, Tony; Lanyi, Janos K.; DeVincenzi, Donald L. (Technical Monitor)

2001-01-01

In the absence of any record of protocells, the most direct way to test our understanding, of the origin of cellular life is to construct laboratory models that capture important features of protocellular systems. Such efforts are currently underway in a collaborative project between NASA-Ames, Harvard Medical School and University of California. They are accompanied by computational studies aimed at explaining self-organization of simple molecules into ordered structures. The centerpiece of this project is a method for the in vitro evolution of protein enzymes toward arbitrary catalytic targets. A similar approach has already been developed for nucleic acids in which a small number of functional molecules are selected from a large, random population of candidates. The selected molecules are next vastly multiplied using the polymerase chain reaction.

Website for the Astrochemistry Laboratory, Astrophysics Branch, Space Sciences Division

NASA Technical Reports Server (NTRS)

Sandford, Scott; DeVincenzi, D. (Technical Monitor)

2002-01-01

The Astrochemistry Laboratory in the Astrophysics Branch (SSA) of the Space Sciences Division at NASA's Ames Research Center specializes in the study of extraterrestrial materials and their analogs. The staff has pioneered laboratory studies of space environments including interstellar, cometary, and planetary ices, simulations of the so-called 'Unidentified' Infrared Emission Bands and Diffuse Interstellar Bands using PAHs (Polycyclic Aromatic Hydrocarbons) and PAH-related materials, and has extensive experience with low-temperature spectroscopy and astronomical observation. Important discoveries made by the Astrochemistry Group include: (1) The recognition that polycyclic aromatic hydrocarbons and their ions are common in space; (2) The identification of a major fraction of the known molecular species frozen in interstellar/pre-cometary ices; (3) The recognition that a significant fraction of the carbon in the interstellar medium is carried by both microdiamonds and organic materials; (4) The expansion of the types of molecules expected to be synthesized in interstellar/pre-cometary ices. These could be delivered to the early Earth (or other body) and influence the origin or early evolution of life.

Morphodynamics of Planetary Deserts: A Laboratory Approach

NASA Astrophysics Data System (ADS)

Garcia, A.; Courrech Du Pont, S.; Rodriguez, S.

2014-12-01

Earth deserts show a rich variety of dune shapes from transverse to barchan, star and linear dunes depending on the history of wind regimes (strength and variability) and sand availability [1]. In desert, exposed to one wind direction, dunes perpendicular to the wind direction are found to be transverse or barchans, only sand availability plays a key role on their formation and evolution. However, the evolution time scale of such structures (several years) limits our investigation of their morphodynamics understanding. We use here, a laboratory experiment able to considerably reduce space and time scales by reproducing millimeter to centimeter subaqueous dunes by controlling environmental parameters such as type of wind (multi-winds, bimodal, quasi-bimodal or unidirectional wind) and amount of sediment [2,3]. This set up allows us to characterize more precisely the different modes of dune formation and long-term evolution, and to constrain the physics behind the morphogenesis and dynamics of dunes. Indeed, the formation, evolution and transition between the different dune modes are better understood and quantified thanks to a new setting experiment able to give a remote sediment source in continuous (closer to what happens in terrestrial desert): a sand distributor that controls the input sand flow. Firstly, in a one wind direction conditions, we managed to follow and quantify the growth of the instability of transverse dunes that break into barchans when the sand supply is low and reversely when the sand supply is higher, barchan fields evolve to bars dunes ending to form transverse. The next step will be to perform experiments under two winds conditions in order to better constrain the formation mode of linear dunes, depending also only on the input sand flux. Previous experiments shown that linear "finger" dunes can be triggered by the break of transverse dunes and then the elongating of one barchan's arm [4]. These studies can farther explain more precisely in different wind history and sand supply, these patterns state that should emerge and, by applying the relevant scale law, to apply this laboratory work to terrestrial and planetary (Mars and Titan) desert dynamics. [1] Bagnold R.A. (1941). [2] Hersen P. (2004). [3] Reffet E. (2010). [4] Courrech Du Pont S. et al. (2014).

Origin and evolution of the self-organizing cytoskeleton in the network of eukaryotic organelles.

PubMed

Jékely, Gáspár

2014-09-02

The eukaryotic cytoskeleton evolved from prokaryotic cytomotive filaments. Prokaryotic filament systems show bewildering structural and dynamic complexity and, in many aspects, prefigure the self-organizing properties of the eukaryotic cytoskeleton. Here, the dynamic properties of the prokaryotic and eukaryotic cytoskeleton are compared, and how these relate to function and evolution of organellar networks is discussed. The evolution of new aspects of filament dynamics in eukaryotes, including severing and branching, and the advent of molecular motors converted the eukaryotic cytoskeleton into a self-organizing "active gel," the dynamics of which can only be described with computational models. Advances in modeling and comparative genomics hold promise of a better understanding of the evolution of the self-organizing cytoskeleton in early eukaryotes, and its role in the evolution of novel eukaryotic functions, such as amoeboid motility, mitosis, and ciliary swimming. Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

NASA's Exobiology Program.

PubMed

DeVincenzi, D L

1984-01-01

The goal of NASA's Exobiology Program is to understand the origin, evolution, and distribution of life, and life-related molecules, on Earth and throughout the universe. Emphasis is focused on determining how the rate and direction of these processes were affected by the chemical and physical environment of the evolving planet, as well as by planetary, solar, and astrophysical phenomena. This is accomplished by a multi-disciplinary program of research conducted by over 60 principal investigators in both NASA and university laboratories. Major program thrusts are in the following research areas: biogenic elements; chemical evolution; origin of life; organic geochemistry; evolution of higher life forms; solar system exploration; and the search for extraterrestrial intelligence (SETI).

Continuous in vitro evolution of catalytic function.

PubMed

Wright, M C; Joyce, G F

1997-04-25

A population of RNA molecules that catalyze the template-directed ligation of RNA substrates was made to evolve in a continuous manner in the test tube. A simple serial transfer procedure was used to achieve approximately 300 successive rounds of catalysis and selective amplification in 52 hours. During this time, the population size was maintained against an overall dilution of 3 x 10(298). Both the catalytic rate and amplification rate of the RNAs improved substantially as a consequence of mutations that accumulated during the evolution process. Continuous in vitro evolution makes it possible to maintain laboratory "cultures" of catalytic molecules that can be perpetuated indefinitely.

Continuous in vitro evolution of catalytic function

NASA Technical Reports Server (NTRS)

Wright, M. C.; Joyce, G. F.

1997-01-01

A population of RNA molecules that catalyze the template-directed ligation of RNA substrates was made to evolve in a continuous manner in the test tube. A simple serial transfer procedure was used to achieve approximately 300 successive rounds of catalysis and selective amplification in 52 hours. During this time, the population size was maintained against an overall dilution of 3 x 10(298). Both the catalytic rate and amplification rate of the RNAs improved substantially as a consequence of mutations that accumulated during the evolution process. Continuous in vitro evolution makes it possible to maintain laboratory "cultures" of catalytic molecules that can be perpetuated indefinitely.

The evolution of massive stars: bridging the gap in the Local Group.

PubMed

Massey, Philip; Neugent, Kathryn F; Levesque, Emily M

2017-10-28

The nearby galaxies of the Local Group can act as our laboratories in helping to bridge the gap between theory and observations. In this review, we will describe the complications of identifying samples of OB stars, yellow and red supergiants, and Wolf-Rayet stars, and what we have so far learned from these studies.This article is part of the themed issue 'Bridging the gap: from massive stars to supernovae'. © 2017 The Author(s).

Laboratory reconnection experiments

NASA Astrophysics Data System (ADS)

Grulke, Olaf

Laboratory experiments dedicated for the study of magnetic reconnection have been contributed considerably to a more detailed understanding of the involved processes. Their strength is to disentangle parameter dependencies, to diagnose in detail the plasma and field response, and to form an excellent testbed for the validation of numerical simulations. In the present paper recent results obtained from the new cylindrical reconnection experiment VINETA II are presented. The experimental setup allows to independently vary plasma parameters, reconnection drive strength/timescale, and current sheet amplitude. Current research objectives focus on two major scientific issues: Guide field effects on magnetic reconnection and the evolution of electromagnetic fluctuations. The superimposed homogeneous magnetic guide field has a strong influence on the spatiotemporal evolution of the current sheet, predominantly due to magnetic pitch angle effects, which leads to a strong elongation of the sheet along the separatrices and results in axial gradients of the reconnection rates. Within the current sheet, incoherent electromagnetic fluctuations are observed. Their magnetic signature is characterized by a broad spectrum somewhat centered around the lower-hybrid frequency and extremely short spatial correlation lengths being typically smaller than the local ion sound radius. The fluctuation amplitude correlates with the local current density and, thus, for low guide fields, displays also axial gradients. Despite the quantitatively different parameter regime and geometry the basic fluctuation properties are in good agreement with studies conducted at the MRX experiment (PPPL).

A single frame: imaging live cells twenty-five years ago.

PubMed

Fink, Rachel

2011-07-01

In the mid-1980s live-cell imaging was changed by the introduction of video techniques, allowing new ways to collect and store data. The increased resolution obtained by manipulating video signals, the ability to use time-lapse videocassette recorders to study events that happen over long time intervals, and the introduction of fluorescent probes and sensitive video cameras opened research avenues previously unavailable. The author gives a personal account of this evolution, focusing on cell migration studies at the Marine Biological Laboratory 25 years ago. Copyright © 2011 Wiley-Liss, Inc.

The Francis H. Burr Proton Therapy Center

NASA Astrophysics Data System (ADS)

Flanz, Jay; Kooy, Hanne; DeLaney, Thomas F.

The Francis H. Burr Proton Therapy Center (FHBPTC) is one of the first hospital-based proton therapy (PT) facilities. Its development was the natural evolution of several decades of PT experience of the Massachusetts General Hospital treating patients at the Harvard Cyclotron Laboratory. The operations of the FHBPTC reflect the combined missions of patient care, clinical and physics research, technological developments, and education. This chapter will discuss aspects of the history, evolution, and performance of this unique PT center.

Estimating the time evolution of NMR systems via a quantum-speed-limit-like expression

NASA Astrophysics Data System (ADS)

Villamizar, D. V.; Duzzioni, E. I.; Leal, A. C. S.; Auccaise, R.

2018-05-01

Finding the solutions of the equations that describe the dynamics of a given physical system is crucial in order to obtain important information about its evolution. However, by using estimation theory, it is possible to obtain, under certain limitations, some information on its dynamics. The quantum-speed-limit (QSL) theory was originally used to estimate the shortest time in which a Hamiltonian drives an initial state to a final one for a given fidelity. Using the QSL theory in a slightly different way, we are able to estimate the running time of a given quantum process. For that purpose, we impose the saturation of the Anandan-Aharonov bound in a rotating frame of reference where the state of the system travels slower than in the original frame (laboratory frame). Through this procedure it is possible to estimate the actual evolution time in the laboratory frame of reference with good accuracy when compared to previous methods. Our method is tested successfully to predict the time spent in the evolution of nuclear spins 1/2 and 3/2 in NMR systems. We find that the estimated time according to our method is better than previous approaches by up to four orders of magnitude. One disadvantage of our method is that we need to solve a number of transcendental equations, which increases with the system dimension and parameter discretization used to solve such equations numerically.

Introduction

NASA Astrophysics Data System (ADS)

Kirby, Evan N.

2018-06-01

Dwarf galaxies are excellent laboratories of chemical evolution. Many dwarf galaxies have simple star formation histories with very low average star formation rates. These conditions simplify models of chemical evolution and facilitate the identification of sites of nucleosynthesis. Dwarf galaxies also host extremely metal-poor stars, which sample the ejecta of the first generations of supernovae in the universe. This meeting-in-a-meeting, "Stellar Abundances in Dwarf Galasxies," will recognize the importance of dwarf galaxies in learning about the creation and evolution of the elements. Topics include: * the most metal-poor stars * the connection between dwarf galaxies and the Milky Way halo * dwarf galaxies as the paragons of r-process nucleosynthesis * modern techniques in stellar abundance measurements * recent advances in chemical evolution modelingI will give a very brief introduction to set the stage for the meeting.

Laboratory Investigation of Coal Deformation Behavior and Its Influence on Permeability Evolution During Methane Displacement by CO2

NASA Astrophysics Data System (ADS)

Fan, Jingjing; Feng, Ruimin; Wang, Jin; Wang, Yanbin

2017-07-01

Geological sequestration of CO2 in coal seams is of significant interest to both academia and industry. A thorough laboratory investigation of mechanical and flow behaviors is crucial for understanding the complex response of coalbeds to CO2 injection-enhanced coalbed methane recovery (CO2-ECBM) operation. In this work, systematic experiments were carried out on cylindrical coal core specimens under different uniform confining stresses. The coal deformation caused by variations in effective stress as well as the sorption-induced matrix swelling/shrinkage was monitored. The competitive gas sorption characteristics and permeability evolution during the process of methane displacement by CO2 were also investigated. The measured volumetric strain results indicate that sorption-induced strain is the dominant factor in the coal deformation. The relationship between the volumetric strain and the adsorbed gas volume has been revealed to be a linear function. Experimental results obtained under different stress conditions suggest that higher confining stress suppresses the increase in both volumetric strain and the adsorbed gas volume. Furthermore, both methane displacement and CO2 injection are reduced when applying higher confining stresses. In addition, the permeability enhancement is heavily suppressed at higher confining stress. At a certain confining stress, a characteristic "U-shaped" trend of permeability is presented as a function of decreasing pore pressure. This study contributes to the understanding of coal deformation and its impact on permeability evolution under uniformly stressed condition, which has practical significance for CO2 sequestration and CO2-ECBM operation in the Qinshui basin.

THE EFFECT OF MERCURY CONTROLS ON WALLBOARD MANUFACTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sandra Meischen

2004-07-01

Pending EPA regulations may mandate 70 to 90% mercury removal efficiency from utility flue gas. A mercury control option is the trapping of oxidized mercury in wet flue gas desulfurization systems (FGD). The potential doubling of mercury in the FGD material and its effect on mercury volatility at temperatures common to wallboard manufacture is a concern that could limit the growing byproduct use of FGD material. Prediction of mercury fate is limited by lack of information on the mercury form in the FGD material. The parts per billion mercury concentrations prevent the identification of mercury compounds by common analytical methods.more » A sensitive analytical method, cold vapor atomic fluorescence, coupled with leaching and thermodecomposition methods were evaluated for their potential to identify mercury compounds in FGD material. The results of the study suggest that the mercury form is dominated by the calcium sulfate matrix and is probably associated with the sulfate form in the FGD material. Additionally, to determine the effect of high mercury concentration FGD material on wallboard manufacture, a laboratory FGD unit was built to trap the oxidized mercury generated in a simulated flue gas. Although the laboratory prepared FGD material did not contain the mercury concentrations anticipated, further thermal tests determined that mercury begins to evolve from FGD material at 380 to 390 F, consequently dropping the drying temperature should mitigate mercury evolution if necessary. Mercury evolution is also diminished as the weight of the wallboard sample increased. Consequently, mercury evolution may not be a significant problem in wallboard manufacture.« less

MSL SAM-Like Evolved Gas Analyses of Si-rich Amorphous Materials

NASA Technical Reports Server (NTRS)

McAdam, Amy; Knudson, Christine; Sutter, Brad; Andrejkovicova, Slavka; Archer, P. Douglas; Franz, Heather; Eigenbrode, Jennifer; Morris, Richard; Ming, Douglas; Sun, Vivian;

The SCITEAS experiment: Optical characterizations of sublimating icy planetary analogues

NASA Astrophysics Data System (ADS)

Pommerol, A.; Jost, B.; Poch, O.; El-Maarry, M. R.; Vuitel, B.; Thomas, N.

2015-05-01

We have designed and built a laboratory facility to investigate the spectro-photometric and morphologic properties of different types of ice-bearing planetary surface analogs and follow their evolution upon exposure to a low pressure and low temperature environment. The results obtained with this experiment are used to verify and improve our interpretations of current optical remote-sensing datasets. They also provide valuable information for the development and operation of future optical instruments. The Simulation Chamber for Imaging the Temporal Evolution of Analogue Samples (SCITEAS) is a small thermal vacuum chamber equipped with a variety of ports and feedthroughs that permit both in-situ and remote characterizations as well as interacting with the sample. A large quartz window located directly above the sample is used to observe its surface from outside with a set of visible and near-infrared cameras. The sample holder can be easily and quickly inserted and removed from the chamber and is compatible with the other measurement facilities of the Laboratory for Outflow Studies of Sublimating Materials (LOSSy) at the University of Bern. We report here on the results of two of the first experiments performed in the SCITEAS chamber. In the first experiment, fine-grained water ice mixed with dark organic and mineral matter was left to sublime in vacuum and at low temperature, simulating the evolution of the surface of a comet nucleus approaching the Sun. We observed and characterized the formation and evolution of a crust of refractory organic and mineral matter at the surface of the sample and linked the evolution of its structure and texture to its spectro-photometric properties. In the second experiment, a frozen soil was prepared by freezing a mixture of smectite mineral and water. The sample was then left to sublime for 6 h to simulate the loss of volatiles from icy soil at high latitudes on Mars. Colour images were produced using the definitions of the filters foreseen for the CaSSIS imager of the Exomars/TGO mission in order to prepare future science operations.

Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification

PubMed Central

Knibbe, Carole; Schneider, Dominique; Beslon, Guillaume

2017-01-01

Metabolic cross-feeding interactions between microbial strains are common in nature, and emerge during evolution experiments in the laboratory, even in homogeneous environments providing a single carbon source. In sympatry, when the environment is well-mixed, the reasons why emerging cross-feeding interactions may sometimes become stable and lead to monophyletic genotypic clusters occupying specific niches, named ecotypes, remain unclear. As an alternative to evolution experiments in the laboratory, we developed Evo2Sim, a multi-scale model of in silico experimental evolution, equipped with the whole tool case of experimental setups, competition assays, phylogenetic analysis, and, most importantly, allowing for evolvable ecological interactions. Digital organisms with an evolvable genome structure encoding an evolvable metabolic network evolved for tens of thousands of generations in environments mimicking the dynamics of real controlled environments, including chemostat or batch culture providing a single limiting resource. We show here that the evolution of stable cross-feeding interactions requires seasonal batch conditions. In this case, adaptive diversification events result in two stably co-existing ecotypes, with one feeding on the primary resource and the other on by-products. We show that the regularity of serial transfers is essential for the maintenance of the polymorphism, as it allows for at least two stable seasons and thus two temporal niches. A first season is externally generated by the transfer into fresh medium, while a second one is internally generated by niche construction as the provided nutrient is replaced by secreted by-products derived from bacterial growth. In chemostat conditions, even if cross-feeding interactions emerge, they are not stable on the long-term because fitter mutants eventually invade the whole population. We also show that the long-term evolution of the two stable ecotypes leads to character displacement, at the level of the metabolic network but also of the genome structure. This difference of genome structure between both ecotypes impacts the stability of the cross-feeding interaction, when the population is propagated in chemostat conditions. This study shows the crucial role played by seasonality in temporal niche partitioning and in promoting cross-feeding subgroups into stable ecotypes, a premise to sympatric speciation. PMID:28358919

Evolutionary Relationships Based on Cellular Structure.

ERIC Educational Resources Information Center

Van Winkle, Lon J.

1979-01-01

This laboratory exercise integrates the topics of cell structure, classification of living organisms, and evolution. It is suitable for secondary or college biology courses and was used in an interdisciplinary science course for nonscience majors. (BB)

Microbial Evolution at High Pressure: Deep Sea and Laboratory Studies

NASA Astrophysics Data System (ADS)

Bartlett, D. H.

2011-12-01

Elevated hydrostatic pressures are present in deep-sea and deep-Earth environments where this physical parameter has influenced the evolution and characteristics of life. Piezophilic (high-pressure-adapted) microbes have been isolated from diverse deep-sea settings, and would appear likely to occur in deep-subsurface habitats as well. In order to discern the factors enabling life at high pressure my research group has explored these adaptations at various levels, most recently including molecular analyses of deep-sea trench communities, and through the selective evolution of the model microbe Escherichia coli in the laboratory to progressively higher pressures. Much of the field work has focused on the microbes present in the deeper portions of the Puerto Rico Trench (PRT)and in the Peru-Chile Trench (PCT), from 6-8.5 km below the sea surface (~60-85 megapascals pressure). Culture-independent phylogenetic data on the Bacteria and Archaea present on particles or free-living, along with data on the microeukarya present was complemented with genomic analyses and the isolation and characterization of microbes in culture. Metagenomic analyses of the PRT revealed increased genome sizes and an overrepresentation at depth of sulfatases for the breakdown of sulfated polysaccharides and specific categories of transporters, including those associated with the transport of diverse cations or carboxylate ions, or associated with heavy metal resistance. Single-cell genomic studies revealed several linneages which recruited to the PRT metagenome far better than existing marine microbial genome sequences. analyses. Novel high pressure culture approaches have yielded new piezophiles including species preferring very low nutrient levels, those living off of hydrocarbons, and those adapted to various electron donor/electron acceptor combinations. In order to more specifically focus on functions enabling life at increased pressure selective evolution experiments were performed with Escherichia coli during laboratory cultivation. More than 60 subcultures were obtained at progressively increasing hydrostatic pressures ranging from 28 - 62 megapascals. A strain isolated from the 63rd subculture displayed dramatically improved growth over the parental strain at 59 megapascals but reduced growth rate relative to the parental strain at atmospheric pressure. The mutant also produced far more unsaturated fatty acids than its parent and also acquired the ability to upregulate these fatty acids species at elevated pressure. Solexa sequencing revealed mutations within an operon (acpP operon) governing unsaturated fatty acid production, and these have been examined as a function of generation at high pressure. These and other results indicate that a large number and variety of microbes are adapted to life at high pressure, that the selective constraints of pressure increases up to ~60 megapascals are not so severe as to preclude the rapid evolution to a piezotolerant phenotype, and that the production of increased levels of unsaturated fatty acids correlates with adaptation to this stressor. This work was supported by grants from the National Science Foundation (EF-0801793 and EF-0827051) and the National Aeronautics and Space Administration (NASA SSC NNX10AR13G).

Form of an evolutionary tradeoff affects eco-evolutionary dynamics in a predator-prey system.

PubMed

Kasada, Minoru; Yamamichi, Masato; Yoshida, Takehito

2014-11-11

Evolution on a time scale similar to ecological dynamics has been increasingly recognized for the last three decades. Selection mediated by ecological interactions can change heritable phenotypic variation (i.e., evolution), and evolution of traits, in turn, can affect ecological interactions. Hence, ecological and evolutionary dynamics can be tightly linked and important to predict future dynamics, but our understanding of eco-evolutionary dynamics is still in its infancy and there is a significant gap between theoretical predictions and empirical tests. Empirical studies have demonstrated that the presence of genetic variation can dramatically change ecological dynamics, whereas theoretical studies predict that eco-evolutionary dynamics depend on the details of the genetic variation, such as the form of a tradeoff among genotypes, which can be more important than the presence or absence of the genetic variation. Using a predator-prey (rotifer-algal) experimental system in laboratory microcosms, we studied how different forms of a tradeoff between prey defense and growth affect eco-evolutionary dynamics. Our experimental results show for the first time to our knowledge that different forms of the tradeoff produce remarkably divergent eco-evolutionary dynamics, including near fixation, near extinction, and coexistence of algal genotypes, with quantitatively different population dynamics. A mathematical model, parameterized from completely independent experiments, explains the observed dynamics. The results suggest that knowing the details of heritable trait variation and covariation within a population is essential for understanding how evolution and ecology will interact and what form of eco-evolutionary dynamics will result.

How river rocks round: resolving the shape-size paradox.

PubMed

Domokos, Gabor; Jerolmack, Douglas J; Sipos, Andras Á; Török, Akos

2014-01-01

River-bed sediments display two universal downstream trends: fining, in which particle size decreases; and rounding, where pebble shapes evolve toward ellipsoids. Rounding is known to result from transport-induced abrasion; however many researchers argue that the contribution of abrasion to downstream fining is negligible. This presents a paradox: downstream shape change indicates substantial abrasion, while size change apparently rules it out. Here we use laboratory experiments and numerical modeling to show quantitatively that pebble abrasion is a curvature-driven flow problem. As a consequence, abrasion occurs in two well-separated phases: first, pebble edges rapidly round without any change in axis dimensions until the shape becomes entirely convex; and second, axis dimensions are then slowly reduced while the particle remains convex. Explicit study of pebble shape evolution helps resolve the shape-size paradox by reconciling discrepancies between laboratory and field studies, and enhances our ability to decipher the transport history of a river rock.

Laboratory investigations

NASA Technical Reports Server (NTRS)

Russell, Ray W.

1988-01-01

Laboratory studies related to cometary grains and the nuclei of comets can be broken down into three areas which relate to understanding the spectral properties, the formation mechanisms, and the evolution of grains and nuclei: (1) Spectral studies to be used in the interpretation of cometary spectra; (2) Sample preparation experiments which may shed light on the physical nature and history of cometary grains and nuclei by exploring the effects on grain emissivities resulting from the ways in which the samples are created; and (3) Grain processing experiments which should provide insight on the interaction of cometary grains with the environment in the immediate vicinity of the cometary nucleus as the comet travels from the Oort cloud through perihelion, and perhaps even suggestions regarding the relationship between interstellar grains and cometary matter. A summary is presented with a different view of lab experiments than is found in the literature, concentrating on measurement techniques and sample preparations especially relevant to cometary dust.

A laboratory study of ion energization by EIC waves and subsequent upstreaming along diverging magnetic field lines

NASA Technical Reports Server (NTRS)

Cartier, S. L.; Dangelo, N.; Merlino, R. L.

1986-01-01

A laboratory study related to energetic upstreaming ions in the ionosphere-magnetosphere system is described. The experiment was carried out in a cesium Q machine plasma with a region of nonuniform magnetic field. Electrostatic ion cyclotron waves were excited by drawing an electron current to a small biased exciter electrode. In the presence of the instability, ions are heated in the direction perpendicular to B. Using a gridded retarding potential ion energy analyzer, the evolution of the ion velocity distribution was followed as the ions passed through the heating region and subsequently flowed out along the diverging B field lines. As expected, the heated ions transfer their energy from perpendicular to parallel motion as they move through the region of diverging B field. Both their parallel thermal energy and the parallel drift energy increase at the expense of the perpendicular energy.

How River Rocks Round: Resolving the Shape-Size Paradox

PubMed Central

Domokos, Gabor; Jerolmack, Douglas J.; Sipos, Andras Á.; Török, Ákos

2014-01-01

River-bed sediments display two universal downstream trends: fining, in which particle size decreases; and rounding, where pebble shapes evolve toward ellipsoids. Rounding is known to result from transport-induced abrasion; however many researchers argue that the contribution of abrasion to downstream fining is negligible. This presents a paradox: downstream shape change indicates substantial abrasion, while size change apparently rules it out. Here we use laboratory experiments and numerical modeling to show quantitatively that pebble abrasion is a curvature-driven flow problem. As a consequence, abrasion occurs in two well-separated phases: first, pebble edges rapidly round without any change in axis dimensions until the shape becomes entirely convex; and second, axis dimensions are then slowly reduced while the particle remains convex. Explicit study of pebble shape evolution helps resolve the shape-size paradox by reconciling discrepancies between laboratory and field studies, and enhances our ability to decipher the transport history of a river rock. PMID:24533132

Post-genome integrative biology: so that's what they call clinical science.

PubMed

Rees, J

2001-01-01

Medical science is increasingly dominated by slogans, a characteristic reflecting its growing bureaucratic and corporate structure. Chief amongst these slogans is the idea that genomics will transform the public health. I believe this view is mistaken. Using studies of the genetics of skin cancer and the genetics of skin pigmentation, I describe how recent discoveries have contributed to our understanding of these topics and of human evolution. I contrast these discoveries with insights gained from other approaches, particularly those based on clinical studies. The 'IKEA model of medical advance'--you just do the basic science in the laboratory and self-assemble in the clinic--is not only damaging to clinical advance, but reflects a widespread ignorance about the nature of disease and how clinical discovery arises. We need to think more about disease and less about genes; more in the clinic and less in the laboratory.

Vermicomposting of winery wastes: a laboratory study.

PubMed

Nogales, Rogelio; Cifuentes, Celia; Benítez, Emilio

2005-01-01

In Mediterranean countries, millions of tons of wastes from viticulture and winery industries are produced every year. This study describes the ability of the earthworm Eisenia andrei to compost different winery wastes (spent grape marc, vinasse biosolids, lees cakes, and vine shoots) into valuable agricultural products. The evolution of earthworm biomass and enzyme activities was tracked for 16 weeks of vermicomposting, on a laboratory scale. Increases in earthworm biomass for all winery wastes proved lower than in manure. Changes in hydrolytic enzymes and overall microbial activities during the vermicomposting process indicated the biodegradation of the winery wastes. Vermicomposting improved the agronomic value of the winery wastes by reducing the C:N ratio, conductivity and phytotoxicity, while increasing the humic materials, nutrient contents, and pH in all cases. Thus, winery wastes show potential as raw substrates in vermicomposting, although further research is needed to evaluate the feasibility of such wastes in large-scale vermicomposting systems.

The Williams' legacy: A critical reappraisal of his nine predictions about the evolution of senescence.

PubMed

Gaillard, Jean-Michel; Lemaître, Jean-François

2017-12-01

Williams' evolutionary theory of senescence based on antagonistic pleiotropy has become a landmark in evolutionary biology, and more recently in biogerontology and evolutionary medicine. In his original article, Williams launched a set of nine "testable deductions" from his theory. Although some of these predictions have been repeatedly discussed, most have been overlooked and no systematic evaluation of the whole set of Williams' original predictions has been performed. For the sixtieth anniversary of the publication of the Williams' article, we provide an updated evaluation of all these predictions. We present the pros and cons of each prediction based on recent accumulation of both theoretical and empirical studies performed in the laboratory and in the wild. From our viewpoint, six predictions are mostly supported by our current knowledge at least under some conditions (although Williams' theory cannot thoroughly explain why for some of them). Three predictions, all involving the timing of senescence, are not supported. Our critical review of Williams' predictions highlights the importance of William's contribution and clearly demonstrates that, 60 years after its publication, his article does not show any sign of senescence. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

Modelling the evolution of a comet subsurface: implications for 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Guilbert-Lepoutre, Aurélie; Rosenberg, Eric D.; Prialnik, Dina; Besse, Sébastien

2016-11-01

Modelling the evolution of comets is a complex task aiming at providing constraints on physical processes and internal properties that are inaccessible to observations, although they could potentially bring key elements to our understanding of the origins of these primitive objects. This field has made a tremendous step forward in the post-Giotto area, owing to detailed space- and ground-based observations, as well as detailed laboratory simulations of comet nuclei. In this paper, we review studies that we believe are significant for interpreting the observations of 67P/Churyumov-Gerasimenko by the ESA/Rosetta mission, and provide new calculations where needed. These studies hold a strong statistical significance, which is exactly what is needed for this comet with an orbital evolution that cannot be traced back accurately for more than hundreds of years. We show that radial and lateral differentiation may have occurred on 67P's chaotic path to the inner Solar system, and that internal inhomogeneities may result in an erratic activity pattern. Finally, we discuss the origins of circular depressions seen on several comets including 67P, and suggest that they could be considered as evidence of the past processing of subsurface layers.

Study of particle evolution from Composition B-3 detonation by time-resolved small angle x-ray scattering

NASA Astrophysics Data System (ADS)

Huber, R.; Podlesak, D.; Dattelbaum, D.; Firestone, M.; Gustavsen, R.; Jensen, B.; Ringstrand, B.; Watkins, E.; Bagge-Hansen, M.; Hodgin, R.; Lauderbach, L.; Willey, T.; van Buuren, T.; Graber, T.; Rigg, P.; Sinclair, N.; Seifert, S.

2017-06-01

High explosive (HE) detonations produce an assortment of gases (CO, CO2, N2) and solid carbon products (nanodiamond, graphite). The evolution of solid carbon particles, within the chemical reaction zone, help to propel the detonation wave forward. Due to the violent nature and short reaction times during HE detonations, experimental observation are limited. Through time-resolved small angle x-ray scattering (TRSAXS) we are able to observed nanocarbon formation on nanosecond time scales. This TRSAXS setup is the first of its kind in the United States at Argonne National Laboratory at the Advanced Photon Source in the Dynamic Compression Sector. From the empirical and analytical analysis of the x-ray scattering of an in-line detonation we are able to temporally follow morphology and size. Two detonation geometries were studied for the HE Comp B-3 (40% TNT/60% RDX), producing steady and overdriven conditions. Steady wave particle evolution plateaued by 2 microseconds, where overdriven condition particle size decreases at the collision of the two shock fronts then plateaus. Post detonation soot is also analyzed to confirm size and shape of nanocarbon formation from Comp B-3 detonations. LA-UR-17-21443.

Evaluation of a coupled dispersion and aerosol process model against measurements near a major road

NASA Astrophysics Data System (ADS)

Pohjola, M. A.; Pirjola, L.; Karppinen, A.; Härkönen, J.; Ketzel, M.; Kukkonen, J.

2007-02-01

A field measurement campaign was conducted near a major road "Itäväylä" in an urban area in Helsinki in 17-20 February 2003. Aerosol measurements were conducted using a mobile laboratory "Sniffer" at various distances from the road, and at an urban background location. Measurements included particle size distribution in the size range of 7 nm-10 μm (aerodynamic diameter) by the Electrical Low Pressure Impactor (ELPI) and in the size range of 3-50 nm (mobility diameter) by Scanning Mobility Particle Sizer (SMPS), total number concentration of particles larger than 3 nm detected by an ultrafine condensation particle counter (UCPC), temperature, relative humidity, wind speed and direction, driving route of the mobile laboratory, and traffic density on the studied road. In this study, we have compared measured concentration data with the predictions of the road network dispersion model CAR-FMI used in combination with an aerosol process model MONO32. The vehicular exhaust emissions, and atmospheric dispersion and transformation of fine and ultrafine particles was evaluated within the distance scale of 200 m (corresponding to a time scale of a couple of minutes). We computed the temporal evolution of the number concentrations, size distributions and chemical compositions of various particle size classes. The atmospheric dilution rate of particles is obtained from the roadside dispersion model CAR-FMI. Considering the evolution of total number concentration, dilution was shown to be the most important process. The influence of coagulation and condensation on the number concentrations of particle size modes was found to be negligible at this distance scale. Condensation was found to affect the evolution of particle diameter in the two smallest particle modes. The assumed value of the concentration of condensable organic vapour of 1012 molecules cm-3 was shown to be in a disagreement with the measured particle size evolution, while the modelling runs with the concentration of condensable organic vapour of 109-1010 molecules cm-3 resulted in particle sizes that were closest to the measured values.

Structural evolution of detonation carbon in composition B by X-ray scattering

DOE PAGES

Firestone, Millicent A.; Dattelbaum, Dana M.; Podlesak, David W.; ...

2015-01-01

Products evolved during the detonation of high explosives are primarily a collection of molecular gases and solid carbon condensates. Electron microscopy studies have revealed that detonation carbon (soot) can contain a variety of unique carbon particles possessing novel morphologies, such as carbon onions and ribbons. Despite these observations very little is known about the conditions that leads to the production of these novel carbon nanoparticles. A fuller understanding on conditions that generate such nanoparticles would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Herein, we report initial results employing time-resolvedmore » X-ray scattering (TRSAXS) measurements to monitor nanosecond time-scale carbon products formed from detonating Composition B (60% TNT, 40% RDX). These studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). Lastly, analysis of the collected scattering patterns reveals the presence of fractal multi-layered carbon condensates.« less

Structural evolution of detonation carbon in composition B by X-ray scattering

NASA Astrophysics Data System (ADS)

Firestone, Millicent A.; Dattelbaum, Dana M.; Podlesak, David W.; Gustavsen, Richard L.; Huber, Rachel C.; Ringstrand, Bryan S.; Watkins, Erik B.; Jensen, Brian; Willey, Trevor; Lauderbauch, Lisa; Hodgin, Ralph; Bagge-Hansen, Michael; van Buuren, Tony; Seifert, Sönke; Graber, Timothy

2017-01-01

Products evolved during the detonation of high explosives are primarily a collection of molecular gases and solid carbon condensates. Electron microscopy studies have revealed that detonation carbon (soot) can contain a variety of unique carbon particles possessing novel morphologies, such as carbon onions and ribbons. Despite these observations very little is known about the conditions that leads to the production of these novel carbon nanoparticles. A fuller understanding on conditions that generate such nanoparticles would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Herein, we report initial results employing time-resolved X-ray scattering (TRSAXS) measurements to monitor nanosecond time-scale carbon products formed from detonating Composition B (60% TNT, 40% RDX). These studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). Analysis of the collected scattering patterns reveals the presence of fractal multi-layered carbon condensates.

A numerical and experimental study on the nonlinear evolution of long-crested irregular waves

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goullet, Arnaud; Choi, Wooyoung; Division of Ocean Systems Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305-701

2011-01-15

The spatial evolution of nonlinear long-crested irregular waves characterized by the JONSWAP spectrum is studied numerically using a nonlinear wave model based on a pseudospectral (PS) method and the modified nonlinear Schroedinger (MNLS) equation. In addition, new laboratory experiments with two different spectral bandwidths are carried out and a number of wave probe measurements are made to validate these two wave models. Strongly nonlinear wave groups are observed experimentally and their propagation and interaction are studied in detail. For the comparison with experimental measurements, the two models need to be initialized with care and the initialization procedures are described. Themore » MNLS equation is found to approximate reasonably well for the wave fields with a relatively smaller Benjamin-Feir index, but the phase error increases as the propagation distance increases. The PS model with different orders of nonlinear approximation is solved numerically, and it is shown that the fifth-order model agrees well with our measurements prior to wave breaking for both spectral bandwidths.« less

Laboratory studies of cometary ice analogues

NASA Astrophysics Data System (ADS)

Schmitt, B.; Espinasse, S.; Grim, R. J. A.; Greenberg, J. M.; Klinger, J.

1989-12-01

Laboratory studies were performed in order to simulate the physico-chemical processes that are likely to occur in the near surface layers of short and intermediate period comets. Pure H2O ice as well as CO:H2O, CO2:H2O, CH4:H2O, CO:CO2:H2O, and NH3:H2O ice mixtures were studied in the temperature range between 10 and 180 K. The evolution of the composition of ice mixtures, the crystallization of H2O ice as well as the formation and decompostion of clathrate hydrate by different processes were studied as a function of temperature and time. Using the results together with numerical modeling, predictions are made about the survival of amorphous ice, CO, CO2, CH4, and NH3 in the near surface layers of short period comets. The likeliness of finding clathrate and molecular hydrates is discussed. It is proposed that the analytical methods developed here could be fruitfully adapted to the analysis of returned comet samples.

Final Technical Report: Magnetic Reconnection in High-Energy Laser-Produced Plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Germaschewski, Kai; Fox, William; Bhattacharjee, Amitava

This report describes the final results from the DOE Grant DE-SC0007168, “Fast Magnetic Reconnection in HED Laser-Produced Plasmas.” The recent generation of laboratory high-energy-density physics facilities has opened significant physics opportunities for experimentally modeling astrophysical plasmas. The goal of this proposal is to use these new tools to study fundamental problems in plasma physics and plasma astrophysics. Fundamental topics in this area involve study of the generation, amplification, and fate of magnetic fields, which are observed to pervade the plasma universe and govern its evolution. This project combined experiments at DOE laser facilities with kinetic plasma simulation to study thesemore » processes. The primary original goal of the project was to study magnetic reconnection using a new experimental platform, colliding magnetized laser-produced plasmas. However through a series of fortuitous discoveries, the work broadened out to allow significant advancement on multiple topics in laboratory astrophysics, including magnetic reconnection, Weibel instability, and collisionless shocks.« less

Molecular and mass spectroscopic analysis of isotopically labeled organic residues

NASA Technical Reports Server (NTRS)

Mendoza-Gomez, Celia X.; Greenberg, J. Mayo; Mccain, P.; Ferris, J. P.; Briggs, R.; Degroot, M. S.; Schutte, Willem A.

1989-01-01

Experimental studies aimed at understanding the evolution of complex organic molecules on interstellar grains were performed. The photolysis of frozen gas mixtures of various compositions containing H2O, CO, NH3, and CH4 was studied. These species were chosen because of their astrophysical importance as deducted from observational as well as theoretical studies of ice mantles on interstellar grains. These ultraviolet photolyzed ices were warmed up in order to produce refractory organic molecules like the ones formed in molecular clouds when the icy mantles are being irradiated and warmed up either by a nearby stellar source or impulsive heating. The laboratory studies give estimates of the efficiency of production of such organic material under interstellar conditions. It is shown that the gradual carbonization of organic mantles in the diffuse cloud phase leads to higher and higher visual absorptivity - yellow residues become brown in the laboratory. The obtained results can be applied to explaining the organic components of comets and their relevance to the origin of life.

Modeling Drift Compression in an Integrated Beam Experiment for Heavy-Ion-Fusion

NASA Astrophysics Data System (ADS)

Sharp, W. M.; Barnard, J. J.; Friedman, A.; Grote, D. P.; Celata, C. M.; Yu, S. S.

2003-10-01

The Integrated Beam Experiment (IBX) is an induction accelerator being designed to further develop the science base for heavy-ion fusion. The experiment is being developed jointly by Lawrence Berkeley National Laboratory, Lawrence Livermore National Laboratory, and Princeton Plasma Physics Laboratory. One conceptual approach would first accelerate a 0.5-1 A beam of singly charged potassium ions to 5 MeV, impose a head-to-tail velocity tilt to compress the beam longitudinally, and finally focus the beam radiallly using a series of quadrupole lenses. The lengthwise compression is a critical step because the radial size must be controlled as the current increases, and the beam emittance must be kept minimal. The work reported here first uses the moment-based model HERMES to design the drift-compression beam line and to assess the sensitivity of the final beam profile to beam and lattice errors. The particle-in-cell code WARP is then used to validate the physics design, study the phase-space evolution, and quantify the emittance growth.

Fundamental Study on the Dynamics of Heterogeneity-Enhanced CO2 Gas Evolution in the Shallow Subsurface During Possible Leakage from Deep Geologic Storage Sites

NASA Astrophysics Data System (ADS)

Plampin, M. R.; Lassen, R. N.; Sakaki, T.; Pawar, R.; Jensen, K.; Illangasekare, T. H.

2013-12-01

A concern for geologic carbon sequestration is the potential for CO2 stored in deep geologic formations to leak upward into shallow freshwater aquifers where it can have potentially detrimental impacts to the environment and human health. Understanding the mechanisms of CO2 exsolution, migration and accumulation (collectively referred to as 'gas evolution') in the shallow subsurface is critical to predict and mitigate the environmental impacts. During leakage, CO2 can move either as free-phase or as a dissolved component of formation brine. CO2 dissolved in brine may travel upward into shallow freshwater systems, and the gas may be released from solution. In the shallow aquifer, the exsolved gas may accumulate near interfaces between soil types, and/or create flow paths that allow the gas to escape through the vadose zone to the atmosphere. The process of gas evolution in the shallow subsurface is controlled by various factors, including temperature, dissolved CO2 concentration, water pressure, background water flow rate, and geologic heterogeneity. However, the conditions under which heterogeneity controls gas phase evolution have not yet been precisely defined and can therefore not yet be incorporated into models used for environmental risk assessment. The primary goal of this study is to conduct controlled laboratory experiments to help fill this knowledge gap. With this as a goal, a series of intermediate-scale laboratory experiments were conducted to observe CO2 gas evolution in porous media at multiple scales. Deionized water was saturated with dissolved CO2 gas under a specified pressure (the saturation pressure) before being injected at a constant volumetric flow rate into the bottom of a 1.7 meter-tall by 5.7 centimeter-diameter column or a 2.4 meter-tall by 40 centimeter-wide column that were both filled with sand in various heterogeneous packing configurations. Both test systems were initially saturated with fresh water and instrumented with soil moisture sensors to monitor the evolution of gas phase through time by measuring the average water content in small sampling volumes of soil. Tensiometers allowed for observation of water pressure through space and time in the test systems, and a computer-interfaced electronic scale continuously monitored the outflow of water from the top of the two test columns. Several packing configurations with five different types of sands were used in order to test the effects of various pore size contrasts and interface shapes on the evolution of the gas phase near soil texture transitions in the heterogeneous packings. Results indicate that: (1) heterogeneity affects gas phase evolution patterns within a predictable range of conditions quantified by the newly introduced term 'oversaturation,' (2) soil transition interfaces where less permeable material overlies more permeable material have a much more pronounced effect on gas evolution than interfaces with opposite orientations, and (3) anticlines (or stratigraphic traps) cause significantly greater gas accumulation than horizontal interfaces. Further work is underway to apply these findings to more realistic, two-dimensional scenarios, and to assess how well existing numerical models can capture these processes.

Simultaneous Modeling of the Thermophysical and Dynamical Evolution of Saturn's Icy Satellites

NASA Astrophysics Data System (ADS)

Johnson, Torrence V.; Castillo-Rogez, J. C.; Matson, D. L.; Sotin, C.; Lunine, J. I.

2007-10-01

This poster describes the methodology we use in modeling the geophysical and dynamical evolution of the icy satellites of Saturn. For each of the model's modules we identify the relevant physical, chemical, mineralogical, and material science principals that are used. Then we present the logic of the modeling approach and its implementation. The main modules handle thermal, geological, and dynamical processes. Key parameters such as temperature, thermal conductivity, rigidity, viscosity, Young's modulus, dynamic Love number k2, and frequency-dependent dissipation factor Q(ω) are transmitted between the modules in the course of calculating an evolutionary sequence. Important initial conditions include volatile and nonvolatile compositions, formation time, rotation period and shape, orbital eccentricity and semimajor axis, and temperature and porosity profiles. The thermal module treats the thermal effects of accretion, melting of ice, differentiation and tidal dissipation. Heat transfer is by conduction only because in the cases thus far studied the criterion for convection is not met. The geological module handles the evolution of porosity, shape, and lithospheric strength. The dynamical module calculates despinning and orbital evolution. Chief outputs include the orbital evolution, the interior temperatures as a function of time and depth, and other parameters of interest such as k2, and Q(ω) as a function of time. This work was carried out at the Jet Propulsion Laboratory-California Institute of Technology, under contract to NASA.

Pharmaceutical process chemistry: evolution of a contemporary data-rich laboratory environment.

PubMed

Caron, Stéphane; Thomson, Nicholas M

2015-03-20

Over the past 20 years, the industrial laboratory environment has gone through a major transformation in the industrial process chemistry setting. In order to discover and develop robust and efficient syntheses and processes for a pharmaceutical portfolio with growing synthetic complexity and increased regulatory expectations, the round-bottom flask and other conventional equipment familiar to a traditional organic chemistry laboratory are being replaced. The new process chemistry laboratory fosters multidisciplinary collaborations by providing a suite of tools capable of delivering deeper process understanding through mechanistic insights and detailed kinetics translating to greater predictability at scale. This transformation is essential to the field of organic synthesis in order to promote excellence in quality, safety, speed, and cost efficiency in synthesis.

Laser welding by dental Nd:YAG device

NASA Astrophysics Data System (ADS)

Fornaini, Carlo; Bertrand, Caroline; Merigo, Elisabetta; Bonanini, Mauro; Rocca, Jean-Paul; Nammour, Samir

2009-06-01

Welding laser was introduced in jewellery during years 70 and, just after, was successfully used also by dental technicians. Welding laser gives a great number of advantages, versus traditional welding and, for this reason, this procedure had a great diffusion in the technician laboratories and stimulated the companies to put in the market more and more evolutes appliances. Some aspects, such great dimensions, high costs and delivery system today still characterize these machines by fixed lenses, which have strictly limited its use only to technician laboratories. The aim of this study is to demonstrate the possibility, by using a fibber-delivered laser normally utilized in the dental office, to make, by dentist himself in his office, welding on different metals and to evaluate advantages and possibilities of this new technique.

Fully coupled approach to modeling shallow water flow, sediment transport, and bed evolution in rivers

NASA Astrophysics Data System (ADS)

Li, Shuangcai; Duffy, Christopher J.

2011-03-01

Our ability to predict complex environmental fluid flow and transport hinges on accurate and efficient simulations of multiple physical phenomenon operating simultaneously over a wide range of spatial and temporal scales, including overbank floods, coastal storm surge events, drying and wetting bed conditions, and simultaneous bed form evolution. This research implements a fully coupled strategy for solving shallow water hydrodynamics, sediment transport, and morphological bed evolution in rivers and floodplains (PIHM_Hydro) and applies the model to field and laboratory experiments that cover a wide range of spatial and temporal scales. The model uses a standard upwind finite volume method and Roe's approximate Riemann solver for unstructured grids. A multidimensional linear reconstruction and slope limiter are implemented, achieving second-order spatial accuracy. Model efficiency and stability are treated using an explicit-implicit method for temporal discretization with operator splitting. Laboratory-and field-scale experiments were compiled where coupled processes across a range of scales were observed and where higher-order spatial and temporal accuracy might be needed for accurate and efficient solutions. These experiments demonstrate the ability of the fully coupled strategy in capturing dynamics of field-scale flood waves and small-scale drying-wetting processes.

Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations.

PubMed

Frenkel, Evgeni M; McDonald, Michael J; Van Dyken, J David; Kosheleva, Katya; Lang, Gregory I; Desai, Michael M

2015-09-08

Identifying the mechanisms that create and maintain biodiversity is a central challenge in biology. Stable diversification of microbial populations often requires the evolution of differences in resource utilization. Alternatively, coexistence can be maintained by specialization to exploit spatial heterogeneity in the environment. Here, we report spontaneous diversification maintained by a related but distinct mechanism: crowding avoidance. During experimental evolution of laboratory Saccharomyces cerevisiae populations, we observed the repeated appearance of "adherent" (A) lineages able to grow as a dispersed film, in contrast to their crowded "bottom-dweller" (B) ancestors. These two types stably coexist because dispersal reduces interference competition for nutrients among kin, at the cost of a slower maximum growth rate. This tradeoff causes the frequencies of the two types to oscillate around equilibrium over the course of repeated cycles of growth, crowding, and dispersal. However, further coevolution of the A and B types can perturb and eventually destroy their coexistence over longer time scales. We introduce a simple mathematical model of this "semistable" coexistence, which explains the interplay between ecological and evolutionary dynamics. Because crowded growth generally limits nutrient access in biofilms, the mechanism we report here may be broadly important in maintaining diversity in these natural environments.

A three-dimensional stratigraphic model for aggrading submarine channels based on laboratory experiments, numerical modeling, and sediment cores

NASA Astrophysics Data System (ADS)

Limaye, A. B.; Komatsu, Y.; Suzuki, K.; Paola, C.

2017-12-01

Turbidity currents deliver clastic sediment from continental margins to the deep ocean, and are the main driver of landscape and stratigraphic evolution in many low-relief, submarine environments. The sedimentary architecture of turbidites—including the spatial organization of coarse and fine sediments—is closely related to the aggradation, scour, and lateral shifting of channels. Seismic stratigraphy indicates that submarine, meandering channels often aggrade rapidly relative to lateral shifting, and develop channel sand bodies with high vertical connectivity. In comparison, the stratigraphic architecture developed by submarine, braided is relatively uncertain. We present a new stratigraphic model for submarine braided channels that integrates predictions from laboratory experiments and flow modeling with constraints from sediment cores. In the laboratory experiments, a saline density current developed subaqueous channels in plastic sediment. The channels aggraded to form a deposit with a vertical scale of approximately five channel depths. We collected topography data during aggradation to (1) establish relative stratigraphic age, and (2) estimate the sorting patterns of a hypothetical grain size distribution. We applied a numerical flow model to each topographic surface and used modeled flow depth as a proxy for relative grain size. We then conditioned the resulting stratigraphic model to observed grain size distributions using sediment core data from the Nankai Trough, offshore Japan. Using this stratigraphic model, we establish new, quantitative predictions for the two- and three-dimensional connectivity of coarse sediment as a function of fine-sediment fraction. Using this case study as an example, we will highlight outstanding challenges in relating the evolution of low-relief landscapes to the stratigraphic record.

Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2

PubMed Central

Lamers, Susanna L.; Weiner, Brian; Ray, Stuart C.; Colgrove, Robert C.; Diaz, Fernando; Jing, Lichen; Wang, Kening; Saif, Sakina; Young, Sarah; Henn, Matthew; Laeyendecker, Oliver; Tobian, Aaron A. R.; Cohen, Jeffrey I.; Koelle, David M.; Quinn, Thomas C.; Knipe, David M.

2015-01-01

ABSTRACT Herpes simplex virus 2 (HSV-2), the principal causative agent of recurrent genital herpes, is a highly prevalent viral infection worldwide. Limited information is available on the amount of genomic DNA variation between HSV-2 strains because only two genomes have been determined, the HG52 laboratory strain and the newly sequenced SD90e low-passage-number clinical isolate strain, each from a different geographical area. In this study, we report the nearly complete genome sequences of 34 HSV-2 low-passage-number and laboratory strains, 14 of which were collected in Uganda, 1 in South Africa, 11 in the United States, and 8 in Japan. Our analyses of these genomes demonstrated remarkable sequence conservation, regardless of geographic origin, with the maximum nucleotide divergence between strains being 0.4% across the genome. In contrast, prior studies indicated that HSV-1 genomes exhibit more sequence diversity, as well as geographical clustering. Additionally, unlike HSV-1, little viral recombination between HSV-2 strains could be substantiated. These results are interpreted in light of HSV-2 evolution, epidemiology, and pathogenesis. Finally, the newly generated sequences more closely resemble the low-passage-number SD90e than HG52, supporting the use of the former as the new reference genome of HSV-2. IMPORTANCE Herpes simplex virus 2 (HSV-2) is a causative agent of genital and neonatal herpes. Therefore, knowledge of its DNA genome and genetic variability is central to preventing and treating genital herpes. However, only two full-length HSV-2 genomes have been reported. In this study, we sequenced 34 additional HSV-2 low-passage-number and laboratory viral genomes and initiated analysis of the genetic diversity of HSV-2 strains from around the world. The analysis of these genomes will facilitate research aimed at vaccine development, diagnosis, and the evaluation of clinical manifestations and transmission of HSV-2. This information will also contribute to our understanding of HSV evolution. PMID:26018166

What Is a Primate?

ERIC Educational Resources Information Center

McGee, Elizabeth

2003-01-01

Describes a series of hands-on experiments that engage students in hypothesis testing and promotes active learning of the concepts of evolution and adaptation. Laboratory exercises demonstrate how features of the hands and eyes distinguish primates from other mammals. (SOE)

Natural selection on immune defense: A field experiment.

PubMed

Langeloh, Laura; Behrmann-Godel, Jasminca; Seppälä, Otto

2017-02-01

Predicting the evolution of phenotypic traits requires an understanding of natural selection on them. Despite its indispensability in the fight against parasites, selection on host immune defense has remained understudied. Theory predicts immune traits to be under stabilizing selection due to associated trade-offs with other fitness-related traits. Empirical studies, however, report mainly positive directional selection. This discrepancy could be caused by low phenotypic variation in the examined individuals and/or variation in host resource level that confounds trade-offs in empirical studies. In a field experiment where we maintained Lymnaea stagnalis snails individually in cages in a lake, we investigated phenotypic selection on two immune defense traits, phenoloxidase (PO)-like activity and antibacterial activity, in hemolymph. We used a diverse laboratory population and manipulated snail resource level by limiting their food supply. For six weeks, we followed immune activity, growth, and two fitness components, survival and fecundity of snails. We found that PO-like activity and growth were under stabilizing selection, while antibacterial activity was under positive directional selection. Selection on immune traits was mainly driven by variation in survival. The form of selection on immune defense apparently depends on the particular trait, possibly due to its importance for countering the present parasite community. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Evolution of Gas Cell Targets for Magnetized Liner Inertial Fusion Experiments at the Sandia National Laboratories PECOS Test Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paguio, R. R.; Smith, G. E.; Taylor, J. L.

Z-Beamlet (ZBL) experiments conducted at the PECOS test facility at Sandia National Laboratories (SNL) investigated the nonlinear processes in laser plasma interaction (or laserplasma instabilities LPI) that complicate the deposition of laser energy by enhanced absorption, backscatter, filamentation and beam-spray that can occur in large-scale laser-heated gas cell targets. These targets and experiments were designed to provide better insight into the physics of the laser preheat stage of the Magnetized Liner Inertial Fusion (MagLIF) scheme being tested on the SNL Z-machine. The experiments aim to understand the tradeoffs between laser spot size, laser pulse shape, laser entrance hole (LEH) windowmore » thickness, and fuel density for laser preheat. Gas cell target design evolution and fabrication adaptations to accommodate the evolving experiment and scientific requirements are also described in this paper.« less

Evolution of Gas Cell Targets for Magnetized Liner Inertial Fusion Experiments at the Sandia National Laboratories PECOS Test Facility

DOE PAGES

Paguio, R. R.; Smith, G. E.; Taylor, J. L.; ...

2017-12-04

Z-Beamlet (ZBL) experiments conducted at the PECOS test facility at Sandia National Laboratories (SNL) investigated the nonlinear processes in laser plasma interaction (or laserplasma instabilities LPI) that complicate the deposition of laser energy by enhanced absorption, backscatter, filamentation and beam-spray that can occur in large-scale laser-heated gas cell targets. These targets and experiments were designed to provide better insight into the physics of the laser preheat stage of the Magnetized Liner Inertial Fusion (MagLIF) scheme being tested on the SNL Z-machine. The experiments aim to understand the tradeoffs between laser spot size, laser pulse shape, laser entrance hole (LEH) windowmore » thickness, and fuel density for laser preheat. Gas cell target design evolution and fabrication adaptations to accommodate the evolving experiment and scientific requirements are also described in this paper.« less

Laboratory Annealing Experiments Of Refractory Silicate Grain Analogs Using Differential Scanning Calorimetry

NASA Technical Reports Server (NTRS)

Kimura, Yuki; Nuth, Joseph A., III; Tsukamota, Katsuo; Kaito, Chihiro

2010-01-01

Exothermic reactions during the annealing of laboratory synthesized amorphous magnesium-bearing silicate particles used as grain analogs of cosmic dust were detected by differential scanning calorimetry (DSC) in air. With infrared spectroscopy and transmission electron microscopy, we show that cosmic dust could possibly undergo fusion to larger particles, with oxidation of magnesium silicide and crystallization of forsterite as exothermic reactions in the early solar system. The reactions begin at approximately 425, approximately 625, and approximately 1000 K, respectively, and the reaction energies (enthalpies) are at least 727, 4151, and 160.22 J per gram, respectively. During the crystallization of forsterite particles, the spectral evolution of the 10 micrometer feature from amorphous to crystalline was observed to begin at lower temperature than the crystallization temperature of 1003 K. During spectral evolution at lower temperature, nucleation and/or the formation of nanocrystallites of forsterite at the surface of the grain analogs was observed.

Evolution of Quality Assurance for Clinical Immunohistochemistry in the Era of Precision Medicine - Part 2: Immunohistochemistry Test Performance Characteristics.

PubMed

Torlakovic, Emina E; Cheung, Carol C; D'Arrigo, Corrado; Dietel, Manfred; Francis, Glenn D; Gilks, C Blake; Hall, Jacqueline A; Hornick, Jason L; Ibrahim, Merdol; Marchetti, Antonio; Miller, Keith; van Krieken, J Han; Nielsen, Soren; Swanson, Paul E; Vyberg, Mogens; Zhou, Xiaoge; Taylor, Clive R

2017-02-01

All laboratory tests have test performance characteristics (TPCs), whether or not they are explicitly known to the laboratorian or the pathologist. TPCs are thus also an integral characteristic of immunohistochemistry (IHC) tests and other in situ, cell-based molecular assays such as DNA or RNA in situ hybridization or aptamer-based testing. Because of their descriptive, in situ, cell-based nature, IHC tests have a limited repertoire of appropriate TPCs. Although only a few TPCs are relevant to IHC, proper selection of informative TPCs is nonetheless essential for the development of and adherence to appropriate quality assurance measures in the IHC laboratory. This paper describes the TPCs that are relevant to IHC testing and emphasizes the role of TPCs in the validation of IHC tests. This is part 2 of the 4-part series "Evolution of Quality Assurance for Clinical Immunohistochemistry in the Era of Precision Medicine."

["What an ideal clinical microbiological laboratory should be"--from the position of medical technologist].

PubMed

Nagasawa, M

2000-01-01

The evolution of the microbiology laboratory is necessary for correspondence to the transfiguration of infection and contribution to clinical applications. Especially, the correspondence of emergency tests such as smear strain and antigen detection, the report added value and the infection surveillance in team medical treatment are indispensable. Also, medical technologists need to be knowledge able about techniques related to infection overall, and participation in infection diagnosis and social responsibility are indispensable.

The Moon; twenty years later

USGS Publications Warehouse

Kerr, R. A.

1989-01-01

The 20th anniversary of the first landing on the Moon occurred on July 21, 1989. The vast majority of the Moon rocks collected by the Apollo mission astronauts await further study in the continuing effort to unravel the origin and evolution of Earth's nearest neighbor. Not that the 382-kilogram treasure trove of lunar samples has been gathering dust in the Planetary Materials Laboratory at the Johnson Space Center in Houston. It is just that lunar scientists are being very sparing in their use of the rocks. 

The general entity of life: a cybernetic approach.

PubMed

Bielecki, Andrzej

2015-06-01

Life, not only in the well-known context of biochemical metabolism but also in the context of hypothetical life synthesized laboratorially or possibly found on other planets, is considered in this paper. The three-component information-energetic-structural irreducible processing in autonomous systems is the core of the proposed approach. The cybernetic organization of a general entity of life--the alivon--is postulated. The crucial properties of life and evolution are derived from the proposed approach. Information encoded in biological structures is also studied.

Insight into the molecular composition of laboratory organic residues produced from interstellar/pre-cometary ice analogues using very high resolution mass spectrometry

NASA Astrophysics Data System (ADS)

Danger, G.; Fresneau, A.; Abou Mrad, N.; de Marcellus, P.; Orthous-Daunay, F.-R.; Duvernay, F.; Vuitton, V.; Le Sergeant d'Hendecourt, L.; Thissen, R.; Chiavassa, T.

2016-09-01

Experimental simulations in the laboratory may provide important information about the chemical evolution occurring in various astrophysical objects such as extraterrestrial ices. Interstellar or (pre)cometary ice analogues made of H2O, CH3OH, and NH3 at 77 K, when subjected to an energetic process (VUV photons, electrons or ions) and then warmed-up to room temperature, lead, in the laboratory, to the formation of an organic residue. In this paper we expand our previous analysis of the residues in order to obtain a better insight into their molecular content. Data analyses show that three different chemical groups are present in the residue in the negative electrospray ionization (ESI) mode: CHN, CHO and CHNOsbnd whereas only two groups are detected in the positive ESI mode: CHN and CHNO. In both cases, the CHNO group is the most abundant. The application of specific data treatment shows that residue mainly contains aliphatic linear molecules or cyclic structures connected to unsaturated chemical functions such as esters, carboxylic acids, amides or aldehydes. In lower abundances, some molecules do present aromatic structures. The comparison of our residue with organic compounds detected in the Murchison meteorite gives an interesting match, which suggests that laboratory simulation of interstellar ice chemistry is relevant to understand astrophysical organic matter evolution.

The nematode Pristionchus pacificus as a model system for integrative studies in evolutionary biology.

PubMed

Sommer, Ralf J; McGaughran, Angela

2013-05-01

Comprehensive studies of evolution have historically been hampered by the division among disciplines. Now, as biology moves towards an '-omics' era, it is more important than ever to tackle the evolution of function and form by considering all those research areas involved in the regulation of phenotypes. Here, we review recent attempts to establish the nematode Pristionchus pacificus as a model organism that allows integrative studies of development and evo-devo, with ecology and population genetics. Originally developed for comparative study with the nematode Caenorhabditis elegans, P. pacificus provided insight into developmental pathways including dauer formation, vulva and gonad development, chemosensation, innate immunity and neurobiology. Its subsequent discovery across a wide geographic distribution in association with scarab beetles enabled its evaluation in a biogeographic context. Development of an evolutionary field station on La Réunion Island, where P. pacificus is present in high abundance across a number of widespread habitat types, allows examination of the microfacets of evolution - processes of natural selection, adaptation and drift among populations can now be examined in this island setting. The combination of laboratory-based functional studies with fieldwork in P. pacificus has the long-term prospective to provide both proximate (mechanistic) and ultimate (evolutionary and ecological) causation and might therefore help to overcome the long-term divide between major areas in biology. © 2013 Blackwell Publishing Ltd.

Multimodal sensorimotor system in unicellular zoospores of a fungus.

PubMed

Swafford, Andrew J M; Oakley, Todd H

2018-01-19

Complex sensory systems often underlie critical behaviors, including avoiding predators and locating prey, mates and shelter. Multisensory systems that control motor behavior even appear in unicellular eukaryotes, such as Chlamydomonas , which are important laboratory models for sensory biology. However, we know of no unicellular opisthokonts that control motor behavior using a multimodal sensory system. Therefore, existing single-celled models for multimodal sensorimotor integration are very distantly related to animals. Here, we describe a multisensory system that controls the motor function of unicellular fungal zoospores. We found that zoospores of Allomyces arbusculus exhibit both phototaxis and chemotaxis. Furthermore, we report that closely related Allomyces species respond to either the chemical or the light stimuli presented in this study, not both, and likely do not share this multisensory system. This diversity of sensory systems within Allomyces provides a rare example of a comparative framework that can be used to examine the evolution of sensory systems following the gain/loss of available sensory modalities. The tractability of Allomyces and related fungi as laboratory organisms will facilitate detailed mechanistic investigations into the genetic underpinnings of novel photosensory systems, and how multisensory systems may have functioned in early opisthokonts before multicellularity allowed for the evolution of specialized cell types. © 2018. Published by The Company of Biologists Ltd.

Adaptation of the autotrophic acetogen Sporomusa ovata to methanol accelerates the conversion of CO2 to organic products.

PubMed

Tremblay, Pier-Luc; Höglund, Daniel; Koza, Anna; Bonde, Ida; Zhang, Tian

2015-11-04

Acetogens are efficient microbial catalysts for bioprocesses converting C1 compounds into organic products. Here, an adaptive laboratory evolution approach was implemented to adapt Sporomusa ovata for faster autotrophic metabolism and CO2 conversion to organic chemicals. S. ovata was first adapted to grow quicker autotrophically with methanol, a toxic C1 compound, as the sole substrate. Better growth on different concentrations of methanol and with H2-CO2 indicated the adapted strain had a more efficient autotrophic metabolism and a higher tolerance to solvent. The growth rate on methanol was increased 5-fold. Furthermore, acetate production rate from CO2 with an electrode serving as the electron donor was increased 6.5-fold confirming that the acceleration of the autotrophic metabolism of the adapted strain is independent of the electron donor provided. Whole-genome sequencing, transcriptomic, and biochemical studies revealed that the molecular mechanisms responsible for the novel characteristics of the adapted strain were associated with the methanol oxidation pathway and the Wood-Ljungdahl pathway of acetogens along with biosynthetic pathways, cell wall components, and protein chaperones. The results demonstrate that an efficient strategy to increase rates of CO2 conversion in bioprocesses like microbial electrosynthesis is to evolve the microbial catalyst by adaptive laboratory evolution to optimize its autotrophic metabolism.

Facilitation of environmental adaptation and evolution by epigenetic phenotype variation: insights from clonal, invasive, polyploid, and domesticated animals

PubMed Central

Vogt, Günter

2017-01-01

Abstract There is increasing evidence, particularly from plants, that epigenetic mechanisms can contribute to environmental adaptation and evolution. The present article provides an overview on this topic for animals and highlights the special suitability of clonal, invasive, hybrid, polyploid, and domesticated species for environmental and evolutionary epigenetics. Laboratory and field studies with asexually reproducing animals have shown that epigenetically diverse phenotypes can be produced from the same genome either by developmental stochasticity or environmental induction. The analysis of invasions revealed that epigenetic phenotype variation may help to overcome genetic barriers typically associated with invasions such as bottlenecks and inbreeding. Research with hybrids and polyploids established that epigenetic mechanisms are involved in consolidation of speciation by contributing to reproductive isolation and restructuring of the genome in the neo-species. Epigenetic mechanisms may even have the potential to trigger speciation but evidence is still meager. The comparison of domesticated animals and their wild ancestors demonstrated heritability and selectability of phenotype modulating DNA methylation patterns. Hypotheses, model predictions, and empirical results are presented to explain how epigenetic phenotype variation could facilitate adaptation and speciation. Clonal laboratory lineages, monoclonal invaders, and adaptive radiations of different evolutionary age seem particularly suitable to empirically test the proposed ideas. A respective research agenda is presented. PMID:29492304

Evolution of fore-arc and back-arc sedimentary basins with focus on the Japan subduction system and its analogues

NASA Astrophysics Data System (ADS)

Sato, Hiroshi; Ishiyama, Tatsuya; Matenco, Liviu; Nader, Fadi Henri

2017-07-01

The International Lithosphere Program (ILP) seeks to elucidate the nature, dynamics, origin and evolution of the lithosphere through international, multidisciplinary geoscience research projects and coordinating committees (Cloetingh and Negendank, 2010). The focus of the Task Force VI Sedimentary Basins activities is to foster collaborations between academia, research institutes and industry in all domains relevant for the understanding of sedimentary basins, from regional to nano-scale, from the deep earth to near surface processes (e.g., Roure et al., 2010, 2013). In this activity, it is important to develop and validate novel concepts of sedimentary basin evolution and topography building by incorporating geological/geophysical datasets and methodologies applied to worldwide natural laboratories (Cloetingh et al., 2011; Cloetingh and Willett, 2013; Matenco and Andriessen, 2013). The Task Force aims to understand and predict the processes that control the formation and evolution of the coupled orogens and sedimentary basins system through integration of field studies, analytical techniques and numerical/analogue modelling. At the same time, the Task Force aims to promote research in the domain of sedimentary basins evolution and quantitative tectonics for the study of mountain building and the subsequent extensional collapse, and their quantitative implications for vertical motions on different temporal and spatial scales (Gibson et al., 2015; Matenco et al., 2016; Roure, 2008; Seranne et al., 2015). The implications of tectonics on basin fluids (fluid-flow and rock-fluid interactions) are important to understand and predict geo-resources (e.g., Nader, 2016). Important is to initiate innovative research lines in linking the evolution of sedimentary systems by integrating cross-disciplinary expertise with a focus on integrated sedimentary basins and orogenic evolution. The key is to strengthen the synergy between academic research and applied industry in large (inter)national interdisciplinary research networks able to tackle complex problems at integrated system level.

MY Cam: can homogeneous evolution produce gravitational-wave progenitors?

NASA Astrophysics Data System (ADS)

Negueruela, Ignacio

2016-10-01

Besides opening the era of gravitational-wave astrophysics, GW150914 has revolutionized the field of massive stars. GW150914 proves the existence of stellar-mass black holes in a configuration that current models for stellar evolution can only reproduce in special conditions of homogeneous evolution and/or low metallicity.Only a handful of very-massive binaries that could lead to a binary black hole are known. We request UV spectroscopy of MY Cam (38Msun+32Msun), the best laboratory to test several predictions by current models, in order to derive stellar abundances and wind parameters that are inaccessible from the ground. Together with our previous photometric and spectroscopic exhaustive coverage, the STIS spectra will be key to characterize the pre-common envelope phase and test the homogeneous evolution hypothesis, critical ingredients of the different progenitor scenarios proposed to explain GW15091.

Organogenesis in deep time: A problem in genomics, development, and paleontology.

PubMed

Pieretti, Joyce; Gehrke, Andrew R; Schneider, Igor; Adachi, Noritaka; Nakamura, Tetsuya; Shubin, Neil H

2015-04-21

The fossil record is a unique repository of information on major morphological transitions. Increasingly, developmental, embryological, and functional genomic approaches have also conspired to reveal evolutionary trajectory of phenotypic shifts. Here, we use the vertebrate appendage to demonstrate how these disciplines can mutually reinforce each other to facilitate the generation and testing of hypotheses of morphological evolution. We discuss classical theories on the origins of paired fins, recent data on regulatory modulations of fish fins and tetrapod limbs, and case studies exploring the mechanisms of digit loss in tetrapods. We envision an era of research in which the deep history of morphological evolution can be revealed by integrating fossils of transitional forms with direct experimentation in the laboratory via genome manipulation, thereby shedding light on the relationship between genes, developmental processes, and the evolving phenotype.

The Role of Laboratory-Based Studies of the Physical and Biological Properties of Sea Ice in Supporting the Observation and Modeling of Ice Covered Seas

NASA Astrophysics Data System (ADS)

Light, B.; Krembs, C.

2003-12-01

Laboratory-based studies of the physical and biological properties of sea ice are an essential link between high latitude field observations and existing numerical models. Such studies promote improved understanding of climatic variability and its impact on sea ice and the structure of ice-dependent marine ecosystems. Controlled laboratory experiments can help identify feedback mechanisms between physical and biological processes and their response to climate fluctuations. Climatically sensitive processes occurring between sea ice and the atmosphere and sea ice and the ocean determine surface radiative energy fluxes and the transfer of nutrients and mass across these boundaries. High temporally and spatially resolved analyses of sea ice under controlled environmental conditions lend insight to the physics that drive these transfer processes. Techniques such as optical probing, thin section photography, and microscopy can be used to conduct experiments on natural sea ice core samples and laboratory-grown ice. Such experiments yield insight on small scale processes from the microscopic to the meter scale and can be powerful interdisciplinary tools for education and model parameterization development. Examples of laboratory investigations by the authors include observation of the response of sea ice microstructure to changes in temperature, assessment of the relationships between ice structure and the partitioning of solar radiation by first-year sea ice covers, observation of pore evolution and interfacial structure, and quantification of the production and impact of microbial metabolic products on the mechanical, optical, and textural characteristics of sea ice.

Trinity to Trinity 1945-2015

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moniz, Ernest; Carr, Alan; Bethe, Hans

The Trinity Test of July 16, 1945 was the first full-scale, real-world test of a nuclear weapon; with the new Trinity supercomputer Los Alamos National Laboratory's goal is to do this virtually, in 3D. Trinity was the culmination of a fantastic effort of groundbreaking science and engineering by hundreds of men and women at Los Alamos and other Manhattan Project sites. It took them less than two years to change the world. The Laboratory is marking the 70th anniversary of the Trinity Test because it not only ushered in the Nuclear Age, but with it the origin of today’s advancedmore » supercomputing. We live in the Age of Supercomputers due in large part to nuclear weapons science here at Los Alamos. National security science, and nuclear weapons science in particular, at Los Alamos National Laboratory have provided a key motivation for the evolution of large-scale scientific computing. Beginning with the Manhattan Project there has been a constant stream of increasingly significant, complex problems in nuclear weapons science whose timely solutions demand larger and faster computers. The relationship between national security science at Los Alamos and the evolution of computing is one of interdependence.« less

Trinity to Trinity 1945-2015

ScienceCinema

Moniz, Ernest; Carr, Alan; Bethe, Hans; Morrison, Phillip; Ramsay, Norman; Teller, Edward; Brixner, Berlyn; Archer, Bill; Agnew, Harold; Morrison, John

2018-01-16

The Trinity Test of July 16, 1945 was the first full-scale, real-world test of a nuclear weapon; with the new Trinity supercomputer Los Alamos National Laboratory's goal is to do this virtually, in 3D. Trinity was the culmination of a fantastic effort of groundbreaking science and engineering by hundreds of men and women at Los Alamos and other Manhattan Project sites. It took them less than two years to change the world. The Laboratory is marking the 70th anniversary of the Trinity Test because it not only ushered in the Nuclear Age, but with it the origin of today’s advanced supercomputing. We live in the Age of Supercomputers due in large part to nuclear weapons science here at Los Alamos. National security science, and nuclear weapons science in particular, at Los Alamos National Laboratory have provided a key motivation for the evolution of large-scale scientific computing. Beginning with the Manhattan Project there has been a constant stream of increasingly significant, complex problems in nuclear weapons science whose timely solutions demand larger and faster computers. The relationship between national security science at Los Alamos and the evolution of computing is one of interdependence.

New NASA Mission to Reveal Moon Internal Structure and Evolution Artist Concept

NASA Image and Video Library

2007-12-11

The Gravity Recovery and Interior Laboratory, or GRAIL, mission will fly twin spacecraft in tandem orbits around the moon to measure its gravity field in unprecedented detail. GRAIL is a part of NASA Discovery Program.

The Moon: Keystone to Understanding Planetary Geological Processes and History

NASA Technical Reports Server (NTRS)

2002-01-01

Extensive and intensive exploration of the Earth's Moon by astronauts and an international array of automated spacecraft has provided an unequaled data set that has provided deep insight into geology, geochemistry, mineralogy, petrology, chronology, geophysics and internal structure. This level of insight is unequaled except for Earth. Analysis of these data sets over the last 35 years has proven fundamental to understanding planetary surface processes and evolution, and is essential to linking surface processes with internal and thermal evolution. Much of the understanding that we presently have of other terrestrial planets and outer planet satellites derives from the foundation of these data. On the basis of these data, the Moon is a laboratory for understanding of planetary processes and a keystone for providing evolutionary perspective. Important comparative planetology issues being addressed by lunar studies include impact cratering, magmatic activity and tectonism. Future planetary exploration plans should keep in mind the importance of further lunar exploration in continuing to build solid underpinnings in this keystone to planetary evolution. Examples of these insights and applications to other planets are cited.

A clinician's personal view of assisted reproductive technology over 35 years.

PubMed

Yovich, John L

2011-12-01

This invited presentation is intended to cover clinical developments in the evolution of assisted reproductive technology (ART), a process which was attempted during the 1940's and 50's and culminated in the first fruition in 1978. The first in vitro fertilisation (IVF) child ensued following the partnership by a scientist with a focussed ambition (Nobel laureate Robert Edwards) joining with the gynaecologist who introduced laparoscopy to Britain in the late 60's (Patrick Steptoe). My journey commenced in 1976 as a clinician who became immersed in the embryological and endocrinological science, whence most progress in ART emanates, and continued into a medical directorship position from which this personal view is documented. Several clinical advances have been important developments in the understanding and management of sub-fertile patients. However evolution of the various laboratory sciences has been the major key essential to meeting both the immediate as well as the long-term needs for human reproduction. The future requires a much better understanding and control over gametogenesis and a laboratory process which much more closely duplicates intrinsic reproductive physiology, avoiding gamete and embryo exposure to the atmosphere.This invited presentation is intended to cover clinical developments in the evolution of assisted reproductive technology (ART), a process which was attempted during the 1940's and 50's and culminated in the first fruition in 1978. The first in vitro fertilisation (IVF) child ensued following the partnership by a scientist with a focussed ambition (Nobel laureate Robert Edwards) joining with the gynaecologist who introduced laparoscopy to Britain in the late 60's (Patrick Steptoe). My journey commenced in 1976 as a clinician who became immersed in the embryological and endocrinological science, whence most progress in ART emanates, and continued into a medical directorship position from which this personal view is documented. Several clinical advances have been important developments in the understanding and management of sub-fertile patients. However evolution of the various laboratory sciences has been the major key essential to meeting both the immediate as well as the long-term needs for human reproduction. The future requires a much better understanding and control over gametogenesis and a laboratory process which much more closely duplicates intrinsic reproductive physiology, avoiding gamete and embryo exposure to the atmosphere.

Spectroscopic diagnostics of organic chemistry in the protostellar environment

NASA Technical Reports Server (NTRS)

Charnley, S. B.; Ehrenfreund, P.; Kuan, Y. J.

2001-01-01

A combination of astronomical observations, laboratory studies, and theoretical modelling is necessary to determine the organic chemistry of dense molecular clouds. We present spectroscopic evidence for the composition and evolution of organic molecules in protostellar environments. The principal reaction pathways to complex molecule formation by catalysis on dust grains and by reactions in the interstellar gas are described. Protostellar cores, where warming of dust has induced evaporation of icy grain mantles, are excellent sites in which to study the interaction between gas phase and grain-surface chemistries. We investigate the link between organics that are observed as direct products of grain surface reactions and those which are formed by secondary gas phase reactions of evaporated surface products. Theory predicts observable correlations between specific interstellar molecules, and also which new organics are viable for detection. We discuss recent infrared observations obtained with the Infrared Space Observatory, laboratory studies of organic molecules, theories of molecule formation, and summarise recent radioastronomical searches for various complex molecules such as ethers, azaheterocyclic compounds, and amino acids.

Cosmological parameter extraction and biases from type Ia supernova magnitude evolution

NASA Astrophysics Data System (ADS)

Linden, S.; Virey, J.-M.; Tilquin, A.

2009-11-01

We study different one-parametric models of type Ia supernova magnitude evolution on cosmic time scales. Constraints on cosmological and supernova evolution parameters are obtained by combined fits on the actual data coming from supernovae, the cosmic microwave background, and baryonic acoustic oscillations. We find that the best-fit values imply supernova magnitude evolution such that high-redshift supernovae appear some percent brighter than would be expected in a standard cosmos with a dark energy component. However, the errors on the evolution parameters are of the same order, and data are consistent with nonevolving magnitudes at the 1σ level, except for special cases. We simulate a future data scenario where SN magnitude evolution is allowed for, and neglect the possibility of such an evolution in the fit. We find the fiducial models for which the wrong model assumption of nonevolving SN magnitude is not detectable, and for which biases on the fitted cosmological parameters are introduced at the same time. Of the cosmological parameters, the overall mass density ΩM has the strongest chances to be biased due to the wrong model assumption. Whereas early-epoch models with a magnitude offset Δ m˜ z2 show up to be not too dangerous when neglected in the fitting procedure, late epoch models with Δ m˜√{z} have high chances of undetectably biasing the fit results. Centre de Physique Théorique is UMR 6207 - “Unité Mixte de Recherche” of CNRS and of the Universities “de Provence”, “de la Mediterranée”, and “du Sud Toulon-Var” - Laboratory affiliated with FRUMAM (FR2291).

Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus.

PubMed

Schaefke, Bernhard; Wang, Tzi-Yuan; Wang, Chuen-Yi; Li, Wen-Hsiung

2015-07-27

Gene expression evolution occurs through changes in cis- or trans-regulatory elements or both. Interactions between transcription factors (TFs) and their binding sites (TFBSs) constitute one of the most important points where these two regulatory components intersect. In this study, we investigated the evolution of TFBSs in the promoter regions of different Saccharomyces strains and species. We divided the promoter of a gene into the proximal region and the distal region, which are defined, respectively, as the 200-bp region upstream of the transcription starting site and as the 200-bp region upstream of the proximal region. We found that the predicted TFBSs in the proximal promoter regions tend to be evolutionarily more conserved than those in the distal promoter regions. Additionally, Saccharomyces cerevisiae strains used in the fermentation of alcoholic drinks have experienced more TFBS losses than gains compared with strains from other environments (wild strains, laboratory strains, and clinical strains). We also showed that differences in TFBSs correlate with the cis component of gene expression evolution between species (comparing S. cerevisiae and its sister species Saccharomyces paradoxus) and within species (comparing two closely related S. cerevisiae strains). © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Virus Satellites Drive Viral Evolution and Ecology

PubMed Central

Frígols, Belén; Quiles-Puchalt, Nuria; Mir-Sanchis, Ignacio; Donderis, Jorge; Elena, Santiago F.; Buckling, Angus; Novick, Richard P.; Marina, Alberto; Penadés, José R.

2015-01-01

Virus satellites are widespread subcellular entities, present both in eukaryotic and in prokaryotic cells. Their modus vivendi involves parasitism of the life cycle of their inducing helper viruses, which assures their transmission to a new host. However, the evolutionary and ecological implications of satellites on helper viruses remain unclear. Here, using staphylococcal pathogenicity islands (SaPIs) as a model of virus satellites, we experimentally show that helper viruses rapidly evolve resistance to their virus satellites, preventing SaPI proliferation, and SaPIs in turn can readily evolve to overcome phage resistance. Genomic analyses of both these experimentally evolved strains as well as naturally occurring bacteriophages suggest that the SaPIs drive the coexistence of multiple alleles of the phage-coded SaPI inducing genes, as well as sometimes selecting for the absence of the SaPI depressing genes. We report similar (accidental) evolution of resistance to SaPIs in laboratory phages used for Staphylococcus aureus typing and also obtain the same qualitative results in both experimental evolution and phylogenetic studies of Enterococcus faecalis phages and their satellites viruses. In summary, our results suggest that helper and satellite viruses undergo rapid coevolution, which is likely to play a key role in the evolution and ecology of the viruses as well as their prokaryotic hosts. PMID:26495848

New clinical opportunities for retinal vascular imaging: adaptive optics to OCT angiography

NASA Astrophysics Data System (ADS)

Rosen, Richard; Chui, Toco; Weitz, Rishard; Dubra, Alfredo; Carroll, Joseph; Garcia, Patricia; Pinhas, Alexander; Scripsema, Nicole; Mo, Shelley; Agemy, Steven; Krawitz, Brian

2018-03-01

As techniques of retinal imaging have evolved, anatomic features that were only assessable in the laboratory have become available in the clinic for patient care. The retinal capillaries were initially described on microscope sections in the pathology laboratory. As optical methods have advanced these features have become part of the routine clinical landscape inspected daily by physicians. This paper briefly traces the evolution of these techniques and shows how they fit into the modern diagnostic armamentarium of ophthalmic retinal care.

Open clusters as laboratories: The angular momentum evolution of young stars

NASA Technical Reports Server (NTRS)

Stauffer, John R.

1994-01-01

This is the annual status report for the third year of our LTSA grant 'Open Clusters as Laboratories.' Because we have now had a few years to work on the project, we have started to produce and publish a large number of papers. We have been extremely successful in obtaining ROSAT observations of open clusters. With the demise of the PSPC on ROSAT, our main data source has come to an end and we will be able to concentrate on analyzing those data.

Coupled hydrological and geochemical process evolution at the Landscape Evolution Observatory

NASA Astrophysics Data System (ADS)

Troch, P. A. A.

2015-12-01

Predictions of hydrologic and biogeochemical responses to natural and anthropogenic forcing at the landscape scale are highly uncertain due to the effects of heterogeneity on the scaling of reaction, flow and transport phenomena. The physical, chemical and biological structures and processes controlling reaction, flow and transport in natural landscapes interact at multiple space and time scales and are difficult to quantify. The current paradigm of hydrological and geochemical theory is that process descriptions derived from observations at small scales in controlled systems can be applied to predict system response at much larger scales, as long as some 'equivalent' or 'effective' values of the scale-dependent parameters can be identified. Furthermore, natural systems evolve in time in a way that is hard to observe in short-run laboratory experiments or in natural landscapes with unknown initial conditions and time-variant forcing. The spatial structure of flow pathways along hillslopes determines the rate, extent and distribution of geochemical reactions (and biological colonization) that drive weathering, the transport and precipitation of solutes and sediments, and the further evolution of soil structure. The resulting evolution of structures and processes, in turn, produces spatiotemporal variability of hydrological states and flow pathways. There is thus a need for experimental research to improve our understanding of hydrology-biogeochemistry interactions and feedbacks at appropriate spatial scales larger than laboratory soil column experiments. Such research is complicated in real-world settings because of poorly constrained impacts of initial conditions, climate variability, ecosystems dynamics, and geomorphic evolution. The Landscape Evolution Observatory (LEO) at Biosphere 2 offers a unique research facility that allows real-time observations of incipient hydrologic and biogeochemical response under well-constrained initial conditions and climate forcing. The LEO allows to close the water, carbon and energy budgets at hillslope scales, thereby enabling elucidation of the tight coupling between the time water spends along subsurface flow paths and geochemical weathering reactions, including the feedbacks between flow and pedogenesis.

Controlled Quantum Packets

NASA Technical Reports Server (NTRS)

DeMartino, Salvatore; DeSiena, Silvio

1996-01-01

We look at time evolution of a physical system from the point of view of dynamical control theory. Normally we solve motion equation with a given external potential and we obtain time evolution. Standard examples are the trajectories in classical mechanics or the wave functions in Quantum Mechanics. In the control theory, we have the configurational variables of a physical system, we choose a velocity field and with a suited strategy we force the physical system to have a well defined evolution. The evolution of the system is the 'premium' that the controller receives if he has adopted the right strategy. The strategy is given by well suited laboratory devices. The control mechanisms are in many cases non linear; it is necessary, namely, a feedback mechanism to retain in time the selected evolution. Our aim is to introduce a scheme to obtain Quantum wave packets by control theory. The program is to choose the characteristics of a packet, that is, the equation of evolution for its centre and a controlled dispersion, and to give a building scheme from some initial state (for example a solution of stationary Schroedinger equation). It seems natural in this view to use stochastic approach to Quantum Mechanics, that is, Stochastic Mechanics [S.M.]. It is a quantization scheme different from ordinary ones only formally. This approach introduces in quantum theory the whole mathematical apparatus of stochastic control theory. Stochastic Mechanics, in our view, is more intuitive when we want to study all the classical-like problems. We apply our scheme to build two classes of quantum packets both derived generalizing some properties of coherent states.

Trends in cardiac catheterization laboratories in the United States.

PubMed

Sheldon, W C

2001-05-01

The Society for Cardiac Angiography and Interventions has periodically published a Directory of Cardiac Catheterization Laboratories in the United States. All known catheterization laboratories are surveyed and certain operational characteristics are queried. These surveys, in 1983, 1987, 1993, 1995 and 1998, have demonstrated a 2.5 fold increase in cardiac catheterization laboratories since 1983, corresponding increases in numbers of physicians that perform procedures, and in the numbers of procedures performed, reflecting advances in cardiovascular medicine and technology. These surveys have also documented the evolution of interventional techniques, and a shift away from film based imaging, to digitally based methods. These data provide a substrate for consideration of national cardiovascular objectives and planning of future resource allocation by cardiovascular physicians and their colleagues. Copyright 2001 Wiley-Liss, Inc.

LCRD Update and Path to Optical Relay Operations

NASA Technical Reports Server (NTRS)

Israel, David

2017-01-01

Speaker and Presenter at the Lincoln Laboratory Communications Workshop on May 23, 2017 at the Massachusetts Institute of Technology Lincoln Laboratory in Lexington, MA. This presentation discusses a concept for an evolution of NASAs optical communications near-Earth relay architecture. NASA's Laser Communications Relay Demonstration (LCRD) is a joint project between NASAs Goddard Space Flight Center (GSFC), the Jet Propulsion Laboratory California Institute of Technology (JPL), and the Massachusetts Institute of Technology Lincoln Laboratory (MIT LL). LCRD will provide a minimum of two years of high data rate optical communications service experiments in geosynchronous orbit (GEO) following launch in 2019. This presentation will provide an update of the LCRD mission status and planned capabilities and experiments, followed by a discussion of the path from LCRD to operational network capabilities.

Protein and genome evolution in Mammalian cells for biotechnology applications.

PubMed

Majors, Brian S; Chiang, Gisela G; Betenbaugh, Michael J

2009-06-01

Mutation and selection are the essential steps of evolution. Researchers have long used in vitro mutagenesis, expression, and selection techniques in laboratory bacteria and yeast cultures to evolve proteins with new properties, termed directed evolution. Unfortunately, the nature of mammalian cells makes applying these mutagenesis and whole-organism evolution techniques to mammalian protein expression systems laborious and time consuming. Mammalian evolution systems would be useful to test unique mammalian cell proteins and protein characteristics, such as complex glycosylation. Protein evolution in mammalian cells would allow for generation of novel diagnostic tools and designer polypeptides that can only be tested in a mammalian expression system. Recent advances have shown that mammalian cells of the immune system can be utilized to evolve transgenes during their natural mutagenesis processes, thus creating proteins with unique properties, such as fluorescence. On a more global level, researchers have shown that mutation systems that affect the entire genome of a mammalian cell can give rise to cells with unique phenotypes suitable for commercial processes. This review examines the advances in mammalian cell and protein evolution and the application of this work toward advances in commercial mammalian cell biotechnology.

Scientific Value of a Saturn Atmospheric Probe Mission

NASA Technical Reports Server (NTRS)

Simon-Miller, A. A.; Lunine, J. I.; Atreya, S. K.; Spilker, T. R.; Coustenis, A.; Atkinson, D. H.

2012-01-01

Atmospheric entry probe mISSions to the giant planets can uniquely discriminate between competing theories of solar system formation and the origin and evolution of the giant planets and their atmospheres. This provides for important comparative studies of the gas and ice giants, and to provide a laboratory for studying the atmospheric chemistries, dynamics, and interiors of all the planets including Earth. The giant planets also represent a valuable link to extrasolar planetary systems. As outlined in the recent Planetary Decadal Survey, a Saturn Probe mission - with a shallow probe - ranks as a high priority for a New Frontiers class mission [1].

Study of Perturbations on High Mach Number Blast Waves in Various Gasses

NASA Astrophysics Data System (ADS)

Edens, A.; Adams, R.; Rambo, P.; Shores, J.; Smith, I.; Atherton, B.; Ditmire, T.

2006-10-01

We have performed a series of experiments examining the properties of high Mach number blast waves. Experiments were conducted on the Z-Beamlet^1 laser at Sandia National Laboratories. We created blast waves in the laboratory by using 10 J- 1000 J laser pulses to illuminate millimeter scale solid targets immersed in gas. Our experiments studied the validity of theories forwarded by Vishniac and Ryu^2-4 to explain the dynamics of perturbations on astrophysical blast waves. These experiments consisted of an examination of the evolution of perturbations of known primary mode number induced on the surface of blast waves by means of regularly spaced wire arrays. The temporal evolution of the amplitude of the induced perturbations relative to the mean radius of the blast wave was fit to a power law in time. Measurements were taken for a number of different mode numbers and background gasses and the results show qualitative agreement with previously published theories for the hydrodynamics of thin shell blast wave. The results for perturbations on nitrogen gas have been recently published^5. .^1 P. K. Rambo, I. C. Smith, J. L. Porter, et al., Applied Optics 44, 2421 (2005). ^2 D. Ryu and E. T. Vishniac, Astrophysical Journal 313, 820 (1987). ^3 D. Ryu and E. T. Vishniac, Astrophysical Journal 368, 411 (1991). ^4 E. T. Vishniac, Astrophysical Journal 274, 152 (1983). ^5 A. D. Edens, T. Ditmire, J. F. Hansen, et al., Physical Review Letters 95 (2005).

Animal Rights Activism Threatens Dissection.

ERIC Educational Resources Information Center

Holden, Constance

1990-01-01

Discussed is the movement against the use of dissections in science laboratories. Examples of protests across the United States are included. Compared is the plight of using animals in a biology classroom and the demise of the teaching of evolution in some areas. (KR)

Inbreeding depression in two seed-feeding beetles, Callosobruchus maculatus and Stator limbatus (Coleoptera: Chrysomelidae).

PubMed

Fox, C W; Scheibly, K L; Smith, B P; Wallin, W G

2007-02-01

Inbreeding depression is well documented in insects but the degree to which inbreeding depression varies among populations within species, and among traits within populations, is poorly studied in insects other than Drosophila. Inbreeding depression was examined in two long-term laboratory colonies of the seed beetle, Callosobruchus maculatus (Fabricius), which are used frequently as models for experiments in ecology, evolution and behaviour. Inbreeding depression in these laboratory colonies are compared with one recently field-collected population of a different seed beetle, Stator limbatus Horn. Inbreeding reduced embryogenesis, egg hatch and larval survival in both species, such that eggs produced by sib matings were >17% less likely to produce an adult offspring. Inbred larvae also took 4-6% longer to develop to emergence in both species. Inbreeding depression varied among the measured traits but did not differ between the two populations of C. maculatus for any trait, despite the large geographic distance between source populations (western Africa vs. southern India). Inbreeding depression was similar in magnitude between C. maculatus and S. limbatus. This study demonstrates that these laboratory populations of C. maculatus harbour substantial genetic loads, similar to the genetic load of populations of S. limbatus recently collected from the field.

New paleomagnetic constraints on the lunar magnetic field evolution

NASA Astrophysics Data System (ADS)

Lepaulard, C.; Gattacceca, J.; Weiss, B. P.

2017-12-01

In the 1970s, the first paleomagnetic analyses of lunar samples from the Apollo missions allowed a glimpse of the global evolution of the Moon's magnetic field over time, with evidence for a past dynamo activity [Fuller et Cisowski, 1987]. During the last a decade, a new set of paleomagnetic studies has provided a more refined view of the evolution of the lunar dynamo activity (chronology, intensity) [Weiss et Tikoo, 2014]. The aim of this study is to further refine the knowledge of the lunar dynamo by providing new paleomagnetic data. Based on measurements of the natural remanent magnetization of the main masses of 135 Apollo samples (mass between 50 g and 5 kg) with a portable magnetometer, we have selected nine samples for laboratory analyzes. The selected Apollo samples are: 10018, 15505, 61195 (regolith breccia); 61015 (dimict breccia); 14169 (crystalline matrix breccia); 65055 (basaltic impact melt); 12005, 12021 and 15529 (basalts). Paleointensity of the lunar magnetic fields were obtained by demagnetization by alternative field and normalization with laboratory magnetizations; as well as thermal demagnetization under controlled oxygen fugacity (Thellier-Thellier method) for selected samples. Preliminary results indicate that only three samples (10018, 15505, and 15529) possess a stable high coercivity / high temperature component of magnetization. We estimated the following paleointensities: 1.5 µT for 15505, 13 µT for 15529 (both with alternating field-based methods), and 1 µT for 10018 (thermal demagnetization with the Thellier-Thellier method). The other samples provide only an upper limit for the lunar surface field. These data will be discussed in view of the age of the samples (ages from the literature, and additional dating in progress). References :Fuller, M., and S.M. Cisowski, 1987. Lunar paleomagnetism. Geomagnetism 2, 307-455. Weiss, B.P., and S.M. Tikoo, 2014. The lunar dynamo. Science, 346, doi: 10.1126/science.1246753.

Evolution of space food in Nostoc sp. HK-01

NASA Astrophysics Data System (ADS)

Tomita-Yokotani, Kaori; Yamashita, Masamichi; Hashimoto, Hirofumi; Sato, Seigo; Kimura, Yasuko; Katoh, Hiroshi; Arai, Mayumi

2012-07-01

Habitation in outer space is one of our challenges. We have been studying future space agriculture to provide food and oxygen for the habitation area in the space environment, on Mars. A cyanobacteria, Nostoc sp. HK-01, has high several outer space environmental tolerance. We have already confirmed that Nostoc sp.HK-01 had an ability to grow for over several years on the Martian regolith simulant in a laboratory experiment. Nostoc sp HK-01 would have high contribution to change the atmosphere in Mars as a photosynthetic creature. In outer environment, all of materials have to circulate for all of creature living in artificial eco-systems on Mars. This material has several functions as the utilization in space agriculture. Here, we are proposing using them as a food after its growing on Mars. We are trying to determine the best conditions and evolution for space food using Nostoc sp.HK-01 and studying the proposal of utilization of cyanobacteria, Nostoc sp HK-01, for the variation of meal as space agriculture.

Neocentromeres: role in human disease, evolution, and centromere study.

PubMed

Amor, David J; Choo, K H Andy

2002-10-01

The centromere is essential for the proper segregation and inheritance of genetic information. Neocentromeres are ectopic centromeres that originate occasionally from noncentromeric regions of chromosomes. Despite the complete absence of normal centromeric alpha-satellite DNA, human neocentromeres are able to form a primary constriction and assemble a functional kinetochore. Since the discovery and characterization of the first case of a human neocentromere in our laboratory a decade ago, 60 examples of constitutional human neocentromeres distributed widely across the genome have been described. Typically, these are located on marker chromosomes that have been detected in children with developmental delay or congenital abnormalities. Neocentromeres have also been detected in at least two types of human cancer and have been experimentally induced in Drosophila. Current evidence from human and fly studies indicates that neocentromere activity is acquired epigenetically rather than by any alteration to the DNA sequence. Since human neocentromere formation is generally detrimental to the individual, its biological value must lie beyond the individual level, such as in karyotype evolution and speciation.

Shape evolution of 72,74Kr with temperature in covariant density functional theory

NASA Astrophysics Data System (ADS)

Zhang, Wei; Niu, Yi-Fei

2017-09-01

The rich phenomena of deformations in neutron-deficient krypton isotopes, such as shape evolution with neutron number and shape coexistence, have attracted the interest of nuclear physicists for decades. It is interesting to study such shape phenomena using a novel way, e.g. by thermally exciting the nucleus. In this work, we develop the finite temperature covariant density functional theory for axially deformed nuclei with the treatment of pairing correlations by the BCS approach, and apply this approach for the study of shape evolution in 72,74Kr with increasing temperature. For 72Kr, with temperature increasing, the nucleus firstly experiences a relatively quick weakening in oblate deformation at temperature T ˜0.9 MeV, and then changes from oblate to spherical at T ˜2.1 MeV. For 74Kr, its global minimum is at quadrupole deformation β 2 ˜ -0.14 and abruptly changes to spherical at T˜ 1.7 MeV. The proton pairing transition occurs at critical temperature 0.6 MeV following the rule T c=0.6Δ p(0), where Δ p(0) is the proton pairing gap at zero temperature. The signatures of the above pairing transition and shape changes can be found in the specific heat curve. The single-particle level evolutions with temperature are presented. Supported by National Natural Science Foundation of China (11105042, 11305161, 11505157), Open Fund of Key Laboratory of Time and Frequency Primary Standards, CAS, and Support from Henan Administration of Foreign Experts Affairs

The evolutionary ecology of the Lygaeidae

PubMed Central

Burdfield-Steel, Emily R; Shuker, David M

2014-01-01

The Lygaeidae (sensu lato) are a highly successful family of true bugs found worldwide, yet many aspects of their ecology and evolution remain obscure or unknown. While a few species have attracted considerable attention as model species for the study of insect physiology, it is only relatively recently that biologists have begun to explore aspects of their behavior, life history evolution, and patterns of intra- and interspecific ecological interactions across more species. As a result though, a range of new phenotypes and opportunities for addressing current questions in evolutionary ecology has been uncovered. For example, researchers have revealed hitherto unexpectedly rich patterns of bacterial symbiosis, begun to explore the evolutionary function of the family's complex genitalia, and also found evidence of parthenogenesis. Here we review our current understanding of the biology and ecology of the group as a whole, focusing on several of the best-studied characteristics of the group, including aposematism (i.e., the evolution of warning coloration), chemical communication, sexual selection (especially, postcopulatory sexual selection), sexual conflict, and patterns of host-endosymbiont coevolution. Importantly, many of these aspects of lygaeid biology are likely to interact, offering new avenues for research, for instance into how the evolution of aposematism influences sexual selection. With the growing availability of genomic tools for previously “non-model” organisms, combined with the relative ease of keeping many of the polyphagous species in the laboratory, we argue that these bugs offer many opportunities for behavioral and evolutionary ecologists. PMID:25360267

Heterogeneity-enhanced gas phase formation in shallow aquifers during leakage of CO2-saturated water from geologic sequestration sites

NASA Astrophysics Data System (ADS)

Plampin, Michael R.; Lassen, Rune N.; Sakaki, Toshihiro; Porter, Mark L.; Pawar, Rajesh J.; Jensen, Karsten H.; Illangasekare, Tissa H.

2014-12-01

A primary concern for geologic carbon storage is the potential for leakage of stored carbon dioxide (CO2) into the shallow subsurface where it could degrade the quality of groundwater and surface water. In order to predict and mitigate the potentially negative impacts of CO2 leakage, it is important to understand the physical processes that CO2 will undergo as it moves through naturally heterogeneous porous media formations. Previous studies have shown that heterogeneity can enhance the evolution of gas phase CO2 in some cases, but the conditions under which this occurs have not yet been quantitatively defined, nor tested through laboratory experiments. This study quantitatively investigates the effects of geologic heterogeneity on the process of gas phase CO2 evolution in shallow aquifers through an extensive set of experiments conducted in a column that was packed with layers of various test sands. Soil moisture sensors were utilized to observe the formation of gas phase near the porous media interfaces. Results indicate that the conditions under which heterogeneity controls gas phase evolution can be successfully predicted through analysis of simple parameters, including the dissolved CO2 concentration in the flowing water, the distance between the heterogeneity and the leakage location, and some fundamental properties of the porous media. Results also show that interfaces where a less permeable material overlies a more permeable material affect gas phase evolution more significantly than interfaces with the opposite layering.

How much can history constrain adaptive evolution? A real-time evolutionary approach of inversion polymorphisms in Drosophila subobscura.

PubMed

Fragata, I; Lopes-Cunha, M; Bárbaro, M; Kellen, B; Lima, M; Santos, M A; Faria, G S; Santos, M; Matos, M; Simões, P

2014-12-01

Chromosomal inversions are present in a wide range of animals and plants, having an important role in adaptation and speciation. Although empirical evidence of their adaptive value is abundant, the role of different processes underlying evolution of chromosomal polymorphisms is not fully understood. History and selection are likely to shape inversion polymorphism variation to an extent yet largely unknown. Here, we perform a real-time evolution study addressing the role of historical constraints and selection in the evolution of these polymorphisms. We founded laboratory populations of Drosophila subobscura derived from three locations along the European cline and followed the evolutionary dynamics of inversion polymorphisms throughout the first 40 generations. At the beginning, populations were highly differentiated and remained so throughout generations. We report evidence of positive selection for some inversions, variable between foundations. Signs of negative selection were more frequent, in particular for most cold-climate standard inversions across the three foundations. We found that previously observed convergence at the phenotypic level in these populations was not associated with convergence in inversion frequencies. In conclusion, our study shows that selection has shaped the evolutionary dynamics of inversion frequencies, but doing so within the constraints imposed by previous history. Both history and selection are therefore fundamental to predict the evolutionary potential of different populations to respond to global environmental changes. © 2014 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

Quality in laboratory medicine: 50years on.

PubMed

Plebani, Mario

2017-02-01

The last 50years have seen substantial changes in the landscape of laboratory medicine: its role in modern medicine is in evolution and the quality of laboratory services is changing. The need to control and improve quality in clinical laboratories has grown hand in hand with the growth in technological developments leading to an impressive reduction of analytical errors over time. An essential cause of this impressive improvement has been the introduction and monitoring of quality indicators (QIs) such as the analytical performance specifications (in particular bias and imprecision) based on well-established goals. The evolving landscape of quality and errors in clinical laboratories moved first from analytical errors to all errors performed within the laboratory walls, subsequently to errors in laboratory medicine (including errors in test requesting and result interpretation), and finally, to a focus on errors more frequently associated with adverse events (laboratory-associated errors). After decades in which clinical laboratories have focused on monitoring and improving internal indicators of analytical quality, efficiency and productivity, it is time to shift toward indicators of total quality, clinical effectiveness and patient outcomes. Copyright © 2016 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

Toolbox for Research and Exploration (TREX): Investigations of Fine-Grained Materials on Small Bodies

NASA Technical Reports Server (NTRS)

Domingue, D. L.; Allain, J.-P.; Banks, M.; Christoffersen, R.; Cintala, M.; Clark, R.; Cloutis, E.; Graps, A.; Hendrix, A. R.; Hsieh, H.;

Directed Evolution as a Powerful Synthetic Biology Tool

PubMed Central

Cobb, Ryan E.; Sun, Ning; Zhao, Huimin

2012-01-01

At the heart of synthetic biology lies the goal of rationally engineering a complete biological system to achieve a specific objective, such as bioremediation and synthesis of a valuable drug, chemical, or biofuel molecule. However, the inherent complexity of natural biological systems has heretofore precluded generalized application of this approach. Directed evolution, a process which mimics Darwinian selection on a laboratory scale, has allowed significant strides to be made in the field of synthetic biology by allowing rapid identification of desired properties from large libraries of variants. Improvement in biocatalyst activity and stability, engineering of biosynthetic pathways, tuning of functional regulatory systems and logic circuits, and development of desired complex phenotypes in industrial host organisms have all been achieved by way of directed evolution. Here, we review recent contributions of directed evolution to synthetic biology at the protein, pathway, network, and whole cell levels. PMID:22465795

Culture and biology in the origins of linguistic structure.

PubMed

Kirby, Simon

2017-02-01

Language is systematically structured at all levels of description, arguably setting it apart from all other instances of communication in nature. In this article, I survey work over the last 20 years that emphasises the contributions of individual learning, cultural transmission, and biological evolution to explaining the structural design features of language. These 3 complex adaptive systems exist in a network of interactions: individual learning biases shape the dynamics of cultural evolution; universal features of linguistic structure arise from this cultural process and form the ultimate linguistic phenotype; the nature of this phenotype affects the fitness landscape for the biological evolution of the language faculty; and in turn this determines individuals' learning bias. Using a combination of computational simulation, laboratory experiments, and comparison with real-world cases of language emergence, I show that linguistic structure emerges as a natural outcome of cultural evolution once certain minimal biological requirements are in place.

Unstable Hadrons in Hot Hadron Gas in Laboratory and in the Early Universe

NASA Astrophysics Data System (ADS)

Kuznetsova, Inga; Rafelski, Johann

2011-04-01

We study kinetic master equations for reactions involving the formation and the natural decay of unstable particles in a thermal expanding hadronic gas in the laboratory and in the early Universe. We consider here for the first time the role of the decay channel of one (hadron resonance) into two daughter particles, and also by token of detailed balance the inverse process, fusion of two (thermal) particles into one. We obtain the thermal invariant reaction rate using as an input the free space (vacuum) decay time and show the medium quantum effects on π+π<->ρ reaction relaxation time. As another laboratory example we describe the K+K<->φ process in thermal expanding hadronic gas in heavy ions collisions. A particularly interesting application of our formalism is the 0̂<->γ+γ process in the early Universe. We also explore the fate of charged pions and the muon freeze-out in the Universe. Another interesting field of application of our formalism is the study of short lived hadronic resonances, which are in general not able to reach yield equilibrium. We study the evolution of hadron resonances in small drops of QGP and use the insight gained to generalize the dynamics to QED effects as well.

Contextualising primate origins--an ecomorphological framework.

PubMed

Soligo, Christophe; Smaers, Jeroen B

2016-04-01

Ecomorphology - the characterisation of the adaptive relationship between an organism's morphology and its ecological role - has long been central to theories of the origin and early evolution of the primate order. This is exemplified by two of the most influential theories of primate origins: Matt Cartmill's Visual Predation Hypothesis, and Bob Sussman's Angiosperm Co-Evolution Hypothesis. However, the study of primate origins is constrained by the absence of data directly documenting the events under investigation, and has to rely instead on a fragmentary fossil record and the methodological assumptions inherent in phylogenetic comparative analyses of extant species. These constraints introduce particular challenges for inferring the ecomorphology of primate origins, as morphology and environmental context must first be inferred before the relationship between the two can be considered. Fossils can be integrated in comparative analyses and observations of extant model species and laboratory experiments of form-function relationships are critical for the functional interpretation of the morphology of extinct species. Recent developments have led to important advancements, including phylogenetic comparative methods based on more realistic models of evolution, and improved methods for the inference of clade divergence times, as well as an improved fossil record. This contribution will review current perspectives on the origin and early evolution of primates, paying particular attention to their phylogenetic (including cladistic relationships and character evolution) and environmental (including chronology, geography, and physical environments) contextualisation, before attempting an up-to-date ecomorphological synthesis of primate origins. © 2016 Anatomical Society.

A brief history of Sandia's National security missions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Drewien, Celeste A.; O'Canna, Myra Lynn; Stikar, John Anthony.

2014-09-01

To help members of the workforce understand what factors contribute to Sandia National Laboratories national security mission, the authors describe the evolution of Sandias core mission and its other mission components. The mission of Sandia first as a division of Los Alamos and later as Sandia Corporation underlies our core nuclear weapon mission of today. Sandias mission changed in 1963 and twice more in the 1970s. This report should help staff and management appreciate the need for mission evolution. A clear definition and communication of a consistent corporate mission statement is still needed.

The evolving trend in spacecraft health analysis

NASA Technical Reports Server (NTRS)

Kirkpatrick, Russell L.

1993-01-01

The Space Flight Operations Center inaugurated the concept of a central data repository for spacecraft data and the distribution of computing power to the end users for that data's analysis at the Jet Propulsion Laboratory. The Advanced Multimission Operations System is continuing the evolution of this concept as new technologies emerge. Constant improvements in data management tools, data visualization, and hardware lead to ever expanding ideas for improving the analysis of spacecraft health in an era of budget constrained mission operations systems. The foundation of this evolution, its history, and its current plans will be discussed.

Evolution of Photometric and Polarimetric Phase Curves of Fine-Grained Water Ice Particles due to Grain Sintering

NASA Astrophysics Data System (ADS)

Jost, B.; Cerubini, R.; Poch, O.; Pommerol, A.; Thomas, N.

2018-06-01

Laboratory photometric and polarimetric phase curves of micrometer-sized water ice particles to elucidate the effect of grain sintering on scattering properties relevant for the analysis of potential plume deposition sites on icy satellites.

Development of a Signal Data Converter for an Airport Visibility Measuring System

DOT National Transportation Integrated Search

1975-08-01

This report briefly describes the evolution of the FAA/NBS Runway Visual Range RVR transmissometer system into a breadboard Airport Visibility Measuring System (ARVIS) which has been laboratory tested and which will undergo field tests at the Nationa...

Stochastic and Deterministic Approaches to Gas-grain Modeling of Interstellar Sources

NASA Astrophysics Data System (ADS)

Vasyunin, Anton; Herbst, Eric; Caselli, Paola

During the last decade, our understanding of the chemistry on surfaces of interstellar grains has been significantly enchanced. Extensive laboratory studies have revealed complex structure and dynamics in interstellar ice analogues, thus making our knowledge much more detailed. In addition, the first qualitative investigations of new processes were made, such as non-thermal chemical desorption of species from dust grains into the gas. Not surprisingly, the rapid growth of knowledge about the physics and chemistry of interstellar ices led to the development of a new generation of astrochemical models. The models are typically characterized by more detailed treatments of the ice physics and chemistry than previously. The utilized numerical approaches vary greatly from microscopic models, in which every single molecule is traced, to ``mean field'' macroscopic models, which simulate the evolution of averaged characteristics of interstellar ices, such as overall bulk composition. While microscopic models based on a stochastic Monte Carlo approach are potentially able to simulate the evolution of interstellar ices with an account of most subtle effects found in a laboratory, their use is often impractical due to limited knowledge about star-forming regions and huge computational demands. On the other hand, deterministic macroscopic models that often utilize kinetic rate equations are computationally efficient but experience difficulties in incorporation of such potentially important effects as ice segregation or discreteness of surface chemical reactions. In my talk, I will review the state of the art in the development of gas-grain astrochemical models. I will discuss how to incorporate key features of ice chemistry and dynamics in the gas-grain astrochemical models, and how the incorporation of recent laboratory findings into gas-grain models helps to better match observations.

Outreach/education interface for Cryosphere models using the Virtual Ice Sheet Laboratory

NASA Astrophysics Data System (ADS)

Larour, E. Y.; Halkides, D. J.; Romero, V.; Cheng, D. L.; Perez, G.

2014-12-01

In the past decade, great strides have been made in the development of models capable of projecting the future evolution of glaciers and the polar ice sheets in a changing climate. These models are now capable of replicating some of the trends apparent in satellite observations. However, because this field is just now maturing, very few efforts have been dedicated to adapting these capabilities to education. Technologies that have been used in outreach efforts in Atmospheric and Oceanic sciences still have not been extended to Cryospheric Science. We present a cutting-edge, technologically driven virtual laboratory, geared towards outreach and k-12 education, dedicated to the polar ice sheets on Antarctica and Greenland, and their role as major contributors to sea level rise in coming decades. VISL (Virtual Ice Sheet Laboratory) relies on state-of-the art Web GL rendering of polar ice sheets, Android/iPhone and web portability using Javascript, as well as C++ simulations (back-end) based on the Ice Sheet System Model, the NASA model for simulating the evolution of polar ice sheets. Using VISL, educators and students can have an immersive experience into the world of polar ice sheets, while at the same exercising the capabilities of a state-of-the-art climate model, all of it embedded into an education experience that follows the new STEM standards for education.This work was performed at the California Institute of Technology's Jet Propulsion Laboratory under a contract with the National Aeronautics and Space Administration's Cryosphere Science Program.

Epistasis increases the rate of conditionally neutral substitution in an adapting population.

PubMed

Draghi, Jeremy A; Parsons, Todd L; Plotkin, Joshua B

2011-04-01

Kimura observed that the rate of neutral substitution should equal the neutral mutation rate. This classic result is central to our understanding of molecular evolution, and it continues to influence phylogenetics, genomics, and the interpretation of evolution experiments. By demonstrating that neutral mutations substitute at a rate independent of population size and selection at linked sites, Kimura provided an influential justification for the idea of a molecular clock and emphasized the importance of genetic drift in shaping molecular evolution. But when epistasis among sites is common, as numerous empirical studies suggest, do neutral mutations substitute according to Kimura's expectation? Here we study simulated, asexual populations of RNA molecules, and we observe that conditionally neutral mutations--i.e., mutations that do not alter the fitness of the individual in which they arise, but that may alter the fitness effects of subsequent mutations--substitute much more often than expected while a population is adapting. We quantify these effects using a simple population-genetic model that elucidates how the substitution rate at conditionally neutral sites depends on the population size, mutation rate, strength of selection, and prevalence of epistasis. We discuss the implications of these results for our understanding of the molecular clock, and for the interpretation of molecular variation in laboratory and natural populations.

Epistasis Increases the Rate of Conditionally Neutral Substitution in an Adapting Population

PubMed Central

Draghi, Jeremy A.; Parsons, Todd L.; Plotkin, Joshua B.

2011-01-01

Kimura observed that the rate of neutral substitution should equal the neutral mutation rate. This classic result is central to our understanding of molecular evolution, and it continues to influence phylogenetics, genomics, and the interpretation of evolution experiments. By demonstrating that neutral mutations substitute at a rate independent of population size and selection at linked sites, Kimura provided an influential justification for the idea of a molecular clock and emphasized the importance of genetic drift in shaping molecular evolution. But when epistasis among sites is common, as numerous empirical studies suggest, do neutral mutations substitute according to Kimura's expectation? Here we study simulated, asexual populations of RNA molecules, and we observe that conditionally neutral mutations—i.e., mutations that do not alter the fitness of the individual in which they arise, but that may alter the fitness effects of subsequent mutations—substitute much more often than expected while a population is adapting. We quantify these effects using a simple population-genetic model that elucidates how the substitution rate at conditionally neutral sites depends on the population size, mutation rate, strength of selection, and prevalence of epistasis. We discuss the implications of these results for our understanding of the molecular clock, and for the interpretation of molecular variation in laboratory and natural populations. PMID:21288876

A Model Study of the Thermal Evolution of Astrophysical Ices

NASA Technical Reports Server (NTRS)

Loeffler, M. J.; Teolis, B. D.; Baragiola, R. A.

2006-01-01

We address the question of the evolution of ices that have been exposed to radiation from stellar sources and cosmic rays. We studied in the laboratory the thermal evolution of a model ice sample: a mixture of water, hydrogen peroxide, dioxygen, and ozone produced by irradiating solid H2O2 with 50 keV H(+) at 17 K. The changes in composition and release of volatiles during warming to 200 K were monitored by infrared spectroscopy, mass spectrometry, and microbalance techniques. We find evidence for voids in the water component from the infrared bands due to dangling H bonds. The absorption from these bands increases during heating and can be observed at temperatures as high as approx. 155 K. More O2 is stored in the radiolyzed film than can be retained by codeposition of O2 and H2O. This O2 remains trapped until approx. 155 K, where it desorbs in an outburst as water ice crystallizes. Warming of the ice also drastically decreases the intrinsic absorbance of O2 by annealing defects in the ice. We also observe loss of O3 in two stages during heating, which correlates with desorption and possibly chemical reactions with radicals stored in the ice, triggered by the temperature increase.

Design and Use of a Low Cost, Automated Morbidostat for Adaptive Evolution of Bacteria Under Antibiotic Drug Selection.

PubMed

Liu, Po C; Lee, Yi T; Wang, Chun Y; Yang, Ya-Tang

2016-09-27

We describe a low cost, configurable morbidostat for characterizing the evolutionary pathway of antibiotic resistance. The morbidostat is a bacterial culture device that continuously monitors bacterial growth and dynamically adjusts the drug concentration to constantly challenge the bacteria as they evolve to acquire drug resistance. The device features a working volume of ~10 ml and is fully automated and equipped with optical density measurement and micro-pumps for medium and drug delivery. To validate the platform, we measured the stepwise acquisition of trimethoprim resistance in Escherichia coli MG 1655, and integrated the device with a multiplexed microfluidic platform to investigate cell morphology and antibiotic susceptibility. The approach can be up-scaled to laboratory studies of antibiotic drug resistance, and is extendible to adaptive evolution for strain improvements in metabolic engineering and other bacterial culture experiments.

What Makes Red Giants Tick? Linking Tidal Forces, Activity, and Solar-Like Oscillations via Eclipsing Binaries

NASA Astrophysics Data System (ADS)

Rawls, Meredith L.; Gaulme, Patrick; McKeever, Jean; Jackiewicz, Jason

2016-01-01

Thanks to advances in asteroseismology, red giants have become astrophysical laboratories for studying stellar evolution and probing the Milky Way. However, not all red giants show solar-like oscillations. It has been proposed that stronger tidal interactions from short-period binaries and increased magnetic activity on spotty giants are linked to absent or damped solar-like oscillations, yet each star tells a nuanced story. In this work, we characterize a subset of red giants in eclipsing binaries observed by Kepler. The binaries exhibit a range of orbital periods, solar-like oscillation behavior, and stellar activity. We use orbital solutions together with a suite of modeling tools to combine photometry and spectroscopy in a detailed analysis of tidal synchronization timescales, star spot activity, and stellar evolution histories. These red giants offer an unprecedented opportunity to test stellar physics and are important benchmarks for ensemble asteroseismology.

Continuing Evolution of Mars Sample Return

NASA Technical Reports Server (NTRS)

Mattingly, Richard; Matousek, Steve; Jordan, Frank

2004-01-01

This paper addresses the continued evolution of the Groundbreaking MSR concept over the last year. One of the tenets of the low-cost approach is to use substantial heritage from an earlier mission, Mars Science Laboratory (MSL). Recently, the MSL project developed and switched to a revolutionary landing approach, coined 'sky-crane' where the MSL, which is a rover, is lowered gently to the Martian surface from a hovering vehicle. MSR has adopted this approach, again continuing to capitalize on the heritage for a significant portion of the new lander. In parallel, a MSR Technology Board was formed to reexamine MSR technology needs and participate in a continuing refinement of architectural trades. While the focused technology program continues to be definitized through the remainder of this year, the current assessment of what technology development is required, is discussed in this paper. In addition, the results of new trade studies and considerations will be discussed.

The exploration of Titan with an orbiter and a lake probe

NASA Astrophysics Data System (ADS)

Mitri, Giuseppe; Coustenis, Athena; Fanchini, Gilbert; Hayes, Alex G.; Iess, Luciano; Khurana, Krishan; Lebreton, Jean-Pierre; Lopes, Rosaly M.; Lorenz, Ralph D.; Meriggiola, Rachele; Moriconi, Maria Luisa; Orosei, Roberto; Sotin, Christophe; Stofan, Ellen; Tobie, Gabriel; Tokano, Tetsuya; Tosi, Federico

2014-12-01

Fundamental questions involving the origin, evolution, and history of both Titan and the broader Saturnian system can be answered by exploring this satellite from an orbiter and also in situ. We present the science case for an exploration of Titan and one of its lakes from a dedicated orbiter and a lake probe. Observations from an orbit-platform can improve our understanding of Titan's geological processes, surface composition and atmospheric properties. Further, combined measurements of the gravity field, rotational dynamics and electromagnetic field can expand our understanding of the interior and evolution of Titan. An in situ exploration of Titan's lakes provides an unprecedented opportunity to understand the hydrocarbon cycle, investigate a natural laboratory for prebiotic chemistry and habitability potential, and study meteorological and marine processes in an exotic environment. We briefly discuss possible mission scenarios for a future exploration of Titan with an orbiter and a lake probe.

Novel transcriptional networks regulated by CLOCK in human neurons.

PubMed

Fontenot, Miles R; Berto, Stefano; Liu, Yuxiang; Werthmann, Gordon; Douglas, Connor; Usui, Noriyoshi; Gleason, Kelly; Tamminga, Carol A; Takahashi, Joseph S; Konopka, Genevieve

2017-11-01

The molecular mechanisms underlying human brain evolution are not fully understood; however, previous work suggested that expression of the transcription factor CLOCK in the human cortex might be relevant to human cognition and disease. In this study, we investigated this novel transcriptional role for CLOCK in human neurons by performing chromatin immunoprecipitation sequencing for endogenous CLOCK in adult neocortices and RNA sequencing following CLOCK knockdown in differentiated human neurons in vitro. These data suggested that CLOCK regulates the expression of genes involved in neuronal migration, and a functional assay showed that CLOCK knockdown increased neuronal migratory distance. Furthermore, dysregulation of CLOCK disrupts coexpressed networks of genes implicated in neuropsychiatric disorders, and the expression of these networks is driven by hub genes with human-specific patterns of expression. These data support a role for CLOCK-regulated transcriptional cascades involved in human brain evolution and function. © 2017 Fontenot et al.; Published by Cold Spring Harbor Laboratory Press.

INFRARED OBSERVATIONAL MANIFESTATIONS OF YOUNG DUSTY SUPER STAR CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martínez-González, Sergio; Tenorio-Tagle, Guillermo; Silich, Sergiy, E-mail: sergiomtz@inaoep.mx

The growing evidence pointing at core-collapse supernovae as large dust producers makes young massive stellar clusters ideal laboratories to study the evolution of dust immersed in a hot plasma. Here we address the stochastic injection of dust by supernovae, and follow its evolution due to thermal sputtering within the hot and dense plasma generated by young stellar clusters. Under these considerations, dust grains are heated by means of random collisions with gas particles which result in the appearance of  infrared spectral signatures. We present time-dependent infrared spectral energy distributions that are to be expected from young stellar clusters. Our results aremore » based on hydrodynamic calculations that account for the stochastic injection of dust by supernovae. These also consider gas and dust radiative cooling, stochastic dust temperature fluctuations, the exit of dust grains out of the cluster volume due to the cluster wind, and a time-dependent grain size distribution.« less

Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production.

PubMed

Mans, Robert; Daran, Jean-Marc G; Pronk, Jack T

2018-04-01

Evolutionary engineering, which uses laboratory evolution to select for industrially relevant traits, is a popular strategy in the development of high-performing yeast strains for industrial production of fuels and chemicals. By integrating whole-genome sequencing, bioinformatics, classical genetics and genome-editing techniques, evolutionary engineering has also become a powerful approach for identification and reverse engineering of molecular mechanisms that underlie industrially relevant traits. New techniques enable acceleration of in vivo mutation rates, both across yeast genomes and at specific loci. Recent studies indicate that phenotypic trade-offs, which are often observed after evolution under constant conditions, can be mitigated by using dynamic cultivation regimes. Advances in research on synthetic regulatory circuits offer exciting possibilities to extend the applicability of evolutionary engineering to products of yeasts whose synthesis requires a net input of cellular energy. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

CIRIR Programs: Drilling and Research Opportunities at the Rochechouart Impact Structure

NASA Technical Reports Server (NTRS)

Lambert, P.; Alwmark, C.; Baratoux, D.; Brack, A.; Bruneton, P.; Buchner, E.; Claeys, P.; Dence, M.; French, B.; Hoerz, F

2017-01-01

Owing to its size, accessibility and erosional level, the Rochechouart impact structure, dated at 203 +/- 2 Ma (recalc.), is a unique reser-voir of knowledge within the population of the rare terrestrial analogous to large impacts craters observed on planetary surfaces. The site gives direct access to fundamental mechanisms both in impact-related geology (origin and evolution of planets) and biology (habitability of planets, emergence and evolution of life). For the last decade P. Lambert has been installing Rochechouart as International Natural Laboratory for studying impact processes and collateral effects on planetary surfaces. For this purpose the Center for International Research on Impacts and on Rochechouart (CIRIR) was installed on site in 2016 with twofold objectives and activities. First ones are scientific and dedicated to the scientific community. The second are cultural and educational and are dedi-cated to the public sensu lato. We present here the CIRIR, its scientific programs and the related reseach opportunities.

Promising lines of investigations in the realms of laboratory astrophysics with the aid of powerful lasers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Belyaev, V. S., E-mail: belyaev@tsniimash.ru; Batishchev, P. A.; Bolshakov, V. V.

The results of work on choosing and substantiating promising lines of research in the realms of laboratory astrophysics with the aid of powerful lasers are presented. These lines of research are determined by the possibility of simulating, under laboratory conditions, problematic processes of presentday astrophysics, such as (i) the generation and evolution of electromagnetic fields in cosmic space and the role of magnetic fields there at various spatial scales; (ii) the mechanisms of formation and evolution of cosmic gamma-ray bursts and relativistic jets; (iii) plasma instabilities in cosmic space and astrophysical objects, plasma jets, and shock waves; (iv) supernova explosionsmore » and mechanisms of the explosion of supernovae featuring a collapsing core; (v) nuclear processes in astrophysical objects; (vi) cosmic rays and mechanisms of their production and acceleration to high energies; and (vii) astrophysical sources of x-ray radiation. It is shown that the use of existing powerful lasers characterized by an intensity in the range of 10{sup 18}-10{sup 22} W/cm{sup 2} and a pulse duration of 0.1 to 1 ps and high-energy lasers characterized by an energy in excess of 1 kJ and a pulse duration of 1 to 10 ns makes it possible to perform investigations in laboratory astrophysics along all of the chosen promising lines. The results obtained by experimentally investigating laser plasma with the aid of the laser facility created at Central Research Institute of Machine Building (TsNIIMash) and characterized by a power level of 10 TW demonstrate the potential of such facilities for performing a number of experiments in the realms of laboratory astrophysics.« less

Sequence Diversity, Intersubgroup Relationships, and Origins of the Mouse Leukemia Gammaretroviruses of Laboratory and Wild Mice.

PubMed

Bamunusinghe, Devinka; Naghashfar, Zohreh; Buckler-White, Alicia; Plishka, Ronald; Baliji, Surendranath; Liu, Qingping; Kassner, Joshua; Oler, Andrew J; Hartley, Janet; Kozak, Christine A

2016-04-01

Mouse leukemia viruses (MLVs) are found in the common inbred strains of laboratory mice and in the house mouse subspecies ofMus musculus Receptor usage and envelope (env) sequence variation define three MLV host range subgroups in laboratory mice: ecotropic, polytropic, and xenotropic MLVs (E-, P-, and X-MLVs, respectively). These exogenous MLVs derive from endogenous retroviruses (ERVs) that were acquired by the wild mouse progenitors of laboratory mice about 1 million years ago. We analyzed the genomes of seven MLVs isolated from Eurasian and American wild mice and three previously sequenced MLVs to describe their relationships and identify their possible ERV progenitors. The phylogenetic tree based on the receptor-determining regions ofenvproduced expected host range clusters, but these clusters are not maintained in trees generated from other virus regions. Colinear alignments of the viral genomes identified segmental homologies to ERVs of different host range subgroups. Six MLVs show close relationships to a small xenotropic ERV subgroup largely confined to the inbred mouse Y chromosome.envvariations define three E-MLV subtypes, one of which carries duplications of various sizes, sequences, and locations in the proline-rich region ofenv Outside theenvregion, all E-MLVs are related to different nonecotropic MLVs. These results document the diversity in gammaretroviruses isolated from globally distributedMussubspecies, provide insight into their origins and relationships, and indicate that recombination has had an important role in the evolution of these mutagenic and pathogenic agents. Laboratory mice carry mouse leukemia viruses (MLVs) of three host range groups which were acquired from their wild mouse progenitors. We sequenced the complete genomes of seven infectious MLVs isolated from geographically separated Eurasian and American wild mice and compared them with endogenous germ line retroviruses (ERVs) acquired early in house mouse evolution. We did this because the laboratory mouse viruses derive directly from specific ERVs or arise by recombination between different ERVs. The six distinctively different wild mouse viruses appear to be recombinants, often involving different host range subgroups, and most are related to a distinctive, largely Y-chromosome-linked MLV ERV subtype. MLVs with ecotropic host ranges show the greatest variability with extensive inter- and intrasubtype envelope differences and with homologies to other host range subgroups outside the envelope. The sequence diversity among these wild mouse isolates helps define their relationships and origins and emphasizes the importance of recombination in their evolution. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

No apparent cost of evolved immune response in Drosophila melanogaster.

PubMed

Gupta, Vanika; Venkatesan, Saudamini; Chatterjee, Martik; Syed, Zeeshan A; Nivsarkar, Vaishnavi; Prasad, Nagaraj G

2016-04-01

Maintenance and deployment of the immune system are costly and are hence predicted to trade-off with other resource-demanding traits, such as reproduction. We subjected this longstanding idea to test using laboratory experimental evolution approach. In the present study, replicate populations of Drosophila melanogaster were subjected to three selection regimes-I (Infection with Pseudomonas entomophila), S (Sham-infection with MgSO4 ), and U (Unhandled Control). After 30 generations of selection flies from the I regime had evolved better survivorship upon infection with P. entomophila compared to flies from U and S regimes. However, contrary to expectations and previous reports, we did not find any evidence of trade-offs between immunity and other life history related traits, such as longevity, fecundity, egg hatchability, or development time. After 45 generations of selection, the selection was relaxed for a set of populations. Even after 15 generations, the postinfection survivorship of populations under relaxed selection regime did not decline. We speculate that either there is a negligible cost to the evolved immune response or that trade-offs occur on traits such as reproductive behavior or other immune mechanisms that we have not investigated in this study. Our research suggests that at least under certain conditions, life-history trade-offs might play little role in maintaining variation in immunity. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

Phase B: Final definition and preliminary design study for the initial Atmospheric Cloud Physics Laboratory (ACPL), a spacelab mission payload

NASA Technical Reports Server (NTRS)

1976-01-01

A preliminary identification of the Supporting Research and Technology (SR&T) necessary during the planned evolution of atmospheric cloud physics is discussed. All requirements are for subsequent flights over its expected ten year lifetime. Those components identified as requiring some SR&T work prior to inclusion are listed. A data sheet is included for each item, briefly justifying the need, giving general objectives for the proposed development effort and identifying approximate schedule requirements on the program.

Physical metallurgy of BATMAN II Ti-bearing martensitic steels

NASA Astrophysics Data System (ADS)

Pilloni, L.; Attura, F.; Calza-Bini, A.; De Santis, G.; Filacchioni, G.; Carosi, A.; Amato, S.

1998-10-01

Seven laboratory experimental casts of 7-9% Cr Ti-bearing martensitic steels were obtained via VIM process. Plates of 25 mm thickness were produced by hot rolling. On each cast CCT diagrams and critical temperatures were determined. Several austenitizing treatments were performed to study the grain size evolution. The effect of microstructure on impact properties were finally investigated. This paper discusses the role of chemical composition on microstructural and physical properties and shows the beneficial effect either of low-temperature austenitizing or double-austenitizing steps on impact properties.

A study of optical scattering methods in laboratory plasma diagnosis

NASA Technical Reports Server (NTRS)

Phipps, C. R., Jr.

1972-01-01

Electron velocity distributions are deduced along axes parallel and perpendicular to the magnetic field in a pulsed, linear Penning discharge in hydrogen by means of a laser Thomson scattering experiment. Results obtained are numerical averages of many individual measurements made at specific space-time points in the plasma evolution. Because of the high resolution in k-space and the relatively low maximum electron density 2 x 10 to the 13th power/cu cm, special techniques were required to obtain measurable scattering signals. These techniques are discussed and experimental results are presented.

Dynamics of West Nile virus evolution in mosquito vectors.

PubMed

Grubaugh, Nathan D; Ebel, Gregory D

2016-12-01

West Nile virus remains the most common cause of arboviral encephalitis in North America. Since it was introduced, it has undergone adaptive genetic change as it spread throughout the continent. The WNV transmission cycle is relatively tractable in the laboratory. Thus the virus serves as a convenient model system for studying the population biology of mosquito-borne flaviviruses as they undergo transmission to and from mosquitoes and vertebrates. This review summarizes the current knowledge regarding the population dynamics of this virus within mosquito vectors. Copyright © 2016 Elsevier B.V. All rights reserved.

Summary of Global Ozone Measurements Collected from Field Campaigns

NASA Astrophysics Data System (ADS)

Aguilera, J.; Salazar, V.

2013-12-01

The goal of the NCAR Earth Observing Laboratory data services is to advance science through delivering high-quality project data and meta data in ways that are as transparent, secure, and easily accessible as possible. By using EOL's existing infrastructure and applying data mining techniques, we explored global ozone measurements collected during EOL supported airborne field campaigns. This study highlights ozone concentrations addressing a diverse set of science objectives, and how these timed measurements contribute to the understanding of the state of the atmosphere and evolution of the different measuring techniques.

Evolutionary biology through the lens of budding yeast comparative genomics.

PubMed

Marsit, Souhir; Leducq, Jean-Baptiste; Durand, Éléonore; Marchant, Axelle; Filteau, Marie; Landry, Christian R

2017-10-01

The budding yeast Saccharomyces cerevisiae is a highly advanced model system for studying genetics, cell biology and systems biology. Over the past decade, the application of high-throughput sequencing technologies to this species has contributed to this yeast also becoming an important model for evolutionary genomics. Indeed, comparative genomic analyses of laboratory, wild and domesticated yeast populations are providing unprecedented detail about many of the processes that govern evolution, including long-term processes, such as reproductive isolation and speciation, and short-term processes, such as adaptation to natural and domestication-related environments.

Chemically evolving systems for oil recovery enhancement in heavy oil deposits

NASA Astrophysics Data System (ADS)

Altunina, L. K.; Kuvshinov, I. V.; Kuvshinov, V. A.; Stasyeva, L. A.

2017-12-01

This work presents the results of laboratory studies and field tests of new physicochemical technologies for enhanced oil recovery of heavy oil fields under natural development conditions and with thermal-steam stimulation using oil-displacing "smart" systems. The systems are based on surfactants and buffer systems. Their rheological and acid-base properties can be regulated by their chemical evolution directly in the formation. Field tests of the technologies carried out on high-viscosity oil deposit in the Usinskoye oilfield have shown that the EOR technologies are environmentally friendly and technologically effective.

Anatomic pathology laboratory information systems: a review.

PubMed

Park, Seung Lyung; Pantanowitz, Liron; Sharma, Gaurav; Parwani, Anil Vasdev

2012-03-01

The modern anatomic pathology laboratory depends on a reliable information infrastructure to register specimens, record gross and microscopic findings, regulate laboratory workflow, formulate and sign out report(s), disseminate them to the intended recipients across the whole health system, and support quality assurance measures. This infrastructure is provided by the Anatomical Pathology Laboratory Information Systems (APLIS), which have evolved over decades and now are beginning to support evolving technologies like asset tracking and digital imaging. As digital pathology transitions from "the way of the future" to "the way of the present," the APLIS continues to be one of the key effective enablers of the scope and practice of pathology. In this review, we discuss the evolution, necessary components, architecture and functionality of the APLIS that are crucial to today's practicing pathologist and address the demands of emerging trends on the future APLIS.

Isolation barriers between petunia axillaris and Petunia integrifolia (Solanaceae).

PubMed

Dell'olivo, Alexandre; Hoballah, Maria Elena; Gübitz, Thomas; Kuhlemeier, Cris

2011-07-01

The isolation barriers restricting gene flow between populations or species are of crucial interest for understanding how biological species arise and how they are maintained. Few studies have examined the entire range of possible isolation barriers from geographic isolation to next generation hybrid viability. Here, we present a detailed analysis of isolation barriers between two flowering plant species of the genus Petunia (Solanaceae). Petunia integrifolia and P. axillaris feature divergent pollination syndromes but can produce fertile hybrids when crossed in the laboratory. Both Petunia species are primarily isolated in space but appear not to hybridize in sympatry. Our experiments demonstrate that pollinator isolation is very high but not strong enough to explain the absence of hybrids in nature. However, pollinator isolation in conjunction with male gametic isolation (i.e., pollen-pistil interaction) can explain the lack of natural hybridization, while postzygotic isolation barriers are low or nonexistent. Our study supports the notion that reproductive isolation in flowering plants is mainly caused by pre- rather than postzygotic isolation mechanisms. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Risk factors of developing asthma in children with recurrent wheezing in the first three years of life.

PubMed

Cortés Alvarez, N; Martín Mateos, M A; Plaza Martín, A M; Giner Muñoz, M T; Piquer, M; Sierra Martínez, J I

2007-01-01

recurrent wheezing is a common problem during the first years of life, but it is still difficult to identify which of these children may develop asthma in the future. To study risk factors of developing asthma in a group of patients with frequent wheezing during the first three years of life. A prospective study was performed of a group of 60 patients, aged below three, referred to our Hospital for recurrent wheezing. Age, sex, parental and personal history of atopy, clinical features, laboratory tests, evolution and response to treatment were analyzed. 60 patients were enrolled in study. Most of children were boys and have had the first episode of wheezing after the 6 months of life. 63 % had personal history of atopy and 55 % parental history of allergy. The group of atopic children had more wheezing exacerbations and worse evolution than the group of non atopic. They also had more treatment necessities. The identification of young children at high risk of developing asthma could permit an early intervention before irreversible changes in the airway appeared.

Structural evolution of detonation carbon in Composition B-3 by X-ray scattering

NASA Astrophysics Data System (ADS)

Firestone, Millicent; Dattelbaum, Dana; Gustavsen, Richard; Podlesak, David; Jensen, Brian; Watkins, Erik; Ringstrand, Bryan; Willey, Trevor; Lauderbach, Lisa; Hodgin, Ralph; Bagge-Hansen, Michael; van Buuren, Tony; Graber, Tim

2015-06-01

High explosive detonation products are primarily composed of solid carbon products. Prior electron microscopy studies have revealed that detonation carbon can contain a variety of unique carbon particles possessing novel morphologies, including core-shell, onions and ribbons. Despite these observations very little is known on what conditions leads to the production of novel carbon nanoparticles. A fuller understanding on conditions that generate such novel carbon materials would greatly benefit from time-resolved studies that probe particle formation and evolution through and beyond the chemical reaction zone. Here, we report initial experiments employing time-resolved X-ray scattering measurements to monitor the detonation carbon products formed from Composition B-3 (60% TNT, 40% RDX). Time-resolved SAXS (TRSAXS) studies were performed at the Dynamic Compression Sector (DCS, Sector 35) at the Advanced Photon Source (Argonne National Laboratory). In-situ formation of solid carbon behind the detonation front was probed on the nanosecond time scale. Analysis of the scattering patterns using model independent methods (Porod and Guinier) yielded insights into particle morphology and interfaces.

Comparative analysis of 3D data accuracy of single tooth and full dental arch captured by different intraoral and laboratory digital impression systems.

PubMed

Ryakhovskiy, A N; Kostyukova, V V

2016-01-01

The aim of this study was to compare the accuracy of digital impressions taken by different intraoral and laboratory scanners. For this purpose a synthetic jaw model with prepared tooth was scanned using intraoral scanning systems: 3D Progress (MHT S.P.A., IT - MHT Optic Research AG, CH); True Definition (3M ESPE, USA); Trios (3Shape A/S, DNK); CEREC AC Bluecam, CEREC Omnicam (Sirona Dental System GmbH, DE); Planscan (Planmeca, FIN); and laboratory scanning systems: s600 ARTI (Zirkonzahn GmbH, IT); Imetric Iscan D104, CH); D900 (3Shape A/S, DNK); Zfx Evolution (Zfx GmbH, DE) (each n=10). Reference-scanning was done by ATOS Core (GOM mbH, DE). The resulting digital impressions were superimposed with the master-scan. The measured deviations by points (trueness) for intraoral scanners were: True Definition - 15.0±2.85 μm (single tooth) and 45.0±19.11 µm (full arch); Trios - 17.1±1.44 and 58.8±27.36 µm; CEREC AC Bluecam - 22.3±5.58 and 20.3±4.13 µm; CEREC Omnicam - 25.0±1.06 and 78.5±27.03 µm; 3D Progress - 26.4±5.75 and 213.5±47.44 µm; Planscan - 54.6±11.58 and 205.2±21.73 µm. For laboratory scanners: Imetric Iscan D104 - 10.2±0.87 μm (stamp) and 65.3±5.36 µm (full arch); Zfx Evolution - 12.8±0.83 and 66.4±2.80 µm; Zirkonzahn s600 ARTI - 15.1±1.36 and 65.9±1.33 µm; 3Shape D900 - 19.9±0.53 and 63.6±0.83 µm. Precision was: True Definition - 19.9±2.77 μm (single tooth) and 40.1±11.04 µm (full arch); Trios - 25.8±2.49 and 69.9±18.95 µm; CEREC AC Bluecam - 36.4±2.78 and 46.6±3.44 µm; CEREC Omnicam - 37.6±3.29 and 76.2±13.36 µm; 3D Progress - 76.9±11.04 and 102.2±8.06 µm; Planscan - 74.3±6.58 and 93.9±15.32 µm. For laboratory scanners: Imetric Iscan D104 - 11.7±4.39 μm (stamp) and 31.2±5.58 µm (full arch); Zfx Evolution - 8.4±0.49 and 24.8±3.98 µm; Zirkonzahn s600 ARTI - 13.4±6.74 and 20.7±4.34 µm; 3Shape D900 - 10.4±0.93 and 17.8±0.62 µm. Whole deviation of the dental arch was: 3D Progress - 98.0±5.70 µm; True Definition - 47.1±9.61 µm; Trios - 59.6±18.77 µm; Omnicam - 77.8±8.79 µm; Planscan - 107.9±1.58 µm; Bluecam - 46.8±1.22 µm; Imetric - 36.4±1.62 µm; Zfx Evolution - 29.5±0.58 µm; S600 ARTI - 35.0±1.04 µm; 3Shape D900 - 32.7±0.29 µm. The results indicate that digital impressions provide enough accuracy for clinical application.

Qualitative Analysis of Fourteen White Solids and Two Mixtures Using Household Chemicals.

ERIC Educational Resources Information Center

Oliver-Hoyo, Maria; Allen, DeeDee; Solomon, Sally; Brook, Bryan; Ciraolo, Justine; Daly, Shawn; Jackson, Leia

2001-01-01

Describes a laboratory experiment in which students identify 11 white solids readily available in drugstores and supermarkets. Investigates solubility, pH, copper reduction, evolution of carbon dioxide bubbles, formation of starch-iodine complex, and formation of an insoluble hydroxide. (YDS)

Novel laboratory simulations of astrophysical jets

NASA Astrophysics Data System (ADS)

Brady, Parrish Clawson

This thesis was motivated by the promise that some physical aspects of astrophysical jets and collimation processes can be scaled to laboratory parameters through hydrodynamic scaling laws. The simulation of astrophysical jet phenomena with laser-produced plasmas was attractive because the laser- target interaction can inject energetic, repeatable plasma into an external environment. Novel laboratory simulations of astrophysical jets involved constructing and using the YOGA laser, giving a 1064 nm, 8 ns pulse laser with energies up to 3.7 + 0.2 J . Laser-produced plasmas were characterized using Schlieren, interferometry and ICCD photography for their use in simulating jet and magnetosphere physics. The evolution of the laser-produced plasma in various conditions was compared with self-similar solutions and HYADES computer simulations. Millimeter-scale magnetized collimated outflows were produced by a centimeter scale cylindrically symmetric electrode configuration triggered by a laser-produced plasma. A cavity with a flared nozzle surrounded the center electrode and the electrode ablation created supersonic uncollimated flows. This flow became collimated when the center electrode changed from an anodeto a cathode. The plasma jets were in axially directed permanent magnetic fields with strengths up to 5000 Gauss. The collimated magnetized jets were 0.1-0. 3 cm wide, up to 2.0 cm long, and had velocities of ~4.0 × 10 6 cm/s. The dynamics of the evolution of the jet were compared qualitatively and quantitatively with fluxtube simulations from Bellan's formulation [6] giving a calculated estimate of ~2.6 × 10 6 cm/s for jet evolution velocity and evidence for jet rotation. The density measured with interferometry was 1.9 ± 0.2 × 10 17 cm -3 compared with 2.1 × 10 16 cm -3 calculated with Bellan's pressure balance formulation. Kinks in the jet column were produced consistent with the Kruskal-Shafranov condition which allowed stable and symmetric jets to form with the background magnetic fields. The Euler number for the laboratory jet was 9 compared with an estimate of 40 for young stellar object jets [135] which demonstrated adequate scaling between the two frames. A second experiment was performed concerning laboratory simulations of magnetospheres with plasma winds impinging on permanent magnetic dipoles. The ratio of the magnetopause measured with ICCD photography to the calculated magnetopause standoff distance was ~2.

Empirical analysis of RNA robustness and evolution using high-throughput sequencing of ribozyme reactions.

PubMed

Hayden, Eric J

2016-08-15

RNA molecules provide a realistic but tractable model of a genotype to phenotype relationship. This relationship has been extensively investigated computationally using secondary structure prediction algorithms. Enzymatic RNA molecules, or ribozymes, offer access to genotypic and phenotypic information in the laboratory. Advancements in high-throughput sequencing technologies have enabled the analysis of sequences in the lab that now rivals what can be accomplished computationally. This has motivated a resurgence of in vitro selection experiments and opened new doors for the analysis of the distribution of RNA functions in genotype space. A body of computational experiments has investigated the persistence of specific RNA structures despite changes in the primary sequence, and how this mutational robustness can promote adaptations. This article summarizes recent approaches that were designed to investigate the role of mutational robustness during the evolution of RNA molecules in the laboratory, and presents theoretical motivations, experimental methods and approaches to data analysis. Copyright © 2016 Elsevier Inc. All rights reserved.

Program user's manual: cryogen system for the analysis for the Mirror Fusion Test Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1979-04-01

The Mirror Fusion Test Facility being designed and constructed at the Lawrence Livermore Laboratory requires a liquid helium liquefaction, storage, distribution, and recovery system and a liquid nitrogen storage and distribution system. To provide a powerful analytical tool to aid in the design evolution of this system through hardware, a thermodynamic fluid flow model was developed. This model allows the Lawrence Livermore Laboratory to verify that the design meets desired goals and to play what if games during the design evolution. For example, what if the helium flow rate is changed in the magnet liquid helium flow loop; how doesmore » this affect the temperature, fluid quality, and pressure. This manual provides all the information required to run all or portions of this program as desired. In addition, the program is constructed in a modular fashion so changes or modifications can be made easily to keep up with the evolving design.« less

Bacterial cooperation in the wild and in the clinic: are pathogen social behaviours relevant outside the laboratory?

PubMed

Harrison, Freya

2013-02-01

Individual bacterial cells can communicate via quorum sensing, cooperate to harvest nutrients from their environment, form multicellular biofilms, compete over resources and even kill one another. When the environment that bacteria inhabit is an animal host, these social behaviours mediate virulence. Over the last decade, much attention has focussed on the ecology, evolution and pathology of bacterial cooperation, and the possibility that it could be exploited or destabilised to treat infections. But how far can we really extrapolate from theoretical predictions and laboratory experiments to make inferences about 'cooperative' behaviours in hosts and reservoirs? To determine the likely importance and evolution of cooperation 'in the wild', several questions must be addressed. A recent paper that reports the dynamics of bacterial cooperation and virulence in a field experiment provides an excellent nucleus for bringing together key empirical and theoretical results which help us to frame - if not completely to answer - these questions. Copyright © 2013 WILEY Periodicals, Inc.

Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen

PubMed Central

Biondi, Elisa; Lane, Joshua D.; Das, Debasis; Dasgupta, Saurja; Piccirilli, Joseph A.; Hoshika, Shuichi; Bradley, Kevin M.; Krantz, Bryan A.; Benner, Steven A.

2016-01-01

Reported here is a laboratory in vitro evolution (LIVE) experiment based on an artificially expanded genetic information system (AEGIS). This experiment delivers the first example of an AEGIS aptamer that binds to an isolated protein target, the first whose structural contact with its target has been outlined and the first to inhibit biologically important activities of its target, the protective antigen from Bacillus anthracis. We show how rational design based on secondary structure predictions can also direct the use of AEGIS to improve the stability and binding of the aptamer to its target. The final aptamer has a dissociation constant of ∼35 nM. These results illustrate the value of AEGIS-LIVE for those seeking to obtain receptors and ligands without the complexities of medicinal chemistry, and also challenge the biophysical community to develop new tools to analyze the spectroscopic signatures of new DNA folds that will emerge in synthetic genetic systems replacing standard DNA and RNA as platforms for LIVE. PMID:27701076

The spikes from Richtmyer-Meshkov instabilities in pused power cylindrical experiments

NASA Astrophysics Data System (ADS)

Rousculp, Chris; Cheng, Baolian; Oro, David; Griego, Jeffrey; Patten, Austin; Neukirch, Levi; Reinovsky, Robert; Turchi, Peter; Bradley, Joeph; Reass, Wlliam; Fierro, Franklin; Saunders, Alexsander; Mariam, Fesseha; Freeman, Matthew; Tang, Zhaowen

2017-06-01

The time evolution of the metal spikes resulting from the Richtmyer-Meshkov instability (RMI) of single-mode perturbations on the inside surface of a tin sample in cylindrical geometry has been measured for the first time. The shock condition was produced by a magnetically driven aluminum flyer utilizing the PHELIX capacitor bank. By varying the flyer velocity, a set of experiments conducted at the Los Alamos National Laboratory has explored the RMI evolution in the different release states (fluid, mixed, solid) of tin. The perturbation inversion and growth rate of the spikes were diagnosed in each experiment with a 21-image proton radiography (pRad) movie. Both theoretical model and numerical simulations are performed. Numerical simulations, theory and experimental data are in good agreement. Detailed analysis of the spike growth rates, comparison to planer geometry, as well as theory and computations will be presented. This work was conducted under the auspices of the U.S. Department of Energy by the Los Alamos National Laboratory under Contract No. W-7405-ENG-36.

Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System.

PubMed

McCloskey, Douglas; Xu, Sibei; Sandberg, Troy E; Brunk, Elizabeth; Hefner, Ying; Szubin, Richard; Feist, Adam M; Palsson, Bernhard O

2018-06-15

Aromatic metabolites provide the backbone for numerous industrial and pharmaceutical compounds of high value. The Phosphotransferase System (PTS) is common to many bacteria, and is the primary mechanism for glucose uptake by Escherichia coli. The PTS was removed to conserve phosphoenolpyruvate (pep), which is a precursor for aromatic metabolites and consumed by the PTS, for aromatic metabolite production. Replicate adaptive laboratory evolution (ALE) of PTS and detailed omics data sets collected revealed that the PTS bridged the gap between respiration and fermentation, leading to distinct high fermentative and high respiratory rate phenotypes. It was also found that while all strains retained high levels of aromatic amino acid (AAA) biosynthetic precursors, only one replicate from the high glycolytic clade retained high levels of intracellular AAAs. The fast growth and high AAA precursor phenotypes could provide a starting host for cell factories targeting the overproduction aromatic metabolites. Copyright © 2018 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Difficulties in Laboratory Studies and Astronomical Observations of Organic Molecules: Hydroxyacetone and Lactic Acid

NASA Technical Reports Server (NTRS)

Apponi, A. J.; Brewster, M. A.; Hoy, J.; Ziurys, L. M.

2006-01-01

For the past 35 years, radio astronomy has revealed a rich organic chemistry in the interstellar gas, which is exceptionally complex towards active star-forming regions. New solar systems condense out of this gas and may influence the evolution of life on newly formed planets. Much of the biologically important functionality is present among the some 130 gas-phase molecules found to date, including alcohols, aldehydes, ketones, acids, amines, amides and even the simplest sugar - glycolaldehyde. Still, many unidentified interstellar radio signals remain, and their identification relies on further laboratory study. The molecules hydroxyacetone and lactic acid are relatively small organic molecules, but possess rather complex rotational spectra owing to their high asymmetry. Hydroxyacetone is particularly problematic because it possess a very low barrier to internal rotation, and exhibits strong coupling of the free-rotor states with the overall rotation of the molecule. As in the case of acetamide, a full decomposition method was employed to order the resultant eigenstates onto normal asymmetric top eigenvectors.

The Evolution of Interstellar Gas: Massive Stars and the Dispersal of Neutral Material

NASA Technical Reports Server (NTRS)

Federman, Steven R.

2003-01-01

We studied the effects of newly formed O and B stars on their surrounding interstellar material through a combination of observations and theoretical modeling. The observational data came from measurements of absorption seen in the spectra of background, newly formed stars. Particular attention was given to stellar radiation which converts molecular to atomic material. Laboratory data on absorption cross sections relevant to the analysis and interpretation of carbon monoxide formed part of the effort. The grant supported Postdoctoral Fellows, Drs. Min Yan and Yaron Sheffer, and a laboratory technician. Though the students themselves were not supported. one M.S. Thesis and two Ph.D. dissertations from the University of Toledo were based on the research done under the grant. The research accomplished under this grant led directly to other funded programs. An observing proposal to study the chemistry of diffuse molecular clouds in the Large and Small Magellanic Clouds with ESO s Very Large Telescope was another example of a successful outcome of my LTSA program.

Cultural transmission results in convergence towards colour term universals

PubMed Central

Xu, Jing; Dowman, Mike; Griffiths, Thomas L.

2013-01-01

As in biological evolution, multiple forces are involved in cultural evolution. One force is analogous to selection, and acts on differences in the fitness of aspects of culture by influencing who people choose to learn from. Another force is analogous to mutation, and influences how culture changes over time owing to errors in learning and the effects of cognitive biases. Which of these forces need to be appealed to in explaining any particular aspect of human cultures is an open question. We present a study that explores this question empirically, examining the role that the cognitive biases that influence cultural transmission might play in universals of colour naming. In a large-scale laboratory experiment, participants were shown labelled examples from novel artificial systems of colour terms and were asked to classify other colours on the basis of those examples. The responses of each participant were used to generate the examples seen by subsequent participants. By simulating cultural transmission in the laboratory, we were able to isolate a single evolutionary force—the effects of cognitive biases, analogous to mutation—and examine its consequences. Our results show that this process produces convergence towards systems of colour terms similar to those seen across human languages, providing support for the conclusion that the effects of cognitive biases, brought out through cultural transmission, can account for universals in colour naming. PMID:23486436

Laboratory Experiments on Meandering Meltwater Channels

NASA Astrophysics Data System (ADS)

Fernandez, R.; Berens, J.; Parker, G.; Stark, C. P.

2017-12-01

Meandering channels of all scales and flowing over a wide variety of media have common planform patterns. Although the analogy in planform suggests there is a common underlying framework, the constitutive relations driving planform evolution through vertical incision/deposition and lateral migration differ from medium to medium. The driving processes in alluvial and mixed bedrock-alluvial meandering channels have been studied substantially over the last decades. However, this is not the case for meandering channels in other media such as ice or soluble rock. Here we present results from experiments conducted at the Ven Te Chow Hydrosystems Laboratory of the University of Illinois at Urbana-Champaign on meltwater meandering channels. A rivulet is carved into an ice block and water is allowed to flow at a constant discharge. Planform evolution is analyzed with time lapse imaging and complemented with rubber molds of the channel once the experiment is over. These molds give us the full 3D structure of the meandering, including incisional overhang. Vertical incision rates are measured throughout the run by taking elevations along the channel, and these measurements are complemented with analysis from the molds. We show examples of meandering of intense amplitude with deep overhangs. Features resembling scroll bars document cyclically punctuated melting. We report on lateral migration rates, incision rates, sinuosity, channel depths, channel widths, reach averaged velocities, bend wavelengths and amplitudes and compare them to values reported in the literature for alluvial rivers.

Adaptation of the autotrophic acetogen Sporomusa ovata to methanol accelerates the conversion of CO2 to organic products

PubMed Central

Tremblay, Pier-Luc; Höglund, Daniel; Koza, Anna; Bonde, Ida; Zhang, Tian

2015-01-01

Acetogens are efficient microbial catalysts for bioprocesses converting C1 compounds into organic products. Here, an adaptive laboratory evolution approach was implemented to adapt Sporomusa ovata for faster autotrophic metabolism and CO2 conversion to organic chemicals. S. ovata was first adapted to grow quicker autotrophically with methanol, a toxic C1 compound, as the sole substrate. Better growth on different concentrations of methanol and with H2-CO2 indicated the adapted strain had a more efficient autotrophic metabolism and a higher tolerance to solvent. The growth rate on methanol was increased 5-fold. Furthermore, acetate production rate from CO2 with an electrode serving as the electron donor was increased 6.5-fold confirming that the acceleration of the autotrophic metabolism of the adapted strain is independent of the electron donor provided. Whole-genome sequencing, transcriptomic, and biochemical studies revealed that the molecular mechanisms responsible for the novel characteristics of the adapted strain were associated with the methanol oxidation pathway and the Wood-Ljungdahl pathway of acetogens along with biosynthetic pathways, cell wall components, and protein chaperones. The results demonstrate that an efficient strategy to increase rates of CO2 conversion in bioprocesses like microbial electrosynthesis is to evolve the microbial catalyst by adaptive laboratory evolution to optimize its autotrophic metabolism. PMID:26530351

Cumulative culture in the laboratory: methodological and theoretical challenges.

PubMed

Miton, Helena; Charbonneau, Mathieu

2018-05-30

In the last decade, cultural transmission experiments (transmission chains, replacement, closed groups and seeded groups) have become important experimental tools in investigating cultural evolution. However, these methods face important challenges, especially regarding the operationalization of theoretical claims. In this review, we focus on the study of cumulative cultural evolution, the process by which traditions are gradually modified and, for technological traditions in particular, improved upon over time. We identify several mismatches between theoretical definitions of cumulative culture and their implementation in cultural transmission experiments. We argue that observed performance increase can be the result of participants learning faster in a group context rather than effectively leading to a cumulative effect. We also show that in laboratory experiments, participants are asked to complete quite simple tasks, which can undermine the evidential value of the diagnostic criterion traditionally used for cumulative culture (i.e. that cumulative culture is a process that produces solutions that no single individual could have invented on their own). We show that the use of unidimensional metrics of cumulativeness drastically curtail the variation that may be observed, which raises specific issues in the interpretation of the experimental evidence. We suggest several solutions to these mismatches (learning times, task complexity and variation) and develop the use of design spaces in experimentally investigating old and new questions about cumulative culture. © 2018 The Author(s).

A unified theory for ice vapor growth suitable for cloud models: Testing and implications for cold cloud evolution

NASA Astrophysics Data System (ADS)

Zhang, Chengzhu

A new microphysical model for the vapor growth and aspect ratio evolution of atmospheric ice crystals is presented. The method is based on the adaptive habit model of Chen and Lamb (1994), but is modified to include surface kinetic processes for crystal growth. Inclusion of surface kinetic effects is accomplished with a new theory that accounts for axis dependent growth. Deposition coefficients (growth efficiencies) are predicted for two axis directions based on laboratory-determined parameters for growth initiation (critical supersaturations) on each face. In essence, the new theory extends the adaptive habit approach of Chen and Lamb (1994) to ice saturation states below that of liquid saturation, where Chen and Lamb (1994) is likely most valid. The new model is used to simulate changes in crystal primary habit as a function of temperature and ice supersaturation. Predictions are compared with a detailed hexagonal growth model both in a single particle framework and in a Lagrangian parcel model to indicate the accuracy of the new method. Moreover, predictions of the ratio of the axis deposition coefficients match laboratory-generated data. A parameterization for predicting deposition coefficients is developed for the bulk microphysics frame work in Regional Atmospheric Modeling System (RAMS). Initial eddy-resolving model simulation is conducted to study the effect of surface kinetics on microphysical and dynamical processes in cold cloud development.

Deciphering Late-Pleistocence landscape evolution: linking proxies by combining pedo-stratigraphy and luminescence dating

NASA Astrophysics Data System (ADS)

Kreutzer, Sebastian; Meszner, Sascha; Faust, Dominik; Fuchs, Markus

2014-05-01

Interpreting former landscape evolution asks for understanding the processes that sculpt such landforms by means of deciphering complex systems. For reconstructing terrestrial Quaternary environments based on loess archives this might be considered, at least, as a three step process: (1) Identifying valuable records in appropriate morphological positions in a previously defined research area, (2) analysing the profiles by field work and laboratory methods and finally (3) linking the previously considered pseudo-isolated systems to set up a comprehensive picture. Especially the first and the last step might bring some pitfalls, as it is tempting to specify single records as pseudo-isolated, closed systems. They might be, with regard to their preservation in their specific morphological position, but in fact they are part of a complex, open system. Between 2008 and 2013, Late-Pleistocene loess archives in Saxony have been intensively investigated by field and laboratory methods. Linking pedo- and luminescence dating based chronostratigraphies, a composite profile for the entire Saxonian Loess Region has been established. With this, at least, two-fold approach we tried to avoid misinterpretations that might appear when focussing on one standard profile in an open morphological system. Our contribution focuses on this multi-proxy approach to decipher the Late-Pleistocene landscape evolution in the Saxonian Loess Region. Highlighting the challenges and advantages of combining different methods, we believe that (1) this multi-proxy approach is without alternative, (2) the combination of different profiles may simplify the more complex reality, but it may be a useful generalisation to understand and reveal the stratigraphical significance of the landscape evolution in this region.

Unified law of evolution of experimental gouge-filled fault for fast and slow slip events at slider frictional experiments

NASA Astrophysics Data System (ADS)

Ostapchuk, Alexey; Saltykov, Nikolay

2017-04-01

Excessive tectonic stresses accumulated in the area of rock discontinuity are released while a process of slip along preexisting faults. Spectrum of slip modes includes not only creeps and regular earthquakes but also some transitional regimes - slow-slip events, low-frequency and very low-frequency earthquakes. However, there is still no agreement in Geophysics community if such fast and slow events have mutual nature [Peng, Gomberg, 2010] or they present different physical phenomena [Ide et al., 2007]. Models of nucleation and evolution of fault slip events could be evolved by laboratory experiments in which regularities of shear deformation of gouge-filled fault are investigated. In the course of the work we studied deformation regularities of experimental fault by slider frictional experiments for development of unified law of evolution of fault and revelation of its parameters responsible for deformation mode realization. The experiments were conducted as a classic slider-model experiment, in which block under normal and shear stresses moves along interface. The volume between two rough surfaces was filled by thin layer of granular matter. Shear force was applied by a spring which deformed with a constant rate. In such experiments elastic energy was accumulated in the spring, and regularities of its releases were determined by regularities of frictional behaviour of experimental fault. A full spectrum of slip modes was simulated in laboratory experiments. Slight change of gouge characteristics (granule shape, content of clay), viscosity of interstitial fluid and level of normal stress make it possible to obtained gradual transformation of the slip modes from steady sliding and slow slip to regular stick-slip, with various amplitude of 'coseismic' displacement. Using method of asymptotic analogies we have shown that different slip modes can be specified in term of single formalism and preparation of different slip modes have uniform evolution law. It is shown that shear stiffness of experimental fault is the parameter, which control realization of certain slip modes. It is worth to be mentioned that different serious of transformation is characterized by functional dependences, which have general view and differ only in normalization factors. Findings authenticate that slow and fast slip events have mutual nature. Determination of fault stiffness and testing of fault gouge allow to estimate intensity of seismic events. The reported study was funded by RFBR according to the research project № 16-05-00694.

Evaluation and modelling of the size fractionated aerosol particle number concentration measurements nearby a major road in Helsinki - Part I: Modelling results within the LIPIKA project

NASA Astrophysics Data System (ADS)

Pohjola, M. A.; Pirjola, L.; Karppinen, A.; Härkönen, J.; Korhonen, H.; Hussein, T.; Ketzel, M.; Kukkonen, J.

2007-08-01

A field measurement campaign was conducted near a major road "Itäväylä" in an urban area in Helsinki in 17-20 February 2003. Aerosol measurements were conducted using a mobile laboratory "Sniffer" at various distances from the road, and at an urban background location. Measurements included particle size distribution in the size range of 7 nm-10 μm (aerodynamic diameter) by the Electrical Low Pressure Impactor (ELPI) and in the size range of 3-50 nm (mobility diameter) by Scanning Mobility Particle Sizer (SMPS), total number concentration of particles larger than 3 nm detected by an ultrafine condensation particle counter (UCPC), temperature, relative humidity, wind speed and direction, driving route of the mobile laboratory, and traffic density on the studied road. In this study, we have compared measured concentration data with the predictions of the road network dispersion model CAR-FMI used in combination with an aerosol process model MONO32. For model comparison purposes, one of the cases was additionally computed using the aerosol process model UHMA, combined with the CAR-FMI model. The vehicular exhaust emissions, and atmospheric dispersion and transformation of fine and ultrafine particles was evaluated within the distance scale of 200 m (corresponding to a time scale of a couple of minutes). We computed the temporal evolution of the number concentrations, size distributions and chemical compositions of various particle size classes. The atmospheric dilution rate of particles is obtained from the roadside dispersion model CAR-FMI. Considering the evolution of total number concentration, dilution was shown to be the most important process. The influence of coagulation and condensation on the number concentrations of particle size modes was found to be negligible on this distance scale. Condensation was found to affect the evolution of particle diameter in the two smallest particle modes. The assumed value of the concentration of condensable organic vapour of 1012 molecules cm-3 was shown to be in a disagreement with the measured particle size evolution, while the modelling runs with the concentration of condensable organic vapour of 109-1010 molecules cm-3 resulted in particle sizes that were closest to the measured values.

Cutaneous tuberculosis: diagnosis, histopathology and treatment - part II.

PubMed

Santos, Josemir Belo dos; Figueiredo, Ana Roberta; Ferraz, Cláudia Elise; Oliveira, Márcia Helena de; Silva, Perla Gomes da; Medeiros, Vanessa Lucília Sileira de

2014-01-01

The evolution in the knowledge of tuberculosis' physiopathology allowed not only a better understanding of the immunological factors involved in the disease process, but also the development of new laboratory tests, as well as the establishment of a histological classification that reflects the host's ability to contain the infectious agent. At the same time, the increasing bacilli resistance led to alterations in the basic tuberculosis treatment scheme in 2009. This article critically examines laboratory and histological investigations, treatment regimens for tuberculosis and possible adverse reactions to the most frequently used drugs.

Cell physiology at the Mount Desert Island Biological Laboratory: a brief look back and forward

PubMed Central

2011-01-01

The Mount Desert Island Biological Laboratory (MDIBL) has played important roles in the development of modern physiological concepts and tools, particularly in the fields of kidney and epithelial cell physiology. Over the last decade, MDIBL has undergone remarkable growth and evolution. This article will briefly review MDIBL's past and outline its future directions. It is hoped that this overview will renew and stimulate interest in MDIBL and, in particular, will encourage an even wider community of physiologists to participate in its ongoing growth and development. PMID:21068363

Disease Diagnostics Research at Los Alamos National Laboratory

ScienceCinema

Mukundan, Harshini

2018-01-16

Human evolution and persistent diseases have existed side-by-side. A recent concern is the re-emergence of tuberculosis, one of the oldest and most challenging diseases known to man. Effective diagnosis can save lives and prevent its spread. This talk will cover how our immune system discriminates between itself and foreign entities and how a new laboratory and nature inspired strategy can detect tuberculosis equally well in human and animal populations. The approach is being extended to other applications such as the identification of strep throat and respiratory infections.

Technology. Part 1

NASA Technical Reports Server (NTRS)

1997-01-01

Session WA3 includes short reports concerning: (1) Physiolab A Cardio Vascular Laboratory; (2) MEDEX: A Flexible Modular Physiological Laboratory; (3) A Sensate Liner for Personnel Monitoring Applications; (4) Secure Remote Access to Physiological Data; (5) DARA Vestibular Equipment Onboard MIR; (6) The Kinelite Project: A New powerful Motion Analysis System for Spacelab Mission; (7) The Technical Evolution of the French Neurosciences Multipurpose Instruments Onboard the MIR Station; (8) Extended Ground-Based Research in Preparation for Life Sciences Experiments; and (9) MEDES Clinical Research Facility as a Tool to Prepare ISSA Space Flights.

Disease Diagnostics Research at Los Alamos National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mukundan, Harshini

2015-04-10

Human evolution and persistent diseases have existed side-by-side. A recent concern is the re-emergence of tuberculosis, one of the oldest and most challenging diseases known to man. Effective diagnosis can save lives and prevent its spread. This talk will cover how our immune system discriminates between itself and foreign entities and how a new laboratory and nature inspired strategy can detect tuberculosis equally well in human and animal populations. The approach is being extended to other applications such as the identification of strep throat and respiratory infections.

Use of Laboratory Data to Model Interstellar Chemistry

NASA Technical Reports Server (NTRS)

Vidali, Gianfranco; Roser, J. E.; Manico, G.; Pirronello, V.

2006-01-01

Our laboratory research program is about the formation of molecules on dust grains analogues in conditions mimicking interstellar medium environments. Using surface science techniques, in the last ten years we have investigated the formation of molecular hydrogen and other molecules on different types of dust grain analogues. We analyzed the results to extract quantitative information on the processes of molecule formation on and ejection from dust grain analogues. The usefulness of these data lies in the fact that these results have been employed by theoreticians in models of the chemical evolution of ISM environments.

Directed evolution of cell size in Escherichia coli.

PubMed

Yoshida, Mari; Tsuru, Saburo; Hirata, Naoko; Seno, Shigeto; Matsuda, Hideo; Ying, Bei-Wen; Yomo, Tetsuya

2014-12-17

In bacteria, cell size affects chromosome replication, the assembly of division machinery, cell wall synthesis, membrane synthesis and ultimately growth rate. In addition, cell size can also be a target for Darwinian evolution for protection from predators. This strong coupling of cell size and growth, however, could lead to the introduction of growth defects after size evolution. An important question remains: can bacterial cell size change and/or evolve without imposing a growth burden? The directed evolution of particular cell sizes, without a growth burden, was tested with a laboratory Escherichia coli strain. Cells of defined size ranges were collected by a cell sorter and were subsequently cultured. This selection-propagation cycle was repeated, and significant changes in cell size were detected within 400 generations. In addition, the width of the size distribution was altered. The changes in cell size were unaccompanied by a growth burden. Whole genome sequencing revealed that only a few mutations in genes related to membrane synthesis conferred the size evolution. In conclusion, bacterial cell size could evolve, through a few mutations, without growth reduction. The size evolution without growth reduction suggests a rapid evolutionary change to diverse cell sizes in bacterial survival strategies.

Natural Selection in Cancer Biology: From Molecular Snowflakes to Trait Hallmarks.

PubMed

Fortunato, Angelo; Boddy, Amy; Mallo, Diego; Aktipis, Athena; Maley, Carlo C; Pepper, John W

2017-02-01

Evolution by natural selection is the conceptual foundation for nearly every branch of biology and increasingly also for biomedicine and medical research. In cancer biology, evolution explains how populations of cells in tumors change over time. It is a fundamental question whether this evolutionary process is driven primarily by natural selection and adaptation or by other evolutionary processes such as founder effects and drift. In cancer biology, as in organismal evolutionary biology, there is controversy about this question and also about the use of adaptation through natural selection as a guiding framework for research. In this review, we discuss the differences and similarities between evolution among somatic cells versus evolution among organisms. We review what is known about the parameters and rate of evolution in neoplasms, as well as evidence for adaptation. We conclude that adaptation is a useful framework that accurately explains the defining characteristics of cancer. Further, convergent evolution through natural selection provides the only satisfying explanation both for how a group of diverse pathologies have enough in common to usefully share the descriptive label of "cancer" and for why this convergent condition becomes life-threatening. Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia

PubMed Central

Kerr, Peter J.; Cattadori, Isabella M.; Fitch, Adam; Geber, Adam; Liu, June; Sim, Derek G.; Boag, Brian; Ghedin, Elodie

2017-01-01

The co-evolution of myxoma virus (MYXV) and the European rabbit occurred independently in Australia and Europe from different progenitor viruses. Although this is the canonical study of the evolution of virulence, whether the genomic and phenotypic outcomes of MYXV evolution in Europe mirror those observed in Australia is unknown. We addressed this question using viruses isolated in the United Kingdom early in the MYXV epizootic (1954–1955) and between 2008–2013. The later UK viruses fell into three distinct lineages indicative of a long period of separation and independent evolution. Although rates of evolutionary change were almost identical to those previously described for MYXV in Australia and strongly clock-like, genome evolution in the UK and Australia showed little convergence. The phenotypes of eight UK viruses from three lineages were characterized in laboratory rabbits and compared to the progenitor (release) Lausanne strain. Inferred virulence ranged from highly virulent (grade 1) to highly attenuated (grade 5). Two broad disease types were seen: cutaneous nodular myxomatosis characterized by multiple raised secondary cutaneous lesions, or an amyxomatous phenotype with few or no secondary lesions. A novel clinical outcome was acute death with pulmonary oedema and haemorrhage, often associated with bacteria in many tissues but an absence of inflammatory cells. Notably, reading frame disruptions in genes defined as essential for virulence in the progenitor Lausanne strain were compatible with the acquisition of high virulence. Combined, these data support a model of ongoing host-pathogen co-evolution in which multiple genetic pathways can produce successful outcomes in the field that involve both different virulence grades and disease phenotypes, with alterations in tissue tropism and disease mechanisms. PMID:28253375

Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia.

PubMed

Kerr, Peter J; Cattadori, Isabella M; Rogers, Matthew B; Fitch, Adam; Geber, Adam; Liu, June; Sim, Derek G; Boag, Brian; Eden, John-Sebastian; Ghedin, Elodie; Read, Andrew F; Holmes, Edward C

2017-03-01

The co-evolution of myxoma virus (MYXV) and the European rabbit occurred independently in Australia and Europe from different progenitor viruses. Although this is the canonical study of the evolution of virulence, whether the genomic and phenotypic outcomes of MYXV evolution in Europe mirror those observed in Australia is unknown. We addressed this question using viruses isolated in the United Kingdom early in the MYXV epizootic (1954-1955) and between 2008-2013. The later UK viruses fell into three distinct lineages indicative of a long period of separation and independent evolution. Although rates of evolutionary change were almost identical to those previously described for MYXV in Australia and strongly clock-like, genome evolution in the UK and Australia showed little convergence. The phenotypes of eight UK viruses from three lineages were characterized in laboratory rabbits and compared to the progenitor (release) Lausanne strain. Inferred virulence ranged from highly virulent (grade 1) to highly attenuated (grade 5). Two broad disease types were seen: cutaneous nodular myxomatosis characterized by multiple raised secondary cutaneous lesions, or an amyxomatous phenotype with few or no secondary lesions. A novel clinical outcome was acute death with pulmonary oedema and haemorrhage, often associated with bacteria in many tissues but an absence of inflammatory cells. Notably, reading frame disruptions in genes defined as essential for virulence in the progenitor Lausanne strain were compatible with the acquisition of high virulence. Combined, these data support a model of ongoing host-pathogen co-evolution in which multiple genetic pathways can produce successful outcomes in the field that involve both different virulence grades and disease phenotypes, with alterations in tissue tropism and disease mechanisms.

Kinetic Coupling of Water Splitting and Photoreforming on SrTiO 3 -Based Photocatalysts

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanwald, Kai E.; Berto, Tobias F.; Jentys, Andreas

Coupling the anodic half-reactions of overall water splitting and oxygenate photoreforming (i.e., proton reduction and oxygenate oxidations) on Al-doped SrTiO3 decorated with a co-catalyst enables efficient photocatalytic H2 generation along with oxygenate conversion without accumulating undesired intermediates such as formaldehyde. The net H2-evolution rates result from the interplay between water oxidation, oxygenate oxidation, and the back-reaction of H2 and O2 to water. When the latter pathway is quantitatively suppressed (e.g., on RhCrOx co-catalyst or in excess of oxygenated hydrocarbons), the initial H2-evolution rates are independent of the oxygenate nature and concentration. This is a consequence of the reduction equivalents formore » H2-evolution provided by water oxidation compensating changes in the rates of oxygenate conversion. Thus, under conditions of suppressed back-reaction, water and oxygenate oxidations have equal quantum efficiencies. The selectivities to water and oxygenate oxidation depend on oxygenate nature and concentration. Transformations mediated by indirect hole transfer dominate as a result of the water oxidation at the anode and the associated intermediates generated in O2-evolution catalysis (e.g. ·OH, ·O and ·OOH). On the undecorated semiconductor, the O2 produced during overall water splitting is reductively activated to participate in glycerol oxidation without consuming evolved H2. Acknowledgements The authors would like to thank ESRF in Grenoble, France, for providing beam time at the ID26 station for XAFS experiments. K.E.S. gratefully acknowledges financial support by the Fond der Chemischen Industrie (FCI). J.A.L. and O.Y.G. acknowledge support for his contribution by the Laboratory Directed Research and Development Program at Pacific Northwest National Laboratory, a multi-program national laboratory operated by Battelle for the U.S. Department of Energy. The authors thank Xaver Hecht for BET measurements, Martin Neukamm for SEM and AAS measurements and Dr. Udishnu Sanyal for TEM imaging. Christine Schwarz is acknowledged for technical assistance in NMR experiments.« less

Regulation of gametogenesis and zoosporogenesis in Ulva linza (Chlorophyta): comparison with Ulva mutabilis and potential for laboratory culture.

PubMed

Vesty, Eleanor F; Kessler, Ralf W; Wichard, Thomas; Coates, Juliet C

2015-01-01

Green Ulvophyte macroalgae represent attractive model systems for understanding growth, development, and evolution. They are untapped resources for food, fuel, and high-value compounds, but can also form nuisance blooms. To fully analyze green seaweed morphogenesis, controlled laboratory-based culture of these organisms is required. To date, only a single Ulvophyte species, Ulva mutabilis Føyn, has been manipulated to complete its whole life cycle in laboratory culture and to grow continuously under axenic conditions. Such cultures are essential to address multiple key questions in Ulva development and in algal-bacterial interactions. Here we show that another Ulva species, U. linza, with a broad geographical distribution, has the potential to be grown in axenic culture similarly to U. mutabilis. U. linza can be reliably induced to sporulate (form gametes and zoospores) in the laboratory, by cutting the relevant thallus tissue into small pieces and removing extracellular inhibitors (sporulation and swarming inhibitors). The germ cells work as an ideal feed stock for standardized algae cultures. The requirement of U. linza for bacterial signals to induce its normal morphology (particularly of the rhizoids) appears to have a species-specific component. The axenic cultures of these two species pave the way for future comparative studies of algal-microbial interactions.

Regulation of gametogenesis and zoosporogenesis in Ulva linza (Chlorophyta): comparison with Ulva mutabilis and potential for laboratory culture

PubMed Central

Vesty, Eleanor F.; Kessler, Ralf W.; Wichard, Thomas; Coates, Juliet C.

2015-01-01

Green Ulvophyte macroalgae represent attractive model systems for understanding growth, development, and evolution. They are untapped resources for food, fuel, and high-value compounds, but can also form nuisance blooms. To fully analyze green seaweed morphogenesis, controlled laboratory-based culture of these organisms is required. To date, only a single Ulvophyte species, Ulva mutabilis Føyn, has been manipulated to complete its whole life cycle in laboratory culture and to grow continuously under axenic conditions. Such cultures are essential to address multiple key questions in Ulva development and in algal–bacterial interactions. Here we show that another Ulva species, U. linza, with a broad geographical distribution, has the potential to be grown in axenic culture similarly to U. mutabilis. U. linza can be reliably induced to sporulate (form gametes and zoospores) in the laboratory, by cutting the relevant thallus tissue into small pieces and removing extracellular inhibitors (sporulation and swarming inhibitors). The germ cells work as an ideal feed stock for standardized algae cultures. The requirement of U. linza for bacterial signals to induce its normal morphology (particularly of the rhizoids) appears to have a species-specific component. The axenic cultures of these two species pave the way for future comparative studies of algal–microbial interactions. PMID:25674100

Observing Clonal Dynamics across Spatiotemporal Axes: A Prelude to Quantitative Fitness Models for Cancer.

PubMed

McPherson, Andrew W; Chan, Fong Chun; Shah, Sohrab P

2018-02-01

The ability to accurately model evolutionary dynamics in cancer would allow for prediction of progression and response to therapy. As a prelude to quantitative understanding of evolutionary dynamics, researchers must gather observations of in vivo tumor evolution. High-throughput genome sequencing now provides the means to profile the mutational content of evolving tumor clones from patient biopsies. Together with the development of models of tumor evolution, reconstructing evolutionary histories of individual tumors generates hypotheses about the dynamics of evolution that produced the observed clones. In this review, we provide a brief overview of the concepts involved in predicting evolutionary histories, and provide a workflow based on bulk and targeted-genome sequencing. We then describe the application of this workflow to time series data obtained for transformed and progressed follicular lymphomas (FL), and contrast the observed evolutionary dynamics between these two subtypes. We next describe results from a spatial sampling study of high-grade serous (HGS) ovarian cancer, propose mechanisms of disease spread based on the observed clonal mixtures, and provide examples of diversification through subclonal acquisition of driver mutations and convergent evolution. Finally, we state implications of the techniques discussed in this review as a necessary but insufficient step on the path to predictive modelling of disease dynamics. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

The VASIMR[registered trademark] VF-200-1 ISS Experiment as a Laboratory for Astrophysics

NASA Technical Reports Server (NTRS)

Glover Tim W.; Squire, Jared P.; Longmier, Benjamin; Cassady, Leonard; Ilin, Andrew; Carter, Mark; Olsen, Chris S.; McCaskill, Greg; Diaz, Franklin Chang; Girimaji, Sharath;

Transitioning the California Energy Commission Eligible Equipment List to a National Platform

DOE Office of Scientific and Technical Information (OSTI.GOV)

Truitt, Sarah; Nobler, Erin; Krasko, Vitaliy

The Energy Commission called on the National Renewable Energy Laboratory's (NREL)'s Solar Technical Assistance Team to explore various pathways for supporting continued evolution of the list. NREL staff utilized the Database of State Incentives for Renewables and Efficiency (DSIRE), California Solar Initiative (CSI) data, and information from in-depth interviews to better understand the impact of a lack of an updated list and suggest potential solutions. A total of 18 people from state energy offices, rebate program administrators, utilities, national testing laboratories, private companies, nonprofit organizations, and the federal government were interviewed between July and September 2013. CSI data were analyzedmore » to illustrate the monetary benefits of the algorithm behind calculating performance of PV modules included on the list. The primary objectives of this study are to: 1) Determine the impact of not maintaining the list, and 2) Explore alternatives to the State of California's maintenance of the list.« less

Laboratory Studies of Anomalous Entrainment in Cumulus Cloud Flows

NASA Astrophysics Data System (ADS)

Diwan, Sourabh S.; Narasimha, Roddam; Bhat, G. S.; Sreenivas, K. R.

2011-12-01

Entrainment in cumulus clouds has been a subject of investigation for the last sixty years, and continues to be a central issue in current research. The development of a laboratory facility that can simulate cumulus cloud evolution enables us to shed light on the problem. The apparatus for the purpose is based on a physical model of cloud flow as a plume with off-source diabatic heating that is dynamically similar to the effect of latent-heat release in natural clouds. We present a critical review of the experimental data so far obtained in such facilities on the variation of the entrainment coefficient in steady diabatic jets and plumes. Although there are some unexplained differences among different data sets, the dominant trend of the results compares favourably with recent numerical simulations on steady-state deep convection, and helps explain certain puzzles in the fluid dynamics of clouds.

The VASIMR® VF-200-1 ISS Experiment as a Laboratory for Astrophysics

NASA Astrophysics Data System (ADS)

Glover, T.; Squire, J. P.; Longmier, B. W.; Carter, M. D.; Ilin, A. V.; Cassady, L. D.; Olsen, C. S.; Chang Díaz, F.; McCaskill, G. E.; Bering, E. A.; Garrison, D.; Girimaji, S.; Araya, D.; Morin, L.; Shebalin, J. V.

2010-12-01

The VASIMR® Flight Experiment (VF-200-1) will be tested in space aboard the International Space Station (ISS) in about four years. It will consist of two 100 kW parallel plasma engines with opposite magnetic dipoles, resulting in a near zero-torque magnetic system. Electrical energy will come from ISS at low power level, be stored in batteries and used to fire the engine at 200 kW. The VF-200-1 project will provide a unique opportunity on the ISS National Laboratory for astrophysicists and space physicists to study the dynamic evolution of an expanding and reconnecting plasma loop. Here, we review the status of the project and discuss our current plans for computational modeling and in situ observation of a dynamic plasma loop on an experimental platform in low-Earth orbit. The VF-200-1 project is still in the early stages of development and we welcome new collaborators.

Dust Evolution in Protoplanetary Discs and the Formation of Planetesimals. What Have We Learned from Laboratory Experiments?

NASA Astrophysics Data System (ADS)

Blum, Jürgen

2018-03-01

After 25 years of laboratory research on protoplanetary dust agglomeration, a consistent picture of the various processes that involve colliding dust aggregates has emerged. Besides sticking, bouncing and fragmentation, other effects, like, e.g., erosion or mass transfer, have now been extensively studied. Coagulation simulations consistently show that μm-sized dust grains can grow to mm- to cm-sized aggregates before they encounter the bouncing barrier, whereas sub-μm-sized water-ice particles can directly grow to planetesimal sizes. For siliceous materials, other processes have to be responsible for turning the dust aggregates into planetesimals. In this article, these processes are discussed, the physical properties of the emerging dusty or icy planetesimals are presented and compared to empirical evidence from within and without the Solar System. In conclusion, the formation of planetesimals by a gravitational collapse of dust "pebbles" seems the most likely.

Controlled experiments of hillslope co-evolution at the Biosphere 2 Landscape Evolution Observatory: toward prediction of coupled hydrological, biogeochemical, and ecological change

NASA Astrophysics Data System (ADS)

Volkmann, T. H. M.; Sengupta, A.; Pangle, L.; Abramson, N.; Barron-Gafford, G.; Breshears, D. D.; Bugaj, A.; Chorover, J.; Dontsova, K.; Durcik, M.; Ferre, T. P. A.; Harman, C. J.; Hunt, E.; Huxman, T. E.; Kim, M.; Maier, R. M.; Matos, K.; Alves Meira Neto, A.; Meredith, L. K.; Monson, R. K.; Niu, G. Y.; Pelletier, J. D.; Rasmussen, C.; Ruiz, J.; Saleska, S. R.; Schaap, M. G.; Sibayan, M.; Tuller, M.; Van Haren, J. L. M.; Wang, Y.; Zeng, X.; Troch, P. A.

2017-12-01

Understanding the process interactions and feedbacks among water, microbes, plants, and porous geological media is crucial for improving predictions of the response of Earth's critical zone to future climatic conditions. However, the integrated co-evolution of landscapes under change is notoriously difficult to investigate. Laboratory studies are typically limited in spatial and temporal scale, while field studies lack observational density and control. To bridge the gap between controlled lab and uncontrolled field studies, the University of Arizona - Biosphere 2 built a macrocosm experiment of unprecedented scale: the Landscape Evolution Observatory (LEO). LEO consists of three replicated, 330-m2 hillslope landscapes inside a 5000-m2 environmentally controlled facility. The engineered landscapes contain 1-m depth of basaltic tephra ground to homogenous loamy sand that will undergo physical, chemical, and mineralogical changes over many years. Each landscape contains a dense sensor network capable of resolving water, carbon, and energy cycling processes at sub-meter to whole-landscape scale. Embedded sampling devices allow for quantification of biogeochemical processes, and facilitate the use of chemical tracers applied with the artificial rainfall. LEO is now fully operational and intensive forcing experiments have been launched. While operating the massive infrastructure poses significant challenges, LEO has demonstrated the capacity of tracking multi-scale matter and energy fluxes at a level of detail impossible in field experiments. Initial sensor, sampler, and restricted soil coring data are already providing insights into the tight linkages between water flow, weathering, and (micro-) biological community development during incipient landscape evolution. Over the years to come, these interacting processes are anticipated to drive the model systems to increasingly complex states, potentially perturbed by changes in climatic forcing. By intensively monitoring the evolutionary trajectory, integrating data with models, and fostering community-wide collaborations, we envision that emergent landscape structures and functions can be linked and significant progress can be made toward predicting the coupled hydro-biogeochemical and ecological responses to global change.

Materials science and engineering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lesuer, D.R.

1997-02-01

During FY-96, work within the Materials Science and Engineering Thrust Area was focused on material modeling. Our motivation for this work is to develop the capability to study the structural response of materials as well as material processing. These capabilities have been applied to a broad range of problems, in support of many programs at Lawrence Livermore National Laboratory. These studies are described in (1) Strength and Fracture Toughness of Material Interfaces; (2) Damage Evolution in Fiber Composite Materials; (3) Flashlamp Envelope Optical Properties and Failure Analysis; (4) Synthesis and Processing of Nanocrystalline Hydroxyapatite; and (5) Room Temperature Creep Compliancemore » of Bulk Kel-E.« less

Genomics of Escherichia and Shigella

NASA Astrophysics Data System (ADS)

Perna, Nicole T.

The laboratory workhorse Escherichia coli K-12 is among the most intensively studied living organisms on earth, and this single strain serves as the model system behind much of our understanding of prokaryotic molecular biology. Dense genome sequencing and recent insightful comparative analyses are making the species E. coli, as a whole, an emerging system for studying prokaryotic population genetics and the relationship between system-scale, or genome-scale, molecular evolution and complex traits like host range and pathogenic potential. Genomic perspective has revealed a coherent but dynamic species united by intraspecific gene flow via homologous lateral or horizontal transfer and differentiated by content flux mediated by acquisition of DNA segments from interspecies transfers.

EVOLUTION OF AN ANALYTICAL METHOD FOR HALOGENATED FURANONES IN DRINKING WATER

EPA Science Inventory

A unified method of detection for seven halogenated furanones present in drinking waters at the ng/L level has been developed. The use of GC/ECD makes this method amenable to manyenvironmental laboratories and water treatment plants in the United States. Detection limits observe...

EML pulse ionization chamber systems for /sup 222/Rn measurements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisenne, I M; Keller, H W

1985-03-01

Radon measurements have been performed with pulse ionization chambers at the Environmental Measurements Laboratory (EML) for over 35 years. This report describes the evolution of radon measurement systems, with emphasis on the continuous quality control efforts at EML. 38 refs., 3 figs., 3 tabs.

VICI (Venus In Situ Composition Investigations): The Next Step in Understanding Venus Climate Evolution

NASA Astrophysics Data System (ADS)

Glaze, L. S.; Garvin, J. B.

2017-12-01

Venus provides a natural laboratory to explore an example of terrestrial planet evolution that may be cosmically ubiquitous. By better understanding the composition of the Venus atmosphere and surface, we can better constrain the efficiency of the Venusian greenhouse. VICI is a proposed NASA New Frontiers mission that delivers two landers to Venus on two separate Venus fly-bys. Following six orbital remote sensing missions to Venus (since 1978), VICI would be the first mission to land on the Venus surface since 1985, and the first U.S. mission to enter the Venus atmosphere in 49 years. The four major VICI science objectives are: Atmospheric origin and evolution: Understand the origin of the Venus atmosphere, how it has evolved, including how recently Venus lost its oceans, and how and why it is different from the atmospheres of Earth and Mars, through in situ measurements of key noble gases, nitrogen, and hydrogen. Atmospheric composition and structure: Reveal the unknown chemical processes and structure in Venus' deepest atmosphere that dominate the current climate through two comprehensive, in situ vertical profiles. Surface properties and geologic evolution: For the first time ever, explore the tessera from the surface, specifically to test hypotheses of ancient content-building cycles, erosion, and links to past climates using multi-point mineralogy, elemental chemistry, imaging and topography. Surface-atmosphere interactions: Characterize Venus' surface weathering environment and provide insight into the sulfur cycle at the surface-atmosphere interface by integrating rich atmospheric composition and structure datasets with imaging, surface mineralogy, and elemental rock composition. VICI is designed to study Venus' climate history through detailed atmospheric composition measurements not possible on earlier missions. In addition, VICI images the tessera surface during descent enabling detailed topography to be generated. Finally, VICI makes multiple elemental chemistry measurements, including depth profiles through the weathering rind and subsurface, and the first ever direct mineralogy measurements on the Venus surface. VICI's payloads build on the success of the Mars Science Laboratory (MSL) by carrying the same instrumentation that has delivered high-impact science results on Mars.

A second inheritance system: the extension of biology through culture.

PubMed

Whiten, Andrew

2017-10-06

By the mid-twentieth century (thus following the 'Modern Synthesis' in evolutionary biology), the behavioural sciences offered only the sketchy beginnings of a scientific literature documenting evidence for cultural inheritance in animals-the transmission of traditional behaviours via learning from others (social learning). By contrast, recent decades have seen a massive growth in the documentation of such cultural phenomena, driven by long-term field studies and complementary laboratory experiments. Here, I review the burgeoning scope of discoveries in this field, which increasingly suggest that this 'second inheritance system', built on the shoulders of the primary genetic inheritance system, occurs widely among vertebrates and possibly in invertebrates too. Its novel characteristics suggest significant implications for our understanding of evolutionary biology. I assess the extent to which this second system extends the scope of evolution, both by echoing principal properties of the primary, organic evolutionary system, and going beyond it in significant ways. This is well established in human cultural evolution; here, I address animal cultures more generally. The further major, and related, question concerns the extent to which the consequences of widespread animal cultural transmission interact with the primary, genetically based inheritance systems, shaping organic evolution.

Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus

PubMed Central

Schaefke, Bernhard; Wang, Tzi-Yuan; Wang, Chuen-Yi; Li, Wen-Hsiung

2015-01-01

Gene expression evolution occurs through changes in cis- or trans-regulatory elements or both. Interactions between transcription factors (TFs) and their binding sites (TFBSs) constitute one of the most important points where these two regulatory components intersect. In this study, we investigated the evolution of TFBSs in the promoter regions of different Saccharomyces strains and species. We divided the promoter of a gene into the proximal region and the distal region, which are defined, respectively, as the 200-bp region upstream of the transcription starting site and as the 200-bp region upstream of the proximal region. We found that the predicted TFBSs in the proximal promoter regions tend to be evolutionarily more conserved than those in the distal promoter regions. Additionally, Saccharomyces cerevisiae strains used in the fermentation of alcoholic drinks have experienced more TFBS losses than gains compared with strains from other environments (wild strains, laboratory strains, and clinical strains). We also showed that differences in TFBSs correlate with the cis component of gene expression evolution between species (comparing S. cerevisiae and its sister species Saccharomyces paradoxus) and within species (comparing two closely related S. cerevisiae strains). PMID:26220934

The evolution of passive rifting: contributions from field and laboratory studies to the interpretation of modelling results

NASA Astrophysics Data System (ADS)

Piccardo, Giovanni; Ranalli, Giorgio

2015-04-01

Direct field/laboratory, structural/petrologic investigations of mantle lithosphere from orogenic peridotites in Alpine-Apennine ophiolites provide significant constraints to the rift evolution of the Jurassic Ligurian Tethys ocean (Piccardo et al., 2014, and references therein). These studies have shown that continental extension and passive rifting were characterized by an important syn-rift "hidden" magmatic event, pre-dating continental break-up and sea-floor spreading. Occurrence of km-scale bodies of reactive spinel-harzburgites and impregnated plagioclase-peridotites, formed by melt/peridotite interaction, and the lack of any extrusive counterpart, show that the percolating magmas remained stored inside the mantle lithosphere. Petrologic-geochemical data/modelling and mineral Sm/Nd age constraints evidence that the syn-rift melt infiltration and reactive porous-flow percolation through the lithosphere were induced by MORB-type parental liquids formed by decompression melting of the passively upwelling asthenosphere. Melt thermal advection through, and melt stagnation within the lithosphere, heated the mantle column to temperatures close to the dry peridotite solidus ("asthenospherization" of mantle lithosphere). Experimental results of numerical/analogue modelling of the Ligurian rifting, based on field/laboratory constraints, show that: (1) porous flow percolation of asthenospheric melts resulted in considerable softening of the mantle lithosphere, decreasing total strength TLS from 10 to 1 TN m-1 as orders of magnitude (Ranalli et al. 2007), and (2) the formation of an axial lithospheric mantle column, with softened rheological characteristics (Weakened Lithospheric Mantle - WLM), induced necking instability in the extending lithosphere and subsequent active upwelling of the asthenosphere inside the WLM zone (Corti et al., 2007). Therefore, the syn-rift hidden magmatism (melt thermo-chemical-mechanical erosion, melt thermal advection and melt storage) caused important compositional and rheological modifications in the mantle lithosphere and played a fundamental role in the evolution of rifting, favouring, in particular, faster divergence of future continental margins and active upwelling of deeper/hotter asthenosphere. Active divergent forces probably changed the extension regime from passive to active rifting (as envisaged by Huismans et al., 2001). Accordingly, melt thermal advection and melt storage, and the rheological modifications induced in the mantle lithosphere, had a fundamental role in the evolution of the Ligurian rifting (Piccardo, 2014; Piccardo et al., 2014). Observations from the natural laboratory are pivotal when interpreting modelling results on the formation of rifted continental margins by extension of continental lithosphere leading to seafloor spreading. The rheological characteristics of the melt-modified mantle lithosphere can provide natural constraints for the interpretation of variously termed components ("oceanic lithosphere, Huismans & Beaumont, 2014; "oceanic and syn-rift lithospheric mantle", Whitmarsh & Manatschal, 2012), located in some models at non-oceanic, sub-continental settings, either below the extending continental crust or between the sub-continental lithosphere and the upwelling asthenosphere. Corti, G., Piccardo, G.B., Ranalli, G., et al., 2007. J. Geodynamics, 43, 465-483. Huismans, R.S., Beaumont, C., 2014. EPSL, 407, 148-162. Huismans, R.S., Podladchikov, Y.Y., Cloetingh, S., 2001, J. Geophys. Res. 106(11), 271-291. Piccardo, G.B., 2014. Geol. Soc. London, Spec. Publ., online 413, http://dx.doi.org/10.1144/SP413.7. Piccardo, G.B., et al., 2014. Earth-Science Reviews, http://dx.doi.org/10.1016/j.earscirev.2014.07.002. Ranalli, G., Piccardo, G.B., Corona-Chavez, P., 2007. J. Geodynamics, 43, 450-464. Whitmarsh, R.B., Manatschal, G., 2012. Roberts & Bally (eds), http://eprints.soton.ac.uk/id/eprint/358832.

NUMERICAL MODELING OF THE COAGULATION AND POROSITY EVOLUTION OF DUST AGGREGATES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Okuzumi, Satoshi; Sakagami, Masa-aki; Tanaka, Hidekazu, E-mail: satoshi.okuzumi@ax2.ecs.kyoto-u.ac.j

2009-12-20

Porosity evolution of dust aggregates is crucial in understanding dust evolution in protoplanetary disks. In this study, we present useful tools to study the coagulation and porosity evolution of dust aggregates. First, we present a new numerical method for simulating dust coagulation and porosity evolution as an extension of the conventional Smoluchowski equation. This method follows the evolution of the mean porosity for each aggregate mass simultaneously with the evolution of the mass distribution function. This method reproduces the results of previous Monte Carlo simulations with much less computational expense. Second, we propose a new collision model for porous dustmore » aggregates on the basis of our N-body experiments on aggregate collisions. As the first step, we focus on 'hit-and-stick' collisions, which involve neither compression nor fragmentation of aggregates. We first obtain empirical data on porosity changes between the classical limits of ballistic cluster-cluster and particle-cluster aggregation. Using the data, we construct a recipe for the porosity change due to general hit-and-stick collisions as well as formulae for the aerodynamical and collisional cross sections. Our collision model is thus more realistic than a previous model of Ormel et al. based on the classical aggregation limits only. Simple coagulation simulations using the extended Smoluchowski method show that our collision model explains the fractal dimensions of porous aggregates observed in a full N-body simulation and a laboratory experiment. By contrast, similar simulations using the collision model of Ormel et al. result in much less porous aggregates, meaning that this model underestimates the porosity increase upon unequal-sized collisions. Besides, we discover that aggregates at the high-mass end of the distribution can have a considerably small aerodynamical cross section per unit mass compared with aggregates of lower masses. This occurs when aggregates drift under uniform acceleration (e.g., gravity) and their collision is induced by the difference in their terminal velocities. We point out an important implication of this discovery for dust growth in protoplanetary disks.« less

Moving up the automation S-curve: The role of the laboratory automation support function in successful pharmaceutical R&D

PubMed Central

Maddux, Randy J.

1995-01-01

The political and economic climate that exists today is a challenging one for the pharmaceutical industry. To effectively compete in today's marketplace, companies must discover and develop truly innovative medicines. The R&D organizations within these companies are under increasing pressure to hold down costs while accomplishing this mission. In this environment of level head count and operating budgets, it is imperative that laboratory management uses resources in the most effective, efficient ways possible. Investment in laboratory automation is a proven tool for doing just that. This paper looks at the strategy and tactics behind the formation and evolution of a central automation/laboratory technology support function at the Glaxo Research Institute. Staffing of the function is explained, along with operating strategy and alignment with the scientific client base. Using the S-curve model of technological progress, both the realized and potential impact on successful R&D automation and laboratory technology development are assessed. PMID:18925012

From Technical Assistants to Critical Thinkers: The Journey to World War II.

PubMed

Butina, Michelle; Leibach, Elizabeth Kenimer

2014-01-01

A review of professional literature was conducted to examine the history of the education of medical laboratory practitioners. This comprehensive review included historical educational milestones from the birth of medical technology to the advent of World War II. During this time period standards were developed by clinical pathologists for laboratory personnel and training programs. In addition, a formal educational model began to form and by the 1940's two years of college was required for matriculation into a medical technology program. Intertwined within the educational milestones are imprints of the evolution of critical thinking requirements and skills within the profession. For the first laboratory practitioners, critical thinking was not developed, discussed, or encouraged as duties were primarily repetitive promoting psychomotor skills.

Three-dimensional printing physiology laboratory technology.

PubMed

Sulkin, Matthew S; Widder, Emily; Shao, Connie; Holzem, Katherine M; Gloschat, Christopher; Gutbrod, Sarah R; Efimov, Igor R

2013-12-01

Since its inception in 19th-century Germany, the physiology laboratory has been a complex and expensive research enterprise involving experts in various fields of science and engineering. Physiology research has been critically dependent on cutting-edge technological support of mechanical, electrical, optical, and more recently computer engineers. Evolution of modern experimental equipment is constrained by lack of direct communication between the physiological community and industry producing this equipment. Fortunately, recent advances in open source technologies, including three-dimensional printing, open source hardware and software, present an exciting opportunity to bring the design and development of research instrumentation to the end user, i.e., life scientists. Here we provide an overview on how to develop customized, cost-effective experimental equipment for physiology laboratories.

Laboratory Astrophysics White Paper: Summary of Laboratory Astrophysics Needs

NASA Technical Reports Server (NTRS)

2002-01-01

The NASA Laboratory Astrophysics Workshop (NASA LAW) met at NASA Ames Research Center from 1-3 May 2002 to assess the role that laboratory astrophysics plays in the optimization of NASA missions, both at the science conception level and at the science return level. Space missions provide understanding of fundamental questions regarding the origin and evolution of galaxies, stars, and planetary systems. In all of these areas the interpretation of results from NASA's space missions relies crucially upon data obtained from the laboratory. We stress that Laboratory Astrophysics is important not only in the interpretation of data, but also in the design and planning of future missions. We recognize a symbiosis between missions to explore the universe and the underlying basic data needed to interpret the data from those missions. In the following we provide a summary of the consensus results from our Workshop, starting with general programmatic findings and followed by a list of more specific scientific areas that need attention. We stress that this is a 'living document' and that these lists are subject to change as new missions or new areas of research rise to the fore.

POCT PT INR - Is it adequate for patient care? A comparison of the Roche Coaguchek XS vs. Stago Star vs. Siemens BCS in patients routinely seen in an anticoagulation clinic.

PubMed

Baker, Wendy S; Albright, Kathleen J; Berman, Megan; Spratt, Heidi; Mann, Peggy A; Unabia, Jaime; Petersen, John R

2017-09-01

In this study we examined the difference in patient INR values as measured by the POCT CoaguChek XS device and central laboratory Stago Evolution and Siemens BCS XP analyzers. This study composed of 100 warfarin therapy patients and 20 coagulation normal subjects, showed that the difference between the POCT and clinical laboratory values increased with increasing INR and was exacerbated by the use of different thromboplastin reagents by the POCT and central lab. The CoaguChek XS and on-site Stago analyzers which used human recombinant (ISI=1.01) and rabbit brain thromboplastin (ISI=1.25), respectively, showed reasonable agreement for INR<3.0 (k=0.62) but significant difference for INR≥3.0 (k=0.10). In contrast, the CoaguChek XS and Siemens BCS XP, which both employed human recombinant thromboplastin (BCS ISI=1.02), showed greater agreement for the complete range INR values (INR<3.0 k=0.84; INR≥3.0 k=0.70). ECAA Poller calibrant data showed the automated instruments were performing as expected, indicating that ISI calibrations were correct but insufficient to standardize the INR values for the different thromboplastin methods across the full range of measured INRs. Central lab verification of POCT INR>5.0 with the Stago Evolution prevented adverse treatment events for the warfarin therapy patients in the six months preceding and following this investigation. Copyright © 2017 Elsevier B.V. All rights reserved.

The evolution of automation and robotics in manned spaceflight

NASA Technical Reports Server (NTRS)

Moser, T. L.; Erickson, J. D.

1986-01-01

The evolution of automation on all manned spacecraft including the Space Shuttle is reviewed, and a concept for increasing automation and robotics from the current Shuttle Remote Manipulator System (RMS) to an autonomous system is presented. The requirements for robotic elements are identified for various functions on the Space Station, including extravehicular functions and functions within laboratory and habitation modules which expand man's capacity in space and allow selected teleoperation from the ground. The initial Space Station will employ a telerobot and necessary knowledge based systems as an advisory to the crew on monitoring, fault diagnosis, and short term planning and scheduling.

Evolution paths for advanced automation

NASA Technical Reports Server (NTRS)

Healey, Kathleen J.

1990-01-01

As Space Station Freedom (SSF) evolves, increased automation and autonomy will be required to meet Space Station Freedom Program (SSFP) objectives. As a precursor to the use of advanced automation within the SSFP, especially if it is to be used on SSF (e.g., to automate the operation of the flight systems), the underlying technologies will need to be elevated to a high level of readiness to ensure safe and effective operations. Ground facilities supporting the development of these flight systems -- from research and development laboratories through formal hardware and software development environments -- will be responsible for achieving these levels of technology readiness. These facilities will need to evolve support the general evolution of the SSFP. This evolution will include support for increasing the use of advanced automation. The SSF Advanced Development Program has funded a study to define evolution paths for advanced automaton within the SSFP's ground-based facilities which will enable, promote, and accelerate the appropriate use of advanced automation on-board SSF. The current capability of the test beds and facilities, such as the Software Support Environment, with regard to advanced automation, has been assessed and their desired evolutionary capabilities have been defined. Plans and guidelines for achieving this necessary capability have been constructed. The approach taken has combined indepth interviews of test beds personnel at all SSF Work Package centers with awareness of relevant state-of-the-art technology and technology insertion methodologies. Key recommendations from the study include advocating a NASA-wide task force for advanced automation, and the creation of software prototype transition environments to facilitate the incorporation of advanced automation in the SSFP.

Physical modeling of the formation and evolution of seismically active fault zones

USGS Publications Warehouse

Ponomarev, A.V.; Zavyalov, A.D.; Smirnov, V.B.; Lockner, D.A.

1997-01-01

Acoustic emission (AE) in rocks is studied as a model of natural seismicity. A special technique for rock loading has been used to help study the processes that control the development of AE during brittle deformation. This technique allows us to extend to hours fault growth which would normally occur very rapidly. In this way, the period of most intense interaction of acoustic events can be studied in detail. Characteristics of the acoustic regime (AR) include the Gutenberg-Richter b-value, spatial distribution of hypocenters with characteristic fractal (correlation) dimension d, Hurst exponent H, and crack concentration parameter Pc. The fractal structure of AR changes with the onset of the drop in differential stress during sample deformation. The change results from the active interaction of microcracks. This transition of the spatial distribution of AE hypocenters is accompanied by a corresponding change in the temporal correlation of events and in the distribution of event amplitudes as signified by a decrease of b-value. The characteristic structure that develops in the low-energy background AE is similar to the sequence of the strongest microfracture events. When the AR fractal structure develops, the variations of d and b are synchronous and d = 3b. This relation which occurs once the fractal structure is formed only holds for average values of d and b. Time variations of d and b are anticorrelated. The degree of temporal correlation of AR has time variations that are similar to d and b variations. The observed variations in laboratory AE experiments are compared with natural seismicity parameters. The close correspondence between laboratory-scale observations and naturally occurring seismicity suggests a possible new approach for understanding the evolution of complex seismicity patterns in nature. ?? 1997 Elsevier Science B.V. All rights reserved.

Investigation of Yersinia pestis laboratory adaptation through a combined genomics and proteomics approach

DOE PAGES

Leiser, Owen P.; Merkley, Eric D.; Clowers, Brian H.; ...

2015-11-24

Here, the bacterial pathogen Yersinia pestis, the cause of plague in humans and animals, normally has a sylvatic lifestyle, cycling between fleas and mammals. In contrast, laboratory-grown Y. pestis experiences a more constant environment and conditions that it would not normally encounter. The transition from the natural environment to the laboratory results in a vastly different set of selective pressures, and represents what could be considered domestication. Understanding the kinds of adaptations Y. pestis undergoes as it becomes domesticated will contribute to understanding the basic biology of this important pathogen. In this study, we performed a Parallel Serial Passage Experimentmore » (PSPE) to explore the mechanisms by which Y. pestis adapts to laboratory conditions, hypothesizing that cells would undergo significant changes in virulence and nutrient acquisition systems. Two wild strains were serially passaged in 12 independent populations each for ~750 generations, after which each population was analyzed using whole-genome sequencing. We observed considerable parallel evolution in the endpoint populations, detecting multiple independent mutations in ail, pepA, and zwf, suggesting that specific selective pressures are shaping evolutionary responses. Complementary LC-MS-based proteomic data provide physiological context to the observed mutations, and reveal regulatory changes not necessarily associated with specific mutations, including changes in amino acid metabolism, envelope biogenesis, iron storage and acquisition, and a type VI secretion system. Proteomic data support hypotheses generated by genomic data in addition to suggesting future mechanistic studies, indicating that future whole-genome sequencing studies be designed to leverage proteomics as a critical complement.« less

Investigation of Yersinia pestis laboratory adaptation through a combined genomics and proteomics approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leiser, Owen P.; Merkley, Eric D.; Clowers, Brian H.

Here, the bacterial pathogen Yersinia pestis, the cause of plague in humans and animals, normally has a sylvatic lifestyle, cycling between fleas and mammals. In contrast, laboratory-grown Y. pestis experiences a more constant environment and conditions that it would not normally encounter. The transition from the natural environment to the laboratory results in a vastly different set of selective pressures, and represents what could be considered domestication. Understanding the kinds of adaptations Y. pestis undergoes as it becomes domesticated will contribute to understanding the basic biology of this important pathogen. In this study, we performed a Parallel Serial Passage Experimentmore » (PSPE) to explore the mechanisms by which Y. pestis adapts to laboratory conditions, hypothesizing that cells would undergo significant changes in virulence and nutrient acquisition systems. Two wild strains were serially passaged in 12 independent populations each for ~750 generations, after which each population was analyzed using whole-genome sequencing. We observed considerable parallel evolution in the endpoint populations, detecting multiple independent mutations in ail, pepA, and zwf, suggesting that specific selective pressures are shaping evolutionary responses. Complementary LC-MS-based proteomic data provide physiological context to the observed mutations, and reveal regulatory changes not necessarily associated with specific mutations, including changes in amino acid metabolism, envelope biogenesis, iron storage and acquisition, and a type VI secretion system. Proteomic data support hypotheses generated by genomic data in addition to suggesting future mechanistic studies, indicating that future whole-genome sequencing studies be designed to leverage proteomics as a critical complement.« less

Mid- and far-infrared spectroscopic studies of the influence of temperature, ultraviolet photolysis and ion irradiation on cosmic-type ices.

PubMed

Moore, M H; Hudson, R L; Gerakines, P A

2001-03-15

Infrared (IR) studies of laboratory ices can provide information on the evolution of cosmic-type ices as a function of different simulated space environments involving thermal, ultraviolet (UV), or ion processing. Laboratory radiation experiments can lead to the formation of complex organic molecules. However, because of our lack of knowledge about UV photon and ion fluxes, and exposure lifetimes, it is not certain how well our simulations represent space conditions. Appropriate laboratory experiments are also limited by the absence of knowledge about the composition, density, and temperature of ices in different regions of space. Our current understanding of expected doses due to UV photons and cosmic rays is summarized here, along with an inventory of condensed-phase molecules identified on outer solar system surfaces, comets and interstellar grains. Far-IR spectra of thermally cycled H2O are discussed since these results reflect the dramatic difference between the amorphous and crystalline phases of H2O ice, the most dominant condensed-phase molecule in cosmic ices. A comparison of mid-IR spectra of products in proton-irradiated and UV-photolyzed ices shows that few differences are observed for these two forms of processing for the simple binary mixtures studied to date. IR identification of radiation products and experiments to determine production rates of new molecules in ices during processing are discussed. A new technique for measuring intrinsic IR band strengths of several unstable molecules is presented. An example of our laboratory results applied to Europa observations is included.

The genome diversity and karyotype evolution of mammals

PubMed Central

2011-01-01

The past decade has witnessed an explosion of genome sequencing and mapping in evolutionary diverse species. While full genome sequencing of mammals is rapidly progressing, the ability to assemble and align orthologous whole chromosome regions from more than a few species is still not possible. The intense focus on building of comparative maps for companion (dog and cat), laboratory (mice and rat) and agricultural (cattle, pig, and horse) animals has traditionally been used as a means to understand the underlying basis of disease-related or economically important phenotypes. However, these maps also provide an unprecedented opportunity to use multispecies analysis as a tool for inferring karyotype evolution. Comparative chromosome painting and related techniques are now considered to be the most powerful approaches in comparative genome studies. Homologies can be identified with high accuracy using molecularly defined DNA probes for fluorescence in situ hybridization (FISH) on chromosomes of different species. Chromosome painting data are now available for members of nearly all mammalian orders. In most orders, there are species with rates of chromosome evolution that can be considered as 'default' rates. The number of rearrangements that have become fixed in evolutionary history seems comparatively low, bearing in mind the 180 million years of the mammalian radiation. Comparative chromosome maps record the history of karyotype changes that have occurred during evolution. The aim of this review is to provide an overview of these recent advances in our endeavor to decipher the karyotype evolution of mammals by integrating the published results together with some of our latest unpublished results. PMID:21992653

Molecular Phylogeny, Laboratory Rearing, and Karyotype of the Bombycid Moth, Trilocha varians

PubMed Central

Daimon, Takaaki; Yago, Masaya; Hsu, Yu-Feng; Fujii, Tsuguru; Nakajima, Yumiko; Kokusho, Ryuhei; Abe, Hiroaki; Katsuma, Susumu; Shimada, Toru

2012-01-01

This study describes the molecular phylogeny, laboratory rearing, and karyotype of a bombycid moth, Trilocha varians (F. Walker) (Lepidoptera: Bombycidae), which feeds on leaves of Ficus spp. (Rosales: Moraceae). The larvae of this species were collected in Taipei city, Taiwan, and the Ryukyu Archipelago (Ishigaki and Okinawa Islands, Japan). Molecular phylogenetic analyses revealed that T. varians belongs to the subfamily Bombycinae, thus showing a close relationship to the domesticated silkworm Bombyx mori (L.), a lepidopteran model insect. A laboratory method was developed for rearing T. varians and the time required for development from the embryo to adult was determined. From oviposition to adult emergence, the developmental zero was 10.47 °C and total effective temperature was 531.2 day—degrees, i.e., approximately 30 days for one generation when reared at 28 °C. The haploid of T. varians consisted of n = 26 chromosomes. In highly polyploid somatic nuclei, females showed a large heterochromatin body, indicating that the sex chromosome system in T. varians is WZ/ZZ (female/male). The results of the present study should facilitate the utilization of T. varians as a reference species for B. mori, thereby leading to a greater understanding of the ecology and evolution of bombycid moths. PMID:22963522

Hook, Line and Infection: A Guide to Culturing Parasites, Establishing Infections and Assessing Immune Responses in the Three-Spined Stickleback.

PubMed

Stewart, Alexander; Jackson, Joseph; Barber, Iain; Eizaguirre, Christophe; Paterson, Rachel; van West, Pieter; Williams, Chris; Cable, Joanne

2017-01-01

The three-spined stickleback (Gasterosteus aculeatus) is a model organism with an extremely well-characterized ecology, evolutionary history, behavioural repertoire and parasitology that is coupled with published genomic data. These small temperate zone fish therefore provide an ideal experimental system to study common diseases of coldwater fish, including those of aquacultural importance. However, detailed information on the culture of stickleback parasites, the establishment and maintenance of infections and the quantification of host responses is scattered between primary and grey literature resources, some of which is not readily accessible. Our aim is to lay out a framework of techniques based on our experience to inform new and established laboratories about culture techniques and recent advances in the field. Here, essential knowledge on the biology, capture and laboratory maintenance of sticklebacks, and their commonly studied parasites is drawn together, highlighting recent advances in our understanding of the associated immune responses. In compiling this guide on the maintenance of sticklebacks and a range of common, taxonomically diverse parasites in the laboratory, we aim to engage a broader interdisciplinary community to consider this highly tractable model when addressing pressing questions in evolution, infection and aquaculture. Copyright © 2017 Elsevier Ltd. All rights reserved.

Teaching Noncovalent Interactions Using Protein Molecular Evolution

ERIC Educational Resources Information Center

Fornasari, Maria Silvina; Parisi, Gustavo; Echave, Julian

2008-01-01

Noncovalent interactions and physicochemical properties of amino acids are important topics in biochemistry courses. Here, we present a computational laboratory where the capacity of each of the 20 amino acids to maintain different noncovalent interactions are used to investigate the stabilizing forces in a set of proteins coming from organisms…

The Biology of Food

ERIC Educational Resources Information Center

Bonner, J. Jose

2004-01-01

In this article, the author discusses "The Biology of Food" course. This course--a large lecture course with no laboratory section--is a mixture of kitchen chemistry, post-eating food metabolism, origins of different foods (from crop breeding to evolution), and ecological and environmental impacts of farming and harvesting practices. Nearly every…

Evolution & Phylogenetic Analysis: Classroom Activities for Investigating Molecular & Morphological Concepts

ERIC Educational Resources Information Center

Franklin, Wilfred A.

2010-01-01

In a flexible multisession laboratory, students investigate concepts of phylogenetic analysis at both the molecular and the morphological level. Students finish by conducting their own analysis on a collection of skeletons representing the major phyla of vertebrates, a collection of primate skulls, or a collection of hominid skulls.

The laboratory of the 1990s—Planning for total automation

PubMed Central

Brunner, Linda A.

1992-01-01

The analytical laboratory of the 1990s must be able to meet and accommodate the rapid evolution of modern-day technology. One such area is laboratory automation. Total automation may be seen as the coupling of computerized sample tracking, electronic documentation and data reduction with automated sample handling, preparation and analysis, resulting in a complete analytical procedure with minimal human involvement. Requirements may vary from one laboratory or facility to another, so the automation has to be flexible enough to cover a wide range of applications, and yet fit into specific niches depending on individual needs. Total automation must be planned for, well in advance, if the endeavour is to be a success. Space, laboratory layout, proper equipment, and the availability and access to necessary utilities must be taken into account. Adequate training and experience of the personnel working with the technology must also be ensured. In addition, responsibilities of installation, programming maintenance and operation have to be addressed. Proper time management and the efficient implementation and use of total automation are also crucial to successful operations. This paper provides insights into laboratory organization and requirements, as well as discussing the management issues that must be faced when automating laboratory procedures. PMID:18924925

Herschel and the Molecular Universe

NASA Technical Reports Server (NTRS)

Tielens, A. G. G. M.; Helmich, F. P.

2006-01-01

Over the next decade, space-based missions will open up the universe to high spatial and spectral resolution studies at infrared and submillimeter wavelengths. This will allow us to study, in much greater detail, the composition and the origin and evolution of molecules in space. Moreover, molecular transitions in these spectral ranges provide a sensitive probe of the dynamics and the physical and chemical conditions in a wide range of objects at scales ranging from budding planetary systems to galactic and extragalactic sizes. Hence, these missions provide us with the tools to study key astrophysical and astrochemical processes involved in the formation and evolution of planets, stars, and galaxies. These new missions can be expected to lead to the detection of many thousands of new spectral features. Identification, analysis and interpretation of these features in terms of the physical and chemical characteristics of the astronomical sources will require detailed astronomical modeling tools supported by laboratory measurements and theoretical studies of chemical reactions and collisional excitation rates on species of astrophysical relevance. These data will have to be made easily accessible to the scientific community through web-based data archives. In this paper, we will review the Herschel mission and its expected impact on our understanding of the molecular universe.

Temporal variation in antibiotic environments slows down resistance evolution in pathogenic Pseudomonas aeruginosa

PubMed Central

Roemhild, Roderich; Barbosa, Camilo; Beardmore, Robert E; Jansen, Gunther; Schulenburg, Hinrich

2015-01-01

Antibiotic resistance is a growing concern to public health. New treatment strategies may alleviate the situation by slowing down the evolution of resistance. Here, we evaluated sequential treatment protocols using two fully independent laboratory-controlled evolution experiments with the human pathogen Pseudomonas aeruginosa PA14 and two pairs of clinically relevant antibiotics (doripenem/ciprofloxacin and cefsulodin/gentamicin). Our results consistently show that the sequential application of two antibiotics decelerates resistance evolution relative to monotherapy. Sequential treatment enhanced population extinction although we applied antibiotics at sublethal dosage. In both experiments, we identified an order effect of the antibiotics used in the sequential protocol, leading to significant variation in the long-term efficacy of the tested protocols. These variations appear to be caused by asymmetric evolutionary constraints, whereby adaptation to one drug slowed down adaptation to the other drug, but not vice versa. An understanding of such asymmetric constraints may help future development of evolutionary robust treatments against infectious disease. PMID:26640520

Integration Of Heat Transfer Coefficient In Glass Forming Modeling With Special Interface Element

NASA Astrophysics Data System (ADS)

Moreau, P.; César de Sá, J.; Grégoire, S.; Lochegnies, D.

2007-05-01

Numerical modeling of the glass forming processes requires the accurate knowledge of the heat exchange between the glass and the forming tools. A laboratory testing is developed to determine the evolution of the heat transfer coefficient in different glass/mould contact conditions (contact pressure, temperature, lubrication…). In this paper, trials are performed to determine heat transfer coefficient evolutions in experimental conditions close to the industrial blow-and-blow process conditions. In parallel of this work, a special interface element is implemented in a commercial Finite Element code in order to deal with heat transfer between glass and mould for non-meshing meshes and evolutive contact. This special interface element, implemented by using user subroutines, permits to introduce the previous heat transfer coefficient evolutions in the numerical modelings at the glass/mould interface in function of the local temperatures, contact pressures, contact time and kind of lubrication. The blow-and-blow forming simulation of a perfume bottle is finally performed to assess the special interface element performance.

Convergent evolution and mimicry of protein linear motifs in host-pathogen interactions.

PubMed

Chemes, Lucía Beatriz; de Prat-Gay, Gonzalo; Sánchez, Ignacio Enrique

2015-06-01

Pathogen linear motif mimics are highly evolvable elements that facilitate rewiring of host protein interaction networks. Host linear motifs and pathogen mimics differ in sequence, leading to thermodynamic and structural differences in the resulting protein-protein interactions. Moreover, the functional output of a mimic depends on the motif and domain repertoire of the pathogen protein. Regulatory evolution mediated by linear motifs can be understood by measuring evolutionary rates, quantifying positive and negative selection and performing phylogenetic reconstructions of linear motif natural history. Convergent evolution of linear motif mimics is widespread among unrelated proteins from viral, prokaryotic and eukaryotic pathogens and can also take place within individual protein phylogenies. Statistics, biochemistry and laboratory models of infection link pathogen linear motifs to phenotypic traits such as tropism, virulence and oncogenicity. In vitro evolution experiments and analysis of natural sequences suggest that changes in linear motif composition underlie pathogen adaptation to a changing environment. Copyright © 2015 Elsevier Ltd. All rights reserved.

Laboratory Astrophysics White Paper

NASA Technical Reports Server (NTRS)

Brickhouse, Nancy; Federman, Steve; Kwong, Victor; Salama, Farid; Savin, Daniel; Stancil, Phillip; Weingartner, Joe; Ziurys, Lucy

2006-01-01

Laboratory astrophysics and complementary theoretical calculations are the foundations of astronomical and planetary research and will remain so for many generations to come. From the level of scientific conception to that of the scientific return, it is our understanding of the underlying processes that allows us to address fundamental questions regarding the origins and evolution of galaxies, stars, planetary systems, and life in the cosmos. In this regard, laboratory astrophysics is much like detector and instrument development at NASA and NSF; these efforts are necessary for the astronomical research being funded by the agencies. The NASA Laboratory Astrophysics Workshop met at the University of Nevada, Las Vegas (UNLV) from 14-16 February, 2006 to identify the current laboratory data needed to support existing and future NASA missions and programs in the Astrophysics Division of the Science Mission Directorate (SMD). Here we refer to both laboratory and theoretical work as laboratory astrophysics unless a distinction is necessary. The format for the Workshop involved invited talks by users of laboratory data, shorter contributed talks and poster presentations by both users and providers that highlighted exciting developments in laboratory astrophysics, and breakout sessions where users and providers discussed each others' needs and limitations. We also note that the members of the Scientific Organizing Committee are users as well as providers of laboratory data. As in previous workshops, the focus was on atomic, molecular, and solid state physics.

Key aspects of the biology of snail-killing Sciomyzidae flies.

PubMed

Murphy, William L; Knutson, Lloyd V; Chapman, Eric G; Mc Donnell, Rory J; Williams, Christopher D; Foote, Benjamin A; Vala, Jean-Claude

2012-01-01

The biology of snail-killing flies (Diptera: Sciomyzidae) has been studied intensively over the past half-century, especially over the past decade. Today, sciomyzids are biologically the best-known group of higher Diptera. The overarching research objectives are evaluation of sciomyzids as biocontrols of disease-carrying or agriculturally important snails and slugs and as a paradigm group for the study of the evolution of diverse feeding and associated behaviors in flies. We present reviews and analyses of some key features of particular scientific and societal interest, including behavioral and phenological groups; laboratory experimental studies on behavior and development; population biology, bioindicators, ecosystem service provision, and conservation; phylogenetics, molecular studies, and evolutionary biology; and biocontrol. Copyright © 2012 by Annual Reviews. All rights reserved.

Evolution of premating reproductive isolation among conspecific populations of the sea rock-pool beetle Ochthebius urbanelliae driven by reinforcing natural selection.

PubMed

Porretta, Daniele; Urbanelli, Sandra

2012-04-01

How natural selection might be involved in speciation remains a fundamental question in evolutionary biology. When two or more species co-occur in the same areas, natural selection may favor divergence in mating traits. By acting in sympatric but not allopatric populations, natural selection can also affect mate choice within species and ultimately initiate speciation among conspecific populations. Here, we address this potential effect in the sea rock-pool beetles Ochthebius quadricollis and O. urbanelliae. The two species, which inhabit the Mediterranean coasts, co-occurr syntopically in an area along the Italian Tyrrhenian coast and completed reproductive isolation by reinforcement. In this article, through mating trials under laboratory conditions between conspecific populations, we found in O. quadricollis no deviations from random mating. Conversely, in O. urbanelliae, we found a clear pattern of premating isolation between the reinforced populations sympatric with O. quadricollis and those nonreinforced allopatric. This pattern is consistent with the view that natural selection, which completed the reproductive isolation between the two species in sympatry, led incidentally also to partial premating reproductive isolation (I(PSI) estimator from 0.683 to 0.792) between conspecific populations of O. urbanelliae. This case study supports an until recently underappreciated role of natural selection resulting from species interactions in initiating speciation. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

Experimental study on the evolution of Peregrine breather with uniform-depth adverse currents

NASA Astrophysics Data System (ADS)

Liao, B.; Ma, Y.; Ma, X.; Dong, G.

2018-05-01

A series of laboratory experiments were performed to study the evolution of Peregrine breather (PB) in a wave flume in finite depth, and wave trains were initially generated in a region of quiescent water and then propagated into an adverse current region for which the current velocity strength gradually increased from zero to an approximately stable value. The PB is often considered as a prototype of oceanic freak waves that can focus wave energy into a single wave packet. In the experiment, the cases were selected with the relative water depths k0h (k0 is the wave number in quiescent water and h is the water depth) varying from 3.11 through 8.17, and the initial wave steepness k0a0 (a0 is the background wave amplitude) ranges between 0.065 and 0.120. The experimental results show the persistence of the breather evolution dynamics even in the presence of strong opposing currents. We have shown that the characteristic spectrum of the PB persists even on strong currents, thus making it a viable characteristic for prediction of freak waves. It was also found that the adverse currents tend to shift the focusing point upstream compared to the cases without currents. Furthermore, it was found that uniform-depth adverse currents can reduce the breather extension in time domain.

On the evolution of Atlantic Meridional Overturning Circulation Fingerprint and implications for decadal predictability in the North Atlantic

NASA Astrophysics Data System (ADS)

Zhang, Jinting; Zhang, Rong

2015-07-01

It has been suggested previously that the Atlantic Meridional Overturning Circulation (AMOC) anomaly associated with changes in the North Atlantic Deep Water formation propagates southward with an advection speed north of 34°N. In this study, using Geophysical Fluid Dynamics Laboratory Coupled Model version 2.1 (GFDL CM2.1), we show that this slow southward propagation of the AMOC anomaly is crucial for the evolution and the enhanced decadal predictability of the AMOC fingerprint—the leading mode of upper ocean heat content (UOHC) in the extratropical North Atlantic. A positive AMOC anomaly in northern high latitudes leads to a convergence/divergence of the Atlantic meridional heat transport (MHT) anomaly in the subpolar/Gulf Stream region, thus warming in the subpolar gyre (SPG) and cooling in the Gulf Stream region after several years. Recent decadal prediction studies successfully predicted the observed warm shift in the SPG in the mid-1990s. Our results here provide the physical mechanism for the enhanced decadal prediction skills in the SPG UOHC.

DELP Symposium: Tectonics of eastern Asia and western Pacific Continental Margin

NASA Astrophysics Data System (ADS)

Eastern Asia and the western Pacific make up a broad region of active plate tectonic interaction. The area is a natural laboratory for studying the processes involved in the origin and evolution of volcanic island arcs, marginal basins, accretionary prisims, oceanic trenches, accreted terranes, ophiolite emplacement, and intracontinental deformation. Many of our working concepts of plate tectonics and intraplate deformation were developed in this region, even though details of the geology and geophysics there must be considered of a reconnaissance nature.During the past few years researchers have accumulated a vast amount of new and detailed information and have developed a better understanding of the processes that have shaped the tectonic elements in this region. To bring together scientists from many disciplines and to present the wide range of new data and ideas that offer a broader perspective on the interrelations of geological, geochemical, geophysical and geodetic studies, the symposium Tectonics of Eastern Asia and Western Pacific Continental Margin was held December 13-16, 1988, at the Tokyo Institute of Technology in Japan, under the auspicies of DELP (Dynamics and Evolution of the Lithosphere Project).

The dwarf galaxy population of nearby galaxy clusters

NASA Astrophysics Data System (ADS)

Lisker, Thorsten; Wittmann, Carolin; Pak, Mina; Janz, Joachim; Bialas, Daniel; Peletier, Reynier; Grebel, Eva; Falcon Barroso, Jesus; Toloba, Elisa; Smakced Collaboration, Focus Collaboration

2015-01-01

The Fornax, Virgo, Ursa Major and Perseus galaxy clusters all have very different characteristics, in terms of their density, mass, and large-scale environment. We can regard these clusters as laboratories for studying environmental influence on galaxy evolution, using the sensitive low-mass galaxies as probes for external mechanisms. Here we report on recent and ongoing observational studies of the said clusters with imaging and spectroscopy, as well as on the interpretation of present-day cluster galaxy populations with the aid of cosmological simulations.Multicolor imaging data allow us to identify residual star formation in otherwise red early-type dwarf galaxies, which hold clues to the strength of gas stripping processes. Major-axis spectra and 2D kinematical maps provide insight regarding the amount of rotational support and how much dynamical heating a dwarf galaxy may have experienced. To this end, dedicated N-body simulations that follow the evolution of galaxies since early epochs reveal their path through parameter space, and can be compared to observations in order to understand the time-integrated effect of environmental influence.

Laboratory studies of monoterpene secondary organic aerosol formation and evolution

NASA Astrophysics Data System (ADS)

Thornton, J. A.; D'Ambro, E.; Zhao, Y.; Lee, B. H.; Pye, H. O. T.; Schobesberger, S.; Shilling, J.; Liu, J.

2017-12-01

We have conducted a series of chamber experiments to study the molecular composition and properties of secondary organic aerosol (SOA) formed from monoterpenes under a range of photochemical and dark conditions. We connect variations in the SOA mass yield to molecular composition and volatility, and use a detailed Master Chemical Mechanism (MCM) based chemical box model with dynamic gas-particle partitioning to examine the importance of various peroxy radical reaction mechanisms in setting the SOA yield and properties. We compare the volatility distribution predicted by the model to that inferred from isothermal room-temperature evaporation experiments using the FIGAERO-CIMS where SOA particles collected on a filter are allowed to evaporate under humidified pure nitrogen flow stream for up to 24 hours. We show that the combination of results requires prompt formation of low volatility SOA from predominantly gas-phase mechanisms, with important differences between monoterpenes (alpha-Pinene and delta-3-Carene) followed by slower non-radical particle phase chemistry that modulates both the chemical and physical properties of the SOA. Implications for the regional evolution of atmospheric monoterpene SOA are also discussed.

A review of laboratory and numerical modelling in volcanology

NASA Astrophysics Data System (ADS)

Kavanagh, Janine L.; Engwell, Samantha L.; Martin, Simon A.

2018-04-01

Modelling has been used in the study of volcanic systems for more than 100 years, building upon the approach first applied by Sir James Hall in 1815. Informed by observations of volcanological phenomena in nature, including eye-witness accounts of eruptions, geophysical or geodetic monitoring of active volcanoes, and geological analysis of ancient deposits, laboratory and numerical models have been used to describe and quantify volcanic and magmatic processes that span orders of magnitudes of time and space. We review the use of laboratory and numerical modelling in volcanological research, focussing on sub-surface and eruptive processes including the accretion and evolution of magma chambers, the propagation of sheet intrusions, the development of volcanic flows (lava flows, pyroclastic density currents, and lahars), volcanic plume formation, and ash dispersal. When first introduced into volcanology, laboratory experiments and numerical simulations marked a transition in approach from broadly qualitative to increasingly quantitative research. These methods are now widely used in volcanology to describe the physical and chemical behaviours that govern volcanic and magmatic systems. Creating simplified models of highly dynamical systems enables volcanologists to simulate and potentially predict the nature and impact of future eruptions. These tools have provided significant insights into many aspects of the volcanic plumbing system and eruptive processes. The largest scientific advances in volcanology have come from a multidisciplinary approach, applying developments in diverse fields such as engineering and computer science to study magmatic and volcanic phenomena. A global effort in the integration of laboratory and numerical volcano modelling is now required to tackle key problems in volcanology and points towards the importance of benchmarking exercises and the need for protocols to be developed so that models are routinely tested against real world data.

Laboratory Studies of Interstellar PAH Analogs

NASA Technical Reports Server (NTRS)

Salama, Farid; DeVincenzi, Donald (Technical Monitor)

2000-01-01

Polycyclic aromatic hydrocarbons (PAHs) are now considered to be an important and ubiquitous component of the organic material in space. PAHs are found in a large variety of extraterrestrial materials such as interplanetary dust particles (IDPs) and meteoritic materials. PAHs are also good candidates to account for the infrared emission bands (UIRs) and the diffuse interstellar optical absorption bands (DIBs) detected in various regions of the interstellar medium. The recent observations made with the Infrared Space Observatory (ISO) have confirmed the ubiquitous nature of the UIR bands and their carriers. PAHs are though to form through chemical reactions in the outflow from carbon-rich stars in a process similar to soot formation. Once injected in the interstellar medium, PAHs are further processed by the interstellar radiation field, interstellar shocks and energetic particles. A major, dedicated, laboratory effort has been undertaken over the past years to measure the physical and chemical characteristics of these complex molecules and their ions under experimental conditions that mimic the interstellar conditions. These measurements require collision-free conditions where the molecules and ions are cold and chemically isolated. The spectroscopy of PAHs under controlled conditions represents an essential diagnostic tool to study the evolution of extraterrestrial PAHs. The Astrochemistry Laboratory program will be discussed through its multiple aspects: objectives, approach and techniques adopted, adaptability to the nature of the problem(s), results and implications for astronomy as well as for molecular spectroscopy. A review of the data generated through laboratory simulations of space environments and the role these data have played in our current understanding of the properties of interstellar PAHs will be presented. The discussion will also introduce the newest generation of laboratory experiments that are currently being developed in order to provide a closer simulation of space environments and a better support to space missions.

Hydraulic Evolution of Karst Microfracture

NASA Astrophysics Data System (ADS)

Windom, L. M.; Dragila, M. I.; Weisbrod, N.

2017-12-01

Karst terrain comprises an astounding 25% of our planet's potable water resources, yet the evolution of these systems from micro-fracture to open channel is poorly understood. Focusing on the unsaturated portion of an evolving karst system, we present a conceptual model for the hydraulic evolution of micro-fractures into larger conduits. Tensional micro-fractures (< 1mm thick) under unsaturated conditions may be eroded by water flowing either as seepage films or as capillary rivulets. In addition to general erosion, the narrow width of capillary rivulets may etch the beginning of preferential paths within the tensional micro-fractures that will lead to tubular channels. Both fluid mechanisms, seepage and rivulets, were tested in the laboratory, and data of the resulting geochemical erosion rates are presented in the form of calcium dissolution rates measured by inductively coupled plasma atomic emission spectroscopy (ICP-OES).

Creep and slip: Seismic precursors to the Nuugaatsiaq landslide (Greenland)

NASA Astrophysics Data System (ADS)

Poli, Piero

2017-09-01

Precursory signals to material's failure are predicted by numerical models and observed in laboratory experiments or using field data. These precursory signals are a marker of slip acceleration on weak regions, such as crustal faults. Observation of these precursory signals of catastrophic natural events, such as earthquakes and landslides, is necessary for improving our knowledge about the physics of the nucleation process. Furthermore, observing such precursory signals may help to forecast these catastrophic events or reduce their hazard. I report here the observation of seismic precursors to the Nuugaatsiaq landslide in Greenland. Time evolution of the detected precursors implies that an aseismic slip event is taking place for hours before the landslide, with an exponential increase of slip velocity. Furthermore, time evolution of the precursory signals' amplitude sheds light on the evolution of the fault physics during the nucleation process.

Regolith evolution in the laboratory - Scaling dissimilar comminution experiments

NASA Technical Reports Server (NTRS)

Cintala, Mark J.; Horz, Friedrich

1990-01-01

Repeated impacts into fragmental targets simulating unconsolidated debris on planetary surfaces have provided empirical insight into the evolution of planetary regoliths. The techniques of dimensional analysis have been employed to quantify and examine the relationships between the more important variables in the evolution of these experimental regoliths. Application of this method to the results of 10 experimental series shows that the quantity of comminuted target mass is directly proportional to (1) the number of impacts, (2) the diameter of the projectile, (3) the mean size of the crystals, (4) the mean grain size of the evolving regolith, (5) the total target mass, (6) the impactor density, and (7) the ratio of the impact velocity to the velocity of sound in the target rock. The comminuted mass is inversely proportional to the density of the target rock and the sorting of the regolith.

Theoretical studies in isoelectric focusing. [mathematical modeling and computer simulation for biologicals purification process

NASA Technical Reports Server (NTRS)

Mosher, R. A.; Palusinski, O. A.; Bier, M.

1982-01-01

A mathematical model has been developed which describes the steady state in an isoelectric focusing (IEF) system with ampholytes or monovalent buffers. The model is based on the fundamental equations describing the component dissociation equilibria, mass transport due to diffusion and electromigration, electroneutrality, and the conservation of charge. The validity and usefulness of the model has been confirmed by using it to formulate buffer systems in actual laboratory experiments. The model has been recently extended to include the evolution of transient states not only in IEF but also in other modes of electrophoresis.

AK Sco: a tidally induced atmospheric dynamo in a pre-main sequence binary?

NASA Astrophysics Data System (ADS)

Gómez de Castro, A. I.

2009-02-01

AK Sco is a unique source: a 10-30 Myrs old pre-main sequence spectroscopic binary composed by two nearly equal F5 stars that at periastron are separated by barely eleven stellar radii so, the stellar magnetospheres fill the Roche lobe at periastron. The orbit is not yet circularized (e = 0.47) and very strong tides are expected. This makes of AK Sco, the ideal laboratory to study the effect of gravitational tides in the stellar magnetic field building up during pre-main sequence evolution. Evidence of this effect is reported in this contribution.

Extragalactic astronomy: The universe beyond our galaxy

NASA Technical Reports Server (NTRS)

Jacobs, K. C.

1976-01-01

This single-topic brochure is for high school physical science teachers to use in introducing students to extragalactic astronomy. The material is presented in three parts: the fundamental content of extragalactic astronomy; modern discoveries delineated in greater detail; and a summary of the earlier discussions within the structure of the Big-Bang Theory of evolution. Each of the three sections is followed by student exercises (activities, laboratory projects, and questions-and-answers). The unit close with a glossary which explains unfamilar terms used in the text and a collection of teacher aids (literature references and audiovisual materials for utilization in further study).

A mechanism for leader stepping

NASA Astrophysics Data System (ADS)

Ebert, U.; Carlson, B. E.; Koehn, C.

2013-12-01

The stepping of negative leaders is well observed, but not well understood. A major problem consists of the fact that the streamer corona is typically invisible within a thunderstorm, but determines the evolution of a leader. Motivated by recent observations of streamer and leader formation in the laboratory by T.M.P. Briels, S. Nijdam, P. Kochkin, A.P.J. van Deursen et al., by recent simulations of these processes by J. Teunissen, A. Sun et al., and by our theoretical understanding of the process, we suggest how laboratory phenomena can be extrapolated to lightning leaders to explain the stepping mechanism.

Hardening Doppler Global Velocimetry Systems for Large Wind Tunnel Applications

NASA Technical Reports Server (NTRS)

Meyers, James F.; Lee, Joseph W.; Fletcher, Mark T.; South, Bruce W.

2004-01-01

The development of Doppler Global Velocimetry from a laboratory curiosity to a wind tunnel instrumentation system is discussed. This development includes system advancements from a single velocity component to simultaneous three components, and from a steady state to instantaneous measurement. Improvements to system control and stability are discussed along with solutions to real world problems encountered in the wind tunnel. This on-going development program follows the cyclic evolution of understanding the physics of the technology, development of solutions, laboratory and wind tunnel testing, and reevaluation of the physics based on the test results.

US Army Research Laboratory power sources R and D programs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Christopher, H.A.; Gilman, S.; Hamlen, R.P.

1993-05-01

The development and application of new electronic technologies over the recent past has resulted in a major evolution of new electronic battlefield equipment. The need for lighter-weight and more cost effective power sources with higher power/energy density capability is critical to the successful development and deployment of these new, high performance battlefield devices. The current status and thrust of the Army Research Laboratory's (ARL's) battery and fuel cell R and D programs that support these new and emerging applications will be reviewed. Major technical barriers will be identified along with the corresponding proposed approaches to solving these anticipated problems.

Can Random Mutation Mimic Design?: A Guided Inquiry Laboratory for Undergraduate Students

PubMed Central

Kalinowski, Steven T.; Taper, Mark L.; Metz, Anneke M.

2006-01-01

Complex biological structures, such as the human eye, have been interpreted as evidence for a creator for over three centuries. This raises the question of whether random mutation can create such adaptations. In this article, we present an inquiry-based laboratory experiment that explores this question using paper airplanes as a model organism. The main task for students in this investigation is to figure out how to simulate paper airplane evolution (including reproduction, inheritance, mutation, and selection). In addition, the lab requires students to practice analytic thinking and to carefully delineate the implications of their results. PMID:16951065

GRAIL Mission Briefing

NASA Image and Video Library

2011-08-25

David Lehman, GRAIL project manager, NASA's Jet Propulsion Laboratory, Pasadena, Calif., speaks at a press conference about the upcoming launch to the moon of the Gravity Recovery and Interior Laboratory (GRAIL) mission, Thursday, Aug. 25, 2011 in Washington. GRAIL's primary science objectives are to determine the structure of the lunar interior, from crust to core, and to advance understanding of the thermal evolution of the moon. The mission will place two spacecraft into the same orbit around the moon which will gather information about the its gravitational field enabling scientists to create a high-resolution map. Photo Credit: (NASA/Carla Cioffi)

Impact structures in Africa: A review

PubMed Central

Reimold, Wolf Uwe; Koeberl, Christian

2014-01-01

More than 50 years of space and planetary exploration and concomitant studies of terrestrial impact structures have demonstrated that impact cratering has been a fundamental process – an essential part of planetary evolution – ever since the beginning of accretion and has played a major role in planetary evolution throughout the solar system and beyond. This not only pertains to the development of the planets but to evolution of life as well. The terrestrial impact record represents only a small fraction of the bombardment history that Earth experienced throughout its evolution. While remote sensing investigations of planetary surfaces provide essential information about surface evolution and surface processes, they do not provide the information required for understanding the ultra-high strain rate, high-pressure, and high-temperature impact process. Thus, hands-on investigations of rocks from terrestrial impact craters, shock experimentation for pressure and temperature calibration of impact-related deformation of rocks and minerals, as well as parameter studies pertaining to the physics and chemistry of cratering and ejecta formation and emplacement, and laboratory studies of impact-generated lithologies are mandatory tools. These, together with numerical modeling analysis of impact physics, form the backbone of impact cratering studies. Here, we review the current status of knowledge about impact cratering – and provide a detailed account of the African impact record, which has been expanded vastly since a first overview was published in 1994. No less than 19 confirmed impact structures, and one shatter cone occurrence without related impact crater are now known from Africa. In addition, a number of impact glass, tektite and spherule layer occurrences are known. The 49 sites with proposed, but not yet confirmed, possible impact structures contain at least a considerable number of structures that, from available information, hold the promise to be able to expand the African impact record drastically – provided the political conditions for safe ground-truthing will become available. The fact that 28 structures have also been shown to date NOT to be of impact origin further underpins the strong interest in impact in Africa. We hope that this review stimulates the education of students about impact cratering and the fundamental importance of this process for Earth – both for its biological and geological evolution. This work may provide a reference volume for those workers who would like to search for impact craters and their ejecta in Africa. PMID:27065753

Clinical pathologists and physician in France: which partnership and which future?

PubMed

Barrand, Lionel; Delabranche, Xavier

2017-08-01

Medical biology is a major area of medical specialization in French health care system. It is going through massive changes in public as in private sector since the 2010 Ballereau edict with the merging of laboratories and new quality standards based on accreditation. We have suggested that physicians had a negative feeling about the restructuring of medical biology in recent years. An electronic questionnaire has been sent to physicians so as to find out what they thought about the evolution of medical biology and to get suggestions to improve the taking care of the patient. Have answered 1364 residents and physicians from all specializations, all regions, practicing in public or private hospitals or in general practices. Doctors have on the whole a negative feeling about how medical biology has evolved in recent years thinking that it is moving towards industrialization with delay increasing. They are convinced that tests must be made on site. They remain satisfied with the quality of the tests and have a positive feeling about scientific evolutions and are in favor of a better clinical-biological cooperation. The study points out a lack of clarity concerning how private laboratories are organized and how they operate. A computer link between clinical pathologists and physicians to access results and a list of urgent medical examinations could be set up so as to have a more rapid access to results. Rapid diagnostic tests or delocalized biology could be used but doctors do not want these tests to replace the clinical pathologist.

3D-PTV around Operational Wind Turbines

NASA Astrophysics Data System (ADS)

Brownstein, Ian; Dabiri, John

2016-11-01

Laboratory studies and numerical simulations of wind turbines are typically constrained in how they can inform operational turbine behavior. Laboratory experiments are usually unable to match both pertinent parameters of full-scale wind turbines, the Reynolds number (Re) and tip speed ratio, using scaled-down models. Additionally, numerical simulations of the flow around wind turbines are constrained by the large domain size and high Re that need to be simulated. When these simulations are preformed, turbine geometry is typically simplified resulting in flow structures near the rotor not being well resolved. In order to bypass these limitations, a quantitative flow visualization method was developed to take in situ measurements of the flow around wind turbines at the Field Laboratory for Optimized Wind Energy (FLOWE) in Lancaster, CA. The apparatus constructed was able to seed an approximately 9m x 9m x 5m volume in the wake of the turbine using artificial snow. Quantitative measurements were obtained by tracking the evolution of the artificial snow using a four camera setup. The methodology for calibrating and collecting data, as well as preliminary results detailing the flow around a 2kW vertical-axis wind turbine (VAWT), will be presented.

Laboratory Formation of Fullerenes from PAHs: Top-down Interstellar Chemistry

NASA Astrophysics Data System (ADS)

Zhen, Junfeng; Castellanos, Pablo; Paardekooper, Daniel M.; Linnartz, Harold; Tielens, Alexander G. G. M.

2014-12-01

Interstellar molecules are thought to build up in the shielded environment of molecular clouds or in the envelope of evolved stars. This follows many sequential reaction steps of atoms and simple molecules in the gas phase and/or on (icy) grain surfaces. However, these chemical routes are highly inefficient for larger species in the tenuous environment of space as many steps are involved and, indeed, models fail to explain the observed high abundances. This is definitely the case for the C60 fullerene, recently identified as one of the most complex molecules in the interstellar medium. Observations have shown that, in some photodissociation regions, its abundance increases close to strong UV-sources. In this Letter we report laboratory findings in which C60 formation can be explained by characterizing the photochemical evolution of large polycyclic aromatic hydrocarbons (PAHs). Sequential H losses lead to fully dehydrogenated PAHs and subsequent losses of C2 units convert graphene into cages. Our results present for the first time experimental evidence that PAHs in excess of 60 C-atoms efficiently photo-isomerize to buckminsterfullerene, C60. These laboratory studies also attest to the importance of top-down synthesis routes for chemical complexity in space.

Capacitors in Series: A Laboratory Activity to Promote Critical Thinking.

ERIC Educational Resources Information Center

Noll, Ellis D.; Kowalski, Ludwik

1996-01-01

Describes experiments designed to explore the distribution of potential difference between two uncharged capacitors when they are suddenly connected to a source of constant voltage. Enables students to explore the evolution of a system in which initial voltage distribution depends on capacitor values, and the final voltage distribution depends on…

LLL Octopus network: some lessons and future directions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watson, R.W.

1978-06-27

The Octopus network, designed and developed by the Lawrence Livermore Laboratory, is a pioneering, high-performance, local computer network. Several lessons derived from the 14 years of experience in the evolution of Octopus are described, and some of the directions to be taken in its medium-term future are indicated. 3 figures.

Evolution of the Department of Defense Millimeter and Microwave Monolithic Integrated Circuit Program

DTIC Science & Technology

2007-02-01

Dingle, Arthur C. Cassard, and Horst L. Stormer of Bell Telephone Laboratory. [50] In 1979, DiLorenzo and Wisseman reported that over 350 papers on...Arthur C.; and Stormer , Horst L., “High Mobility Multilayer Hetrojunction Devices Employing Modulated Doping,’’ U. S. Patent 4163237, issued 3 1 July

Hands-On Laboratory Simulation of Evolution: An Investigation of Mutation, Natural Selection, & Speciation

ERIC Educational Resources Information Center

Hildebrand, Terri J.; Govedich, Fredric R.; Bain, Bonnie A.

2010-01-01

Evolutionary theory is the foundation of the biological sciences, yet conveying it to General Biology students often presents a challenge, especially at larger institutions where student numbers in foundation courses can exceed several hundred per lecture section. We present a pedagogically sound exercise that utilizes a series of simple and…

How To Make an Impact with Planetary Science. Part II.

ERIC Educational Resources Information Center

Scott, Robert

2002-01-01

Explains how the moon provides information about the evolution of the solar system and offers scope for physics-based investigations. Uses statistical analysis of real scientific data with which students can predict the diameter and depth of impact craters then compare them with data gathered in institutions or laboratories. (Author/YDS)

Explicit Reflective Nature of Science Instruction: Evolution, Intelligent Design, and Umbrellaology

ERIC Educational Resources Information Center

Scharmann, Lawrence C.; Smith, Mike U.; James, Mark C.; Jensen, Murray

2005-01-01

The investigators sought to design an instructional unit to enhance an understanding of the nature of science (NOS) by taking into account both instructional best practices and suggestions made by noted science philosopher Thomas Kuhn. Preservice secondary science teachers enrolled in a course, "Laboratory Techniques in the Teaching of Science,"…

Solar photo-Fenton treatment of carbofuran: analysis of mineralization, toxicity, and organic by-products.

PubMed

Lopez-Alvarez, Blady; Torres-Palma, Ricardo A; Ferraro, Franklin; Peñuela, Gustavo

2012-01-01

The degradation of the pesticide carbofuran (CBF) using solar photo-Fenton treatment, at both the laboratory and the pilot scale, was evaluated. At the laboratory scale, in a suntest reactor, the Fe(2+) concentration and H(2)O(2) concentration were evaluated and optimized using the surface response methodology and the Pareto diagram. Under optimal conditions experiments were performed to evaluate the evolution of the substrate removal, oxidation, subsequent mineralization, toxicity and the formation of chloride ions during the treatment. The analysis and evolution of five CBF by-products as well as several control and reactivity tests at the density functional theory level were used to depict a general scheme of the main degradation pathway of CBF via the photo-Fenton system. Finally, at the pilot scale, a sample of the commercial CBF product Furadan was eliminated after 420 min by the photo-Fenton system using direct sunlight. Under these conditions, after 900 min 89% of toxicity (1/E(50) on Vibrio fischeri bacteria), 97% of chemical oxygen demand, and 90% of dissolved organic carbon were removed.

Themes from a NASA workshop on gene regulatory processes in development and evolution

NASA Technical Reports Server (NTRS)

Davidson, E. H.; Ruvkun, G.; Davidowicz, L. (Principal Investigator)

1999-01-01

A memorable workshop, focused on causal mechanisms in metazoan evolution and sponsored by NASA, was held in early June 1998, at MBL. The workshop was organized by Mike Levine and Eric H. Davidson, and it included the PI and associates from 12 different laboratories, a total of about 30 people. Each laboratory had about two and one half hours in which to represent its recent research and cast up its current ideas for an often intense discussion. In the following we have tried to enunciate some of the major themes that emerged, and to reflect on their implications. The opinions voiced are our own. We would like to tender apologies over those contributions we have not been able to include, but this is not, strictly speaking, a meeting review. Rather we have focused on those topics that bear more directly on evolutionary mechanisms, and have therefore slighted some presentations (including some of our own), that were oriented mainly toward developmental processes. J. Exp. Zool. (Mol. Dev. Evol. ) 285:104-115, 1999. Copyright 1999 Wiley-Liss, Inc.

The evolution of cooperative breeding in the African cichlid fish, Neolamprologus pulcher.

PubMed

Wong, Marian; Balshine, Sigal

2011-05-01

The conundrum of why subordinate individuals assist dominants at the expense of their own direct reproduction has received much theoretical and empirical attention over the last 50 years. During this time, birds and mammals have taken centre stage as model vertebrate systems for exploring why helpers help. However, fish have great potential for enhancing our understanding of the generality and adaptiveness of helping behaviour because of the ease with which they can be experimentally manipulated under controlled laboratory and field conditions. In particular, the freshwater African cichlid, Neolamprologus pulcher, has emerged as a promising model species for investigating the evolution of cooperative breeding, with 64 papers published on this species over the past 27 years. Here we clarify current knowledge pertaining to the costs and benefits of helping in N. pulcher by critically assessing the existing empirical evidence. We then provide a comprehensive examination of the evidence pertaining to four key hypotheses for why helpers might help: (1) kin selection; (2) pay-to-stay; (3) signals of prestige; and (4) group augmentation. For each hypothesis, we outline the underlying theory, address the appropriateness of N. pulcher as a model species and describe the key predictions and associated empirical tests. For N. pulcher, we demonstrate that the kin selection and group augmentation hypotheses have received partial support. One of the key predictions of the pay-to-stay hypothesis has failed to receive any support despite numerous laboratory and field studies; thus as it stands, the evidence for this hypothesis is weak. There have been no empirical investigations addressing the key predictions of the signals of prestige hypothesis. By outlining the key predictions of the various hypotheses, and highlighting how many of these remain to be tested explicitly, our review can be regarded as a roadmap in which potential paths for future empirical research into the evolution of cooperative breeding are proposed. Overall, we clarify what is currently known about cooperative breeding in N. pulcher, address discrepancies among studies, caution against incorrect inferences that have been drawn over the years and suggest promising avenues for future research in fishes and other taxonomic groups. © 2010 The Authors. Biological Reviews © 2010 Cambridge Philosophical Society.

EPOS-WP16: A coherent and collaborative network of Solid Earth Multi-scale laboratories

NASA Astrophysics Data System (ADS)

Calignano, Elisa; Rosenau, Matthias; Lange, Otto; Spiers, Chris; Willingshofer, Ernst; Drury, Martyn; van Kan-Parker, Mirjam; Elger, Kirsten; Ulbricht, Damian; Funiciello, Francesca; Trippanera, Daniele; Sagnotti, Leonardo; Scarlato, Piergiorgio; Tesei, Telemaco; Winkler, Aldo

2017-04-01

Laboratory facilities are an integral part of Earth Science research. The diversity of methods employed in such infrastructures reflects the multi-scale nature of the Earth system and is essential for the understanding of its evolution, for the assessment of geo-hazards and for the sustainable exploitation of geo-resources. In the frame of EPOS (European Plate Observing System), the Working Package 16 represents a developing community of European Geoscience Multi-scale laboratories. The participant and collaborating institutions (Utrecht University, GFZ, RomaTre University, INGV, NERC, CSIC-ICTJA, CNRS, LMU, C4G-UBI, ETH, CNR*) embody several types of laboratory infrastructures, engaged in different fields of interest of Earth Science: from high temperature and pressure experimental facilities, to electron microscopy, micro-beam analysis, analogue tectonic and geodynamic modelling and paleomagnetic laboratories. The length scales encompassed by these infrastructures range from the nano- and micrometre levels (electron microscopy and micro-beam analysis) to the scale of experiments on centimetres-sized samples, and to analogue model experiments simulating the reservoir scale, the basin scale and the plate scale. The aim of WP16 is to provide two services by the year 2019: first, providing virtual access to data from laboratories (data service) and, second, providing physical access to laboratories (transnational access, TNA). Regarding the development of a data service, the current status is such that most data produced by the various laboratory centres and networks are available only in limited "final form" in publications, many data remain inaccessible and/or poorly preserved. Within EPOS the TCS Multi-scale laboratories is collecting and harmonizing available and emerging laboratory data on the properties and process controlling rock system behaviour at all relevant scales, in order to generate products accessible and interoperable through services for supporting research activities into Geo-resources and Geo-storage, Geo-hazards and Earth System Evolution. Regarding the provision of physical access to laboratories the current situation is such that access to WP16's laboratories is often based on professional relations, available budgets, shared interests and other constraints. In WP16 we aim at reducing the present diversity and non-transparency of access rules and replace ad-hoc procedures for access by a streamlined mechanisms, objective rules and a transparent policy. We work on procedures and mechanisms regulating application, negotiation, evaluation, feedback, selection, admission, approval, feasibility check, setting-up, use, monitoring and dismantling. In the end laboratories should each have a single point providing clear and transparent information on the facility itself, its services, access policy, data management policy and the legal terms and conditions for use of equipment. Through its role as an intermediary and information broker, EPOS will acquire a wealth of information from Research Infrastructures and users on the establishment of efficient collaboration agreements.

Plastic flies: the regulation and evolution of trait variability in Drosophila.

PubMed

Shingleton, Alexander W; Tang, Hui Yuan

2012-01-01

Individuals within species and populations vary. Such variation arises through environmental and genetic factors and ensures that no two individuals are identical. However, it is clear that not all traits show the same degree of intraspecific variation. Some traits, in particular secondary sexual characteristics used by males to compete for and attract females, are extremely variable among individuals in a population. Other traits, for example brain size in mammals, are not. Recent research has begun to explore the possibility that the extent of phenotypic variation (here referred to as "variability") may be a character itself and subject to natural selection. While these studies support the concept of variability as an evolvable trait, controversy remains over what precisely the trait is. At the heart of this controversy is the fact that there are very few examples of developmental mechanisms that regulate trait variability in response to any source of variation, be it environmental or genetic. Here, we describe a recent study from our laboratory that identifies such a mechanism. We then place the study in the context of current research on the regulation of trait variability, and discuss the implications for our understanding of the developmental regulation and evolution of phenotypic variation.

Experimental Studies on Wave Interactions of Partially Perforated Wall under Obliquely Incident Waves

PubMed Central

Lee, Jong-In; Kim, Young-Taek; Shin, Sungwon

2014-01-01

This study presents wave height distribution in terms of stem wave evolution phenomena on partially perforated wall structures through three-dimensional laboratory experiments. The plain and partially perforated walls were tested to understand their effects on the stem wave evolution under the monochromatic and random wave cases with the various wave conditions, incident angle (from 10 to 40 degrees), and configurations of front and side walls. The partially perforated wall reduced the relative wave heights more effectively compared to the plain wall structure. Partially perforated walls with side walls showed a better performance in terms of wave height reduction compared to the structure without the side wall. Moreover, the relative wave heights along the wall were relatively small when the relative chamber width is large, within the range of the chamber width in this study. The wave spectra showed a frequency dependency of the wave energy dissipation. In most cases, the existence of side wall is a more important factor than the porosity of the front wall in terms of the wave height reduction even if the partially perforated wall was still effective compared to the plain wall. PMID:25254260

Experimental studies on wave interactions of partially perforated wall under obliquely incident waves.

PubMed

Lee, Jong-In; Kim, Young-Taek; Shin, Sungwon

2014-01-01

This study presents wave height distribution in terms of stem wave evolution phenomena on partially perforated wall structures through three-dimensional laboratory experiments. The plain and partially perforated walls were tested to understand their effects on the stem wave evolution under the monochromatic and random wave cases with the various wave conditions, incident angle (from 10 to 40 degrees), and configurations of front and side walls. The partially perforated wall reduced the relative wave heights more effectively compared to the plain wall structure. Partially perforated walls with side walls showed a better performance in terms of wave height reduction compared to the structure without the side wall. Moreover, the relative wave heights along the wall were relatively small when the relative chamber width is large, within the range of the chamber width in this study. The wave spectra showed a frequency dependency of the wave energy dissipation. In most cases, the existence of side wall is a more important factor than the porosity of the front wall in terms of the wave height reduction even if the partially perforated wall was still effective compared to the plain wall.

Astrophysics with Presolar Stardust

NASA Astrophysics Data System (ADS)

Clayton, Donald D.; Nittler, Larry R.

2004-09-01

Meteorites and interplanetary dust particles contain presolar stardust grains: solid samples of stars that can be studied in the laboratory. The stellar origin of the grains is indicated by enormous isotopic ratio variations compared with Solar System materials, explainable only by nuclear reactions occurring in stars. Known presolar phases include diamond, SiC, graphite, Si3N4, Al2O3, MgAl2O4, CaAl12O19, TiO2, Mg(Cr,Al)2O4, and most recently, silicates. Subgrains of refractory carbides (e.g., TiC), and Fe-Ni metal have also been observed within individual presolar graphite grains. We review the astrophysical implications of these grains for the sciences of nucleosynthesis, stellar evolution, grain condensation, and the chemical and dynamic evolution of the Galaxy. Unique scientific information derives primarily from the high precision (in some cases <1%) of the measured isotopic ratios of large numbers of elements in single stardust grains. Stardust science is just now reaching maturity and will play an increasingly important role in nucleosynthesis applications.

Hydrodynamic instabilities at an oblique interface: Experiments and Simulations

NASA Astrophysics Data System (ADS)

Douglas-Mann, E.; Fiedler Kawaguchi, C.; Trantham, M. A.; Malamud, G.; Wan, W. C.; Klein, S. R.; Kuranz, C. C.

2017-10-01

Hydrodynamic instabilities are important phenomena that occur in high-energy-density systems, such as astrophysical systems and inertial confinement fusion experiments, where pressure, density, and velocity gradients are present. Using a 30 ns laser pulse from the Omega EP laser system, a steady shock wave is driven into a target. A Spherical Crystal Imager provides high-resolution x-ray radiographs to study the evolution of complex hydrodynamic structures. This experiment has a light-to-heavy interface at an oblique angle with a precision-machined perturbation. The incident shock wave deposits shear and vorticity at the interface causing the perturbation to grow via Richtmyer-Meshkov and Kelvin-Helmholtz processes. We present results from analysis of radiographic data and hydrodynamics simulations showing the evolution of the shock and unstable structure. This work is supported by the NNSA-DS and SC-OFES Joint Program in High-Energy-Density Laboratory Plasmas, Grant Number DE-NA0002956 and the National Science Foundation through the Basic Plasma Science and Engineering program and LILAC.

The diffuse interstellar bands: a tracer for organics in the diffuse interstellar medium?

NASA Technical Reports Server (NTRS)

Salama, F.

1998-01-01

The diffuse interstellar bands (DIBs) are absorption bands seen in the spectra of stars obscured by interstellar dust. DIBs are recognized as a tracer for free, organic molecules in the diffuse interstellar medium (ISM). The potential molecular carriers for the DIBs are discussed with an emphasis on neutral and ionized polycyclic aromatic hydrocarbons (PAHs) for which the most focused effort has been made to date. From the combined astronomical, laboratory and theoretical study, it is concluded that a distribution of free neutral and ionized complex organics (PAHs, fullerenes, unsaturated hydrocarbons) represents the most promising class of candidates to account for the DIBs. The case for aromatic hydrocarbons appears particularly strong. The implied widespread distribution of complex organics in the diffuse ISM bears profound implications for our understanding of the chemical complexity of the ISM, the evolution of prebiotic molecules and its impact on the origin and the evolution of life on early Earth through the exogenous delivery (cometary encounters and metoritic bombardments) of prebiotic organics.

Microstructural Evolution and the Precipitation Behavior in X90 Linepipe Steel During Isothermal Processing

NASA Astrophysics Data System (ADS)

Tian, Y.; Wang, H. T.; Wang, Z. D.; Misra, R. D. K.; Wang, G. D.

2018-03-01

Thermomechanical controlled processing of 560-MPa (X90) linepipe steel was simulated in the laboratory using a thermomechanical simulator to study the microstructural evolution and precipitation behavior during isothermal holding. The results indicated that martensite was obtained when the steels were isothermally held for 5 s at 700 °C. Subsequently, granular bainite and acicular ferrite transformation occurred with increased holding time. Different amount of polygonal ferrite formed after isothermally holding for 600-3600 s. Pearlite nucleated after isothermally holding for 3600 s. Precipitation occurred after isothermal holding for 5 s and continuous precipitation occurred at grain boundaries after isothermally holding for 600 s. After isothermally holding for 3600 s, large Nb/Ti carbide precipitated. The presence of MX-type precipitates was confirmed by diffraction pattern. The interphase precipitation (IP) occurred between 5 and 30 s. Maximum hardness was obtained after isothermally holding for 600 s when IP occurred and rapidly decreased to a low value, mainly because polygonal ferrite dominated the microstructure after isothermally holding for 3600 s.

Chemical evolution of atmospheric organic carbon over multiple generations of oxidation

NASA Astrophysics Data System (ADS)

Isaacman-VanWertz, Gabriel; Massoli, Paola; O'Brien, Rachel; Lim, Christopher; Franklin, Jonathan P.; Moss, Joshua A.; Hunter, James F.; Nowak, John B.; Canagaratna, Manjula R.; Misztal, Pawel K.; Arata, Caleb; Roscioli, Joseph R.; Herndon, Scott T.; Onasch, Timothy B.; Lambe, Andrew T.; Jayne, John T.; Su, Luping; Knopf, Daniel A.; Goldstein, Allen H.; Worsnop, Douglas R.; Kroll, Jesse H.

2018-02-01

The evolution of atmospheric organic carbon as it undergoes oxidation has a controlling influence on concentrations of key atmospheric species, including particulate matter, ozone and oxidants. However, full characterization of organic carbon over hours to days of atmospheric processing has been stymied by its extreme chemical complexity. Here we study the multigenerational oxidation of α-pinene in the laboratory, characterizing products with several state-of-the-art analytical techniques. Although quantification of some early generation products remains elusive, full carbon closure is achieved (within measurement uncertainty) by the end of the experiments. These results provide new insights into the effects of oxidation on organic carbon properties (volatility, oxidation state and reactivity) and the atmospheric lifecycle of organic carbon. Following an initial period characterized by functionalization reactions and particle growth, fragmentation reactions dominate, forming smaller species. After approximately one day of atmospheric aging, most carbon is sequestered in two long-lived reservoirs—volatile oxidized gases and low-volatility particulate matter.

Good Samaritans in Networks: An Experiment on How Networks Influence Egalitarian Sharing and the Evolution of Inequality

PubMed Central

Chiang, Yen-Sheng

2015-01-01

The fact that the more resourceful people are sharing with the poor to mitigate inequality—egalitarian sharing—is well documented in the behavioral science research. How inequality evolves as a result of egalitarian sharing is determined by the structure of “who gives whom”. While most prior experimental research investigates allocation of resources in dyads and groups, the paper extends the research of egalitarian sharing to networks for a more generalized structure of social interaction. An agent-based model is proposed to predict how actors, linked in networks, share their incomes with neighbors. A laboratory experiment with human subjects further shows that income distributions evolve to different states in different network topologies. Inequality is significantly reduced in networks where the very rich and the very poor are connected so that income discrepancy is salient enough to motivate the rich to share their incomes with the poor. The study suggests that social networks make a difference in how egalitarian sharing influences the evolution of inequality. PMID:26061642

Dentistry proteomics: from laboratory development to clinical practice.

PubMed

Rezende, Taia M B; Lima, Stella M F; Petriz, Bernardo A; Silva, Osmar N; Freire, Mirna S; Franco, Octávio L

2013-12-01

Despite all the dental information acquired over centuries and the importance of proteome research, the cross-link between these two areas only emerged around mid-nineties. Proteomic tools can help dentistry in the identification of risk factors, early diagnosis, prevention, and systematic control that will promote the evolution of treatment in all dentistry specialties. This review mainly focuses on the evolution of dentistry in different specialties based on proteomic research and how these tools can improve knowledge in dentistry. The subjects covered are an overview of proteomics in dentistry, specific information on different fields in dentistry (dental structure, restorative dentistry, endodontics, periodontics, oral pathology, oral surgery, and orthodontics) and future directions. There are many new proteomic technologies that have never been used in dentistry studies and some dentistry areas that have never been explored by proteomic tools. It is expected that a greater integration of these areas will help to understand what is still unknown in oral health and disease. Copyright © 2013 Wiley Periodicals, Inc.

Chemical evolution of atmospheric organic carbon over multiple generations of oxidation.

PubMed

Isaacman-VanWertz, Gabriel; Massoli, Paola; O'Brien, Rachel; Lim, Christopher; Franklin, Jonathan P; Moss, Joshua A; Hunter, James F; Nowak, John B; Canagaratna, Manjula R; Misztal, Pawel K; Arata, Caleb; Roscioli, Joseph R; Herndon, Scott T; Onasch, Timothy B; Lambe, Andrew T; Jayne, John T; Su, Luping; Knopf, Daniel A; Goldstein, Allen H; Worsnop, Douglas R; Kroll, Jesse H

2018-04-01

The evolution of atmospheric organic carbon as it undergoes oxidation has a controlling influence on concentrations of key atmospheric species, including particulate matter, ozone and oxidants. However, full characterization of organic carbon over hours to days of atmospheric processing has been stymied by its extreme chemical complexity. Here we study the multigenerational oxidation of α-pinene in the laboratory, characterizing products with several state-of-the-art analytical techniques. Although quantification of some early generation products remains elusive, full carbon closure is achieved (within measurement uncertainty) by the end of the experiments. These results provide new insights into the effects of oxidation on organic carbon properties (volatility, oxidation state and reactivity) and the atmospheric lifecycle of organic carbon. Following an initial period characterized by functionalization reactions and particle growth, fragmentation reactions dominate, forming smaller species. After approximately one day of atmospheric aging, most carbon is sequestered in two long-lived reservoirs-volatile oxidized gases and low-volatility particulate matter.

Wetting and free surface flow modeling for potting and encapsulation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brooks, Carlton, F.; Brooks, Michael J.; Graham, Alan Lyman

As part of an effort to reduce costs and improve quality control in encapsulation and potting processes the Technology Initiative Project ''Defect Free Manufacturing and Assembly'' has completed a computational modeling study of flows representative of those seen in these processes. Flow solutions are obtained using a coupled, finite-element-based, numerical method based on the GOMA/ARIA suite of Sandia flow solvers. The evolution of the free surface is solved with an advanced level set algorithm. This approach incorporates novel methods for representing surface tension and wetting forces that affect the evolution of the free surface. In addition, two commercially available codes,more » ProCAST and MOLDFLOW, are also used on geometries representing encapsulation processes at the Kansas City Plant. Visual observations of the flow in several geometries are recorded in the laboratory and compared to the models. Wetting properties for the materials in these experiments are measured using a unique flowthrough goniometer.« less

Physico-Chemical Evolution of Organic Aerosol from Wildfire Emissions

NASA Astrophysics Data System (ADS)

Croteau, P.; Jathar, S.; Akherati, A.; Galang, A.; Tarun, S.; Onasch, T. B.; Lewane, L.; Herndon, S. C.; Roscioli, J. R.; Yacovitch, T. I.; Fortner, E.; Xu, W.; Daube, C.; Knighton, W. B.; Werden, B.; Wood, E.

2017-12-01

Wildfires are the largest combustion-related source of carbonaceous emissions to the atmosphere; these include direct emissions of black carbon (BC), primary organic aerosol (POA) and semi-volatile, intermediate-volatility, and volatile organic compounds (SVOCs, IVOCs, and VOCs). However, there are large uncertainties surrounding the evolution of these carbonaceous emissions as they are physically and chemically transformed in the atmosphere. To understand these transformations, we performed sixteen experiments using an environmental chamber to simulate day- and night-time chemistry of gas- and aerosol-phase emissions from 6 different fuels at the Fire Laboratory in Missoula, MT. Across the test matrix, the experiments simulated 2 to 8 hours of equivalent day-time aging (with the hydroxyl radical and ozone) or several hours of night-time aging (with the nitrate radical). Aging resulted in an average organic aerosol (OA) mass enhancement of 28% although the full range of OA mass enhancements varied between -10% and 254%. These enhancement findings were consistent with chamber and flow reactor experiments performed at the Fire Laboratory in 2010 and 2012 but, similar to previous studies, offered no evidence to link the OA mass enhancement to fuel type or oxidant exposure. Experiments simulating night-time aging resulted in an average OA mass enhancement of 10% and subsequent day-time aging resulted in a decrease in OA mass of 8%. While small, for the first time, these experiments highlighted the continuous nature of the OA evolution as the wildfire smoke cycled through night- and day-time processes. Ongoing work is focussed on (i) quantifying bulk compositional changes in OA, (ii) comparing the near-field aging simulated in this work with far-field aging simulated during the same campaign (via a mini chamber and flow tube) and (iii) integrating wildfire smoke aging datasets over the past decade to examine the relationship between OA mass enhancement ratios, modified combustion efficiency, initial aerosol concentrations and composition, aerosol size, oxidant exposure, VOC:NOx ratios, and emissions and speciation of SOA precursors.

Cultural Transmission and Evolution of Melodic Structures in Multi-generational Signaling Games.

PubMed

Lumaca, Massimo; Baggio, Giosuè

2017-01-01

It has been proposed that languages evolve by adapting to the perceptual and cognitive constraints of the human brain, developing, in the course of cultural transmission, structural regularities that maximize or optimize learnability and ease of processing. To what extent would perceptual and cognitive constraints similarly affect the evolution of musical systems? We conducted an experiment on the cultural evolution of artificial melodic systems, using multi-generational signaling games as a laboratory model of cultural transmission. Signaling systems, using five-tone sequences as signals, and basic and compound emotions as meanings, were transmitted from senders to receivers along diffusion chains in which the receiver in each game became the sender in the next game. During transmission, structural regularities accumulated in the signaling systems, following principles of proximity, symmetry, and good continuation. Although the compositionality of signaling systems did not increase significantly across generations, we did observe a significant increase in similarity among signals from the same set. We suggest that our experiment tapped into the cognitive and perceptual constraints operative in the cultural evolution of musical systems, which may differ from the mechanisms at play in language evolution and change.

Mobile Genetic Elements: In Silico, In Vitro, In Vivo

PubMed Central

Arkhipova, Irina R.; Rice, Phoebe A.

2016-01-01

Mobile genetic elements (MGEs), also called transposable elements (TEs), represent universal components of most genomes and are intimately involved in nearly all aspects of genome organization, function, and evolution. However, there is currently a gap between fast-paced TE discovery in silico, stimulated by exponential growth of comparative genomic studies, and a limited number of experimental models amenable to more traditional in vitro and in vivo studies of structural, mechanistic, and regulatory properties of diverse MGEs. Experimental and computational scientists came together to bridge this gap at a recent conference, “Mobile Genetic Elements: in silico, in vitro, in vivo,” held at the Marine Biological Laboratory (MBL) in Woods Hole, MA, USA. PMID:26822117

Physical and chemical evolution of reduced organic matter in the ISM

NASA Technical Reports Server (NTRS)

Jenniskens, Peter; Blake, David F.

1995-01-01

Icy mantles on interstellar grains have been a topic of study in airborne astronomy. Recent laboratory analog studies of the yield of organic residue from UV photolyzed ices have shown that this mechanism can be the most significant source of complex reduced organic matter in the interstellar medium. However, the total yield is a function of the occurrence of heating events that evaporate the ice, i.e. T is greater than 130 K, and the mechanism for such events is debated. Recently, we proposed that the recombination of radicals in the ice does not need high temperature excursions and, instead, occurs during a structural transformation of water ice at temperatures in the range 38 - 68 K.

A numerical study of the thermal stability of low-lying coronal loops

NASA Technical Reports Server (NTRS)

Klimchuk, J. A.; Antiochos, S. K.; Mariska, J. T.

1986-01-01

The nonlinear evolution of loops that are subjected to a variety of small but finite perturbations was studied. Only the low-lying loops are considered. The analysis was performed numerically using a one-dimensional hydrodynamical model developed at the Naval Research Laboratory. The computer codes solve the time-dependent equations for mass, momentum, and energy transport. The primary interest is the active region filaments, hence a geometry appropriate to those structures was considered. The static solutions were subjected to a moderate sized perturbation and allowed to evolve. The results suggest that both hot and cool loops of the geometry considered are thermally stable against amplitude perturbations of all kinds.

Evolution of Combustion-Generated Particles at Tropospheric Conditions

NASA Technical Reports Server (NTRS)

Tacina, Kathleen M.; Heath, Christopher M.

2012-01-01

This paper describes particle evolution measurements taken in the Particulate Aerosol Laboratory (PAL). The PAL consists of a burner capable of burning jet fuel that exhausts into an altitude chamber that can simulate temperature and pressure conditions up to 13,700 m. After presenting results from initial temperature distributions inside the chamber, particle count data measured in the altitude chamber are shown. Initial particle count data show that the sampling system can have a significant effect on the measured particle distribution: both the value of particle number concentration and the shape of the radial distribution of the particle number concentration depend on whether the measurement probe is heated or unheated.

Evolution of the Pinatubo volcanic aerosol column above Pasadena, California observed with a mid-infrared backscatter lidar

NASA Technical Reports Server (NTRS)

Tratt, David M.; Menzies, Robert T.

1995-01-01

The evolution of the volcanic debris plume originating from the June 1991 eruption of Mt. Pinatubo has been monitored since its genesis using a ground-based backscatter lidar facility sited at the Jet Propulsion Laboratory (JPL). Both absolute and relative pre- and post-Pinatubo backscatter observations are in accord with Mie scattering projections based on measured aerosol particle size distributions reported in the literature. The post-Pinatubo column-integrated backscatter coefficient peaked approximately 400 days after the eruption, and the observed upper boundary of the aerosol column subsided at a rate of approximately 200 m/mon.

Applied evolutionary theories for engineering of secondary metabolic pathways.

PubMed

Bachmann, Brian O

2016-12-01

An expanded definition of 'secondary metabolism' is emerging. Once the exclusive provenance of naturally occurring organisms, evolved over geological time scales, secondary metabolism increasingly encompasses molecules generated via human engineered biocatalysts and biosynthetic pathways. Many of the tools and strategies for enzyme and pathway engineering can find origins in evolutionary theories. This perspective presents an overview of selected proposed evolutionary strategies in the context of engineering secondary metabolism. In addition to the wealth of biocatalysts provided via secondary metabolic pathways, improving the understanding of biosynthetic pathway evolution will provide rich resources for methods to adapt to applied laboratory evolution. Copyright © 2016 Elsevier Ltd. All rights reserved.